title: Leaf L6 of miR156 over-expressed, biological repeat 3

status: Public on Oct 26 2010

city: Wuhan

first: Kabin

last: Xie

state: Hubei

address: Shizi Shan Street

department: National Key Laboratory of Crop Genetic Improvement

country: China

institute: Huazhong Agriculture University

hyb_protocol: standard Affymetrix procedures

scan_protocol: GeneChips were scanned using the Affymetrix® GeneChip® Scanner 3000.

data_processing: Affymetrix ® GeneChip® Operating SoftwareVersion1.0

organism: Oryza sativa Japonica Group

source_name: Rice overexpressed miR156, biological repeat 3

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: Sterilized seeds of transgenic plants and wild type were germinated in MS medium. Positive transgenic plants were selected by adding 50 mM hygromycin for miR156-overexpressed plants. Ten-day-old uniform seedlings were transferred to hydroponics culture medium and forty five-day-old plants were collected for microarray analysis. The leaves in the main tiller were numbered according to its emerging order, with L1 indicating the first developed leaf. All samples were prechecked by small RNA gel blot for the expression level of miR156 to confirm overexpression. The old (L3) and young leaf (L6) were used for microarray hybridization.

extract_protocol: TRIzol(Invitrogen, Carlsbad, CA, USA) extraction of total RNA was performed according to the manufacturer's instructions.

tag: mir156 expression

value: over-expressing

tag: line


title: Leaf L3 of wild type, biological repeat 1

type: RNA

label: Biotin

molecule: total RNA

source_name: Wild type, biological repeat 1

value: wild type WT1


title: Leaf L3 of wild type, biological repeat 2

source_name: Wild type, biological repeat 2

value: wild type WT2


title: Leaf L6 of miR156 over-expressed, biological repeat 1

source_name: Rice overexpressed miR156, biological repeat 1


title: Leaf L6 of wild type, biological repeat 3

source_name: Wild type, biological repeat 3

value: wild type WT3


title: Leaf L3 of wild type, biological repeat 3


title: Leaf L6 of wild type, biological repeat 1


title: Arabidopsis_sdg2_10d_biorep3

status: Public on Oct 11 2010

city: Athens

first: Xiaoyu

last: Zhang

state: GA

address: 4520 Miller Plant Sci. bldg, Dept. Plant Biology, UGA

department: Plant Biology

country: USA

institute: University of Georgia

description:
sdg2_3
Gene expression data from sdg2 mutant seedlings.

hyb_protocol: Hybridization, washing and staining were performed following the Affymetrix Eukaryotic Gene Expression Sample Processing protocol.

scan_protocol: Scanning was performed using the Affymetrix GeneChip Scanner 3000 7G.

data_processing: CEL files were processed using the GCRMA package in Bioconductor.

label: biotin

organism: Arabidopsis thaliana

source_name: sdg2 mutant seedlings

label_protocol: RNA was labeled using the 3' IVT Express Kit (Affymetrix) following the manufacturer's instructions exactly.

growth_protocol: Arabidopsis thaliana seedlings were grown on 1/2 MS plates under 24hr light at 22C for 10 days.

extract_protocol: Total RNA was extracted using Trizol (Invitrogen) and cleaned up using the RNeasy kit (Qiagen)

tag: accession

value: Columbia (Col-0)

tag: tissue

value: seedling

tag: age

value: 10 days

tag: genotype

value: sdg2 mutation


title: Leaf L3 of miR156 over-expressed, biological repeat 2

source_name: Rice overexpressed miR156, biological repeat 2


title: Leaf L6 of wild type, biological repeat 2


title: Arabidopsis_sdg2_10d_biorep1

description:
sdg2_1
Gene expression data from sdg2 mutant seedlings.


title: Arabidopsis_sdg2_10d_biorep2

description:
sdg2_2
Gene expression data from sdg2 mutant seedlings.


title: Leaf L6 of miR156 over-expressed, biological repeat 2


title: Arabidopsis_wt_10d_biorep3

description:
Col_3
Gene expression data from wild type seedlings.

source_name: Wild type control seedlings

value: wild type


title: Control LLC lung

status: Public on Sep 06 2010

city: Tokyo

first: Satoshi

last: Ishii

address: 7-3-1 Hongo, Bunkyo

department: Department of Biochem. & Mol. Biol.

country: Japan

institute: The University of Tokyo

description: None.

hyb_protocol: 10 µg of fragmented cRNA were hybridized (45°C, 16 hours). Hybridization was controled by adding cRNA cocktail (BioC, BioD, Cre) mixed as described in previous versions of the Expression Analysis Technical Manual.  Washing and staining was performed in a Fluidics Station 450 (Affymetrix) using the protocol EukGE-WS2v5.

scan_protocol: Scanning was performed in an Affymetrix GeneChip® Scanner 3000. Chip analysis was performed using the Affymetrix GeneChip® Operating Software v1.4.

data_processing: The scan values were normalized to make its average equal to 100.

organism: Mus musculus

source_name: Lung of C57BL/6 mice injected with Lewis lung carcinoma (LLC) cells

label_protocol: 2µg of total RNA was reverse transcribed using the SuperScript II system for cDNA synthesis (Invitrogen) according to the protocol recommended by Affymetrix. The oligonucleotide used for priming was 5’-ggccagtgaattgtaatacgactcactatagggaggcgg-(t)24-3’ (Affymetrix).  Double-stranded cDNA was cleaned up by using the GeneChip® Sample Cleanup Module (Affymetrix). In vitro transcription was performed on all of cDNA using the GeneChip® IVT Labeling Kit (Affymetrix). The cRNA was cleaned up by using RNeasy Mini spin column (QIAGEN). The cRNA was fragmented by heating in 40 mM Tris-acetate pH 8.1, 100 mM KOAc, 30 mM MgOAc.

extract_protocol: Total RNA was extracted from murine whole lungs and purified using an RNeasy Mini Kit (Qiagen). The total lung RNA samples from ten mice were pooled.

value: lung

tag: strain

tag: agent

value: vector-transfected Lewis lung carcinoma cells


title: RASSF9-/- mouse keratinocytes (sample 1 of 2)

status: Public on Sep 17 2010

city: Kwei-Shan

first: Chiou-Mei

last: Lee

state: Taoyuan

address: 5, Fusing St

department: Department of Medical Research and Development

country: Taiwan

institute: Chang Gung Memorial Hospital

description:
RASSF9-/-_1_of_2
S1101-036-KO 113005.CEL

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Expression 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

source_name: Primary keratinocyte from neonatal RASSF9-/- mouse

growth_protocol: Epidermal keratinocytes from skin tissue of neonatal mice were isolated and cultured in defined keratinocyte-Serum Free Medium (K-SFM) with growth supplement (Invitrogen) for 48 hr at 37C and 5% CO2 prior to extraction.

extract_protocol: Total RNA was extracted by TRIzol in accordance with manufacturer's instructions.

value: ICR

value: skin

tag: cell type

value: primary keratinocyte

tag: genotype/variation

tag: developmental stage

value: neonatal


title: WT mouse keratinocytes

description:
WT
S1101-035-WT 113005.CEL

source_name: Primary keratinocyte from neonatal WT mouse

growth_protocol: Epidermal keratinocytes from skin tissue of neonatal mice were isolated and cultured in defined keratinocyte-Serum Free Medium (K-SFM) with growth supplement (Invitrogen) for 24 hr at 37C and 5% CO2 prior to extraction.


title: RASSF9-/- mouse keratinocytes (sample 2 of 2)

description:
RASSF9-/-_2_of_2
S1101-037-KO 121305.CEL


title: Arabidopsis_wt_10d_biorep2

description:
Col_2
Gene expression data from wild type seedlings.


title: Arabidopsis_wt_10d_biorep1

description:
Col_1
Gene expression data from wild type seedlings.


title: TDAG8 LLC lung

description: None.

value: TDAG8-overexpressing Lewis lung carcinoma cells


title: Leaf L3 of miR156 over-expressed, biological repeat 3


title: Leaf L3 of miR156 over-expressed, biological repeat 1


title: Nitrosomonas europaea_Biofilm_phenol_3

status: Public on Jul 20 2010

city: Corvallis

first: Ellen

last: Lauchnor

state: OR

address: 102 Gleeson Hall

department: School of Chemical, Biological and Environmental Engineering

institute: Oregon State University

description: Third of three samples of N. europaea biofilms exposed to 60 uM phenol, for gene expression comparison between biofilm and exponential-phase cells, and expression analysis of phenol- and toluene-treated biofilms.

hyb_protocol: Hybridization was performed on a 4-bay NimbleGen Hybridization Station (Roche NimbleGen, Madison, WI) at 42ºC for 16 h.

scan_protocol: Scanning was performed at the Oregon State University Center for Genome Research and Biocomputing at a wavelength of 532 nm with an Axon GenePix 4200A scanner according to manufacturer specifications (Molecular Devices, Sunnyvale, CA).

data_processing: Roche NimbleScan version 2.5 software was used to align array scans and extract probe intensities, according to NimbleGen protocol (see www.nimblegen.com). ArrayStar version 3 software was used to generate RMA-normalized gene expression values and for statistical analysis.

organism: Nitrosomonas europaea

source_name: Nitrosomonas europaea biofilm cells, phenol

label_protocol: The cDNA was labeled with Cy3-random priming using the NimbleGen One-Color DNA Labeling Kit (Roche NimbleGen, Madison, WI).  Labeling was performed according to Nimblegen standard protocol, see www.nimblegen.com

growth_protocol: Biofilms of N. europaea were grown in a Drip Flow Biofilm Reactor for 4-6 weeks prior to treatment.

extract_protocol: Total cellular RNA was extracted using Trizol reagent (Ambion, Inc., Austin, TX) and phenol-chloroform extraction.  RNA was further purified using the RNeasy Mini kit (Qiagen Inc., Valencia, CA, USA).  RNA quality was determined with an Agilent 2100 bioanalyzer.

treatment_protocol: 60 uM phenol treatment for 2h prior to harvesting biofilm cells.

tag: phenotype

value: biofilm

tag: treatment

value: 60uM phenol


title: Nitrosomonas europaea_Biofilm_phenol_1

description: First of three samples of N. europaea biofilms exposed to 60 uM phenol, for gene expression comparison between biofilm and exponential-phase cells, and expression analysis of phenol- and toluene-treated biofilms.


title: Nitrosomonas europaea_Biofilm_toluene_3

description: Third of three samples of N. europaea biofilms exposed to 100 uM toluene, for gene expression comparison between biofilm and exponential-phase cells, and expression analysis of phenol- and toluene-treated biofilms.

source_name: Nitrosomonas europaea biofilm cells, toluene

treatment_protocol: 100 uM aqueous toluene treatment for 2h prior to harvesting biofilm cells.

value: 100 uM toluene


title: Nitrosomonas europaea_Biofilm_toluene_2

description: Second of three samples of N. europaea biofilms exposed to 100 uM toluene, for gene expression comparison between biofilm and exponential-phase cells, and expression analysis of phenol- and toluene-treated biofilms.


title: Nitrosomonas europaea_Biofilm_phenol_2

description: Second of three samples of N. europaea biofilms exposed to 60 uM phenol, for gene expression comparison between biofilm and exponential-phase cells, and expression analysis of phenol- and toluene-treated biofilms.


title: Nitrosomonas europaea_Biofilm_toluene_1

description: First of three samples of N. europaea biofilms exposed to 100 uM toluene, for gene expression comparison between biofilm and exponential-phase cells, and expression analysis of phenol- and toluene-treated biofilms.


title: Nitrosomonas europaea_BiofilmControl_3

description: Third of three samples of N. europaea biofilms, for gene expression comparison between biofilm and exponential-phase cells, and expression analysis of phenol- and toluene-treated biofilms.

source_name: Nitrosomonas europaea biofilm cells, untreated

treatment_protocol: Control biofilms, no treatment.


title: Nitrosomonas europaea_BiofilmControl_2

description: Second of three samples of N. europaea biofilms, for gene expression comparison between biofilm and exponential-phase cells, and expression analysis of phenol- and toluene-treated biofilms.


title: dKO spinalcord 2

status: Public on Aug 04 2010

city: New York

first: Chaolin

state: NY

address: 1230 York Ave

department: Molecular Neuro-Oncology

institute: Rockefeller University

description: mouse Nova1/2 double knockout spinalcord

hyb_protocol: Affymetrix WT Sense Target Labeling Assay

scan_protocol: The scanning and image acquisition was done using Affymetrix GeneChip Operating Software (GCOS) v1.4. The scanner model is GeneChip Scanner 3000 7G.

data_processing:
Affymetrix Power Tools; PLIER/IterPLIER model; brain and spinalcord data were analyzed separately. In our analysis, we used the "extended probesets" for exon analysis (MoEx-1_0-st-v1.r2.dt1.mm8.extended.ps. There are 625,534 probesets defined in this file.
probe group file: MoEx-1_0-st-v1.r2.pgf
probeset file: MoEx-1_0-st-v1.r2.dt1.mm8.extended.ps

extract_protocol: Trizol Extraction

value: spinalcord

value: Nova1/2 double knockout


title: Nitrosomonas europaea_BiofilmControl_1

description: First of three samples of N. europaea biofilms, for gene expression comparison between biofilm and exponential-phase cells, and expression analysis of phenol- and toluene-treated biofilms.


title: WT brain 2

description: mouse wild type brain

source_name: mouse wild type brain

label_protocol: Affymetrix WT Sense Target Labeling Assay

value: whole brain


title: Nitrosomonas europaea_Controlcells_3

description: Third of three samples of exponential-phase cells that are used as gene expression comparison to biofilms of N. europaea.

source_name: Nitrosomonas europaea exponential-phase planktonic cells, untreated

growth_protocol: N. europaea cells were grown in batch reactors for 3 days and harvested during log-phase.

value: planktonic

tag: growth

value: exponential-phase


title: Nitrosomonas europaea_Controlcells_1

description: First of three samples of exponential-phase cells that are used as gene expression comparison to biofilms of N. europaea.


title: WT spinalcord 1

description: mouse wild type spinalcord

source_name: mouse wild type spinalcord


title: dKO brain 2

description: mouse Nova1/2 double knockout brain

source_name: mouse Nova1/2 double knockout brain


title: Nitrosomonas europaea_Controlcells_2

description: Second of three samples of exponential-phase cells that are used as gene expression comparison to biofilms of N. europaea.


title: WT spinalcord 3

description: mouse wild type spinalcord


title: dKO brain 4

description: mouse Nova1/2 double knockout brain


title: WT spinalcord 4

description: mouse wild type spinalcord


title: dKO spinalcord 1

source_name: mouse Nova1/2 double knockout spinalcord


title: dKO spinalcord 4


title: dKO spinalcord 3


title: WT brain 4

description: mouse wild type brain


title: WT spinalcord 2

description: mouse wild type spinalcord


title: CD31 cells, G-CSF x 5 days, replicate 4

status: Public on Jul 14 2010

city: Seattle

first: Adam

last: Greenbaum

state: WA

address: 1100 Fairview Ave N D4-100

department: Oncology

institute: Fred Hutchinson Cancer Research Center

hyb_protocol: Following fragmentation, 12.5 ug of cRNA were hybridized for 16 hr at 45C on the GeneChip Mouse 430 2.0  Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Affymetrix GeneArray Scanner 7G06.

data_processing: The data were analyzed with Affymetrix Expression Console version 1.1 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

source_name: Wild type mice, endothelial, G-CSF

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100 ng total RNA (Expression Analysis Technical Manual, 2008, Affymetrix).

growth_protocol: pOBcol2.3-GFP mice (6-8 weeks) were used for these studies.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Mice were treated subcutaneously with 250 ug/kg of G-CSF for 5 days or vehicle alone. Bone marrow stromal cells were extracted via serial collagenase digestion. Osteoblast (CD45- ter119- CD31- GFP+) and endothelial cells (CD45- ter119- GFP- CD31+) were FACS purified into Trizol LS (Gibco BRL).

tag: background strain

value: 6-8 weeks

value: bone marrow

value: endothelial

value: granulocyte colony-stimulating factor (G-CSF)


title: WT brain 3

description: mouse wild type brain

value: wild type


title: PEO1-Mock treated

status: Public on Nov 17 2010

city: Durham

first: Susan

middle: K.

last: Murphy

state: NC

address: B226 LSRC B Wing, Research Drive, Box 91012

department: Obstetrics and Gynecology

institute: Duke University Medical Center

description:
9865_PEO1
Experiment 1.

hyb_protocol: Standard Affymetrix protocol.

scan_protocol: Standard Affymetrix protocol.

data_processing: RMA normalization with RMAExpress software (http://rmaexpress.bmbolstad.com) using background adjustment, quantile normalization and median polish summarization.

organism: Homo sapiens

source_name: ovarian cancer cells, mock treated

label_protocol: Affymetrix one cycle IVT.

growth_protocol: All cells, including sorted CD133+ and CD133- A2780 and PEO1 cells, were grown in RPMI1640 media with 10% FBS in a humidifed incubator maintained at 37 degrees Celsius with 5% CO2 until ~70% confluent.

extract_protocol: RNA Stat-60.

treatment_protocol: At ~70% confluence, cells were either mock treated with tissue culture media (Mock) or with 5 µM 5-aza-2'-deoxxycytidine (Decitabine) for 72 hours.

tag: cell line

value: ovarian cancer cells

tag: gender

value: female

value: mock


title: CD31 cells, G-CSF x 5 days, replicate 3


title: WT brain 1

description: mouse wild type brain


title: dKO brain 1

description: mouse Nova1/2 double knockout brain


title: CD31 cells, G-CSF x 5 days, replicate 2


title: CD31 cells, untreated, replicate 1

source_name: Wild type mice, endothelial, untreated

treatment_protocol: Mice were treated subcutaneously with 250 ug/kg of G-CSF for 7 days or vehicle alone. Bone marrow stromal cells were extracted via serial collagenase digestion. Osteoblast (CD45- ter119- CD31- GFP+) and endothelial cells (CD45- ter119- GFP- CD31+) were FACS purified into Trizol LS (Gibco BRL).

value: untreated


title: CD31 cells, untreated, replicate 4


title: CD31 cells, G-CSF x 5 days, replicate 1


title: CD31 cells, untreated, replicate 3


title: pOBcol2.3-GFP cells, G-CSF x 5 days, replicate 3

source_name: Wild type mice, osteoblasts, G-CSF

value: osteoblasts


title: pOBcol2.3-GFP cells, G-CSF x 5 days, replicate 2


title: pOBcol2.3-GFP cells, untreated, replicate 3

source_name: Wild type mice, osteoblasts, untreated


title: EZH2-2

status: Public on Oct 09 2010

type: genomic

city: Houston

first: Mien-chie

last: Hung

state: Texas

address: 1515 Holcomb Blvd

department: Molecular and Cellular Oncology

institute: M.D. Anderson Cancer Center

hyb_protocol: DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.

scan_protocol: The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.

data_processing: CEL files files were processed by Partek software

molecule: genomic DNA

source_name: EZH2 expressing cells

label_protocol: As per manufacturer (Affymetrix)

growth_protocol: primary tumor cell culture

extract_protocol: Genomic DNA was extracted from sorted breast tumor initiating cells. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer.

treatment_protocol: Retroviral infection

value: primary tumor cell culture

tag: treatment group

tag: tissue type

value: breast tumor


title: pOBcol2.3-GFP cells, G-CSF x 5 days, replicate 1


title: pOBcol2.3-GFP cells, untreated, replicate 1


title: pOBcol2.3-GFP cells, untreated, replicate 2


title: CD31 cells, untreated, replicate 2


title: EZH2


title: Vector-3

source_name: Vector control expressing cells

value: Vector


title: Vector


title: EZH2-3


title: shet087 | complex karyotype

status: Public on Jul 11 2010

city: Berlin

first: Lars

last: Bullinger

address: Augustenburger Platz 1

department: Hematology, Oncology and Tumorimmunology

country: Germany

institute: Charité

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47456.gif

hyb_protocol: not provided

scan_protocol: GenePix 4000B

data_processing: VALUE is Log (base 2) of the ratio of the median of Channel 2 (usually 635 nm) to Channel 1 (usually 532 nm)

source_name: Stratagene common reference

extract_protocol: not provided

tag: reference

value: Stratagene common reference

label_protocol: RNA from AML specimens was labeled with Cy5-dUTP using an anchored poly(dT) primer during first strand reverse transcription (Superscript II).  A universal reference RNA (pooled from 11 cell lines) was labeled identically but with Cy3-dUTP

extract_protocol: Normal karyotype acute myeloid leukemia (NK-AML) specimens comprise Ficoll gradient purified mononuclear cells (>80% blasts) from diagnostic peripheral blood or bone marrow.  Total RNA was isolated from stored, frozen mononuclear AML-cell pellets using Trizol reagent, and RNA quality assessed by gel electrophoresis.; Protocol Type = Extract preparation

tag: source

tag: overall survival time

value: 165 days

tag: overall survival status

value: dead

value: complex karyotype

value: male

tag: runx1 mutation

tag: tet2 mutation status

value: wt


title: dKO brain 3

description: mouse Nova1/2 double knockout brain

tag: strain

tag: age

tag: tissue

value: whole brain

value: Nova1/2 double knockout


title: Vector-2

tag: cell type


title: shet158 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47557.gif

label_protocol: A universal reference RNA (pooled from 11 cell lines) was labeled identically but with Cy3-dUTP

value: 529 days

tag: genotype


title: shet057 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47448.gif

source_name: 00PB711; Sample source=PB; CBF group=t(8;21)

value: 1955 days

value: alive


title: shet206 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47492.gif

value: 980 days

value: normal karyotype

value: female


title: shet155 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47468.gif

value: 378 days

value: other


title: shet029 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47443.gif

value: 2692 days


title: shet033 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47446.gif

value: Stratagene common reference

source_name: 01PB2190; Sample source=PB; CBF group=t(8;21)

value: 1098 days


title: shet171 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47475.gif

value: 1452 days


title: shet032 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47445.gif

value: 1641 days


title: shet138 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47464.gif

value: 546 days

value: dead

value: male


title: shet186 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47482.gif

value: 1673 days

value: wt


title: shet118 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47458.gif

value: 703 days


title: shet085 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47454.gif

value: 229 days


title: shet119 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47459.gif

value: 2603 days

value: alive

value: 1 (mut)


title: shet196 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47487.gif

value: 288 days


title: shet116 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47457.gif

value: 197 days

value: normal karyotype

value: female


title: shet208 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47494.gif

value: Stratagene common reference

source_name: 02PB2036; Sample source=PB; CBF group=inv(16)

value: 1632 days


title: shet086 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47455.gif

value: 4 days


title: shet198 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47489.gif

value: 1066 days


title: shet205 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47491.gif

value: 1469 days

tag: npm1 mutation status

value: mutated


title: shet156 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47555.gif

value: 29 days

value: dead

value: other

value: TET2 mut


title: shet055 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47447.gif

source_name: 00PB697; Sample source=PB; CBF group=inv(16)

value: 2262 days

value: wt


title: shet184 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47479.gif

value: 49 days

value: complex karyotype


title: shet060 | inv(3)/t(3;3)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47451.gif

value: 162 days

value: male


title: shet188 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47484.gif

value: 1262 days

value: alive

value: normal karyotype


title: shet059 | t(11q23)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47450.gif

value: Stratagene common reference

value: 523 days

value: female


title: shet197 | t(6;9)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47488.gif

value: 179 days


title: shet207 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47493.gif

value: 401 days


title: shet194 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47485.gif

value: 26 days

value: dead


title: shet173 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47478.gif

value: 233 days


title: shet139 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47465.gif

value: 433 days


title: shet154 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47467.gif

value: 98 days

value: wt


title: shet187 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47483.gif

source_name: 02KM801; Sample source=BM; CBF group=inv(16)

value: 1555 days


title: shet084 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47453.gif

value: 406 days


title: shet195 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47486.gif

value: 556 days

value: other

value: male


title: shet157 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47556.gif

value: 356 days

value: complex karyotype


title: shet058 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47449.gif

value: Stratagene common reference

source_name: 01KM469; Sample source=BM; CBF group=inv(16)

value: 2012 days

value: alive


title: shet141 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47466.gif

value: 1726 days

value: normal karyotype


title: shet083 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47452.gif

value: 661 days

value: dead

value: 1 (mut)


title: shee024 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42038.gif

value: 389 days

value: mutated


title: shet204 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47490.gif

value: 277 days

value: female

value: wt


title: shee160 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43406.gif

value: 1284 days


title: shee008 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42032.gif

tag: disease state time


title: shee057 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42642.gif

value: 438 days

value: WT

value: male


title: shee066 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42646.gif

value: Stratagene common reference

source_name: 00PB369; Sample source=PB; CBF group=inv(16)

value: 660 days


title: shee208 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43863.gif

value: 604 days


title: shee188 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43812.gif

source_name: 02PB184; Sample source=PB; CBF group=t(8;21)

value: 1213 days

value: alive


title: shee136 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42882.gif

value: 1385 days


title: shee229 | t(11q23)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/44125.gif

value: 711 days

value: dead


title: shee178 | t(9;11)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43798.gif

value: 442 days


title: shee118 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42874.gif

source_name: 01PB1111; Sample source=PB; CBF group=inv(16)

value: 2150 days


title: shee219 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/44117.gif

value: 12 days


title: shee197 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43816.gif

value: 1878 days

value: normal karyotype


title: shee176 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43796.gif

value: 19 days

value: mutated

value: female

value: wt


title: shee139 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43261.gif

value: Stratagene common reference

source_name: 01KM1951; Sample source=BM; CBF group=inv(16)

value: 1948 days


title: shee116 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42872.gif

value: 123 days


title: shee196 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43815.gif

value: 1194 days

value: male


title: shee179 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43799.gif

value: 271 days


title: shee098 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42748.gif

value: 402 days

value: WT

value: TET2 mut


title: shee209 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43864.gif

value: 935 days

value: alive


title: shee206 | inv(3)/t(3;3)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43861.gif

value: 64 days

value: dead


title: shee180 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43800.gif

value: 399 days

value: normal karyotype


title: shee056 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42641.gif

value: 252 days

value: female


title: shfe252 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63002.gif

value: Stratagene common reference

value: 167 days

value: wt


title: shet136 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-12/47463.gif

value: 1008 days


title: shee045 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42539.gif

source_name: 99KM1126; Sample source=BM; CBF group=t(8;21)

value: 2249 days

value: male


title: shfe228 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62745.gif

value: 1334 days

value: 1 (mut)


title: shee227 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/44122.gif

value: 320 days

value: complex karyotype


title: shee011 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42035.gif

value: 4 days


title: shee100 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42750.gif

source_name: 00KM1115; Sample source=BM; CBF group=inv(16)

value: 1661 days

value: alive


title: shfe052 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62371.gif

source_name: 03KM2624; Sample source=BM; CBF group=t(8;21)

value: 1156 days


title: shfe231 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62852.gif

value: 1293 days

value: normal karyotype


title: shfe249 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62856.gif

value: 1074 days

value: female


title: shfe018 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63031.gif

value: Stratagene common reference

value: 780 days

value: dead


title: shfe185 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61962.gif

value: 427 days

value: wt


title: shfe082 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62890.gif

source_name: 98PB845; Sample source=PB; CBF group=t(8;21)

value: 3037 days

value: male


title: shfe017 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63030.gif

value: 519 days


title: shee119 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42875.gif

value: 306 days

value: mutated


title: shee198 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43819.gif

source_name: 02PB717; Sample source=PB; CBF group=t(8;21)

value: 782 days


title: shfe207 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62805.gif

value: 1486 days

value: alive


title: shee210 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43865.gif

value: 21 days


title: shee187 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43811.gif

value: 1697 days


title: shee177 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43797.gif

source_name: 01KM2712; Sample source=BM; CBF group=inv(16)

value: 1256 days


title: shfe208 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62806.gif

source_name: Stratagene common reference

value: 439 days

value: normal karyotype


title: shfe186 | t(9;11)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61979.gif

value: Stratagene common reference

value: 1044 days


title: shee166 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43407.gif

value: 1966 days


title: shfe163 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61898.gif

value: 1782 days

value: female

value: wt


title: shee060 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42645.gif

value: 1919 days


title: shee199 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43859.gif

value: 1119 days

value: dead


title: shfe084 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62895.gif

source_name: 01KM2324; Sample source=BM; CBF group=t(8;21)

value: 31 days

value: male


title: shfe015 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/62999.gif

value: 736 days

value: alive

value: 1 (mut)


title: shee189 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43813.gif

value: 162 days

value: mutated

value: TET2 mut


title: shee146 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43264.gif

value: Stratagene common reference

source_name: 01KM2020; Sample source=BM; CBF group=t(8;21)

value: 420 days


title: shfe226 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62743.gif

value: 264 days

value: normal karyotype


title: shfe160 | del(5q)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56511.gif

value: 406 days

value: female


title: shee110 | del(7q)/-7

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42871.gif

value: 116 days

value: WT

value: wt


title: shfe116 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62537.gif

source_name: 03PB1254; Sample source=PB; CBF group=inv(16)

value: 1532 days


title: shee130 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42881.gif

value: 1596 days

value: male


title: shfe182 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61896.gif

value: 3 days

value: dead


title: shfe085 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62533.gif

source_name: 02KM1787; Sample source=BM; CBF group=t(8;21)

value: 1350 days

value: alive


title: shee012 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42036.gif

value: 2433 days

value: TET2 mut


title: shfe115 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62536.gif

value: Stratagene common reference

source_name: 01PB2170; Sample source=PB; CBF group=inv(16)

value: 426 days


title: shee044 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42538.gif

value: 2276 days

value: normal karyotype


title: shee010 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42034.gif

value: 18 days

value: female


title: shfe184 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61973.gif

value: 1736 days

value: other


title: shfe251 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63001.gif

value: 1002 days

value: wt


title: shee169 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43410.gif

value: 242 days

value: complex karyotype

value: male


title: shfe206 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62804.gif

value: 450 days

value: dead


title: shfe205 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62803.gif

value: 822 days

value: alive


title: shee059 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42644.gif

value: Stratagene common reference

value: 276 days


title: shfe227 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62744.gif

value: 1144 days


title: shee148 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43266.gif

value: 31 days

value: normal karyotype

value: mutated


title: shfe247 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62853.gif

value: 24 days

value: female


title: shfe081 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62889.gif

source_name: 04KM771; Sample source=BM; CBF group=inv(16)

value: 178 days

value: TET2 mut


title: shfe161 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56547.gif

value: 814 days

value: wt


title: shee107 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42752.gif

value: 1989 days

value: male


title: shfe019 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63032.gif

value: 44 days

value: dead


title: shee167 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43408.gif

value: 25 days


title: shee216 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43866.gif

value: Stratagene common reference

source_name: 02KM2620; Sample source=BM; CBF group=inv(16)

value: 1108 days

value: alive


title: shfe183 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61897.gif

value: 854 days

value: other


title: shfe044 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63033.gif

value: 276 days

value: normal karyotype


title: shfe159 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56510.gif

value: 2211 days

value: complex karyotype

value: female


title: shco019 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25415.gif

source_name: AML 104

value: AML 104

value: 3 days

value: TET2 mut


title: shfe162 | del(7q)/-7

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56548.gif

value: 423 days

value: wt


title: shee106 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42751.gif

value: 1733 days

value: male


title: shfe203 | del(7q)/-7

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61981.gif

value: Stratagene common reference

value: 437 days

value: dead


title: shee254 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/41310.gif

value: 277 days


title: shco038 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28217.gif

source_name: AML 48; Sample source=PB; CBF group=t(8;21)

value: 1804 days


title: shco045 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/28566.gif

source_name: AML 81; Sample source=PB; CBF group=inv(16)

value: 2260 days

value: alive


title: shco048 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29436.gif

source_name: AML 116

value: AML 116

value: 895 days

value: normal karyotype


title: shco055 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/29521.gif

value: 2130 days

value: female


title: shee009 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42033.gif

value: 19 days


title: shee138 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42883.gif

value: 1452 days


title: shee218 | inv(3)/t(3;3)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/44116.gif

value: 199 days

value: wt


title: shee023 | del(9q)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42037.gif

value: 2360 days


title: shco058 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/29527.gif

value: Stratagene common reference

source_name: AML 87

value: AML 87

value: 320 days

value: male

value: 1 (mut)


title: shco026 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26040.gif

source_name: AML 109

value: AML 109

value: 2353 days


title: shco030 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26247.gif

source_name: AML 103; Sample source=PB; CBF group=inv(16)

value: 435 days

value: dead


title: shco032 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26254.gif

source_name: AML 40

value: AML 40

value: 218 days

value: normal karyotype

value: WT


title: shee140 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43263.gif

value: 249 days

value: complex karyotype


title: shee226 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/44120.gif

value: 1056 days

value: alive

value: wt


title: shco039 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-04/28219.gif

value: Stratagene common reference

source_name: AML 38; Sample source=PB; CBF group=t(8;21)

value: 339 days

value: TET2 mut


title: shee190 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43814.gif

source_name: Stratagene common reference

value: 729 days

value: mutated

value: male


title: shee058 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42643.gif

value: 297 days

value: female


title: shco056 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/29522.gif

value: 2928 days


title: shco049 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29437.gif

source_name: AML 49

value: AML 49

value: 669 days

value: dead


title: shee097 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42747.gif

value: 255 days

value: normal karyotype

value: WT


title: shco044 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/28565.gif

source_name: AML 100; Sample source=PB; CBF group=inv(16)

value: 2705 days

value: alive


title: shee207 | t(11q23)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43862.gif

value: Stratagene common reference

value: 404 days

value: wt


title: shco029 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26246.gif

source_name: AML 77; Sample source=BM; CBF group=inv(16)

value: 45 days

value: TET2 mut


title: shco027 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26042.gif

source_name: AML 17

value: AML 17

value: 580 days

value: mutated

value: male


title: shee025 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-06/42039.gif

value: 25 days


title: shco057 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/29525.gif

source_name: AML 118

value: AML 118

value: 101 days


title: shee099 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42749.gif

value: 626 days

value: dead

value: female


title: shco022 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25418.gif

source_name: AML 14

value: AML 14

value: 722 days

value: complex karyotype


title: shee117 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42873.gif

value: Stratagene common reference

value: 231 days

value: normal karyotype


title: shee108 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42869.gif

value: 1572 days

value: alive

value: wt


title: shco051 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29442.gif

source_name: AML 115

value: AML 115

value: 2549 days


title: shco053 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-05/29446.gif

source_name: AML 27

value: AML 27

value: 330 days

value: male


title: shee200 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43860.gif

value: 1614 days

value: WT


title: shfe248 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62855.gif

value: 347 days

value: dead


title: shee109 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42870.gif

source_name: 01KM914; Sample source=BM; CBF group=inv(16)

value: 1501 days


title: shco028 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26043.gif

source_name: AML 35

value: AML 35

value: 1805 days

value: mutated

value: female


title: shee159 | del(9q)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43405.gif

value: Stratagene common reference

value: 1246 days


title: shco020 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-02/25416.gif

source_name: AML 5

value: AML 5

value: 248 days

value: complex karyotype

value: wt


title: shco023 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26038.gif

source_name: AML 46

value: AML 46

value: 673 days


title: shee186 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-08/43801.gif

value: 242 days

value: normal karyotype


title: shee168 | t(11q23)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/43409.gif

value: 429 days

value: male


title: shdj080 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33161.gif

source_name: AML 102

value: AML 102

value: 105 days

value: dead


title: shco054 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-06/29520.gif

source_name: AML 117

value: AML 117

value: 1 days


title: shdj067 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33009.gif

value: Stratagene common reference

source_name: AML 97; Sample source=PB; CBF group=inv(16)

value: 3183 days

value: alive


title: shdj070 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33012.gif

source_name: AML 67

value: AML 67

value: 420 days

value: 1 (mut)


title: shco031 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-03/26249.gif

source_name: Stratagene common reference

source_name: AML 65; Sample source=PB; CBF group=inv(16)

value: 2860 days

value: wt


title: shdj091 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33369.gif

source_name: AML 37

value: AML 37

value: 406 days

value: female


title: shee129 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2003-07/42880.gif

source_name: 01PB651; Sample source=PB; CBF group=t(8;21)

value: 470 days

value: male


title: shdj086 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33358.gif

source_name: AML 18

value: AML 18

value: 330 days

value: other


title: shfs168 | del(9q)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61685.gif

value: 1625 days


title: shgn232 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2006-02/66789.gif

value: Stratagene common reference

value: 37 days

value: dead


title: shdj104 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-10/33645.gif

source_name: AML 114; Sample source=PB; CBF group=t(8;21)

value: 2189 days

value: alive


title: shgn103 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2006-01/66257.gif

value: 1537 days

value: complex karyotype


title: shfs171 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61890.gif

value: 271 days

value: wt


title: shfs218 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63189.gif

value: 1207 days

value: normal karyotype


title: shfs156 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62163.gif

value: 1685 days


title: shfs226 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62452.gif

source_name: 03KM2482; Sample source=BM; CBF group=inv(16)

value: 5 days

value: male


title: shfs174 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62277.gif

value: 515 days


title: shfs071 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63371.gif

value: 2324 days

value: female


title: shfs195 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63077.gif

value: Stratagene common reference

value: 462 days


title: shdj077 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33066.gif

source_name: AML 64

value: AML 64

value: 98 days

value: dead

value: WT


title: shdj078 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33067.gif

source_name: AML 24

value: AML 24

value: 36 days

value: complex karyotype


title: shdj096 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33507.gif

source_name: AML 89; Sample source=BM; CBF group=inv(16)

value: 1802 days

value: alive

value: wt


title: shdj071 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33013.gif

source_name: AML 101

value: AML 101

value: 2555 days

value: TET2 mut


title: shdj083 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33166.gif

source_name: AML 119

value: AML 119

value: 1 days


title: shfs169 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61888.gif

value: Stratagene common reference

value: 609 days

value: female


title: shdj075 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33064.gif

source_name: AML 30

value: AML 30

value: 2322 days

value: normal karyotype

value: male


title: shfs217 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63188.gif

value: 1092 days


title: shdj099 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33564.gif

source_name: AML 22

value: AML 22

value: 155 days

value: dead

value: WT

value: 1 (mut)


title: shfs215 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63185.gif

value: 1232 days

value: alive


title: shfs188 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62271.gif

value: 118 days

value: complex karyotype

value: wt


title: shdj069 | t(9;11)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33011.gif

value: Stratagene common reference

source_name: AML 50

value: AML 50

value: 2752 days


title: shdj095 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33504.gif

source_name: AML 90; Sample source=BM; CBF group=inv(16)

value: 2217 days


title: shfs150 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62197.gif

value: 1192 days


title: shfs183 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63382.gif

value: 18 days

value: normal karyotype

value: female


title: shdj098 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33563.gif

source_name: AML 55

value: AML 55

value: 773 days

value: male


title: shfs166 | del(7q)/-7

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62227.gif

source_name: Stratagene common reference

value: 1247 days


title: shdj105 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-10/33646.gif

source_name: AML 11

value: AML 11

value: 206 days

value: dead


title: shdj111 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-11/35290.gif

source_name: AML 63

value: AML 63

value: 34 days

value: complex karyotype


title: shdj079 | t(9;11)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33068.gif

value: Stratagene common reference

source_name: AML 68

value: AML 68

value: 2504 days

value: alive

value: wt


title: shfa148 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/54067.gif

value: 283 days


title: shfs079 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-02/59322.gif

value: 3007 days

value: other

value: female


title: shfs189 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62272.gif

value: 921 days

value: male


title: shfa086 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62632.gif

value: 845 days

value: normal karyotype


title: shdj112 | del(7q)/-7

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-11/35291.gif

source_name: AML 52

value: AML 52

value: 1589 days


title: shfa146 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/53881.gif

value: 2981 days

value: TET2 mut


title: shdj076 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33065.gif

value: Stratagene common reference

source_name: AML 32

value: AML 32

value: 1 days

value: dead


title: shfa161 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56507.gif

value: 81 days

value: complex karyotype

value: wt


title: shdj101 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33566.gif

source_name: AML 98; Sample source=PB; CBF group=t(8;21)

value: 16 days


title: shfs173 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62276.gif

value: 495 days

value: other


title: shfs069 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63369.gif

value: 1082 days

value: alive

value: female


title: shfa068 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62316.gif

source_name: 03PB2246; Sample source=PB; CBF group=inv(16)

value: 1459 days

value: male


title: shfa244 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63145.gif

value: 1911 days

value: normal karyotype


title: shfs068 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63368.gif

value: Stratagene common reference

value: 54 days


title: shfs198 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63080.gif

value: 1244 days


title: shfs130 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-05/61363.gif

value: 104 days

value: dead


title: shfa188 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62658.gif

value: 1766 days


title: shfs187 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63386.gif

value: 2311 days

value: wt


title: shfs070 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63370.gif

value: 16 days

value: TET2 mut


title: shfs110 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60268.gif

value: 597 days


title: shdj066 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32815.gif

source_name: AML 9

value: AML 9

value: 1914 days

value: alive


title: shfa213 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62678.gif

value: 1678 days

value: female


title: shfa214 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62679.gif

value: 1322 days

value: normal karyotype


title: shfs167 | del(7q)/-7

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61684.gif

value: Stratagene common reference

value: 462 days

value: male


title: shfa089 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62326.gif

source_name: 00KM598; Sample source=BM; CBF group=t(8;21)

value: 50 days

value: dead


title: shfa164 | del(9q)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56508.gif

value: 1174 days


title: shfa085 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62631.gif

value: 664 days

value: wt


title: shfa105 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62327.gif

source_name: 03PB2423; Sample source=PB; CBF group=inv(16)

value: 1410 days


title: shdj108 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-10/33649.gif

source_name: AML 7

value: AML 7

value: 137 days


title: shdj090 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33368.gif

source_name: AML 33

value: AML 33

value: 2325 days

value: TET2 mut


title: shfa212 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62623.gif

value: 555 days

value: female


title: shdj094 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33500.gif

source_name: AML 84; Sample source=BM; CBF group=inv(16)

value: 515 days


title: shdj068 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33010.gif

value: Stratagene common reference

source_name: AML 86

value: AML 86

value: 2571 days

value: alive


title: shfa046 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62306.gif

source_name: 02PB2316; Sample source=PB; CBF group=inv(16)

value: 855 days

value: dead

value: male


title: shfa149 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/54068.gif

value: 267 days

value: complex karyotype

value: 1 (mut)

value: wt


title: shfa243 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62676.gif

value: 427 days

value: normal karyotype


title: shfa185 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62655.gif

value: 214 days


title: shfs061 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63366.gif

value: 1309 days


title: shfa125 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62351.gif

value: 2607 days


title: shfa048 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62628.gif

value: 422 days

value: female


title: shdj085 | t(9;11)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33168.gif

value: Stratagene common reference

source_name: AML 111

value: AML 111

value: 284 days


title: shfa187 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62657.gif

source_name: Stratagene common reference

value: 403 days


title: shfs154 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61682.gif

value: 176 days

value: dead


title: shfa211 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62622.gif

value: 1889 days

value: alive


title: shfa065 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62629.gif

value: 1315 days

value: male


title: shfs184 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63383.gif

value: 21 days

value: wt


title: shfs090 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-02/59328.gif

value: 405 days

value: complex karyotype


title: shdj088 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33365.gif

source_name: AML 59

value: AML 59

value: 2409 days

value: other

value: TET2 mut


title: shfa160 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/54069.gif

value: Stratagene common reference

value: 698 days


title: shfs051 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63288.gif

value: 542 days

value: normal karyotype

value: female


title: shfa088 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62325.gif

source_name: 02KM721; Sample source=BM; CBF group=t(8;21)

value: 1859 days


title: shfa047 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62307.gif

source_name: 02KM1478; Sample source=BM; CBF group=inv(16)

value: 30 days

value: alive


title: shfa186 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62656.gif

value: 125 days

value: dead


title: shfs216 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63187.gif

value: 203 days

value: wt


title: shdj102 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/33567.gif

source_name: AML 16; Sample source=BM; CBF group=t(8;21)

value: 1175 days


title: shdj106 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-10/33647.gif

source_name: AML 31

value: AML 31

value: 343 days

value: male


title: shfa044 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62304.gif

source_name: 03KM766; Sample source=BM; CBF group=t(8;21)

value: 1286 days


title: shfa066 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62314.gif

value: Stratagene common reference

source_name: 02KM2755; Sample source=BM; CBF group=t(8;21)

value: 1119 days


title: shfa087 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62634.gif

value: 851 days


title: shfs057 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63289.gif

value: 1325 days

value: normal karyotype

value: TET2 mut


title: shfa163 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56509.gif

value: 241 days

value: complex karyotype

value: female


title: shfa069 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62630.gif

value: 1319 days

value: alive


title: shfa215 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62680.gif

value: 208 days

value: dead

value: wt


title: shfa109 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62350.gif

source_name: 00KM2008; Sample source=BM; CBF group=t(8;21)

value: 1607 days


title: shfa127 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62888.gif

source_name: 00PB667; Sample source=PB; CBF group=inv(16)

value: 2013 days

value: male


title: shfs060 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63292.gif

value: Stratagene common reference

value: 26 days

value: 1 (mut)


title: shfa189 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62621.gif

value: 407 days


title: shfs186 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63385.gif

value: 2464 days

value: normal karyotype


title: shfs181 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63035.gif

scan_protocol: GenePix 4000B GenePix 4000B GenePix 4000B

value: 1353 days


title: shfa162 | del(5q)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-10/56506.gif

value: 181 days


title: shfa147 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2004-07/54066.gif

value: 34 days

value: complex karyotype

value: female


title: shfa108 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62324.gif

source_name: 04PB820; Sample source=PB; CBF group=inv(16)

value: 1211 days

value: alive


title: shfs157 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62165.gif

value: 955 days

value: other

value: wt


title: shfa242 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62675.gif

value: 1233 days


title: shfs151 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/62198.gif

value: Stratagene common reference

source_name: 03PB2340; Sample source=PB; CBF group=inv(16)

value: 1196 days

value: male


title: shfs159 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-05/61555.gif

source_name: 03KM3633; Sample source=BM; CBF group=inv(16)

value: 1089 days


title: shfs227 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62453.gif

source_name: 99PB1364; Sample source=PB; CBF group=inv(16)

value: 1816 days


title: shfs067 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63367.gif

value: 8 days

value: dead

value: normal karyotype


title: shfs091 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-02/59329.gif

value: 1823 days


title: shfs197 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63079.gif

value: 1477 days


title: shfa107 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62323.gif

source_name: 01KM309; Sample source=BM; CBF group=t(8;21)

value: 1570 days


title: shfs182 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63381.gif

value: 1354 days

value: 1 (mut)


title: shfs049 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63287.gif

value: 1534 days

value: alive


title: shfs165 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-05/61556.gif

value: 1262 days

value: other

value: female

value: wt


title: shfs170 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61889.gif

value: Stratagene common reference

source_name: 03PB618; Sample source=PB; CBF group=inv(16)

value: 26 days

value: male


title: shfs120 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-05/61314.gif

value: 2806 days


title: shfs196 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63078.gif

value: 1403 days


title: shcz085 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32810.gif

source_name: AML 34; Sample source=BM; CBF group=inv(16)

value: 1500 days


title: shfs121 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-05/61315.gif

source_name: Stratagene common reference

value: 1942 days


title: shfa241 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62681.gif

value: 1840 days

value: normal karyotype


title: shfs153 | t(6;9)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-05/61553.gif

value: 396 days

value: dead

value: TET2 mut


title: shfs229 | inv(16)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-07/62455.gif

source_name: 03KM3014; Sample source=BM; CBF group=inv(16)

value: 1272 days

value: alive


title: shcz211 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32077.gif

source_name: AML 96

value: AML 96

value: 277 days


title: shfs155 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-06/61683.gif

value: 1040 days

value: other

value: wt


title: shcz087 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32812.gif

value: Stratagene common reference

source_name: AML 4; Sample source=BM; CBF group=t(8;21)

value: 214 days

value: male


title: shfs225 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63191.gif

value: 424 days


title: shcz219 | t(9;11)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32543.gif

source_name: AML 69

value: AML 69

value: 1930 days

value: female


title: shcz090 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32903.gif

source_name: AML 44; Sample source=PB; CBF group=t(8;21)

value: 2075 days


title: shcz225 | t(9;11)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32557.gif

source_name: AML 21

value: AML 21

value: 22 days

value: dead


title: shcz094 | inv(3)/t(3;3)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32907.gif

source_name: AML 47

value: AML 47

value: 478 days


title: shfs058 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63290.gif

value: 80 days

value: normal karyotype


title: shfs059 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-08/63291.gif

value: 335 days

value: alive


title: shfs158 | t(15;17)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-05/61554.gif

value: Stratagene common reference

value: 1294 days

value: wt


title: shfs134 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-05/61388.gif

value: 668 days

value: male

value: 1 (mut)


title: shcz111 | +8

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32664.gif

source_name: AML 107

value: AML 107

value: 8 days

value: TET2 mut


title: shcz083 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32544.gif

source_name: AML 1

value: AML 1

value: 215 days

value: complex karyotype

value: female


title: shcz084 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32545.gif

source_name: AML 10

value: AML 10

value: 235 days

value: dead

value: WT


title: shcz210 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-08/32076.gif

value: Stratagene common reference

source_name: AML 45

value: AML 45

value: 291 days

value: normal karyotype

value: mutated


title: shfs104 | complex karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-03/60267.gif

value: 105 days

value: male

value: wt


title: Ko_DyvaP_vs_Ko_WT_rep1

status: Public on Jun 29 2010

city: Greifswald

first: Haike

last: Antelmann

address: F.-L.-Jahnstr. 15

department: Institute for Microbiology

institute: University of Greifswald

hyb_protocol: Before hybridization of samples, the B. subtilis full genomic DNA microarray was pre-hybridized at 42oC for at least 45 min in 2x SSC, 0.05% SDS, 1% BSA, then the slide was washed six times with A. dest and was dried at 1500 rpm, RT for 5 min. Afterwards, the labelled cDNA mixture was denatured for 2 min at 95oC prior to hybridization, which was performed for at least 16h at 42oC. The hybridized slide was washed at RT for 5 min with 0.2x SSC, 0.1% SDS, 5 min with 0.2x SSC (two times) and was subsequently dried at RT at a speed of 1500 rpm for 5 min.

scan_protocol: Array was scanned with the ArrayWoRX scanner (GeneScan, Freiburg, Germany) and the ScanArray Express scanner (PerkinElmer Life and Analytical Sciences, Rodgau-Jügesheim, Germany). Spot finding and image analyses were done with GeneSpring software from Agilent Technologies (version 7.1).

data_processing:
Agilent Feature Extraction Software (v 9.5.3.1 ) was used for background subtraction and LOWESS normalization. Log2 (Cy5/Cy3) ratios of background-subtracted, normalized intensities were determined. Induced and repressed genes with an expression level ratio of >3 or <0.33 in both independent experiments, respectively, were regarded as significant genes.

Induction-fold equals to average of yvaP mutant samples (Cy5) / average of wild-type samples (Cy3). Repression-fold equals to average of wild-type samples (Cy3) / average of yvaP mutant samples (Cy5). Average represents the average of medians for duplicate spots (minus median of background).

organism: Bacillus subtilis

source_name: Ko_WT, control wild type

label_protocol: For the labelling of cDNA, 25 µg total RNA with a B. subtilis gene-specific primer mix (2.5 nM final concentration) (Eurogentec S.A., Seraing, Belgium) was used. For the external control, 1 ng of Arabidopsis thaliana rbcL RNA (Stratagene, Amsterdam, Netherlands) was added and the reaction mix was incubated at 65oC for 10 min. The mixture was cooled down for 10 min at RT and the following reagents were added and mixed: 10 µl 5x Superscript reaction buffer, 4 µl of a dNTP-master mix (5 mM dATP, 5 mM dGTP, 2 mM dTTP, 5 mM dCTP) (Roche Diagnostics, Penzberg, Germany), 0.1 mM Cy3 dUTP (for untreated sample) and 0.1 mM Cy5 dUTP (for the treated sample) (GE Healthcare, Freiburg, Germany), 0.01 M DTT, 1 µl Superscript reverse transcriptase (Invitrogen Life Technologies, Karlsruhe, Germany). The whole mixture was incubated at 42oC for 2h. Afterwards, 10 µm 1M NaOH was added for hydrolysis of RNA and incubated at 65oC for 10 min. 10 µm 1M HCl were added for neutralization and the reaction was filled up with 150 µl TE buffer  (pH 8.0). The labelled cDNA was purified using the CyScribe GFX Purification Kit (GE Healthcare, Freiburg, Germany) as described by the manufacturer. After purification, both samples (untreated and treated) were combined in one Eppendorf tube and the volume was concentrated in a speed-vac. The labelled cDNA mix was re-suspended in 17 µl hybridization buffer (MWG AG Biotech, Ebersberg, Germany) and used for hybridization.

growth_protocol: B. subtilis 168 wild type (WT) and DyvaP mutant strains were grown in Belitsky minimal medium and harvested at OD500 of 0.4.

extract_protocol: Total RNA was isolated by the acid phenol method as described (Majumdar et al. 1991).

value: wild type

source_name: Ko_DyvaP, DyvaP

value: yvaP mutant


title: Ko_DyvaP_vs_Ko_WT_rep2


title: shfs078 | other

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2005-02/59281.gif

value: 59 days

value: other

value: 1 (mut)


title: shcz222 | t(9;11)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32554.gif

source_name: AML 83

value: AML 83

value: 1866 days

value: alive

value: female


title: shcz089 | t(8;21)

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32902.gif

value: Stratagene common reference

source_name: AML 105; Sample source=PB; CBF group=t(8;21)

value: 1430 days


title: Serous ovarian cancer 93

status: Public on Mar 22 2010

city: Niigata

first: Kosuke

last: Yoshihara

address: 1-757 Asahimachi-dori

institute: Niigata University

hyb_protocol: Cy3-labeled cRNAs (1.65 µg) were hybridized for 17 hours at 65°C to an Agilent Whole Human Genome Oligo Microarray in a rotating Agilent hybridization oven.

scan_protocol: The hybridized microarray was washed and then scanned in Cy3 channel with the Agilent DNA Microarray Scanner (model G2565AA).

data_processing: Signal intensity per spot was generated from the scanned image with Feature Extraction Software ver8.5 (Agilent Technologies) in the default settings. Data normalization was performed in GeneSpring GX 10 (Agilent Technologies) as follows: (i) Threshold raw signals were set to 1.0. (ii) Quantile normalization was chosen as normalized algorithm. (iii) Baseline was transformed to median of all samples.

source_name: serous ovarian cancer

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labering Kit, one-color (Agilent Technologies) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).

extract_protocol: Total RNA was extracted from tissue samples using TRIzol reagent (Invitrogen, Carlsbad, CA, USA) following the manufacturer's recommendations. RNA was examined with a 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA, USA) using an RNA 6000 Nano LabChip (Agilent Technologies)

tag: tumor grade

tag: Stage

value: IIIb

tag: cytoreductive surgery

value: optimal

tag: progression-free survival (m)

tag: recurrence (1)

tag: overall survival (m)

tag: death (1)

tag: disease state

value: serous ovarian cancer

value: cancer tumor


title: Serous ovarian cancer 92

value: IV

value: not optimal


title: Serous ovarian cancer 95

value: IIIc


title: shcz092 | normal karyotype

description:
Simple annotation: Myeloid Leukemias, Acute Myeloid Leukemia
Image: http://smd.stanford.edu/MicroArray/gifs/2002-09/32905.gif

source_name: Stratagene common reference

tag: reference

source_name: AML 110

tag: source

value: AML 110

tag: overall survival time

value: 322 days

tag: overall survival status

value: dead

value: normal karyotype

value: mutated

tag: gender

value: male

tag: runx1 mutation

value: wt