title: PB-OTBCs86-L1-OCT4siRNA

description: C_RMF:OTBCs-86-L1; OCT4 transduced breast colonies derived from p86 and transfected with an OCT4 siRNA

value: OTBCs81-L1 OCT4 transduced breast cells transfected with an OCT4 siRNA


title: Breast tumor tissue Sample967

status: Public on Aug 17 2011

type: genomic

city: Houston

first: Spiridon

last: Tsavachidis

state: TX

address: 1515 Holcombe Blvd.

department: Epidemiology

country: USA

institute: MD Anderson Cancer Center

hyb_protocol: standard affymetrix protocol

scan_protocol: standard affymetrix protocol

data_processing:
standard affymetrix protocol
Raw copy number (linear scale) is given in Sample*.txt files. The copy number data were binned in 13175 sets of consecutive Mips. CBS algorithm was applied on the 13175 bins to get segmented copy number values for each sample. Segment boundaries for each sample were combined and 1593 common segments were defined. The data matrix contains start/stop positions for each segment, and the data takes -1,0,1 values corresponding to copy number loss (copy number <1.5), neutral, copy number gain (copy number>2.5), respectively.

label: biotin

molecule: genomic DNA

organism: Homo sapiens

source_name: breast tumor sample 967

label_protocol: standard affymetrix protocol

extract_protocol: 5-10 (5-μm) macrodissected tumor sections containing > 80% tumor cells per protocol were pooled and treated three times with proteinase K in ATL Tissue Lysis Buffer™ (Qiagen, Valencia, CA).

treatment_protocol: retrospective collection of cases receiving standard of care

tag: Stage

value: II

tag: age at diagnosis

tag: er status

value: negative

tag: pr status

tag: tissue

value: breast cancer tumor


title: Breast tumor tissue Sample970

source_name: breast tumor sample 970


title: Breast tumor tissue Sample957

source_name: breast tumor sample 957

value: positive


title: Breast tumor tissue Sample959

source_name: breast tumor sample 959


title: Breast tumor tissue Sample968

source_name: breast tumor sample 968

value: I


title: Breast tumor tissue Sample947

source_name: breast tumor sample 947


title: Breast tumor tissue Sample971

source_name: breast tumor sample 971


title: Breast tumor tissue Sample961

source_name: breast tumor sample 961


title: Breast tumor tissue Sample951

source_name: breast tumor sample 951


title: Breast tumor tissue Sample949

source_name: breast tumor sample 949


title: Breast tumor tissue Sample952

source_name: breast tumor sample 952


title: Breast tumor tissue Sample960

source_name: breast tumor sample 960


title: Breast tumor tissue Sample966

source_name: breast tumor sample 966


title: Breast tumor tissue Sample943

source_name: breast tumor sample 943


title: Breast tumor tissue Sample965

source_name: breast tumor sample 965


title: Breast tumor tissue Sample950

source_name: breast tumor sample 950


title: Breast tumor tissue Sample955

source_name: breast tumor sample 955


title: Breast tumor tissue Sample945

source_name: breast tumor sample 945


title: Breast tumor tissue Sample963

source_name: breast tumor sample 963


title: Breast tumor tissue Sample942

source_name: breast tumor sample 942


title: Breast tumor tissue Sample969

source_name: breast tumor sample 969


title: Breast tumor tissue Sample962

source_name: breast tumor sample 962


title: Breast tumor tissue Sample958

source_name: breast tumor sample 958


title: Breast tumor tissue Sample948

source_name: breast tumor sample 948


title: Breast tumor tissue Sample956

source_name: breast tumor sample 956


title: Breast tumor tissue Sample944

source_name: breast tumor sample 944


title: Breast tumor tissue Sample953

source_name: breast tumor sample 953


title: Breast tumor tissue Sample954

source_name: breast tumor sample 954


title: Breast tumor tissue Sample964

source_name: breast tumor sample 964


title: Breast tumor tissue Sample946

source_name: breast tumor sample 946


title: Breast tumor tissue Sample940

source_name: breast tumor sample 940


title: Breast tumor tissue Sample941

source_name: breast tumor sample 941


title: Breast tumor tissue Sample938

source_name: breast tumor sample 938


title: Breast tumor tissue Sample939

source_name: breast tumor sample 939


title: Breast tumor tissue Sample936

source_name: breast tumor sample 936


title: Breast tumor tissue Sample933

source_name: breast tumor sample 933


title: Breast tumor tissue Sample932

source_name: breast tumor sample 932


title: Breast tumor tissue Sample931

source_name: breast tumor sample 931


title: Breast tumor tissue Sample935

source_name: breast tumor sample 935


title: Breast tumor tissue Sample927

source_name: breast tumor sample 927


title: Breast tumor tissue Sample934

source_name: breast tumor sample 934


title: Breast tumor tissue Sample929

source_name: breast tumor sample 929


title: Breast tumor tissue Sample928

source_name: breast tumor sample 928


title: Breast tumor tissue Sample923

source_name: breast tumor sample 923


title: Breast tumor tissue Sample922

source_name: breast tumor sample 922


title: Breast tumor tissue Sample926

source_name: breast tumor sample 926


title: Breast tumor tissue Sample930

source_name: breast tumor sample 930


title: Breast tumor tissue Sample917

source_name: breast tumor sample 917


title: Breast tumor tissue Sample913

source_name: breast tumor sample 913


title: Breast tumor tissue Sample924

source_name: breast tumor sample 924


title: Breast tumor tissue Sample910

source_name: breast tumor sample 910


title: Breast tumor tissue Sample919

source_name: breast tumor sample 919


title: Breast tumor tissue Sample920

source_name: breast tumor sample 920


title: Breast tumor tissue Sample914

source_name: breast tumor sample 914


title: Breast tumor tissue Sample921

source_name: breast tumor sample 921


title: Breast tumor tissue Sample915

source_name: breast tumor sample 915


title: Breast tumor tissue Sample925

source_name: breast tumor sample 925


title: Breast tumor tissue Sample918

source_name: breast tumor sample 918


title: Breast tumor tissue Sample916

source_name: breast tumor sample 916


title: Breast tumor tissue Sample908

source_name: breast tumor sample 908


title: Breast tumor tissue Sample909

source_name: breast tumor sample 909


title: Breast tumor tissue Sample907

source_name: breast tumor sample 907


title: Breast tumor tissue Sample912

source_name: breast tumor sample 912


title: Breast tumor tissue Sample911

source_name: breast tumor sample 911


title: Breast tumor tissue Sample905

source_name: breast tumor sample 905


title: Breast tumor tissue Sample937

source_name: breast tumor sample 937


title: Breast tumor tissue Sample904

source_name: breast tumor sample 904


title: Breast tumor tissue Sample895

source_name: breast tumor sample 895


title: Breast tumor tissue Sample902

source_name: breast tumor sample 902


title: Breast tumor tissue Sample906

source_name: breast tumor sample 906


title: Breast tumor tissue Sample903

source_name: breast tumor sample 903


title: Breast tumor tissue Sample896

source_name: breast tumor sample 896


title: Breast tumor tissue Sample900

source_name: breast tumor sample 900


title: Breast tumor tissue Sample899

source_name: breast tumor sample 899


title: Breast tumor tissue Sample898

source_name: breast tumor sample 898


title: Breast tumor tissue Sample901

source_name: breast tumor sample 901


title: Breast tumor tissue Sample897

source_name: breast tumor sample 897


title: Breast tumor tissue Sample894

source_name: breast tumor sample 894


title: Breast tumor tissue Sample891

source_name: breast tumor sample 891


title: Breast tumor tissue Sample893

source_name: breast tumor sample 893


title: Breast tumor tissue Sample892

source_name: breast tumor sample 892


title: Breast tumor tissue Sample883

source_name: breast tumor sample 883


title: Breast tumor tissue Sample884

source_name: breast tumor sample 884


title: Breast tumor tissue Sample889

source_name: breast tumor sample 889


title: Breast tumor tissue Sample879

source_name: breast tumor sample 879


title: Breast tumor tissue Sample887

source_name: breast tumor sample 887


title: Breast tumor tissue Sample886

source_name: breast tumor sample 886


title: Breast tumor tissue Sample885

source_name: breast tumor sample 885


title: Breast tumor tissue Sample878

source_name: breast tumor sample 878


title: Breast tumor tissue Sample890

source_name: breast tumor sample 890


title: Breast tumor tissue Sample881

source_name: breast tumor sample 881


title: Breast tumor tissue Sample882

source_name: breast tumor sample 882


title: Breast tumor tissue Sample876

source_name: breast tumor sample 876


title: Breast tumor tissue Sample877

source_name: breast tumor sample 877


title: Breast tumor tissue Sample888

source_name: breast tumor sample 888


title: Breast tumor tissue Sample880

source_name: breast tumor sample 880


title: Breast tumor tissue Sample864

source_name: breast tumor sample 864


title: Breast tumor tissue Sample863

source_name: breast tumor sample 863


title: Breast tumor tissue Sample872

source_name: breast tumor sample 872


title: Breast tumor tissue Sample873

source_name: breast tumor sample 873


title: Breast tumor tissue Sample870

source_name: breast tumor sample 870


title: Breast tumor tissue Sample860

source_name: breast tumor sample 860


title: Breast tumor tissue Sample867

source_name: breast tumor sample 867


title: Breast tumor tissue Sample874

source_name: breast tumor sample 874


title: Breast tumor tissue Sample856

source_name: breast tumor sample 856


title: Breast tumor tissue Sample862

source_name: breast tumor sample 862


title: Breast tumor tissue Sample871

source_name: breast tumor sample 871


title: Breast tumor tissue Sample865

source_name: breast tumor sample 865


title: Breast tumor tissue Sample875

source_name: breast tumor sample 875


title: Breast tumor tissue Sample861

source_name: breast tumor sample 861


title: Breast tumor tissue Sample858

source_name: breast tumor sample 858


title: Breast tumor tissue Sample866

source_name: breast tumor sample 866


title: Breast tumor tissue Sample849

source_name: breast tumor sample 849


title: Breast tumor tissue Sample852

source_name: breast tumor sample 852


title: Breast tumor tissue Sample853

source_name: breast tumor sample 853


title: Breast tumor tissue Sample869

source_name: breast tumor sample 869


title: Breast tumor tissue Sample855

source_name: breast tumor sample 855


title: Breast tumor tissue Sample854

source_name: breast tumor sample 854


title: Breast tumor tissue Sample868

source_name: breast tumor sample 868


title: Breast tumor tissue Sample851

source_name: breast tumor sample 851


title: Breast tumor tissue Sample845

source_name: breast tumor sample 845


title: Breast tumor tissue Sample848

source_name: breast tumor sample 848


title: Breast tumor tissue Sample859

source_name: breast tumor sample 859


title: Breast tumor tissue Sample857

source_name: breast tumor sample 857


title: Breast tumor tissue Sample844

source_name: breast tumor sample 844


title: Breast tumor tissue Sample847

source_name: breast tumor sample 847


title: Breast tumor tissue Sample850

source_name: breast tumor sample 850


title: Breast tumor tissue Sample840

source_name: breast tumor sample 840


title: Breast tumor tissue Sample841

source_name: breast tumor sample 841


title: Breast tumor tissue Sample837

source_name: breast tumor sample 837


title: Breast tumor tissue Sample838

source_name: breast tumor sample 838


title: Breast tumor tissue Sample839

source_name: breast tumor sample 839


title: Breast tumor tissue Sample842

source_name: breast tumor sample 842


title: Breast tumor tissue Sample835

source_name: breast tumor sample 835


title: Breast tumor tissue Sample836

source_name: breast tumor sample 836


title: Breast tumor tissue Sample834

source_name: breast tumor sample 834


title: Breast tumor tissue Sample831

source_name: breast tumor sample 831


title: Breast tumor tissue Sample832

source_name: breast tumor sample 832


title: Breast tumor tissue Sample829

source_name: breast tumor sample 829


title: Breast tumor tissue Sample821

source_name: breast tumor sample 821


title: Breast tumor tissue Sample820

source_name: breast tumor sample 820


title: Breast tumor tissue Sample833

source_name: breast tumor sample 833


title: Breast tumor tissue Sample830

source_name: breast tumor sample 830


title: Breast tumor tissue Sample826

source_name: breast tumor sample 826


title: Breast tumor tissue Sample828

source_name: breast tumor sample 828


title: Breast tumor tissue Sample825

source_name: breast tumor sample 825


title: Breast tumor tissue Sample822

source_name: breast tumor sample 822


title: Breast tumor tissue Sample817

source_name: breast tumor sample 817


title: Breast tumor tissue Sample814

source_name: breast tumor sample 814


title: Breast tumor tissue Sample818

source_name: breast tumor sample 818


title: Breast tumor tissue Sample823

source_name: breast tumor sample 823


title: Breast tumor tissue Sample815

source_name: breast tumor sample 815


title: Breast tumor tissue Sample819

source_name: breast tumor sample 819


title: Breast tumor tissue Sample827

source_name: breast tumor sample 827


title: Breast tumor tissue Sample816

source_name: breast tumor sample 816


title: Breast tumor tissue Sample812

source_name: breast tumor sample 812


title: Breast tumor tissue Sample811

source_name: breast tumor sample 811


title: Breast tumor tissue Sample810

source_name: breast tumor sample 810


title: Breast tumor tissue Sample813

source_name: breast tumor sample 813


title: Breast tumor tissue Sample809

source_name: breast tumor sample 809


title: Breast tumor tissue Sample846

source_name: breast tumor sample 846


title: Breast tumor tissue Sample805

source_name: breast tumor sample 805


title: Breast tumor tissue Sample806

source_name: breast tumor sample 806


title: Breast tumor tissue Sample804

source_name: breast tumor sample 804


title: Breast tumor tissue Sample807

source_name: breast tumor sample 807


title: Breast tumor tissue Sample843

source_name: breast tumor sample 843


title: Breast tumor tissue Sample808

source_name: breast tumor sample 808


title: Breast tumor tissue Sample824

source_name: breast tumor sample 824


title: Breast tumor tissue Sample796

source_name: breast tumor sample 796


title: Breast tumor tissue Sample801

source_name: breast tumor sample 801


title: Breast tumor tissue Sample795

source_name: breast tumor sample 795


title: Breast tumor tissue Sample794

source_name: breast tumor sample 794


title: Breast tumor tissue Sample800

source_name: breast tumor sample 800


title: Breast tumor tissue Sample802

source_name: breast tumor sample 802


title: Breast tumor tissue Sample797

source_name: breast tumor sample 797


title: Breast tumor tissue Sample793

source_name: breast tumor sample 793


title: Breast tumor tissue Sample791

source_name: breast tumor sample 791


title: Breast tumor tissue Sample803

source_name: breast tumor sample 803


title: Breast tumor tissue Sample790

source_name: breast tumor sample 790


title: Breast tumor tissue Sample787

source_name: breast tumor sample 787


title: Breast tumor tissue Sample799

source_name: breast tumor sample 799


title: Breast tumor tissue Sample792

source_name: breast tumor sample 792


title: Breast tumor tissue Sample783

source_name: breast tumor sample 783


title: Breast tumor tissue Sample798

source_name: breast tumor sample 798


title: Breast tumor tissue Sample781

source_name: breast tumor sample 781


title: Breast tumor tissue Sample785

source_name: breast tumor sample 785


title: Breast tumor tissue Sample789

source_name: breast tumor sample 789


title: Breast tumor tissue Sample784

source_name: breast tumor sample 784


title: Breast tumor tissue Sample786

source_name: breast tumor sample 786


title: Breast tumor tissue Sample788

source_name: breast tumor sample 788


title: Breast tumor tissue Sample782

source_name: breast tumor sample 782


title: Breast tumor tissue Sample780

source_name: breast tumor sample 780


title: Breast tumor tissue Sample775

source_name: breast tumor sample 775


title: Breast tumor tissue Sample771

source_name: breast tumor sample 771


title: Breast tumor tissue Sample776

source_name: breast tumor sample 776


title: Breast tumor tissue Sample779

source_name: breast tumor sample 779


title: Breast tumor tissue Sample769

source_name: breast tumor sample 769


title: Breast tumor tissue Sample777

source_name: breast tumor sample 777


title: Breast tumor tissue Sample773

source_name: breast tumor sample 773


title: Breast tumor tissue Sample774

source_name: breast tumor sample 774


title: Breast tumor tissue Sample765

source_name: breast tumor sample 765


title: Breast tumor tissue Sample772

source_name: breast tumor sample 772


title: Breast tumor tissue Sample762

source_name: breast tumor sample 762


title: Breast tumor tissue Sample761

source_name: breast tumor sample 761


title: Breast tumor tissue Sample778

source_name: breast tumor sample 778


title: Breast tumor tissue Sample766

source_name: breast tumor sample 766


title: Breast tumor tissue Sample764

source_name: breast tumor sample 764


title: Breast tumor tissue Sample767

source_name: breast tumor sample 767


title: Breast tumor tissue Sample770

source_name: breast tumor sample 770


title: Breast tumor tissue Sample759

source_name: breast tumor sample 759


title: Breast tumor tissue Sample768

source_name: breast tumor sample 768


title: Breast tumor tissue Sample753

source_name: breast tumor sample 753


title: Breast tumor tissue Sample757

source_name: breast tumor sample 757


title: Breast tumor tissue Sample756

source_name: breast tumor sample 756


title: Breast tumor tissue Sample751

source_name: breast tumor sample 751


title: Breast tumor tissue Sample758

source_name: breast tumor sample 758


title: Breast tumor tissue Sample750

source_name: breast tumor sample 750


title: Breast tumor tissue Sample754

source_name: breast tumor sample 754


title: Breast tumor tissue Sample748

source_name: breast tumor sample 748


title: Breast tumor tissue Sample746

source_name: breast tumor sample 746


title: Breast tumor tissue Sample752

source_name: breast tumor sample 752


title: Breast tumor tissue Sample760

source_name: breast tumor sample 760


title: Breast tumor tissue Sample747

source_name: breast tumor sample 747


title: Breast tumor tissue Sample743

source_name: breast tumor sample 743


title: Breast tumor tissue Sample745

source_name: breast tumor sample 745


title: Breast tumor tissue Sample755

source_name: breast tumor sample 755


title: Breast tumor tissue Sample744

source_name: breast tumor sample 744


title: Breast tumor tissue Sample742

source_name: breast tumor sample 742


title: Breast tumor tissue Sample736

source_name: breast tumor sample 736


title: Breast tumor tissue Sample737

source_name: breast tumor sample 737


title: Breast tumor tissue Sample730

source_name: breast tumor sample 730


title: Breast tumor tissue Sample739

source_name: breast tumor sample 739


title: Breast tumor tissue Sample741

source_name: breast tumor sample 741


title: Breast tumor tissue Sample731

source_name: breast tumor sample 731


title: Breast tumor tissue Sample732

source_name: breast tumor sample 732


title: Breast tumor tissue Sample740

source_name: breast tumor sample 740


title: Breast tumor tissue Sample723

source_name: breast tumor sample 723


title: Breast tumor tissue Sample722

source_name: breast tumor sample 722


title: Breast tumor tissue Sample735

source_name: breast tumor sample 735


title: Breast tumor tissue Sample724

source_name: breast tumor sample 724


title: Breast tumor tissue Sample749

source_name: breast tumor sample 749


title: Breast tumor tissue Sample729

source_name: breast tumor sample 729


title: Breast tumor tissue Sample718

source_name: breast tumor sample 718


title: Breast tumor tissue Sample721

source_name: breast tumor sample 721


title: Breast tumor tissue Sample727

source_name: breast tumor sample 727


title: Breast tumor tissue Sample728

source_name: breast tumor sample 728


title: Breast tumor tissue Sample734

source_name: breast tumor sample 734


title: Breast tumor tissue Sample725

source_name: breast tumor sample 725


title: Breast tumor tissue Sample716

source_name: breast tumor sample 716


title: Breast tumor tissue Sample720

source_name: breast tumor sample 720


title: Breast tumor tissue Sample726

source_name: breast tumor sample 726


title: Breast tumor tissue Sample733

source_name: breast tumor sample 733


title: Breast tumor tissue Sample717

source_name: breast tumor sample 717


title: Breast tumor tissue Sample715

source_name: breast tumor sample 715


title: Breast tumor tissue Sample714

source_name: breast tumor sample 714


title: Breast tumor tissue Sample719

source_name: breast tumor sample 719


title: Breast tumor tissue Sample712

source_name: breast tumor sample 712


title: Breast tumor tissue Sample713

source_name: breast tumor sample 713


title: Breast tumor tissue Sample738

source_name: breast tumor sample 738


title: Breast tumor tissue Sample710

source_name: breast tumor sample 710


title: Breast tumor tissue Sample763

source_name: breast tumor sample 763


title: Breast tumor tissue Sample711

source_name: breast tumor sample 711


title: Breast tumor tissue Sample706

source_name: breast tumor sample 706


title: Breast tumor tissue Sample705

source_name: breast tumor sample 705


title: Breast tumor tissue Sample703

source_name: breast tumor sample 703


title: Breast tumor tissue Sample697

source_name: breast tumor sample 697


title: Breast tumor tissue Sample709

source_name: breast tumor sample 709


title: Breast tumor tissue Sample702

source_name: breast tumor sample 702


title: Breast tumor tissue Sample704

source_name: breast tumor sample 704


title: Breast tumor tissue Sample696

source_name: breast tumor sample 696


title: Breast tumor tissue Sample707

source_name: breast tumor sample 707


title: Breast tumor tissue Sample708

source_name: breast tumor sample 708


title: Breast tumor tissue Sample687

source_name: breast tumor sample 687


title: Breast tumor tissue Sample699

source_name: breast tumor sample 699


title: Breast tumor tissue Sample701

source_name: breast tumor sample 701


title: Breast tumor tissue Sample700

source_name: breast tumor sample 700


title: Breast tumor tissue Sample691

source_name: breast tumor sample 691


title: Breast tumor tissue Sample693

source_name: breast tumor sample 693


title: Breast tumor tissue Sample689

source_name: breast tumor sample 689


title: Breast tumor tissue Sample690

source_name: breast tumor sample 690


title: Breast tumor tissue Sample695

source_name: breast tumor sample 695


title: Breast tumor tissue Sample692

source_name: breast tumor sample 692


title: Breast tumor tissue Sample688

source_name: breast tumor sample 688


title: Breast tumor tissue Sample698

source_name: breast tumor sample 698


title: Breast tumor tissue Sample694

source_name: breast tumor sample 694


title: Breast tumor tissue Sample681

source_name: breast tumor sample 681


title: Breast tumor tissue Sample682

source_name: breast tumor sample 682


title: Breast tumor tissue Sample686

source_name: breast tumor sample 686


title: Breast tumor tissue Sample679

source_name: breast tumor sample 679


title: Breast tumor tissue Sample678

source_name: breast tumor sample 678


title: Breast tumor tissue Sample676

source_name: breast tumor sample 676


title: Breast tumor tissue Sample684

source_name: breast tumor sample 684


title: Breast tumor tissue Sample685

source_name: breast tumor sample 685


title: Breast tumor tissue Sample673

source_name: breast tumor sample 673


title: Breast tumor tissue Sample677

source_name: breast tumor sample 677


title: Breast tumor tissue Sample670

source_name: breast tumor sample 670


title: Breast tumor tissue Sample675

source_name: breast tumor sample 675


title: Breast tumor tissue Sample680

source_name: breast tumor sample 680


title: Breast tumor tissue Sample666

source_name: breast tumor sample 666


title: Breast tumor tissue Sample665

source_name: breast tumor sample 665


title: Breast tumor tissue Sample661

source_name: breast tumor sample 661


title: Breast tumor tissue Sample674

source_name: breast tumor sample 674


title: Breast tumor tissue Sample667

source_name: breast tumor sample 667


title: Breast tumor tissue Sample657

source_name: breast tumor sample 657


title: Breast tumor tissue Sample683

source_name: breast tumor sample 683


title: Breast tumor tissue Sample664

source_name: breast tumor sample 664


title: Breast tumor tissue Sample658

source_name: breast tumor sample 658


title: Breast tumor tissue Sample659

source_name: breast tumor sample 659


title: Breast tumor tissue Sample668

source_name: breast tumor sample 668


title: Breast tumor tissue Sample669

source_name: breast tumor sample 669


title: Breast tumor tissue Sample663

source_name: breast tumor sample 663


title: Breast tumor tissue Sample662

source_name: breast tumor sample 662


title: Breast tumor tissue Sample656

source_name: breast tumor sample 656


title: Breast tumor tissue Sample672

source_name: breast tumor sample 672


title: Breast tumor tissue Sample671

source_name: breast tumor sample 671


title: Breast tumor tissue Sample660

source_name: breast tumor sample 660


title: Breast tumor tissue Sample651

source_name: breast tumor sample 651


title: Breast tumor tissue Sample654

source_name: breast tumor sample 654


title: Breast tumor tissue Sample653

source_name: breast tumor sample 653


title: Breast tumor tissue Sample652

source_name: breast tumor sample 652


title: Breast tumor tissue Sample650

source_name: breast tumor sample 650


title: Breast tumor tissue Sample649

source_name: breast tumor sample 649


title: Breast tumor tissue Sample648

source_name: breast tumor sample 648


title: Breast tumor tissue Sample643

source_name: breast tumor sample 643


title: Breast tumor tissue Sample641

source_name: breast tumor sample 641


title: Breast tumor tissue Sample642

source_name: breast tumor sample 642


title: Breast tumor tissue Sample655

source_name: breast tumor sample 655


title: Breast tumor tissue Sample634

source_name: breast tumor sample 634


title: Breast tumor tissue Sample638

source_name: breast tumor sample 638


title: Breast tumor tissue Sample639

source_name: breast tumor sample 639


title: Breast tumor tissue Sample640

source_name: breast tumor sample 640


title: Breast tumor tissue Sample647

source_name: breast tumor sample 647


title: Breast tumor tissue Sample633

source_name: breast tumor sample 633


title: Breast tumor tissue Sample635

source_name: breast tumor sample 635


title: Breast tumor tissue Sample636

source_name: breast tumor sample 636


title: Breast tumor tissue Sample637

source_name: breast tumor sample 637


title: Breast tumor tissue Sample646

source_name: breast tumor sample 646


title: Breast tumor tissue Sample632

source_name: breast tumor sample 632


title: Breast tumor tissue Sample645

source_name: breast tumor sample 645


title: Breast tumor tissue Sample631

source_name: breast tumor sample 631


title: Breast tumor tissue Sample629

source_name: breast tumor sample 629


title: Breast tumor tissue Sample630

source_name: breast tumor sample 630


title: Breast tumor tissue Sample644

source_name: breast tumor sample 644


title: Breast tumor tissue Sample622

source_name: breast tumor sample 622


title: Breast tumor tissue Sample621

source_name: breast tumor sample 621


title: Breast tumor tissue Sample624

source_name: breast tumor sample 624


title: Breast tumor tissue Sample627

source_name: breast tumor sample 627


title: Breast tumor tissue Sample628

source_name: breast tumor sample 628


title: Breast tumor tissue Sample623

source_name: breast tumor sample 623


title: Breast tumor tissue Sample619

source_name: breast tumor sample 619


title: Breast tumor tissue Sample626

source_name: breast tumor sample 626


title: Breast tumor tissue Sample625

source_name: breast tumor sample 625


title: Breast tumor tissue Sample603

source_name: breast tumor sample 603


title: Breast tumor tissue Sample614

source_name: breast tumor sample 614


title: Breast tumor tissue Sample613

source_name: breast tumor sample 613


title: Breast tumor tissue Sample605

source_name: breast tumor sample 605


title: Breast tumor tissue Sample606

source_name: breast tumor sample 606


title: Breast tumor tissue Sample616

source_name: breast tumor sample 616


title: Breast tumor tissue Sample610

source_name: breast tumor sample 610


title: Breast tumor tissue Sample612

source_name: breast tumor sample 612


title: Breast tumor tissue Sample620

source_name: breast tumor sample 620


title: Breast tumor tissue Sample608

source_name: breast tumor sample 608


title: Breast tumor tissue Sample617

source_name: breast tumor sample 617


title: Breast tumor tissue Sample611

source_name: breast tumor sample 611


title: Breast tumor tissue Sample601

source_name: breast tumor sample 601


title: Breast tumor tissue Sample604

source_name: breast tumor sample 604


title: Breast tumor tissue Sample598

source_name: breast tumor sample 598


title: Breast tumor tissue Sample599

source_name: breast tumor sample 599


title: Breast tumor tissue Sample594

source_name: breast tumor sample 594


title: Breast tumor tissue Sample600

source_name: breast tumor sample 600


title: Breast tumor tissue Sample595

source_name: breast tumor sample 595


title: Breast tumor tissue Sample609

source_name: breast tumor sample 609


title: Breast tumor tissue Sample597

source_name: breast tumor sample 597


title: Breast tumor tissue Sample618

source_name: breast tumor sample 618


title: Breast tumor tissue Sample615

source_name: breast tumor sample 615


title: Breast tumor tissue Sample593

source_name: breast tumor sample 593


title: Breast tumor tissue Sample590

source_name: breast tumor sample 590


title: Breast tumor tissue Sample602

source_name: breast tumor sample 602


title: Breast tumor tissue Sample607

source_name: breast tumor sample 607


title: Breast tumor tissue Sample588

source_name: breast tumor sample 588


title: Breast tumor tissue Sample587

source_name: breast tumor sample 587


title: Breast tumor tissue Sample591

source_name: breast tumor sample 591


title: Breast tumor tissue Sample592

source_name: breast tumor sample 592


title: Breast tumor tissue Sample586

source_name: breast tumor sample 586


title: Breast tumor tissue Sample596

source_name: breast tumor sample 596


title: Breast tumor tissue Sample578

source_name: breast tumor sample 578


title: Breast tumor tissue Sample577

source_name: breast tumor sample 577


title: Breast tumor tissue Sample573

source_name: breast tumor sample 573


title: Breast tumor tissue Sample589

source_name: breast tumor sample 589


title: Breast tumor tissue Sample579

source_name: breast tumor sample 579


title: Breast tumor tissue Sample580

source_name: breast tumor sample 580


title: Breast tumor tissue Sample571

source_name: breast tumor sample 571


title: Breast tumor tissue Sample585

source_name: breast tumor sample 585


title: Breast tumor tissue Sample581

source_name: breast tumor sample 581


title: Breast tumor tissue Sample584

source_name: breast tumor sample 584


title: Breast tumor tissue Sample575

source_name: breast tumor sample 575


title: Breast tumor tissue Sample582

source_name: breast tumor sample 582


title: Breast tumor tissue Sample568

source_name: breast tumor sample 568


title: Breast tumor tissue Sample576

source_name: breast tumor sample 576


title: Breast tumor tissue Sample572

source_name: breast tumor sample 572


title: Breast tumor tissue Sample569

source_name: breast tumor sample 569


title: Breast tumor tissue Sample574

source_name: breast tumor sample 574


title: Breast tumor tissue Sample570

source_name: breast tumor sample 570


title: Breast tumor tissue Sample583

source_name: breast tumor sample 583


title: Breast tumor tissue Sample559

source_name: breast tumor sample 559


title: Breast tumor tissue Sample567

source_name: breast tumor sample 567


title: Breast tumor tissue Sample557

source_name: breast tumor sample 557


title: Breast tumor tissue Sample555

source_name: breast tumor sample 555


title: Breast tumor tissue Sample560

source_name: breast tumor sample 560


title: Breast tumor tissue Sample565

source_name: breast tumor sample 565


title: Breast tumor tissue Sample566

source_name: breast tumor sample 566


title: Breast tumor tissue Sample552

source_name: breast tumor sample 552


title: Breast tumor tissue Sample554

source_name: breast tumor sample 554


title: Breast tumor tissue Sample543

source_name: breast tumor sample 543


title: Breast tumor tissue Sample553

source_name: breast tumor sample 553


title: Breast tumor tissue Sample561

source_name: breast tumor sample 561


title: Breast tumor tissue Sample551

source_name: breast tumor sample 551


title: Breast tumor tissue Sample548

source_name: breast tumor sample 548


title: Breast tumor tissue Sample547

source_name: breast tumor sample 547


title: Breast tumor tissue Sample545

source_name: breast tumor sample 545


title: Breast tumor tissue Sample544

source_name: breast tumor sample 544


title: Breast tumor tissue Sample546

source_name: breast tumor sample 546


title: Breast tumor tissue Sample541

source_name: breast tumor sample 541


title: Breast tumor tissue Sample538

source_name: breast tumor sample 538


title: Breast tumor tissue Sample540

source_name: breast tumor sample 540


title: Breast tumor tissue Sample564

source_name: breast tumor sample 564


title: Breast tumor tissue Sample558

source_name: breast tumor sample 558


title: Breast tumor tissue Sample535

source_name: breast tumor sample 535


title: Breast tumor tissue Sample537

source_name: breast tumor sample 537


title: Breast tumor tissue Sample539

source_name: breast tumor sample 539


title: Breast tumor tissue Sample556

source_name: breast tumor sample 556


title: Breast tumor tissue Sample542

source_name: breast tumor sample 542


title: Breast tumor tissue Sample562

source_name: breast tumor sample 562


title: Breast tumor tissue Sample534

source_name: breast tumor sample 534


title: Breast tumor tissue Sample530

source_name: breast tumor sample 530


title: Breast tumor tissue Sample550

source_name: breast tumor sample 550


title: Breast tumor tissue Sample531

source_name: breast tumor sample 531


title: Breast tumor tissue Sample549

source_name: breast tumor sample 549


title: Breast tumor tissue Sample533

source_name: breast tumor sample 533


title: Breast tumor tissue Sample532

source_name: breast tumor sample 532


title: Breast tumor tissue Sample528

source_name: breast tumor sample 528


title: Breast tumor tissue Sample536

source_name: breast tumor sample 536


title: Breast tumor tissue Sample529

source_name: breast tumor sample 529


title: Breast tumor tissue Sample563

source_name: breast tumor sample 563


title: Breast tumor tissue Sample524

source_name: breast tumor sample 524


title: Breast tumor tissue Sample527

source_name: breast tumor sample 527


title: Breast tumor tissue Sample525

source_name: breast tumor sample 525


title: Breast tumor tissue Sample523

source_name: breast tumor sample 523


title: Breast tumor tissue Sample522

source_name: breast tumor sample 522


title: Breast tumor tissue Sample520

source_name: breast tumor sample 520


title: Breast tumor tissue Sample521

source_name: breast tumor sample 521


title: Breast tumor tissue Sample526

source_name: breast tumor sample 526


title: Breast tumor tissue Sample518

source_name: breast tumor sample 518


title: Breast tumor tissue Sample515

source_name: breast tumor sample 515


title: Breast tumor tissue Sample519

source_name: breast tumor sample 519


title: Breast tumor tissue Sample517

source_name: breast tumor sample 517


title: Breast tumor tissue Sample514

source_name: breast tumor sample 514


title: Breast tumor tissue Sample516

source_name: breast tumor sample 516


title: Breast tumor tissue Sample512

source_name: breast tumor sample 512


title: Breast tumor tissue Sample508

source_name: breast tumor sample 508


title: Breast tumor tissue Sample513

source_name: breast tumor sample 513


title: Breast tumor tissue Sample507

source_name: breast tumor sample 507


title: Breast tumor tissue Sample509

source_name: breast tumor sample 509


title: Breast tumor tissue Sample510

source_name: breast tumor sample 510


title: Breast tumor tissue Sample505

source_name: breast tumor sample 505


title: Breast tumor tissue Sample504

source_name: breast tumor sample 504


title: Breast tumor tissue Sample501

source_name: breast tumor sample 501


title: Breast tumor tissue Sample503

source_name: breast tumor sample 503


title: Breast tumor tissue Sample497

source_name: breast tumor sample 497


title: Breast tumor tissue Sample500

source_name: breast tumor sample 500


title: Breast tumor tissue Sample502

source_name: breast tumor sample 502


title: Breast tumor tissue Sample498

source_name: breast tumor sample 498


title: Breast tumor tissue Sample499

source_name: breast tumor sample 499


title: Breast tumor tissue Sample511

source_name: breast tumor sample 511


title: Breast tumor tissue Sample496

source_name: breast tumor sample 496


title: Breast tumor tissue Sample490

source_name: breast tumor sample 490


title: Breast tumor tissue Sample489

source_name: breast tumor sample 489


title: Breast tumor tissue Sample492

source_name: breast tumor sample 492


title: Breast tumor tissue Sample487

source_name: breast tumor sample 487


title: Breast tumor tissue Sample494

source_name: breast tumor sample 494


title: Breast tumor tissue Sample493

source_name: breast tumor sample 493


title: Breast tumor tissue Sample495

source_name: breast tumor sample 495


title: Breast tumor tissue Sample488

source_name: breast tumor sample 488


title: Breast tumor tissue Sample485

source_name: breast tumor sample 485


title: Breast tumor tissue Sample484

source_name: breast tumor sample 484


title: Breast tumor tissue Sample486

source_name: breast tumor sample 486


title: Breast tumor tissue Sample491

source_name: breast tumor sample 491


title: Breast tumor tissue Sample506

source_name: breast tumor sample 506


title: Breast tumor tissue Sample483

source_name: breast tumor sample 483


title: Breast tumor tissue Sample482

source_name: breast tumor sample 482


title: Breast tumor tissue Sample479

source_name: breast tumor sample 479


title: Breast tumor tissue Sample481

source_name: breast tumor sample 481


title: Breast tumor tissue Sample473

source_name: breast tumor sample 473


title: Breast tumor tissue Sample478

source_name: breast tumor sample 478


title: Breast tumor tissue Sample480

source_name: breast tumor sample 480


title: Breast tumor tissue Sample472

source_name: breast tumor sample 472


title: Breast tumor tissue Sample469

source_name: breast tumor sample 469


title: Breast tumor tissue Sample476

source_name: breast tumor sample 476


title: Breast tumor tissue Sample464

source_name: breast tumor sample 464


title: Breast tumor tissue Sample457

source_name: breast tumor sample 457


title: Breast tumor tissue Sample461

source_name: breast tumor sample 461


title: Breast tumor tissue Sample456

source_name: breast tumor sample 456


title: Breast tumor tissue Sample470

source_name: breast tumor sample 470


title: Breast tumor tissue Sample458

source_name: breast tumor sample 458


title: Breast tumor tissue Sample471

source_name: breast tumor sample 471


title: Breast tumor tissue Sample465

source_name: breast tumor sample 465


title: Breast tumor tissue Sample477

source_name: breast tumor sample 477


title: Breast tumor tissue Sample467

source_name: breast tumor sample 467


title: Breast tumor tissue Sample474

source_name: breast tumor sample 474


title: Breast tumor tissue Sample455

source_name: breast tumor sample 455


title: Breast tumor tissue Sample468

source_name: breast tumor sample 468


title: Breast tumor tissue Sample475

source_name: breast tumor sample 475


title: Breast tumor tissue Sample459

source_name: breast tumor sample 459


title: Breast tumor tissue Sample460

source_name: breast tumor sample 460


title: Breast tumor tissue Sample453

source_name: breast tumor sample 453


title: Breast tumor tissue Sample452

source_name: breast tumor sample 452


title: Breast tumor tissue Sample451

source_name: breast tumor sample 451


title: Breast tumor tissue Sample466

source_name: breast tumor sample 466


title: Breast tumor tissue Sample454

source_name: breast tumor sample 454


title: Breast tumor tissue Sample462

source_name: breast tumor sample 462


title: Breast tumor tissue Sample450

source_name: breast tumor sample 450


title: Breast tumor tissue Sample449

source_name: breast tumor sample 449


title: Breast tumor tissue Sample448

source_name: breast tumor sample 448


title: Breast tumor tissue Sample447

source_name: breast tumor sample 447


title: Breast tumor tissue Sample463

source_name: breast tumor sample 463


title: Breast tumor tissue Sample446

source_name: breast tumor sample 446


title: Breast tumor tissue Sample443

source_name: breast tumor sample 443


title: Breast tumor tissue Sample441

source_name: breast tumor sample 441


title: Breast tumor tissue Sample445

source_name: breast tumor sample 445


title: Breast tumor tissue Sample428

source_name: breast tumor sample 428


title: Breast tumor tissue Sample437

source_name: breast tumor sample 437


title: Breast tumor tissue Sample433

source_name: breast tumor sample 433


title: Breast tumor tissue Sample440

source_name: breast tumor sample 440


title: Breast tumor tissue Sample427

source_name: breast tumor sample 427


title: Breast tumor tissue Sample438

source_name: breast tumor sample 438


title: Breast tumor tissue Sample429

source_name: breast tumor sample 429


title: Breast tumor tissue Sample436

source_name: breast tumor sample 436


title: Breast tumor tissue Sample426

source_name: breast tumor sample 426


title: Breast tumor tissue Sample435

source_name: breast tumor sample 435


title: Breast tumor tissue Sample432

source_name: breast tumor sample 432


title: Breast tumor tissue Sample431

source_name: breast tumor sample 431


title: Breast tumor tissue Sample434

source_name: breast tumor sample 434


title: Breast tumor tissue Sample422

source_name: breast tumor sample 422


title: Breast tumor tissue Sample421

source_name: breast tumor sample 421


title: Breast tumor tissue Sample424

source_name: breast tumor sample 424


title: Breast tumor tissue Sample439

source_name: breast tumor sample 439


title: Breast tumor tissue Sample430

source_name: breast tumor sample 430


title: Breast tumor tissue Sample423

source_name: breast tumor sample 423


title: Breast tumor tissue Sample425

source_name: breast tumor sample 425


title: Breast tumor tissue Sample419

source_name: breast tumor sample 419


title: Breast tumor tissue Sample420

source_name: breast tumor sample 420


title: Breast tumor tissue Sample442

source_name: breast tumor sample 442


title: Breast tumor tissue Sample418

source_name: breast tumor sample 418


title: Breast tumor tissue Sample444

source_name: breast tumor sample 444


title: Breast tumor tissue Sample415

source_name: breast tumor sample 415


title: Breast tumor tissue Sample416

source_name: breast tumor sample 416


title: Breast tumor tissue Sample414

source_name: breast tumor sample 414


title: Breast tumor tissue Sample413

source_name: breast tumor sample 413


title: Breast tumor tissue Sample411

source_name: breast tumor sample 411


title: Breast tumor tissue Sample409

source_name: breast tumor sample 409


title: Breast tumor tissue Sample412

source_name: breast tumor sample 412


title: Breast tumor tissue Sample410

source_name: breast tumor sample 410


title: Breast tumor tissue Sample403

source_name: breast tumor sample 403


title: Breast tumor tissue Sample404

source_name: breast tumor sample 404


title: Breast tumor tissue Sample406

source_name: breast tumor sample 406


title: Breast tumor tissue Sample402

source_name: breast tumor sample 402


title: Breast tumor tissue Sample407

source_name: breast tumor sample 407


title: Breast tumor tissue Sample408

source_name: breast tumor sample 408


title: Breast tumor tissue Sample399

source_name: breast tumor sample 399


title: Breast tumor tissue Sample401

source_name: breast tumor sample 401


title: Breast tumor tissue Sample393

source_name: breast tumor sample 393


title: Breast tumor tissue Sample395

source_name: breast tumor sample 395


title: Breast tumor tissue Sample400

source_name: breast tumor sample 400


title: Breast tumor tissue Sample396

source_name: breast tumor sample 396


title: Breast tumor tissue Sample405

source_name: breast tumor sample 405


title: Breast tumor tissue Sample388

source_name: breast tumor sample 388


title: Breast tumor tissue Sample397

source_name: breast tumor sample 397


title: Breast tumor tissue Sample389

source_name: breast tumor sample 389


title: Breast tumor tissue Sample417

source_name: breast tumor sample 417


title: Breast tumor tissue Sample398

source_name: breast tumor sample 398


title: Breast tumor tissue Sample390

source_name: breast tumor sample 390


title: Breast tumor tissue Sample394

source_name: breast tumor sample 394


title: Breast tumor tissue Sample385

source_name: breast tumor sample 385


title: Breast tumor tissue Sample386

source_name: breast tumor sample 386


title: Breast tumor tissue Sample387

source_name: breast tumor sample 387


title: Breast tumor tissue Sample391

source_name: breast tumor sample 391


title: Breast tumor tissue Sample392

source_name: breast tumor sample 392


title: Breast tumor tissue Sample384

source_name: breast tumor sample 384


title: Breast tumor tissue Sample382

source_name: breast tumor sample 382


title: Breast tumor tissue Sample381

source_name: breast tumor sample 381


title: Breast tumor tissue Sample380

source_name: breast tumor sample 380


title: Breast tumor tissue Sample379

source_name: breast tumor sample 379


title: Breast tumor tissue Sample378

source_name: breast tumor sample 378


title: Breast tumor tissue Sample377

source_name: breast tumor sample 377


title: Breast tumor tissue Sample374

source_name: breast tumor sample 374


title: Breast tumor tissue Sample376

source_name: breast tumor sample 376


title: Breast tumor tissue Sample367

source_name: breast tumor sample 367


title: Breast tumor tissue Sample371

source_name: breast tumor sample 371


title: Breast tumor tissue Sample372

source_name: breast tumor sample 372


title: Breast tumor tissue Sample365

source_name: breast tumor sample 365


title: Breast tumor tissue Sample369

source_name: breast tumor sample 369


title: Breast tumor tissue Sample361

source_name: breast tumor sample 361


title: Breast tumor tissue Sample368

source_name: breast tumor sample 368


title: Breast tumor tissue Sample362

source_name: breast tumor sample 362


title: Breast tumor tissue Sample373

source_name: breast tumor sample 373


title: Breast tumor tissue Sample375

source_name: breast tumor sample 375


title: Breast tumor tissue Sample352

source_name: breast tumor sample 352


title: Breast tumor tissue Sample355

source_name: breast tumor sample 355


title: Breast tumor tissue Sample358

source_name: breast tumor sample 358


title: Breast tumor tissue Sample364

source_name: breast tumor sample 364


title: Breast tumor tissue Sample370

source_name: breast tumor sample 370


title: Breast tumor tissue Sample359

source_name: breast tumor sample 359


title: Breast tumor tissue Sample363

source_name: breast tumor sample 363


title: Breast tumor tissue Sample351

source_name: breast tumor sample 351


title: Breast tumor tissue Sample357

source_name: breast tumor sample 357


title: Breast tumor tissue Sample353

source_name: breast tumor sample 353


title: Breast tumor tissue Sample356

source_name: breast tumor sample 356


title: Breast tumor tissue Sample354

source_name: breast tumor sample 354


title: Breast tumor tissue Sample360

source_name: breast tumor sample 360


title: Breast tumor tissue Sample366

source_name: breast tumor sample 366


title: Breast tumor tissue Sample348

source_name: breast tumor sample 348


title: Breast tumor tissue Sample350

source_name: breast tumor sample 350


title: Breast tumor tissue Sample339

source_name: breast tumor sample 339


title: Breast tumor tissue Sample340

source_name: breast tumor sample 340


title: Breast tumor tissue Sample346

source_name: breast tumor sample 346


title: Breast tumor tissue Sample383

source_name: breast tumor sample 383


title: Breast tumor tissue Sample333

source_name: breast tumor sample 333


title: Breast tumor tissue Sample332

source_name: breast tumor sample 332


title: Breast tumor tissue Sample326

source_name: breast tumor sample 326


title: Breast tumor tissue Sample338

source_name: breast tumor sample 338


title: Breast tumor tissue Sample345

source_name: breast tumor sample 345


title: Breast tumor tissue Sample325

source_name: breast tumor sample 325


title: Breast tumor tissue Sample349

source_name: breast tumor sample 349


title: Breast tumor tissue Sample335

source_name: breast tumor sample 335


title: Breast tumor tissue Sample337

source_name: breast tumor sample 337


title: Breast tumor tissue Sample341

source_name: breast tumor sample 341


title: Breast tumor tissue Sample329

source_name: breast tumor sample 329


title: Breast tumor tissue Sample331

source_name: breast tumor sample 331


title: Breast tumor tissue Sample330

source_name: breast tumor sample 330


title: Breast tumor tissue Sample334

source_name: breast tumor sample 334


title: Breast tumor tissue Sample327

source_name: breast tumor sample 327


title: Breast tumor tissue Sample328

source_name: breast tumor sample 328


title: Breast tumor tissue Sample336

source_name: breast tumor sample 336


title: Breast tumor tissue Sample347

source_name: breast tumor sample 347


title: Breast tumor tissue Sample324

source_name: breast tumor sample 324


title: Breast tumor tissue Sample342

source_name: breast tumor sample 342


title: Breast tumor tissue Sample321

source_name: breast tumor sample 321


title: Breast tumor tissue Sample320

source_name: breast tumor sample 320


title: Breast tumor tissue Sample311

source_name: breast tumor sample 311


title: Breast tumor tissue Sample323

source_name: breast tumor sample 323


title: Breast tumor tissue Sample313

source_name: breast tumor sample 313


title: Breast tumor tissue Sample314

source_name: breast tumor sample 314


title: Breast tumor tissue Sample322

source_name: breast tumor sample 322


title: Breast tumor tissue Sample343

source_name: breast tumor sample 343


title: Breast tumor tissue Sample308

source_name: breast tumor sample 308


title: Breast tumor tissue Sample344

source_name: breast tumor sample 344


title: Breast tumor tissue Sample312

source_name: breast tumor sample 312


title: Breast tumor tissue Sample317

source_name: breast tumor sample 317


title: Breast tumor tissue Sample304

source_name: breast tumor sample 304


title: Breast tumor tissue Sample298

source_name: breast tumor sample 298


title: Breast tumor tissue Sample307

source_name: breast tumor sample 307


title: Breast tumor tissue Sample301

source_name: breast tumor sample 301


title: Breast tumor tissue Sample299

source_name: breast tumor sample 299


title: Breast tumor tissue Sample303

source_name: breast tumor sample 303


title: Breast tumor tissue Sample315

source_name: breast tumor sample 315


title: Breast tumor tissue Sample305

source_name: breast tumor sample 305


title: Breast tumor tissue Sample309

source_name: breast tumor sample 309


title: Breast tumor tissue Sample302

source_name: breast tumor sample 302


title: Breast tumor tissue Sample316

source_name: breast tumor sample 316


title: Breast tumor tissue Sample297

source_name: breast tumor sample 297


title: Breast tumor tissue Sample310

source_name: breast tumor sample 310


title: Breast tumor tissue Sample319

source_name: breast tumor sample 319


title: Breast tumor tissue Sample296

source_name: breast tumor sample 296


title: Breast tumor tissue Sample293

source_name: breast tumor sample 293


title: Breast tumor tissue Sample295

source_name: breast tumor sample 295


title: Breast tumor tissue Sample306

source_name: breast tumor sample 306


title: Breast tumor tissue Sample291

source_name: breast tumor sample 291


title: Breast tumor tissue Sample318

source_name: breast tumor sample 318


title: Breast tumor tissue Sample286

source_name: breast tumor sample 286


title: Breast tumor tissue Sample288

source_name: breast tumor sample 288


title: Breast tumor tissue Sample294

source_name: breast tumor sample 294


title: Breast tumor tissue Sample287

source_name: breast tumor sample 287


title: Breast tumor tissue Sample292

source_name: breast tumor sample 292


title: Breast tumor tissue Sample283

source_name: breast tumor sample 283


title: Breast tumor tissue Sample289

source_name: breast tumor sample 289


title: Breast tumor tissue Sample290

source_name: breast tumor sample 290


title: Breast tumor tissue Sample279

source_name: breast tumor sample 279


title: Breast tumor tissue Sample278

source_name: breast tumor sample 278


title: Breast tumor tissue Sample280

source_name: breast tumor sample 280


title: Breast tumor tissue Sample275

source_name: breast tumor sample 275


title: Breast tumor tissue Sample282

source_name: breast tumor sample 282


title: Breast tumor tissue Sample271

source_name: breast tumor sample 271


title: Breast tumor tissue Sample285

source_name: breast tumor sample 285


title: Breast tumor tissue Sample272

source_name: breast tumor sample 272


title: Breast tumor tissue Sample277

source_name: breast tumor sample 277


title: Breast tumor tissue Sample300

source_name: breast tumor sample 300


title: Breast tumor tissue Sample273

source_name: breast tumor sample 273


title: Breast tumor tissue Sample274

source_name: breast tumor sample 274


title: Breast tumor tissue Sample269

source_name: breast tumor sample 269


title: Breast tumor tissue Sample281

source_name: breast tumor sample 281


title: Breast tumor tissue Sample276

source_name: breast tumor sample 276


title: Breast tumor tissue Sample270

source_name: breast tumor sample 270


title: Breast tumor tissue Sample268

source_name: breast tumor sample 268


title: Breast tumor tissue Sample264

source_name: breast tumor sample 264


title: Breast tumor tissue Sample267

source_name: breast tumor sample 267


title: Breast tumor tissue Sample263

source_name: breast tumor sample 263


title: Breast tumor tissue Sample266

source_name: breast tumor sample 266


title: Breast tumor tissue Sample260

source_name: breast tumor sample 260


title: Breast tumor tissue Sample262

source_name: breast tumor sample 262


title: Breast tumor tissue Sample259

source_name: breast tumor sample 259


title: Breast tumor tissue Sample258

source_name: breast tumor sample 258


title: Breast tumor tissue Sample257

source_name: breast tumor sample 257


title: Breast tumor tissue Sample253

source_name: breast tumor sample 253


title: Breast tumor tissue Sample284

source_name: breast tumor sample 284


title: Breast tumor tissue Sample255

source_name: breast tumor sample 255


title: Breast tumor tissue Sample256

source_name: breast tumor sample 256


title: Breast tumor tissue Sample244

source_name: breast tumor sample 244


title: Breast tumor tissue Sample254

source_name: breast tumor sample 254


title: Breast tumor tissue Sample252

source_name: breast tumor sample 252


title: Breast tumor tissue Sample249

source_name: breast tumor sample 249


title: Breast tumor tissue Sample243

source_name: breast tumor sample 243


title: Breast tumor tissue Sample248

source_name: breast tumor sample 248


title: Breast tumor tissue Sample245

source_name: breast tumor sample 245


title: Breast tumor tissue Sample237

source_name: breast tumor sample 237


title: Breast tumor tissue Sample242

source_name: breast tumor sample 242


title: Breast tumor tissue Sample238

source_name: breast tumor sample 238


title: Breast tumor tissue Sample265

source_name: breast tumor sample 265


title: Breast tumor tissue Sample247

source_name: breast tumor sample 247


title: Breast tumor tissue Sample232

source_name: breast tumor sample 232


title: Breast tumor tissue Sample246

source_name: breast tumor sample 246


title: Breast tumor tissue Sample239

source_name: breast tumor sample 239


title: Breast tumor tissue Sample241

source_name: breast tumor sample 241


title: Breast tumor tissue Sample234

source_name: breast tumor sample 234


title: Breast tumor tissue Sample240

source_name: breast tumor sample 240


title: Breast tumor tissue Sample250

source_name: breast tumor sample 250


title: Breast tumor tissue Sample236

source_name: breast tumor sample 236


title: Breast tumor tissue Sample231

source_name: breast tumor sample 231


title: Breast tumor tissue Sample235

source_name: breast tumor sample 235


title: Breast tumor tissue Sample233

source_name: breast tumor sample 233


title: Breast tumor tissue Sample228

source_name: breast tumor sample 228


title: Breast tumor tissue Sample229

source_name: breast tumor sample 229


title: Breast tumor tissue Sample226

source_name: breast tumor sample 226


title: Breast tumor tissue Sample227

source_name: breast tumor sample 227


title: Breast tumor tissue Sample230

source_name: breast tumor sample 230


title: Breast tumor tissue Sample223

source_name: breast tumor sample 223


title: Breast tumor tissue Sample222

source_name: breast tumor sample 222


title: Breast tumor tissue Sample225

source_name: breast tumor sample 225


title: Breast tumor tissue Sample251

source_name: breast tumor sample 251


title: Breast tumor tissue Sample215

source_name: breast tumor sample 215


title: Breast tumor tissue Sample219

source_name: breast tumor sample 219


title: Breast tumor tissue Sample220

source_name: breast tumor sample 220


title: Breast tumor tissue Sample221

source_name: breast tumor sample 221


title: Breast tumor tissue Sample218

source_name: breast tumor sample 218


title: Breast tumor tissue Sample217

source_name: breast tumor sample 217


title: Breast tumor tissue Sample212

source_name: breast tumor sample 212


title: Breast tumor tissue Sample261

source_name: breast tumor sample 261


title: Breast tumor tissue Sample214

source_name: breast tumor sample 214


title: Breast tumor tissue Sample205

source_name: breast tumor sample 205


title: Breast tumor tissue Sample216

source_name: breast tumor sample 216


title: F344 Control rep6

type: RNA

city: Toronto

first: Cindy

middle: Q.

last: Yao

state: Ontario

address: 101 College Street, Suite 800

country: Canada

institute: Ontario Institute for Cancer Research

description: Gender: Male,Tissue: liver,Strain: Fischer344,Age: 11-15 weeks,Treatment: Corn Oil vehicle,Exposure: 19 hours

hyb_protocol: standard Affymetrix protocol

scan_protocol: standard Affymetrix protocol

data_processing: Quantitated array data (CEL files) were loaded into the R statistical environment (v2.12.2) using the Affy package (v1.28.0) of the BioConductor library. Data was investigated for spatial and distributional homogeneity, then pre-processed with a sequence-specific version of the RMA algorithm termed GCRMA, as implemented in R (v2.22.0). We employed an updated remapping of Probes to Entrez Gene IDs as implemented in the R package rat2302rnentrezgcdf (v13.0.0) and rae230arnentrezgcdf (v13.0.0).

molecule: total RNA

organism: Rattus norvegicus

source_name: liver, Fischer344, Corn Oil treated, 19 hour exposure

label_protocol: standard Affymetrix protocol

growth_protocol: Animals were grown in a 12h/12h light/dark cycle housed singly in stainless-steel wire-mesh cages with pelleted R36 feed and tap water. The temperature was 21.5 +/- 1 degree Celcius and humidity at 55% +/- 10%.

extract_protocol: Total RNA was extracted using Qiagen RNeasy kits according to the manufacturer’s instructions (Qiagen, Mississauga, Canada). Total RNA yield was quantified by UV spectrophotometry and RNA integrity was verified using an Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).

treatment_protocol: TCDD treated animals were treated with 100 ug/kg TCDD by oral gavage.

tag: gender

value: Male

value: liver

tag: strain

tag: age

tag: treatment

value: Corn Oil vehicle

tag: time

value: 19 hours


title: F344 Control rep5


title: Breast tumor tissue Sample202

source_name: breast tumor sample 202


title: Breast tumor tissue Sample204

source_name: breast tumor sample 204


title: Breast tumor tissue Sample207

source_name: breast tumor sample 207


title: F344 TCDD rep5

description: Gender: Male,Tissue: liver,Strain: Fischer344,Age: 11-15 weeks,Treatment: 100 ug/kg TCDD,Exposure: 19 hours

source_name: liver, Fischer344, TCDD treated, 19 hour exposure

value: 100 ug/kg TCDD


title: Breast tumor tissue Sample199

source_name: breast tumor sample 199


title: Breast tumor tissue Sample206

source_name: breast tumor sample 206


title: Breast tumor tissue Sample213

source_name: breast tumor sample 213


title: Breast tumor tissue Sample208

source_name: breast tumor sample 208


title: F344 Control rep3


title: F344 TCDD rep6


title: Breast tumor tissue Sample203

source_name: breast tumor sample 203


title: Breast tumor tissue Sample201

source_name: breast tumor sample 201


title: Breast tumor tissue Sample211

source_name: breast tumor sample 211


title: Breast tumor tissue Sample197

source_name: breast tumor sample 197


title: Breast tumor tissue Sample198

source_name: breast tumor sample 198


title: F344 Control rep4


title: Breast tumor tissue Sample209

source_name: breast tumor sample 209


title: Breast tumor tissue Sample196

source_name: breast tumor sample 196


title: F344 TCDD rep4


title: F344 TCDD rep3


title: Breast tumor tissue Sample194

source_name: breast tumor sample 194


title: Breast tumor tissue Sample195

source_name: breast tumor sample 195


title: Breast tumor tissue Sample200

source_name: breast tumor sample 200


title: F344 Control rep1

source_name: liver, Fischer344, Corn Oil treated, 19 hour exposure


title: F344 Control rep2


title: Wistar TCDD rep6

description: Gender: Male,Tissue: liver,Strain: Wistar,Age: 11-15 weeks,Treatment: 100 ug/kg TCDD,Exposure: 19 hours

source_name: liver, Wistar, TCDD treated, 19 hour exposure

value: Wistar


title: F344 TCDD rep1

source_name: liver, Fischer344, TCDD treated, 19 hour exposure


title: Breast tumor tissue Sample193

source_name: breast tumor sample 193


title: Wistar Control rep5

description: Gender: Male,Tissue: liver,Strain: Wistar,Age: 11-15 weeks,Treatment: Corn Oil vehicle,Exposure: 19 hours

source_name: liver, Wistar, Corn Oil treated, 19 hour exposure


title: Wistar TCDD rep4


title: Wistar Control rep4


title: Breast tumor tissue Sample190

source_name: breast tumor sample 190


title: Breast tumor tissue Sample192

source_name: breast tumor sample 192


title: Wistar Control rep6


title: Breast tumor tissue Sample191

source_name: breast tumor sample 191


title: Wistar TCDD rep5


title: Breast tumor tissue Sample186

source_name: breast tumor sample 186


title: Breast tumor tissue Sample210

source_name: breast tumor sample 210


title: Breast tumor tissue Sample188

source_name: breast tumor sample 188


title: Breast tumor tissue Sample187

source_name: breast tumor sample 187


title: Breast tumor tissue Sample189

source_name: breast tumor sample 189


title: Breast tumor tissue Sample184

source_name: breast tumor sample 184


title: Breast tumor tissue Sample183

source_name: breast tumor sample 183


title: Breast tumor tissue Sample182

source_name: breast tumor sample 182


title: Breast tumor tissue Sample181

source_name: breast tumor sample 181


title: Wistar Control rep3


title: Wistar TCDD rep3


title: Breast tumor tissue Sample185

source_name: breast tumor sample 185


title: Wistar Control rep2


title: Breast tumor tissue Sample179

source_name: breast tumor sample 179


title: Wistar TCDD rep1

source_name: liver, Wistar, TCDD treated, 19 hour exposure


title: F344 TCDD rep2

source_name: liver, Fischer344, TCDD treated, 19 hour exposure


title: Wistar Control rep1

source_name: liver, Wistar, Corn Oil treated, 19 hour exposure


title: Breast tumor tissue Sample180

source_name: breast tumor sample 180


title: Breast tumor tissue Sample178

source_name: breast tumor sample 178


title: Breast tumor tissue Sample177

source_name: breast tumor sample 177


title: Breast tumor tissue Sample224

source_name: breast tumor sample 224


title: Cumulus enclosed vs. cumulus denuded oocytes slide13903772_CEO4cy5-CDO4cy3

city: Nouzilly

first: Svetlana

last: UZBEKOVA

address: PRC INRA

country: France

institute: INRA

hyb_protocol: 50 pmol of each condition (CEO and CDO) were then fragmented for 15 minutes at 70°C using the RNA Fragmentation Reagents (Ambion, Austin, USA) and then stop with Stop solution. Hybridization was realized using SlideBooster apparatus (Advalytix, Beckman Coulter Biomedical GmbH, Germany).

scan_protocol: Microarrays were scanned using an Agilent scanner (Agilent Technologies).

data_processing: Data acquisition was performed using GenePix Pro 6.0 (Axon Molecular Devices, Sunnyvale, CA, USA).

organism: Bos taurus

source_name: cow oocyte, mature metaphase-II, CDO replicate4

label_protocol: 2 µg of each sample were labelled using the ULS aRNA labelling kit (Kreatech, Amsterdam, Netherlands) according manufacturer’s instructions. A dye swap approach was used by labelling CEO and CDO alternatively by cyanine 3 and 5.

growth_protocol: Bovine ovaries were collected from a slaughterhouse; 3-6 mm antral follicles were aspirated. CEO and CDO oocytes were then matured during 22h in enriched TCM199 medium (Sigma).

extract_protocol: Groups of 25 CDO and CEO oocytes were extracted using Picopure RNA isolation kit (Alphelys, Plaisir, France) according to the manufacturer’s instructions. Total RNA were subsequently amplified using RiboAmp Plus kit (Alphelys, Plaisir, France) following the manufacturer’s instructions and aRNA produced were validated using the Bioanalyzer 2100 RNA 6000 nanochip (Agilent Technologies).

treatment_protocol: CEO were mechanically detached from cumulus and oocytes from both CEO and CDO groups were collected and then kept frozen at -80°C in RNAlater until RNA extraction.

tag: maturation method

value: cumulus enclosed oocyte maturation

tag: cell type

value: in vitro matured cumulus enclosed oocyte

source_name: cow oocyte, mature metaphase-II, CEO replicate4

value: cumulus denuded oocyte maturation

value: in vitro matured cumulus denuded oocyte


title: Breast tumor tissue Sample172

source_name: breast tumor sample 172


title: Cumulus enclosed vs. cumulus denuded oocytes slide13903773_CEO4cy3-CDO4cy5


title: Breast tumor tissue Sample173

source_name: breast tumor sample 173


title: Breast tumor tissue Sample171

source_name: breast tumor sample 171


title: Breast tumor tissue Sample175

source_name: breast tumor sample 175


title: Breast tumor tissue Sample176

source_name: breast tumor sample 176


title: Cumulus enclosed vs. cumulus denuded oocytes slide13903775_CEO3cy3-CDO3cy5

source_name: cow oocyte, mature metaphase-II, CDO replicate3

source_name: cow oocyte, mature metaphase-II, CEO replicate3


title: Breast tumor tissue Sample170

source_name: breast tumor sample 170


title: Cumulus enclosed vs. cumulus denuded oocytes slide13903779_CEO1cy3-CDO1cy5

source_name: cow oocyte, mature metaphase-II, CDO replicate1

source_name: cow oocyte, mature metaphase-II, CEO replicate1


title: Breast tumor tissue Sample174

source_name: breast tumor sample 174


title: Cumulus enclosed vs. cumulus denuded oocytes slide13903776_CEO2cy5-CDO2cy3

source_name: cow oocyte, mature metaphase-II, CDO replicate2

source_name: cow oocyte, mature metaphase-II, CEO replicate2


title: Cumulus enclosed vs. cumulus denuded oocytes slide13903777_CEO2cy3-CDO2cy5


title: Pten/Phlpp double mutant, 4 month timepoint, replicate 1

city: Cold Spring Harbor

first: Muhan

last: Chen

address: 1 Bungtown Rd

institute: Cold Spring Harbor Laboratory

description:
PtenPhlpp_4m_1
LTMC060210_062510_1070.CEL

hyb_protocol: Standard Affymetrix protocol

scan_protocol: Standard Affymetrix protocol

data_processing:
Raw Data were processed with the FARMS algorithm in R/Bioconductor.
probe group file: MoEx-1_0-st-v1.r2.pgf
meta-probeset file: MoEx-1_0-st-v1.r2.dt1.mm9.core.mps
Data filtering details: The microarray data for the paper was used primarily to analyze gene sets that were preferentially altered among differentially expressed genes.  For this analysis, we restricted our set to those probes that matched genes with an Entrez Gene ID, and we required each Entrez ID in our list to be unique.  Therefore, the processed data in this worksheet represents all probes with unique Entrez Gene IDs. The GPL6246 platform has 35,557 ID_REFs, out of which 6614 are control probes.  Of the remaining probes that are designed to match genes, 23,858 correspond to genes with an Entrez gene ID, according to the MoGene annotation files.  Of those, 22,679 represent unique Entrez gene IDs. Of those, many previous Entrez gene IDs have been removed or merged during more recent releases of the Entrez gene info database. Correspondingly, we have also removed the entries for which the Entrez_gene_ID has been removed or merged with another gene.  This left 20,670 entries with a unique and current Entrez gene ID which represents the dataset used for this paper.

organism: Mus musculus

source_name: Pten/Phlpp

label_protocol: Standard Affymetrix protocol

extract_protocol: Total RNA was isolated from tissue (AllPrep) as suggested by the manufacturer.RNA quality was assessed on an Agilent 2100 Bioanalyzer, RNA 6000 Pico Series II Chips (Agilent, Palo Alto, CA, USA). Samples with a RIN score 2.0 or greater were passed, and quantity was determined by Nanodrop ND-1000 (Nanodrop Technologies, Wilmington, DE).

value: 4 month

value: prostate


title: Pten/Phlpp double mutant, 6 month timepoint, replicate 1

description:
PtenPhlpp_6m_1
LTMC060210_062510_440.CEL

value: 6 month


title: Wistar TCDD rep2

source_name: liver, Wistar, TCDD treated, 19 hour exposure


title: Breast tumor tissue Sample169

source_name: breast tumor sample 169

value: II

value: negative


title: Wild type, 6 month timepoint, replicate 3

description:
wt_6m_3
LTMC083110_12_4067.CEL

source_name: WT


title: Wild type, 6 month timepoint, replicate 2

description:
wt_6m_2
LTMC083110_03_426.CEL


title: Breast tumor tissue Sample166

source_name: breast tumor sample 166

value: breast cancer tumor


title: Cumulus enclosed vs. cumulus denuded oocytes slide13904595_CEO3cy5-CDO3cy3


title: Wild type, 6 month timepoint, replicate 1

description:
wt_6m_1
LTMC060210_062510_4054.CEL


title: Cumulus enclosed vs. cumulus denuded oocytes slide13903778_CEO1cy5-CDO1cy3


title: Breast tumor tissue Sample162

source_name: breast tumor sample 162

value: positive


title: Breast tumor tissue Sample167

source_name: breast tumor sample 167

value: I


title: Breast tumor tissue Sample163

source_name: breast tumor sample 163


title: Breast tumor tissue Sample168

source_name: breast tumor sample 168


title: Breast tumor tissue Sample160

source_name: breast tumor sample 160


title: Wild type, 4 month timepoint, replicate 1

description:
wt_4m_1
LTMC060210_062510_1088.CEL


title: Breast tumor tissue Sample164

source_name: breast tumor sample 164


title: Breast tumor tissue Sample161

source_name: breast tumor sample 161


title: Breast tumor tissue Sample159

source_name: breast tumor sample 159


title: Wild type, 4 month timepoint, replicate 2

description:
wt_4m_2
LTMC083110_02_6099.CEL


title: Wild type, 4 month timepoint, replicate 3

description:
wt_4m_3
LTMC083110_11_7080.CEL


title: Breast tumor tissue Sample165

source_name: breast tumor sample 165


title: Breast tumor tissue Sample158

source_name: breast tumor sample 158


title: Rice seedlings roots_juglone Replicate 3

city: Tainan

first: Wen-Chang

last: Chi

state: Taiwan

address: No.1, University Road, Tainan City

department: Life Science

country: Taiwan

institute: National Cheng Kung University

description: Biological replicate 3 of 3. Rice seedling roots with or without 10 μM-treated juglone

hyb_protocol: Correspondingly fragmented labeled cRNA is then pooled and hybridized to Agilent Rice Oligo 4×44K Microarray (Agilent Technologies, USA) at 60°C for 17 h.

scan_protocol: After washing and drying by nitrogen gun blowing, microarrays are scanned with an Agilent microarray scanner (Agilent Technologies, USA) at 535 nm for Cy3 and 625 nm for Cy5. Scanned images are analyzed by Feature extraction software 9.5.3 (Agilent Technologies, USA),

data_processing: An image analysis and normalization software is used to quantify signal and background intensity for each feature, substantially normalized the data by rank-consistency-filtering LOWESS method.

organism: Oryza sativa

source_name: Roots of rice seedlings were exposed to 10mM juglone

label_protocol: 0.5 μg of total RNA was amplified by a Fluorescent Linear Amplification Kit (Agilent Technologies, USA) and labeled with Cy3-CTP or Cy5-CTP (CyDye, PerkinElmer, USA) during the in vitro transcription process rice roots after juglone treatment RNA was labeled by Cy5 and RNA from control RNA was labeled by Cy3. 0.825 μg of Cy-labled cRNA was fragmented to an average size of about 50-100 nucleotides by incubation with fragmentation buffer (Agilent Technologies, USA) at 60oC for 30 minutes.

extract_protocol: Total RNA were extracted using QIAGEN RNeasy kit follwed by DNAse treatment. The RNA samples were further purified and concentrated by RNeasy MinElute Cleanup.

treatment_protocol: Control and rice seedlings were exposed to 10mM juglone

value: 10mM juglone

value: roots of seedlings

tag: cultivar

value: Oryza sativa L. cv. TN-67

value: 6 day

source_name: Rice seedlings roots were exposed to water

tag: tag

value: untreated


title: Rice seedlings roots_juglone Replicate 1

description: Biological replicate 1 of 3. Rice seedling roots with or without 10 μM-treated juglone


title: WS10_Male/Female_replicate #5

city: Boston

first: David

middle: J.

last: Waxman

state: MA

address: 5 Cummington Mall

department: Department of Biology and Bioinformatics Program

institute: Boston University

description: The RNA expression profile for one pool of randomly selected 14 male liver samples and one pool of randomly selected 14 female liver samples is given as a normalized ratio.

hyb_protocol: Hybridization was performed using 0.825 µg of Alexa 555-labeled aRNA and 0.825 µg of Alexa 647-labeled aRNA. Agilent’s SureHyb hybridization chambers were used in a hybridization oven and rotation rack for 17 hr at 65° C at 10 rpm. After hybridization, the slides were washed per Agilent’s SSPE wash protocol.

scan_protocol: Slides were scanned using an Agilent dual laser scanner using the extended dynamic range option, which utilizes two 5 m scans of each slide at settings of PMT 100% and PMT 10% to increase signal dynamic range and avoid feature saturation. TIFF images were analyzed using Agilent’s feature extraction software (version 9.5.3, protocol GE2-v5_91_0806).

data_processing: Linear and LOWESS normalization as determined using Agilent's Feature Extraction software.

label: Alexa 555

source_name: Male human liver RNA

label_protocol: RNA samples were amplified as antisense-RNA (aRNA) while incorporating aminoallyl modified bases using the TargetAMP 1-Round Aminoallyl-aRNA Amplification Kit 101 per the vendor’s protocol (Epicentre, Madison, WI).  Five µg of each aminoallyl-aRNA sample was fluorescent labeled using Alexa 555 or Alexa 647 by incubating with an amine-reactive dye conjugate for 1 hr at room temperature.  Unincorporated dye was removed using an RNeasy column (Qiagen, Valencia, CA).  Dye incorporation efficiency was determined using a Nanodrop spectrophotometer.

extract_protocol: Trizol extraction and Qiagen RNeasy-Mini Kit with on-column DNase treatment

tag: sex

value: male

value: liver

label: Alexa 647

source_name: Female human liver RNA

value: female


title: WS10_Male/Female_replicate #4


title: Breast tumor tissue Sample153

source_name: breast tumor sample 153


title: Breast tumor tissue Sample157

source_name: breast tumor sample 157


title: WS10_Male/Female_replicate #8


title: WS10_Male/Female_replicate #3


title: Line C TCDD rep4

description: Gender: Male,Tissue: liver,Strain: Line-C,Age: 11-15 weeks,Treatment: 100 ug/kg TCDD,Exposure: 19 hours

source_name: liver, Line-C, TCDD treated, 19 hour exposure

value: Male

value: Line-C

value: 100 ug/kg TCDD

value: 19 hours


title: Breast tumor tissue Sample154

source_name: breast tumor sample 154

value: II


title: WS10_Male/Female_replicate #7


title: Breast tumor tissue Sample152

source_name: breast tumor sample 152


title: Breast tumor tissue Sample146

source_name: breast tumor sample 146


title: Breast tumor tissue Sample150

source_name: breast tumor sample 150


title: Breast tumor tissue Sample148

source_name: breast tumor sample 148


title: Breast tumor tissue Sample151

source_name: breast tumor sample 151


title: Line C TCDD rep2


title: Line C TCDD rep1


title: Breast tumor tissue Sample144

source_name: breast tumor sample 144


title: Breast tumor tissue Sample155

source_name: breast tumor sample 155

value: negative


title: Breast tumor tissue Sample149

source_name: breast tumor sample 149

value: breast cancer tumor


title: Breast tumor tissue Sample145

source_name: breast tumor sample 145

value: positive


title: Line C Vehicle rep4

description: Gender: Male,Tissue: liver,Strain: Line-C,Age: 11-15 weeks,Treatment: Corn Oil vehicle,Exposure: 19 hours

source_name: liver, Line-C, Corn Oil treated, 19 hour exposure

value: Corn Oil vehicle


title: Breast tumor tissue Sample147

source_name: breast tumor sample 147


title: Line C Vehicle rep3


title: Rice seedlings roots_juglone Replicate 2

description: Biological replicate 2 of 3. Rice seedling roots with or without 10 μM-treated juglone

source_name: Roots of rice seedlings were exposed to 10mM juglone

value: 10mM juglone

source_name: Rice seedlings roots were exposed to water


title: WS10_Male/Female_replicate #1

source_name: Male human liver RNA

source_name: Female human liver RNA


title: WS9_Male/Female_replicate #8


title: WS9_Male/Female_replicate #6


title: WS9_Male/Female_replicate #7


title: WS10_Male/Female_replicate #2


title: Breast tumor tissue Sample143

source_name: breast tumor sample 143


title: Line C TCDD rep3

source_name: liver, Line-C, TCDD treated, 19 hour exposure


title: Breast tumor tissue Sample142

source_name: breast tumor sample 142


title: Line C Vehicle rep1


title: Breast tumor tissue Sample139

source_name: breast tumor sample 139


title: Breast tumor tissue Sample137

source_name: breast tumor sample 137


title: Breast tumor tissue Sample138

source_name: breast tumor sample 138


title: Line A TCDD rep3

description: Gender: Male,Tissue: liver,Strain: Line-A,Age: 11-15 weeks,Treatment: 100 ug/kg TCDD,Exposure: 19 hours

source_name: liver, Line-A, TCDD treated, 19 hour exposure

value: Line-A


title: Breast tumor tissue Sample141

source_name: breast tumor sample 141


title: Breast tumor tissue Sample140

source_name: breast tumor sample 140


title: Line A TCDD rep2


title: Breast tumor tissue Sample136

source_name: breast tumor sample 136


title: Breast tumor tissue Sample156

source_name: breast tumor sample 156


title: Breast tumor tissue Sample134

source_name: breast tumor sample 134


title: Line A TCDD rep1


title: WS10_Male/Female_replicate #6


title: Breast tumor tissue Sample135

source_name: breast tumor sample 135


title: Line C Vehicle rep2

source_name: liver, Line-C, Corn Oil treated, 19 hour exposure


title: WS9_Male/Female_replicate #2


title: Breast tumor tissue Sample132

source_name: breast tumor sample 132


title: WS9_Male/Female_replicate #3

source_name: Male human liver RNA


title: Line A Vehicle rep3

description: Gender: Male,Tissue: liver,Strain: Line-A,Age: 11-15 weeks,Treatment: Corn Oil vehicle,Exposure: 19 hours

source_name: liver, Line-A, Corn Oil treated, 19 hour exposure


title: Line A Vehicle rep4


title: Breast tumor tissue Sample129

source_name: breast tumor sample 129


title: Breast tumor tissue Sample130

source_name: breast tumor sample 130


title: Breast tumor tissue Sample133

source_name: breast tumor sample 133


title: WS9_Male/Female_replicate #5

source_name: Female human liver RNA


title: Breast tumor tissue Sample127

source_name: breast tumor sample 127


title: WS9_Male/Female_replicate #1


title: Breast tumor tissue Sample131

source_name: breast tumor sample 131

value: I


title: Line A Vehicle rep2


title: Breast tumor tissue Sample126

source_name: breast tumor sample 126


title: Breast tumor tissue Sample125

source_name: breast tumor sample 125


title: Line A Vehicle rep1


title: Breast tumor tissue Sample128

source_name: breast tumor sample 128


title: Han/Wistar Vehicle rep4

description: Gender: Male,Tissue: liver,Strain: Han/Wistar,Age: 11-15 weeks,Treatment: Corn Oil vehicle,Exposure: 19 hours

source_name: liver, Han/Wistar, Corn Oil treated, 19 hour exposure

value: Han/Wistar


title: Breast tumor tissue Sample124

source_name: breast tumor sample 124


title: Han/Wistar TCDD rep3

description: Gender: Male,Tissue: liver,Strain: Han/Wistar,Age: 11-15 weeks,Treatment: 100 ug/kg TCDD,Exposure: 19 hours

source_name: liver, Han/Wistar, TCDD treated, 19 hour exposure


title: Breast tumor tissue Sample122

source_name: breast tumor sample 122


title: Breast tumor tissue Sample117

source_name: breast tumor sample 117


title: Breast tumor tissue Sample119

source_name: breast tumor sample 119


title: Breast tumor tissue Sample121

source_name: breast tumor sample 121


title: Han/Wistar TCDD rep2


title: Breast tumor tissue Sample118

source_name: breast tumor sample 118


title: Long Evans TCDD rep4

description: Gender: Male,Tissue: liver,Strain: Long-Evans,Age: 11-15 weeks,Treatment: 100 ug/kg TCDD,Exposure: 19 hours

source_name: liver, Long-Evans, TCDD treated, 19 hour exposure

value: Long-Evans


title: Han/Wistar TCDD rep4


title: Breast tumor tissue Sample123

source_name: breast tumor sample 123


title: Breast tumor tissue Sample120

source_name: breast tumor sample 120


title: Long Evans TCDD rep3


title: Long Evans TCDD rep2


title: Breast tumor tissue Sample115

source_name: breast tumor sample 115


title: Breast tumor tissue Sample116

source_name: breast tumor sample 116


title: Breast tumor tissue Sample113

source_name: breast tumor sample 113


title: Breast tumor tissue Sample114

source_name: breast tumor sample 114


title: Breast tumor tissue Sample110

source_name: breast tumor sample 110


title: Breast tumor tissue Sample111

source_name: breast tumor sample 111


title: Line A TCDD rep4

source_name: liver, Line-A, TCDD treated, 19 hour exposure


title: Han/Wistar Vehicle rep2

source_name: liver, Han/Wistar, Corn Oil treated, 19 hour exposure


title: Breast tumor tissue Sample109

source_name: breast tumor sample 109


title: Breast tumor tissue Sample108

source_name: breast tumor sample 108


title: Breast tumor tissue Sample112

source_name: breast tumor sample 112


title: WS9_Male/Female_replicate #4

source_name: Male human liver RNA

value: male

source_name: Female human liver RNA


title: Long Evans Vehicle rep4

description: Gender: Male,Tissue: liver,Strain: Long-Evans,Age: 11-15 weeks,Treatment: Corn Oil vehicle,Exposure: 19 hours

source_name: liver, Long-Evans, Corn Oil treated, 19 hour exposure

value: liver


title: Han/Wistar Vehicle rep3


title: Breast tumor tissue Sample103

source_name: breast tumor sample 103


title: Breast tumor tissue Sample102

source_name: breast tumor sample 102


title: Long Evans Vehicle rep3


title: 40361_EAC

city: Herston

first: Derek

middle: John

last: Nancarrow

state: Queensland

address: 300 Herston Road

department: Genetics & Population Health

country: Australia

institute: Queensland Institute of Medical Research

description: esophageal adenocarcinoma biopsy taken prior to the patient undergoing treatment

data_processing: GenomeStudio software, version 2.0 (Illumina) was used to extract raw signal intensity data which was imported into GeneSpring GX version 7.3.1 (Agilent Technologies) where it was transformed (logarithm to the base 2), corrected for background (< 0.01 adjusted to 0.01) and normalized for intensity (Lowess residual to the 50th percentile) . We have chosen to include only those probes predicted to bind uniquely to the transcriptome and have a perfect match to the consensus genome (n=25049), as defined by Barbosa-Morais and co-workers [Nucleic Acids Res 38: e17, 2010.] and labelled within the appropriate supplementary file as perfect.

label: Biotin

source_name: single whole esophageal biopsy, stored in RNAlater

label_protocol: Biotin labeled cRNA. Refer to the Illumina Gene Expression System Manual, Revision D

extract_protocol: As per QIAGEN tissue lyser protocol using ALLPREP Kit

treatment_protocol: Fresh tissue was placed directly into RNAlater solution, stored at 4°C overnight, then -20°C. Long-term storage was then at -80°C after access RNAlater was removed.

tag: tissue type

value: esophageal adenocarcinoma tumor

tag: individual id

tag: histology review type (see paper for details)

value: slide

tag: subject gender

tag: subject age (years)

tag: tumour stage

value: III

tag: matching cn sample id

tag: sample barcode


title: Breast tumor tissue Sample106

source_name: breast tumor sample 106

tag: Stage

tag: age at diagnosis

tag: er status

tag: pr status

tag: tissue


title: Breast tumor tissue Sample104

source_name: breast tumor sample 104


title: Breast tumor tissue Sample105

source_name: breast tumor sample 105


title: 40340_EAC

hyb_protocol: Refer to the Illumina Gene Expression System Manual, Revision D

value: IV


title: Breast tumor tissue Sample107

source_name: breast tumor sample 107


title: 42199_EAC

scan_protocol: Refer to the Illumina Gene Expression System Manual

value: path info

value: female

value: IIA


title: Long Evans Vehicle rep2

tag: gender

value: Male

tag: strain

tag: age

tag: treatment

tag: time

value: 19 hours


title: 53145_EAC

tag: tissue type

tag: individual id


title: Breast tumor tissue Sample101

source_name: breast tumor sample 101

value: II

value: positive

value: negative

value: breast cancer tumor


title: Breast tumor tissue Sample96

source_name: breast tumor sample 96


title: Breast tumor tissue Sample95

source_name: breast tumor sample 95


title: Breast tumor tissue Sample98

source_name: breast tumor sample 98

value: I


title: Breast tumor tissue Sample99

source_name: breast tumor sample 99


title: Breast tumor tissue Sample100

source_name: breast tumor sample 100


title: Han/Wistar Vehicle rep1

source_name: liver, Han/Wistar, Corn Oil treated, 19 hour exposure

value: Han/Wistar

value: Corn Oil vehicle


title: Long Evans Vehicle rep1

value: liver

value: Long-Evans


title: 40353_EAC

value: esophageal adenocarcinoma tumor

tag: histology review type (see paper for details)

value: slide

tag: subject gender

value: male


title: Breast tumor tissue Sample97

source_name: breast tumor sample 97


title: Han/Wistar TCDD rep1

source_name: liver, Han/Wistar, TCDD treated, 19 hour exposure

value: 100 ug/kg TCDD


title: Breast tumor tissue Sample93

source_name: breast tumor sample 93


title: Breast tumor tissue Sample94

source_name: breast tumor sample 94


title: Breast tumor tissue Sample92

source_name: breast tumor sample 92


title: Long Evans TCDD rep1

source_name: liver, Long-Evans, TCDD treated, 19 hour exposure


title: 54043_EAC

source_name: single whole esophageal biopsy, stored in RNAlater

value: path info

tag: subject age (years)

tag: tumour stage


title: Breast tumor tissue Sample91

source_name: breast tumor sample 91


title: Breast tumor tissue Sample90

source_name: breast tumor sample 90


title: 40359_EAC

tag: matching cn sample id

tag: sample barcode


title: 40356_EAC

value: III


title: Breast tumor tissue Sample89

source_name: breast tumor sample 89

tag: Stage

tag: age at diagnosis


title: 40360_EAC

value: IIA


title: Breast tumor tissue Sample88

source_name: breast tumor sample 88

tag: er status

tag: pr status


title: Pre HS, 0.5uM ecdy rep3

city: Mississauga

first: Zak

last: Razak

address: 3359 Mississauga Rd

institute: Canadian Drosophila Microarray Centre

hyb_protocol: See http://www.flyarrays.com/ under protocols.Modifications by Scott:-use 5uL 50mM EDTA-precipitate probe for at least 1 hour-use 20uL DIG EasyHyb per humidifying well-final hyb volume is 80uL

scan_protocol: Images of the hybridized microarrays were obtained using a ScanArray 4000 scanner (Perkin-Elmer) and were quantified using QuantArray 3.0 software (Perkin-Elmer)

data_processing: Data were normalized using lowest sub-grid normalization (Yang, 2002) and Genetraffic Duo (Stratagene/Agilent) analysis software.

organism: Drosophila melanogaster

source_name: Pre HS, 0.5uM ecdysone

label_protocol: CDMC Direct Labeling Protocol

growth_protocol: Cultures are grown to a minimum density of 5x10^6 cells per mL prior to extraction.

extract_protocol: Trizol is used at a ratio of 1 mL per 10^7 cells. Extraction procedure is as described by the manufacturer with centrifugation in a Sorvall SS-34 rotor. Final pellets are air dried and then resuspended in Sigma 18 meg-ohm water to obtain a final RNA concentation of no less than 4ug per uL.

tag: cell line

tag: rna sample

value: The sample had an [RNA] of 5.87 ug per uL and an OD ratio of 1.91.Details:3 mL Trizol600 uL chloroform2.3 mL isopropanol1.4 mL 75% EtOH-brought up in 40 uL Sigma 18 meg-ohm water

source_name: EtOH control pool: June 15, 2004

value: The sample had an [RNA] of 4.01 ug per uL and an OD ratio of 1.96.Details:3 mL Trizol600 uL chloroform2.3 mL isopropanol1.4 mL 75% EtOH-brought up in 40 uL Sigma 18 meg-ohm water


title: 40362_EAC

value: IVA


title: Breast tumor tissue Sample82

source_name: breast tumor sample 82

value: II

value: positive

tag: tissue


title: Pre HS, 0.5uM ecdy rep2

value: The sample had an [RNA] of 3.09 ug per uL and an OD ratio of 1.98.Details:2.5 mL Trizol500 uL chloroform2 mL isopropanol1.2 mL 75% EtOH-brought up in 30 uL Sigma 18 meg-ohm water

source_name: EtOH control pool: May 28, 2004

value: The sample had an [RNA] of 3.31 ug per uL and an OD ratio of 2.03.Details:2.5 mL Trizol500 uL chloroform2 mL isopropanol1.2 mL 75% EtOH-brought up in 30 uL Sigma 18 meg-ohm water


title: Pre HS, 0.5uM ecdy rep1

value: The sample had an [RNA] of 5.03 ug per uL and an OD ratio of 1.94.Details:4 mL Trizol800 uL chloroform3 mL isopropanol1.8 mL 75% EtOH-brought up in 45 uL Sigma 18 meg-ohm water

source_name: EtOH control pool: June 9, 2004

value: The sample had an [RNA] of 4.93 ug per uL and an OD ratio of 1.95.Details:4 mL Trizol800 uL chloroform3 mL isopropanol1.8 mL 75% EtOH-brought up in 45 uL Sigma 18 meg-ohm water


title: Breast tumor tissue Sample83

source_name: breast tumor sample 83

value: breast cancer tumor


title: Breast tumor tissue Sample85

source_name: breast tumor sample 85

value: I


title: Breast tumor tissue Sample87

source_name: breast tumor sample 87

value: negative


title: Breast tumor tissue Sample81

source_name: breast tumor sample 81


title: 40338_EAC

value: esophageal adenocarcinoma tumor

value: slide

value: male


title: 40364_EAC


title: Breast tumor tissue Sample86

source_name: breast tumor sample 86


title: 40336_EAC

value: III


title: 0.5uM ecdy 2hrs rep2

source_name: 0.5uM ecdysone, 2hr RT

value: embryo-derived

tag: developmental stage

value: late embryonic

value: The sample had an [RNA] of 3.36 ug per uL and an OD ratio of 2.00.Details:2.5 mL Trizol500 uL chloroform2 mL isopropanol1.2 mL 75% EtOH-brought up in 30 uL Sigma 18 meg-ohm water


title: Breast tumor tissue Sample84

source_name: breast tumor sample 84


title: Breast tumor tissue Sample79

source_name: breast tumor sample 79


title: Breast tumor tissue Sample78

source_name: breast tumor sample 78


title: 0.5uM ecdy 2hrs rep1

value: The sample had an [RNA] of 5.33 ug per uL and an OD ratio of 1.93.Details:4 mL Trizol800 uL chloroform3 mL isopropanol1.8 mL 75% EtOH-brought up in 45 uL Sigma 18 meg-ohm water


title: Breast tumor tissue Sample80

source_name: breast tumor sample 80

value: II


title: 0.5uM ecdy 2hrs rep3

value: The sample had an [RNA] of 3.89 ug per uL and an OD ratio of 1.98.Details:3 mL Trizol600 uL chloroform2.3 mL isopropanol1.4 mL 75% EtOH-brought up in 40 uL Sigma 18 meg-ohm water

value: The sample had an [RNA] of 4.01 ug per uL and an OD ratio of 1.96.Details:3 mL Trizol600 uL chloroform2.3 mL isopropanol1.4 mL 75% EtOH-brought up in 40 uL Sigma 18 meg-ohm water


title: 40320_EAC

source_name: single whole esophageal biopsy, stored in RNAlater

value: IIB


title: 0.5uM ecdy 2hrs HS rep3

source_name: 0.5uM ecdysone, 2hr Heat Shock

value: The sample had an [RNA] of 4.72 ug per uL and an OD ratio of 1.96.Details:3 mL Trizol600 uL chloroform2.3 mL isopropanol1.4 mL 75% EtOH-brought up in 40 uL Sigma 18 meg-ohm water


title: 40323_EAC

value: IVA


title: Breast tumor tissue Sample76

source_name: breast tumor sample 76

value: breast cancer tumor


title: Breast tumor tissue Sample77

source_name: breast tumor sample 77


title: Breast tumor tissue Sample73

source_name: breast tumor sample 73

value: positive


title: Breast tumor tissue Sample75

source_name: breast tumor sample 75

value: negative


title: 40325_EAC

value: esophageal adenocarcinoma tumor

value: IIA


title: 0.5uM ecdy 2hrs HS rep2

value: The sample had an [RNA] of 2.98 ug per uL and an OD ratio of 1.97.Details:2.5 mL Trizol500 uL chloroform2 mL isopropanol1.2 mL 75% EtOH-brought up in 30 uL Sigma 18 meg-ohm water

source_name: EtOH control pool: May 28, 2004

value: The sample had an [RNA] of 3.31 ug per uL and an OD ratio of 2.03.Details:2.5 mL Trizol500 uL chloroform2 mL isopropanol1.2 mL 75% EtOH-brought up in 30 uL Sigma 18 meg-ohm water


title: Breast tumor tissue Sample71

source_name: breast tumor sample 71

value: I


title: Breast tumor tissue Sample72

source_name: breast tumor sample 72


title: Breast tumor tissue Sample74

source_name: breast tumor sample 74


title: 40358_EAC

value: slide

value: male


title: 0.5uM ecdy 2hrs HS rep1

value: The sample had an [RNA] of 4.98 ug per uL and an OD ratio of 1.93.Details:4 mL Trizol800 uL chloroform3 mL isopropanol1.8 mL 75% EtOH-brought up in 45 uL Sigma 18 meg-ohm water

source_name: EtOH control pool: June 9, 2004

value: The sample had an [RNA] of 4.93 ug per uL and an OD ratio of 1.95.Details:4 mL Trizol800 uL chloroform3 mL isopropanol1.8 mL 75% EtOH-brought up in 45 uL Sigma 18 meg-ohm water


title: Breast tumor tissue Sample70

source_name: breast tumor sample 70


title: 40341_EAC

value: III


title: Breast tumor tissue Sample69

source_name: breast tumor sample 69

value: II