title: 2nd generation control - 2nd generation high fat sensitive_pair 2

hyb_protocol: Prehybridization was performed in a Coplin jar. Slides were incubated in prehybridization medium (1% BSA, 0.1% SDS and 5XSSC) at 42C in a thermostatically controlled water bath for 45 min. They were then transferred to a metallic support and immersed in water several times. The slides were then washed in 95% ethanol and dried by centrifugation for 1 min at 120 g. Hybridization. Cy3 and Cy5 labeled cDNAs were pooled and dried to microdrops in a Speedvac. The hybridization medium (50% formamide, 4X SSC, 5X Denhardt’s solution, 0.1% SDS) was prepared and denatured by heating at 98C for 3 min. The printed area of the slides was hybridized with 15 microliters of the solution containing the labeled cDNAs. Each array was hybridized at 42C overnight. Hybridization was carried out under a 22 x 22 mm coverslip (Sigma-Aldrich). The slides were then washed for 4 min in 1 x SSC-0.2% SDS, for 3 min in 1 x SSC with gentle shaking and then for 3 min in 0.1 x SSC. Slides were dried by centrifugation for 1 min at 120 g.

scan_protocol: The arrays were scanned with an Affymetrix ® 428 TM Array Scanner (Affymetrix, Inc., Santa Clara, CA). The Cy3 and Cy5 fluorochromes were excited using lasers with wavelengths of 532 and 635 nm, respectively. The sensitivity of the scanner was adjusted to limit the number of saturated spots and to obtain comparable intensity distributions for both channels. The acquired image was further analyzed with GenePix Pro 5.0.1.24 software (Axon Instruments, Inc., Union City, CA) to quantify the spots and local background signals. We used median pixel intensity as a summary measure of the foreground and background signals for each spot. Standard quality reports and graphs were developed with the MARRAY 1.12.0 package of R 2.4 /BIOCONDUCTOR 1.9  to check background homogeneity on the array and foreground signals characteristics according to gene family and print-tip localization.

data_processing: Data processing and analysis were performed with the MARRAY 1.12.0 and LIMMA 2.9.17 packages of R 2.4/BIOCONDUCTOR 1.9. Spots with missing or null foreground signals were flagged. Background correction was applied to the foreground signals using the backgroundCorrect() function of the LIMMA package with the normexp method and an offset parameter fixed to 32 to control the 'fanning' of log-ratios at low intensities. For each dye-swapped array pairs, a dye corrected signal of the first condition of the pair (DS1) was obtained by computing the geometric mean of the Cy3 signal of the first arrray and the Cy5 signal of the second array, a dye corrected signal of the second condition of the pair (DS2) was obtained by computing the geometric mean of the Cy5 signal of the first arrray and the Cy3 signal of the second array. The log2(DS2/DS1) of the dye corrected signals (M) was then computed by the maNorm function of the MARRAY package using a loess normalisation based on the log2 average of the two signals (A).  Statistical comparisons between experimental conditions were performed on the log-ratios by the linear model implemented in LIMMA. The lmFit function allowed us to fit a linear model according to the experimental design. As two technical replicates of most oligonuleotides were spotted in the same array block, the mean effects were estimated using the two individual replicates measures and the variance corrected by a common estimation of the correlation between duplicates (dupcor function). For 8 oligonucleotides, 4 replicates were spotted in two separate blocks. They were analysed by grouping the two replicates pertaining to the same block. The comparisons of interest were then estimated by the contrasts.fit function allowing to test either direct, indirect or grouped condition comparisons. Statistical tests were performed using a robust estimation of the variance by an empirical bayes approach (eBayes function). Significance levels were adjusted for multiple comparisons by the FDR method.

source_name: 2nd generation control mouse liver

label_protocol: RNA quality was assessed by electrophoresis, using the RNA 6000 Assay on an Agilent 2100 bioanalyzer (Agilent Technologies). For cDNA synthesis oligo-dt and RPO were added to 15 µg total RNA and the mixture was incubated for 10 min at 70°C and then cooled on ice. We added 15 µl of 2.5 x premix buffer (500 µM dCTP, 500 µM dATP, 500 µM dGTP, 100 µM dTTP, 100 µM Cy3-dUTP/Cy 5-dUTP, 600 U Superscript II Reverse Transcriptase, 10 mM DTT and 1 x reverse transcriptase buffer), 1 µl of Cy3 dUTP or Cy5 dUTP and 2 µl of superscript II reverse transcriptase to each sample. Reverse transcription was carried out at 42°C overnight. We then added 15 µl of NaOH 0.1 N and incubated the mixture for 10 min at 70°C to degrade the RNA template, followed by 15 µl of 0.1 N HCl to neutralize the reaction. The product was purified with the Qiaquick PCR Purification Kit® from Qiagen.

growth_protocol:
F0 generation: Male and female C57BL/6J mice were obtained from Harlan at four weeks of age. After one week of adaptation, the animals were housed in individual cages in a controlled-temperature room with a 12-h light/dark cycle with ad libitum access to water and chow diet.
F1 generation: At six months of age, F0 males and F0 females were mated. Males were removed once the females were pregnant. The day after delivery, all F1 litters were randomly reduced to four or five pups. After weaning, each mouse of both sexes was transferred to an individual cage and randomly assigned to the control (CD, 10% of calories from fat, 20% from proteins and 70% from carbohydrates) or high-fat (HFD, 60% from fat, 20% from proteins and 20% from carbohydrates) diets over 20 weeks. Diets were supplied in pellet form by Research Diets (CD: D12450B, HFD: D12492).
F2 generation: At six months of age, F1 female mice fed the HFD that developed obesity (S1) were crossed with F1 male mice on the CD. The pregnant F1 females were maintained on the CD from mating until the end of lactation and the F2 offspring (male and female) was switched onto the HFD for 20 weeks after weaning. Mice were segregated according to their weight as sensitive (S1, S2) or resistant (R1, R2) to the HFD (30). In parallel, F1 female mice on the CD (N1) were crossed with F1 male mice on the CD to generate F2 control mice fed the control diet after weaning (N2).

extract_protocol: Total RNA was extracted from liver tissue using the RNeasy Mini kit® (Qiagen S.A). RNA concentrations were determined using the NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies) and quality was assessed using agarose gel electrophoresis.

tag: background strain

value: female

tag: generation

value: liver

tag: diet

value: control

tag: response to high_fat_feeding

source_name: 2nd generation high fat sensitive mouse liver

value: high fat

value: sensitive


title: FAP 17

status: Public on Apr 01 2012

type: genomic

city: Leiden

first: Els

last: Robanus-Maandag

address: Einthovenweg 20

department: Human Genetics

country: Netherlands

institute: LUMC

hyb_protocol: Labelled test and reference samples were pooled and precipitated in the presence of Cot1 DNA (Invitrogen, Breda, The Netherlands). DNA pellet was dissolved in hybridisation mixture. Sample was hybridized for 20 hours followed post-hybridisation washes and drying of slides by using an automated hybridisation station (Tecan Benelux BVBA, Giesen, The Netherlands).

scan_protocol: Scanned on an Genepix 4100A scanner. Images were quantified using Genepix Pro 4.1 software.

data_processing: Within this software, spots in which the reference DNA intensity was either below five times the average of the background or presented more than 3% saturated pixels were excluded from further analyses. The test/reference ratios were normalized for the median of the ratios of all features. The triplicates of the features were averaged in a homemade routine developed in Microsoft Excel 2000, and spots outside the 20% confidence interval of the average of the replicate were excluded. Only those targets presenting at least two spots within 20% confidence interval of their average were used. Unbalances of the targets were determined based on log2 ratios of the average of their replicates, and we considered sequences as amplified or deleted when outside the ±0.3 range.

molecule: genomic DNA

organism: Homo sapiens

source_name: tumors

label_protocol: Overnight random prime labelling reaction (BioPrime Random Prime labelling Kit, Invitrogen, Breda, The Netherlands)

extract_protocol: DNA was isolated from 25 x 20 uM frozen sections using the Genomic-tips 20/G kit (Qiagen, Hilden, Germany), yielding 10-60 ug genomic DNA.

tag: gender

value: M

tag: group

value: FAP

tag: age

value: no

tag: mutationapc

value: yes

tag: location

value: abd wall

tag: genomeprofile

tag: sample type

value: Gender matched DNA


title: 2nd generation control - 2nd generation high fat sensitive_pair 1

type: RNA

city: Paris

first: Jean-Philippe

last: Jais

address: 149 rue de Sevres

country: France

institute: Université Paris Descartes - Hopital Necker-Enfants Malades

molecule: total RNA

organism: Mus musculus

tag: tissue


title: 2nd generation control - 2nd generation high fat resistant_pair 3

source_name: 2nd generation high fat resistant mouse liver

value: resistant


title: Non-FAP 1

value: F

value: Non-FAP

value: extra-abd shoulder


title: 25 Compact3 vs. pooled reference

city: Pacific Grove

first: Nishad

last: Jayasundara

state: CA

address: 120 Oceanview Blvd

country: USA

institute: Stanford University

description: 25C Compact biological replicate 3 of 4 compared to pooled reference.

hyb_protocol: Hybridization of the microarrays followed the Two-Color Microarray-Based Gene Expression Analysis protocol with reagents from the Gene Expression Hybridization Kit (Agilent Technologies, Santa Clara, CA, USA).

scan_protocol: Axon GenePix® 4000B microarray scanner (Molecular Devices, Sunnyvale, CA, USA).

data_processing: Feature Extraction 9.5.3 image analysis software (Agilent Technologies, Santa Clara, CA, USA) was used to extract and process the raw microarray images using protocol GE2-v5_95_Feb07. After removal of flagged spots, Lowess normalization was performed to normalize the data. We used the Agilent GeneSpring program for further analysis.

organism: Thunnus orientalis

source_name: fish 3 at 25C, ventricular compact

label_protocol: Target preparation including reverse transcription of total RNA, RNA amplification by in vitro transcription, and aRNA labeling was conducted using the Amino Allyl MessageAmp™ II aRNA Amplification Kit (Applied Biosystems, Foster City, CA, USA) according to manufacturer’s instructions.

extract_protocol:
Cardiac tissue samples were collected from PBFT caught by hook and line and temperature acclimated at the Tuna Research and Conservation Center, Stanford University. Tissues were sampled from the fish in a sterile manner and fixed immediately in RNAlater.

Total RNA was extracted using Trizol following the manufacturer's instructions.

value: ventricular compact

tag: acclimation temperature (celsius)

source_name: Pooled reference of total RNA from all experimental samples

value: atrium, ventricular compact, ventricular spongy

value: reference


title: 20 Compact4 vs. pooled reference

description: 20C Compact biological replicate 4 of 4 compared to pooled reference.

source_name: fish 4 at 20C, ventricular compact


title: FAP 16


title: FAP 15

value: extra-abd inguinal canal


title: 20 Compact3 vs. pooled reference

description: 20C Compact biological replicate 3 of 4 compared to pooled reference.

source_name: fish 3 at 20C, ventricular compact


title: FAP 14

value: intra-abd small bowel


title: 20 Compact1 vs. pooled reference

description: 20C Compact biological replicate 1 of 4 compared to pooled reference.

source_name: fish 1 at 20C, ventricular compact


title: 20 Compact2 vs. pooled reference

description: 20C Compact biological replicate 2 of 4 compared to pooled reference.

source_name: fish 2 at 20C, ventricular compact


title: 14 Compact3 vs. pooled reference

description: 14C Compact biological replicate 3 of 4 compared to pooled reference.

source_name: fish 3 at 14C, ventricular compact


title: 14 Compact4 vs. pooled reference

description: 14C Compact biological replicate 4 of 4 compared to pooled reference.

source_name: fish 4 at 14C, ventricular compact


title: 1st generation control - 1st generation high fat_pair 5

source_name: 1st generation control mouse liver

value: female

value: liver

value: control

source_name: 1st generation high fat mouse liver

value: high fat


title: 14 Compact2 vs. pooled reference

description: 14C Compact biological replicate 2 of 4 compared to pooled reference.

source_name: fish 2 at 14C, ventricular compact


title: 2nd generation control - 2nd generation high fat resistant_pair 1


title: Non-FAP 24

value: M

value: no

value: extra-abd leg


title: FAP 13

value: FAP

value: yes

value: abd wall

value: Gender matched DNA


title: 14 Compact1 vs. pooled reference

description: 14C Compact biological replicate 1 of 4 compared to pooled reference.

source_name: fish 1 at 14C, ventricular compact


title: 2nd generation control - 2nd generation high fat resistant_pair 2

value: resistant


title: FAP 11

value: F

value: intra-abd


title: 25 Atrium4 vs. pooled reference

description: 25C Atrial biological replicate 4 of 4 compared to pooled reference.

source_name: fish 4 at 25C, atrium

value: atrium

value: atrium, ventricular compact, ventricular spongy

value: reference


title: 1st generation control - 1st generation high fat_pair 4

value: female

value: sensitive


title: FAP 10


title: 2.0N (2006)

city: Scottsdale

first: Michael

middle: Thomas

last: Barrett

state: AZ

address: 13400 East Shea Boulevard

department: Molecular Pharmacology and Experimental Therapeutics

institute: Mayo Clinic Arizona

hyb_protocol: All hybridizations were done for 40 hours at 20 rpm and 65C

scan_protocol: Microarray slides were scanned using an Agilent 2565C DNA scanner and images were analyzed with Agilent Feature Extraction version 10.5 using default settings

data_processing: The aCGH data from each sorted sample that passed our QC metrics were analyzed in Agilent Genomics Workbench 5.0 using the ADM2 step gram algorithm to identify genomic intervals that were significantly aberrant relative to a normal diploid genome.11 We then ranked the aberrant intervals in each cancer genome based on the relative fold change and the number of annotated genes in each interval.

label_protocol: 1 ug of amplified sample and 1 ug of amplified reference template were digested with DNaseI then labeled with Cy-5 dUTP and Cy-3 dUTP respectively, using a BioPrime labeling kit (Invitrogen, Carlsbad, CA).

extract_protocol: DNAs were extracted using Qiagen micro kits (Qiagen, Valencia, CA). For each hybridization, 100 ng of genomic DNA from each sample and of pooled commercial 46XX reference DNA (Promega, Madison, WI) were amplified using the GenomiPhi amplification kit (G.E. Healthcare, Piscataway, NJ).

tag: disease state

value: Anal carcinoma

value: tumor

source_name: Reference pooled 46XX

value: Normal female genome


title: 1st generation control - 1st generation high fat_pair 3

value: liver

value: control

value: high fat


title: 25Atrium2 vs. pooled reference

description: 25C Atrial biological replicate 2 of 4 compared to pooled reference.

source_name: fish 2 at 25C, atrium


title: FAP 12

source_name: tumors

value: FAP

value: no

value: yes


title: 25 Atrium1 vs. pooled reference

description: 25C Atrial biological replicate 1 of 4 compared to pooled reference.

source_name: fish 1 at 25C, atrium


title: 1st generation control - 1st generation high fat_pair 2


title: TY14583 AN2

value: Pancreatic Neuroendocrine


title: TU14583 AN1


title: FAP 9

value: M

value: Gender matched DNA


title: TU14583 2.0N


title: 1st generation control - 1st generation high fat_pair 1


title: IRF Erd 2

city: San Francisco

first: Paolo

last: Manzanillo

department: Microbiology and Immunology

institute: University of California at San Francisco

description: Biological replicate 2

hyb_protocol: Cy5 and Cy3 labelled probes were mixed and hybridized to oligonucleotide MEEBO arrays at 63 C for 16h using a MAUI HYB chamber.  After hybridization, slides were washed in batch.

scan_protocol: Slides were scanned using an Axon 4000B scanner and GenePix software. Data was acquired using GenePix and Acuity 4.0 software

data_processing: Data was normalized using Ratio-based normalization(ratio of medians) using GenePix pro settings in Actuity 4.0 software

source_name: IRF3 BMDMs infected with WT-ERD

label_protocol: Total RNA was reverse transcribed and amplified into aRNA using the MessageAMPII RNA Amplification kit (Ambion) per manufacturer's instructions and labeled with Cy3 and Cy5 dye(Amersham).

growth_protocol: Bone marrow derived macrophages were isolated from wild-type B6 or IRF3-/- mice and grown in DMEM-H21 supplemented with MCSF

extract_protocol: Total RNA was extracted from cells using the Trizol-micro-midi RNA extraction kit(Invitrogen) per manufacturer's instructions

treatment_protocol: macrophages were infected with either wild-type Erdman M.tuberculosis or ESX-1 mutant erdman M.tuberculosis

tag: infection

value: wild type M. tuberculosis

tag: cell type

value: bone marrow derived macrophage

tag: genotype

tag: genetic background

source_name: Reference Pool

value: Pooled from all samples used


title: FAP 8

value: F

value: intra-abd


title: TU13884 AN


title: endoderm, NF15, Ngn3GR mRNA, -DEX, biological rep3

city: Woods Hole

first: Marko

last: Horb

state: MA

address: 7 MBL Street

institute: Marine Biological Laboratory

description:
Xenopus SAMPLE 3 -Dex
Gene expression data from Ngn3-GR injected embryo not treated with DEX. Anterior endoderm dissected at NF15.

hyb_protocol: 10 μg of fragmented target cRNA was hybridized at 45°C with rotation for 16 hours (Affymetrix GeneChip® Hybridization Oven 640) to probe sets present on an Affymetrix GeneChip Xenopus Genome array. The GeneChip® arrays were washed and then stained (SAPE, streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 450.

scan_protocol: The arrays were scanned on a GeneChip® Scanner 3000 7G. The results were quantified and analyzed using GCOS 1.2 software (Affymetrix, Inc.) using default values (Scaling, Target Signal Intensity = 500; Normalization, All Probe Sets; Parameters, all set at default values).

data_processing: The data were analyzed with Flexarray using the RMA algorithm for normalization and the EB(Simon Wright)P algorithm for statistical analysis.

label: biotin

organism: Xenopus laevis

source_name: Endoderm of embryos not treated with DEX

label_protocol: Single-stranded, then double-stranded cDNA was synthesized from the poly(A)+ mRNA present in the isolated total RNA (typically 10 μg total RNA starting material each sample reaction) using the SuperScript Double-Stranded cDNA Synthesis Kit (Invitrogen Corp., Carlsbad, CA ) and poly (T)-nucleotide primers that contained a sequence recognized by T7 RNA polymerase. A portion of the resulting ds cDNA was used as a template to generate biotin-tagged cRNA from an in vitro transcription reaction (IVT), using the Affymetrix GeneChip® IVT Labeling Kit. 15 μg of the resulting biotin-tagged cRNA was fragmented to an average strand length of 100 bases (range 35-200 bases) following prescribed protocols (Affymetrix GeneChip® Expression Analysis Technical Manual).

growth_protocol: Embryos were grown in 0.1XMMR.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Embryos were cultured in 30 ml of 0.1XMMR in a final concentration of 10 micromolar of dexamethasone.

value: endoderm

tag: developmental stage

tag: overexpression

tag: treatment

value: no dexamethasone (DEX)


title: TU8632 AN

value: tumor

value: Normal female genome


title: 4.0N (2009)

value: Anal carcinoma


title: 2nd generation high fat resistant - 2nd generation high fat sensitive_pair 4

source_name: 2nd generation high fat resistant mouse liver

tag: background strain

tag: gender

value: female

tag: generation

value: liver

tag: diet

value: high fat

tag: response to high_fat_feeding

value: resistant

source_name: 2nd generation high fat sensitive mouse liver

value: sensitive


title: TU8632 2.0N

value: Pancreatic Neuroendocrine


title: 2nd generation high fat resistant - 2nd generation high fat sensitive_pair 3


title: FAP 5

value: M

tag: group

value: FAP

tag: age

value: no

tag: mutationapc

value: yes

tag: location

tag: genomeprofile

value: Gender matched DNA


title: 20 Atrium4 vs. pooled reference

description: 20C Atrial biological replicate 4 of 4 compared to pooled reference.

source_name: fish 4 at 20C, atrium

tag: tissue

value: atrium

tag: acclimation temperature (celsius)

source_name: Pooled reference of total RNA from all experimental samples

value: atrium, ventricular compact, ventricular spongy

tag: sample type

value: reference


title: FAP 6

value: intra-abd


title: FAP 4

value: F


title: 2nd generation high fat resistant - 2nd generation high fat sensitive_pair 1


title: 1st generation high fat - 2nd generation high fat sensitive_pair 2


title: FAP 7

value: extra-abd shoulder/back


title: IRF Erd 1

description: Biological replicate 1

tag: infection

value: wild type M. tuberculosis

tag: cell type

value: bone marrow derived macrophage

tag: genotype

tag: genetic background

value: Pooled from all samples used


title: Wildtype ESX 2

description: Biological replicate 2

source_name: WT BMDMs infected with ESX1-KO

value: ESX-1 mutant M. tuberculosis

value: wild type


title: 2.0N

tag: disease state

value: Leiomyosarcoma

value: tumor

value: Normal female genome


title: Wildtype ESX 1

description: Biological replicate 1


title: 20 Atrium1 vs. pooled reference

description: 20C Atrial biological replicate 1 of 4 compared to pooled reference.

source_name: fish 1 at 20C, atrium


title: 20 Atrium3 vs. pooled reference

description: 20C Atrial biological replicate 3 of 4 compared to pooled reference.

source_name: fish 3 at 20C, atrium


title: 14 Atrium4 vs. pooled reference

description: 14C Atrial biological replicate 4 of 4 compared to pooled reference.

source_name: fish 4 at 14C, atrium


title: Wildtype Erd 1

description: Biological replicate 1

source_name: WT BMDMs infected with WT-Erd


title: 14 Atrium3 vs. pooled reference

description: 14C Atrial biological replicate 3 of 4 compared to pooled reference.

source_name: fish 3 at 14C, atrium


title: 1st generation high fat - 2nd generation high fat sensitive_pair 1

source_name: 1st generation high fat mouse liver

tag: background strain

tag: gender

value: female

value: liver

value: high fat

value: sensitive


title: 1st generation high fat - 2nd generation high fat resistant_pair 3

tag: generation

tag: diet

value: resistant


title: 20 Atrium2 vs. pooled reference

description: 20C Atrial biological replicate 2 of 4 compared to pooled reference.

source_name: fish 2 at 20C, atrium

value: atrium

value: atrium, ventricular compact, ventricular spongy

value: reference


title: FAP 3

source_name: tumors

value: M

tag: group

value: FAP

value: no

value: yes

value: intra-abd

value: Gender matched DNA


title: 25 Atrium3 vs. pooled reference

description: 25C Atrial biological replicate 3 of 4 compared to pooled reference.

source_name: fish 3 at 25C, atrium


title: 1st generation high fat - 2nd generation high fat resistant_pair 2

tag: response to high_fat_feeding


title: Wildtype Erd 2

description: Biological replicate 2

value: wild type M. tuberculosis

value: bone marrow derived macrophage

value: wild type

value: Pooled from all samples used


title: IRF3 Mock2

description: Biological replicate 2

source_name: Mock infected IRF3-/- BMDMs

value: mock


title: FAP 1

tag: age

tag: mutationapc

value: intra-abd recurrence


title: 1st generation high fat - 2nd generation high fat resistant_pair 1

value: female

value: liver

value: high fat

value: sensitive


title: 14 Atrium2 vs. pooled reference

description: 14C Atrial biological replicate 2 of 4 compared to pooled reference.

source_name: fish 2 at 14C, atrium

value: atrium

value: atrium, ventricular compact, ventricular spongy

value: reference


title: 2nd generation high fat resistant - 2nd generation high fat sensitive_pair 2

value: resistant


title: IRF3 Mock1

description: Biological replicate 1

source_name: Reference Pool


title: FAP 2

value: M

value: FAP

value: no

value: yes

tag: location

value: abd wall

tag: genomeprofile


title: Wildtype Mock2

description: Biological replicate 2

source_name: Mock infected WT BMDMs

value: bone marrow derived macrophage

value: wild type


title: Wildtype Mock1

description: Biological replicate 1

value: mock

value: Pooled from all samples used


title: DEN_435T5

status: Public on Mar 31 2012

city: Ulm

first: Hans

middle: A

last: Kestler

address: Albert-Einstein-Allee 11

department: Research Group Bioinformatics and Systems Biology

country: Germany

institute: University of Ulm

description: DEN treated

hyb_protocol: 7-9ug Cy5-labelled DNA and Cy3 labelled DNA from liver tumor and kidney, respectively (specific activity >25.0 pmol Cy3/µg DNA; >20 pmol Cy5/µg DNA) was heated at 95°C for 3 minutes and incubated at 37°C for 30minutes containing 1x Agilent hybridisation buffer and 1x Agilent blocking agent following the manufacturer’s protocol. Afterwards, solution was hybridized to Agilent Mouse 4x44K Microarrays (G4426B) or 1x244K (G4415GA) for 40 hours at 65°C in a rotating hybridization oven. After hybridization, microarrays were washed 5 minutes at room temperature with Oligo aCGH Wash Buffer 1 (Agilent), 1 minute with 37°C Oligo aCGH Wash buffer 2 (Agilent) and 30 seconds with Acetonitril.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA microarray Scanner G2505B (5micron) with the the Agilent Scan Control Version A.8.4.1 .

data_processing: The scanned images were analyzed with Feature Extraction Software 10.7.3.1 (Agilent). Columns are scaled to have the same median, R-package limma.

source_name: DEN induced liver tumor (HCC), mTERC G3-/-

label_protocol: Cyanine-5 (Cy5) labeled DNA tumor DNA and Cyanine-3 (Cy3) labeled kidney DNA was prepared from 1ug Alu/RSA digested genomic DNA using the Agilent Genomic Labeling Kit PLUS (Agilent) according to the manufacturer's protocol. Dye incorporation and DNA yield were checked with a NanoPhotometer

growth_protocol: mice were kept in a pathogen-free environment

extract_protocol: DNA was isolated using Phenol/Chloroform extraction. DNA was quantified using a NanoPhotometer.

treatment_protocol: mice (group: DEN induced liver tumors) were treated at day 15 with DEN (i.p.; 10µg/g bodyweight)

tag: tissue

value: HCC

tag: strain

value: mTERC-/- G3


title: DEN_451T1

description: DEN treated


title: DEN_452T7

description: DEN treated


title: DEN_LT634T2

description: DEN treated

source_name: DEN induced liver tumor (HCC), TTD-

value: TTD-


title: 14 Atrium1 vs. pooled reference

description: 14C Atrial biological replicate 1 of 4 compared to pooled reference.

source_name: fish 1 at 14C, atrium

tag: acclimation temperature (celsius)

source_name: Pooled reference of total RNA from all experimental samples

tag: sample type


title: DEN_438T1

description: DEN treated

tag: genotype


title: DEN_457T7

description: DEN treated


title: ER-alpha ChIP, untreated, rep3

city: Dallas

first: W. Lee

last: Kraus

state: TX

address: 5323 Harry Hines Blvd.

institute: UT Southwestern Medical Center

description: Custom-made rabbit polyclonal ERa antibody: Kraus WL, Kadonaga JT, Genes Dev. 1998 Feb 1;12(3): 331-42 (PMID 9450928).

hyb_protocol: See the NimbleGen website.

scan_protocol: See the NimbleGen website.

data_processing: Genomic data analysis was performed using the statistical programming language R (R Development Core Team). All data processing scripts are available upon request. The log2 ratio data from each of the arrays was subjected to lowess normalization.

source_name: ER-alpha ChIP, untreated

label_protocol: See the NimbleGen website.

extract_protocol: MCF-7 breast cancer cells were grown to ~80 to 90% confluence, cross-linked with 10mM DMS in PBS for 10min. at room temp., and 1% paraformaldehyde in PBS for 10 min. at 37°C, and quenched in 125 mM glycine in PBS for 5 min at 4°C. The cells were collected by centrifugation and sonicated in lysis buffer (0.5% SDS, 10 mM EDTA, 50 mM Tris•HCl, pH 7.9, 1x protease inhibitor cocktail) to generate chromatin fragments of ~500 bp in length. The material was clarified by centrifugation, diluted 10-fold in dilution buffer (0.5% Triton X-100, 2 mM EDTA, 150 mM NaCl, 20 mM Tris•HCl, pH 7.9, 1x protease inhibitor cocktail), and pre-cleared with protein A-agarose beads. The pre-cleared, chromatin-containing supernatant was used in immunoprecipitation reactions with antibodies against ER-alpha. The immunoprecipitated genomic DNA was cleared of protein and residual RNA by digestion with proteinase K and RNase H, respectively. The DNA was then extracted with phenol:chloroform:isoamyl alcohol and precipitated with ethanol.

tag: cell line

tag: cell type

value: breast cancer cells

tag: treatment

value: ethanol control

tag: chip antibody

value: custom-made rabbit polyclonal ERa antibody

source_name: Input, untreated

extract_protocol: MCF-7 breast cancer cells were grown to ~80 to 90% confluence, cross-linked with 10mM DMS in PBS for 10min. at room temp., and 1% paraformaldehyde in PBS for 10 min. at 37°C, and quenched in 125 mM glycine in PBS for 5 min at 4°C. The cells were collected by centrifugation and sonicated in lysis buffer (0.5% SDS, 10 mM EDTA, 50 mM Tris•HCl, pH 7.9, 1x protease inhibitor cocktail) to generate chromatin fragments of ~500 bp in length. The material was clarified by centrifugation, diluted 10-fold in dilution buffer (0.5% Triton X-100, 2 mM EDTA, 150 mM NaCl, 20 mM Tris•HCl, pH 7.9, 1x protease inhibitor cocktail), and pre-cleared with protein A-agarose beads. An aliquot of the pre-cleared, chromatin-containing supernatant taken as an input sample. The input DNA was cleared of protein and residual RNA by digestion with proteinase K and RNase H, respectively. The DNA was then extracted with phenol:chloroform:isoamyl alcohol and precipitated with ethanol.


title: ER-alpha ChIP, estrogen treated, rep3

source_name: ER-alpha ChIP, estrogen treated

source_name: Input, estrogen treated


title: LT496Liver

description: Doxycycline

hyb_protocol: 1.65 µg of Cy3-labelled cRNA (specific activity >8.0 pmol Cy3/µg cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 55 µl containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturer’s protocol. On completion of the fragmentation reaction, 55 µl of 2x Agilent HiRPM hybridization buffer was added to the fragmentation mixture and hybridized to Agilent Mouse GE 4x44K V2 Microarrays (G4846A) for 17 hours at 65°C in a rotating hybridization oven. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent), 1 minute with 37°C GE Wash buffer 2 (Agilent) and 30 seconds with Acetonitril.

data_processing: The scanned images were analyzed with Feature Extraction Software 10.7.3.1 (Agilent). The data was preprocessed according to Agilent's Genespring software standard workflow. Gene expression levels were background corrected and signals for duplicated probes were summarized by geometric mean of non-compromised probes. After log2 transformation, a percentile shift normalization at the 75% level and a baseline shift to the median baseline of all probes was performed.

source_name: Doxycycline injected liver

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp Labeling Kit (Agilent) according to the manufacturer's protocol, followed by RNAeasy column purification (QIAGEN, Valencia, CA). Dye incorporation and cRNA yield were checked with a NanoPhotometer

extract_protocol: RNA was isolated using the RNzol following the manufacturer's protocol. RNA was quantified using a NanoPhotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies).

value: Liver


title: LT403Liver

description: Doxycycline


title: DEN_LT684T1

description: DEN treated

source_name: DEN induced liver tumor (HCC), Trp53 wt


title: DEN_LT630T1

description: DEN treated

source_name: DEN induced liver tumor (HCC), TTD+

value: TTD+


title: DEN_449T1

description: DEN treated


title: DEN_LT676T3

description: DEN treated


title: DEN_LT752T1

description: DEN treated


title: LT456Liver

description: Doxycycline


title: DEN_LT697T3

description: DEN treated


title: LT555Liver

description: Doxycycline


title: DEN_LT752T1

description: DEN treated


title: DEN_LT638T1

description: DEN treated


title: DEN_LT676T3

description: DEN treated


title: LT407Liver

description: Doxycycline


title: DEN_LT634T1

description: DEN treated


title: DEN_LT630T1

description: DEN treated


title: DEN_LT697T3

description: DEN treated


title: PAO1 persisters treated with BF8 at 1 ug/mL for 1 hour F2

status: Public on Mar 24 2012

city: Syracuse

first: Jiachuan

last: Pan

state: NY

address: 121 Link Hall

institute: Syracuse Unievrsity

description: Gene expression data from persister cells treated by BF8

hyb_protocol: Fragmented cDNA was hybridized on the Affymetrix P aeroginosa Genome Array for 16 h at 50oC. Arrays were washed and stained in an Affymetrix Fluidics Station 450 using the modified Flex FS450_0002 fluidics protocol as specified in the Prokaryotic Target Preparation Protocol

scan_protocol: Arrays were scanned with an Affymetrix GeneChip Scanner 7G Plus

data_processing: GeneChip Operating Software (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method, genes with a p-value of less than 0.0025 or greater than 0.9975 were considered statistically significant based on Wilcoxon signed rank test and Tukey Byweight, labeled as I and D in the attached txt file. To ensure the significance of microarray data, an additional criterion was applied to only select the genes with an expression ratio of 2 or high from this group as induced and repressed genes.

organism: Pseudomonas aeruginosa PAO1

label_protocol: Biotinylated cDNA was prepared from 10 ug total RNA using the Prokaryotic Target Preparation protocol in the Affymetrix Expression Analysis Technical Manual

growth_protocol: PAO1 was inoculated in 100 mL LB and grown for 18 h (200 rpm, 37oC). Persister cells were isolated by lysing the normal cells with 200 ug/mL Ciprofloxacin (3.5h, 200 rpm, 37oC), followed by centrifugation and washing with 0.85% NaCl buffer.

extract_protocol: RNeasy Mini Kit (Qiagen, Austin, TX, USA) with on-column DNase treatment (RNase-Free DNase Set, Qiagen).

treatment_protocol: The isolated persisters were incubated in 0.85% NaCl buffer for 1 h (200 rpm, 37oC) with or without 1 ug/mL BF8.

value: Persister cells

value: BF8 at 1 ug/mL for 1 hour


title: control peritoneal macrophages #2

status: Public on Mar 28 2012

city: Birmingham

first: Gang

last: Liu

state: Alabama

address: 901 19TH ST S

department: Medicine

institute: University of Alabama at Birmingham

description: non-treated

hyb_protocol: Following fragmentation, hybridization occurred for 16 hr at 45C on GeneChip Mouse Gene ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: Affymetrix Gene Chip Scanner 3000 7G

data_processing: Data were processed using GeneSpring v11 software using the summarization algorithm RMA16 and quantile normalized with baseline subtraction on the median of all samples.

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol.

growth_protocol: DMEM containing 10% FBS, 37 degree and 5% CO2

extract_protocol: Qiagen RNAeasy kit

treatment_protocol: control, or 1 ug/mL PAM for 24h for PAM treated macrophages #1 and 2, or 2 ug/mL poly I:C for 24h for poly I:C treated macrophages #1 and 2.

value: peritoneal macrophages

tag: agent

value: control


title: DEN_LT627T1

description: DEN treated


title: PAO1 persisters treated with BF8 at 1 ug/mL for 1 hour F3


title: Human normal pituitary -N4

status: Public on Mar 08 2012

city: Los Angeles

first: Yunguang

last: Tong

address: 8700 Beverly BLVD

institute: Cedars-Sinai Medical Center

hyb_protocol: According to the manufacturer's instructions. See Moreno CS et al (2005). Cancer Res 65(22):10214-10222.

data_processing: RMA

label: Biotin

source_name: human normal pituitary

label_protocol: Biotin-labeled cRNA was produced with Enzo BioArray High Yield RNA Transcription Labeling kit according to the manufacturer's instructions. See Moreno CS et al (2005). Cancer Res 65(22):10214-10222.

extract_protocol: Briefly,total RNA (100 ug) was purified, using the RNeasy Mini Kit (Cat.No.74104, QIAGEN Inc., Valencia, CA) with minor modifications. Total RNA was eluted twice with 50 ul of 65 C DEPC-treated water.

tag: gender

value: Male

tag: age (y)

value: normal pituitary


title: DEN_LT644T1

description: DEN treated


title: ER-alpha ChIP, estrogen treated, technical rep1 and rep2


title: poly I:C treated macrophages #2

description: treated with poly I:C

value: poly I:C


title: DEN_LT628T1

description: DEN treated


title: Human normal pituitary -N1

scan_protocol: According to the manufacturer's instructions. See Moreno CS et al (2005). Cancer Res 65(22):10214-10222.


title: DEN_LT598T1

description: DEN treated


title: DEN_LT684T9

description: DEN treated


title: DEN_LT638T2

description: DEN treated


title: DEN_LT637T1

description: DEN treated


title: DEN_LT630T2

description: DEN treated


title: PAM treated macrophages #1

description: treated with PAMCSK3

value: PAM


title: PAM treated macrophages #2

description: treated with PAMCSK4


title: PAO1 persisters treated with BF8 at 1 ug/mL for 1 hour F1


title: Upf1 siRNA treated Replication 2

status: Public on Feb 28 2012

city: Seoul

first: Hana

last: Cho

address: Anam 5ga, Sungbukku

department: School of Life Sciences and Biotechnology

country: South Korea

institute: Korea University

description: replicate 2

hyb_protocol: 750 ng of labeled cRNA samples were hybridized to each human-8 expression bead array for 16-18 h at 58°C, according to the manufacturer's instructions (Illumina, Inc., San Diego, USA).

scan_protocol: Detection of array signal was carried out using Amersham fluorolink streptavidin-Cy3 (GE Healthcare Bio-Sciences, Little Chalfont, UK) following the bead array manual. Arrays were scanned with an Illumina bead array Reader confocal scanner according to the manufacturer's instructions. Array data export processing and analysis was performed using Illumina BeadStudio v3.1.3(Gene Expression Module v3.3.8).

data_processing:
Array data export processing and analysis was performed using Illumina BeadStudio v3.1.3  (Gene Expression Module v3.3.8). The comparative analysis between Control and Test samples was carried out using fold-change.
Array data were filtered by detection p-value < 0.05 in at least 50% samples (we applied a filtering criterion for data analysis; higher signal value was required to obtain a detection p-value < 0.05). Selected probe(13276 probes) signal value was transformed by logarithm and normalized by quantile method.

source_name: Upf1 siRNA treated Replication 2

label_protocol: Total RNA was amplified and purified using the Ambion Illumina RNA amplification kit (Ambion, Austin, USA) to yield biotinylated cRNA according to the manufacturer’s instructions. Briefly, 550 ng of total RNA was reverse-transcribed to cDNA using a T7 oligo(dT) primer. Second-strand cDNA was synthesized, in vitro transcribed, and labeled with biotin-NTP. After purification, the cRNA was quantified using the ND-1000 Spectrophotometer (NanoDrop, Wilmington, USA).

growth_protocol: HeLa cells were grown in Dulbecco’s Modified Eagle’s Medium (Lonza) containing 10% fetal bovine serum (Lonza).

extract_protocol: Total RNA was extracted using Trizol (Invitrogen Life Technologies, Carlsbad, USA), purified using RNeasy columns (Qiagen, Valencia, USA) according to the manufacturers’ protocol. After processing with DNase digestion, clean-up procedures, RNA samples were quantified, aliquot and stored at -80°C until use. For quality control, RNA purity and integrity were evaluated by denaturing gel electrophoresis, OD 260/280 ratio, and analyzed on Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, USA).

treatment_protocol: Cells were transiently transfected with the indicated in vitro-synthesized siRNA (Invitrogen)

value: HeLa

value: Upf1 siRNA


title: PNRC2 siRNA treated Replication 2

description: replicate 2

source_name: PNRC2 siRNA treated Replication 2

value: PNRC2 siRNA


title: poly I:C treated macrophages #1

description: treated with poly I:C


title: Human normal pituitary -N6

value: Female


title: DEN_LT626T1

description: DEN treated

value: HCC


title: control peritoneal macrophages #1

description: non-treated


title: DEN_LT634T1

description: DEN treated

value: TTD-


title: DEN_LT750T1

description: DEN treated


title: DEN_LT634T11

description: DEN treated


title: 95:24:00_UNP-March22_human_liver_EAM5544

status: Public on Feb 10 2012

city: Seattle

last: Katze

state: WA

address: Rosen Building 960 Republican St.

department: Microbiology

institute: University of Washington

description: Agilent Oligo Hyb

hyb_protocol: The Agilent Two-Color Microarray-Based Gene Expression Analysis Protocol was followed for hybridization and array washing. Two hundred ng of each RNA sample was hybridized to one Agilent 22K Human oligo array.

scan_protocol: Scanned on an Agilent Scanner G2505B US23502338. Images were quantified using Agilent Feature Extraction Software (version A.8.1.1.1).

data_processing: The limma package was used. Background correction was performed (method=normexp, offset=1). Data was normalized within arrays with the loess method, then normalized between arrays with the quantile normalization method, and then log2 transformed.

source_name: 95:24, human liver, Cy3

label_protocol: The Agilent Two-Color Microarray-Based Gene Expression Analysis Protocol was followed for the Cy3-cDNA and Cy5-cDNA probe preparation.

extract_protocol: Biopsy specimens were disrupted in TRIzol reagent (Life Technologies, Carlsbad, CA) using a Polytron homogenizer (PowerGene 700; Fisher Scientific, Pittsburgh, PA).  Total RNA was isolated according to the manufacturer’s protocol.  All total RNA samples were amplified using the RiboAmp RNA Amplification Kit (Arcturus/MDS, Mountain View, CA).  The quality of amplified RNA was determined by capillary electrophoresis using an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

treatment_protocol: PCT study Utah Normal Pool (UNP): Liver biopsies used to compare transcriptional profiles of responders (with sustained virologic response:SVR) vs. non-responders to IFN treatment during HCV infection.

value: stage 3 fibrosis

value: liver

tag: patient/unp identifier

source_name: UNP-March22, human liver, Cy5

value: normal


title: 417:73_UNP-April 2008_human_liver_EAM7453

description: Agilent Oligo Hyb

source_name: 417:73, human liver, Cy3

value: HCV-infected

source_name: UNP-April 2008, human liver, Cy5

value: UNP-April 2008


title: 682:110_UNP-April 2008_human_liver_EAM7457

description: Agilent Oligo Hyb

source_name: 682:110, human liver, Cy3


title: Control siRNA treated Replication 2

description: replicate 2

source_name: Control siRNA treated Replication 2

value: Control siRNA


title: DEN_LT682T10

description: DEN treated

source_name: DEN induced liver tumor (HCC), TTD-


title: Upf1 siRNA treated Replication 1

description: replicate 1

source_name: Upf1 siRNA treated Replication 1


title: UNP-March22_8:12_human_liver_EAM5506

description: Agilent Oligo Hyb

source_name: UNP-March22, human liver, Cy3

source_name: 8:12, human liver, Cy5

value: HCV-infected stage 0


title: LT503Liver

description: Doxycycline

value: Liver


title: PNRC2 siRNA treated Replication 1

description: replicate 1

source_name: PNRC2 siRNA treated Replication 1


title: 154:12:00_UNP-Nov 7_human_liver_EAM5146

description: Agilent Oligo Hyb

source_name: 154:12, human liver, Cy3

source_name: UNP-Nov 7, human liver, Cy5

value: UNP-Nov 7


title: UNP-April 2008_682:110_human_liver_EAM7455

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 682:110, human liver, Cy5


title: UNP-April 2008_682:110_human_liver_EAM7456

description: Agilent Oligo Hyb


title: UNP-March22_393:6_human_liver_EAM5732

description: Agilent Oligo Hyb

source_name: 393:6, human liver, Cy5


title: 417:73_UNP-April 2008_human_liver_EAM7454

description: Agilent Oligo Hyb


title: UNP-March22_8:12_human_liver_EAM5507

description: Agilent Oligo Hyb


title: 393:06:00_UNP-March22_human_liver_EAM5734

description: Agilent Oligo Hyb

source_name: 393:6, human liver, Cy3


title: UNP-Nov 7_480:12_human_liver_EAM5139

description: Agilent Oligo Hyb

source_name: UNP-Nov 7, human liver, Cy3

source_name: 480:12, human liver, Cy5


title: UNP-March22_95:24_human_liver_EAM5543

description: Agilent Oligo Hyb

source_name: 95:24, human liver, Cy5

value: HCV-infected stage 3 fibrosis


title: 480:12:00_UNP-Nov 7_human_liver_EAM5141

description: Agilent Oligo Hyb

source_name: 480:12, human liver, Cy3


title: UNP-March22_208:24_human_liver_EAM5503

description: Agilent Oligo Hyb

source_name: 208:24, human liver, Cy5


title: Control siRNA treated Replication 1

description: replicate 1

source_name: Control siRNA treated Replication 1


title: 208:24:00_UNP-March22_human_liver_EAM5504

description: Agilent Oligo Hyb

source_name: 208:24, human liver, Cy3

source_name: UNP-March22, human liver, Cy5


title: UNP-March22_95:24_human_liver_EAM5542

description: Agilent Oligo Hyb

source_name: UNP-March22, human liver, Cy3


title: 208:24:00_UNP-March22_human_liver_EAM5505

description: Agilent Oligo Hyb


title: UNP-Nov 7_154:12_human_liver_EAM5144

description: Agilent Oligo Hyb

source_name: 154:12, human liver, Cy5


title: UNP-Nov 7_154:12_human_liver_EAM5143

description: Agilent Oligo Hyb


title: 95:24:00_UNP-March22_human_liver_EAM5545

description: Agilent Oligo Hyb

source_name: 95:24, human liver, Cy3


title: 65:39:00_UNP-April 2008_human_liver_EAM7415

description: Agilent Oligo Hyb

source_name: 65:39, human liver, Cy3

source_name: UNP-April 2008, human liver, Cy5


title: 8:12_UNP-March22_human_liver_EAM5509

description: Agilent Oligo Hyb

source_name: 8:12, human liver, Cy3


title: UNP-December 2007_671:24_human_liver_EAM7284

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy3

value: UNP-December 2007

source_name: 671:24, human liver, Cy5


title: UNP-April 2008_385:36_human_liver_EAM7432

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 385:36, human liver, Cy5


title: UNP-April 2008_65:39_human_liver_EAM7414

description: Agilent Oligo Hyb

source_name: 65:39, human liver, Cy5


title: UNP-January 20_3:6_human_liver_EAM5301

description: Agilent Oligo Hyb

source_name: UNP-January 20, human liver, Cy3

value: UNP-January 20

source_name: 3:6, human liver, Cy5


title: UNP-Nov 7_480:12_human_liver_EAM5140

description: Agilent Oligo Hyb

source_name: UNP-Nov 7, human liver, Cy3

source_name: 480:12, human liver, Cy5


title: 385:36:00_UNP-April 2008_human_liver_EAM7433

description: Agilent Oligo Hyb

source_name: 385:36, human liver, Cy3


title: UNP-March22_393:6_human_liver_EAM5733

description: Agilent Oligo Hyb

source_name: 393:6, human liver, Cy5


title: 8:12_UNP-March22_human_liver_EAM5508

description: Agilent Oligo Hyb

source_name: UNP-March22, human liver, Cy5


title: UNP-January 20_3:6_human_liver_EAM5302

description: Agilent Oligo Hyb


title: 65:39:00_UNP-April 2008_human_liver_EAM7416

description: Agilent Oligo Hyb


title: 637:24:00_UNP-December 2007_human_liver_EAM7283

description: Agilent Oligo Hyb

source_name: 637:24, human liver, Cy3

source_name: UNP-December 2007, human liver, Cy5


title: 480:12:00_UNP-Nov 7_human_liver_EAM5142

description: Agilent Oligo Hyb

source_name: 480:12, human liver, Cy3

source_name: UNP-Nov 7, human liver, Cy5


title: 671:24:00_UNP-December 2007_human_liver_EAM7286

description: Agilent Oligo Hyb

source_name: 671:24, human liver, Cy3


title: UNP-March 9_113:12_human_liver_EAM5483

description: Agilent Oligo Hyb

source_name: UNP-March 9, human liver, Cy3

value: UNP-March 9

source_name: 113:12, human liver, Cy5


title: 671:24:00_UNP-December 2007_human_liver_EAM7287

description: Agilent Oligo Hyb


title: UNP-December 2007_671:24_human_liver_EAM7285

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy3

source_name: 671:24, human liver, Cy5


title: ER-alpha ChIP, untreated, technical rep1 and rep2

source_name: ER-alpha ChIP, untreated

value: breast cancer cells

value: ethanol control

value: custom-made rabbit polyclonal ERa antibody

source_name: Input, untreated


title: 599:12:00_UNP-March 9_human_liver_EAM5480

description: Agilent Oligo Hyb

source_name: 599:12, human liver, Cy3

source_name: UNP-March 9, human liver, Cy5


title: 599:12:00_UNP-March 9_human_liver_EAM5481

description: Agilent Oligo Hyb


title: UNP-March 9_113:12_human_liver_EAM5482

description: Agilent Oligo Hyb


title: 393:12:00_UNP-March22_human_liver_EAM5738

description: Agilent Oligo Hyb

source_name: 393:12, human liver, Cy3


title: 12:06_UNP-Nov 7_human_liver_EAM5319

description: Agilent Oligo Hyb

source_name: 12:6, human liver, Cy3


title: UNP-January 20_14:24_human_liver_EAM5322

description: Agilent Oligo Hyb

source_name: UNP-January 20, human liver, Cy3

source_name: 14:24, human liver, Cy5


title: UNP-April 2008_523:3_human_liver_EAM7422

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 523:3, human liver, Cy5


title: 393:12:00_UNP-March22_human_liver_EAM5739

description: Agilent Oligo Hyb

source_name: UNP-March22, human liver, Cy5


title: UNP-April 2008_385:36_human_liver_EAM7431

description: Agilent Oligo Hyb

source_name: 385:36, human liver, Cy5


title: 84:24:00_UNP-March 9_human_liver_EAM5493

description: Agilent Oligo Hyb

source_name: 84:24, human liver, Cy3


title: 388:12(2)_UNP-January 20_human_liver_EAM5328

description: Agilent Oligo Hyb

source_name: 388:12(2), human liver, Cy3

source_name: UNP-January 20, human liver, Cy5


title: 113:12:00_UNP-March 9_human_liver_EAM5484

description: Agilent Oligo Hyb

source_name: 113:12, human liver, Cy3


title: UNP-December 2007_667:3_human_liver_EAM7320

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy3

source_name: 667:3, human liver, Cy5


title: 68:27:00_UNP-April 2008_human_liver_EAM7419

description: Agilent Oligo Hyb

source_name: 68:27, human liver, Cy3

source_name: UNP-April 2008, human liver, Cy5


title: 84:24:00_UNP-March 9_human_liver_EAM5492

description: Agilent Oligo Hyb

source_name: UNP-March 9, human liver, Cy5


title: UNP-January 20_148:26_human_liver_EAM5374

description: Agilent Oligo Hyb

source_name: 148:26, human liver, Cy5

value: HCV-infected stage 3


title: UNP-March22_208:24_human_liver_EAM5502

description: Agilent Oligo Hyb

source_name: UNP-March22, human liver, Cy3

source_name: 208:24, human liver, Cy5


title: UNP-March 9_84:24_human_liver_EAM5491

description: Agilent Oligo Hyb

source_name: UNP-March 9, human liver, Cy3

source_name: 84:24, human liver, Cy5


title: UNP-April 2008_523:3_human_liver_EAM7421

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 523:3, human liver, Cy5


title: 68:27:00_UNP-April 2008_human_liver_EAM7420

description: Agilent Oligo Hyb


title: UNP-March22_393:12_human_liver_EAM5737

description: Agilent Oligo Hyb

source_name: 393:12, human liver, Cy5


title: UNP-March22_393:12_human_liver_EAM5736

description: Agilent Oligo Hyb


title: UNP-January 20_14:24_human_liver_EAM5321

description: Agilent Oligo Hyb

source_name: UNP-January 20, human liver, Cy3

source_name: 14:24, human liver, Cy5


title: 12:06_UNP-Nov 7_human_liver_EAM5320

description: Agilent Oligo Hyb

source_name: 12:6, human liver, Cy3

source_name: UNP-Nov 7, human liver, Cy5


title: 393:06:00_UNP-March22_human_liver_EAM5735

description: Agilent Oligo Hyb

source_name: 393:6, human liver, Cy3

source_name: UNP-March22, human liver, Cy5


title: 14:24_UNP-January 20_human_liver_EAM5324

description: Agilent Oligo Hyb

source_name: 14:24, human liver, Cy3

source_name: UNP-January 20, human liver, Cy5


title: UNP-January 20_388:12(2)_human_liver_EAM5326

description: Agilent Oligo Hyb

source_name: 388:12(2), human liver, Cy5


title: UNP-March 9_84:24_human_liver_EAM5490

description: Agilent Oligo Hyb


title: 388:12(2)_UNP-January 20_human_liver_EAM5327

description: Agilent Oligo Hyb

source_name: 388:12(2), human liver, Cy3


title: UNP-Nov 7_12:6_human_liver_EAM5318

description: Agilent Oligo Hyb

source_name: UNP-Nov 7, human liver, Cy3

source_name: 12:6, human liver, Cy5


title: UNP-January 20_388:12(2)_human_liver_EAM5325

description: Agilent Oligo Hyb


title: DEN_LT634T4

description: DEN treated

source_name: DEN induced liver tumor (HCC), TTD-

value: HCC

value: TTD-


title: 148:26:00_UNP-January 20_human_liver_EAM5376

description: Agilent Oligo Hyb

source_name: 148:26, human liver, Cy3

value: liver

value: normal


title: 190:06:00_UNP-January 20_human_liver_EAM5312

description: Agilent Oligo Hyb

source_name: 190:6, human liver, Cy3

value: HCV-infected


title: 148:26:00_UNP-January 20_human_liver_EAM5377

description: Agilent Oligo Hyb


title: UNP-January 20_410:24_human_liver_EAM5314

description: Agilent Oligo Hyb

source_name: 410:24, human liver, Cy5


title: UNP-January 20_190:6_human_liver_EAM5309

description: Agilent Oligo Hyb

source_name: 190:6, human liver, Cy5


title: UNP-January 20_545:96_human_liver_EAM5378

description: Agilent Oligo Hyb

source_name: UNP-January 20, human liver, Cy3

source_name: 545:96, human liver, Cy5


title: UNP-Nov 7_12:6_human_liver_EAM5317

description: Agilent Oligo Hyb


title: UNP-January 20_190:6_human_liver_EAM5310

description: Agilent Oligo Hyb


title: 545:96_UNP-January 20_human_liver_EAM5380

description: Agilent Oligo Hyb

source_name: 545:96, human liver, Cy3


title: 190:06:00_UNP-January 20_human_liver_EAM5311

description: Agilent Oligo Hyb


title: 3:06_UNP-January 20_human_liver_EAM5303

description: Agilent Oligo Hyb

source_name: 3:6, human liver, Cy3


title: UNP-January 20_61:18_human_liver_EAM5306

description: Agilent Oligo Hyb

source_name: 61:18, human liver, Cy5


title: 410:24:00_UNP-January 20_human_liver_EAM5316

description: Agilent Oligo Hyb

source_name: 410:24, human liver, Cy3


title: 61:18:00_UNP-January 20_human_liver_EAM5307

description: Agilent Oligo Hyb

source_name: 61:18, human liver, Cy3


title: 410:24:00_UNP-January 20_human_liver_EAM5315

description: Agilent Oligo Hyb

source_name: UNP-January 20, human liver, Cy5


title: 545:96_UNP-January 20_human_liver_EAM5381

description: Agilent Oligo Hyb


title: UNP-January 20_148:26_human_liver_EAM5375

description: Agilent Oligo Hyb

source_name: 148:26, human liver, Cy5


title: 61:18:00_UNP-January 20_human_liver_EAM5308

description: Agilent Oligo Hyb


title: 3:06_UNP-January 20_human_liver_EAM5304

description: Agilent Oligo Hyb


title: UNP-January 20_61:18_human_liver_EAM5305

description: Agilent Oligo Hyb


title: UNP-January 20_410:24_human_liver_EAM5313

description: Agilent Oligo Hyb


title: UNP-January 20_545:96_human_liver_EAM5379

description: Agilent Oligo Hyb


title: UNP-March 9_55:24_human_liver_EAM5487

description: Agilent Oligo Hyb

source_name: UNP-March 9, human liver, Cy3

source_name: 55:24, human liver, Cy5


title: UNP-March 9_599:12_human_liver_EAM5466

description: Agilent Oligo Hyb

source_name: 599:12, human liver, Cy5


title: 113:12:00_UNP-March 9_human_liver_EAM5485

description: Agilent Oligo Hyb

source_name: 113:12, human liver, Cy3

source_name: UNP-March 9, human liver, Cy5


title: 55:24:00_UNP-March 9_human_liver_EAM5488

description: Agilent Oligo Hyb

source_name: 55:24, human liver, Cy3


title: UNP-March 9_599:12_human_liver_EAM5467

description: Agilent Oligo Hyb


title: 55:24:00_UNP-March 9_human_liver_EAM5489

description: Agilent Oligo Hyb


title: UNP-April 2008_553:88_human_liver_EAM7459

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

value: UNP-April 2008

source_name: 553:88, human liver, Cy5


title: UNP-March 9_55:24_human_liver_EAM5486

description: Agilent Oligo Hyb


title: 682:110_UNP-April 2008_human_liver_EAM7458

description: Agilent Oligo Hyb

source_name: 682:110, human liver, Cy3

source_name: UNP-April 2008, human liver, Cy5


title: 553:88_UNP-April 2008_human_liver_EAM7461

description: Agilent Oligo Hyb

source_name: 553:88, human liver, Cy3


title: UNP-April 2008_553:88_human_liver_EAM7460

description: Agilent Oligo Hyb


title: 489:12:00_UNP-March22_human_liver_EAM5521

description: Agilent Oligo Hyb

source_name: 489:12, human liver, Cy3

source_name: UNP-March22, human liver, Cy5


title: UNP-Sept 19_208:6_human_liver_EAM6086

description: Agilent Oligo Hyb

source_name: UNP-Sept 19, human liver, Cy3

value: UNP-Sept 19

source_name: 208:6, human liver, Cy5


title: 53:12:00_UNP-March22_human_liver_EAM5517

description: Agilent Oligo Hyb

source_name: 53:12, human liver, Cy3


title: 53:12:00_UNP-March22_human_liver_EAM5516

description: Agilent Oligo Hyb


title: 208:06:00_UNP-Sept 19_human_liver_EAM6087

description: Agilent Oligo Hyb

source_name: 208:6, human liver, Cy3

source_name: UNP-Sept 19, human liver, Cy5


title: 489:12:00_UNP-March22_human_liver_EAM5520

description: Agilent Oligo Hyb


title: UNP-June 7_190:3_human_liver_EAM5904

description: Agilent Oligo Hyb

source_name: UNP-June 7, human liver, Cy3

value: UNP-June 7

source_name: 190:3, human liver, Cy5


title: UNP-June 7_7:12_human_liver_EAM5770

description: Agilent Oligo Hyb

source_name: 7:12, human liver, Cy5


title: 190:03:00_UNP-June 7_human_liver_EAM5907

description: Agilent Oligo Hyb

source_name: 190:3, human liver, Cy3

source_name: UNP-June 7, human liver, Cy5


title: UNP pool (6/7,14, 8/22)_509:12_human_liver_EAM6041

description: Agilent Oligo Hyb

source_name: UNP pool (6/7,14, 8/22), human liver, Cy3

source_name: 509:12, human liver, Cy5


title: 443:06:00_UNP-June 7_human_liver_EAM5768

description: Agilent Oligo Hyb

source_name: 443:6, human liver, Cy3


title: 208:06:00_UNP-Sept 19_human_liver_EAM6088

description: Agilent Oligo Hyb


title: 553:88_UNP-April 2008_human_liver_EAM7462

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy5


title: 443:06:00_UNP-June 7_human_liver_EAM5769

description: Agilent Oligo Hyb


title: UNP-June 7_190:3_human_liver_EAM6018

description: Agilent Oligo Hyb


title: UNP-June 7_443:6_human_liver_EAM5766

description: Agilent Oligo Hyb

source_name: 443:6, human liver, Cy5


title: UNP-June 7_443:6_human_liver_EAM5767

description: Agilent Oligo Hyb


title: UNP-Sept 19_181:1_human_liver_EAM6089

description: Agilent Oligo Hyb

source_name: 181:1, human liver, Cy5


title: UNP-Sept 19_704:6_human_liver_EAM6029

description: Agilent Oligo Hyb

source_name: 704:6, human liver, Cy5


title: UNP-March22_53:12_human_liver_EAM5514

description: Agilent Oligo Hyb

source_name: UNP-March22, human liver, Cy3

source_name: 53:12, human liver, Cy5


title: UNP-Sept 19_704:6_human_liver_EAM6030

description: Agilent Oligo Hyb

source_name: UNP-Sept 19, human liver, Cy3


title: UNP-May 31_443:3_human_liver_EAM5740

description: Agilent Oligo Hyb

source_name: UNP-May 31, human liver, Cy3

value: UNP-May 31

source_name: 443:3, human liver, Cy5


title: 443:03:00_UNP-May 31_human_liver_EAM5742

description: Agilent Oligo Hyb

source_name: 443:3, human liver, Cy3

source_name: UNP-May 31, human liver, Cy5


title: 443:03:00_UNP-May 31_human_liver_EAM5743

description: Agilent Oligo Hyb


title: UNP-May 31_443:3_human_liver_EAM5741

description: Agilent Oligo Hyb


title: 704:06:00_UNP-Sept 19_human_liver_EAM6032

description: Agilent Oligo Hyb

source_name: 704:6, human liver, Cy3

source_name: UNP-Sept 19, human liver, Cy5


title: UNP-Sept 19_181:1_human_liver_EAM6090

description: Agilent Oligo Hyb


title: UNP-May 31_443-12_human_liver_EAM5744

description: Agilent Oligo Hyb

source_name: 443-12, human liver, Cy5


title: 95:04:00_UNP-June 14_human_liver_EAM5883

description: Agilent Oligo Hyb

source_name: 95:4, human liver, Cy3

source_name: UNP-June 14, human liver, Cy5

value: UNP-June 14


title: UNP-June 14_95:4_human_liver_EAM5882

description: Agilent Oligo Hyb

source_name: UNP-June 14, human liver, Cy3

source_name: 95:4, human liver, Cy5


title: UNP-May 2008_120:12_human_liver_EAM7491

description: Agilent Oligo Hyb

source_name: UNP-May 2008, human, Cy3

value: UNP-May 2008

source_name: 120:12, human liver, Cy5


title: UNP-May 2008_120:12_human_liver_EAM7492

description: Agilent Oligo Hyb


title: 523:06:00_UNP-May 31_human_liver_EAM5751

description: Agilent Oligo Hyb

source_name: 523:6, human liver, Cy3


title: 7:06_UNP-May 31_human_liver_EAM5760

description: Agilent Oligo Hyb

source_name: 7:6, human liver, Cy3


title: 39:12:00_UNP-June 7_human_liver_EAM5892

description: Agilent Oligo Hyb

source_name: 39:12, human liver, Cy3

source_name: UNP-June 7, human liver, Cy5


title: UNP-June 14_113:24_human_liver_EAM5893

description: Agilent Oligo Hyb

source_name: 113:24, human liver, Cy5


title: UNP-April 2008_457:73_human_liver_EAM7444

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 457:73, human liver, Cy5


title: UNP-June 7_39:12_human_liver_EAM5890

description: Agilent Oligo Hyb

source_name: UNP-June 7, human liver, Cy3

source_name: 39:12, human liver, Cy5


title: UNP-May 31_523-12_human_liver_EAM5752

description: Agilent Oligo Hyb

source_name: UNP-May 31, human liver, Cy3

source_name: 523-12, human liver, Cy5


title: UNP-May 31_523:6_human_liver_EAM5748

description: Agilent Oligo Hyb

source_name: 523:6, human liver, Cy5


title: UNP-May 2008_397:60_human_liver_EAM7494

description: Agilent Oligo Hyb

source_name: 397:60, human liver, Cy5


title: 181:12:00_UNP-Sept 20_human_liver_EAM6170

description: Agilent Oligo Hyb

source_name: 181:12, human liver, Cy3

source_name: UNP-Sept 20, human liver, Cy5

value: UNP-Sept 20


title: UNP-April 2008_460:86_human_liver_EAM7447

description: Agilent Oligo Hyb

source_name: 460:86, human liver, Cy5


title: UNP-May 2008_397:60_human_liver_EAM7493

description: Agilent Oligo Hyb

source_name: UNP-May 2008, human, Cy3


title: 457:73_UNP-April 2008_human_liver_EAM7445

description: Agilent Oligo Hyb

source_name: 457:73, human liver, Cy3

source_name: UNP-April 2008, human liver, Cy5


title: UNP-Sept 20_1064:5_human_liver_EAM6134

description: Agilent Oligo Hyb

source_name: UNP-Sept 20, human liver, Cy3

source_name: 1064:5, human liver, Cy5


title: 7:06_UNP-May 31_human_liver_EAM5761

description: Agilent Oligo Hyb

source_name: 7:6, human liver, Cy3

source_name: UNP-May 31, human liver, Cy5


title: 397:60_UNP-May 2008_human_EAM7495

description: Agilent Oligo Hyb

source_name: 397:60, human liver, Cy3

source_name: UNP-May 2008, human, Cy5


title: 523:06:00_UNP-May 31_human_liver_EAM5750

description: Agilent Oligo Hyb

source_name: 523:6, human liver, Cy3


title: UNP-May 31_523:6_human_liver_EAM5749

description: Agilent Oligo Hyb

source_name: UNP-May 31, human liver, Cy3


title: 95:04:00_UNP-June 14_human_liver_EAM5884

description: Agilent Oligo Hyb

source_name: 95:4, human liver, Cy3

source_name: UNP-June 14, human liver, Cy5


title: UNP-June 14_113:24_human_liver_EAM5894

description: Agilent Oligo Hyb

source_name: UNP-June 14, human liver, Cy3

source_name: 113:24, human liver, Cy5


title: UNP-May 31_7:6_human_liver_EAM5759

description: Agilent Oligo Hyb

source_name: 7:6, human liver, Cy5


title: 457:73_UNP-April 2008_human_liver_EAM7446

description: Agilent Oligo Hyb


title: 39:12:00_UNP-June 7_human_liver_EAM5891

description: Agilent Oligo Hyb

source_name: 39:12, human liver, Cy3

source_name: UNP-June 7, human liver, Cy5


title: 113:24:00_UNP-June 14_human_liver_EAM5895

description: Agilent Oligo Hyb

source_name: 113:24, human liver, Cy3


title: UNP-April 2008_457:73_human_liver_EAM7443

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 457:73, human liver, Cy5


title: UNP-Sept 20_181:12_human_liver_EAM6168

description: Agilent Oligo Hyb

source_name: UNP-Sept 20, human liver, Cy3

source_name: 181:12, human liver, Cy5


title: UNP-March22_489:6_human_liver_EAM5762

description: Agilent Oligo Hyb

source_name: UNP-March22, human liver, Cy3

source_name: 489:6, human liver, Cy5


title: 489:06:00_UNP-May 31_human_liver_EAM5764

description: Agilent Oligo Hyb

source_name: 489:6, human liver, Cy3

source_name: UNP-May 31, human liver, Cy5


title: UNP-May 31_7:6_human_liver_EAM5758

description: Agilent Oligo Hyb

source_name: UNP-May 31, human liver, Cy3


title: 65:73_UNP-May 2008_human_EAM7507

description: Agilent Oligo Hyb

source_name: 65:73, human liver, Cy3

source_name: UNP-May 2008, human, Cy5


title: UNP-March22_489:6_human_liver_EAM5763

description: Agilent Oligo Hyb


title: 65:73_UNP-May 2008_human_EAM7508

description: Agilent Oligo Hyb


title: UNP-May 31_489:12_human_liver_EAM5756

description: Agilent Oligo Hyb

source_name: 489:12, human liver, Cy5


title: UNP-June 7_381:6_human_liver_EAM5817

description: Agilent Oligo Hyb

source_name: UNP-June 7, human liver, Cy3

source_name: 381:6, human liver, Cy5


title: UNP-June 7_381:3_human_liver_EAM5813

description: Agilent Oligo Hyb

source_name: 381:3, human liver, Cy5


title: UNP-June 7_381:3_human_liver_EAM5812

description: Agilent Oligo Hyb


title: 489:06:00_UNP-May 31_human_liver_EAM5765

description: Agilent Oligo Hyb


title: UNP-May 31_489:12_human_liver_EAM5757

description: Agilent Oligo Hyb


title: 381:03:00_UNP-June 7_human_liver_EAM5814

description: Agilent Oligo Hyb

source_name: 381:3, human liver, Cy3

source_name: UNP-June 7, human liver, Cy5


title: 381:03:00_UNP-June 7_human_liver_EAM5815

description: Agilent Oligo Hyb


title: UNP-May 2008_65:73_human_liver_EAM7506

description: Agilent Oligo Hyb

source_name: UNP-May 2008, human, Cy3

source_name: 65:73, human liver, Cy5


title: UNP-June 7_381:6_human_liver_EAM5816

description: Agilent Oligo Hyb


title: UNP-May 2008_460:48_human_liver_EAM7497

description: Agilent Oligo Hyb

source_name: 460:48, human liver, Cy5


title: 460:48:00_UNP-May 2008_human_EAM7499

description: Agilent Oligo Hyb

source_name: 460:48, human liver, Cy3


title: 381:06:00_UNP-June 7_human_liver_EAM5818

description: Agilent Oligo Hyb

source_name: 381:6, human liver, Cy3


title: 1064:05:00_UNP-Sept 20_human_liver_EAM6135

description: Agilent Oligo Hyb

source_name: 1064:5, human liver, Cy3

source_name: UNP-Sept 20, human liver, Cy5


title: 39:00:00_UNP-8/22/06_human_liver_EAM6026

description: Agilent Oligo Hyb

source_name: 39:0, human liver, Cy3

source_name: UNP-8/22/06, human liver, Cy5


title: UNP-May 2008_460:48_human_liver_EAM7498

description: Agilent Oligo Hyb


title: UNP-8/22/06_39:0_human_liver_EAM6028

description: Agilent Oligo Hyb

source_name: UNP-8/22/06, human liver, Cy3

source_name: 39:0, human liver, Cy5


title: 55:06:00_UNP-June 14_human_liver_EAM5831

description: Agilent Oligo Hyb

source_name: 55:6, human liver, Cy3

source_name: UNP-June 14, human liver, Cy5


title: 397:60_UNP-May 2008_human_EAM7496

description: Agilent Oligo Hyb

source_name: 397:60, human liver, Cy3

source_name: UNP-May 2008, human, Cy5


title: UNP-June 14_662:4_human_liver_EAM5832

description: Agilent Oligo Hyb

source_name: UNP-June 14, human liver, Cy3

source_name: 662:4, human liver, Cy5


title: 460:48:00_UNP-May 2008_human_EAM7500

description: Agilent Oligo Hyb


title: UNP-June 14_55:6_human_liver_EAM5828

description: Agilent Oligo Hyb

source_name: 55:6, human liver, Cy5


title: 381:06:00_UNP-June 7_human_liver_EAM5819

description: Agilent Oligo Hyb

source_name: UNP-June 7, human liver, Cy5


title: 39:00:00_UNP-8/22/06_human_liver_EAM6027

description: Agilent Oligo Hyb


title: 1064:05:00_UNP-Sept 20_human_liver_EAM6136

description: Agilent Oligo Hyb


title: 662:04:00_UNP-June 14_human_liver_EAM5834

description: Agilent Oligo Hyb

source_name: 662:4, human liver, Cy3


title: 662:04:00_UNP-June 14_human_liver_EAM5835

description: Agilent Oligo Hyb


title: UNP-May 31_84:6_human_liver_EAM5885

description: Agilent Oligo Hyb

source_name: UNP-May 31, human liver, Cy3

source_name: 84:6, human liver, Cy5


title: UNP-June 7_599:6_human_liver_EAM5780

description: Agilent Oligo Hyb

source_name: UNP-June 7, human liver, Cy3

source_name: 599:6, human liver, Cy5


title: 84:06:00_UNP-March 9_human_liver_EAM5887

description: Agilent Oligo Hyb

source_name: 84:6, human liver, Cy3

source_name: UNP-March 9, human liver, Cy5

value: UNP-March 9


title: UNP-June 7_599:6_human_liver_EAM5781

description: Agilent Oligo Hyb


title: UNP-April 2008_68:73_human_liver_EAM7440

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 68:73, human liver, Cy5


title: UNP-April 2008_68:73_human_liver_EAM7439

description: Agilent Oligo Hyb


title: 599:06:00_UNP-June 7_human_liver_EAM5782

description: Agilent Oligo Hyb

source_name: 599:6, human liver, Cy3


title: UNP-June 7_39:12_human_liver_EAM5889

description: Agilent Oligo Hyb

source_name: 39:12, human liver, Cy5


title: UNP-Sept 20_61:3_human_liver_EAM6129

description: Agilent Oligo Hyb

source_name: UNP-Sept 20, human liver, Cy3

source_name: 61:3, human liver, Cy5


title: 599:06:00_UNP-June 7_human_liver_EAM5783

description: Agilent Oligo Hyb


title: UNP-May 31_84:6_human_liver_EAM5886

description: Agilent Oligo Hyb


title: 457:36:00_UNP-April 2008_human_liver_EAM7430

description: Agilent Oligo Hyb

source_name: 457:36, human liver, Cy3

source_name: UNP-April 2008, human liver, Cy5


title: 68:73_UNP-April 2008_human_liver_EAM7442

description: Agilent Oligo Hyb

source_name: 68:73, human liver, Cy3


title: 154:06:00_UNP-8/22/06_human_liver_EAM6022

description: Agilent Oligo Hyb

source_name: 154:6, human liver, Cy3

source_name: UNP-8/22/06, human liver, Cy5


title: 181:01:00_UNP-Sept 19_human_liver_EAM6091

description: Agilent Oligo Hyb

source_name: 181:1, human liver, Cy3

source_name: UNP-Sept 19, human liver, Cy5


title: UNP-Sept 20_1064:12_human_liver_EAM6146

description: Agilent Oligo Hyb

source_name: 1064:12, human liver, Cy5


title: 61:03:00_UNP-Sept 20_human_liver_EAM6131

description: Agilent Oligo Hyb

source_name: 61:3, human liver, Cy3

source_name: UNP-Sept 20, human liver, Cy5


title: UNP-8/22/06_154:6_human_liver_EAM6021

description: Agilent Oligo Hyb

source_name: UNP-8/22/06, human liver, Cy3

source_name: 154:6, human liver, Cy5


title: UNP-8/22/06_154:6_human_liver_EAM6020

description: Agilent Oligo Hyb


title: UNP-Sept 20_1064:12_human_liver_EAM6145

description: Agilent Oligo Hyb


title: 154:06:00_UNP-8/22/06_human_liver_EAM6023

description: Agilent Oligo Hyb


title: UNP-Sept 20_61:3_human_liver_EAM6130

description: Agilent Oligo Hyb


title: UNP-8/22/06_39:0_human_liver_EAM6024

description: Agilent Oligo Hyb

source_name: 39:0, human liver, Cy5


title: 181:01:00_UNP-Sept 19_human_liver_EAM6092

description: Agilent Oligo Hyb


title: 68:73_UNP-April 2008_human_liver_EAM7441

description: Agilent Oligo Hyb


title: 1064:12:00_UNP-Sept 20_human_liver_EAM6147

description: Agilent Oligo Hyb

source_name: 1064:12, human liver, Cy3


title: UNP pool (6/7,14, 8/22)_509:12_human_liver_EAM6042

description: Agilent Oligo Hyb

source_name: UNP pool (6/7,14, 8/22), human liver, Cy3

source_name: 509:12, human liver, Cy5


title: 480:09:00_UNP-Oct.24_human_liver_EAM6298

description: Agilent Oligo Hyb

source_name: 480:9, human liver, Cy3

value: HCV-infected/fibrosis

source_name: UNP-Oct.24, human liver, Cy5


title: UNP-Sept 20_1064:5_human_liver_EAM6133

description: Agilent Oligo Hyb

source_name: UNP-Sept 20, human liver, Cy3

source_name: 1064:5, human liver, Cy5


title: UNP-Sept 20_208:24(2)_human_liver_EAM6138

description: Agilent Oligo Hyb

source_name: 208:24(2), human liver, Cy5


title: 480:09:00_UNP-Oct.24_human_liver_EAM6299

description: Agilent Oligo Hyb


title: UNP-Sept 20_208:24(2)_human_liver_EAM6137

description: Agilent Oligo Hyb


title: 61:03:00_UNP-Sept 20_human_liver_EAM6132

description: Agilent Oligo Hyb


title: 208:24(2)_UNP-Sept 20_human_liver_EAM6140

description: Agilent Oligo Hyb

source_name: 208:24(2), human liver, Cy3


title: UNP-May 2008_682:95_human_liver_EAM7501

description: Agilent Oligo Hyb

source_name: UNP-May 2008, human, Cy3

source_name: 682:95, human liver, Cy5


title: 509:12:00_UNP pool (6/7,14, 8/22)_human_liver_EAM6043

description: Agilent Oligo Hyb

source_name: 509:12, human liver, Cy3

source_name: UNP pool (6/7,14, 8/22), human liver, Cy5


title: 208:24(2)_UNP-Sept 20_human_liver_EAM6139

description: Agilent Oligo Hyb

source_name: UNP-Sept 20, human liver, Cy5


title: UNP-May 2008_682:95_human_liver_EAM7502

description: Agilent Oligo Hyb


title: 682:95_UNP-May 2008_human_EAM7504

description: Agilent Oligo Hyb

source_name: 682:95, human liver, Cy3

source_name: UNP-May 2008, human, Cy5


title: 682:95_UNP-May 2008_human_EAM7503

description: Agilent Oligo Hyb


title: 523-12_UNP-May 31_human_liver_EAM5755

description: Agilent Oligo Hyb

source_name: 523-12, human liver, Cy3

source_name: UNP-May 31, human liver, Cy5


title: 523-12_UNP-May 31_human_liver_EAM5754

description: Agilent Oligo Hyb


title: UNP-May 2008_65:73_human_liver_EAM7505

description: Agilent Oligo Hyb

source_name: 65:73, human liver, Cy5


title: 509:12:00_UNP pool (6/7,14, 8/22)_human_liver_EAM6044

description: Agilent Oligo Hyb


title: UNP-June 7_599:3_human_liver_EAM5777

description: Agilent Oligo Hyb

source_name: UNP-June 7, human liver, Cy3

source_name: 599:3, human liver, Cy5


title: UNP-May 31_523-12_human_liver_EAM5753

description: Agilent Oligo Hyb

source_name: UNP-May 31, human liver, Cy3

source_name: 523-12, human liver, Cy5


title: 55:12:00_UNP-June 14_human_liver_EAM5822

description: Agilent Oligo Hyb

source_name: 55:12, human liver, Cy3

source_name: UNP-June 14, human liver, Cy5


title: UNP-June 14_7:3_human_liver_EAM5824

description: Agilent Oligo Hyb

source_name: UNP-June 14, human liver, Cy3

source_name: 7:3, human liver, Cy5


title: 55:12:00_UNP-June 14_human_liver_EAM5823

description: Agilent Oligo Hyb


title: 1064:12:00_UNP-Sept 20_human_liver_EAM6148

description: Agilent Oligo Hyb

source_name: 1064:12, human liver, Cy3


title: 55:06:00_UNP-June 14_human_liver_EAM5830

description: Agilent Oligo Hyb

source_name: 55:6, human liver, Cy3


title: 7:03_UNP-June 14_human_liver_EAM5827

description: Agilent Oligo Hyb

source_name: 7:3, human liver, Cy3


title: UNP-June 14_55:12_human_liver_EAM5820

description: Agilent Oligo Hyb

source_name: 55:12, human liver, Cy5


title: UNP-Sept 20_181:12_human_liver_EAM6167

description: Agilent Oligo Hyb

source_name: UNP-Sept 20, human liver, Cy3

source_name: 181:12, human liver, Cy5


title: UNP-June 14_55:6_human_liver_EAM5829

description: Agilent Oligo Hyb

source_name: 55:6, human liver, Cy5


title: 7:03_UNP-June 14_human_liver_EAM5826

description: Agilent Oligo Hyb


title: UNP-June 14_55:12_human_liver_EAM5821

description: Agilent Oligo Hyb


title: UNP-June 14_7:3_human_liver_EAM5825

description: Agilent Oligo Hyb


title: UNP-June 14_95:4_human_liver_EAM5881

description: Agilent Oligo Hyb

source_name: 95:4, human liver, Cy5


title: 662:12:00_UNP-June 14_human_liver_EAM5880

description: Agilent Oligo Hyb

source_name: 662:12, human liver, Cy3


title: UNP-June 7_7:12_human_liver_EAM5771

description: Agilent Oligo Hyb

source_name: UNP-June 7, human liver, Cy3

source_name: 7:12, human liver, Cy5


title: UNP-Sept 19_208:6_human_liver_EAM6085

description: Agilent Oligo Hyb

source_name: UNP-Sept 19, human liver, Cy3

source_name: 208:6, human liver, Cy5


title: 190:03:00_UNP-March22_human_liver_EAM6019

description: Agilent Oligo Hyb

source_name: 190:3, human liver, Cy3

source_name: UNP-March22, human liver, Cy5


title: UNP-June 14_662:12_human_liver_EAM5878

description: Agilent Oligo Hyb

source_name: UNP-June 14, human liver, Cy3

source_name: 662:12, human liver, Cy5


title: UNP-June 14_662:12_human_liver_EAM5877

description: Agilent Oligo Hyb


title: 443-12_UNP-May 31_human_liver_EAM5747

description: Agilent Oligo Hyb

source_name: 443-12, human liver, Cy3

source_name: UNP-May 31, human liver, Cy5


title: 7:12_UNP-June 7_human_liver_EAM5772

description: Agilent Oligo Hyb

source_name: 7:12, human liver, Cy3

source_name: UNP-June 7, human liver, Cy5


title: UNP-May 31_443-12_human_liver_EAM5745

description: Agilent Oligo Hyb

source_name: UNP-May 31, human liver, Cy3

source_name: 443-12, human liver, Cy5


title: 599:03:00_UNP-June 7_human_liver_EAM5778

description: Agilent Oligo Hyb

source_name: 599:3, human liver, Cy3


title: 662:12:00_UNP-June 14_human_liver_EAM5879

description: Agilent Oligo Hyb

source_name: UNP-June 14, human liver, Cy5


title: 599:03:00_UNP-June 7_human_liver_EAM5779

description: Agilent Oligo Hyb


title: 7:12_UNP-June 7_human_liver_EAM5773

description: Agilent Oligo Hyb


title: 667:24:00_UNP-December 2007_human_liver_EAM7271

description: Agilent Oligo Hyb

source_name: 667:24, human liver, Cy3

source_name: UNP-December 2007, human liver, Cy5

value: UNP-December 2007


title: 13:36_UNP-December 2007_human_liver_EAM7226

description: Agilent Oligo Hyb

source_name: 13:36, human liver, Cy3


title: UNP-December 2007_74:36_human_liver_EAM7272

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy3

source_name: 74:36, human liver, Cy5


title: 13:36_UNP-December 2007_human_liver_EAM7227

description: Agilent Oligo Hyb


title: UNP-December 2007_13:36_human_liver_EAM7225

description: Agilent Oligo Hyb

source_name: 13:36, human liver, Cy5


title: UNP-December 2007_474:24_human_liver_EAM7228

description: Agilent Oligo Hyb

source_name: 474:24, human liver, Cy5


title: 103:02:00_UNP-Aug 2007_human_EAM7197

description: Agilent Oligo Hyb

source_name: 103:2, human liver, Cy3

source_name: UNP-Aug 2007, human, Cy5

value: UNP-Aug 2007


title: 52:60_UNP-Aug 2007_human_EAM7201

description: Agilent Oligo Hyb

source_name: 52:60, human liver, Cy3


title: UNP-Aug 2007_52:60_human_liver_EAM7199

description: Agilent Oligo Hyb

source_name: UNP-Aug 2007, human, Cy3

source_name: 52:60, human liver, Cy5


title: UNP-December 2007_667:24_human_liver_EAM7269

description: Agilent Oligo Hyb

source_name: 667:24, human liver, Cy5


title: UNP-April 2008_36:14_human_liver_EAM7409

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 36:14, human liver, Cy5


title: UNP-April 2008_36:14_human_liver_EAM7410

description: Agilent Oligo Hyb


title: 693:24:00_UNP-December 2007_human_liver_EAM7263

description: Agilent Oligo Hyb

source_name: 693:24, human liver, Cy3


title: 13:24_UNP-Aug 2007_human_EAM7173

description: Agilent Oligo Hyb

source_name: 13:24, human liver, Cy3


title: UNP-Aug 2007_52:60_human_liver_EAM7198

description: Agilent Oligo Hyb


title: 13:24_UNP-Aug 2007_human_EAM7172

description: Agilent Oligo Hyb


title: UNP-December 2007_667:24_human_liver_EAM7268

description: Agilent Oligo Hyb


title: UNP-April 2008_65:39_human_liver_EAM7413

description: Agilent Oligo Hyb

source_name: 65:39, human liver, Cy5


title: 52:60_UNP-Aug 2007_human_EAM7200

description: Agilent Oligo Hyb


title: 667:24:00_UNP-December 2007_human_liver_EAM7270

description: Agilent Oligo Hyb

source_name: 667:24, human liver, Cy3

source_name: UNP-December 2007, human liver, Cy5


title: 36:14:00_UNP-April 2008_human_liver_EAM7411

description: Agilent Oligo Hyb

source_name: 36:14, human liver, Cy3

source_name: UNP-April 2008, human liver, Cy5


title: 36:14:00_UNP-April 2008_human_liver_EAM7412

description: Agilent Oligo Hyb


title: UNP-June 14_662:4_human_liver_EAM5833

description: Agilent Oligo Hyb

source_name: UNP-June 14, human liver, Cy3

source_name: 662:4, human liver, Cy5


title: UNP-December 2007_856:18_human_liver_EAM7264

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy3

source_name: 856:18, human liver, Cy5


title: UNP-December 2007_856:18_human_liver_EAM7265

description: Agilent Oligo Hyb


title: 856:18:00_UNP-December 2007_human_liver_EAM7267

description: Agilent Oligo Hyb

source_name: 856:18, human liver, Cy3


title: UNP-April 2008_553:60_human_liver_EAM7423

description: Agilent Oligo Hyb

source_name: 553:60, human liver, Cy5


title: UNP-December 2007_772:24_human_liver_EAM7277

description: Agilent Oligo Hyb

source_name: 772:24, human liver, Cy5


title: 52:36:00_UNP-Aug 2007_human_EAM7150

description: Agilent Oligo Hyb

source_name: 52:36, human liver, Cy3

source_name: UNP-Aug 2007, human, Cy5


title: UNP-December 2007_74:36_human_liver_EAM7273

description: Agilent Oligo Hyb

source_name: 74:36, human liver, Cy5


title: 52:24:00_UNP-Aug 2007_human_EAM7147

description: Agilent Oligo Hyb

source_name: 52:24, human liver, Cy3


title: 74:36:00_UNP-December 2007_human_liver_EAM7275

description: Agilent Oligo Hyb

source_name: 74:36, human liver, Cy3


title: 856:18:00_UNP-December 2007_human_liver_EAM7266

description: Agilent Oligo Hyb


title: 74:36:00_UNP-December 2007_human_liver_EAM7274

description: Agilent Oligo Hyb


title: UNP-Aug 2007_52:36_human_liver_EAM7148

description: Agilent Oligo Hyb

source_name: UNP-Aug 2007, human, Cy3

source_name: 52:36, human liver, Cy5


title: UNP-December 2007_772:24_human_liver_EAM7276

description: Agilent Oligo Hyb


title: UNP-Aug 2007_52:36_human_liver_EAM7149

description: Agilent Oligo Hyb


title: UNP-Aug 2007_168:48_human_liver_EAM7140

description: Agilent Oligo Hyb

source_name: 168:48, human liver, Cy5


title: UNP-December 2007_693:24_human_liver_EAM7260

description: Agilent Oligo Hyb

source_name: 693:24, human liver, Cy5


title: UNP-December 2007_637:6_human_liver_EAM7328

description: Agilent Oligo Hyb

source_name: 637:6, human liver, Cy5


title: 168:36:00_UNP-Aug 2007_human_EAM7139

description: Agilent Oligo Hyb

source_name: 168:36, human liver, Cy3


title: 693:24:00_UNP-December 2007_human_liver_EAM7262

description: Agilent Oligo Hyb

source_name: 693:24, human liver, Cy3

source_name: UNP-December 2007, human liver, Cy5


title: UNP-Aug 2007_168:36_human_liver_EAM7137

description: Agilent Oligo Hyb

source_name: 168:36, human liver, Cy5


title: UNP-December 2007_637:6_human_liver_EAM7329

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy3


title: UNP-April 2008_553:60_human_liver_EAM7424

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 553:60, human liver, Cy5


title: 36:48:00_UNP-December 2007_human_liver_EAM7259

description: Agilent Oligo Hyb

source_name: 36:48, human liver, Cy3


title: 168:36:00_UNP-Aug 2007_human_EAM7138

description: Agilent Oligo Hyb

source_name: UNP-Aug 2007, human, Cy5


title: 52:24:00_UNP-Aug 2007_human_EAM7146

description: Agilent Oligo Hyb


title: 36:48:00_UNP-December 2007_human_liver_EAM7258

description: Agilent Oligo Hyb


title: 693:03:00_UNP-December 2007_human_liver_EAM7327

description: Agilent Oligo Hyb

source_name: 693:3, human liver, Cy3


title: 637:06:00_UNP-December 2007_human_liver_EAM7330

description: Agilent Oligo Hyb

source_name: 637:6, human liver, Cy3


title: UNP-December 2007_693:24_human_liver_EAM7261

description: Agilent Oligo Hyb


title: 693:03:00_UNP-December 2007_human_liver_EAM7326

description: Agilent Oligo Hyb


title: UNP-Aug 2007_39:36_human_liver_EAM7191

description: Agilent Oligo Hyb

source_name: 39:36, human liver, Cy5


title: 103:02:00_UNP-Aug 2007_human_EAM7196

description: Agilent Oligo Hyb

source_name: 103:2, human liver, Cy3


title: UNP-December 2007_637:24_human_liver_EAM7280

description: Agilent Oligo Hyb

source_name: 637:24, human liver, Cy5


title: UNP-December 2007_637:24_human_liver_EAM7281

description: Agilent Oligo Hyb


title: 637:24:00_UNP-December 2007_human_liver_EAM7282

description: Agilent Oligo Hyb

source_name: 637:24, human liver, Cy3


title: UNP-Aug 2007_52:24_human_liver_EAM7145

description: Agilent Oligo Hyb

source_name: UNP-Aug 2007, human, Cy3

source_name: 52:24, human liver, Cy5


title: 772:24:00_UNP-December 2007_human_liver_EAM7279

description: Agilent Oligo Hyb

source_name: 772:24, human liver, Cy3


title: UNP-Aug 2007_52:24_human_liver_EAM7144

description: Agilent Oligo Hyb


title: 168:48:00_UNP-Aug 2007_human_EAM7143

description: Agilent Oligo Hyb

source_name: 168:48, human liver, Cy3


title: UNP-Aug 2007_168:48_human_liver_EAM7141

description: Agilent Oligo Hyb

source_name: 168:48, human liver, Cy5


title: UNP-Aug 2007_168:3_human_liver_EAM7133

description: Agilent Oligo Hyb

source_name: 168:3, human liver, Cy5


title: 39:36:00_UNP-Aug 2007_human_EAM7193

description: Agilent Oligo Hyb

source_name: 39:36, human liver, Cy3


title: 168:03:00_UNP-Aug 2007_human_EAM7134

description: Agilent Oligo Hyb

source_name: 168:3, human liver, Cy3


title: 772:24:00_UNP-December 2007_human_liver_EAM7278

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy5


title: 168:03:00_UNP-Aug 2007_human_EAM7135

description: Agilent Oligo Hyb


title: 39:36:00_UNP-Aug 2007_human_EAM7192

description: Agilent Oligo Hyb


title: UNP-Aug 2007_103:2_human_liver_EAM7195

description: Agilent Oligo Hyb

source_name: 103:2, human liver, Cy5


title: UNP-Aug 2007_168:36_human_liver_EAM7136

description: Agilent Oligo Hyb

source_name: 168:36, human liver, Cy5


title: UNP-Aug 2007_140:18_human_liver_EAM7186

description: Agilent Oligo Hyb

source_name: 140:18, human liver, Cy5


title: 474:24:00_UNP-December 2007_human_liver_EAM7231

description: Agilent Oligo Hyb

source_name: 474:24, human liver, Cy3


title: UNP-December 2007_36:48_Human_liver_EAM7256

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy3

source_name: 36:48, human liver, Cy5


title: UNP-December 2007_474:24_human_liver_EAM7229

description: Agilent Oligo Hyb

source_name: 474:24, human liver, Cy5


title: 168:48:00_UNP-Aug 2007_human_EAM7142

description: Agilent Oligo Hyb

source_name: UNP-Aug 2007, human, Cy5


title: UNP-December 2007_36:48_Human_liver_EAM7257

description: Agilent Oligo Hyb


title: 474:24:00_UNP-December 2007_human_liver_EAM7230

description: Agilent Oligo Hyb


title: 140:18:00_UNP-Aug 2007_human_EAM7188

description: Agilent Oligo Hyb

source_name: 140:18, human liver, Cy3


title: UNP-Aug 2007_140:18_human_liver_EAM7187

description: Agilent Oligo Hyb

source_name: UNP-Aug 2007, human, Cy3


title: UNP-Aug 2007_168:3_human_liver_EAM7132

description: Agilent Oligo Hyb


title: 443-12_UNP-May 31_human_liver_EAM5746

description: Agilent Oligo Hyb

source_name: 443-12, human liver, Cy3

source_name: UNP-May 31, human liver, Cy5


title: 140:18:00_UNP-Aug 2007_human_EAM7189

description: Agilent Oligo Hyb


title: UNP-Oct.24_79:6_human_liver_EAM6264

description: Agilent Oligo Hyb

source_name: UNP-Oct.24, human liver, Cy3

source_name: 79:6, human liver, Cy5


title: UNP-April 2008_460:86_human_liver_EAM7448

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 460:86, human liver, Cy5


title: 460:86_UNP-April 2008_human_liver_EAM7449

description: Agilent Oligo Hyb

source_name: 460:86, human liver, Cy3

source_name: UNP-April 2008, human liver, Cy5


title: UNP-December 2007_13:36_human_liver_EAM7224

description: Agilent Oligo Hyb

source_name: 13:36, human liver, Cy5


title: 460:86_UNP-April 2008_human_liver_EAM7450

description: Agilent Oligo Hyb


title: UNP-Aug 2007_39:36_human_liver_EAM7190

description: Agilent Oligo Hyb

source_name: 39:36, human liver, Cy5


title: UNP-April 2008_417:73_human_liver_EAM7451

description: Agilent Oligo Hyb

source_name: 417:73, human liver, Cy5


title: UNP-Oct.24_79:24_human_liver_EAM6259

description: Agilent Oligo Hyb

source_name: 79:24, human liver, Cy5


title: UNP-April 2008_417:73_human_liver_EAM7452

description: Agilent Oligo Hyb


title: 79:06:00_UNP-Oct.24_human_liver_EAM6265

description: Agilent Oligo Hyb

source_name: 79:6, human liver, Cy3

source_name: UNP-Oct.24, human liver, Cy5


title: UNP-Oct.24_79:24_human_liver_EAM6260

description: Agilent Oligo Hyb


title: 79:06:00_UNP-Oct.24_human_liver_EAM6266

description: Agilent Oligo Hyb


title: UNP-Oct.24_79:6_human_liver_EAM6263

description: Agilent Oligo Hyb


title: 79:24:00_UNP-Oct.24_human_liver_EAM6261

description: Agilent Oligo Hyb

source_name: 79:24, human liver, Cy3


title: UNP-Oct.24_704:12_human_liver_EAM6218

description: Agilent Oligo Hyb

source_name: 704:12, human liver, Cy5


title: UNP-Oct.24_480:9_human_liver_EAM6296

description: Agilent Oligo Hyb

source_name: 480:9, human liver, Cy5


title: 704:12:00_UNP-Oct.24_human_liver_EAM6219

description: Agilent Oligo Hyb

source_name: 704:12, human liver, Cy3


title: 79:24:00_UNP-Oct.24_human_liver_EAM6262

description: Agilent Oligo Hyb


title: UNP-April 2008_385:48_human_liver_EAM7436

description: Agilent Oligo Hyb

source_name: 385:48, human liver, Cy5


title: 385:48:00_UNP-April 2008_human_liver_EAM7437

description: Agilent Oligo Hyb

source_name: 385:48, human liver, Cy3


title: UNP-Oct.24_480:9_human_liver_EAM6297

description: Agilent Oligo Hyb

source_name: UNP-Oct.24, human liver, Cy3


title: 704:12:00_UNP-Oct.24_human_liver_EAM6220

description: Agilent Oligo Hyb


title: UNP-Aug 2007_541:3_human_liver_EAM7179

description: Agilent Oligo Hyb

source_name: UNP-Aug 2007, human, Cy3

source_name: 541:3, human liver, Cy5


title: 385:36:00_UNP-April 2008_human_liver_EAM7434

description: Agilent Oligo Hyb

source_name: 385:36, human liver, Cy3


title: 523:03:00_UNP-December 2007_human_liver_EAM7338

description: Agilent Oligo Hyb

source_name: 523:3, human liver, Cy3

source_name: UNP-December 2007, human liver, Cy5


title: UNP-April 2008_385:48_human_liver_EAM7435

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3


title: 541:03:00_UNP-Aug 2007_human_EAM7180

description: Agilent Oligo Hyb

source_name: 541:3, human liver, Cy3

source_name: UNP-Aug 2007, human, Cy5


title: 541:03:00_UNP-Aug 2007_human_EAM7181

description: Agilent Oligo Hyb


title: UNP-Aug 2007_103:2_human_liver_EAM7194

description: Agilent Oligo Hyb

source_name: 103:2, human liver, Cy5


title: 385:48:00_UNP-April 2008_human_liver_EAM7438

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy5


title: UNP-Aug 2007_541:3_human_liver_EAM7178

description: Agilent Oligo Hyb


title: 553:60_UNP-April 2008_human_liver_EAM7426

description: Agilent Oligo Hyb

source_name: 553:60, human liver, Cy3


title: 523:03:00_UNP-December 2007_human_liver_EAM7339

description: Agilent Oligo Hyb


title: UNP-December 2007_140:1_human_liver_EAM7340

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy3

source_name: 140:1, human liver, Cy5


title: UNP-December 2007_667:3_human_liver_EAM7321

description: Agilent Oligo Hyb

source_name: 667:3, human liver, Cy5


title: 457:36:00_UNP-April 2008_human_liver_EAM7429

description: Agilent Oligo Hyb

source_name: 457:36, human liver, Cy3


title: 553:60_UNP-April 2008_human_liver_EAM7425

description: Agilent Oligo Hyb


title: UNP-April 2008_457:36_human_liver_EAM7428

description: Agilent Oligo Hyb

source_name: 457:36, human liver, Cy5


title: UNP-April 2008_457:36_human_liver_EAM7427

description: Agilent Oligo Hyb


title: UNP-December 2007_693:3_human_liver_EAM7324

description: Agilent Oligo Hyb

source_name: 693:3, human liver, Cy5


title: 667:03:00_UNP-December 2007_human_liver_EAM7323

description: Agilent Oligo Hyb

source_name: 667:3, human liver, Cy3


title: 637:06:00_UNP-December 2007_human_liver_EAM7331

description: Agilent Oligo Hyb

source_name: 637:6, human liver, Cy3


title: UNP-Oct.24_704:12_human_liver_EAM6217

description: Agilent Oligo Hyb

source_name: UNP-Oct.24, human liver, Cy3

source_name: 704:12, human liver, Cy5


title: UNP-Oct.24_629:6_human_liver_EAM6213

description: Agilent Oligo Hyb

source_name: 629:6, human liver, Cy5


title: 667:03:00_UNP-December 2007_human_liver_EAM7322

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy5


title: UNP-December 2007_671:3_human_liver_EAM7333

description: Agilent Oligo Hyb

source_name: 671:3, human liver, Cy5


title: UNP-December 2007_671:3_human_liver_EAM7332

description: Agilent Oligo Hyb


title: 629:06:00_UNP-Oct.24_human_liver_EAM6216

description: Agilent Oligo Hyb

source_name: 629:6, human liver, Cy3

source_name: UNP-Oct.24, human liver, Cy5


title: 671:03:00_UNP-December 2007_human_liver_EAM7335

description: Agilent Oligo Hyb

source_name: 671:3, human liver, Cy3


title: UNP-December 2007_693:3_human_liver_EAM7325

description: Agilent Oligo Hyb


title: 671:03:00_UNP-December 2007_human_liver_EAM7334

description: Agilent Oligo Hyb


title: UNP-Oct.24_629:6_human_liver_EAM6214

description: Agilent Oligo Hyb


title: 120:38:00_UNP-April 2008_human_liver_EAM7482

description: Agilent Oligo Hyb

source_name: 120:38, human liver, Cy3

source_name: UNP-April 2008, human liver, Cy5


title: UNP-April 2008_201:73_human_liver_EAM7468

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3

source_name: 201:73, human liver, Cy5


title: 629:06:00_UNP-Oct.24_human_liver_EAM6215

description: Agilent Oligo Hyb


title: 120:38:00_UNP-April 2008_human_liver_EAM7481

description: Agilent Oligo Hyb


title: UNP-Aug 2007_3:24_human_liver_EAM7152

description: Agilent Oligo Hyb

source_name: UNP-Aug 2007, human, Cy3

source_name: 3:24, human liver, Cy5


title: 201:73_UNP-April 2008_human_liver_EAM7469

description: Agilent Oligo Hyb

source_name: 201:73, human liver, Cy3


title: 52:36:00_UNP-Aug 2007_human_EAM7151

description: Agilent Oligo Hyb

source_name: 52:36, human liver, Cy3

source_name: UNP-Aug 2007, human, Cy5


title: UNP-Aug 2007_3:24_human_liver_EAM7153

description: Agilent Oligo Hyb


title: 201:73_UNP-April 2008_human_liver_EAM7470

description: Agilent Oligo Hyb


title: 3:24_UNP-Aug 2007_human_EAM7161

description: Agilent Oligo Hyb

source_name: 3:24, human liver, Cy3


title: UNP-April 2008_179:74_human_liver_EAM7476

description: Agilent Oligo Hyb

source_name: 179:74, human liver, Cy5


title: UNP-April 2008_120:38_human_liver_EAM7480

description: Agilent Oligo Hyb

source_name: 120:38, human liver, Cy5


title: 3:24_UNP-Aug 2007_human_EAM7154

description: Agilent Oligo Hyb


title: 179:74_UNP-April 2008_human_liver_EAM7477

description: Agilent Oligo Hyb

source_name: 179:74, human liver, Cy3


title: UNP-Aug 2007_13:24_human_liver_EAM7171

description: Agilent Oligo Hyb

source_name: 13:24, human liver, Cy5


title: 109:33:00_UNP-May 2008_human_EAM7553

description: Agilent Oligo Hyb

source_name: 109:33, human liver, Cy3

source_name: UNP-May 2008, human, Cy5


title: UNP-Aug 2007_13:24_human_liver_EAM7170

description: Agilent Oligo Hyb


title: 109:33:00_UNP-May 2008_human_EAM7554

description: Agilent Oligo Hyb


title: UNP-April 2008_68:27_human_liver_EAM7418

description: Agilent Oligo Hyb

source_name: 68:27, human liver, Cy5


title: UNP-Aug 2007_13:3_human_liver_EAM7162

description: Agilent Oligo Hyb

source_name: 13:3, human liver, Cy5


title: 179:74_UNP-April 2008_human_liver_EAM7478

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy5


title: 140:01:00_UNP-December 2007_human_liver_EAM7343

description: Agilent Oligo Hyb

source_name: 140:1, human liver, Cy3

source_name: UNP-December 2007, human liver, Cy5


title: UNP-December 2007_140:1_human_liver_EAM7341

description: Agilent Oligo Hyb

source_name: UNP-December 2007, human liver, Cy3

source_name: 140:1, human liver, Cy5


title: UNP-April 2008_68:27_human_liver_EAM7417

description: Agilent Oligo Hyb

source_name: UNP-April 2008, human liver, Cy3


title: 140:01:00_UNP-December 2007_human_liver_EAM7342

description: Agilent Oligo Hyb


title: UNP-Aug 2007_13:6_human_liver_EAM7167

description: Agilent Oligo Hyb

source_name: UNP-Aug 2007, human, Cy3

source_name: 13:6, human liver, Cy5


title: UNP-May 2008_417:49_human_liver_EAM7509

description: Agilent Oligo Hyb

source_name: UNP-May 2008, human, Cy3

source_name: 417:49, human liver, Cy5


title: UNP-Aug 2007_13:3_human_liver_EAM7163

description: Agilent Oligo Hyb


title: 13:03_UNP-Aug 2007_human_EAM7164

description: Agilent Oligo Hyb

source_name: 13:3, human liver, Cy3

source_name: UNP-Aug 2007, human, Cy5


title: UNP-Aug 2007_13:6_human_liver_EAM7166

description: Agilent Oligo Hyb


title: 13:03_UNP-Aug 2007_human_EAM7165

description: Agilent Oligo Hyb


title: UNP-April 2008_397:84_human_liver_EAM7464

description: Agilent Oligo Hyb

source_name: 397:84, human liver, Cy5


title: 417:49:00_UNP-May 2008_human_EAM7512

description: Agilent Oligo Hyb

source_name: 417:49, human liver, Cy3


title: 417:49:00_UNP-May 2008_human_EAM7511

description: Agilent Oligo Hyb

source_name: UNP-May 2008, human, Cy5


title: 13:06_UNP-Aug 2007_human_EAM7168

description: Agilent Oligo Hyb

source_name: 13:6, human liver, Cy3


title: UNP-April 2008_397:84_human_liver_EAM7463

description: Agilent Oligo Hyb


title: 397:84_UNP-April 2008_human_liver_EAM7466

description: Agilent Oligo Hyb

source_name: 397:84, human liver, Cy3


title: UNP-May 2008_109:12_human_liver_EAM7513

description: Agilent Oligo Hyb

source_name: 109:12, human liver, Cy5


title: UNP-May 2008_109:12_human_liver_EAM7514

description: Agilent Oligo Hyb


title: UNP-May 2008_417:49_human_liver_EAM7510

description: Agilent Oligo Hyb


title: 109:12:00_UNP-May 2008_human_EAM7515

description: Agilent Oligo Hyb

source_name: 109:12, human liver, Cy3


title: 109:12:00_UNP-May 2008_human_EAM7516

description: Agilent Oligo Hyb


title: UNP-May 2008_109:33_human_liver_EAM7518

description: Agilent Oligo Hyb

source_name: 109:33, human liver, Cy5