title: ES[MC1R(20):tetTrpv2(9)]_day2_Dox-_rep1

description:
Trpv2(9)]_day2_Dox-
Raw data file:
5011-US12302333_251508710864_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetTgm2(14)]_day2_Dox-_rep2

status: Public on Nov 10 2011

type: RNA

city: Baltimore

first: Minoru

last: Ko

state: MD

address: 251 Bayview Blvd, Suite 100, 10C

department: National Institute on Aging

country: USA

institute: NIH

description:
Tgm2(14)]_day2_Dox-
Raw data file:
4985-US12302333_251508710858_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.

hyb_protocol: Slides were hybridized according to the manufacturer's protocol (Two-Color Microarray-Based Genr Expression Analysis Protocol, Product # G4140-90050, Version 5.0.1, August 2006).

scan_protocol: Slides were scanned with an Agilent DNA Microarray Scanner (model G2505-64120) at 100% and 10% PMT in both channels, with a scan resolution of 5um.

data_processing:
The data is normalized with the following method:
(1) Take values from the columns gDyeNormSignal in the raw files and log-transform them using: log10(max(x,10)). The data is then combined into a matrix.
(2) in each column estimate 15 quantiles that correspond to ratios: 1/30, 3/30, ... 29/30.
(3) estimate 15 target quantiles as average quantiles across all columns.
(4) transform data using a piece-linear function that converts actual quantiles in each column into target quantiles.
(5) back-transform data with exponent function.
The result is used as the normalized VALUE.
More detailed information with error correction can be found at http://lgsun.grc.nia.nih.gov/ANOVA/help.html#arrayjoin

molecule: total RNA

organism: Mus musculus

label_protocol: Total RNA was labeled using the Agilent Low RNA Input Fluorescent Linear Amplification kit according to the manufacturer's instructions.

extract_protocol: Stratagene Absolute RNA extraction kit

tag: transcription factor

tag: cell type

value: Embryonic Stem Cells

tag: strain

tag: gender

value: male

tag: culture condition

value: Dox-

tag: development stage

value: embryo

tag: individual identifier


title: ES[MC1R(20):tetUgp2(20)]_day2_Dox+_rep2

description:
Ugp2(20)]_day2_Dox+
Raw data file:
4909-US12302333_251508710839_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.

data_processing:
Data are extracted with Agilent Feature Extraction Software.The data were further processed with NIA ANOVA tool utilities.See http://lgsun.grc.nia.nih.gov/ANOVA for details.
The data is normalized with the following method:
(1) Take values from the columns rDyeNormSignal in the raw files and log-transform them using: log10(max(x,10)). The data is then combined into a matrix.
(2) in each column estimate 15 quantiles that correspond to ratios: 1/30, 3/30, ... 29/30.
(3) estimate 15 target quantiles as average quantiles across all columns.
(4) transform data using a piece-linear function that converts actual quantiles in each column into target quantiles.
(5) back-transform data with exponent function.
The result is used as the normalized VALUE.
More detailed information with error correction can be found at http://lgsun.grc.nia.nih.gov/ANOVA/help.html#arrayjoin

tag: transcript factor


title: ES[MC1R(20):tetTcfcp2l1(6)]_day2_Dox-_rep1

description:
Tcfcp2l1(6)]_day2_Dox-
Raw data file:
4928-US12302333_251508710845_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetTcfcp2l1(6)]_day2_Dox-_rep2

description:
Tcfcp2l1(6)]_day2_Dox-
Raw data file:
4929-US12302333_251508710845_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetTgm2(14)]_day2_Dox+_rep2

description:
Tgm2(14)]_day2_Dox+
Raw data file:
4985-US12302333_251508710858_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetTgif1(8)]_day2_Dox-_rep2

description:
Tgif1(8)]_day2_Dox-
Raw data file:
4966-US12302333_251508710854_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetTgm2(14)]_day2_Dox+_rep1

description:
Tgm2(14)]_day2_Dox+
Raw data file:
4983-US12302333_251508710858_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetTcfap2c(18)]_day2_Dox-_rep2

description:
Tcfap2c(18)]_day2_Dox-
Raw data file:
5001-US12302333_251508710863_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetUgp2(20)]_day2_Dox+_rep1

description:
Ugp2(20)]_day2_Dox+
Raw data file:
4907-US12302333_251508710839_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetTgif1(8)]_day2_Dox+_rep2

description:
Tgif1(8)]_day2_Dox+
Raw data file:
4966-US12302333_251508710854_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetTcfap2c(18)]_day2_Dox+_rep2

description:
Tcfap2c(18)]_day2_Dox+
Raw data file:
5001-US12302333_251508710863_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetTcfap2c(18)]_day2_Dox+_rep1

description:
Tcfap2c(18)]_day2_Dox+
Raw data file:
4999-US12302333_251508710863_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetTcfcp2l1(6)]_day2_Dox+_rep2

description:
Tcfcp2l1(6)]_day2_Dox+
Raw data file:
4929-US12302333_251508710845_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetTcfcp2l1(6)]_day2_Dox+_rep1

description:
Tcfcp2l1(6)]_day2_Dox+
Raw data file:
4928-US12302333_251508710845_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetTgif1(8)]_day2_Dox+_rep1

description:
Tgif1(8)]_day2_Dox+
Raw data file:
4965-US12302333_251508710854_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSub1(12)]_day2_Dox-_rep2

description:
Sub1(12)]_day2_Dox-
Raw data file:
4955-US12302333_251508710851_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSub1(12)]_day2_Dox-_rep1

description:
Sub1(12)]_day2_Dox-
Raw data file:
4953-US12302333_251508710851_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetTbx5(2)]_day2_Dox+_rep2

description:
Tbx5(2)]_day2_Dox+
Raw data file:
4838-US12302333_251508710822_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSub1(12)]_day2_Dox+_rep2

description:
Sub1(12)]_day2_Dox+
Raw data file:
4955-US12302333_251508710851_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetTbx5(2)]_day2_Dox-_rep2

description:
Tbx5(2)]_day2_Dox-
Raw data file:
4838-US12302333_251508710822_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetTcfap2c(18)]_day2_Dox-_rep1

description:
Tcfap2c(18)]_day2_Dox-
Raw data file:
4999-US12302333_251508710863_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetStra13(12)]_day2_Dox-_rep2

description:
Stra13(12)]_day2_Dox-
Raw data file:
4984-US12302333_251508710857_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetTbx5(2)]_day2_Dox-_rep1

description:
Tbx5(2)]_day2_Dox-
Raw data file:
4836-US12302333_251508710822_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: Strain O46 during exponential phase (replicate 3)

status: Public on Nov 11 2011

type: mixed

city: Geneva

first: FRANCOIS

last: Patrice

state: Ge 4

address: Rue Gabrielle-Perret-Gentil, 4

department: Service of Infectious Diseases

country: Switzerland

institute: Genomic Research Laboratory

description: S. aureus gDNA pool

hyb_protocol: A mixture of RNA from specific condition and gDNA (500 ng total) was diluted in 50 µl Agilent hybridization buffer, and hybridized at a temperature of 60°C for 17 hours in a dedicated hybridization oven.

scan_protocol: 100% PMT using Agilent scanner

data_processing: Local background-subtracted signals were corrected for unequal dye incorporation or unequal load of labelled product. The algorithm consisted of a rank consistency filter and a curve fit using the default LOWESS (locally weighted linear regression) method

label: cyanine 3

organism: Staphylococcus aureus

source_name: Strain O46 during exponential phase

label_protocol: Random Primers with Kleenow fragment (BioPrime, Invitrogen)

growth_protocol: mid-log phase or stationary phase at an optical density at 600 nm of 0.5 or 1.0, respectively

extract_protocol: Ethanol-acetone. Then, washings and centrigugation followed by enzymatic digestion and RNeasy extration using DNAse treatment

label: cyanine 5

molecule: genomic DNA

source_name: Pool gDNA

growth_protocol: Mueller-Hinton broth 37 degrees C

extract_protocol: DNeasy Kit from Qiagen

value: NCTC 8325

value: COL


title: B16-F10 cells exposed to experimental hypoxia (1% oxygen) in Billups_Rothenberg chamber, biological replica 1

city: Warsaw

first: Michal

last: Swierniak

address: Banacha 2C

department: Centre of New Technologies

country: Poland

institute: University of Warsaw

description: Gene expression data from B16-F10 cells exposed to hypoxia (1% oxygen) for 24 hours

hyb_protocol: Following fragmentation, 16 μg of cRNA were hybridized for 16 hr at 45ºC on Mouse Expression Arrays 430A (Affymetrix). GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: Arrays were scanned using Hewlett-Packard GeneArray G2500A scanner with MAS5 software (Affymetrix).

data_processing: Data was acquired using GCOS 1.2 software (Affymetrix). The preprocessing was performed by Robust Multiarray Analysis (RMA, Bioconductor).

label: biotin

source_name: B16-F10 cells exposed to hypoxia

label_protocol: Total RNA (8 μg) was used for synthesis of double stranded cDNA according to manufacturer's instructions. Half of the cDNA volume was used for synthesis of biotynylated cRNA with the BioArray High Yield RNA Transcript Labeling Kit (Enzo Diagnostics).

growth_protocol: The mouse melanoma B16-F10 cells were grown in CO2 incubator at 37°C in RPMI medium (Sigma-Aldrich) supplemented with 10% fetal bovine serum (ICN).

extract_protocol: Total RNA was isolated using Rneasy Mini Kit (Qiagen) according to the manufacturer's instructions.

treatment_protocol: Hypoxic cpnditions were introduced by incubating the cells in 1% oxygen using either Billubs-Rothenberg chamber or oxygen flow-regulated incubator for 24 h. Hypoxia-mimicry was performed by treating the cells with either 100 μM or 200 μM CoCl2 for 24 h.

tag: cell line

tag: cell origin

value: melanoma

tag: biomaterial provider

value: ATCC CRL-6475T

tag: condition


title: ES[MC1R(20):tetStra13(12)]_day2_Dox-_rep1

description:
Stra13(12)]_day2_Dox-
Raw data file:
4982-US12302333_251508710857_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSox7(32)]_day2_Dox-_rep1

description:
Sox7(32)]_day2_Dox-
Raw data file:
4978-US12302333_251508710857_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetTbx5(2)]_day2_Dox+_rep1

description:
Tbx5(2)]_day2_Dox+
Raw data file:
4836-US12302333_251508710822_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSox7(32)]_day2_Dox+_rep1

description:
Sox7(32)]_day2_Dox+
Raw data file:
4978-US12302333_251508710857_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSox7(32)]_day2_Dox-_rep2

description:
Sox7(32)]_day2_Dox-
Raw data file:
4980-US12302333_251508710857_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSox11(2)]_day2_Dox-_rep1

description:
Sox11(2)]_day2_Dox-
Raw data file:
5002-US12302333_251508710862_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSub1(12)]_day2_Dox+_rep1

description:
Sub1(12)]_day2_Dox+
Raw data file:
4953-US12302333_251508710851_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetStra13(12)]_day2_Dox+_rep1

description:
Stra13(12)]_day2_Dox+
Raw data file:
4982-US12302333_251508710857_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetStra13(12)]_day2_Dox+_rep2

description:
Stra13(12)]_day2_Dox+
Raw data file:
4984-US12302333_251508710857_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSox11(2)]_day2_Dox-_rep2

description:
Sox11(2)]_day2_Dox-
Raw data file:
5004-US12302333_251508710862_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSox15(10)]_day2_Dox-_rep2

description:
Sox15(10)]_day2_Dox-
Raw data file:
4992-US12302333_251508710860_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSox15(10)]_day2_Dox-_rep1

description:
Sox15(10)]_day2_Dox-
Raw data file:
4990-US12302333_251508710860_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSox11(2)]_day2_Dox+_rep2

description:
Sox11(2)]_day2_Dox+
Raw data file:
5004-US12302333_251508710862_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSox11(2)]_day2_Dox+_rep1

description:
Sox11(2)]_day2_Dox+
Raw data file:
5002-US12302333_251508710862_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSox7(32)]_day2_Dox+_rep2

description:
Sox7(32)]_day2_Dox+
Raw data file:
4980-US12302333_251508710857_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSox15(10)]_day2_Dox+_rep1

description:
Sox15(10)]_day2_Dox+
Raw data file:
4990-US12302333_251508710860_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSix1(15)]_day2_Dox-_rep1

description:
Six1(15)]_day2_Dox-
Raw data file:
4920-US12302333_251508710844_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSmad6(9)]_day2_Dox+_rep2

description:
Smad6(9)]_day2_Dox+
Raw data file:
4904-US12302333_251508710840_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSmad6(9)]_day2_Dox+_rep1

description:
Smad6(9)]_day2_Dox+
Raw data file:
4902-US12302333_251508710840_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSix1(15)]_day2_Dox-_rep2

description:
Six1(15)]_day2_Dox-
Raw data file:
4922-US12302333_251508710844_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSox15(10)]_day2_Dox+_rep2

description:
Sox15(10)]_day2_Dox+
Raw data file:
4992-US12302333_251508710860_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSirt3(19)]_day2_Dox-_rep1

description:
Sirt3(19)]_day2_Dox-
Raw data file:
4832-US12302333_251508710822_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: B104 control rep2

city: La Jolla

first: Julie

last: Pilotte

state: CA

address: 10550 North Torrey Pines Rd, Sbr-14

department: Neurobiology

institute: The Scripps Research Institute

description: microRNA expression 48 hours after mock transfection

hyb_protocol: Hybridization was done according to Agilent's specifications.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505B) using one color scan setting for 1x44k array slides (Scan Area 61x21.6 mm, Scan resolution 10um, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: Microarrays were analyzed with Genespring software. The Agilent Feature Extraction tool was used to obtain the signal values and detection above background for the Agilent chip.  Processing of the data was performed within the Bioconductor project and the R program software (R is available as Free Software under the terms of the Free Software Foundation's GNU General Public License).  The scale normalization method used was proposed by Yang et al [49, 50] and is further elaborated by Smyth and Speed [51]. Log-values were scaled to have the same median-absolute-deviation (MAD) across arrays.  The 578 Human miRNAs were filtered down to 216 by excluding those miRNAs with signals not detected above background for all the samples.

source_name: B104 clonal cell line, transfected, 48 hours

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from total RNA using the microRNA Spike-In Kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

growth_protocol: B104 cells were cultured in DMEM supplemented with 10% FBS, 200 mM L-glutamine and penicillin/streptomycin.

extract_protocol: The mirVana miRNA isolation kit (Life Technologies) was used to isolate miRNAs according to the manufactor's reccomendations. RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).

treatment_protocol: Cell lines were transfected with an siRNA duplex against RBM3 at a ratio of 20 nM siRNA per 25 µl Lipofectamine RNAiMax (Life Technologies) to knockdown RBM3, or mock treated as a control; cells were harvested after 48 hrs.

value: neuroblastoma

tag: knockdown

value: control


title: ES[MC1R(20):tetSix1(15)]_day2_Dox+_rep1

description:
Six1(15)]_day2_Dox+
Raw data file:
4920-US12302333_251508710844_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: B104 control rep1


title: ES[MC1R(20):tetSfrs6(2)]_day2_Dox-_rep2

description:
Sfrs6(2)]_day2_Dox-
Raw data file:
4959-US12302333_251508710851_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSirt3(19)]_day2_Dox-_rep2

description:
Sirt3(19)]_day2_Dox-
Raw data file:
4834-US12302333_251508710822_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSirt3(19)]_day2_Dox+_rep2

description:
Sirt3(19)]_day2_Dox+
Raw data file:
4834-US12302333_251508710822_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSmad6(9)]_day2_Dox-_rep2

description:
Smad6(9)]_day2_Dox-
Raw data file:
4904-US12302333_251508710840_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSfrs6(2)]_day2_Dox-_rep1

description:
Sfrs6(2)]_day2_Dox-
Raw data file:
4957-US12302333_251508710851_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSirt3(19)]_day2_Dox+_rep1

description:
Sirt3(19)]_day2_Dox+
Raw data file:
4832-US12302333_251508710822_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tet4932441K18Rik(9)]_day2_Dox-_rep1

description:
Rik(9)]_day2_Dox-
Raw data file:
4941-US12302333_251508710847_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tet4932441K18Rik(9)]_day2_Dox+_rep2

description:
Rik(9)]_day2_Dox+
Raw data file:
4943-US12302333_251508710847_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSap30(12)]_day2_Dox+_rep1

description:
Sap30(12)]_day2_Dox+
Raw data file:
4868-US12302333_251508710832_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSfrs6(2)]_day2_Dox+_rep2

description:
Sfrs6(2)]_day2_Dox+
Raw data file:
4959-US12302333_251508710851_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetRest(19)]_day2_Dox-_rep2

description:
Rest(19)]_day2_Dox-
Raw data file:
4956-US12302333_251508710852_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.

value: Rest


title: ES[MC1R(20):tet4932441K18Rik(9)]_day2_Dox-_rep2

description:
Rik(9)]_day2_Dox-
Raw data file:
4943-US12302333_251508710847_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSap30(12)]_day2_Dox+_rep2

description:
Sap30(12)]_day2_Dox+
Raw data file:
4870-US12302333_251508710832_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: B16-F10 cells cultured in control conditions (21% oxygen), biological replica 1

description: Gene expression data from B16-F10 control cells

source_name: control B16-F10 cells


title: ES[MC1R(20):tet4932441K18Rik(9)]_day2_Dox+_rep1

description:
Rik(9)]_day2_Dox+
Raw data file:
4941-US12302333_251508710847_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSap30(12)]_day2_Dox-_rep1

description:
Sap30(12)]_day2_Dox-
Raw data file:
4868-US12302333_251508710832_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSap30(12)]_day2_Dox-_rep2

description:
Sap30(12)]_day2_Dox-
Raw data file:
4870-US12302333_251508710832_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSix1(15)]_day2_Dox+_rep2

description:
Six1(15)]_day2_Dox+
Raw data file:
4922-US12302333_251508710844_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetPrickle1(11)]_day2_Dox-_rep2

description:
Prickle1(11)]_day2_Dox-
Raw data file:
4987-US12302333_251508710859_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetRest(19)]_day2_Dox+_rep1

description:
Rest(19)]_day2_Dox+
Raw data file:
4954-US12302333_251508710852_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetPrickle1(11)]_day2_Dox-_rep1

description:
Prickle1(11)]_day2_Dox-
Raw data file:
4986-US12302333_251508710859_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetRest(19)]_day2_Dox-_rep1

description:
Rest(19)]_day2_Dox-
Raw data file:
4954-US12302333_251508710852_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetSfrs6(2)]_day2_Dox+_rep1

description:
Sfrs6(2)]_day2_Dox+
Raw data file:
4957-US12302333_251508710851_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetPrickle1(11)]_day2_Dox+_rep1

description:
Prickle1(11)]_day2_Dox+
Raw data file:
4986-US12302333_251508710859_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetPrickle1(11)]_day2_Dox+_rep2

description:
Prickle1(11)]_day2_Dox+
Raw data file:
4987-US12302333_251508710859_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetRest(19)]_day2_Dox+_rep2

description:
Rest(19)]_day2_Dox+
Raw data file:
4956-US12302333_251508710852_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetPdlim1(15)]_day2_Dox-_rep2

description:
Pdlim1(15)]_day2_Dox-
Raw data file:
4875-US12302333_251508710834_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetPdlim1(15)]_day2_Dox-_rep1

description:
Pdlim1(15)]_day2_Dox-
Raw data file:
4873-US12302333_251508710834_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetOtx1(6)]_day2_Dox-_rep2

description:
Otx1(6)]_day2_Dox-
Raw data file:
4847-US12302333_251508710825_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetPdlim1(15)]_day2_Dox+_rep2

description:
Pdlim1(15)]_day2_Dox+
Raw data file:
4875-US12302333_251508710834_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetOtx1(6)]_day2_Dox-_rep1

description:
Otx1(6)]_day2_Dox-
Raw data file:
4845-US12302333_251508710825_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetPdlim1(15)]_day2_Dox+_rep1

description:
Pdlim1(15)]_day2_Dox+
Raw data file:
4873-US12302333_251508710834_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetOstf1(15)]_day2_Dox+_rep2

description:
Ostf1(15)]_day2_Dox+
Raw data file:
4989-US12302333_251508710859_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetOstf1(15)]_day2_Dox-_rep1

description:
Ostf1(15)]_day2_Dox-
Raw data file:
4988-US12302333_251508710859_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNsbp1(6)]_day2_Dox-_rep1

description:
Nsbp1(6)]_day2_Dox-
Raw data file:
4841-US12302333_251508710825_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetOtx1(6)]_day2_Dox+_rep1

description:
Otx1(6)]_day2_Dox+
Raw data file:
4845-US12302333_251508710825_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetNupr1(17)]_day2_Dox-_rep2

description:
Nupr1(17)]_day2_Dox-
Raw data file:
4938-US12302333_251508710848_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetOstf1(15)]_day2_Dox+_rep1

description:
Ostf1(15)]_day2_Dox+
Raw data file:
4988-US12302333_251508710859_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetOtx1(6)]_day2_Dox+_rep2

description:
Otx1(6)]_day2_Dox+
Raw data file:
4847-US12302333_251508710825_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetNupr1(17)]_day2_Dox-_rep1

description:
Nupr1(17)]_day2_Dox-
Raw data file:
4936-US12302333_251508710848_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNupr1(17)]_day2_Dox+_rep1

description:
Nupr1(17)]_day2_Dox+
Raw data file:
4936-US12302333_251508710848_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetNsbp1(6)]_day2_Dox-_rep2

description:
Nsbp1(6)]_day2_Dox-
Raw data file:
4843-US12302333_251508710825_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNr2f1(14)]_day2_Dox+_rep2

description:
Nr2f1(14)]_day2_Dox+
Raw data file:
4960-US12302333_251508710852_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetNr2f1(14)]_day2_Dox-_rep1

description:
Nr2f1(14)]_day2_Dox-
Raw data file:
4958-US12302333_251508710852_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNsbp1(6)]_day2_Dox+_rep1

description:
Nsbp1(6)]_day2_Dox+
Raw data file:
4841-US12302333_251508710825_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetNupr1(17)]_day2_Dox+_rep2

description:
Nupr1(17)]_day2_Dox+
Raw data file:
4938-US12302333_251508710848_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetNr2f1(14)]_day2_Dox-_rep2

description:
Nr2f1(14)]_day2_Dox-
Raw data file:
4960-US12302333_251508710852_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNkx2-5(12)]_day2_Dox-_rep1

description:
Nkx2-5(12)]_day2_Dox-
Raw data file:
4898-US12302333_251508710838_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNkx2-5(12)]_day2_Dox-_rep2

description:
Nkx2-5(12)]_day2_Dox-
Raw data file:
4899-US12302333_251508710838_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetOstf1(15)]_day2_Dox-_rep2

description:
Ostf1(15)]_day2_Dox-
Raw data file:
4989-US12302333_251508710859_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNkx2-5(12)]_day2_Dox+_rep1

description:
Nkx2-5(12)]_day2_Dox+
Raw data file:
4898-US12302333_251508710838_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetMkrn1(15)]_day2_Dox-_rep2

description:
Mkrn1(15)]_day2_Dox-
Raw data file:
4942-US12302333_251508710848_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNr2f1(14)]_day2_Dox+_rep1

description:
Nr2f1(14)]_day2_Dox+
Raw data file:
4958-US12302333_251508710852_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetMkrn1(15)]_day2_Dox+_rep2

description:
Mkrn1(15)]_day2_Dox+
Raw data file:
4942-US12302333_251508710848_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetMkrn1(15)]_day2_Dox+_rep1

description:
Mkrn1(15)]_day2_Dox+
Raw data file:
4940-US12302333_251508710848_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetMeis2(40)]_day2_Dox-_rep2

description:
Meis2(40)]_day2_Dox-
Raw data file:
4846-US12302333_251508710824_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetMkrn1(15)]_day2_Dox-_rep1

description:
Mkrn1(15)]_day2_Dox-
Raw data file:
4940-US12302333_251508710848_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetMbd3(12)]_day2_Dox-_rep1

description:
Mbd3(12)]_day2_Dox-
Raw data file:
4876-US12302333_251508710833_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetMeis2(40)]_day2_Dox-_rep1

description:
Meis2(40)]_day2_Dox-
Raw data file:
4844-US12302333_251508710824_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetMeis2(40)]_day2_Dox+_rep2

description:
Meis2(40)]_day2_Dox+
Raw data file:
4846-US12302333_251508710824_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetLhx2(13)]_day2_Dox-_rep2

description:
Lhx2(13)]_day2_Dox-
Raw data file:
5009-US12302333_251508710864_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetKlf9(23)]_day2_Dox+_rep2

description:
Klf9(23)]_day2_Dox+
Raw data file:
4947-US12302333_251508710850_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetLhx2(13)]_day2_Dox-_rep1

description:
Lhx2(13)]_day2_Dox-
Raw data file:
5007-US12302333_251508710864_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetMeis2(40)]_day2_Dox+_rep1

description:
Meis2(40)]_day2_Dox+
Raw data file:
4844-US12302333_251508710824_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetLhx2(13)]_day2_Dox+_rep2

description:
Lhx2(13)]_day2_Dox+
Raw data file:
5009-US12302333_251508710864_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetMbd3(12)]_day2_Dox+_rep1

description:
Mbd3(12)]_day2_Dox+
Raw data file:
4876-US12302333_251508710833_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetKlf3(11)]_day2_Dox-_rep2

description:
Klf3(11)]_day2_Dox-
Raw data file:
4939-US12302333_251508710847_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetKlf9(23)]_day2_Dox-_rep1

description:
Klf9(23)]_day2_Dox-
Raw data file:
4945-US12302333_251508710850_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetLhx2(13)]_day2_Dox+_rep1

description:
Lhx2(13)]_day2_Dox+
Raw data file:
5007-US12302333_251508710864_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetMbd3(12)]_day2_Dox-_rep2

description:
Mbd3(12)]_day2_Dox-
Raw data file:
4878-US12302333_251508710833_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNkx2-5(12)]_day2_Dox+_rep2

description:
Nkx2-5(12)]_day2_Dox+
Raw data file:
4899-US12302333_251508710838_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetLass2(12)]_day2_Dox-_rep1

description:
Lass2(12)]_day2_Dox-
Raw data file:
4991-US12302333_251508710861_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetMbd3(12)]_day2_Dox+_rep2

description:
Mbd3(12)]_day2_Dox+
Raw data file:
4878-US12302333_251508710833_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetLass2(12)]_day2_Dox-_rep2

description:
Lass2(12)]_day2_Dox-
Raw data file:
4993-US12302333_251508710861_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetLass2(12)]_day2_Dox+_rep2

description:
Lass2(12)]_day2_Dox+
Raw data file:
4993-US12302333_251508710861_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetKlf9(23)]_day2_Dox-_rep2

description:
Klf9(23)]_day2_Dox-
Raw data file:
4947-US12302333_251508710850_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetKlf9(23)]_day2_Dox+_rep1

description:
Klf9(23)]_day2_Dox+
Raw data file:
4945-US12302333_251508710850_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetLass2(12)]_day2_Dox+_rep1

description:
Lass2(12)]_day2_Dox+
Raw data file:
4991-US12302333_251508710861_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetKlf3(11)]_day2_Dox+_rep2

description:
Klf3(11)]_day2_Dox+
Raw data file:
4939-US12302333_251508710847_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetKlf3(11)]_day2_Dox-_rep1

description:
Klf3(11)]_day2_Dox-
Raw data file:
4937-US12302333_251508710847_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetKlf3(11)]_day2_Dox+_rep1

description:
Klf3(11)]_day2_Dox+
Raw data file:
4937-US12302333_251508710847_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetSmad6(9)]_day2_Dox-_rep1

description:
Smad6(9)]_day2_Dox-
Raw data file:
4902-US12302333_251508710840_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetJun(4)]_day2_Dox-_rep2

description:
Jun(4)]_day2_Dox-
Raw data file:
4905-US12302333_251508710839_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.

value: Jun


title: ES[MC1R(20):tetJun(4)]_day2_Dox+_rep1

description:
Jun(4)]_day2_Dox+
Raw data file:
4903-US12302333_251508710839_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetJarid1a(21)]_day2_Dox-_rep1

description:
Jarid1a(21)]_day2_Dox-
Raw data file:
4911-US12302333_251508710842_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetJun(4)]_day2_Dox-_rep1

description:
Jun(4)]_day2_Dox-
Raw data file:
4903-US12302333_251508710839_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetJarid1a(21)]_day2_Dox+_rep1

description:
Jarid1a(21)]_day2_Dox+
Raw data file:
4911-US12302333_251508710842_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetJarid1a(21)]_day2_Dox+_rep2

description:
Jarid1a(21)]_day2_Dox+
Raw data file:
4913-US12302333_251508710842_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetIrf2(7)]_day2_Dox-_rep2

description:
Irf2(7)]_day2_Dox-
Raw data file:
4935-US12302333_251508710846_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetJarid1a(21)]_day2_Dox-_rep2

description:
Jarid1a(21)]_day2_Dox-
Raw data file:
4913-US12302333_251508710842_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetId3(18)]_day2_Dox-_rep2

description:
Id3(18)]_day2_Dox-
Raw data file:
4997-US12302333_251508710861_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHsf2bp(10)]_day2_Dox-_rep2

description:
Hsfbp2(10)]_day2_Dox-
Raw data file:
4973-US12302333_251508710856_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetIrf2(7)]_day2_Dox+_rep2

description:
Irf2(7)]_day2_Dox+
Raw data file:
4935-US12302333_251508710846_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetIrf2(7)]_day2_Dox+_rep1

description:
Irf2(7)]_day2_Dox+
Raw data file:
4933-US12302333_251508710846_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetId3(18)]_day2_Dox+_rep1

description:
Id3(18)]_day2_Dox+
Raw data file:
4995-US12302333_251508710861_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetInppl1(21)]_day2_Dox-_rep2

description:
Inppl1(21)]_day2_Dox-
Raw data file:
4912-US12302333_251508710841_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetInppl1(21)]_day2_Dox+_rep1

description:
Inppl1(21)]_day2_Dox+
Raw data file:
4910-US12302333_251508710841_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetInppl1(21)]_day2_Dox+_rep2

description:
Inppl1(21)]_day2_Dox+
Raw data file:
4912-US12302333_251508710841_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetIrf2(7)]_day2_Dox-_rep1

description:
Irf2(7)]_day2_Dox-
Raw data file:
4933-US12302333_251508710846_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetId3(18)]_day2_Dox-_rep1

description:
Id3(18)]_day2_Dox-
Raw data file:
4995-US12302333_251508710861_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetJun(4)]_day2_Dox+_rep2

description:
Jun(4)]_day2_Dox+
Raw data file:
4905-US12302333_251508710839_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHoxa9(19)]_day2_Dox-_rep1

description:
Hoxa9(19)]_day2_Dox-
Raw data file:
5014-US12302333_251508710867_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHoxa9(19)]_day2_Dox+_rep2

description:
Hoxa9(19)]_day2_Dox+
Raw data file:
4897-US12302333_251508710837_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHoxa9(19)]_day2_Dox+_rep1

description:
Hoxa9(19)]_day2_Dox+
Raw data file:
5014-US12302333_251508710867_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetInppl1(21)]_day2_Dox-_rep1

description:
Inppl1(21)]_day2_Dox-
Raw data file:
4910-US12302333_251508710841_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHsf2bp(10)]_day2_Dox-_rep1

description:
Hsfbp2(10)]_day2_Dox-
Raw data file:
4971-US12302333_251508710856_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHsf2bp(10)]_day2_Dox+_rep2

description:
Hsfbp2(10)]_day2_Dox+
Raw data file:
4973-US12302333_251508710856_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHoxa2(12)]_day2_Dox-_rep2

description:
Hoxa2(12)]_day2_Dox-
Raw data file:
4874-US12302333_251508710833_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHoxa9(19)]_day2_Dox-_rep2

description:
Hoxa9(19)]_day2_Dox-
Raw data file:
4897-US12302333_251508710837_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetId3(18)]_day2_Dox+_rep2

description:
Id3(18)]_day2_Dox+
Raw data file:
4997-US12302333_251508710861_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHsf2bp(10)]_day2_Dox+_rep1

description:
Hsfbp2(10)]_day2_Dox+
Raw data file:
4971-US12302333_251508710856_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHoxa2(12)]_day2_Dox-_rep1

description:
Hoxa2(12)]_day2_Dox-
Raw data file:
4872-US12302333_251508710833_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHoxa2(12)]_day2_Dox+_rep1

description:
Hoxa2(12)]_day2_Dox+
Raw data file:
4872-US12302333_251508710833_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHnf4a(1)]_day2_Dox+_rep1

description:
Hnf4a(1)]_day2_Dox+
Raw data file:
4837-US12302333_251508710823_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHnf4a(1)]_day2_Dox+_rep2

description:
Hnf4a(1)]_day2_Dox+
Raw data file:
4839-US12302333_251508710823_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHnf4a(1)]_day2_Dox-_rep2

description:
Hnf4a(1)]_day2_Dox-
Raw data file:
4839-US12302333_251508710823_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHmga2(18)]_day2_Dox-_rep2

description:
Hmga2(18)]_day2_Dox-
Raw data file:
4962-US12302333_251508710853_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHmga2(18)]_day2_Dox+_rep2

description:
Hmga2(18)]_day2_Dox+
Raw data file:
4962-US12302333_251508710853_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHoxa2(12)]_day2_Dox+_rep2

description:
Hoxa2(12)]_day2_Dox+
Raw data file:
4874-US12302333_251508710833_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHnf4a(1)]_day2_Dox-_rep1

description:
Hnf4a(1)]_day2_Dox-
Raw data file:
4837-US12302333_251508710823_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHmga2(18)]_day2_Dox-_rep1

description:
Hmga2(18)]_day2_Dox-
Raw data file:
4961-US12302333_251508710853_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHesx1(8)]_day2_Dox+_rep1

description:
Hesx1(8)]_day2_Dox+
Raw data file:
4864-US12302333_251508710832_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetGrhl2(22)]_day2_Dox+_rep1

description:
Grhl2(22)]_day2_Dox+
Raw data file:
4921-US12302333_251508710843_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetGrhl2(22)]_day2_Dox+_rep2

description:
Grhl2(22)]_day2_Dox+
Raw data file:
4923-US12302333_251508710843_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetHmga2(18)]_day2_Dox+_rep1

description:
Hmga2(18)]_day2_Dox+
Raw data file:
4961-US12302333_251508710853_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetGbx2(8)]_day2_Dox-_rep2

description:
Gbx2(8)]_day2_Dox-
Raw data file:
4977-US12302333_251508710856_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetGrhl2(22)]_day2_Dox-_rep1

description:
Grhl2(22)]_day2_Dox-
Raw data file:
4921-US12302333_251508710843_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHesx1(8)]_day2_Dox-_rep2

description:
Hesx1(8)]_day2_Dox-
Raw data file:
4866-US12302333_251508710832_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetGrhl2(22)]_day2_Dox-_rep2

description:
Grhl2(22)]_day2_Dox-
Raw data file:
4923-US12302333_251508710843_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHesx1(8)]_day2_Dox-_rep1

description:
Hesx1(8)]_day2_Dox-
Raw data file:
4864-US12302333_251508710832_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetHesx1(8)]_day2_Dox+_rep2

description:
Hesx1(8)]_day2_Dox+
Raw data file:
4866-US12302333_251508710832_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetGbx2(8)]_day2_Dox+_rep2

description:
Gbx2(8)]_day2_Dox+
Raw data file:
4977-US12302333_251508710856_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetGata2(7)]_day2_Dox-_rep2

description:
Gata2(7)]_day2_Dox-
Raw data file:
4926-US12302333_251508710844_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetGbx2(8)]_day2_Dox+_rep1

description:
Gbx2(8)]_day2_Dox+
Raw data file:
4975-US12302333_251508710856_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetGata2(7)]_day2_Dox-_rep1

description:
Gata2(7)]_day2_Dox-
Raw data file:
4924-US12302333_251508710844_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetNsbp1(6)]_day2_Dox+_rep2

description:
Nsbp1(6)]_day2_Dox+
Raw data file:
4843-US12302333_251508710825_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetGata2(7)]_day2_Dox+_rep1

description:
Gata2(7)]_day2_Dox+
Raw data file:
4924-US12302333_251508710844_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxp3(12)]_day2_Dox-_rep2

description:
Foxp3(12)]_day2_Dox-
Raw data file:
4859-US12302333_251508710829_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetGbx2(8)]_day2_Dox-_rep1

description:
Gbx2(8)]_day2_Dox-
Raw data file:
4975-US12302333_251508710856_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetGata2(7)]_day2_Dox+_rep2

description:
Gata2(7)]_day2_Dox+
Raw data file:
4926-US12302333_251508710844_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxp3(12)]_day2_Dox-_rep1

description:
Foxp3(12)]_day2_Dox-
Raw data file:
4857-US12302333_251508710829_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxp3(12)]_day2_Dox+_rep1

description:
Foxp3(12)]_day2_Dox+
Raw data file:
4857-US12302333_251508710829_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxl2(15)]_day2_Dox-_rep1

description:
Foxl2(15)]_day2_Dox-
Raw data file:
4840-US12302333_251508710824_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxp3(12)]_day2_Dox+_rep2

description:
Foxp3(12)]_day2_Dox+
Raw data file:
4859-US12302333_251508710829_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxl2(15)]_day2_Dox-_rep2

description:
Foxl2(15)]_day2_Dox-
Raw data file:
4842-US12302333_251508710824_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxl2(15)]_day2_Dox+_rep2

description:
Foxl2(15)]_day2_Dox+
Raw data file:
4842-US12302333_251508710824_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 62

city: Durham

first: Thomas

middle: L.

last: Ortel

state: NC

address: Box 3422 DUMC

department: Hematology

institute: Duke University Medical Center

hyb_protocol: 20 ug of antisense cRNA was hybridized for 16+ hr at 45C on GeneChip Human U133A 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using the Midi_euk2v3_450 protocol

scan_protocol: GeneChips were scanned using the Affymetrix GeneArray Scanner 3000 7G

data_processing: A comprehensive quality control process was performed on all arrays using Bioconductor.  In addition to evaluating the standard quality control measures provided by Affymetrix, a series of graphical illustrations (e.g. boxplots of perfect match intensities, density histograms, raw and corrected chip images, MA plots, median absolute deviation plots, and multidimensional scaling plots) were produced and evaluated.  Also, residual plots from probe-linear models were used to identify blemishes and defects on each chip.  The expressions from the arrays were normalized using Robust Multichip Averaging pre-processing algorithm, and log (base 2) transformed (RMAExpress Version: 1.0 Release).

organism: Homo sapiens

source_name: blood_healthy control

label_protocol: Biotinylated antisense strand cRNA was prepared according to the standard Affymetrix protocol from 2.5 ug total RNA utilizing peptide nucleic acids complimentary to globin mRNA to block amplification of those transcripts(GeneChip® 1 cycle labeling kit with Globin Reduction protocol (Affymetrix) Data was Generated at Expression Analysis, Inc (Durham, NC))

extract_protocol: Total RNA was extract from Paxgene Blood RNA tubes using the PAXgene Blood RNA Kit per the manufacturer's protocol.

tag: race

value: caucasian

tag: age


title: blood_healthy control 61


title: ES[MC1R(20):tetFoxg1(8)]_day2_Dox-_rep2

description:
Foxg1(8)]_day2_Dox-
Raw data file:
4855-US12302333_251508710829_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxl2(15)]_day2_Dox+_rep1

description:
Foxl2(15)]_day2_Dox+
Raw data file:
4840-US12302333_251508710824_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxg1(8)]_day2_Dox-_rep1

description:
Foxg1(8)]_day2_Dox-
Raw data file:
4853-US12302333_251508710829_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: blood_healthy control 63


title: ES[MC1R(20):tetFoxc1(18)]_day2_Dox+_rep1

description:
Foxc1(18)]_day2_Dox+
Raw data file:
4906-US12302333_251508710840_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxg1(8)]_day2_Dox+_rep2

description:
Foxg1(8)]_day2_Dox+
Raw data file:
4855-US12302333_251508710829_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxc1(18)]_day2_Dox+_rep2

description:
Foxc1(18)]_day2_Dox+
Raw data file:
4908-US12302333_251508710840_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 59

value: female


title: blood_healthy control 60


title: blood_healthy control 58

value: african american


title: ES[MC1R(20):tetFoxg1(8)]_day2_Dox+_rep1

description:
Foxg1(8)]_day2_Dox+
Raw data file:
4853-US12302333_251508710829_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxa1(36)]_day2_Dox-_rep2

description:
Foxa1(36)]_day2_Dox-
Raw data file:
5008-US12302333_251508710865_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxc1(18)]_day2_Dox-_rep1

description:
Foxc1(18)]_day2_Dox-
Raw data file:
4906-US12302333_251508710840_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 68

source_name: blood_patient_recurrent VTE


title: blood_healthy control 55


title: ES[MC1R(20):tetFoxc1(18)]_day2_Dox-_rep2

description:
Foxc1(18)]_day2_Dox-
Raw data file:
4908-US12302333_251508710840_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 69

source_name: blood_patient_single VTE


title: blood_patient 67

value: Female


title: blood_patient 66


title: blood_patient 64


title: ES[MC1R(20):tetFoxa1(36)]_day2_Dox+_rep2

description:
Foxa1(36)]_day2_Dox+
Raw data file:
5008-US12302333_251508710865_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 63


title: ES[MC1R(20):tetFoxa1(36)]_day2_Dox-_rep1

description:
Foxa1(36)]_day2_Dox-
Raw data file:
5006-US12302333_251508710865_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 62


title: ES[MC1R(20):tetFosl2(1)]_day2_Dox-_rep2

description:
Fosl2(1)]_day2_Dox-
Raw data file:
4927-US12302333_251508710843_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetFosl2(1)]_day2_Dox+_rep1

description:
Fosl2(1)]_day2_Dox+
Raw data file:
4925-US12302333_251508710843_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFoxa1(36)]_day2_Dox+_rep1

description:
Foxa1(36)]_day2_Dox+
Raw data file:
5006-US12302333_251508710865_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 70


title: ES[MC1R(20):tetFhl2(7)]_day2_Dox-_rep2

description:
Fhl2(7)]_day2_Dox-
Raw data file:
4996-US12302333_251508710860_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 60


title: ES[MC1R(20):tetFosl2(1)]_day2_Dox+_rep2

description:
Fosl2(1)]_day2_Dox+
Raw data file:
4927-US12302333_251508710843_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 65


title: ES[MC1R(20):tetFhl2(7)]_day2_Dox-_rep1

description:
Fhl2(7)]_day2_Dox-
Raw data file:
4994-US12302333_251508710860_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 56


title: blood_patient 57


title: ES[MC1R(20):tetFhl2(7)]_day2_Dox+_rep2

description:
Fhl2(7)]_day2_Dox+
Raw data file:
4996-US12302333_251508710860_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFosl2(1)]_day2_Dox-_rep1

description:
Fosl2(1)]_day2_Dox-
Raw data file:
4925-US12302333_251508710843_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 58


title: blood_patient 61


title: blood_patient 59


title: blood_patient 55


title: blood_patient 54


title: ES[MC1R(20):tetFhl2(7)]_day2_Dox+_rep1

description:
Fhl2(7)]_day2_Dox+
Raw data file:
4994-US12302333_251508710860_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFgfbp1(2)]_day2_Dox-_rep2

description:
Fgfbp1(2)]_day2_Dox-
Raw data file:
5000-US12302333_251508710862_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 52


title: ES[MC1R(20):tetFgfbp1(2)]_day2_Dox+_rep2

description:
Fgfbp1(2)]_day2_Dox+
Raw data file:
5000-US12302333_251508710862_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFgfbp1(2)]_day2_Dox-_rep1

description:
Fgfbp1(2)]_day2_Dox-
Raw data file:
4998-US12302333_251508710862_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetFgfbp1(2)]_day2_Dox+_rep1

description:
Fgfbp1(2)]_day2_Dox+
Raw data file:
4998-US12302333_251508710862_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 51


title: blood_patient 50


title: ES[MC1R(20):tetFbxo15(14)]_day2_Dox-_rep2

description:
Fbxo15(14)]_day2_Dox-
Raw data file:
4976-US12302333_251508710855_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 49


title: blood_patient 53


title: blood_patient 47


title: blood_patient 48


title: blood_patient 46


title: blood_patient 45


title: ES[MC1R(20):tetEtv1(15)]_day2_Dox+_rep2

description:
Etv1(15)]_day2_Dox+
Raw data file:
4871-US12302333_251508710830_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 44


title: ES[MC1R(20):tetEtv1(15)]_day2_Dox-_rep2

description:
Etv1(15)]_day2_Dox-
Raw data file:
4871-US12302333_251508710830_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetFbxo15(14)]_day2_Dox+_rep2

description:
Fbxo15(14)]_day2_Dox+
Raw data file:
4976-US12302333_251508710855_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 42


title: ES[MC1R(20):tetFbxo15(14)]_day2_Dox+_rep1

description:
Fbxo15(14)]_day2_Dox+
Raw data file:
4974-US12302333_251508710855_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 43


title: ES[MC1R(20):tetEtv1(15)]_day2_Dox-_rep1

description:
Etv1(15)]_day2_Dox-
Raw data file:
4869-US12302333_251508710830_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetEtv1(15)]_day2_Dox+_rep1

description:
Etv1(15)]_day2_Dox+
Raw data file:
4869-US12302333_251508710830_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetFbxo15(14)]_day2_Dox-_rep1

description:
Fbxo15(14)]_day2_Dox-
Raw data file:
4974-US12302333_251508710855_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 41


title: ES[MC1R(20):tetEts1(6)]_day2_Dox-_rep2

description:
Ets1(6)]_day2_Dox-
Raw data file:
4950-US12302333_251508710849_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetEts1(6)]_day2_Dox-_rep1

description:
Ets1(6)]_day2_Dox-
Raw data file:
4948-US12302333_251508710849_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 40


title: ES[MC1R(20):tetEts1(6)]_day2_Dox+_rep1

description:
Ets1(6)]_day2_Dox+
Raw data file:
4948-US12302333_251508710849_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetEts1(6)]_day2_Dox+_rep2

description:
Ets1(6)]_day2_Dox+
Raw data file:
4950-US12302333_251508710849_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 39


title: blood_patient 37


title: ES[MC1R(20):tetEll2(38)]_day2_Dox-_rep2

description:
Ell2(38)]_day2_Dox-
Raw data file:
4981-US12302333_251508710858_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 38


title: blood_patient 31


title: blood_patient 34


title: ES[MC1R(20):tetEll2(38)]_day2_Dox+_rep2

description:
Ell2(38)]_day2_Dox+
Raw data file:
4981-US12302333_251508710858_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 29


title: blood_healthy control 56


title: blood_patient 36


title: blood_patient 25


title: blood_patient 33


title: blood_patient 30


title: blood_patient 26


title: ES[MC1R(20):tetEll2(38)]_day2_Dox-_rep1

description:
Ell2(38)]_day2_Dox-
Raw data file:
4979-US12302333_251508710858_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetDppa3(7)]_day2_Dox-_rep2

description:
Dppa3(7)]_day2_Dox-
Raw data file:
4931-US12302333_251508710846_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetElf5(18)]_day2_Dox+_rep2

description:
Elf5(18)]_day2_Dox+
Raw data file:
4831-US12302333_251508710820_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 57


title: ES[MC1R(20):tetEll2(38)]_day2_Dox+_rep1

description:
Ell2(38)]_day2_Dox+
Raw data file:
4979-US12302333_251508710858_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetDmrt1(21)]_day2_Dox-_rep1

description:
Dmrt1(21)]_day2_Dox-
Raw data file:
4915-US12302333_251508710842_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 32


title: ES[MC1R(20):tetElf5(18)]_day2_Dox+_rep1

description:
Elf5(18)]_day2_Dox+
Raw data file:
4829-US12302333_251508710820_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 54


title: ES[MC1R(20):tetDppa3(7)]_day2_Dox+_rep2

description:
Dppa3(7)]_day2_Dox+
Raw data file:
4931-US12302333_251508710846_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 35


title: ES[MC1R(20):tetDppa3(7)]_day2_Dox+_rep1

description:
Dppa3(7)]_day2_Dox+
Raw data file:
4930-US12302333_251508710846_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetElf5(18)]_day2_Dox-_rep1

description:
Elf5(18)]_day2_Dox-
Raw data file:
4829-US12302333_251508710820_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 28


title: ES[MC1R(20):tetElf5(18)]_day2_Dox-_rep2

description:
Elf5(18)]_day2_Dox-
Raw data file:
4831-US12302333_251508710820_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 24


title: ES[MC1R(20):tetDmrt1(21)]_day2_Dox-_rep2

description:
Dmrt1(21)]_day2_Dox-
Raw data file:
4917-US12302333_251508710842_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 27


title: blood_patient 23


title: ES[MC1R(20):tetDppa3(7)]_day2_Dox-_rep1

description:
Dppa3(7)]_day2_Dox-
Raw data file:
4930-US12302333_251508710846_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetDedd2(23)]_day2_Dox-_rep1

description:
Dedd2(23)]_day2_Dox-
Raw data file:
5003-US12302333_251508710863_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetDmrt1(21)]_day2_Dox+_rep1

description:
Dmrt1(21)]_day2_Dox+
Raw data file:
4915-US12302333_251508710842_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 22


title: ES[MC1R(20):tetDedd2(23)]_day2_Dox+_rep2

description:
Dedd2(23)]_day2_Dox+
Raw data file:
5005-US12302333_251508710863_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetDedd2(23)]_day2_Dox+_rep1

description:
Dedd2(23)]_day2_Dox+
Raw data file:
5003-US12302333_251508710863_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 21


title: blood_patient 19


title: ES[MC1R(20):tetDedd2(23)]_day2_Dox-_rep2

description:
Dedd2(23)]_day2_Dox-
Raw data file:
5005-US12302333_251508710863_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetChes1(2)]_day2_Dox-_rep2

description:
Ches1(2)]_day2_Dox-
Raw data file:
4916-US12302333_251508710841_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetDmrt1(21)]_day2_Dox+_rep2

description:
Dmrt1(21)]_day2_Dox+
Raw data file:
4917-US12302333_251508710842_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetCdyl2(24)]_day2_Dox-_rep2

description:
Cdyl2(24)]_day2_Dox-
Raw data file:
4867-US12302333_251508710830_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetCdyl2(24)]_day2_Dox-_rep1

description:
Cdyl2(24)]_day2_Dox-
Raw data file:
4865-US12302333_251508710830_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 17


title: ES[MC1R(20):tetChes1(2)]_day2_Dox+_rep1

description:
Ches1(2)]_day2_Dox+
Raw data file:
4914-US12302333_251508710841_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetChes1(2)]_day2_Dox-_rep1

description:
Ches1(2)]_day2_Dox-
Raw data file:
4914-US12302333_251508710841_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetChes1(2)]_day2_Dox+_rep2

description:
Ches1(2)]_day2_Dox+
Raw data file:
4916-US12302333_251508710841_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 11


title: blood_patient 20


title: blood_patient 13


title: blood_patient 15


title: blood_patient 18


title: blood_patient 16


title: ES[MC1R(20):tetCdyl(12)]_day2_Dox-_rep2

description:
Cdyl(12)]_day2_Dox-
Raw data file:
4901-US12302333_251508710838_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.

value: Cdyl


title: blood_patient 12


title: blood_patient 10


title: ES[MC1R(20):tetCdyl(12)]_day2_Dox+_rep1

description:
Cdyl(12)]_day2_Dox+
Raw data file:
4900-US12302333_251508710838_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.

value: Embryonic Stem Cells


title: ES[MC1R(20):tetCdyl(12)]_day2_Dox-_rep1

description:
Cdyl(12)]_day2_Dox-
Raw data file:
4900-US12302333_251508710838_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.

value: male


title: blood_patient 9


title: blood_patient 14


title: ES[MC1R(20):tetCdyl2(24)]_day2_Dox+_rep2

description:
Cdyl2(24)]_day2_Dox+
Raw data file:
4867-US12302333_251508710830_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetCdyl2(24)]_day2_Dox+_rep1

description:
Cdyl2(24)]_day2_Dox+
Raw data file:
4865-US12302333_251508710830_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetCdyl(12)]_day2_Dox+_rep2

description:
Cdyl(12)]_day2_Dox+
Raw data file:
4901-US12302333_251508710838_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetBcl6(32)]_day2_Dox-_rep1

description:
Bcl6(32)]_day2_Dox-
Raw data file:
4825-US12302333_251508710820_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.

value: Dox-


title: ES[MC1R(20):tetBcl6(32)]_day2_Dox-_rep2

description:
Bcl6(32)]_day2_Dox-
Raw data file:
4826-US12302333_251508710820_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.

value: embryo


title: ES[MC1R(20):tetBcl6(32)]_day2_Dox+_rep2

description:
Bcl6(32)]_day2_Dox+
Raw data file:
4826-US12302333_251508710820_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 2


title: ES[MC1R(20):tetBcl6(32)]_day2_Dox+_rep1

description:
Bcl6(32)]_day2_Dox+
Raw data file:
4825-US12302333_251508710820_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: blood_patient 6


title: ES[MC1R(20):tetBatf3(35)]_day2_Dox-_rep2

description:
Batf3(35)]_day2_Dox-
Raw data file:
4879-US12302333_251508710834_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 7


title: blood_patient 3


title: ES[MC1R(20):tetBatf3(35)]_day2_Dox-_rep1

description:
Batf3(35)]_day2_Dox-
Raw data file:
4877-US12302333_251508710834_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_patient 8


title: blood_patient 1


title: blood_patient 4


title: ES[MC1R(20):tetBatf3(35)]_day2_Dox+_rep2

description:
Batf3(35)]_day2_Dox+
Raw data file:
4879-US12302333_251508710834_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 52

value: Male

value: Caucasian/White


title: blood_healthy control 53


title: blood_healthy control 49


title: blood_healthy control 51


title: blood_healthy control 48


title: blood_patient 5


title: ES[MC1R(20):tetBatf3(35)]_day2_Dox+_rep1

description:
Batf3(35)]_day2_Dox+
Raw data file:
4877-US12302333_251508710834_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 47


title: ES[MC1R(20):tetAtxn1(20)]_day2_Dox-_rep1

description:
Atxn1(20)]_day2_Dox-
Raw data file:
4932-US12302333_251508710845_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_healthy control 50


title: ES[MC1R(20):tetAsh2L(6)]_day2_Dox-_rep1

description:
Ash2L(6)]_day2_Dox-
Raw data file:
4967-US12302333_251508710854_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetAtxn1(20)]_day2_Dox-_rep2

description:
Atxn1(20)]_day2_Dox-
Raw data file:
4934-US12302333_251508710845_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetAsh2L(6)]_day2_Dox+_rep2

description:
Ash2L(6)]_day2_Dox+
Raw data file:
4968-US12302333_251508710854_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 45


title: ES[MC1R(20):tetAsh2L(6)]_day2_Dox-_rep2

description:
Ash2L(6)]_day2_Dox-
Raw data file:
4968-US12302333_251508710854_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetArnt2(26)]_day2_Dox-_rep2

description:
Arnt2(26)]_day2_Dox-
Raw data file:
4835-US12302333_251508710823_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetAsh2L(6)]_day2_Dox+_rep1

description:
Ash2L(6)]_day2_Dox+
Raw data file:
4967-US12302333_251508710854_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetArnt2(26)]_day2_Dox+_rep1

description:
Arnt2(26)]_day2_Dox+
Raw data file:
4833-US12302333_251508710823_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetAtxn1(20)]_day2_Dox+_rep1

description:
Atxn1(20)]_day2_Dox+
Raw data file:
4932-US12302333_251508710845_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 42


title: ES[MC1R(20):tetAtxn1(20)]_day2_Dox+_rep2

description:
Atxn1(20)]_day2_Dox+
Raw data file:
4934-US12302333_251508710845_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 41


title: ES[MC1R(20):tetArnt2(26)]_day2_Dox-_rep1

description:
Arnt2(26)]_day2_Dox-
Raw data file:
4833-US12302333_251508710823_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: blood_healthy control 46


title: blood_healthy control 44

value: Mixed Ethnicity


title: ES[MC1R(20):tetArnt2(26)]_day2_Dox+_rep2

description:
Arnt2(26)]_day2_Dox+
Raw data file:
4835-US12302333_251508710823_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetAnkrd22(9)]_day2_Dox-_rep2

description:
Ankrd22(9)]_day2_Dox-
Raw data file:
5015-US12302333_251508710867_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch1 in dual channel hybridzation.


title: blood_healthy control 40


title: ES[MC1R(20):tetAnkrd22(9)]_day2_Dox-_rep1

description:
Ankrd22(9)]_day2_Dox-
Raw data file:
4944-US12302333_251508710849_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch1 in dual channel hybridzation.


title: ES[MC1R(20):tetAnkrd22(9)]_day2_Dox+_rep2

description:
Ankrd22(9)]_day2_Dox+
Raw data file:
5015-US12302333_251508710867_S01_GE2-v5_95_Feb07_1_2.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 43


title: blood_healthy control 36


title: blood_healthy control 38


title: blood_healthy control 39

value: Black/Africa Origin


title: ES[MC1R(20):tetAnkrd22(9)]_day2_Dox+_rep1

description:
Ankrd22(9)]_day2_Dox+
Raw data file:
4944-US12302333_251508710849_S01_GE2-v5_95_Feb07_1_1.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetAff1(9)]_day2_Dox-_rep1

description:
Aff1(9)]_day2_Dox-
Raw data file:
4949-US12302333_251508710850_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch1 in dual channel hybridzation.


title: blood_healthy control 37


title: ES[MC1R(20):tetAff1(9)]_day2_Dox+_rep1

description:
Aff1(9)]_day2_Dox+
Raw data file:
4949-US12302333_251508710850_S01_GE2-v5_95_Feb07_1_3.txt
Represents ch2 in dual channel hybridzation.


title: blood_healthy control 30

value: Hispanic or Latino


title: ES[MC1R(20):tetTbx3(15)]_day2_Dox-_rep2

hyb_protocol: Slides were hybridized according to the manufacturer's protocol (Two-Color Microarray-Based Genr Expression Analysis Protocol,  Product # G4140-90050, Version 5.0.1, August 2006).

data_processing:
Data are extracted with Agilent Feature Extraction Software. The data were further processed with NIA ANOVA tool utilities. See http://lgsun.grc.nia.nih.gov/ANOVA for details.

The data is normalized with the following method:
(1) Take values from the columns gDyeNormSignal,rDyeNormSignal in the raw files and log-transform them using: log10(max(x,10)). These values will be referenced below as Xgi and Xri where i is array number.
(2) Take average of Xri's for the oligo among 28 arrays in the series:  AverXr = average(Xri).
(3) For each array estimate Yi = Xgi-Xri+AverXr (adjust to UMR)
(4) Remove outliers. Each cell/treatment type (CTT) is characterized by 2 replications, all are log-transformed (log10). Here we check if any of these values is an outlier.
First we estimate the average square difference (ASD) between replication pairs:
ASD = SUM[(x(i,1)-x(i,2))^2]/N/2
where x(i,j) is logintensities for i-th CTT and replication j, N = number of CTT. Then we estimate z-value for each CTT:  z =  (x(i,1)-x(i,2))/sqrt(ASD). If abs(z) > 4 then one of the replications is an outlier. The value that is farther away from the median expression value is considered an outlier and it is replaced with the value from another replication.
The result is used as the normalized VALUE.
More detailed information with error correction can be found at http://lgsun.grc.nia.nih.gov/ANOVA/help.html#arrayjoin

extract_protocol: The samples were dissolved in the well with TRIzol reagent 1/2 mL.  They were then transferred to Phase Lock Gel Heavy tubes (eppendorf) and 0.2 volumes of chloroform (Sigma-Aldrich) was added to each sample.  They were mixed by hand and allowed to stand for 2-5 min at room temperature. The samples were then separated by centrifugation for 5 minutes at 15,300 rpm on an eppendorf centrifuge at 4C. The aqeous phase was transferred to another eppendorf tube, and 0.8 volumes of ice-cold isopropanol was added. They were allowed to incubate  for a minimum of 10 minutes at room temperature. If longer, they were placed at 4C. The sample was centrifuged again at the same conditions for 15 minutes. After centrifugation, the liquid was dumped out of the tubes and the pellet was washed with 1 mL of ice-cold 70% ethanol. The tube was spun  for 5 minutes, then the ethanol was dumped out.  Excess was removed with a pipette and the pellet was allowed to air dry until no liquid remained, but no longer.  ddH2O was then added in the appropriate volume, the sample was allowed to dissolve for 5 minutes at 55C and then transferred to -80C for storage.

treatment_protocol: Day 2: Cells were plated in regular ES medium with Doxycycline (0.2ug/ml) and Puromycin (1.5ug/ml). Approximately 18 hours after plating, the cells were rinsed once with PBS, then the medium was replaced with warmed medium without Doxycycline. Three hours after the first medium change, the medium was changed again. Finally, at three hours after the second medium change, the medium was replaced for a final time.  Thereafter, the medium was changed daily.  At 48 hours after the final wash, the cells were harvested in Trizol. There was no medium change on the day of RNA harvest.

value: embryonic stem cells

tag: developmental stage

source_name: Universal Mouse Reference + 129ES Cell RNA

extract_protocol: Total RNA was extracted from cultured cells using a Stratagene Absolutely RNA kit. DNase-treated total RNA samples from 11 cultured cell lines derived from embryo, embryo fibroblast, kidney, liver/hepatocyte, lung/alveolar macrophage, B-lymphocyte, T-lymphocyte (thymus), mammary gland, muscle myoblast, skin, and testis were pooled in equal parts. The resulting URM RNA was mixed with 129ES cell RNA (Lif+) at 2:1 ratio and 2.5ug of mixed RNA was used for labeling in each tube

tag: sample type

value: reference


title: ES[MC1R(20):tetAff1(9)]_day2_Dox-_rep2

description:
Aff1(9)]_day2_Dox-
Raw data file:
4951-US12302333_251508710850_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch1 in dual channel hybridzation.

tag: transcription factor


title: blood_healthy control 32

value: not available


title: blood_healthy control 34


title: ES[MC1R(20):tetTbx3(15)]_day2_Dox+_rep1

treatment_protocol: Day 2: Cells were plated in regular ES medium with Doxycycline (0.2ug/ml) and Puromycin (1.5ug/ml). Approximately 18 hours after plating, the cells were rinsed once with PBS, then the medium was replaced with warmed medium with Doxycycline. Three hours after the first medium change, the medium was changed again. Finally, at three hours after the second medium change, the medium was replaced for a final time.  Thereafter, the medium was changed daily.  At 48 hours after the final wash, the cells were harvested in Trizol. There was no medium change on the day of RNA harvest.

tag: cell type

value: Dox+


title: blood_healthy control 26


title: blood_healthy control 33


title: blood_healthy control 31

value: Black/African Origin


title: blood_healthy control 29


title: blood_healthy control 24


title: blood_healthy control 27


title: blood_healthy control 35


title: blood_healthy control 28


title: ES[MC1R(20):tetMettl5(15)]_day2_Dox-_rep1

tag: strain


title: ES[MC1R(20):tetMettl5(15)]_day2_Dox+_rep2

tag: gender


title: ES[MC1R(20):tetAff1(9)]_day2_Dox+_rep2

description:
Aff1(9)]_day2_Dox+
Raw data file:
4951-US12302333_251508710850_S01_GE2-v5_95_Feb07_1_4.txt
Represents ch2 in dual channel hybridzation.


title: ES[MC1R(20):tetMettl5(15)]_day2_Dox-_rep2

tag: culture condition


title: ES[MC1R(20):tetCtbp2(23)]_day2_Dox-_rep2


title: ES[MC1R(20):tetMettl5(15)]_day2_Dox+_rep1


title: ES[MC1R(20):tetCtbp2(23)]_day2_Dox-_rep1


title: blood_healthy control 25


title: blood_healthy control 22

value: Other (not defined)


title: ES[MC1R(20):tetCtbp2(23)]_day2_Dox+_rep2


title: blood_healthy control 20


title: blood_healthy control 19


title: blood_healthy control 18

value: Caucasian


title: blood_healthy control 23


title: ES[MC1R(20):tetCtbp2(23)]_day2_Dox+_rep1


title: ES[MC1R(20):tetTbx3(15)]_day2_Dox+_rep2


title: ES[MC1R(20):tetJarid2(37)]_day2_Dox-_rep2


title: blood_healthy control 16

value: Female


title: ES[MC1R(20):tetJmjd2c(14)]_day2_Dox-_rep2


title: ES[MC1R(20):tetJmjd2c(14)]_day2_Dox-_rep1


title: blood_healthy control 17


title: blood_healthy control 21


title: ES[MC1R(20):tetJmjd2c(14)]_day2_Dox+_rep2


title: ES[MC1R(20):tetJmjd2c(14)]_day2_Dox+_rep1


title: ES[MC1R(20):tetJarid2(37)]_day2_Dox+_rep1


title: ES[MC1R(20):tetEtv5(24)]_day2_Dox-_rep2


title: ES[MC1R(20):tetJarid2(37)]_day2_Dox+_rep2


title: ES[MC1R(20):tetTbx3(15)]_day2_Dox-_rep1


title: blood_healthy control 12

value: Black


title: blood_healthy control 13


title: ES[MC1R(20):tetJarid2(37)]_day2_Dox-_rep1

value: male


title: blood_healthy control 10

value: Hispanic


title: blood_healthy control 15


title: ES[MC1R(20):tetEtv5(24)]_day2_Dox-_rep1

value: Dox-

value: embryo


title: ES[MC1R(20):tetEtv5(24)]_day2_Dox+_rep2


title: blood_healthy control 14

value: Male


title: blood_healthy control 11


title: blood_healthy control 6


title: ES[MC1R(20):tetTcl1(6)]_day2_Dox+_rep2


title: ES[MC1R(20):tetTcl1(6)]_day2_Dox-_rep1


title: blood_healthy control 5


title: ES[MC1R(20):tetEtv5(24)]_day2_Dox+_rep1


title: blood_healthy control 9


title: ES[MC1R(20):tetTcl1(6)]_day2_Dox-_rep2


title: ES[MC1R(20):tetTcl1(6)]_day2_Dox+_rep1


title: blood_healthy control 8


title: blood_healthy control 7


title: blood_healthy control 2

value: caucasian


title: blood_healthy control 3


title: Salmonella grown on LB vs. Bile, replicate 1

city: Vancouver

first: L. Caetano

middle: M.

last: Antunes

state: BC

department: Michael Smith Laboratories

country: Canada

institute: The University of British Columbia

description: Replicate 1

hyb_protocol: Pre-hybridization, hybridization and washing steps were performed essentially as described in the PFGRC protocols, except that the hybridization buffer contained KREAblock blocking buffer (25%; KREATECH Biotechnology).

scan_protocol: After hybridization, slides were scanned using an Affymetrix 428 Array Scanner from Eurofins MWG Operon (Huntsville, USA).

data_processing:
Scanned glass slide images were processed with Spotfinder and MIDAS version 2.22. Each of the two slides was processed independently and contains two spots for each Salmonella gene, resulting in a total of 4 possible measurements of transcript abundance per gene. Genes that were detected in at least 3 of the 4 spots and showed average differences in signal intensity of 2.5-fold or more between the two growth conditions as well as individual differences of 2-fold or more in all spots with a detectable signal were selected and considered as differentially expressed.
Log2 ratio values after Total Intensity Normalization, LOWESS Normalization, Standard Deviation Regularization and Low Intensity Filtering.

organism: Salmonella enterica subsp. enterica serovar Typhimurium

source_name: Bacteria

label_protocol: Synthesis of cDNA was performed as described herein. The entire RNA sample (≥3 μg) was mixed with 6 μg of Random Primers (Invitrogen, Burlington, Canada) and 40 units of RNaseOUT recombinant ribonuclease inhibitor (Invitrogen, Burlington, Canada) in a total volume of 18.5 μL and incubated at 70oC for 10 minutes. Samples were incubated on ice for 30 seconds, centrifuged to bring down condensation and incubated with the following components (final concentrations; Invitrogen): First Strand Buffer (1X), dithiothreitol (DTT; 10 mM), dNTPs (dATP, dCTP, dGTP, dTTP; 0.5 mM each) and 100 units of SuperScript II reverse transcriptase in a total volume of 30 μL. The mixture was incubated at 42oC overnight and the reaction was stopped and the RNA degraded through the addition of 0.5 M EDTA and 1 M sodium hydroxide (10 μL each) and incubation at 65oC for 15 minutes. Then, 25 μL of 1 M Tris (pH 7) was added to neutralize the pH of the cDNA solution. cDNA was purified using the MinElute PCR Purification Kit (Qiagen) according to the manufacturer’s recommendations, except that the Qiagen wash and elution buffers were substituted by phosphate buffers, according to the PFGRC microarray protocol. cDNA was then precipitated using ammonium acetate and ethanol and labeled with Cy3 (LB cultures) and Cy5 (bile cultures) using the ULS aRNA Fluorescent Labeling Kit (KREATECH Biotechnology, Amsterdam, The Netherlands) according to the manufacturer’s instructions. Samples were mixed, dried and saved at -80oC until used.

growth_protocol: Two independent cultures of Salmonella enterica serovar Typhimurium SL1344 were grown overnight in Luria-Bertani (LB) broth with streptomycin (100 μg/mL) at 37oC with shaking (225 RPM). Cells were pelleted by centrifugation and resuspended in sterile Dulbecco’s phosphate-buffered saline (PBS). These suspensions were further diluted 1:50 in PBS and used to inoculate 70 μL of either LB or physiological murine bile (in 0.65-mL tubes) at a 1:100 dilution. Cultures were incubated for 24 hours at 37oC with agitation (225 RPM).

extract_protocol: RNA isolation began with the addition of 2 volumes of RNAprotect Bacteria Reagent (Qiagen, Hilden, Germany) to the bacterial cultures and incubation at room temperature for approximately 5 minutes. Cells were pelleted by centrifugation and RNA was isolated using the RNeasy Mini Kit (Qiagen) with the on-column DNase digestion, according to the manufacturer’s recommendations.

tag: growth medium

value: LB

value: Bile


title: HES3 ActivinA+Bmp4 3d rep1

city: Singapore

first: Kee Yew

last: Wong

address: 60, Biopolis Street, #02-01

department: Stem cell Biology

country: Singapore

institute: Genome Institute of Singapore

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were normalised via the following steps: : (a) Data Transformation: Set measurements less than 10.0 to 10.0; (b) Per Chip: Normalize to 75th percentile; (c) Per Gene: Normalize to median. (The data transformation was an arbitrary approach to reduce the chance of false positive, and the normalization methods were to allow relative comparison across arrays and within array.)

source_name: HES3 ActivinA+Bmp4

label_protocol: Biotinylated cRNA were prepared with Illumina TotalPrep RNA Amplification kit (by Ambion)

growth_protocol: HES3 cells (ESO3; www.nationalstemcellbank.org) were cultured in defined media (Knockout™ DMEM, 20% Knockout™ Serum Replacement, 2 mM L-Glutamine and 1X MEM NEAA) with 50 ng/ml FGF2 on gamma-irradiated human Ortec feeders (Ortec International, Inc.) as described previously (Crook et al., 2007). Colonies were passaged every 7 days by treating with 1 mg/ml Collagenase IV followed by fine scoring with a pipet tip. All tissue culture reagents were purchased from Invitrogen (Carlsbad, CA) unless otherwise indicated.

extract_protocol: RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit.

treatment_protocol: Feeder cells were depleted using a 70 µm cell strainer (BD Falcon™) prior to directed differentiation. This process typically resulted in a 90% depletion of feeders based on size differences when cell counts were performed. hESCs were plated onto fibronectin-coated plates and cultured in hESC media for two days. They were induced to differentiate using DE differentiation media (RPMI-1640, 2 % B-27 Supplement, 2 mM L-Glutamine and 1 x MEM NEAA) with 50 ng/ml Activin A (R & D Systems) and 50 ng/ml BMP4 (R & D Systems) for 3 days. Cells were then harvested for microarray analyses.

value: embryonic stem cell


title: blood_healthy control 4


title: Salmonella grown on LB vs. Bile, replicate 2

description: Replicate 2


title: HES3 ActivinA 3d rep1

source_name: HES3 ActivinA


title: HES3 ActivinA+Bmp4 3d rep3


title: Highly metastatic MKN45-GFP-4 cells

city: Zhunan, Miaoli

first: Chiung-Tong

last: Chen

address: No. 35, Keyan Road

department: Institute of Biotechnology and Pharmaceutical Research

country: Taiwan

institute: National Health Research Institutes

description: Diffuse type gastric cancer cells, GFP transfected, 4 cycles Transwell selected, harvested after 5 passages

hyb_protocol: Cyanine-labeled RNAs (cRNAs) of 2 µg were fragmented to an average size of 50-100 nucleotides by incubation with fragmentation buffer at 60oC for 30 min. The fragmented labeled cRNAs were then pooled and hybridized to Human 1A Oligo Microarray (V2) from Agilent Technologies (Santa Clara, CA, USA) at 60°C for 17 hr with Agilent microarray hybridization chamber.

scan_protocol: After washed, the arrays were dried using a nitrogen-filled air gun and scanned with Agilent dual DNA microarray scanner at 535 nm for Cy3 and 625 nm for Cy5, respectively.

data_processing: The scanned images were extracted by Feature Extraction 8.1 from Agilent Technologies and analyzed to quantify signal and background intensity and to substantially normalize the data by rank-consistency-filtering LOWESS method.

source_name: 4 cycles selected MKN45-GFP cancer cell line

label_protocol: Total RNA of 0.5 μg was amplified by a low RNA input fluorescent linear amplification kit (Cat. No. 5184-3523) from Agilent Technologies (Santa Clara, CA, USA) using Cyanine 3 (Cy3)-labeled CTP or Cyanine 5 (Cy5)-labeled CTP from Perkin Elmer (Waltham, MA, USA) during the in vitro transcription. The cancer cell RNAs were labeled by Cy5 and Universal Human Reference RNAs (Cat. No. 636538) from Clontech (Mountain View, CA, USA) were labeled by Cy3 with Agilent Low RNA Labeling Kit.

growth_protocol: MKN45 serial cell lines were grown in RPMI1640 medium (Invitrogen, Cat. No. 23400021) with 10% fetal bovine serum (FBS, Invitrogen, Cat. No. 10099133) and 2mM L-glutamine (Invitrogen, Cat. No. 25030081) at 37 ℃, 5% CO2.

extract_protocol: Total RNA extracted using Trizol following manufacturer's instructions

treatment_protocol: MKN45-GFP cells were obtained from stable transfection of MKN45 cells with pEGFP-C1 plasmid. Highly metastatic MKN45-GFP sublines were obtained from several cycles selection by Matrigel-coated Transwell.

value: 62 year-old

tag: tissue

value: Stomach

source_name: GFP transfected MKN45 cancer cell line


title: Highly metastatic MKN45-GFP-12 cells

description: Diffuse type gastric cancer cells, GFP transfected, 12 cycles Transwell selected, harvested after 5 passages

source_name: 12 cycles selected MKN45-GFP cancer cell line


title: HES3 ActivinA 3d rep2


title: Highly metastatic MKN45-GFP-10 cells

description: Diffuse type gastric cancer cells, GFP transfected, 10 cycles Transwell selected, harvested after 5 passages

source_name: 10 cycles selected MKN45-GFP cancer cell line


title: Parental MKN45 cells

description: Parental MKN45 diffuse type gastric cancer cells, non-transfected, non-selected, harvested after several passages

source_name: Non-transfected MKN45 cancer cell line


title: fm17_animal_805_muscle

city: Castanet tolosan

first: Laurence

last: Liaubet

address: chemin de borde rouge

department: Animal Genetic

country: France

institute: INRA

description: Muscle samples were biopsied from Longissimus lumborum muscle 20' after stunning and exsanguination

hyb_protocol: The labelled RNA of each muscle sample was hybridized at 68°C for 24 h to a single array containing. The hybridization images from vector and complex targets were quantified using the semi-automated software, BZScan (15). Fixed circle segmentation, i.e. a grid process with a fixed spot diameter was applied. The grid obtained with vector hybridization images was used to assess the reproducibility of the quantification signals between array replicates and also to analyze the complex target hybridization images. The complex hybridization images were quantified by extracting the intensity of each spot.

scan_protocol: BAS-5000 Fuji - BZScan software

data_processing: Data from BZScan outputs were normalized by the median of each array. To minimize the effect of the amount of DNA products spotted at each spot, data were divided by vector oligonucleotide values. Data were obtained from two different hybridization experiments; data were centered with the median value obtained from the arrays within each hybridization experiment. Then data were logarithmically (log10) transformed. Finally, 2,464 clones with signal intensity higher than 2 times the median value of background (water, plasmid and empty spots) were further analyzed using R software (R, language and environment for statistical computing, R Foundation for statistical computing, Vienna, Austria, http://www.cran.r-project.org).

organism: Sus scrofa

label_protocol: cDNA was synthesized and labeled from 5 µg total RNA by simultaneous reverse transcription of mRNA using SuperScript II RNase H-Reverse Transcriptase (Invitrogen SARL, Life Technologies, Cergy Pontoise) and alpha-33P-deoxy-CTP.

extract_protocol: Total RNA was isolated from each of the 57 muscle samples. Briefly, the muscle samples were disrupted, homogenized and ground to a fine powder by rapid agitation for 1 min in a liquid-nitrogen cooled grinder with stainless steel beads. An aliquot of 250-300 mg of the fine powder was then processed for total RNA isolation and purification using RNeasy\ Fibrous Tissue Midi kit according to the manufacturers instructions (Qiagen SA France, Courtaboeuf, France). The method included a proteinase K digestion step to remove proteins and a DNase digestion step to remove contaminating DNA. The extracted total RNA was eluted in 300 µl of RNase-free water and stored at -80°C. RNA quality and concentration were controlled using an AGILENT 2100 bioanalyzer (RNA solutions and RNA 6000 Nano Lab-Chip Kit, Agilent Technologies France, Massy, France).

value: skeletal muscle

tag: animalnumber


title: blood_healthy control 1

value: Indian (Indian Subcontinent)


title: fm17_animal_706_muscle


title: fm17_animal_369_muscle


title: fm17_animal_758_muscle


title: HES3 ActivinA 3d rep3

tag: cell line


title: fm17_animal_757_muscle


title: Left Leg-3hrs_S13-3L

city: Novato

first: Simon

last: Melov

address: 8001 Redwood Blvd

institute: Buck Institute for Research on Aging

description:
363419A07.pair
S13-3L

hyb_protocol: The resulting hybridized chips were then scanned and quantitated via a GenePix 4200 Scanner (Molecular Devices, Sunnyvale, CA, USA), and the quantitated images were used to evaluate relative gene expression between samples.

scan_protocol: As per GenePix 4200 standard protocol.

data_processing: To minimize nuisance experimental variation among the  data, we used between array loess normalization using the affy package in the Bioconductor repository.  We used a mixed model approach to estimate the differential expression (at the log2 scale) of massage.  Specifically, we fit a model, for each probe separately. Thus, the p-value, by probe (and time t=0 minutes and 2.5 hours) is that for the null, where the Wald statistic is returned by the mixed model procedure. We performed these regressions both by probe and post-baseline time of measurement (0 minutes and 2.5 hours).  For each of the sets by time, we adjusted for multiple testing using family-wise error rate.

source_name: vastus lateralis

label_protocol: Samples were reverse transcribed and amplified with one round of whole-transcriptome amplification via the WTA2  complete whole transcriptome kit from Sigma (Sigma-Aldrich, St. Louis, MO, USA). After amplification, the resulting omniplex cDNA library was then further purified using a Qiagen PCR purification chip (Qiagen), and further evaluated for integrity and yield via Bioanalyzer. cDNA libraries were then labeled, hybridized and washed onto 12-plex 135K (HG18) Nimblegen oligonucleotide whole genome microarrays (Roche Nimblegen, Madison, WI, USA), via the one color Nimblegen labeling kit as per the manufacturers instructions.

extract_protocol: RNA was extracted from whole muscle using an automated homogenization and extraction apparatus (QiaCube, Qiagen, Valencia, CA, USA) according to the manufacturers’ protocols for the RNeasy mini kit.  RNA yield and integrity was then evaluated via Bioanalyzer (Agilent, Santa Clara, CA, USA)

tag: subject

tag: massage leg

value: L

tag: time

tag: biopsy leg

value: vastus lateralis


title: cerk1-2_water_6h_rep3

city: Wuhan

first: Kenichi

last: Tsuda

address: No.1 Shizishan Road

country: China

institute: Huazhong Agricultural University

description: The samples were collected six hours after the treatment.

hyb_protocol: Hybridization was performed by NimbleGen standard operating protocol.

scan_protocol: Scanning was performed by NimbleGen standard operating protocol.

data_processing: The raw data (.pair file) was subjected to quantile normalization. The software that we used is R ver 2.10. Normalized and averaged transcript variat values for each gene if several transcript variatnts exist.

organism: Arabidopsis thaliana

label_protocol: Labeling was performed by NimbleGen standard operating protocol.

growth_protocol: Arabidopsis wild type plants, lym1-1, lym3-1, and cerk1-2 were grown on soil in environmental chambers under short-day conditions (8 h photoperiod, 22°C, 40-60 % humidity) at a light intensity of 150 µmol/m2s.

extract_protocol: Total RNA from leaves was isolated using the Tri Reagent method according to the manufacturer’s recommendations (Sigma)

treatment_protocol: Leaves of 4-5 week-old plants were infiltrated with 100 μg/ml Xanthomonas campestris pv. campestris PGN or water as a control using a needle-less syringe and analyzed after 6 h.

tag: genotype

tag: treatment

value: water


title: cerk1-2_PGN_6h_rep3

value: PGN


title: fm17_animal_791_muscle


title: Right Leg-30min_S13-2R

description:
363189A01.pair
S13-2R

value: R


title: fm17_animal_N26_muscle


title: lym3-1_water_6h_rep3


title: fm17_animal_N30_muscle


title: lym3-1_PGN_6h_rep3


title: lym1-1_water_6h_rep3


title: HES3 ActivinA+Bmp4 3d rep2


title: Right Leg-3hrs_S13-3R

description:
363189A10.pair
S13-3R


title: Left Leg-30min_S13-2L

description:
362503A04.pair
S13-2L


title: lym1-1_PGN_6h_rep3


title: fm17_animal_N42_muscle


title: WT_PGN_6h_rep3

value: Wild-type


title: fm17_animal_N18_muscle


title: fm17_animal_693_muscle


title: lym3-1_water_6h_rep2


title: fm17_animal_N71_muscle


title: Left Leg-3hrs_S10-3L

description:
362468A07.pair
S10-3L


title: WT_water_6h_rep3


title: cerk1-2_water_6h_rep2


title: Right Leg-3hrs_S10-3R

description:
363419A06.pair
S10-3R


title: Pre_S13-1R

description:
363676A11.pair
S13-1R

value: Pre


title: Right Leg-30min_S10-2R

description:
363419A08.pair
S10-2R


title: lym1-1_water_6h_rep2


title: fm17_animal_802_muscle


title: lym3-1_PGN_6h_rep2


title: fm17_animal_763_muscle


title: cerk1-2_PGN_6h_rep2


title: Left Leg-30min_S10-2L

description:
363189A08.pair
S10-2L


title: Pre_S10-1R

description:
363419A12.pair
S10-1R


title: WT_water_6h_rep2


title: lym1-1_PGN_6h_rep2


title: fm17_animal_699_muscle


title: cerk1-2_water_6h_rep1


title: Right Leg-3hrs_S9-3R

description:
363676A07.pair
S9-3R


title: cerk1-2_PGN_6h_rep1


title: lym1-1_PGN_6h_rep1


title: lym1-1_water_6h_rep1


title: lym3-1_water_6h_rep1


title: WT_PGN_6h_rep2


title: fm17_animal_416_muscle


title: fm17_animal_N69_muscle


title: lym3-1_PGN_6h_rep1


title: fm17_animal_344_muscle


title: WT_PGN_6h_rep1


title: Left Leg-3hrs_S9-3L

description:
363189A09.pair
S9-3L


title: BMP2-treated XEN cells rep2

city: Edinburgh

first: Tilo

last: Kunath

address: 5 LIttle France Drive

department: Centre for Regenerative Medicine

country: United Kingdom

institute: University of Edinburgh

description: Gene expression data of BMP2-treated XEN cells

scan_protocol: Affymetrix Gene Chip Scanner 3000

data_processing: GCOS 1.4; Algorithm: ExpressionStat 5.0

source_name: IM8A1 XEN cells

label_protocol: Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Affymetrix)

growth_protocol: IM8A1 XEN cells were grown in GMEM+10%FBS at 37oC, 5%CO2 in a humidified environment

extract_protocol: Total RNA was isolated with QIAGEN's RNeasy Midi kit, and cDNA was prepared using Affymetrix one-cycle kit.

treatment_protocol: XEN cells were treated with BMP2 (20 ng/ml), activin A (30 ng/ml), both or niether for 6 days.

value: PO strain

tag: treatment group


title: Right Leg-30min_S9-2R

description:
362468A05.pair
S9-2R


title: fm17_animal_783_muscle


title: Untreated XEN cells rep2

description: Gene expression data of untreated XEN cells

value: untreated


title: fm17_animal_351_muscle


title: Left Leg-30min_S9-2L

description:
362503A08.pair
S9-2L


title: Activin+BMP2-treated XEN cells

description: Gene expression data of Activin+BMP2-treated XEN cells


title: Pre_S9-1R

description:
362468A12.pair
S9-1R


title: fm17_animal_N46_muscle


title: Right Leg-3hrs_S8-3R

description:
363676A05.pair
S8-3R


title: WT_water_6h_rep1


title: Activin-treated XEN cells

description: Gene expression data of Activin-treated XEN cells

value: Activin-treated


title: fm17_animal_689_muscle


title: Right Leg-30min_S8-2R

description:
362503A12.pair
S8-2R