title: Wound tissue day7 vs. day0 uninjured skin rep.3 low int. scan

description: Biological replicate 3 of 4. Wound tissue day 7 vs day 0 uninjured skin.Low intensity scan. Scan 1 of 2.


title: Wound tissue day7 vs. day0 uninjured skin rep.4 (dye flip) low int. scan

status: Public on Jul 30 2012

type: RNA

city: Dolni Dobrouc

first: Rastislav

last: Slavkovský

address: Dolni Dobrouc 401

department: R&D

country: Czech Republic

institute: Contipro Biotech

description: Biological replicate 4 of 4. Wound tissue day 7 vs day 0 uninjured skin.Low intensity scan. Scan 1 of 2.

hyb_protocol: Samples from skin and wound from the same animal, labeled with opposite color were hybridized. After 30 min/60  C fragmentation of samples with fragmentation buffer and blocking agent (Agilent), Hi-RPM Hybridization buffer (Agilent) was added and mixed. Mixture was applied to microarrays and enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed sequential. Hybridization was performed at 65°C for 17h. Slide were washed thoroughly using  GE Wash Buffer 1 at RT, Wash Buffer 2 at 37°C and HPLC acetonitril (Sigma), followed by stabilization using Stabilization and drying solution (Agilent)

scan_protocol: Slides were scanned using Molecular Device Axon Gene Pix 4000B (ver. 2010) at 5 um resolution, with 3 passages  at low PMT settings (L-samples) and  3 passages high PMT settings (H-samples), in order to detect wide range of expressions.

data_processing: Gene Pix Pro 7.2 was used for image analysis and bad spots removal (low intensity, saturated, control array spots). Acuity 4.1 was used for data compilation, LOWESS normalization and data analysis. Where applicable, flip dye function was applied on flip dye data (logR => -logR). Values, in the Sample tables, are not merged (high and low intensity scan). Positive values signify increase of transcript in wound sample in comparison to skin. Negative values signify decrease in skin. Hi and Low intensity scans data were merged using average of LOWESS logR, for further analysis.

molecule: total RNA

organism: Sus scrofa

source_name: D0 skin

label_protocol: 0.5 µg of total RNA was amplified labeled with Cy3 and Cy5-CTPs using Low Input QuickAmp Labeling Kit (Agilent) according to manufactuers's instructions. In two animals, skin samples were labeled Cy3 and wound sample Cy5, in other two animals, samples were labeled inversly using flip dye.

extract_protocol: Total RNA extracted from tissue stabilized in RNALatter using QIAGEN RNeasy Lipid Tissue Mini kit and automatic isolator QIAcube according to supplier standard protocol and instructions.

tag: scan method

value: low int. scan

tag: tissue

value: skin

tag: sample day

source_name: D7 wound tissue

value: granulation wound tissue


title: control treatment day28 replicate 1

city: St Lucia

first: Paulina

last: Kaniewska

address: Gehrman Building

department: School of Biological Sciences

country: Australia

institute: University of Queensland

hyb_protocol: Samples were hybridized using the Genisphere 900 3DNA kit components (vial 7 buffer) plus human Cot DNA (for blocking) at 42 degrees overnight.  Wash: 15 min (2X SSC/ 0.1% SDS at 65 degrees), 15 min 2X SSC RT, 15 min 0.2X SSC .

scan_protocol: Slides were scanned using AXON GenePix4000B, and and image acquisition and quality control was performed using the software GenePix ® Pro 5.

data_processing: Normexp background corrected signal intensities were used, also print-tip loess normalization was applied within slides, while scale normalization was applied between slides, in order to ensure that distributions were similar between arrays. As the experimental design for this experiment was a reference microarray design the value represents the normalized log (Channel 1/channel 2).

organism: Acropora millepora

source_name: Coral after 28 days of control treatment exposure replicate 1

label_protocol: cDNA probe synthesis was performed from 1000ng total RNA using Superscript Reverse Transcripase (Invitrogen) and the Genisphere 900 3DNA Dendrimer from a Genisphere 3DNA-900 microarray kit according to the manufacturers’ instructions.

extract_protocol: Total RNA was extracted from each sample using Trizol (Invitrogen) following manufacturer’s instructions.  The integrity and quality of total RNA was assessed using a Bioanalyzer (Agilent Technology).  Only samples showing intact RNA were used for probe construction.

tag: sample type

value: adult coral in symbiosis with dinoflagellate

tag: acidification treatment

tag: time

value: 28 days

source_name: reference sample for coral

value: reference sample of pooled control and time zero adult corals


title: high treatment day1 replicate 2

source_name: Coral after 1 day of high treatment exposure replicate 2

value: 1 day


title: Wound tissue day3 vs. day0 uninjured skin rep.1 high int. scan

description: Biological replicate 1 of 4. Wound tissue day 3 vs day 0 uninjured skin. High intensity scan.  Scan 2 of 2.

source_name: D3 wound tissue

value: high int. scan


title: Wound tissue day3 vs. day0 uninjured skin rep.2 (dye flip) high int. scan

description: Biological replicate 2 of 4. Wound tissue day 3 vs day 0 uninjured skin. High intensity scan. Scan 2 of 2.


title: Eyl31 /Eyl25 rep4

city: New Orleans

first: Meng

last: Luo

state: LA

address: 1100 Robert E Lee Blvd

department: FFS

country: USA

institute: SRRC, USDA-ARS

description:
Biological replicate 4 of 4.
Dry seed EYL31 -EYL25 (4).gpr

hyb_protocol: According to the protocols provided by the manufacturer (http://www.maizearray.org/maize_protocols.shtml), 12 μg of Cy3 and Cy5 labeled cRNAs were hybridized to the 46k oligonucleotide array (Version 1).

scan_protocol: Slides were scanned using the Genepix 4000B (Molecular Devices, Sunnyvale, CA). The saturated spots ratio was set as 0.005%.

data_processing:
Array images were processed using GENEPIX 6.0. Raw intensity data were imported into GeneSpring GX 10.0 software (Silicon Genetics, Redwood City, CA). Two criteria were used for selecting positive spots, (Signal – Background) mean > 400 unit as expression intensity filter, and at least two spots existing in the four replicates. Data normalization was performed using a LOWESS filter (locally weighted regression).
Differentially expressed genes were identified by performing a one-way ANOVA on the normalized data using a T-test with no assumption of equal variance. A Benjamini and Hochberg correction for multiple testing was applied using a false-discovery rate (FDR) of 0.05. Genes showing a ratio above 2 (below 0.5) in at least three of four replicates of the same experiments were considered up- (down) regulated.

organism: Zea mays

label_protocol: Purified total RNA was amplified and labeled following the aminoallyl method (http://www.maizearray.org/maize_protocols.shtml). The Ambion Message Amp II kit was used to produce cRNA which is indirectly labeled using dye Cy3 or Cy5 coupling reaction.

extract_protocol: Total RNA was extracted from dry seeds using a Trizol (Invitrogen). RNA was then treated with RNase-free DNase I (Qiagen) according to the manufacturer’s instructions. Treated RNA samples were further purified using an RNAeasy clean up kit (Qiagen) to remove any residual impurities.

treatment_protocol: Seeds were surface sterilized, and air dried.

value: Stored dry seeds


title: GlycophorinA positive cells_severe_Eb thalassemia

city: Kolkata

first: Uma

middle: B

last: Dasgupta

address: 92, APC Road

department: Biophysics, Molecular Biology & Bioinformatics

country: India

institute: Calcutta University

description: MicroRNA expression in GlycophorinA positive cells of severe Eb thalassemia patient

hyb_protocol: The hybridization mixture [10X GE blocking agent (4.5 ul), 2X Hi-RPM hybridization buffer (22.5ul)] along with labeled miRNA sample was heated for 5 min at 100 °C and immediately cooled to 0 °C. Each 45 mL sample was hybridized onto a microarray at 55 °C for 20 h. Slides were washed 5 min in GE wash buffer 1 at RT and again for 5 min in GE wash buffer 2 at 37 °C, followed by an acetonitrile wash for 1 min at RT to dry the slides completely.

scan_protocol: Scanned on an Agilent G2505C scanner

data_processing: Data extraction done using Agilent Feature extraction software v 10.5.1.1  and obtained background subtracted and spatially detrended Processed Signal intensities.

organism: Homo sapiens

source_name: Peripheral blood

label_protocol: miRNA labeling was performed as described in Agilent miRNA microarray protocol version 2.0 using Agilent miRNA labeling kit. 100 ng of total RNA was dephosphorylated with calf intestine alkaline phosphatase for 30 min at 37°C. Denaturation was performed by adding DMSO and incubating at 100°C for 7 min and immediately transferred to ice water bath. Ligation was performed with pCp-Cy3 at 16 °C for 2 h. The labeled samples were dried completely in a vaccum concentrator and resuspended in 18 ul of nuclease free water.

extract_protocol: Total RNA extracted using using mirVana miRNA Isolation kit (Ambion, AM1560) following manufacturer's instructions

treatment_protocol: PANCOLL (PAN Biotech GmbH) was used to isolate reticulocyte, light density erythrocyte and erythropoietic progenitor cells which were further purified by immmunomagnetic labelling using Glycophorin A (CD235+) MicroBeads (human, MACS Miltenyi Biotec) (Lot number 5090616269)

tag: disease state

value: Eb thalassemia

tag: disease severity

value: severe

value: Peripheral blood

tag: cell type

value: GlycophorinA positive cells

tag: gender

value: Female

tag: age


title: GlycophorinA positive cells_intermedia_Eb thalassemia

description: MicroRNA expression in GlycophorinA positive cells of intermedia Eb thalassemia patient

value: intermedia


title: Eyl25 /Eyl31 rep2

description:
Biological replicate 2 of 4.
Dry seed EYL25 -EYL31 (2).gpr


title: Eyl25 /Eyl31 rep1

description:
Biological replicate 1 of 4.
Dry seed EYL25 -EYL31 (1).gpr


title: Wound tissue day3 vs. day0 uninjured skin rep.2 (dye flip) low int. scan

description: Biological replicate 2 of 4. Wound tissue day 3 vs day 0 uninjured skin. Low intensity scan. Scan 1 of 2.


title: medium treatmentday1 replicate 2

source_name: Coral after 1 day of medium treatment exposure replicate 2


title: high treatment day1 replicate 3

source_name: Coral after 1 day of high treatment exposure replicate 3


title: Wound tissue day3 vs. day0 uninjured skin rep.3 low int. scan

description: Biological replicate 3 of 4. Wound tissue day 3 vs day 0 uninjured skin. Low intensity scan. Scan 1 of 2.


title: Wound tissue day3 vs. day0 uninjured skin rep.4 (dye flip) high int. scan

description: Biological replicate 4 of 4. Wound tissue day 3 vs day 0 uninjured skin. High intensity scan. Scan 2 of 2.


title: medium treatmentday1 replicate 1

source_name: Coral after 1 day of medium treatment exposure replicate 1


title: medium treatment day1 replicate 3

source_name: Coral after 1 day of medium treatment exposure replicate 3


title: high treatment day1 replicate 1

source_name: Coral after 1 day of high treatment exposure replicate 1


title: Eyl31 /Eyl25 rep3

description:
Biological replicate 3 of 4.
Dry seed EYL31 -EYL25 (3).gpr


title: Wound tissue day3 vs. day0 uninjured skin rep.1  low int. scan

description: Biological replicate 1 of 4. Wound tissue day 3 vs day 0 uninjured skin. Low intensity scan. Scan 1 of 2.


title: OCI-Ly7

city: New-York

first: thomas

last: clozel

state: NY

address: 1300 York Avenue

department: Hematology-Oncology

institute: Weill Cornell Medical College

description: 2 biological replicates

hyb_protocol: Hybridization was performed by NimbleGen Systems Inc., Reykjavik,Iceland, following their standard operating protocol. See www.nimblegen.com.

scan_protocol: Scanning was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.

data_processing: The raw data (.pair file) was subjected to quantile normalization (Bolstad et al. Bioinformatics 19(2):185), and log2 transformation as implemented in the NimbleScan software package, version 2.3.16 (Roche NimbleGen, Inc.).

source_name: DLBCL cell line

label_protocol: Labeling was performed by NimbleGen Systems Inc., Reykjavik, Iceland, following their standard operating protocol. See www.nimblegen.com.

growth_protocol: All the cells were grown in supplemented media (RPMI or Iscove)

extract_protocol: RNA from cell lines was isolated using the RNeasy Plus MIni kit (QIAGEN). RNA integrity was determined using the RNA 6000 Nano LabChip Kit on an Agilent 2100 Bioanalyzer (Agilent Technologies). Ten micrograms of total RNA was used to synthesize double-stranded cDNA using Superscript III (Invitrogen), but using a modified oligo-d(T) primer (Supplemental Table 2). The second strand was synthesized for 2 hours at 16°C in a reaction containing 30 μl of 5× second-strand buffer (Invitrogen), 90 μl of RNAse-free water, 3 μl dNTP (10 mM), 1 μl of BSA (1 μg/μl), 1 μl of E. coli DNA ligase (10 U/μl) (Invitrogen), 4 μl E. coli DNA polymerase I (10 U/μl) (Invitrogen), and 1 μl of RNAse H (2 U/μl) (Invitrogen). Finally, 2 μl of T4 DNA Polymerase (5 U/μl) (Invitrogen) was added and the reaction incubated at 16°C for another 10 minutes. Reactions were cleaned with QIAGEN’s QIAquick PCR Purification Kit

treatment_protocol: All the cells were non-treated

tag: cell line

value: Diffuse Large B cell Lymphoma

tag: genotype

value: TP53/CMYC mutation


title: control treatment day1 replicate 2

source_name: Coral after 1 day of control treatment exposure replicate 2


title: control treatment day1 replicate 3

source_name: Coral after 1 day of control treatment exposure replicate 3


title: high treatment time zero replicate 1

source_name: Coral at time zero before high treatment exposure replicate 1


title: control treatment time zero replicate 2

source_name: Coral at time zero before control treatment exposure replicate 2


title: medium treatment time zero replicate 3

source_name: Coral at time zero before medium treatment exposure replicate 3


title: OCI-Ly1

description: 2 biological replicates

value: TP53 mutation


title: control treatment day1 replicate 1

source_name: Coral after 1 day of control treatment exposure replicate 1


title: DoHH2

description: 2 biological replicates

value: TP53/BCL2/CMYC mutation


title: DB

description: 2 biological replicates

value: DB

value: BCL2 mutation


title: high treatment time zero replicate 2

source_name: Coral at time zero before high treatment exposure replicate 2

value: adult coral in symbiosis with dinoflagellate


title: medium treatment time zero replicate 2

source_name: Coral at time zero before medium treatment exposure replicate 2

source_name: reference sample for coral

value: reference sample of pooled control and time zero adult corals


title: OCI-Ly18

description: 2 biological replicates


title: medium treatment time zero replicate 1

source_name: Coral at time zero before medium treatment exposure replicate 1


title: OCI-Ly10

description: 2 biological replicates

value: Wild-type


title: OZ

description: 2 biological replicates

value: OZ


title: RC-K8

description: 2 biological replicates


title: OCI-Ly3

description: 2 biological replicates


title: FARAGE

description: 2 biological replicates

value: FARAGE


title: OCI-Ly4

description: 2 biological replicates


title: OCI-Ly8

description: 2 biological replicates


title: control treatment time zero replicate 3

source_name: Coral at time zero before control treatment exposure replicate 3


title: high treatment time zero replicate 3

source_name: Coral at time zero before high treatment exposure replicate 3


title: control treatment time zero replicate 1

source_name: Coral at time zero before control treatment exposure replicate 1


title: OCI-Ly19

description: 2 biological replicates

value: TP53/BCL2 mutation


title: HT

description: 2 biological replicates

value: HT

value: BCL2/CMYC mutation


title: Karpas422

description: 2 biological replicates


title: Karpas231

description: 2 biological replicates


title: RI-1

description: 2 biological replicates


title: SU-DHL4

description: 2 biological replicates


title: SC1

description: 2 biological replicates


title: RL

description: 2 biological replicates

value: RL


title: WSU-DLBCL-2

description: 2 biological replicates


title: NU-DUL-1

description: 2 biological replicates


title: SU-DHL6

description: 2 biological replicates


title: SU-DHL7

description: 2 biological replicates


title: SU-DHL5

description: 2 biological replicates


title: SU-DHL8

description: 2 biological replicates

value: CMYC mutation


title: SU-DHL10

description: 2 biological replicates


title: TOLEDO

description: 2 biological replicates

value: TOLEDO


title: WSU-NHL

description: 2 biological replicates

value: WSU-NHL

value: Diffuse Large B cell Lymphoma


title: OCI-Ly7 (83796532_94381532)

type: genomic

description: OCI-Ly7  replicates 1 and 2

hyb_protocol: See Roche NimbleGen website and Selzer RR, Richmond TA, Pofahl NJ, Green RD, Eis PS, et al. (2005) Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH. Genes Chromosomes Cancer 44: 305-319. for details

scan_protocol: Scanning was performed using a GenePix 4000B scanner (Axon Instruments) as previously described in Selzer RR, Richmond TA, Pofahl NJ, Green RD, Eis PS, et al. (2005) Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH. Genes Chromosomes Cancer 44: 305-319.

data_processing: Raw data (.pair) files generated using NimbleScan software. After QC processing each array was adjusted based on the noise of random probes by substracting the mean intensity of random probes within Hpa2 nd Msp1 channels separately. After that, the Hpa2 and Msp1 values of all the arrays were quantile normalized. log2(HpaII/MspI) values were derived using quantile normalized values; Replicates were averaged regarding the situation and quality of each replicate. The software used:R 2.8.0. The downloadable software package compatible with  R 2.8.0  is available through the Bioconductor 2.3 for the quality control analysis of data derived from the HELP promoter array (http://www.bioconductor.org/), and is called HELP.

molecule: genomic DNA

source_name: DLBCL cell line; MspI representation of genomic DNA.

label_protocol: Random priming with 9-mers pre-labeled with either Cy3 or Cy5 according to manufacturer's instructions using the NimbleGen Dual-Color DNA Labeling Kit (cat # 05223547001)

extract_protocol: Representation of the genome generated by digestion with either MspI or HpaII and amplification by ligation-mediated PCR according to the HELP protocol (See B. Khulan, et al. Genome Res. 2006 Aug;16(8):1046-55)

value: DLBCL cell line OCI-Ly7

tag: replicate

value: first biological rep (83796); second biological rep (94381)

value: TP53/CMYC mutation

tag: phenotype

value: doxorubicin-sensitive

source_name: DLBCL cell line; HpaII representation of genomic DNA.


title: VAL1

description: 2 biological replicates


title: OCI-Ly10 (83799532_94115532)

description: OCI-Ly10  replicates 1 and 2

value: DLBCL cell line OCI-Ly10

value: first biological rep (83799); second biological rep (94115)

value: doxorubicin-resistant


title: Karpas231 (402157532)

description: Karpas231  replicate 1

value: DLBCL cell line Karpas231

value: first biological rep (402157)


title: OCI-Ly19 (105707532)

description: OCI-Ly19  replicate 1

value: DLBCL cell line OCI-Ly19

value: first biological rep (105707)

value: TP53/BCL2 mutation


title: DoHH2 (402153532_402155532)

description: DoHH2  replicates 1 and 2

value: DLBCL cell line DoHH2

value: first biological rep (402153); second biological rep (402155)

value: TP53/BCL2/CMYC mutation


title: rice leaves under SD condition, biological rep 1 (1G-SSD)

city: wuhan

first: Wei

last: Wang

address: Bayi Road

country: China

institute: Wuhan Universtiy

description:
081010-Rice-08290A_1G-SSD.CHP
081010-Rice-08290A_1G-SSD.CEL
Gene expression data from the second fully expanded leaf under SD condition at glume primordium differentiation stage

hyb_protocol: The resulting bio-tagged cRNA was fragmented to strands of 35–200 bases in length according to Affymetrix protocols. The fragmented cRNA was hybridized to an Affymetrix GeneChip Rice Genome Array.The hybridization was performed at 45℃ with rotation for 16 h (GeneChip Hybridization Oven 640, Affymetrix).

scan_protocol: The GeneChip arrays were washed and then stained (streptavidin-phycoerythrin) on an Affymetrix Fluidics Station 450 followed by scanning on a GeneChip Scanner 3000.

data_processing: The data were processed using GeneChip Operating Software (GCOS 1.4). An invariant set normalization procedure was performed to normalize the different arrays using DNA-chip analyzer.

label: biotin

organism: Oryza sativa

source_name: rice leaf under SD condition at glume primordium differentiation stage

label_protocol: Two μg of total RNA were used for double-stranded cDNA synthesis, then biotin-tagged cRNA was prepared using a MessageAmp™ II cRNA Amplification Kit according to the manufacturer’s instructions.

growth_protocol: All plants were grown under natural conditions at Wuhan University Campus.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: SD (10 h light/14 h dark) treatment was undertaken when the seedlings had grown more than five leaves. Differentiation from vegetative growth to reproductive growth was promoted after 10–12 days of SD treatment. The rice plants were divided into two groups for LD (15 h light/9 h dark) and SD treatment respectively when the inflorescences had developed to the secondary branch differentiation stage.

value: the second fully expanded leaf

tag: strain

value: Nongken 58S

tag: developmental stage

value: glume primordium differentiation stage

tag: light condition

value: SD


title: SU-DHL8 (179908532_105688532)

description: SU-DHL8  replicates 1 and 2

value: DLBCL cell line SU-DHL8

value: first biological rep (179908); second biological rep (105688)

value: CMYC mutation


title: rice leaves under LD condition, biological rep 3 (3P-SLD)

description:
081010-Rice-08290A_3P-SLD.CHP
081010-Rice-08290A_3P-SLD.CEL
Gene expression data from the second fully expanded leaf under LD condition at pistil/stamen primordium forming stage

source_name: rice leaf under LD condition at pistil/stamen primordium forming stage

tag: tissue

value: pistil/stamen primordium forming stage

value: LD


title: rice leaves under SD condition, biological rep 2 (2P-SSD)

description:
081010-Rice-08290A_2P-SSD.CHP
081010-Rice-08290A_2P-SSD.CEL
Gene expression data from the second fully expanded leaf under SD condition at pistil/stamen primordium forming stage

source_name: rice leaf under SD condition at pistil/stamen primordium forming stage


title: rice leaves under LD condition, biological rep 3 (3G-SLD)

description:
081010-Rice-08290A_3G-SLD.CHP
081010-Rice-08290A_3G-SLD.CEL
Gene expression data from the second fully expanded leaf under LD condition at glume primordium differentiation stage

source_name: rice leaf under LD condition at glume primordium differentiation stage


title: rice leaves under SD condition, biological rep 3 (3G-SSD)

description:
081010-Rice-08290A_3G-SSD.CHP
081010-Rice-08290A_3G-SSD.CEL
Gene expression data from the second fully expanded leaf under SD condition at glume primordium differentiation stage


title: OCI-Ly18 (181559532_105687532)

description: OCI-Ly18  replicates 1 and 2

value: DLBCL cell line OCI-Ly18

value: first biological rep (181559); second biological rep (105687)

value: doxorubicin-resistant


title: rice leaves under LD condition, biological rep 2 (2P-SLD)

description:
081010-Rice-08290A_2P-SLD.CHP
081010-Rice-08290A_2P-SLD.CEL
Gene expression data from the second fully expanded leaf under LD condition at pistil/stamen primordium forming stage


title: rice leaves under LD condition, biological rep 2 (2G-SLD)

description:
081010-Rice-08290A_2G-SLD.CHP
081010-Rice-08290A_2G-SLD.CEL
Gene expression data from the second fully expanded leaf under LD condition at glume primordium differentiation stage


title: rice leaves under SD condition, biological rep 2 (2G-SSD)

description:
081010-Rice-08290A_2G-SSD.CHP
081010-Rice-08290A_2G-SSD.CEL
Gene expression data from the second fully expanded leaf under SD condition at glume primordium differentiation stage


title: rice leaves under SD condition, biological rep3 (3P-SSD)

description:
081010-Rice-08290A_3P-SSD.CHP
081010-Rice-08290A_3P-SSD.CEL
Gene expression data from the second fully expanded leaf under SD condition at pistil/stamen primordium forming stage


title: rice leaves under LD condition, biological rep 1 (1G-SLD)

description:
081010-Rice-08290A_1G-SLD.CHP
081010-Rice-08290A_1G-SLD.CEL
Gene expression data from the second fully expanded leaf under LD condition at glume primordium differentiation stage


title: HapMap YRI sample GM19206

status: Public on Jul 29 2012

city: Chicago

first: R. Stephanie

last: Huang

state: IL

address: 900 E 57th street

institute: University of Chicago

hyb_protocol: Exiqon standard protocol for miRNAs

scan_protocol: Agilent G2505B Microarray Scanner system was used. The sensitivity was adjusted to 100% PMT. All microarrays were scanned in an ozone-free environment (less than 2ppb ozone).

data_processing: Measured signals were background corrected using Normexp with offset value 10 based on the convolution model and normalized using the global Lowess regression algorithm. (Convolution model described by Ritchie ME, Bioinformatics (2007), Vol. 23 no. 20 2007, pages 2700–2707).

source_name: lymphoblastoid cell lines

label_protocol: miRNA samples were labeled using the miRCURY Hy3/Hy5 power labeling kit.

growth_protocol: All LCLs were maintained in RPMI 1640 with 1% L-glutamine and 15% FBS.

extract_protocol: miRNA was isolated from LCLs that had a viability greater than 85% at the time of pelleting using miRNeasy Plus mini kit (Qiagen).

value: lymphoblastoid cell line GM19206

source_name: pooled all lymphoblastoid cell lines evaluated

tag: reference


title: HapMap YRI sample GM19207

value: lymphoblastoid cell line GM19207

value: pooled all lymphoblastoid cell lines evaluated


title: HapMap YRI sample GM19204

value: lymphoblastoid cell line GM19204


title: HapMap YRI sample GM19238

value: lymphoblastoid cell line GM19238


title: HapMap YRI sample GM19200

value: lymphoblastoid cell line GM19200


title: HapMap YRI sample GM19203

value: lymphoblastoid cell line GM19203


title: HapMap YRI sample GM19222

value: lymphoblastoid cell line GM19222


title: HapMap YRI sample GM19239

value: lymphoblastoid cell line GM19239


title: HapMap YRI sample GM19201

value: lymphoblastoid cell line GM19201


title: HapMap YRI sample GM19210

value: lymphoblastoid cell line GM19210


title: HapMap YRI sample GM19192

value: lymphoblastoid cell line GM19192


title: HapMap YRI sample GM19193

value: lymphoblastoid cell line GM19193


title: KP_exp_glucose_1

city: Ulsan

first: Donghyuk

last: Kim

address: 50 UNIST-gil, Eonyang-eup, Ulju-gun

department: Department of Chemical Engineering

country: South Korea

institute: UNIST

hyb_protocol: Hybridization was performed by NimbleGen Systems Inc., Madison, WI, USA following their standard operating protocol. See www.nimblegen.com.

data_processing: The raw data (.pair file) was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249), quantile normalization (Bolstad et al. Bioinformatics 19(2):185), and background correction as implemented in the NimbleScan software package, version 2.4.27 (Roche NimbleGen, Inc.).

organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578

source_name: K. pneumoniae Expression M9 glucose 1

label_protocol: Labeling was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.

growth_protocol: K. pneumoniae MGH78678 was grown to mid-log phase (O.D.600nm 0.5) aerobically at 37°C in M9 minimal media supplemented with 0.2% glucose.

extract_protocol: Total RNA was extracted using the RNeasy Plus Mini kit (Qiagen Inc., Valencia, CA, USA) and genomic DNA was removed by gDNA Eliminator spin column in the RNeasy Plus Mini Kit. RNA quality and concentration was determined by analysis with a NanoDrop 1000 (Thermo Scientific Inc., Wilmington, DE, USA).

treatment_protocol: The cell culture was treated with the RNAprotect reagent (Qiagen).


title: HapMap YRI sample GM19209

value: lymphoblastoid cell line GM19209


title: KP_exp_glucose_2

source_name: K. pneumoniae Expression M9 glucose 2


title: HapMap YRI sample GM19153

value: lymphoblastoid cell line GM19153


title: HapMap YRI sample GM19159

value: lymphoblastoid cell line GM19159


title: HapMap YRI sample GM19160

value: lymphoblastoid cell line GM19160


title: HapMap YRI sample GM19152

value: lymphoblastoid cell line GM19152


title: HapMap YRI sample GM19171

value: lymphoblastoid cell line GM19171


title: HapMap YRI sample GM19172

value: lymphoblastoid cell line GM19172

value: pooled all lymphoblastoid cell lines evaluated


title: HapMap YRI sample GM19144

value: lymphoblastoid cell line GM19144


title: HapMap YRI sample GM19143

value: lymphoblastoid cell line GM19143


title: HapMap YRI sample GM19141

value: lymphoblastoid cell line GM19141


title: WSU-NHL (105689532)

description: WSU-NHL replicate 1

value: DLBCL cell line WSU-NHL

value: first biological rep (105689)

value: BCL2 mutation

value: doxorubicin-sensitive


title: VAL1 (105690532)

description: VAL1  replicate 1

value: DLBCL cell line VAL1

value: first biological rep (105690)

value: BCL2/CMYC mutation

value: doxorubicin-resistant


title: HapMap YRI sample GM19140

value: lymphoblastoid cell line GM19140


title: HapMap YRI sample GM19138

value: lymphoblastoid cell line GM19138


title: rice leaves under SD condition, biological rep 1 (1P-SSD)

description:
081010-Rice-08290A_1P-SSD.CHP
081010-Rice-08290A_1P-SSD.CEL
Gene expression data from the second fully expanded leaf under SD condition at pistil/stamen primordium forming stage

value: the second fully expanded leaf

value: Nongken 58S

value: pistil/stamen primordium forming stage

value: SD


title: rice leaves under LD condition, biological rep 1 (1P-SLD)

description:
081010-Rice-08290A_1P-SLD.CHP
081010-Rice-08290A_1P-SLD.CEL
Gene expression data from the second fully expanded leaf under LD condition at pistil/stamen primordium forming stage

value: LD


title: HapMap YRI sample GM19137

value: lymphoblastoid cell line GM19137

value: pooled all lymphoblastoid cell lines evaluated


title: HapMap YRI sample GM19127

value: lymphoblastoid cell line GM19127


title: HapMap YRI sample GM19116

value: lymphoblastoid cell line GM19116


title: HapMap YRI sample GM19119

value: lymphoblastoid cell line GM19119


title: HapMap YRI sample GM19131

value: lymphoblastoid cell line GM19131


title: HapMap YRI sample GM19128

value: lymphoblastoid cell line GM19128


title: HapMap YRI sample GM19093

value: lymphoblastoid cell line GM19093


title: HapMap YRI sample GM19098

value: lymphoblastoid cell line GM19098


title: HapMap YRI sample GM18913

value: lymphoblastoid cell line GM18913


title: HapMap YRI sample GM18853

value: lymphoblastoid cell line GM18853


title: HapMap YRI sample GM19130

value: lymphoblastoid cell line GM19130


title: HapMap YRI sample GM19101

value: lymphoblastoid cell line GM19101


title: HapMap YRI sample GM18861

value: lymphoblastoid cell line GM18861


title: HapMap YRI sample GM18862

value: lymphoblastoid cell line GM18862


title: HapMap YRI sample GM18858

value: lymphoblastoid cell line GM18858


title: HapMap YRI sample GM18870

value: lymphoblastoid cell line GM18870


title: HapMap YRI sample GM18523

value: lymphoblastoid cell line GM18523


title: HapMap YRI sample GM18852

value: lymphoblastoid cell line GM18852

value: pooled all lymphoblastoid cell lines evaluated


title: HapMap YRI sample GM18855

value: lymphoblastoid cell line GM18855


title: HapMap YRI sample GM18912

value: lymphoblastoid cell line GM18912


title: HapMap YRI sample GM18517

value: lymphoblastoid cell line GM18517


title: HapMap YRI sample GM18856

value: lymphoblastoid cell line GM18856


title: HapMap YRI sample GM19102

value: lymphoblastoid cell line GM19102


title: HapMap YRI sample GM18516

value: lymphoblastoid cell line GM18516


title: HapMap YRI sample GM18508-A

value: lymphoblastoid cell line GM18508-A


title: HapMap YRI sample GM18504

value: lymphoblastoid cell line GM18504


title: HapMap YRI sample GM18522

value: lymphoblastoid cell line GM18522


title: HapMap YRI sample GM18507

value: lymphoblastoid cell line GM18507


title: HapMap YRI sample GM18502

value: lymphoblastoid cell line GM18502


title: HapMap YRI sample GM18501

value: lymphoblastoid cell line GM18501


title: HapMap CEU sample GM12892

value: lymphoblastoid cell line GM12892


title: HapMap CEU sample GM12891

value: lymphoblastoid cell line GM12891


title: HapMap CEU sample GM12874

value: lymphoblastoid cell line GM12874


title: HapMap CEU sample GM12875

value: lymphoblastoid cell line GM12875


title: HapMap CEU sample GM12814

value: lymphoblastoid cell line GM12814

value: pooled all lymphoblastoid cell lines evaluated


title: HapMap CEU sample GM12815

value: lymphoblastoid cell line GM12815


title: HapMap CEU sample GM12872

value: lymphoblastoid cell line GM12872


title: HapMap CEU sample GM12873

value: lymphoblastoid cell line GM12873


title: HapMap CEU sample GM12812

value: lymphoblastoid cell line GM12812


title: HapMap CEU sample GM12763

value: lymphoblastoid cell line GM12763


title: HapMap CEU sample GM12146

value: lymphoblastoid cell line GM12146


title: HapMap CEU sample GM12248

value: lymphoblastoid cell line GM12248


title: HapMap CEU sample GM12760

value: lymphoblastoid cell line GM12760


title: HapMap CEU sample GM12762

value: lymphoblastoid cell line GM12762


title: HapMap CEU sample GM12154

value: lymphoblastoid cell line GM12154


title: HapMap CEU sample GM12145

value: lymphoblastoid cell line GM12145


title: HapMap CEU sample GM12751

value: lymphoblastoid cell line GM12751


title: HapMap CEU sample GM12234

value: lymphoblastoid cell line GM12234


title: HapMap CEU sample GM12750

value: lymphoblastoid cell line GM12750


title: HapMap CEU sample GM12249

value: lymphoblastoid cell line GM12249


title: HapMap CEU sample GM12155

value: lymphoblastoid cell line GM12155


title: HapMap CEU sample GM12239

value: lymphoblastoid cell line GM12239

value: pooled all lymphoblastoid cell lines evaluated


title: HapMap CEU sample GM12761

value: lymphoblastoid cell line GM12761


title: HapMap CEU sample GM12144

value: lymphoblastoid cell line GM12144


title: HapMap CEU sample GM12717

value: lymphoblastoid cell line GM12717


title: HapMap CEU sample GM12043

value: lymphoblastoid cell line GM12043


title: HapMap CEU sample GM12006

value: lymphoblastoid cell line GM12006


title: HapMap CEU sample GM12044

value: lymphoblastoid cell line GM12044


title: HapMap CEU sample GM12005

value: lymphoblastoid cell line GM12005


title: HapMap CEU sample GM12057

value: lymphoblastoid cell line GM12057


title: HapMap CEU sample GM12004

value: lymphoblastoid cell line GM12004


title: HapMap CEU sample GM11994

value: lymphoblastoid cell line GM11994


title: HapMap CEU sample GM12003

value: lymphoblastoid cell line GM12003


title: HapMap CEU sample GM11995

value: lymphoblastoid cell line GM11995


title: HapMap CEU sample GM11993

value: lymphoblastoid cell line GM11993


title: HapMap CEU sample GM11881

value: lymphoblastoid cell line GM11881


title: HapMap CEU sample GM11840

value: lymphoblastoid cell line GM11840


title: HapMap CEU sample GM11992

value: lymphoblastoid cell line GM11992


title: HapMap CEU sample GM11832

value: lymphoblastoid cell line GM11832

value: pooled all lymphoblastoid cell lines evaluated


title: HapMap CEU sample GM11839

value: lymphoblastoid cell line GM11839


title: HapMap CEU sample GM11831

value: lymphoblastoid cell line GM11831


title: HapMap CEU sample GM07345

value: lymphoblastoid cell line GM07345


title: HapMap CEU sample GM06985

value: lymphoblastoid cell line GM06985


title: HapMap CEU sample GM06994

value: lymphoblastoid cell line GM06994


title: HapMap CEU sample GM11829

value: lymphoblastoid cell line GM11829


title: HapMap CEU sample GM11830

value: lymphoblastoid cell line GM11830


title: HapMap CEU sample GM07055

value: lymphoblastoid cell line GM07055


title: HapMap CEU sample GM07056

value: lymphoblastoid cell line GM07056


title: HapMap CEU sample GM07000

value: lymphoblastoid cell line GM07000


title: HapMap CEU sample GM07034

value: lymphoblastoid cell line GM07034


title: HapMap CEU sample GM07022

value: lymphoblastoid cell line GM07022


title: HapMap CEU sample GM06993

value: lymphoblastoid cell line GM06993


title: HapMap CEU sample GM07357

value: lymphoblastoid cell line GM07357


title: Anther-2.0mm MuKiller Rep1 KG4 (Cy5)

status: Public on Jul 28 2012

city: Stanford

first: John

middle: F

last: Fernandes

state: CA

address: 385 Serra Mall

department: Bio Sci

institute: Stanford University

description:
Cy5-48-1
Mu killer line at the 2.0mm anther stage; Cy5.

hyb_protocol: 750 ng of each labeled target cRNA were hybridized for 17 h at 60C.

scan_protocol: Slides were scanned on an Agilent G2565AA microarray scanner as indicated in the manual. Images were processed with the Agilent Feature Extraction software.

data_processing:
After removal of spots flagged by Feature Extraction as below background or saturated or outliers, dye-normalized values for each channel from Feature Extraction were normalized again to the median array intensity. Average intensities were then calculated for probes with at least 3 of 4 good intensities.
Using the limma package of the R programming environment, the median intensities for each channel were normalized within each array using loess and between arrays using the quantile method.

label_protocol: Total RNA (500 ng) was amplified and labeled with Cy5 or Cy3 using the Agilent Low RNA Input Fluorescent Linear Amplification Kit.

growth_protocol: Plants were grown and dissected at the Stanford field. Tissues were collected and frozen in liquid nitrogen immediately.

extract_protocol: Total RNA was extracted from 30-60 ug of frozen tissues with the Qiagen RNeasy Mini kit, digested with DNase I, and cleaned up with RNeasy columns.

treatment_protocol: None.

tag: line

value: Mu killer

value: anther

tag: Stage


title: 2E9 reactive cell line 2_rep3

city: London

first: Adrian

last: Hayday

address: St Thomas' Street

department: Immunobiology

country: United Kingdom

institute: King's College London, Guy's Campus

description:
Sample ID: U937 3
replicate 3
1905522048_F

hyb_protocol: Illumina standard hyb protocol

scan_protocol: Illumina standard scanning protocol

data_processing: Normalization: Rank Invariant (BeadStudio version 2.3.41)

source_name: U937 cell line

label_protocol: Ambion RNA Amplification Kit

extract_protocol: Qiagen RNA Purification Kit

tag: 2e9 reactivity

value: 2E9 reactive


title: 2E9 non-reactive cell line 2_rep2

description:
Sample ID: Hutu-80 2
replicate 2
1905522009_E

source_name: Hutu-80 cell line

value: 2E9 non-reactive


title: 2E9 reactive cell line 2_rep2

description:
Sample ID: U937 2
replicate 2
1905522048_E


title: Rec15_mde2∆

city: Kisarazu

first: Kazuto

last: Kugou

state: Chiba

address: 2-6-7 KazusaKamatatri

department: Department of Frontier Research

country: Japan

institute: Kazusa DNA Research Institute

hyb_protocol: 16 h at 45C using a hybridization oven 640 (Affymetrix) as described in the Affymetrix Chromatin Immunoprecipitation Assay Protocol (P/N 702238 Rev. 3).

scan_protocol: Fluidics station 400 protocol Midi-euk2.v3 (Affymetrix) was performed to wash and stain arrays. The arrays were scanned on a GeneChip Scanner 3000 7G (Affymetrix).

data_processing:
Quantile normalization and calculation of MA statistics (bar file) were performed with CisGenome v2 (Ji et al., 2008, PMID 18978777).
Quantile normalization was applied to adjust differences in the signal intensity distribution across all used tiling arrays using the tilemapv2_importaffy function with the default setting. Then, MA statistics was applied to predict protein-binding regions using the tilemapv2 function with some modifications ([Method to Compute FDR] = UMS, [W] = 38, [Window Boundary] = 750, [Standardize MA Statistics] = No, [Region Boundary Cutoff, MA>] = 0.33, [Max Gap within a Region] = 750, [Max Run of Insignificant Probes within a Region] = 25, [Min Region Length] = 750, [Min No. of Significant Probes within a Region] = 25). Each IP sample was compared to the corresponding input sample.
The bar files represent signal enrichment (IP vs. Input).

organism: Schizosaccharomyces pombe

source_name: Rec15 ChIP DNA from mde2∆ cells at 4 hours after meiotic induction

label_protocol: Immunoprecipitated DNA and input DNA were amplified and end-labeled with the IVT (in vitro transcription). The amplification method is as described elsewhere (Katou et al., 2006, PMID 16793414).

growth_protocol: For the synchronous induction of meiosis, the pat1-114 mutant strain was cultured in EMM medium containing nitrogen (0.5% NH4Cl) at 25ºC. This culture was washed and re-suspended in EMM medium without nitrogen and starved for 20 h at 25ºC to arrest the cell cycle in G1. The cells were then released into EMM containing nitrogen (0.05% NH4Cl) at 34ºC to allow for synchronous progression into meiosis.

extract_protocol:
To tag Rec15 with the Flag epitope at the C-terminus, we amplified the rec15+ ORF by PCR with a primer set of TM19 (5'-CCGCTCGAGCTGTTATTCGTCTTGCTGAG-3') and TM20 (5'-ATAAGAATGCGGCCGCAATAATCGTCATCTGCTAAGAA-3') using wild-type genomic DNA as a template. The PvuII-NotI fragment was then cloned into pTM506, which contained three copies of Flag epitope and a kanMX6 marker (pOTM79). pOTM79 was linearized at the HincII site in rec15+ and used for transformation.
ChIP assay was performed as described previously (Hirota et al., 2007, PMID 17827346).

tag: genotype/variation

tag: culture

value: Meiosis 4 hours

tag: chip antibody

value: FLAG M2 mouse monoclonal

tag: chip antibody vendor

value: SIGMA

tag: chip antibody lot#

tag: chip antibody catalog#

source_name: Input DNA from mde2∆ cells at 4 hours after meiotic induction


title: 2E9 non-reactive cell line 1_rep3

description:
Sample ID: HuH-7 3
replicate 3
1905522009_C

source_name: HuH-7 cell line

tag: cell line


title: Mde2_wild_type

source_name: Mde2 ChIP DNA from wild type cells at 4 hours after meiotic induction

extract_protocol:
To tag Mde2 with the Flag epitope at the C-terminus, we amplified the mde2+ ORF by PCR with a primer set of TM416 (5'-CCGCTCGAGGAACTGTGACAGCGTTTGAC-3') and TM417 (5'-ATAAGAATGCGGCCGCAGTACTGTAAAACTTCATCTAA-3') using wild-type genomic DNA as a template. The XhoI-NotI fragment was cloned into pTM506, which contained three copies of Flag epitope and a kanMX6 marker (pOTM194). pOTM194 was linearized at the EcoT22I site in mde2+ and used for transformation.
ChIP assay was performed as described previously (Hirota et al., 2007, PMID 17827346).

value: wild type (pat1-114)


title: Mde2_rec15∆

source_name: Mde2 ChIP DNA from rec15∆ cells at 4 hours after meiotic induction


title: 2E9 non-reactive cell line 1_rep1

description:
Sample ID: HuH-7 1
replicate 1
1905522009_A


title: Anther-2.0mm MuActive Rep4 AG1 (Cy5)

description:
Cy5-48-4
Mu active line at the 2.0mm anther stage; Cy5.

value: Mu active


title: 2E9 non-reactive cell line 2_rep1

description:
Sample ID: Hutu-80 1
replicate 1
1905522009_D


title: Anther-2.0mm MuActive Rep3 AG2 (Cy5)

description:
Cy5-48-3
Mu active line at the 2.0mm anther stage; Cy5.


title: 2E9 reactive cell line 2_rep1

description:
Sample ID: U937 1
replicate 1
1905522048_D


title: 2E9 non-reactive cell line 1_rep2

description:
Sample ID: HuH-7 2
replicate 2
1905522009_B


title: 2E9 reactive cell line 1_rep1

description:
Sample ID: K562 1
replicate 1
1905522048_A

source_name: K562 cell line


title: Anther-1.0mm MuActive Rep4 AE1 (Cy5)

description:
Cy5-47-4
Mu active line at the 1.0mm anther stage; Cy5.


title: 2E9 reactive cell line 1_rep2

description:
Sample ID: K562 2
replicate 2
1905522048_B


title: 2E9 non-reactive cell line 2_rep3

description:
Sample ID: Hutu-80 3
replicate 3
1905522009_F


title: Anther-1.0mm MuKiller Rep1 KE4 (Cy5)

description:
Cy5-47-1
Mu killer line at the 1.0mm anther stage; Cy5.


title: Anther-2.0mm MuActive Rep4 AG1 (Cy3)

description:
Cy3-48-4
Mu active line at the 2.0mm anther stage; Cy3.


title: Anther-2.0mm MuKiller Rep2 KG3 (Cy5)

description:
Cy5-48-2
Mu killer line at the 2.0mm anther stage; Cy5.


title: OCSC, IL17,6h, rep1

city: chongqing

first: tong

last: xiang

address: xinqiao

institute: xinqiao hospital

description: Gene expression in ovarian cancer stem cells

hyb_protocol: The labeled cRNAs were hybridized onto the Whole Genome Oligo Array (4x44K, Agilent Technologies).

scan_protocol: After having washed the slides, the arrays were scanned by the Agilent Scanner G2505B.

data_processing:
The scanned images were analyzed with Agilent Feature Extraction software (version 10.5.1.1).
Raw signal intensities were normalized in Median method by GeneSpring GX v11.5.1, and low intensity genes were filtered (Genes that at least 2 out of 3 samples have flags in Detected were chosen for further analysis).

source_name: ovarian cancer stem cell, IL17,6h, replicate 1

label_protocol: 1 μg of total RNA from each sample was amplified and transcribed into fluorescent cRNA with using the manufacturer’s Agilent’s Quick Amp Labeling protocol (version 5.7, Agilent Technologies).

growth_protocol: ovarian cancer stem cells from A2780 cell line was maintain in serum-free DMEM/F12 supplemented with 10 ng/mL basic fibroblast growth factor , 20 ng/mL epidermal growth factor , 5 μg/mL insulin, 0.4% bovine serum albumin.

extract_protocol: RNA was extracted using Trizol. Total RNA from each sample was quantified by the NanoDrop ND-1000 and RNA integrity was assessed by standard denaturing agarose gel electrophoresis

treatment_protocol: ovarian cancer stem cells from A2780 cell line was stimulated by IL17A in the stem cell medium.The cultures were incubated for 4 or 6 hours at 37 ºC in a humidified incubator with 5% CO2.

tag: cell type

value: A2780-derived ovarian cancer stem cell


title: OCSC, IL17,4h, rep1

source_name: ovarian cancer stem cell, IL17,4h, replicate 1


title: Anther-1.0mm MuActive Rep3 AE2 (Cy5)

description:
Cy5-47-3
Mu active line at the 1.0mm anther stage; Cy5.


title: 2E9 reactive cell line 1_rep3

description:
Sample ID: K562 3
replicate 3
1905522048_C


title: zebrafish embryo at 36 hpf DMSO, biological rep3

city: Boston

first: Anthony

middle: Dominc

last: DiBiase

state: MA

address: KFRB, 1 Blackfan St, Suite 8216

department: Hem/Onc

institute: Children's Hospital Boston

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Zebrafish Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: The data were analyzed with Goldenspike (http://www2.ccr.buffalo.edu/halfon/spike/). This R package background-corrects, normalizes, multiple-tests, and computes the sample statistics below.

organism: Danio rerio

source_name: pooled mRNA from  whole embryo at 36 hpf treated with DMSO

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: embryos were synchronized for the fertilization time and grew at 28 degree the whole time.

treatment_protocol: Embryos were treated with DMSO or 5 uM 11,12-EET between 24-36 hpf. Embryos were dechorionated with pronase and homogenized in the Trizol solution (GibcoBRL). 25 embryos were used per treatment group.

value: Dechorionated embryo

tag: genotype

value: Wild type AB

tag: age

value: embryos at 36 hours post fertilization

tag: treatment

value: DMSO


title: zebrafish embryo at 36 hpf EET, biological rep1

source_name: pooled mRNA from  whole embryo at 36 hpf treated with 5uM 11,12-EET


title: Rec15_rec24∆

source_name: Rec15 ChIP DNA from rec24d cells at 4 hours after meiotic induction

source_name: Input DNA from rec24d cells at 4 hours after meiotic induction


title: Anther-1.0mm MuKiller Rep2 KE3 (Cy5)

description:
Cy5-47-2
Mu killer line at the 1.0mm anther stage; Cy5.


title: zebrafish embryo at 36 hpf EET, biological rep3


title: zebrafish embryo at 36 hpf EET, biological rep2


title: Rec15_rec10∆

source_name: Rec15 ChIP DNA from rec10∆ cells at 4 hours after meiotic induction

source_name: Input DNA from rec10∆ cells at 4 hours after meiotic induction


title: Rec15_wild_type

source_name: Rec15 ChIP DNA from wild type cells at 4 hours after meiotic induction

source_name: Input DNA from wild type cells at 4 hours after meiotic induction


title: Rec10_wild_type

source_name: Rec10 ChIP DNA from wild type cells at 4 hours after meiotic induction

extract_protocol:
To tag Rec10 with the Flag epitope at the C-terminus, we amplified the rec10+ ORF by PCR with a primer set of TM390 (5'- GGAATTCGACATATTTTCTGAGTTTCTCAA-3') and TM389 (5'- ATAAGAATGCGGCCGCACTTAAACATCAAACTGTCAATTTG-3') using wild-type genomic DNA as a template. The EcoRI-NotI fragment was then cloned into pTM506, which contained three copies of Flag epitope and a kanMX6 marker (pOTM157). pOTM157 was linearized at the EcoT14I site in rec10+ and used for transformation.
ChIP assay was performed as described previously (Hirota et al., 2007, PMID 17827346).


title: OCSC,  rep1

source_name: ovarian cancer stem cell,  replicate 1


title: Rat VSMC 0 hr after 2.6 mM high-phosphate stimulation

city: Beijing

last: Kong

address: 38#, Xueyuan Street, Haidian district

department: Department of Physiology and Pathophysiology

institute: Peking University Health Science Center

description: This sample is harvested at 0 hr after 2.6 mM high-phosphate stimulated. It is the first of three sample used in this experiment, each from separate cultures.

hyb_protocol: After stopping the labeling procedure, the Hy3TM-labeled samples were hybridized on the miRCURYTM LNA Array (v.16.0) (Exiqon) according to array manual. The total 25 μL mixture from Hy3TM-labeled samples with 25 μL hybridization buffer were first denatured for 2 min at 95°C, incubated on ice for 2 min and then hybridized to the microarray for 16–20 h at 56°C in a 12-Bay Hybridization Systems (Hybridization System - Nimblegen Systems, Inc., Madison, WI, USA), which provides an active mixing action and constant incubation temperature to improve hybridization uniformity and enhance signal. Following hybridization, the slides were achieved, washed several times using Wash buffer kit (Exiqon), and finally dried by centrifugation for 5 min at 400 rpm.

scan_protocol: The slides were scanned using the Axon GenePix 4000B microarray scanner (Axon Instruments, Foster City, CA). Scanned images were then imported into GenePix Pro 6.0 software (Axon) for grid alignment and data extraction.

data_processing: Replicated miRNAs were averaged and miRNAs that intensities>50 in all samples were chosen for calculating normalization factor. Expressed data were normalized using the Median normalization. After normalization, differentially expressed miRNAs were identified through Fold Change filtering.

organism: Rattus norvegicus

source_name: Rat vascular smoooth muscle cells, 0 hr after high-phosphate stimulated

label_protocol: After RNA isolation from the samples, the miRCURY™ Hy3™/Hy5™ Power labeling kit (Exiqon, Vedbaek, Denmark) was used according to the manufacturer’s guideline for miRNA labelling. One microgram of each sample was 3'-end-labeled with Hy3TM fluorescent label, using T4 RNA ligase by the following procedure: RNA in 2.0 μL of water was combined with 1.0 μL of CIP buffer and CIP (Exiqon). The mixture was incubated for 30 min at 37°C, and was terminated by incubation for 5 min at 95°C. Then 3.0 μL of labeling buffer, 1.5 μL of fluorescent label (Hy3TM), 2.0 μL of DMSO, 2.0 μL of labeling enzyme were added into the mixture. The labeling reaction was incubated for 1 h at 16°C, and terminated by incubation for 15 min at 65°C.

growth_protocol: The rat VSMCs were maintained in Dulbecco modified Eagle medium (DMEM) supplemented with 10% fetal bovine serum at 37℃ in a humidified atmosphere containing 5% CO2.

extract_protocol: Total RNA was isolated using TRIzol (Invitrogen) and miRNeasy mini kit (QIAGEN) according to manufacturer’s instructions, which efficiently recovered all RNA species, including miRNAs. RNA quality and quantity was measured by using nanodrop spectrophotometer (ND-1000, Nanodrop Technologies) and RNA Integrity was determined by gel electrophoresis.

treatment_protocol: Calcification of rat VSMCs was induced by incubation in calcifying media containing 2.6 mM phosphate and the RNA of rat VMSCs were harveated at 0, 3, 12 hr after 2.6 mM phosphate stimulated.

value: vascular smoooth muscle cells

value: control

tag: time

value: 0 h


title: zebrafish embryo at 36 hpf DMSO, biological rep2

tag: tissue


title: Rat VSMC 3 hr after 2.6 mM high-phosphate stimulation

description: This sample is harvested at 3 hr after 2.6 mM high-phosphate stimulated. It is the first of three sample used in this experiment, each from separate cultures.

source_name: Rat vascular smoooth muscle cells, 3 hr after high-phosphate stimulated

value: high phosphate

value: 3 h


title: Anther-2.0mm MuActive Rep3 AG2 (Cy3)

description:
Cy3-48-3
Mu active line at the 2.0mm anther stage; Cy3.

value: anther


title: Anther-2.0mm MuKiller Rep2 KG3 (Cy3)

description:
Cy3-48-2
Mu killer line at the 2.0mm anther stage; Cy3.

value: Mu killer


title: Rat VSMC 12 hr after 2.6 mM high-phosphate stimulation

description: This sample is harvested at 12 hr after 2.6 mM high-phosphate stimulated. It is the first of three sample used in this experiment, each from separate cultures.

source_name: Rat vascular smoooth muscle cells, 12 hr after high-phosphate stimulated


title: Olig1-WT

last: Alberta

address: 450 Brookline Ave.

institute: Dana-Farber Cancer Institute

description: Gene expression from embryonic day 14.5 mouse ganglionic eminence cells.

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome 430A 2.0 array.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

label: Biotin

organism: Mus musculus

source_name: mouse E14.5 ganglionic eminences

growth_protocol: Serum-free neural stem cell media supplemented with EGF

value: neural stem cell

value: wild type

tag: genetic background


title: Anther-1.0mm MuActive Rep4 AE1 (Cy3)

description:
Cy3-47-4
Mu active line at the 1.0mm anther stage; Cy3.

tag: line


title: Anther-1.0mm MuActive Rep3 AE2 (Cy3)

description:
Cy3-47-3
Mu active line at the 1.0mm anther stage; Cy3.

tag: Stage


title: Olig1-KO

description: Gene expression from embryonic day 14.5 Olig1-KO mouse ganglionic eminence cells.

value: Olig1 KO


title: Anther-1.0mm MuKiller Rep2 KE3 (Cy3)

description:
Cy3-47-2
Mu killer line at the 1.0mm anther stage; Cy3.


title: PyMT control 3

city: Dallas

first: Thomas

middle: Nathan

last: Person

state: Texas

address: 5323 Harry Hines Blvd

department: Clinical Sciences

institute: UT Southwestern

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were normalised using quantile normalisation with IlluminaGUI in R

source_name: Tumor tissues

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

extract_protocol: RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

tag: gender

value: Female

tag: strain

value: FVB (pure)

value: tumor

value: 12 wk

tag: transgene

value: PyMT control


title: PyMT control 2


title: PyMT/ETP (PyMT/C5) 3

value: PyMT/ETP (PyMT/C5)


title: PyMT/ETP (PyMT/C5) 2


title: Anther-1.0mm MuKiller Rep1 KE4 (Cy3)

description:
Cy3-47-1
Mu killer line at the 1.0mm anther stage; Cy3.


title: Anther-2.0mm MuKiller Rep1 KG4 (Cy3)

description:
Cy3-48-1
Mu killer line at the 2.0mm anther stage; Cy3.


title: PyMT/ETP (PyMT/C5) 1


title: Olig1-KO#37


title: PyMT control 1


title: zebrafish embryo at 36 hpf DMSO, biological rep1

value: Dechorionated embryo

value: Wild type AB

value: embryos at 36 hours post fertilization

value: DMSO


title: Primary medulloblastoma_MT907_MDT-MB-1012 [SNP]

status: Public on Jul 27 2012

city: HEIDELBERG

first: Paul

middle: A.

last: Northcott

address: Im Neuenheimer Feld 280

country: Germany

institute: German Cancer Research Center (DKFZ)

hyb_protocol: As directed by the manufacturer (Affymetrix)

data_processing: SNP genotyping was performed using the birdseed algorithm (v2) available in Affymetrix Genotyping Console 4.0.  For copy number analysis, CEL files were quantile normalized and signal intensities estimated using the MBEI method in dChip.

source_name: Primary medulloblastoma

extract_protocol: High molecular weight genomic DNA was extracted from primary tissue and cell lines using either the standard SDS/Proteinase K method or Qiagen DNEasy Blood and Tissue Kits.

value: Primary medulloblastoma

value: M

tag: histological subtype

value: Desmoplastic

tag: subgroup


title: Primary medulloblastoma sample_MDT-MB-1333 [SNP]

scan_protocol: As directed by the manufacturer (Affymetrix)

value: SHH


title: Primary medulloblastoma sample_MDT-MB-1332 [SNP]

label_protocol: As directed by the manufacturer (Affymetrix)


title: Primary medulloblastoma sample_MDT-MB-1335 [SNP]

value: Classic

value: WNT


title: Medulloblastoma cell line_MED1 [SNP]

source_name: Medulloblastoma cell line

value: Medulloblastoma


title: Medulloblastoma cell line_MED8A [SNP]


title: Medulloblastoma cell line_UW228 [SNP]


title: Medulloblastoma cell line_D283 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1375 [SNP]

value: F

value: Large Cell/Anaplastic


title: Primary medulloblastoma_MT948_MDT-MB-1053 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1377 [SNP]

value: Group 3


title: Medulloblastoma cell line_DAOY [SNP]

description: DAOY

value: DAOY


title: Medulloblastoma cell line_D341 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1361 [SNP]

value: Group 4


title: Primary medulloblastoma sample_MDT-MB-1362 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1368 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1360 [SNP]


title: Medulloblastoma cell line_D425 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1366 [SNP]


title: Medulloblastoma cell line_D458 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1374 [SNP]


title: Medulloblastoma cell line_RES256 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1369 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1359 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1364 [SNP]


title: Medulloblastoma cell line_ONS76 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1358 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1355 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1357 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1354 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1356 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1380 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1348 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1353 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1352 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1346 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1339 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1338 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1376 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1330 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1350 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1342 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1343 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1365 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1351 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1341 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1336 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1327 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1329 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1326 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1325 [SNP]

value: MBEN


title: Primary medulloblastoma sample_MDT-MB-1331 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1340 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1323 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1328 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1318 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1321 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1319 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1320 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1309 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1315 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1314 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1317 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1345 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1313 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1310 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1302 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1295 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1301 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1307 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1308 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1297 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1303 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1299 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1349 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1305 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1298 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1311 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1291 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1292 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1306 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1284 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1286 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1290 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1294 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1287 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1285 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1280 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1276 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1281 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1273 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1270 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1269 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1277 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1264 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1272 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1278 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1275 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1279 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1262 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1274 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1300 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1263 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1261 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1268 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1266 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1293 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1289 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1267 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1282 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1253 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1251 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1249 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1260 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1254 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1252 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1250 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1255 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1248 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1259 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1245 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1242 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1243 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1256 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1240 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1247 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1296 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1246 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1258 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1237 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1235 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1236 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1230 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1234 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1233 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1257 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1238 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1224 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1226 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1228 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1220 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1221 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1225 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1222 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1213 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1215 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1217 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1212 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1214 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1210 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1208 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1209 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1218 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1207 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1206 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1216 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1211 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1200 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1244 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1198 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1239 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1199 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1201 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1205 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1194 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1195 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1196 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1204 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1202 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1192 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1185 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1191 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1188 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1186 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1197 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1183 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1187 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1190 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1175 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1174 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1189 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1168 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1179 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1169 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1173 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1193 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1166 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1161 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1167 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1170 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1181 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1162 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1156 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1171 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1155 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1159 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1165 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1160 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1154 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1151 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1149 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1177 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1152 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1148 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1164 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1153 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1145 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1163 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1144 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1143 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1158 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1142 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1147 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1140 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1141 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1139 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1150 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1138 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1137 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1131 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1132 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1135 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1134 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1126 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1136 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1129 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1122 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1114 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1116 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1130 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1124 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1110 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1115 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1109 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1112 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1146 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1111 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1120 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1108 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1106 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1125 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1103 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1128 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1133 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1105 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1121 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1104 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1101 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1091 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1113 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1100 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1089 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1092 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1086 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1117 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1087 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1088 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1078 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1077 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1107 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1076 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1082 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1080 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1074 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1102 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1127 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1090 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1084 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1072 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1070 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1066 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1060 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1063 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1065 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1067 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1057 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1055 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1064 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1056 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1069 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1054 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1040 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1038 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1045 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1049 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1053 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1036 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1048 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1037 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1059 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1061 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1041 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1042 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1032 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1034 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1035 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1058 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1029 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1026 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1027 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1046 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1031 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1025 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1043 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1028 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1023 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1022 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1018 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1024 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1030 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1014 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1012 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1020 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1015 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1010 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1021 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1009 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1004 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1002 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1003 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1013 [SNP]


title: Primary medulloblastoma sample_MDT-MB-994 [SNP]


title: Primary medulloblastoma sample_MDT-MB-997 [SNP]


title: Primary medulloblastoma sample_MDT-MB-998 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1017 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1000 [SNP]


title: Primary medulloblastoma sample_MDT-MB-996 [SNP]


title: Primary medulloblastoma sample_MDT-MB-993 [SNP]


title: Primary medulloblastoma sample_MDT-MB-995 [SNP]


title: Primary medulloblastoma sample_MDT-MB-989 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1016 [SNP]


title: Primary medulloblastoma sample_MDT-MB-991 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1011 [SNP]


title: Primary medulloblastoma sample_MDT-MB-988 [SNP]


title: Primary medulloblastoma sample_MDT-MB-986 [SNP]


title: Primary medulloblastoma sample_MDT-MB-987 [SNP]


title: Primary medulloblastoma sample_MDT-MB-992 [SNP]


title: Primary medulloblastoma sample_MDT-MB-999 [SNP]


title: Primary medulloblastoma sample_MDT-MB-981 [SNP]


title: Primary medulloblastoma sample_MDT-MB-977 [SNP]


title: Primary medulloblastoma sample_MDT-MB-983 [SNP]


title: Primary medulloblastoma sample_MDT-MB-982 [SNP]


title: Primary medulloblastoma sample_MDT-MB-980 [SNP]


title: Primary medulloblastoma sample_MDT-MB-978 [SNP]


title: Primary medulloblastoma sample_MDT-MB-972 [SNP]


title: Primary medulloblastoma sample_MDT-MB-1005 [SNP]


title: Primary medulloblastoma sample_MDT-MB-973 [SNP]


title: Primary medulloblastoma sample_MDT-MB-974 [SNP]


title: Primary medulloblastoma sample_MDT-MB-962 [SNP]


title: Primary medulloblastoma sample_MDT-MB-967 [SNP]


title: Primary medulloblastoma sample_MDT-MB-969 [SNP]


title: Primary medulloblastoma sample_MDT-MB-961 [SNP]


title: Primary medulloblastoma sample_MDT-MB-956 [SNP]


title: Primary medulloblastoma sample_MDT-MB-965 [SNP]


title: Primary medulloblastoma sample_MDT-MB-964 [SNP]


title: Primary medulloblastoma sample_MDT-MB-954 [SNP]


title: Primary medulloblastoma sample_MDT-MB-984 [SNP]


title: Primary medulloblastoma sample_MDT-MB-957 [SNP]


title: Primary medulloblastoma sample_MDT-MB-960 [SNP]


title: Primary medulloblastoma sample_MDT-MB-952 [SNP]


title: Primary medulloblastoma sample_MDT-MB-950 [SNP]


title: Primary medulloblastoma sample_MDT-MB-945 [SNP]


title: Primary medulloblastoma sample_MDT-MB-955 [SNP]


title: Primary medulloblastoma sample_MDT-MB-949 [SNP]


title: Primary medulloblastoma sample_MDT-MB-968 [SNP]


title: Primary medulloblastoma sample_MDT-MB-943 [SNP]


title: Primary medulloblastoma sample_MDT-MB-946 [SNP]


title: Primary medulloblastoma sample_MDT-MB-975 [SNP]


title: Primary medulloblastoma sample_MDT-MB-942 [SNP]


title: Primary medulloblastoma sample_MDT-MB-936 [SNP]


title: Primary medulloblastoma sample_MDT-MB-947 [SNP]


title: Primary medulloblastoma sample_MDT-MB-948 [SNP]


title: Primary medulloblastoma sample_MDT-MB-935 [SNP]


title: Primary medulloblastoma sample_MDT-MB-941 [SNP]


title: Primary medulloblastoma sample_MDT-MB-931 [SNP]


title: Primary medulloblastoma sample_MDT-MB-944 [SNP]


title: Primary medulloblastoma sample_MDT-MB-953 [SNP]


title: Primary medulloblastoma sample_MDT-MB-930 [SNP]


title: Primary medulloblastoma sample_MDT-MB-928 [SNP]


title: Primary medulloblastoma sample_MDT-MB-933 [SNP]


title: Primary medulloblastoma sample_MDT-MB-921 [SNP]


title: Primary medulloblastoma sample_MDT-MB-925 [SNP]


title: Primary medulloblastoma sample_MDT-MB-923 [SNP]


title: Primary medulloblastoma sample_MDT-MB-922 [SNP]


title: Primary medulloblastoma sample_MDT-MB-932 [SNP]


title: Primary medulloblastoma sample_MDT-MB-929 [SNP]


title: Primary medulloblastoma sample_MDT-MB-916 [SNP]


title: Primary medulloblastoma sample_MDT-MB-915 [SNP]


title: Primary medulloblastoma sample_MDT-MB-920 [SNP]


title: Primary medulloblastoma sample_MDT-MB-918 [SNP]


title: Primary medulloblastoma sample_MDT-MB-934 [SNP]


title: Primary medulloblastoma sample_MDT-MB-913 [SNP]


title: Primary medulloblastoma sample_MDT-MB-917 [SNP]


title: Primary medulloblastoma sample_MDT-MB-909 [SNP]


title: Primary medulloblastoma sample_MDT-MB-911 [SNP]


title: Primary medulloblastoma sample_MDT-MB-976 [SNP]


title: Primary medulloblastoma sample_MDT-MB-907 [SNP]


title: Primary medulloblastoma sample_MDT-MB-905 [SNP]


title: Primary medulloblastoma sample_MDT-MB-927 [SNP]


title: Primary medulloblastoma sample_MDT-MB-914 [SNP]


title: Primary medulloblastoma sample_MDT-MB-904 [SNP]


title: Primary medulloblastoma sample_MDT-MB-903 [SNP]


title: Primary medulloblastoma sample_MDT-MB-901 [SNP]


title: Primary medulloblastoma sample_MDT-MB-912 [SNP]


title: Primary medulloblastoma sample_MDT-MB-908 [SNP]


title: Primary medulloblastoma sample_MDT-MB-894 [SNP]


title: Primary medulloblastoma sample_MDT-MB-919 [SNP]


title: Primary medulloblastoma sample_MDT-MB-906 [SNP]


title: Primary medulloblastoma sample_MDT-MB-898 [SNP]


title: Primary medulloblastoma sample_MDT-MB-897 [SNP]


title: Primary medulloblastoma sample_MDT-MB-893 [SNP]


title: Primary medulloblastoma sample_MDT-MB-899 [SNP]


title: Primary medulloblastoma sample_MDT-MB-891 [SNP]


title: Primary medulloblastoma sample_MDT-MB-887 [SNP]


title: Primary medulloblastoma sample_MDT-MB-886 [SNP]


title: Primary medulloblastoma sample_MDT-MB-888 [SNP]


title: Primary medulloblastoma sample_MDT-MB-885 [SNP]


title: Primary medulloblastoma sample_MDT-MB-902 [SNP]


title: Primary medulloblastoma sample_MDT-MB-892 [SNP]


title: Primary medulloblastoma sample_MDT-MB-881 [SNP]


title: Primary medulloblastoma sample_MDT-MB-877 [SNP]


title: Primary medulloblastoma sample_MDT-MB-883 [SNP]


title: Primary medulloblastoma sample_MDT-MB-884 [SNP]


title: Primary medulloblastoma sample_MDT-MB-875 [SNP]


title: Primary medulloblastoma sample_MDT-MB-882 [SNP]


title: Primary medulloblastoma sample_MDT-MB-900 [SNP]


title: Primary medulloblastoma sample_MDT-MB-874 [SNP]


title: Primary medulloblastoma sample_MDT-MB-873 [SNP]


title: Primary medulloblastoma sample_MDT-MB-864 [SNP]


title: Primary medulloblastoma sample_MDT-MB-868 [SNP]


title: Primary medulloblastoma sample_MDT-MB-867 [SNP]


title: Primary medulloblastoma sample_MDT-MB-872 [SNP]


title: Primary medulloblastoma sample_MDT-MB-869 [SNP]


title: Primary medulloblastoma sample_MDT-MB-862 [SNP]


title: Primary medulloblastoma sample_MDT-MB-860 [SNP]


title: Primary medulloblastoma sample_MDT-MB-861 [SNP]


title: Primary medulloblastoma sample_MDT-MB-865 [SNP]


title: Primary medulloblastoma sample_MDT-MB-859 [SNP]


title: Primary medulloblastoma sample_MDT-MB-863 [SNP]


title: Primary medulloblastoma sample_MDT-MB-854 [SNP]


title: Primary medulloblastoma sample_MDT-MB-855 [SNP]


title: Primary medulloblastoma sample_MDT-MB-871 [SNP]


title: Primary medulloblastoma sample_MDT-MB-856 [SNP]


title: Primary medulloblastoma sample_MDT-MB-852 [SNP]


title: Primary medulloblastoma sample_MDT-MB-844 [SNP]


title: Primary medulloblastoma sample_MDT-MB-853 [SNP]


title: Primary medulloblastoma sample_MDT-MB-840 [SNP]


title: Primary medulloblastoma sample_MDT-MB-833 [SNP]


title: Primary medulloblastoma sample_MDT-MB-843 [SNP]


title: Primary medulloblastoma sample_MDT-MB-834 [SNP]


title: Primary medulloblastoma sample_MDT-MB-841 [SNP]


title: Primary medulloblastoma sample_MDT-MB-842 [SNP]


title: Primary medulloblastoma sample_MDT-MB-837 [SNP]


title: Primary medulloblastoma sample_MDT-MB-831 [SNP]


title: Primary medulloblastoma sample_MDT-MB-832 [SNP]


title: Primary medulloblastoma sample_MDT-MB-829 [SNP]


title: Primary medulloblastoma sample_MDT-MB-835 [SNP]


title: Primary medulloblastoma sample_MDT-MB-828 [SNP]


title: Primary medulloblastoma sample_MDT-MB-826 [SNP]


title: Primary medulloblastoma sample_MDT-MB-825 [SNP]


title: Primary medulloblastoma sample_MDT-MB-830 [SNP]


title: Primary medulloblastoma sample_MDT-MB-827 [SNP]


title: Primary medulloblastoma sample_MDT-MB-836 [SNP]


title: Primary medulloblastoma sample_MDT-MB-822 [SNP]


title: Primary medulloblastoma sample_MDT-MB-845 [SNP]


title: Primary medulloblastoma sample_MDT-MB-838 [SNP]


title: Primary medulloblastoma sample_MDT-MB-823 [SNP]


title: Primary medulloblastoma sample_MDT-MB-820 [SNP]


title: Primary medulloblastoma sample_MDT-MB-824 [SNP]


title: Primary medulloblastoma sample_MDT-MB-821 [SNP]


title: Primary medulloblastoma sample_MDT-MB-819 [SNP]


title: Primary medulloblastoma sample_MDT-MB-839 [SNP]


title: Primary medulloblastoma sample_MDT-MB-818 [SNP]


title: Primary medulloblastoma sample_MDT-MB-816 [SNP]


title: Primary medulloblastoma sample_MDT-MB-815 [SNP]


title: Primary medulloblastoma sample_MDT-MB-817 [SNP]


title: Primary medulloblastoma sample_MDT-MB-814 [SNP]


title: Primary medulloblastoma sample_MDT-MB-812 [SNP]


title: Primary medulloblastoma sample_MDT-MB-811 [SNP]


title: Primary medulloblastoma sample_MDT-MB-810 [SNP]


title: Primary medulloblastoma sample_MDT-MB-808 [SNP]


title: Primary medulloblastoma sample_MDT-MB-802 [SNP]


title: Primary medulloblastoma sample_MDT-MB-796 [SNP]


title: Primary medulloblastoma sample_MDT-MB-795 [SNP]


title: Primary medulloblastoma sample_MDT-MB-806 [SNP]


title: Primary medulloblastoma sample_MDT-MB-803 [SNP]


title: Primary medulloblastoma sample_MDT-MB-813 [SNP]


title: Primary medulloblastoma sample_MDT-MB-801 [SNP]


title: Primary medulloblastoma sample_MDT-MB-799 [SNP]


title: Primary medulloblastoma sample_MDT-MB-791 [SNP]


title: Primary medulloblastoma sample_MDT-MB-807 [SNP]


title: Primary medulloblastoma sample_MDT-MB-792 [SNP]


title: Primary medulloblastoma sample_MDT-MB-804 [SNP]


title: Primary medulloblastoma sample_MDT-MB-794 [SNP]


title: Primary medulloblastoma sample_MDT-MB-798 [SNP]


title: Primary medulloblastoma sample_MDT-MB-790 [SNP]


title: Primary medulloblastoma sample_MDT-MB-786 [SNP]


title: Primary medulloblastoma sample_MDT-MB-793 [SNP]


title: Primary medulloblastoma sample_MDT-MB-784 [SNP]


title: Primary medulloblastoma sample_MDT-MB-787 [SNP]


title: Primary medulloblastoma sample_MDT-MB-809 [SNP]


title: Primary medulloblastoma sample_MDT-MB-783 [SNP]


title: Primary medulloblastoma sample_MDT-MB-780 [SNP]


title: Primary medulloblastoma sample_MDT-MB-778 [SNP]


title: Primary medulloblastoma sample_MDT-MB-788 [SNP]


title: Primary medulloblastoma sample_MDT-MB-779 [SNP]


title: Primary medulloblastoma sample_MDT-MB-785 [SNP]


title: Primary medulloblastoma sample_MDT-MB-772 [SNP]


title: Primary medulloblastoma sample_MDT-MB-766 [SNP]


title: Primary medulloblastoma sample_MDT-MB-776 [SNP]


title: Primary medulloblastoma sample_MDT-MB-770 [SNP]


title: Primary medulloblastoma sample_MDT-MB-789 [SNP]


title: Primary medulloblastoma sample_MDT-MB-762 [SNP]


title: Primary medulloblastoma sample_MDT-MB-761 [SNP]


title: Primary medulloblastoma sample_MDT-MB-764 [SNP]


title: Primary medulloblastoma sample_MDT-MB-769 [SNP]


title: Primary medulloblastoma sample_MDT-MB-775 [SNP]


title: Primary medulloblastoma sample_MDT-MB-781 [SNP]


title: Primary medulloblastoma sample_MDT-MB-758 [SNP]


title: Primary medulloblastoma sample_MDT-MB-756 [SNP]


title: Primary medulloblastoma sample_MDT-MB-763 [SNP]


title: Primary medulloblastoma sample_MDT-MB-767 [SNP]


title: Primary medulloblastoma sample_MDT-MB-757 [SNP]


title: Primary medulloblastoma sample_MDT-MB-759 [SNP]


title: Primary medulloblastoma sample_MDT-MB-755 [SNP]


title: Primary medulloblastoma sample_MDT-MB-749 [SNP]


title: Primary medulloblastoma sample_MDT-MB-747 [SNP]


title: Primary medulloblastoma sample_MDT-MB-746 [SNP]


title: Primary medulloblastoma sample_MDT-MB-739 [SNP]


title: Primary medulloblastoma sample_MDT-MB-742 [SNP]


title: Primary medulloblastoma sample_MDT-MB-734 [SNP]


title: Primary medulloblastoma sample_MDT-MB-754 [SNP]


title: Primary medulloblastoma sample_MDT-MB-735 [SNP]


title: Primary medulloblastoma sample_MDT-MB-736 [SNP]


title: Primary medulloblastoma sample_MDT-MB-751 [SNP]


title: Primary medulloblastoma sample_MDT-MB-753 [SNP]


title: Primary medulloblastoma sample_MDT-MB-765 [SNP]


title: Primary medulloblastoma sample_MDT-MB-730 [SNP]


title: Primary medulloblastoma sample_MDT-MB-731 [SNP]


title: Primary medulloblastoma sample_MDT-MB-732 [SNP]


title: Primary medulloblastoma sample_MDT-MB-733 [SNP]


title: Primary medulloblastoma sample_MDT-MB-719 [SNP]


title: Primary medulloblastoma sample_MDT-MB-728 [SNP]


title: Primary medulloblastoma sample_MDT-MB-760 [SNP]


title: Primary medulloblastoma sample_MDT-MB-729 [SNP]


title: Primary medulloblastoma sample_MDT-MB-752 [SNP]


title: Primary medulloblastoma sample_MDT-MB-723 [SNP]


title: Primary medulloblastoma sample_MDT-MB-725 [SNP]


title: Primary medulloblastoma sample_MDT-MB-713 [SNP]


title: Primary medulloblastoma sample_MDT-MB-714 [SNP]


title: Primary medulloblastoma sample_MDT-MB-738 [SNP]


title: Primary medulloblastoma sample_MDT-MB-750 [SNP]


title: Primary medulloblastoma sample_MDT-MB-712 [SNP]


title: Primary medulloblastoma sample_MDT-MB-715 [SNP]


title: Primary medulloblastoma sample_MDT-MB-710 [SNP]


title: Primary medulloblastoma sample_MDT-MB-711 [SNP]


title: Primary medulloblastoma sample_MDT-MB-717 [SNP]


title: Primary medulloblastoma sample_MDT-MB-708 [SNP]


title: Primary medulloblastoma sample_MDT-MB-709 [SNP]


title: Primary medulloblastoma sample_MDT-MB-698 [SNP]


title: Primary medulloblastoma sample_MDT-MB-696 [SNP]


title: Primary medulloblastoma sample_MDT-MB-704 [SNP]


title: Primary medulloblastoma sample_MDT-MB-699 [SNP]


title: Primary medulloblastoma sample_MDT-MB-692 [SNP]


title: Primary medulloblastoma sample_MDT-MB-693 [SNP]


title: Primary medulloblastoma sample_MDT-MB-691 [SNP]


title: Primary medulloblastoma sample_MDT-MB-701 [SNP]


title: Primary medulloblastoma sample_MDT-MB-690 [SNP]


title: Primary medulloblastoma sample_MDT-MB-705 [SNP]


title: Primary medulloblastoma sample_MDT-MB-685 [SNP]


title: Primary medulloblastoma sample_MDT-MB-706 [SNP]


title: Primary medulloblastoma sample_MDT-MB-687 [SNP]


title: Primary medulloblastoma sample_MDT-MB-686 [SNP]


title: Primary medulloblastoma sample_MDT-MB-695 [SNP]


title: Primary medulloblastoma sample_MDT-MB-707 [SNP]


title: Primary medulloblastoma sample_MDT-MB-669 [SNP]


title: Primary medulloblastoma sample_MDT-MB-675 [SNP]


title: Primary medulloblastoma sample_MDT-MB-681 [SNP]


title: Primary medulloblastoma sample_MDT-MB-665 [SNP]


title: Primary medulloblastoma sample_MDT-MB-664 [SNP]


title: Primary medulloblastoma sample_MDT-MB-688 [SNP]


title: Primary medulloblastoma sample_MDT-MB-684 [SNP]


title: Primary medulloblastoma sample_MDT-MB-680 [SNP]


title: Primary medulloblastoma sample_MDT-MB-667 [SNP]


title: Primary medulloblastoma sample_MDT-MB-683 [SNP]


title: Primary medulloblastoma sample_MDT-MB-679 [SNP]


title: Primary medulloblastoma sample_MDT-MB-661 [SNP]


title: Primary medulloblastoma sample_MDT-MB-660 [SNP]


title: Primary medulloblastoma sample_MDT-MB-662 [SNP]


title: Primary medulloblastoma sample_MDT-MB-655 [SNP]


title: Primary medulloblastoma sample_MDT-MB-689 [SNP]


title: Primary medulloblastoma sample_MDT-MB-659 [SNP]


title: Primary medulloblastoma sample_MDT-MB-654 [SNP]


title: Primary medulloblastoma sample_MDT-MB-649 [SNP]


title: Primary medulloblastoma sample_MDT-MB-658 [SNP]


title: Primary medulloblastoma sample_MDT-MB-656 [SNP]


title: Primary medulloblastoma sample_MDT-MB-648 [SNP]


title: Primary medulloblastoma sample_MDT-MB-657 [SNP]


title: Primary medulloblastoma sample_MDT-MB-652 [SNP]


title: Primary medulloblastoma sample_MDT-MB-650 [SNP]


title: Primary medulloblastoma sample_MDT-MB-663 [SNP]


title: Primary medulloblastoma sample_MDT-MB-643 [SNP]


title: Primary medulloblastoma sample_MDT-MB-637 [SNP]


title: Primary medulloblastoma sample_MDT-MB-641 [SNP]


title: Primary medulloblastoma sample_MDT-MB-646 [SNP]


title: Primary medulloblastoma sample_MDT-MB-635 [SNP]


title: Primary medulloblastoma sample_MDT-MB-631 [SNP]


title: Primary medulloblastoma sample_MDT-MB-640 [SNP]


title: Primary medulloblastoma sample_MDT-MB-670 [SNP]


title: Primary medulloblastoma sample_MDT-MB-639 [SNP]


title: Primary medulloblastoma sample_MDT-MB-632 [SNP]


title: Primary medulloblastoma sample_MDT-MB-638 [SNP]


title: Primary medulloblastoma sample_MDT-MB-644 [SNP]


title: Primary medulloblastoma sample_MDT-MB-633 [SNP]


title: Primary medulloblastoma sample_MDT-MB-628 [SNP]


title: Primary medulloblastoma sample_MDT-MB-642 [SNP]


title: Primary medulloblastoma sample_MDT-MB-634 [SNP]


title: Primary medulloblastoma sample_MDT-MB-636 [SNP]


title: Primary medulloblastoma sample_MDT-MB-621 [SNP]


title: Primary medulloblastoma sample_MDT-MB-630 [SNP]


title: Primary medulloblastoma sample_MDT-MB-622 [SNP]


title: Primary medulloblastoma sample_MDT-MB-623 [SNP]


title: Primary medulloblastoma sample_MDT-MB-629 [SNP]


title: Primary medulloblastoma sample_MDT-MB-627 [SNP]


title: Primary medulloblastoma sample_MDT-MB-617 [SNP]


title: Primary medulloblastoma sample_MDT-MB-626 [SNP]


title: Primary medulloblastoma sample_MDT-MB-616 [SNP]


title: Primary medulloblastoma sample_MDT-MB-614 [SNP]


title: Primary medulloblastoma sample_MDT-MB-615 [SNP]


title: Primary medulloblastoma sample_MDT-MB-613 [SNP]


title: Primary medulloblastoma sample_MDT-MB-612 [SNP]


title: Primary medulloblastoma sample_MDT-MB-609 [SNP]


title: Primary medulloblastoma sample_MDT-MB-611 [SNP]


title: Primary medulloblastoma sample_MDT-MB-651 [SNP]


title: Primary medulloblastoma sample_MDT-MB-608 [SNP]


title: Primary medulloblastoma sample_MDT-MB-605 [SNP]


title: Primary medulloblastoma sample_MDT-MB-620 [SNP]


title: Primary medulloblastoma sample_MDT-MB-603 [SNP]


title: Primary medulloblastoma sample_MDT-MB-610 [SNP]


title: Primary medulloblastoma sample_MDT-MB-647 [SNP]


title: Primary medulloblastoma sample_MDT-MB-607 [SNP]


title: Primary medulloblastoma sample_MDT-MB-596 [SNP]


title: Primary medulloblastoma sample_MDT-MB-602 [SNP]


title: Primary medulloblastoma sample_MDT-MB-595 [SNP]


title: Primary medulloblastoma sample_MDT-MB-593 [SNP]


title: Primary medulloblastoma sample_MDT-MB-597 [SNP]


title: Primary medulloblastoma sample_MDT-MB-582 [SNP]


title: Primary medulloblastoma sample_MDT-MB-584 [SNP]


title: Primary medulloblastoma sample_MDT-MB-591 [SNP]


title: Primary medulloblastoma sample_MDT-MB-590 [SNP]


title: Primary medulloblastoma sample_MDT-MB-583 [SNP]


title: Primary medulloblastoma sample_MDT-MB-585 [SNP]


title: Primary medulloblastoma sample_MDT-MB-601 [SNP]


title: Primary medulloblastoma sample_MDT-MB-592 [SNP]


title: Primary medulloblastoma sample_MDT-MB-600 [SNP]


title: Primary medulloblastoma sample_MDT-MB-581 [SNP]


title: Primary medulloblastoma sample_MDT-MB-578 [SNP]


title: Primary medulloblastoma sample_MDT-MB-574 [SNP]


title: Primary medulloblastoma sample_MDT-MB-572 [SNP]


title: Primary medulloblastoma sample_MDT-MB-577 [SNP]


title: Primary medulloblastoma sample_MDT-MB-576 [SNP]


title: Primary medulloblastoma sample_MDT-MB-580 [SNP]


title: Primary medulloblastoma sample_MDT-MB-567 [SNP]


title: Primary medulloblastoma sample_MDT-MB-569 [SNP]


title: Primary medulloblastoma sample_MDT-MB-571 [SNP]


title: Primary medulloblastoma sample_MDT-MB-566 [SNP]


title: Primary medulloblastoma sample_MDT-MB-575 [SNP]


title: Primary medulloblastoma sample_MDT-MB-568 [SNP]


title: Primary medulloblastoma sample_MDT-MB-573 [SNP]


title: Primary medulloblastoma sample_MDT-MB-618 [SNP]


title: Primary medulloblastoma sample_MDT-MB-561 [SNP]


title: Primary medulloblastoma sample_MDT-MB-606 [SNP]


title: Primary medulloblastoma sample_MDT-MB-604 [SNP]


title: Primary medulloblastoma sample_MDT-MB-564 [SNP]


title: Primary medulloblastoma sample_MDT-MB-570 [SNP]


title: Primary medulloblastoma sample_MDT-MB-599 [SNP]


title: Primary medulloblastoma sample_MDT-MB-559 [SNP]


title: Primary medulloblastoma sample_MDT-MB-558 [SNP]


title: Primary medulloblastoma sample_MDT-MB-554 [SNP]


title: Primary medulloblastoma sample_MDT-MB-586 [SNP]


title: Primary medulloblastoma sample_MDT-MB-551 [SNP]


title: Primary medulloblastoma sample_MDT-MB-562 [SNP]


title: Primary medulloblastoma sample_MDT-MB-553 [SNP]


title: Primary medulloblastoma sample_MDT-MB-563 [SNP]


title: Primary medulloblastoma sample_MDT-MB-557 [SNP]


title: Primary medulloblastoma sample_MDT-MB-547 [SNP]


title: Primary medulloblastoma sample_MDT-MB-552 [SNP]


title: Primary medulloblastoma sample_MDT-MB-565 [SNP]


title: Primary medulloblastoma sample_MDT-MB-550 [SNP]


title: Primary medulloblastoma sample_MDT-MB-548 [SNP]


title: Primary medulloblastoma sample_MDT-MB-549 [SNP]


title: Primary medulloblastoma sample_MDT-MB-544 [SNP]


title: Primary medulloblastoma sample_MDT-MB-542 [SNP]


title: Primary medulloblastoma sample_MDT-MB-546 [SNP]


title: Primary medulloblastoma sample_MDT-MB-541 [SNP]


title: Primary medulloblastoma sample_MDT-MB-539 [SNP]


title: Primary medulloblastoma sample_MDT-MB-545 [SNP]


title: Primary medulloblastoma sample_MDT-MB-540 [SNP]


title: Primary medulloblastoma sample_MDT-MB-538 [SNP]


title: Primary medulloblastoma sample_MDT-MB-537 [SNP]


title: Primary medulloblastoma sample_MDT-MB-543 [SNP]


title: Primary medulloblastoma sample_MDT-MB-533 [SNP]


title: Primary medulloblastoma sample_MDT-MB-535 [SNP]


title: Primary medulloblastoma sample_MDT-MB-531 [SNP]


title: Primary medulloblastoma sample_MDT-MB-532 [SNP]


title: Primary medulloblastoma sample_MDT-MB-556 [SNP]


title: Primary medulloblastoma sample_MDT-MB-555 [SNP]


title: Primary medulloblastoma sample_MDT-MB-530 [SNP]


title: Primary medulloblastoma sample_MDT-MB-526 [SNP]


title: Primary medulloblastoma sample_MDT-MB-527 [SNP]


title: Primary medulloblastoma sample_MDT-MB-520 [SNP]


title: Primary medulloblastoma sample_MDT-MB-519 [SNP]


title: Primary medulloblastoma sample_MDT-MB-518 [SNP]