title: Sample#G71Tumor DNA SNP_6.0


title: gastrula 12 degreesBlock_3_BC2_12

status: Public on Nov 30 2012

type: RNA

city: Durham

first: Daniel

last: Runcie

state: NC

department: Biology Department

country: USA

institute: Duke University

description: Used

hyb_protocol: Standard Illumina DASL hybridization protocol

scan_protocol: Standard Illumina DASL scanning protocol

data_processing:
Raw, pre-BeadStudio files were processed using tools in the beadarray package in R. Details are in the accompanying manuscript. Briefly, probe measurements from the Cy3 channel were averaged, and then log-transformed. Each probe was first corrected for background effects by regression against data from negative control probes. Then all samples were normalized to the average expression of probes targeting the gene RBM8A.
Normalized intensities for each probe included in the final analysis. Several probes were excluded because they appeared to target other transcripts.

molecule: total RNA

organism: Strongylocentrotus purpuratus

source_name: gastrula 12 degrees

label_protocol: Standard Illumina DASL label protocol

growth_protocol: Sea urchins spawned, fertilized, washed and cultured in artificial sea water (CoralLife) until the mid-gastrula stage

extract_protocol: Embryos were concentrated and disrupted in Qiagen RLT buffer with 1% BME, and then extracted with the RNeasy kit. All RNA concentrations were above 10ng/ul. RNA concentrations above 200 ng/ul were diluted to this value.

treatment_protocol: Cultures were grown in a growth chamber at 12C, 15C or 18C

tag: deveopmental stage

value: gastrula stage embryo

tag: female

tag: male

tag: replicate

tag: block

tag: temperature ©

tag: sampling,time

tag: dasl,plate

tag: dasl,plate,row

value: C

tag: dasl,plate,column

tag: culture,stage,mean

tag: culture,stage,sd


title: 77111_megagametophyte#69_635

city: Quebec

first: Jukka-Pekka

last: Verta

state: QC

address: 1030 Avenue de la Medecine, Pavillon Charles-Eugene-Marchand, bureau 2225

department: Department of Wood and Forest Sciences

country: Canada

institute: Centre for Forest Research

description: FLAG column defines whether spot had normal (1) or abnormal (0) morphology.

hyb_protocol: Each microarray was hybridized with two random samples labelled with different dyes. The samples to be hybridized to a microarray were mixed and the volume was reduced to ~10 µl by evaporating excess water in a DNA 120 speedvac (Thermo Fisher Scientific). Labelled aRNAs were fragmented for 15 minutes at 70°C using Ambion’s ”RNA Fragmentation Reagents“, placed on ice for 1 minute, denatured for 2 minutes at 95°C, put on ice for 2 min and resuspended in 120 µl hybridization buffer (50% formamide, 5X SSC, 0,1% SDS, 0,1 mg/mL Herring sperm DNA) preheated to 55°C. Samples were kept in a heating block at 50°C until hybridization. Hybridizations were performed in HS400Pro hybridization stations (Tecan Group Ltd., Männedorf, Switzerland). The slides were heated at 80°C for 10 minutes, then washed once at 37°C with 0.5X SSC, 0.1% SDS for 20 seconds and once at 50°C with 2X SSC, 0.5% SDS for 20 seconds, and prehybridized for 1 hour at 65°C in 5X SSC, 0.1% SDS, 0.1 mg/ml BSA, 0.1 mg/ml Herring Sperm DNA. Next the slides were washed at 55°C with 2X SSC, 0.5% SDS for 1 minute with a 30 seconds soak and washed again at 45°C for 1 minute with the same solution. The resuspended labelled targets were injected into the chambers and hybridized for 16 hours at 45°C with sample agitation. The slides were then washed as follows: 2 times 1 minute 30 seconds at 45°C with 30 seconds soaking in 2X SSC, 0.5% SDS, 1 time 1 minute at 45° in 2X SSC, 0.5% SDS, 2 times 1 minute 30 seconds at 45°C with 30 seconds soaking in 0.5X SSC, 0.1% SDS, 1 time 1 minute at 37°C with 20 seconds soaking in 0.5X SSC, 0.1% SDS, 1 time 1 minute at 23°C with 20 seconds soaking in 0.5X SSC, 0.1% SDS, 1 time 1 minute 30 seconds at 23°C with 30 seconds soaking in 0.1X SSC, 1 time 30 seconds at 23°C in 0.1X SSC and 2 times 30 seconds at 23°C in milliQ filtered water. Finally slides were dried for 2 minutes 30 seconds with nitrogen gaz.

scan_protocol: Slide scanning was performed with the PowerScanner (Tecan) microarray scanner at 5 micron resolution and image analysis was carried out using ArrayPro Analyzer v. 6.3 (Media Cybernetics, Bethesda, MD, USA).

data_processing: The data analyses were carried out on data (trimmed spot intensity means) from the two channels separately. An RGList object was built for each replicate sample set (i.e. analysis channel) with Limma (G. K. Smyth, Bioinformatics and Computational Biology Solutions using R and Bioconductor, Springer [New York] [2005]) in the R statistical environment (R. Ihaka & R. Gentleman, J Comp Graph Stat 5, 299 [1996]). These single color microarray fluorescence data were then background-corrected and normalized using the normexp and quantile -methods.

molecule: polyA RNA

organism: Picea glauca

source_name: Megagametophyte

label_protocol: The mRNA (9 ng) was transcribed in-vitro by using the Amino Allyl MessageAmp II aRNA Amplification kit (Ambion by Life Technologies, Austin, TX, USA), following the manufacturer’s instructions. The aaRNA (5 ug per sample) was labeled using Alexa Fluor 555 and 647 dyes (Invitrogen, Carlsbad, CA, USA), one for each replicated sample set, and purified as per the manufacturer’s instructions. Dye incorporation efficiency was determined by using a Nanodrop spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA) following the manufacturer’s instructions.

growth_protocol: The seed materials were obtained from Canadian Forest Service (CFS) seed bank in Quebec City, Canada (Dr J. Beaulieu). These seed lots were from a single tree and each seed lot was collected in a single year. The mother trees used in this study (77111 and 80112) correspond to trees studied by Pelgas et al. (BMC Genomics 12, 145 [2011]). Before stratification, the seeds were surface sterilized with 70% EtOH (1 min) and 3% Na-hypochlorite (10 min), rinsing the seeds three times with sterilized water between and after treatments. The seeds were stratified by immersing them in cold (4° Celsius) sterile water for 24 hours, followed by storage in 4° Celsius for 28 days. The germination process was then started by incubating the stratified seeds in 26° Celsius in the dark for four hours.

extract_protocol: The megagametophytes were dissected from the rest of the seeds under a dissecting microscope, separated in two halves of equal size, flash frozen on liquid nitrogen and store at -80 Celsius until used for RNA extraction. Megametophyte tissues were ground using a pestle in liquid nitrogen and mRNA was isolated using the Dynabeads mRNA Mikro kit (Dynal/Invitrogen, Oslo, Norway) following manufacturers instructions.The mRNA quality and concentration were determined with mRNA Pico assays (Agilent Technologies Inc., Santa Clara, CA, USA) on Agilent BioAnalyzer.

tag: tissue

value: Megagametophyte

tag: tree number


title: Sample#G80Blood DNA SNP_6.0

type: genomic

city: Salamanca

first: MariaDolores

last: Tabernero

address: Paseo San Vicente 58-182

country: Spain

institute: Hospital Universitario de Salamanca y Centro del Cáncer

description: Hybridize to Genome-Wide Human SNP 6.0 Array

hyb_protocol: DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.

scan_protocol: The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.

data_processing:
The array images were acquired using GeneChip® Operating Software (GCOS) and Affymetrix GeneChip®Command Console Software (AGCC). Copy number values for individual SNPs were extracted and converted from CEL files into signal intensities using Genotyping Console version  4.1.1.834 (chp files). Genomic analysis was performed by using the DNA chip Analyze (dChip) and CNAG 3.3.0.1 software.
primary data description: Genotype Call (SNP call): AA, AB, BB, NC, and NoCall; 'Signal' = Summarized signal

label: Biotin

molecule: genomic DNA

organism: Homo sapiens

source_name: Peripheral blood

label_protocol: As per manufacturer (Affymetrix)

extract_protocol: Genomic DNA was extracted from GBM  tissues and  from peripheral blood at diagnosis using the Qiagen DNA Mini Kit. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer  and agarose gel electrophoresis.

value: Pheripheral blood

tag: age

tag: gender

value: Male

tag: grade

value: not applicable

tag: karnofsky index(%)

tag: tumor localization

tag: number of relapses

tag: survival after surgery


title: Patient_16

city: Bad Krozingen

first: Thomas

middle: G

last: Nuehrenberg

state: Baden-Württemberg

address: Südring 15

department: Klinik für Kardiologie II

country: Germany

institute: Universitäts-Herzzentrum Freiburg • Bad Krozingen

description: Gene expression in peripheral blood, conservation of RNA with PAXGENE system

hyb_protocol: Hybridization was performed with 1.65 µg of labeled cDNA per array at a temperature of 65°C overnight.

scan_protocol: An Agilent G2565CA DNA microarray scanner was used to scan the arrays at a resolution of 5 µm. The Feature Extraction Software 9.5.3.1 was then used to process and analyze array images. The software returns a series of spot quality measures to evaluate the quality and reliability of spot intensity estimates.

data_processing: The raw data were analyzed using GeneSpring GX 10.0 (normalization: shift to 75.0 percentile, baseline transformation: median of all samples). The normalized data were filtered to exclude probes flagged absent in all samples. The remaining probes were tested for statistical significance of expression using a two sample t-test (unpaired) with an asymptotic p-value computation and a p-value cut-off of 0.05. Multiple testing correction was performed by controlling the false discovery rate (FDR) according to Benjamini-Hochberg with a FDR cut-off of 0.05. The cut off for the fold change (FC) was FC=2 (1 log2) up- or down-regulation.

source_name: Peripheral Blood, Patient 16

label_protocol: Sample labeling and hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol. Briefly, for the hybridization of the microarrays, 0.5 µg of total RNA was reverse transcribed into cDNA and labeled with Cy3 using the one-color Quick Amp Labeling Kit (Agilent).

extract_protocol: At the time of sampling, blood was collected for routine clinical laboratory values as well as in PAXGENE tubes (Preanalytix) for RNA preservation. RNA was isolated by the use of the Quiagen RNeasy mini kit as directed by the manufacturer including DNase treatment. Before gene expression analysis, RNA concentration was determined using a UV-Vis spectrophotometer NanoDrop® ND-1000 (NanoDrop Technologies, Wilmington, USA). RNA integrity and quality was then estimated on Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA) and RNA integrity number (RIN) index was calculated for each sample using the Agilent 2100 Expert software. RIN provides a numerical assessment of the integrity of RNA that facilitates the standardization of the quality interpretation; for microarray processing, only RNAs with RIN number >8.0 were further processed to reduce experimental biases due to poor RNA quality.

value: whole blood

tag: group

value: Progression


title: gastrula 12 degreesBlock_3_DD2_12

description: Used

tag: deveopmental stage

tag: female

tag: male

tag: replicate

tag: block

tag: temperature ©


title: Patient_17

source_name: Peripheral Blood, Patient 17

value: Stable


title: 77111_megagametophyte#54_532


title: 77111_megagametophyte#71_532


title: 77111_megagametophyte#60_532


title: gastrula 12 degreesBlock_3_CC2_12

description: Used

tag: sampling,time

tag: dasl,plate

tag: dasl,plate,row

tag: dasl,plate,column

tag: culture,stage,mean

tag: culture,stage,sd


title: Sample#G79Blood DNA SNP_6.0

tag: tissue

tag: age

tag: gender

value: Female

tag: grade

tag: karnofsky index(%)


title: gastrula 12 degreesBlock_3_AC1_12

description: Used

tag: deveopmental stage


title: Sample#G70Blood DNA SNP_6.0

tag: tumor localization

tag: number of relapses

tag: survival after surgery


title: Patient_14

source_name: Peripheral Blood, Patient 14

tag: group


title: 77111_megagametophyte#68_635

tag: tree number


title: 77111_megagametophyte#72_635


title: Sample#G71Blood DNA SNP_6.0


title: gastrula 12 degreesBlock_3_AD2_12

description: Used

tag: female

tag: male

tag: replicate

tag: block

tag: temperature ©

tag: sampling,time

value: B


title: Sample#G72Blood DNA SNP_6.0

tag: tissue


title: Patient_12

source_name: Peripheral Blood, Patient 12


title: 77111_megagametophyte#71_635


title: gastrula 12 degreesBlock_3_AD1_12

description: Used

tag: dasl,plate

tag: dasl,plate,row

tag: dasl,plate,column

tag: culture,stage,mean

tag: culture,stage,sd


title: 77111_megagametophyte#65_635


title: 77111_megagametophyte#55_635


title: Patient_11

source_name: Peripheral Blood, Patient 11


title: Sample#G67Blood DNA SNP_6.0

tag: age

tag: gender

tag: grade

tag: karnofsky index(%)

tag: tumor localization


title: Patient_15

source_name: Peripheral Blood, Patient 15

tag: group


title: 77111_megagametophyte#46_635

tag: tree number


title: Patient_13

source_name: Peripheral Blood, Patient 13


title: gastrula 12 degreesBlock_3_DB1_12

description: Used

tag: deveopmental stage

tag: female

tag: male

tag: replicate


title: gastrula 12 degreesBlock_3_AB2_12

description: Used

tag: block

tag: temperature ©

tag: sampling,time


title: gastrula 12 degreesBlock_3_CA1_12

description: Used

tag: dasl,plate

tag: dasl,plate,row

tag: dasl,plate,column


title: Sample#G66Blood DNA SNP_6.0

tag: tissue

tag: age

tag: number of relapses

tag: survival after surgery


title: Sample#G66Tumor DNA SNP_6.0

source_name: GBM tumor

value: Glioblastoma tissue

tag: gender

tag: grade

value: IV

tag: karnofsky index(%)

tag: tumor localization

value: Occipital


title: 77111_megagametophyte#57_635

tag: tree number


title: Patient_9

source_name: Peripheral Blood, Patient 9

tag: group


title: Patient_10

source_name: Peripheral Blood, Patient 10


title: Sample#G68Tumor DNA SNP_6.0

value: Insular


title: Sample#G67Tumor DNA SNP_6.0

value: Parietal


title: Sample#G68Blood DNA SNP_6.0


title: Sample#G65Tumor DNA SNP_6.0


title: Patient_8

source_name: Peripheral Blood, Patient 8


title: gastrula 12 degreesBlock_3_BA2_12

description: Used

tag: deveopmental stage

tag: female

tag: male

tag: replicate

tag: culture,stage,mean

tag: culture,stage,sd


title: gastrula 12 degreesBlock_3_BD1_12

description: Used

tag: block

tag: temperature ©

tag: sampling,time

tag: dasl,plate

tag: dasl,plate,row

tag: dasl,plate,column


title: gastrula 12 degreesBlock_3_CB2_12

description: Used


title: Patient_6

source_name: Peripheral Blood, Patient 6

tag: tissue


title: gastrula 12 degreesBlock_3_CD1_12

description: Used


title: 77111_megagametophyte#58_635


title: 77111_megagametophyte#47_635


title: 77111_megagametophyte#60_635


title: Patient_5

source_name: Peripheral Blood, Patient 5


title: Patient_7

source_name: Peripheral Blood, Patient 7


title: 77111_megagametophyte#61_635


title: Sample#G65Blood DNA SNP_6.0

tag: age

tag: gender

tag: grade

tag: karnofsky index(%)

tag: number of relapses

tag: survival after surgery


title: gastrula 12 degreesBlock_3_AB1_12

description: Used

source_name: gastrula 12 degrees

tag: deveopmental stage

tag: female

tag: male


title: Patient_4

source_name: Peripheral Blood, Patient 4

tag: group


title: Sample#G37RBlood DNA SNP_6.0

source_name: Peripheral blood

tag: tumor localization


title: gastrula 12 degreesBlock_3_BB2_12

description: Used

tag: replicate

tag: block

tag: temperature ©

tag: culture,stage,mean

tag: culture,stage,sd


title: Sample#G55RBlood DNA SNP_6.0

tag: tissue


title: Sample#G70Tumor DNA SNP_6.0

tag: age


title: 77111_megagametophyte#54_635

source_name: Megagametophyte

tag: tree number


title: gastrula 12 degreesBlock_3_DB2_12

description: Used

tag: sampling,time

tag: dasl,plate

tag: dasl,plate,row

tag: dasl,plate,column


title: 77111_megagametophyte#53_635


title: 77111_megagametophyte#41_635


title: Sample#G55RTumor DNA SNP_6.0

value: Relapsed Glioblastoma tissue

tag: gender

tag: grade

tag: karnofsky index(%)

value: Frontal

tag: number of relapses

tag: survival after surgery


title: Patient_1

source_name: Peripheral Blood, Patient 1

tag: group


title: gastrula 12 degreesBlock_3_BD2_12

description: Used

tag: deveopmental stage

value: gastrula stage embryo

tag: female

tag: male

tag: replicate

tag: block

value: A


title: Patient_3

source_name: Peripheral Blood, Patient 3

tag: tissue


title: gastrula 12 degreesBlock_3_DA1_12

description: Used

tag: temperature ©

tag: culture,stage,mean

tag: culture,stage,sd


title: 77111_megagametophyte#51_635

value: Megagametophyte

tag: tree number


title: Sample#14 Blood DNA GenomeWideSNP_6.0

data_processing:
The array images were acquired using Affymetrix GeneChip®  Operating Software (GCOS) and Command Console Software (AGCC). Copy number values for individual SNPs were extracted and converted from CEL files into signal intensities using Genotyping Console version  4.1.1.834. Genomic analysis was performed by using the DNA chip Analyze (dChip) and CNAG 3.3.0.1 softwares.
primary data description: Genotype Call (SNP call): AA, AB, BB, NC, and NoCall; 'Signal' = Summarized signal

extract_protocol: Genomic DNA was extracted from meningiomas  tissues and  from peripheral blood at diagnosis using the Qiagen DNA Blood Mini Kit. DNA quality and quantity was assessed using a Nanodrop Spectrophotometer  and agarose gel electrophoresis.

tag: tumor

value: Pheripheral blood

tag: age

value: Male

tag: who grade

value: Not applicable


title: 77111_megagametophyte#56_635


title: Patient_2

source_name: Peripheral Blood, Patient 2

value: whole blood


title: Seedlings triple SnRK2 mutant 10 uM ABA 3 hours rep2 vs Seedlings reference Col-0 sample 10 uM ABA 3 hours

city: Valencia

first: Francisco

last: Vera-Sirera

address: Ingeniero Fausto Elio, s/n

institute: IBMCP (UPV-CSIC)

description: Triple SnRK2 mutant labelled with Cy5 compared with Col-0 reference sample labelled with Cy3

hyb_protocol: Hybridization and slide washing were carried out with the Gene Expression Hybridization Kit and Gene Expression Wash Buffers, respectively

scan_protocol: Scanned on Agilent Technologies Scanner G2505B at a resolution of 5 microns per pixel,using the double scanning as Agilent’s recommended settings. Images were quantified using Agilent Feature Extraction Software (version 9.5.1)

data_processing: Inter-array analyses were performed with the GeneSpring 11.5 software. Dye-swap was undo to made all ratio as Col-0 reference data/Mutant data. To ensure high quality dataset, control features were removed, and only features for which the ‘IsWellAboveBG’ parameter was 1 at least in three out of four replicas were selected (31,912 and 31908 features, for pyr1pyl1pyl2pyl4pyl5pyl8 sextuple mutant and snrk2.2/2.3/2.6 triple mutant analysis, respectively.

organism: Arabidopsis thaliana

source_name: 15 days seedlings Triple SnRK2 mutant rep2 treated with 10 uM ABA during 3 hours

label_protocol: 0.5 ug of total RNA 0.5 were amplified and labeled with the Agilent Low Input Quick Amp Labeling Kit. Agilent’s Spike-In Kit was used to assess the labeling and hybridization efficiencies

growth_protocol: seeds were surface sterilized by treatment with 70% ethanol for 20 min, followed by commercial bleach (2.5 % sodium hypochlorite) containing 0.05 % Triton X-100 for 10 min, and finally, four washes with sterile distilled water. Stratification of the seeds was conducted in the dark at 4ºC for 3 days. Then, seeds were sowed on plates with Murashige-Skoog (MS) solid medium for 4 days. Then they were transfered to sterile flask with MS liquid medium and grown under 100 rpm agitation for 11 days. Plates and flasks were incubated in a controlled environment growth chamber at 22ºC under a 16 h light, 8 h dark photoperiod at 80-100 uE m-2 sec-1.

extract_protocol: Seedlings were frozen in liquid nitrogen, and grounded in mortars dipped in liquid nitrogen. Total RNA was extracted using the Quiagen Plant RNeasy Mini Kit followong the manufacturer´s recommendations

treatment_protocol: 3 hours before harvest samples, all the seedlings were treated with ABA, with final concectration of 10 uM

tag: material

value: 15 days seedlings

tag: genotype

value: snrk2.2/2.3/2.6 triple mutant

tag: treatment

value: 10 uM ABA during 3 hours

tag: genetic background

value: seedling

source_name: 15 days seedlings Col-0 Reference sample treated with 10 uM ABA during 3 hours

value: wild type Col-0 reference sample


title: Seedlings triple SnRK2 mutant 10 uM ABA 3 hours rep4 vs Seedlings reference Col-0 sample 10 uM ABA 3 hours

description: Triple SnRK2 mutant labelled with Cy3 compared with Col-0 reference sample labelled with Cy5

source_name: 15 days seedlings Triple SnRK2 mutant rep4 treated with 10 uM ABA during 3 hours


title: Sample#14 Tumor DNA GenomeWideSNP_6.0

source_name: Meningioma tumor

value: Meningioma tumor

tag: gender

value: I


title: 77111_megagametophyte#67_635


title: gastrula 12 degreesBlock_3_CD2_12

description: Used

tag: deveopmental stage

tag: female

tag: sampling,time

tag: dasl,plate

tag: dasl,plate,row

tag: dasl,plate,column


title: Seedlings triple SnRK2 mutant 10 uM ABA 3 hours rep1 vs Seedlings reference Col-0 sample 10 uM ABA 3 hours

source_name: 15 days seedlings Triple SnRK2 mutant rep1 treated with 10 uM ABA during 3 hours

tag: tissue


title: Seedlings triple SnRK2 mutant 10 uM ABA 3 hours rep3 vs Seedlings reference Col-0 sample 10 uM ABA 3 hours

source_name: 15 days seedlings Triple SnRK2 mutant rep3 treated with 10 uM ABA during 3 hours


title: Seedlings sextuple PYR/PYL mutant 10 uM ABA 3 hours rep4 vs Seedlings reference Col-0 sample 10 uM ABA 3 hours

description: Sextuple PYR/PYL mutant labelled with Cy3 compared with Col-0 reference sample labelled with Cy5

source_name: 15 days seedlings Sextuple PYR/PYL mutant rep4 treated with 10 uM ABA during 3 hours


title: gastrula 12 degreesBlock_3_CA2_12

description: Used

tag: male

tag: replicate

tag: block

tag: temperature ©

tag: culture,stage,mean

tag: culture,stage,sd


title: Sample#9 Tumor DNA GenomeWideSNP_6.0

tag: tumor

tag: age

value: Female

tag: who grade


title: Seedlings sextuple PYR/PYL mutant 10 uM ABA 3 hours rep3 vs Seedlings reference Col-0 sample 10 uM ABA 3 hours

source_name: 15 days seedlings Sextuple PYR/PYL mutant rep3 treated with 10 uM ABA during 3 hours

tag: material

tag: genotype

tag: treatment

tag: genetic background


title: Sample#11 Tumor DNA GenomeWideSNP_6.0

tag: gender


title: Sample#11 Blood DNA GenomeWideSNP_6.0


title: gastrula 12 degreesBlock_3_BC1_12

description: Used

tag: deveopmental stage

tag: female

tag: sampling,time

tag: dasl,plate

tag: dasl,plate,row


title: gastrula 12 degreesBlock_3_BA1_12

description: Used

tag: male

tag: replicate

tag: block

tag: dasl,plate,column


title: gastrula 12 degreesBlock_3_AC2_12

description: Used

tag: temperature ©

tag: culture,stage,mean

tag: culture,stage,sd


title: Sample#G37RTumor DNA SNP_6.0

source_name: GBM tumor

tag: tissue

value: Relapsed Glioblastoma tissue

tag: age

tag: grade

value: IV

tag: karnofsky index(%)

tag: tumor localization

value: Temporal

tag: number of relapses

tag: survival after surgery


title: MtvsWT_BR3_TR2

city: Goettingen

first: Gabriela

last: Salinas

state: Lower-Saxony

address: Kreuzbergring 57

department: Department of Pathology

institute: Universitaetsmedizin Goettingen

description:
Mutant_vs_Wildtype_BiologicalReplicate3_TechnicalReplicate2
Sample 12

hyb_protocol: Hybridization was carried out in Tom Freeman hybridization buffer (Fitzpatrick et al., 2005) for 15h at 58°C with cDNA containing approximately 60pmol of Cy3 and Cy5 in an automatic Lucidea slide processor (GE Healthcare). Slides were washed using a program applying consecutive washes two times with 1x SSC buffer containing 0.2% SDS and then with 0.1x SSC. At the end the hybridization chambers were flushed with isopropanol and the slides were dried by evaporation.

scan_protocol: Arrays scanned using GenePix 4000B microarray scanner (Molecular Devices, Sunnyvale, CA, USA) with the GenePix Pro 6.0 software.

data_processing: To normalize the data the arithmetic mean of the ratios was set equal to 1 (GenePix Pro 6.0 software). Only features with fluorescence greater than the local background plus one standard deviation were included in the analysis. To correct for features with irregular spot morphology, only those were included differing less than 30% in the ratio of medians, the ratio of means and a regression ratio. Normalization with Loess using R package limma.

organism: Saccharomyces cerevisiae

source_name: Δasc1_aerobic liquid culture

label_protocol: 25μg of total RNA were labeled with Cy3 and Cy5, respectively, via random nonamers and anchored oligo(dT) primers, according to the CyScribe First-Strand cDNA Labeling Kit (GE Healthcare). Samples were purified using CyScribe GFX Purification Kit (GE Healthcare) according to supplier's instructions.

growth_protocol: Cells were grown at 30°C to midlog phase in 1l liquid minimal medium (YNB), containing uracil and tryptophan as required supplements, under aerobic conditions.

extract_protocol: Total RNA was extracted according to the hot phenol method described in Schmitt et al.,1990. and treated with DNAse in DNAse reaction buffer (Illustra RNA Spin Mini Kit, GE Healthcare), followed by phenolisation

treatment_protocol: Cells were harvested by centrifugation with ice at 3000rpm for 10min in a cooling centrifuge and washed twice with 50mM KPP-buffer (pH 7.5).

tag: genotype/varat

source_name: WT_aerobic liquid culture

tag: strain

value: WT


title: gastrula 12 degreesBlock_3_DA2_12

description: Used

source_name: gastrula 12 degrees

tag: deveopmental stage

value: gastrula stage embryo

tag: female

tag: sampling,time

tag: dasl,plate

tag: dasl,plate,row

value: A


title: Sample#9 Blood DNA GenomeWideSNP_6.0

source_name: Peripheral blood

tag: tumor

value: Pheripheral blood

tag: gender

tag: who grade


title: WtvsMT_BR3_TR1

description:
Wildtype_vs_Mutant_BiologicalReplicate3_TechnicalReplicate1
Sample 10


title: WtvsMT_BR3_TR2

description:
Wildtype_vs_Mutant_BiologicalReplicate3_TechnicalReplicate2
Sample 11


title: Seedlings sextuple PYR/PYL mutant 10 uM ABA 3 hours rep2 vs Seedlings reference Col-0 sample 10 uM ABA 3 hours

description: Sextuple PYR/PYL mutant labelled with Cy5 compared with Col-0 reference sample labelled with Cy3

source_name: 15 days seedlings Sextuple PYR/PYL mutant rep2 treated with 10 uM ABA during 3 hours

tag: material

tag: genotype

tag: treatment

tag: genetic background

tag: tissue


title: gastrula 12 degreesBlock_3_CC1_12

description: Used

tag: male

tag: replicate

tag: block

tag: temperature ©

tag: dasl,plate,column

tag: culture,stage,mean

tag: culture,stage,sd


title: Sample#8 Tumor DNA GenomeWideSNP_6.0

tag: age


title: MtvsWT_BR1_TR2

description:
Mutant_vs_Wildtype_BiologicalReplicate1_TechnicalReplicate2
Sample 4

tag: genotype/varat

tag: strain


title: WtvsMT_BR1_TR2

description:
Wildtype_vs_Mutant_BiologicalReplicate1_TechnicalReplicate2
Sample 3


title: MtvsWT_BR2_TR1

description:
Mutant_vs_Wildtype_BiologicalReplicate2_TechnicalReplicate1
Sample 5


title: MtvsWT_BR1_TR1

description:
Mutant_vs_Wildtype_BiologicalReplicate1_TechnicalReplicate1
Sample 1


title: gastrula 12 degreesBlock_3_BB1_12

description: Used

tag: deveopmental stage

tag: female

tag: sampling,time

tag: dasl,plate

tag: dasl,plate,row


title: Seedlings sextuple PYR/PYL mutant 10 uM ABA 3 hours rep1 vs Seedlings reference Col-0 sample 10 uM ABA 3 hours

source_name: 15 days seedlings Sextuple PYR/PYL mutant rep1 treated with 10 uM ABA during 3 hours

tag: material

tag: genotype

tag: treatment

tag: genetic background


title: WtvsMT_BR1_TR1

description:
Wildtype_vs_Mutant_BiologicalReplicate1_TechnicalReplicate1
Sample 2


title: MtvsWT_BR3_TR1

description:
Mutant_vs_Wildtype_BiologicalReplicate3_TechnicalReplicate1
Sample 9


title: WtvsMT_BR2_TR1

description:
Wildtype_vs_Mutant_BiologicalReplicate2_TechnicalReplicate1
Sample 6


title: Ex 3-4 DSC3 3

status: Public on Nov 27 2012

city: Bonn

first: Joachim

last: Schultze

state: NRW

address: Carl-Troll-Strasse 31

department: Genomics and Immunoregulation

institute: LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)

description: SAMPLE 21

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were normalised using quantile normalisation in R

label: biotin

source_name: SK-N-AS ATCC Nr. CRL-2137

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

growth_protocol: Cells were grown in DMEM (10% FCS; 37°C; 5% CO2) containing geniticin (400 µg/ml).

extract_protocol: Cells were scratched from surface, peletted and total RNA was extracted using RNeasy Kit, Qiagen.

tag: cell line

value: SK-N-AS (ATCC® CRL-2137)

tag: gender

value: female

tag: ethnicity

value: caucasian

tag: tissue

value: brain

tag: disease

value: neuroblastoma

tag: cell type

value: neuroblast

tag: derived from metastatic site

value: bone marrow

tag: transfection

value: cells transfected with pcDNA 3.1 exon d3-d4/DSC3


title: WtvsMT_BR2_TR2

description:
Wildtype_vs_Mutant_BiologicalReplicate2_TechnicalReplicate2
Sample 7

tag: genotype/varat

tag: strain


title: gastrula 12 degreesBlock_3_DD1_12

description: Used

tag: deveopmental stage

tag: female

tag: male

tag: replicate

tag: block

tag: temperature ©

tag: sampling,time

tag: dasl,plate,column

tag: culture,stage,mean

tag: culture,stage,sd


title: Sample#8 Blood DNA GenomeWideSNP_6.0

description: Hybridize to Genome-Wide Human SNP 6.0 Array

tag: tumor

tag: age

tag: gender

tag: who grade

value: Not applicable


title: Ex 3-4 DSC3 2

description: SAMPLE 20

tag: cell line

tag: ethnicity

tag: tissue

tag: disease

tag: cell type

tag: derived from metastatic site

tag: transfection


title: gastrula 12 degreesBlock_3_DC2_12

description: Used

tag: deveopmental stage

tag: female

tag: male

tag: replicate

tag: block

tag: dasl,plate

tag: dasl,plate,row


title: Sample#5 Blood DNA GenomeWideSNP_6.0

tag: tumor

tag: age

value: Female


title: Ex 3-4 DSC3 1

description: SAMPLE 19

tag: gender


title: Ex 3-4 WT 3

description: SAMPLE 18

tag: cell line

value: cells transfected with pcDNA 3.1 exon d3-d4/wt


title: vector only 3-4 2

description: SAMPLE 11

tag: ethnicity

value: cells transfected with pcDNA 3.1


title: vector only 3-4 1

description: SAMPLE 10

tag: tissue


title: Sample#4 Tumor DNA GenomeWideSNP_6.0

value: Meningioma tumor

value: Male

tag: who grade

value: I


title: untransfected 2

description: SAMPLE 5

tag: disease

tag: cell type

value: untransfected


title: Ex 3-4 WT 1

description: SAMPLE 16

tag: derived from metastatic site

tag: transfection


title: Ex 2-4 DSC3 3

description: SAMPLE 9

value: cells transfected with pcDNA 3.1 exon d2-d4/DSC3


title: Ex 2-4 WT 2

description: SAMPLE 14

value: SK-N-AS (ATCC® CRL-2137)

value: cells transfected with pcDNA 3.1 exon d2-d4/wt


title: MtvsWT_BR2_TR2

description:
Mutant_vs_Wildtype_BiologicalReplicate2_TechnicalReplicate2
Sample 8

tag: genotype/varat

tag: strain

value: WT


title: Ex 3-4 WT 2

description: SAMPLE 17

value: female

value: caucasian

value: brain


title: Ex 2-4 WT 3

description: SAMPLE 15

value: neuroblastoma

value: neuroblast

value: bone marrow


title: Ex 2-4 WT 1

description: SAMPLE 13


title: untransfected 3

description: SAMPLE 6


title: Ex 2-4 DSC3 1

description: SAMPLE 7


title: vector only 3-4 3

description: SAMPLE 12


title: Sample#3 Tumor DNA GenomeWideSNP_6.0

value: Female


title: vector only 2-4 1

description: SAMPLE 1


title: vector only 2-4 2

description: SAMPLE 2


title: vector only 2-4 3

description: SAMPLE 3


title: 11d_virgin_heterozygote_SBSb_colony_Pg346_2009

status: Public on Nov 07 2012

city: Lausanne

first: Mingkwan

last: Nipitwattanaphon

address: Biophore Building, UNIL-Sorge

department: Department of Ecology and Evolution

country: Switzerland

institute: University of Lausanne

description: RNA from the whole body of a single queen of specific genotype and age

hyb_protocol: Hybridization buffer (3x SSC, 0.18% SDS, 200 ng/μl yeast tRNA, 200 ng/µl polyA DNA; final concentration) was added to samples; samples were denatured, applied to microarrays, and hybridized overnight at 64°C. After hybridization, slides were washed sequential.

scan_protocol: Scanner: Agilent Technologies microarray scanner. Image quantification GenePix 5.1

data_processing: printTipLoess normalization and between-array normalization with limma (Bioconductor)

organism: Solenopsis invicta

source_name: Reference RNA batch 2006

label_protocol: Total RNA was amplified using the Ambion Message Amp II kit. Amplified RNA plus Alien spike control RNAs (Stratagene) were labeled using the indirect aa-dUTP labeling method. Reverse transcription primers: random 9mers.

extract_protocol: Total RNA extracted using Qiagen RNeasy Kit following manufacturer's instructions

value: whole organism

tag: batch

value: year 2006

tag: sample type

value: Amplified total RNA isolated en masse from hundreds of adult workers collected from the foraging area of 30 colonies (eight and seven of each social form from Georgia and Louisiana, respectively)

source_name: 11-day-old virgin heterozygote SB/Sb

value: Genotype - SB/Sb, Age - 11-day-old virgin, Year - 2009, Social form - polygyne

tag: genotype

value: SB/Sb

value: year 2009

value: 11-day-old virgin

tag: state

value: virgin

tag: social form

value: polygyne


title: 11d_virgin_heterozygote_SBSb_colony_Pg359_2009

tag: age


title: 11d_virgin_heterozygote_SBSb_colony_Pg347_2009


title: Sample#4 Blood DNA GenomeWideSNP_6.0

tag: tumor

value: Pheripheral blood

tag: gender

value: Male

value: Not applicable


title: Sample#5 Tumor DNA GenomeWideSNP_6.0

value: Meningioma tumor

value: I


title: Ex 2-4 DSC3 2

description: SAMPLE 8

tag: cell line

value: SK-N-AS (ATCC® CRL-2137)

value: female

tag: ethnicity

value: caucasian

value: brain

value: neuroblastoma

value: neuroblast

value: cells transfected with pcDNA 3.1 exon d2-d4/DSC3


title: Sample#3 Blood DNA GenomeWideSNP_6.0

value: Female

tag: who grade


title: 11d_virgin_heterozygote_SBSb_colony_Pg329_2009

tag: tissue

value: whole organism

value: year 2006

value: Amplified total RNA isolated en masse from hundreds of adult workers collected from the foraging area of 30 colonies (eight and seven of each social form from Georgia and Louisiana, respectively)

value: Genotype - SB/Sb, Age - 11-day-old virgin, Year - 2009, Social form - polygyne

value: SB/Sb

value: year 2009


title: 11d_virgin_heterozygote_SBSb_colony_Pg343_2009

value: 11-day-old virgin

value: virgin

value: polygyne


title: 11d_virgin_homozygote_SBSB_colony_Pg359_2009

source_name: 11-day-old virgin homozygote SB/SB

value: Genotype - SB/SB, Age - 11-day-old virgin, Year - 2009, Social form - polygyne

value: SB/SB


title: HCC1569_5AZA

status: Public on Oct 19 2012

city: Dallas

first: David

last: Euhus

state: TX

address: 5323 Harrry Hines Blvd

department: Surgery

institute: UT Southwestern Medical Center

data_processing:
The initial analysis was done in GeneSpring  v11 as follows. Flags were set to present for entities with detection P-values < 0.2 and absent for entities with detection P-values > 0.4.  Raw signals with values < 1 were reset to 1. Quantile normalization was used and baseline transformation performed based on the median expression level for all entities. Of the 48,701 entities included on the Illumina array, flags were present or marginal for 75% of the samples for 27,324 entities and these were retained.
Matrix non-normalized is average raw intensity and detection P-value; Matrix normalized is thresholded, median transformed, and  quantile normalized mean intensity.

extract_protocol: RNA prepared  using the Illumina TotalPrep kit (AMIL1791, Life Technologies, Grand Island, NY).

treatment_protocol: The breast cancer cell lines, HME cultures, and MC10A cells were treated with 0.5 microM 5AZA (Sigma-Aldrich, St. Louis, MO) in DMSO or DMSO alone for six days after which the cells were harvested.

tag: Sex

value: female

value: breast

tag: disease status

value: maligant

tag: cell type

value: cell line


title: 1d_virgin_heterozygote_SBSb_colony_Pg347_2009

source_name: 1-day-old virgin heterozygote SB/Sb

value: Genotype - SB/Sb, Age - 1-day-old virgin, Year - 2009, Social form - polygyne

value: 1-day-old virgin


title: MDAMB231_5AZA


title: 11d_virgin_homozygote_SBSB_colony_Pg343_2009

value: whole organism


title: 11d_virgin_homozygote_SBSB_colony_Pg346_2009

value: year 2006


title: 11d_virgin_homozygote_SBSB_colony_Pg347_2009

value: Amplified total RNA isolated en masse from hundreds of adult workers collected from the foraging area of 30 colonies (eight and seven of each social form from Georgia and Louisiana, respectively)


title: 1d_virgin_heterozygote_SBSb_colony_Pg359_2009


title: HCC1569_DMSO


title: 1d_virgin_heterozygote_SBSb_colony_Pg329_2009


title: 11d_virgin_homozygote_SBSB_colony_Pg329_2009


title: 1d_virgin_heterozygote_SBSb_colony_Pg343_2009


title: 1d_virgin_homozygote_SBSB_colony_Pg343_2009

source_name: 1-day-old virgin homozygote SB/SB

value: Genotype - SB/SB, Age - 1-day-old virgin, Year - 2009, Social form - polygyne


title: HTB122_DMSO


title: 1d_virgin_heterozygote_SBSb_colony_Pg346_2009

value: SB/Sb


title: 1d_virgin_homozygote_SBSB_colony_Pg346_2009

value: year 2009


title: 1d_virgin_homozygote_SBSB_colony_Pg359_2009


title: 1d_virgin_homozygote_SBSB_colony_Pg347_2009


title: MDAMB231_DMSO


title: 1d_virgin_homozygote_SBSB_colony_Pg329_2009


title: HTB122_5AZA


title: HCC1954_DMSO


title: MCF7_5AZA


title: Strain SCC2302 rep 2

status: Public on Sep 28 2012

city: Seattle

first: Weerayuth

last: Kittichotirat

state: WA - Washington

address: 960 Republican st

department: Microbiology

institute: University of Washington

description: Comparative genomic hybridization of Aggregatibacter actinomycetemcomitans strain SCC2302

hyb_protocol: 40µl hybridization sample mixture was loaded onto the glass slide and incubated at 65°C for 24 hours with rotation. The arrays were then washed with Agilent CGH wash buffer

scan_protocol: Arrays were scanned using an Agilent scanner 6000C with the manufacturer’s recommended settings for aCGH arrays (scan area 61 x 21.6mm, 5um resolution, 100% PMT R&G). Data was extracted from the scanner using Agilent Feature Extractor v10.5 software using protocol CGH_105_Dec08.

data_processing: The signal data obtained from the Agilent Feature Extraction Software were processed using the following steps. First the gProcessedSignal value, which is a background subtracted signal, for each probe was extracted. Since the labeling process involved incorporating Cyanine 3-dUTP into the genomic sample, it is possible that probes that are rich in nucleotide A have higher signal relative to probes with lower A content and may not accurately reflect the true abundant of the target sequence. For this reason, the signal values were normalized by dividing them with the total number of A nucleotides in the probe sequence. Finally this value was transformed using log2. Processed signal values from probes that are targeting the same gene cluster were consolidated into a single value by averaging the signals.

organism: Aggregatibacter actinomycetemcomitans

source_name: Genomic DNA

label_protocol: 0.5µg of genomic DNA was labeled with cyanine3. DNA denaturation and fragmentation was done using a thermocycler by mixing 2.5µl of Random Primers (Agilent) and 13µl of genomic DNA at 94°C for 10 minutes. The mixture was cooled to 4°C degree and 9.5µl of labeling master mix (Agilent) was added to make a total volume of 25µl. DNA labeling was done using a thermocycler following the steps: 37°C for 2 hours, 65°C for 10 minutes, and hold at for 4°C. Labeled genomic DNA was purified using individual Amicon 30kDA filters (Millipore) following manufacturer’s protocol. The yield of labeled DNA was determined by measuring the absorbance at A260nm (DNA) and A550nm (cyanine 3) using Nano-Drop (ND-1000).

growth_protocol: A. actinomycetemcomitans was grown on tryptic soy agar plate with 0.6% yeast extract for two days at 37°C in atmosphere supplemented with 5% CO2, and harvested by washing the bacteria off the plates with PBS buffer.

extract_protocol: Genomic DNA was isolated using the Qiagen DNeasy Blood & Tissue Kit (Qiagen, Valencia, CA 91355 USA) according the manufacturer’s manual.

tag: serotype

value: c


title: Strain I23C rep 1

description: Comparative genomic hybridization of Aggregatibacter actinomycetemcomitans strain I23C

value: b

tag: strain


title: HME4231_5AZA

value: benign

value: primary culture


title: Strain SCC2302 rep 1


title: HCC1954_5AZA


title: HME4230_DMSO


title: HME4005_5AZA


title: Strain SCC1398 rep 2_2

description: Comparative genomic hybridization of Aggregatibacter actinomycetemcomitans strain SCC1398


title: Strain SCC393 rep 1

description: Comparative genomic hybridization of Aggregatibacter actinomycetemcomitans strain SCC393

value: e


title: Strain SCC1398 rep 1_2


title: HME4001_5AZA

value: female


title: UACC3199_DMSO

value: breast


title: HME4231_DMSO


title: HME4005_DMSO


title: MCF7_DMSO

value: maligant


title: MCF10A_5AZA

value: immortalized

value: cell line


title: HME4230_5AZA


title: MCF10A_DMSO


title: HME4003_DMSO


title: UACC3199_5AZA


title: HME4001_DMSO


title: HME4301_DMSO


title: HME4301_5AZA


title: Strain SCC393 rep 2


title: untransfected 1

description: SAMPLE 4

value: SK-N-AS (ATCC® CRL-2137)

value: caucasian

value: brain

tag: disease

value: neuroblastoma

value: neuroblast

tag: derived from metastatic site

value: bone marrow

tag: transfection

value: untransfected


title: Heart sham surgery Blank control

status: Public on Jun 09 2012

city: Guangzhou

first: Wei

last: Ouyang

state: Guangdong

address: 253 Gongyedadao Road, Guangzhou, People's Republic of China

department: Department of Nuclear Medicine,Zhujiang Hospital, Southern Medical University,Guangzhou,  People's Republic of China

country: China

description: The miRNAs in Sham-operated rats were set up as the blank control.

hyb_protocol: After the labeling procedure, the Hy3TM-labeled samples were hybridized to a miRCURYTM LNA Array (v.16.0) (Exiqon),which contains more than 1,891 capture probes covering all of the human, mouse and rat miRs annotated in miRBase 16.0, as well as all viral miRs related to these species.

scan_protocol: The images on the chip were scanned and imported into GenePix Pro 6.0 software (Axon) for grid alignment and data extraction.

data_processing: The 5 replicates were averaged, and the miRs that underwent a >= 2-fold change in expression between the TAC and sham groups were selected for analysisand.Meanwhile,the miRs with intensities > 50 in all samples were used to calculate the normalization factor. Expression data were normalized using the median normalization. After normalization, differentially expressed miRs were identified by fold change filtering (fold change >= 2). Hierarchical clustering was performed using MEV software (v4.6, TIGR).

organism: Rattus norvegicus

source_name: Hearts of 5 Rattus norvegicuses ,sham surgery, 5 days after

label_protocol: After RNA isolation from the hearts, one microgram of each sample was 3'-end-labeled with a Hy3TM fluorescent label (Exiqon, Denmark) using T4 RNA ligase.

growth_protocol: SD male rats (6-8 weeks old, 200-300 g) were housed at 20±2°C and 55±20% humidity with 12-hr light/dark cycles and free access to food and water in the Animal Care Facility at the Sun Yat-sen University (SYSU) School of Medicine.

extract_protocol: Total RNA was isolated from hearts at 5, 10, 15 and 20 days after TAC or sham surgery using TRIzol (Invitrogen，Life Technologies，New York， USA) and an miRNeasy Mini kit (QIAGEN, Valencia, CA, USA) according to the manufacturer’s instructions. RNA quality and quantity were measured using a Nanodrop spectrophotometer (ND-1000, Thermo Fisher Scientific, Wilmington, DE, USA), and RNA integrity was determined by denaturing agarose gel electrophoresis.

treatment_protocol: The SD rats were subjected to transverse aortic constriction surgery. Rats were anesthetized with barbital sodium administrated intraperitoneally at 200 mg/kg body weight. An approximately two-centimeter incision was made at the level of the cricoid process and dissected down to the clavicle. After cutting the right clavicle, the thymus was retracted gently, and the aortic arch was exposed. A constriction of the aortic arch was conducted between both carotid arteries using an 18 gauge angiocatheter. Sham-operated rats were underwent a similar surgical procedure without constriction of the aorta. After TAC surgery, the chest was closed with a 5-0 nylon suture, and mice were placed on a heating pad at 37°C until they had completely recovered from anesthesia.

value: Male

value: SD

tag: surgery

value: Sham

tag: sample time after surgery

value: 5 days


title: Heart TAC surgery 5 days after

institute: Zhujiang Hospital, Southern Medical University,Guangzhou,  People's Republic of China

source_name: Hearts of 5 Rattus norvegicuses, TAC surgery, 5 days after

value: TAC


title: 8-day Cux2-siRNA-treated female CD-1 mouse liver Replicate #2

status: Public on Sep 10 2012

city: Boston

middle: J.

last: Waxman

state: MA

address: 5 Cummington Mall

department: Department of Biology and Bioinformatics Program

institute: Boston University

description:
8 wk CD-1 non-specific siRNA treated female mouse liver/8 wk CD-1 Cux2 siRNA 8 day treated female mouse liver/Replicate#2
The expression profile for a pool of RNAs isolated from n=6 8 wk old female mouse livers treated with non-specific siRNA vs. a pool of RNAs isolated from n=2 8 wk old female mouse livers treated with Cux2 siRNA for 8 days is given as a normalized ratio.  The purpose of this comparison is to identify differences in gene expression due to knockdown of Cux2 expression in female mouse liver.

hyb_protocol: Hybridization was performed using 0.825 µg of Alexa 555-labeled aRNA and 0.825 µg of Alexa 647-labeled aRNA. Agilent’s SureHyb hybridization chambers were used in a hybridization oven and rotation rack for 17 hr at 65° C at 10 rpm. After hybridization, the slides were washed per Agilent’s SSPE wash protocol.

scan_protocol: Slides were scanned using an Agilent dual laser scanner using the extended dynamic range option, which utilizes two 5 m scans of each slide at settings of PMT 100% and PMT 10% to increase signal dynamic range and avoid feature saturation. TIFF images were analyzed using Agilent’s feature extraction software (version 9.5.3, protocol GE2-v5_91_0806).

data_processing: Linear and LOWESS normalization and analysis using Rosetta Resolver pipeline (version 5.1)

label: Alexa 647

organism: Mus musculus

source_name: non-specific siRNA treated 8 week CD-1 female mouse liver

label_protocol: RNA samples were amplified as antisense-RNA (aRNA) while incorporating aminoallyl modified bases using the TargetAMP 1-Round Aminoallyl-aRNA Amplification Kit 101 per the vendor’s protocol (Epicentre, Madison, WI).  Five µg of each aminoallyl-aRNA sample was fluorescent labeled using Alexa 555 or Alexa 647 by incubating with an amine-reactive dye conjugate for 1 hr at room temperature.  Unincorporated dye was removed using an RNeasy column (Qiagen, Valencia, CA).  Dye incorporation efficiency was determined using a Nanodrop spectrophotometer.

extract_protocol: Trizol extraction of RNA

value: Female

tag: age

value: 8 wk

tag: treatment

value: non-specific siRNA

value: liver

label: Alexa 555

source_name: Cux2 siRNA 8 day treated 8 week CD-1 female mouse liver

value: Cux2 siRNA


title: Jurkat clone transfected with pCMV-Tax

status: Public on Aug 09 2012

city: Doylestown

first: Rasha

last: Elbaz

address: 3805 Old Easton Road

institute: Drexel University College Of Medicine

description: This Sample represents 3 replicates.

hyb_protocol: The labeled miRNA was hybridized as per the manufacturer's protocol (Invitrogen).

scan_protocol: The hybridized slides were scanned on the microarray scanner GenePix 4000A (Axon Instruments) at 635 and 532nm.

data_processing: The mean of the triplicates was taken and normalized to internal controls using Microsoft Excel.

source_name: Jurkat clone transfected with pCMV-Tax

label_protocol: The total miRNA was labeled as per the manufacturer's protocol (Invitrogen).

growth_protocol: The Jurkat cells were grown in complete RPMI medium.

extract_protocol: The total miRNA was isolated from cells by using the Total miRNA Isolation kit (Invitrogen).

treatment_protocol: The stably integrated Jurkat clone (with HTLV-1 LTR) was transfected with pCMV or pCMV-Tax.

value: Jurkat clone with stably integrated HTLV-1 LTR-luc

value: CD4+ T cells

value: pCMV-Tax

source_name: Jurkat clone transfected with pCMV

value: pCMV


title: Granulosa_Fzd1 WT_rep2

status: Public on Sep 01 2012

city: Saint-Hyacinthe

first: Derek

last: Boerboom

address: 3200 rue Sicotte

institute: Centre de recherche en reproduction animale

data_processing: Microarray data were analyzed using FlexArray 1.6.1 software (Génome Québec, Montreal, Qc, Canada)    The raw data were processed the following way:  Background correction: Force positive (add constant)  Variance Stabilization: VST  Normalization: Robust spline normalization    This was followed by a t-test

source_name: Granulosa cells, 12h post-hCG, WT mice

label_protocol: Performed by Génome Québec (Montreal, Qc, Canada)

growth_protocol: Granulosa cells were obtained from 23 to 26 day-old mice 48h following treatment with eCG (5 IU i.p.) and with the subsequent administration of an ovulatory dose of hCG (5 IU i.p.) for 12h. Ovaries were placed in HBSS and punctured to release granulosa cells. Granulosa cells were centrifuged and frozen at -80 °C.

extract_protocol: Rneasy mini kit (Qiagen) extraction of total RNA was performed according to the manufacturer's instruction  Rneasy mini kit (Qiagen) extraction of total RNA was performed according to the manufacturer's instruction

tag: gender

value: female

value: 26 day old

tag: treatment of the mice

value: treated with eCG for 48h and hCG for 12h

value: granulosa cells

tag: genotype

value: Fzd1 WT


title: Granulosa_Fzd1 WT_rep3


title: Granulosa_Fzd1 WT_rep1


title: Granulosa_Fzd1 KO_rep1

source_name: Granulosa cells, 12h post-hCG, KO mice

value: Fzd1 KO


title: 8-day Cux2-siRNA-treated female CD-1 mouse liver Replicate #1

description:
8 wk CD-1 non-specific siRNA treated female mouse liver/8 wk CD-1 Cux2 siRNA 8 day treated female mouse liver/Replicate#1
The expression profile for a pool of RNAs isolated from n=6 8 wk old female mouse livers treated with non-specific siRNA vs. a pool of RNAs isolated from n=2 8 wk old female mouse livers treated with Cux2 siRNA for 8 days is given as a normalized ratio.  The purpose of this comparison is to identify differences in gene expression due to knockdown of Cux2 expression in female mouse liver.


title: 5-day Cux2-siRNA-treated female CD-1 mouse liver Replicate #1

description:
8 wk CD-1 non-specific siRNA treated female mouse liver/8 wk CD-1 Cux2 siRNA 5 day treated female mouse liver/Replicate#1
The expression profile for a pool of RNAs isolated from n=6 8 wk old female mouse livers treated with non-specific siRNA vs. a pool of RNAs isolated from n=3 8 wk old female mouse livers treated with Cux2 siRNA for 5 days is given as a normalized ratio.  The purpose of this comparison is to identify differences in gene expression due to knockdown of Cux2 expression in female mouse liver.

source_name: Cux2 siRNA 5 day treated 8 week CD-1 female mouse liver


title: Granulosa_Fzd1 KO_rep2


title: 5-day Cux2-siRNA-treated female CD-1 mouse liver Replicate #2

description:
8 wk CD-1 non-specific siRNA treated female mouse liver/8 wk CD-1 Cux2 siRNA 5 day treated female mouse liver/Replicate#2
The expression profile for a pool of RNAs isolated from n=6 8 wk old female mouse livers treated with non-specific siRNA vs. a pool of RNAs isolated from n=2 8 wk old female mouse livers treated with Cux2 siRNA for 5 days is given as a normalized ratio.  The purpose of this comparison is to identify differences in gene expression due to knockdown of Cux2 expression in female mouse liver.


title: YKG1

status: Public on Mar 20 2012

city: Cambridge

first: Nicolas

last: Stransky

address: 7 Cambridge center

department: Cancer Program

institute: Broad Institute

description: SNP array data from the CCLE

hyb_protocol: After denaturation, 200ul of sample are injected into a Genome-Wide Human SNP 6.0 array. Arrays are loaded in the GeneChip® Hybridization Oven 640 @ 50 °C temp, rotating arrays @ 60 rpm. Samples are hybridized for 16 to 18 hours.

scan_protocol: Genome-Wide Human SNP Array 6.0 are stained using the GeneChip® Fluidics Station 450 and scanned using the GeneChip® Scanner 3000

data_processing: The raw CEL files were normalized to copy number estimates using a GenePattern pipeline, as described in Cancer Genome Atlas Research Network et al, Nature, 2008, and hg18 Affymetrix probe annotations. Normalized copy number estimates (log2 ratios) were segmented using the Circular Binary Segmentation (CBS) algorithm, followed by median centering of the segment values to a value of zero in each sample.

source_name: HSRRB

label_protocol: PCR amplification fragments (200 and 1100 bp) are labeled using terminal deoxynucleotidyl transferase following the Affymetrix GenomeWideSNP_6 protocol

growth_protocol: Cells lines were cultured following growth recommendations from the cell line source vendors. Cells were incubated at 37 ºC at 5% CO2 until 70% confluency was reached.  Pellets were harvested 48 hours post media change, flash frozen, and stored at -80 ºC until nucleic acid extraction.

extract_protocol: DNA was extracted from frozen cell pellets, containing an average cell count of 4.5 million cells, using the Qiagen Gentra Puregene method following the manufacturers recommendations. Samples were quantified using picogreen on a ThermoScientific Varioskan Flash instrument.

tag: primary site

tag: histology

value: glioma

tag: histology subtype1


title: K-L-L

status: Public on Aug 17 2012

city: Bethesda

first: Mingfang

last: Lu

state: MD

address: 9000 Rockville Pike

department: LCID

institute: NIH/NIAID

description: Aoah -/- peritoneal macrophages challenged with 1 ug/ml LPS ex vivo (induced)

data_processing: Differential gene expression was analyzed using the Aoah+/+ group as the principal group. Average signal intensities were normalized by cubic spline.  Group normalization was performed using the Illumina Custom Model (built into GenomeStudio). Statistical significance was determined using GenomeStudio’s ‘Difference Score’ (DS), which combines detection p-value, average signal strength (after normalization), and difference p-value into a single statistical parameter. To estimate significant differences, we used a ‘Difference score’ of ≥ 30 or ≤ -30. This is a robust criterion corresponding to a difference p-value of ≤ 0.001. Three replicates were combined into a single VALUE.

source_name: peritoneal macrophages

extract_protocol: RNA was isolated using RNeasy (Qiagen) per manufacturer’s instructions. RNA quality and quantity was determined using the Agilent Bioanalyzer chip (RNA 6000 Nano kit).

value: peritoneal macrophages

tag: genotype/variation

value: Aoah -/-

tag: in vivo priming

value: 10 ug E. coli LPS/mouse i.p.

tag: time to harvest

value: 21 days

tag: pre-challenge incubation

value: 16 hours (overnight)

tag: ex vivo challenge

value: 1 ug/ml E. coli LPS

tag: ex vivo challenge time

value: 2 hours


title: ZR-75-30

description: SNP array data from the CCLE

source_name: ATCC

value: breast

value: carcinoma


title: Granulosa_Fzd1 KO_rep3

tag: strain

tag: cell type


title: YH-13

description: SNP array data from the CCLE


title: ZR-75-1

description: SNP array data from the CCLE


title: HBL1 cells treated with mepazine for 24h

status: Public on Jul 31 2012

city: Münster

first: Michael

last: Grau

state: Nordrhein-Westfalen

address: Albert-Schweitzer-Campus 1

department: Faculty of Medicine

institute: University of Münster

description: Homo Sapiens ABC DLBCL cell line HBL1 treated with mepazine for 24h versus DMSO control.

hyb_protocol: hybridization was performed according Agilent Technologies protocol (Two-Color Microarray-Based Gene Expression Analysis - Low Input Quick Amp Labeling v.6.5)

scan_protocol: Scanned on an Agilent Technologies Scanner G2505C US11163898. Images were quantified using Agilent Feature Extraction Software (version 10.10.1.1).

data_processing: Agilent Feature Extraction Software (version 10.10.1.1) was used for background subtraction and LOWESS normalization.

source_name: HBL1 ABC-DLBCL cell line

label_protocol: Cy3 and Cy5 labeling was performed according Agilent Technologies protocol (Two-Color Microarray-Based Gene Expression Analysis - Low Input Quick Amp Labeling v.6.5)

extract_protocol: RNA extraction from the cells was performed with the RNeasy Mini Kit (Qiagen) and genomic DNA was eliminated with the RQ1 RNase free DNase (Promega) according to the manufacturer’s protocol.

tag: date of measurement

tag: duration [h]

value: 20 µM of mepazine

value: DMSO


title: YMB-1

description: SNP array data from the CCLE


title: YD-15

description: SNP array data from the CCLE

source_name: KCLB


title: YD-38

description: SNP array data from the CCLE


title: YD-8

description: SNP array data from the CCLE


title: HBL1 cells treated with mepazine for 12h

description: Homo Sapiens ABC DLBCL cell line HBL1 treated with mepazine for 12h versus DMSO control.

tag: treatment


title: K-L-P

description: Aoah -/- peritoneal macrophages challenged with PBS ex vivo (uninduced)

value: PBS


title: HBL1 cells treated with mepazine for 6h

description: Homo Sapiens ABC DLBCL cell line HBL1 treated with mepazine for 6h versus DMSO control.


title: YD-10B

description: SNP array data from the CCLE


title: W-L-P

description: Aoah +/+ peritoneal macrophages challenged with PBS ex vivo (uninduced)

value: Aoah +/+


title: W-L-L

description: Aoah +/+ peritoneal macrophages challenged with 1 ug/ml LPS ex vivo (induced)


title: HME4003_5AZA

tag: Sex

value: female

tag: tissue

tag: disease status

value: benign

value: primary culture


title: WM-983B

description: SNP array data from the CCLE

source_name: Academic Lab

tag: primary site

value: skin


title: VM-CUB1

description: SNP array data from the CCLE

source_name: DSMZ

tag: histology


title: WSU-DLCL2

description: SNP array data from the CCLE

tag: histology subtype1


title: WM-88

description: SNP array data from the CCLE


title: WM-115

description: SNP array data from the CCLE


title: VCaP

description: SNP array data from the CCLE

value: prostate

value: adenocarcinoma


title: YAPC

description: SNP array data from the CCLE

value: pancreas


title: WM1799

description: SNP array data from the CCLE


title: WM-266-4

description: SNP array data from the CCLE


title: VMRC-RCW

description: SNP array data from the CCLE

source_name: RIKEN

value: kidney


title: UACC-893

description: SNP array data from the CCLE


title: VMRC-RCZ

description: SNP array data from the CCLE


title: UT-7

description: SNP array data from the CCLE


title: UACC-62

description: SNP array data from the CCLE

source_name: NCI/DCTD


title: UACC-812

description: SNP array data from the CCLE


title: WM-793

description: SNP array data from the CCLE


title: UM-UC-3

description: SNP array data from the CCLE


title: UACC-257

description: SNP array data from the CCLE


title: U-87 MG

description: SNP array data from the CCLE

value: glioma

value: astrocytoma


title: U-138 MG

description: SNP array data from the CCLE


title: U-251 MG

description: SNP array data from the CCLE


title: U-2 OS

description: SNP array data from the CCLE

value: bone

value: osteosarcoma


title: UM-UC-1

description: SNP array data from the CCLE

source_name: ECACC

value: carcinoma


title: U266B1

description: SNP array data from the CCLE


title: U-937

description: SNP array data from the CCLE


title: TYK-nu

description: SNP array data from the CCLE

value: ovary


title: TUHR4TKB

description: SNP array data from the CCLE


title: TUHR10TKB

description: SNP array data from the CCLE


title: TUHR14TKB

description: SNP array data from the CCLE


title: TT

description: SNP array data from the CCLE

value: thyroid


title: T.T

description: SNP array data from the CCLE

value: oesophagus


title: TOV-21G

description: SNP array data from the CCLE


title: TO 175.T

description: SNP array data from the CCLE


title: U-118 MG

description: SNP array data from the CCLE


title: Toledo

description: SNP array data from the CCLE


title: THP-1

description: SNP array data from the CCLE


title: TOV-112D

description: SNP array data from the CCLE


title: TT2609-C02

description: SNP array data from the CCLE


title: TM-31

description: SNP array data from the CCLE


title: TF-1

description: SNP array data from the CCLE


title: TE-9

description: SNP array data from the CCLE


title: TEN

description: SNP array data from the CCLE

value: endometrium


title: TE-6

description: SNP array data from the CCLE


title: TE-8

description: SNP array data from the CCLE


title: TE-5

description: SNP array data from the CCLE


title: TE 441.T

description: SNP array data from the CCLE

value: rhabdomyosarcoma


title: TGBC11TKB

description: SNP array data from the CCLE

value: stomach


title: TE-4

description: SNP array data from the CCLE


title: TE-1

description: SNP array data from the CCLE


title: TCCSUP

description: SNP array data from the CCLE


title: TE 617.T

description: SNP array data from the CCLE


title: TE-10

description: SNP array data from the CCLE


title: TE-14

description: SNP array data from the CCLE


title: TCC-PAN2

description: SNP array data from the CCLE


title: TALL-1

description: SNP array data from the CCLE


title: TE-11

description: SNP array data from the CCLE


title: T84

description: SNP array data from the CCLE


title: T-47D

description: SNP array data from the CCLE

value: breast


title: T98G

description: SNP array data from the CCLE


title: TE-15

description: SNP array data from the CCLE


title: T1-73

description: SNP array data from the CCLE


title: SW579

description: SNP array data from the CCLE


title: SW837

description: SNP array data from the CCLE


title: SW620

description: SNP array data from the CCLE


title: SW403

description: SNP array data from the CCLE


title: SW 780

description: SNP array data from the CCLE


title: SW480

description: SNP array data from the CCLE


title: SW48

description: SNP array data from the CCLE


title: T3M-4

description: SNP array data from the CCLE


title: SW 1990

description: SNP array data from the CCLE


title: SW948

description: SNP array data from the CCLE


title: SW 900

description: SNP array data from the CCLE

value: lung


title: TC-71

description: SNP array data from the CCLE


title: T24

description: SNP array data from the CCLE


title: SUP-T1

description: SNP array data from the CCLE


title: SW1116

description: SNP array data from the CCLE


title: SW 1783

description: SNP array data from the CCLE


title: SW 1271

description: SNP array data from the CCLE


title: SU-DHL-4

description: SNP array data from the CCLE


title: SW 1353

description: SNP array data from the CCLE

value: chondrosarcoma


title: SW 1573

description: SNP array data from the CCLE


title: SU-DHL-6

description: SNP array data from the CCLE


title: SW1417

description: SNP array data from the CCLE

value: adenocarcinoma


title: SW 1088

description: SNP array data from the CCLE


title: SUIT-2

description: SNP array data from the CCLE

value: pancreas


title: SUP-B15

description: SNP array data from the CCLE


title: SU-DHL-5

description: SNP array data from the CCLE


title: SUP-M2

description: SNP array data from the CCLE


title: SUP-HD1

description: SNP array data from the CCLE


title: SW-1710

description: SNP array data from the CCLE


title: SU-DHL-8

description: SNP array data from the CCLE


title: SU-DHL-10

description: SNP array data from the CCLE


title: SUP-T11

description: SNP array data from the CCLE


title: SU-DHL-1

description: SNP array data from the CCLE


title: ST486

description: SNP array data from the CCLE


title: SR-786

description: SNP array data from the CCLE


title: SW1463

description: SNP array data from the CCLE


title: SU.86.86

description: SNP array data from the CCLE


title: SNU-C5

description: SNP array data from the CCLE


title: SNU-C4

description: SNP array data from the CCLE


title: SNU-C2A

description: SNP array data from the CCLE


title: SNU-878

description: SNP array data from the CCLE

value: liver


title: Sq-1

description: SNP array data from the CCLE


title: SNU-899

description: SNP array data from the CCLE


title: SNU-719

description: SNP array data from the CCLE


title: SNU-626

description: SNP array data from the CCLE

value: glioma


title: SNU-61

description: SNP array data from the CCLE


title: SNU-761

description: SNP array data from the CCLE


title: SNU-685

description: SNP array data from the CCLE


title: SNU-5

description: SNP array data from the CCLE


title: SNU-81

description: SNP array data from the CCLE


title: SNU-840

description: SNP array data from the CCLE


title: SNU-601

description: SNP array data from the CCLE


title: SNU-668

description: SNP array data from the CCLE


title: SNU-478

description: SNP array data from the CCLE


title: SNU-503

description: SNP array data from the CCLE


title: SNU-46

description: SNP array data from the CCLE


title: SNU-475

description: SNP array data from the CCLE


title: SNU-C1

description: SNP array data from the CCLE


title: SNU-466

description: SNP array data from the CCLE


title: SNU-738

description: SNP array data from the CCLE

value: oligodendroglioma


title: SNU-520

description: SNP array data from the CCLE


title: SNU-449

description: SNP array data from the CCLE


title: SNU-620

description: SNP array data from the CCLE


title: SNU-489

description: SNP array data from the CCLE


title: SNU-410

description: SNP array data from the CCLE


title: SNU-407

description: SNP array data from the CCLE


title: SNU-387

description: SNP array data from the CCLE


title: SNU-423

description: SNP array data from the CCLE


title: SNU-324

description: SNP array data from the CCLE


title: SNU-308

description: SNP array data from the CCLE


title: SNU-1

description: SNP array data from the CCLE


title: SNU-245

description: SNP array data from the CCLE


title: SNU-283

description: SNP array data from the CCLE


title: SNU-398

description: SNP array data from the CCLE


title: SNU-216

description: SNP array data from the CCLE


title: SNU-201

description: SNP array data from the CCLE


title: SNU-213

description: SNP array data from the CCLE


title: SNU-182

description: SNP array data from the CCLE


title: SNU-1272

description: SNP array data from the CCLE

value: kidney


title: SNU-1079

description: SNP array data from the CCLE


title: SNU-1214

description: SNP array data from the CCLE


title: SNB-19

description: SNP array data from the CCLE


title: SNU-349

description: SNP array data from the CCLE


title: SNU-1105

description: SNP array data from the CCLE


title: SNU-1076

description: SNP array data from the CCLE


title: SNU-1196

description: SNP array data from the CCLE


title: SNU-119

description: SNP array data from the CCLE


title: SK-UT-1

description: SNP array data from the CCLE

value: leiomyosarcoma


title: SK-OV-3

description: SNP array data from the CCLE

value: carcinoma


title: SK-N-DZ

description: SNP array data from the CCLE

value: neuroblastoma


title: SK-N-FI

description: SNP array data from the CCLE


title: SNU-175

description: SNP array data from the CCLE


title: SNU-1040

description: SNP array data from the CCLE


title: SK-N-BE(2)

description: SNP array data from the CCLE


title: SK-N-MC

description: SNP array data from the CCLE

value: bone


title: SK-N-SH

description: SNP array data from the CCLE


title: SNG-M

description: SNP array data from the CCLE


title: SK-MM-2

description: SNP array data from the CCLE


title: SNU-1077

description: SNP array data from the CCLE


title: SK-MES-1

description: SNP array data from the CCLE


title: SK-MEL-31

description: SNP array data from the CCLE

value: skin


title: SK-MEL-5

description: SNP array data from the CCLE


title: SK-N-AS

description: SNP array data from the CCLE


title: SK-MEL-3

description: SNP array data from the CCLE


title: SK-MEL-24

description: SNP array data from the CCLE


title: SK-MEL-2

description: SNP array data from the CCLE


title: SK-MEL-28

description: SNP array data from the CCLE


title: SK-LMS-1

description: SNP array data from the CCLE

value: sarcoma


title: SK-MEL-1

description: SNP array data from the CCLE


title: SK-MEL-30

description: SNP array data from the CCLE


title: SK-LU-1

description: SNP array data from the CCLE


title: SKM-1

description: SNP array data from the CCLE


title: SK-BR-3

description: SNP array data from the CCLE


title: SJSA-1

description: SNP array data from the CCLE

value: osteosarcoma


title: SK-CO-1

description: SNP array data from the CCLE


title: SJRH30

description: SNP array data from the CCLE

value: rhabdomyosarcoma


title: SK-ES-1

description: SNP array data from the CCLE


title: SIMA

description: SNP array data from the CCLE


title: SK-HEP-1

description: SNP array data from the CCLE


title: SH-SY5Y

description: SNP array data from the CCLE


title: SHP-77

description: SNP array data from the CCLE


title: SH-10-TC

description: SNP array data from the CCLE

value: stomach


title: SF126

description: SNP array data from the CCLE

value: astrocytoma


title: SF-295

description: SNP array data from the CCLE


title: SIG-M5

description: SNP array data from the CCLE


title: SCC-9

description: SNP array data from the CCLE


title: SEM

description: SNP array data from the CCLE


title: SCC-4

description: SNP array data from the CCLE


title: SH-4

description: SNP array data from the CCLE


title: SCLC-21H

description: SNP array data from the CCLE

value: lung


title: Set-2

description: SNP array data from the CCLE


title: S-117

description: SNP array data from the CCLE


title: SCC-25

description: SNP array data from the CCLE


title: SBC-5

description: SNP array data from the CCLE


title: RT112/84

description: SNP array data from the CCLE


title: RT-112

description: SNP array data from the CCLE


title: SCaBER

description: SNP array data from the CCLE


title: RS4;11

description: SNP array data from the CCLE


title: RPMI 6666

description: SNP array data from the CCLE


title: RPMI-7951

description: SNP array data from the CCLE


title: RL95-2

description: SNP array data from the CCLE

value: endometrium


title: RL

description: SNP array data from the CCLE


title: RVH-421

description: SNP array data from the CCLE


title: RPMI 8226

description: SNP array data from the CCLE


title: RKN

description: SNP array data from the CCLE


title: RI-1

description: SNP array data from the CCLE


title: RT4

description: SNP array data from the CCLE


title: RERF-LC-MS

description: SNP array data from the CCLE


title: SCC-15

description: SNP array data from the CCLE


title: RERF-LC-Ad2

description: SNP array data from the CCLE

value: adenocarcinoma


title: RERF-LC-Ad1

description: SNP array data from the CCLE


title: RH-41

description: SNP array data from the CCLE

value: alveolar


title: RKO

description: SNP array data from the CCLE


title: Reh

description: SNP array data from the CCLE


title: RERF-LC-KJ

description: SNP array data from the CCLE


title: RMG-I

description: SNP array data from the CCLE

value: ovary


title: RD-ES

description: SNP array data from the CCLE


title: RCM-1

description: SNP array data from the CCLE


title: RMUG-S

description: SNP array data from the CCLE


title: RERF-LC-Sq1

description: SNP array data from the CCLE


title: RH-30

description: SNP array data from the CCLE


title: RD

description: SNP array data from the CCLE

value: embryonal


title: Raji

description: SNP array data from the CCLE


title: RERF-LC-AI

description: SNP array data from the CCLE


title: RPMI-8402

description: SNP array data from the CCLE


title: REC-1

description: SNP array data from the CCLE


title: PLC/PRF/5

description: SNP array data from the CCLE

value: liver


title: PSN1

description: SNP array data from the CCLE

value: pancreas


title: RCH-ACV

description: SNP array data from the CCLE


title: PK-59

description: SNP array data from the CCLE

value: carcinoma


title: PE/CA-PJ49

description: SNP array data from the CCLE


title: PL-21

description: SNP array data from the CCLE


title: PE/CA-PJ34 (clone C12)

description: SNP array data from the CCLE


title: PE/CA-PJ15

description: SNP array data from the CCLE


title: PA-TU-8902

description: SNP array data from the CCLE


title: PF-382

description: SNP array data from the CCLE


title: Panc 08.13

description: SNP array data from the CCLE


title: PA-TU-8988T

description: SNP array data from the CCLE


title: PEER

description: SNP array data from the CCLE


title: Panc 10.05

description: SNP array data from the CCLE


title: PA-TU-8988S

description: SNP array data from the CCLE


title: PK-45H

description: SNP array data from the CCLE


title: PE/CA-PJ41 (clone D2)

description: SNP array data from the CCLE


title: Pfeiffer

description: SNP array data from the CCLE


title: PANC-1

description: SNP array data from the CCLE


title: Panc 05.04

description: SNP array data from the CCLE


title: PC-14

description: SNP array data from the CCLE


title: Panc 03.27

description: SNP array data from the CCLE


title: Panc 02.13

description: SNP array data from the CCLE


title: PK-1

description: SNP array data from the CCLE


title: PL45

description: SNP array data from the CCLE


title: PC-3

description: SNP array data from the CCLE

value: prostate


title: P3HR-1

description: SNP array data from the CCLE


title: Panc 04.03

description: SNP array data from the CCLE


title: Panc 02.03

description: SNP array data from the CCLE


title: OVKATE

description: SNP array data from the CCLE


title: OUMS-23

description: SNP array data from the CCLE


title: OE21

description: SNP array data from the CCLE

value: oesophagus


title: OPM-2

description: SNP array data from the CCLE


title: OV-90

description: SNP array data from the CCLE


title: OVSAHO

description: SNP array data from the CCLE


title: OVK18

description: SNP array data from the CCLE


title: OVMANA

description: SNP array data from the CCLE


title: OVCAR-8

description: SNP array data from the CCLE


title: OVISE

description: SNP array data from the CCLE


title: OVTOKO

description: SNP array data from the CCLE


title: OVCAR-4

description: SNP array data from the CCLE


title: OV56

description: SNP array data from the CCLE


title: P12-ICHIKAWA

description: SNP array data from the CCLE


title: ONS-76

description: SNP array data from the CCLE


title: OUMS-27

description: SNP array data from the CCLE

value: bone

value: chondrosarcoma


title: OV7

description: SNP array data from the CCLE


title: OE19

description: SNP array data from the CCLE


title: P31/FUJ

description: SNP array data from the CCLE


title: OCI-AML3

description: SNP array data from the CCLE


title: OE33

description: SNP array data from the CCLE

value: other

value: metaplasia


title: OCI-AML2

description: SNP array data from the CCLE


title: OCI-LY-19

description: SNP array data from the CCLE


title: OCI-AML5

description: SNP array data from the CCLE


title: OCI-M1

description: SNP array data from the CCLE


title: PCM6

description: SNP array data from the CCLE


title: OCI-LY3

description: SNP array data from the CCLE


title: RCC10RGB

description: SNP array data from the CCLE

value: kidney


title: OC 314

description: SNP array data from the CCLE

source_name: ICLC


title: OAW42

description: SNP array data from the CCLE


title: OC 316

description: SNP array data from the CCLE


title: NUGC-4

description: SNP array data from the CCLE

value: stomach


title: OAW28

description: SNP array data from the CCLE


title: NUGC-2

description: SNP array data from the CCLE


title: NMC-G1

description: SNP array data from the CCLE

value: glioma


title: NUGC-3

description: SNP array data from the CCLE


title: NH-6

description: SNP array data from the CCLE

value: neuroblastoma


title: NCI-N87

description: SNP array data from the CCLE


title: NCI-H810

description: SNP array data from the CCLE

value: lung


title: NOMO-1

description: SNP array data from the CCLE


title: NCI-H841

description: SNP array data from the CCLE


title: NU-DHL-1

description: SNP array data from the CCLE


title: NCI-H838

description: SNP array data from the CCLE


title: NIH:OVCAR-3

description: SNP array data from the CCLE


title: NCI-H889

description: SNP array data from the CCLE


title: NCO2

description: SNP array data from the CCLE


title: NU-DUL-1

description: SNP array data from the CCLE


title: NCI-H82

description: SNP array data from the CCLE


title: NCI-H727

description: SNP array data from the CCLE


title: NCI-H929

description: SNP array data from the CCLE


title: NCI-H69

description: SNP array data from the CCLE


title: NCI-H747

description: SNP array data from the CCLE

value: adenocarcinoma


title: NCI-H661

description: SNP array data from the CCLE


title: NCI-H854

description: SNP array data from the CCLE


title: QGP-1

description: SNP array data from the CCLE


title: NCI-H716

description: SNP array data from the CCLE


title: NCI-H660

description: SNP array data from the CCLE


title: NCI-H596

description: SNP array data from the CCLE


title: NCI-H647

description: SNP array data from the CCLE


title: NCI-H650

description: SNP array data from the CCLE


title: NCI-H524

description: SNP array data from the CCLE


title: NCI-H510

description: SNP array data from the CCLE


title: NCI-H446

description: SNP array data from the CCLE


title: NCI-H460

description: SNP array data from the CCLE


title: NCI-H520

description: SNP array data from the CCLE


title: NCI-H526

description: SNP array data from the CCLE


title: NCI-H522

description: SNP array data from the CCLE


title: NCI-H441

description: SNP array data from the CCLE


title: NCI-H508

description: SNP array data from the CCLE


title: NCI-H28

description: SNP array data from the CCLE

value: pleura

value: mesothelioma


title: NCI-H2452

description: SNP array data from the CCLE


title: NCI-H292

description: SNP array data from the CCLE


title: NCI-H2286

description: SNP array data from the CCLE


title: NCI-H2444

description: SNP array data from the CCLE


title: NCI-H2228

description: SNP array data from the CCLE


title: NCI-H2405

description: SNP array data from the CCLE


title: NCI-H2227

description: SNP array data from the CCLE


title: NCI-H226

description: SNP array data from the CCLE


title: NCI-H2291

description: SNP array data from the CCLE


title: NCI-H322

description: SNP array data from the CCLE


title: NCI-H2196

description: SNP array data from the CCLE


title: NCI-H23

description: SNP array data from the CCLE


title: NCI-H2172

description: SNP array data from the CCLE


title: NCI-H358

description: SNP array data from the CCLE


title: NCI-H2347

description: SNP array data from the CCLE


title: NCI-H2171

description: SNP array data from the CCLE


title: NCI-H2141

description: SNP array data from the CCLE


title: NCI-H2342

description: SNP array data from the CCLE


title: NCI-H2126

description: SNP array data from the CCLE


title: NCI-H2170

description: SNP array data from the CCLE


title: NCI-H2087

description: SNP array data from the CCLE


title: NCI-H2106

description: SNP array data from the CCLE


title: NCI-H209

description: SNP array data from the CCLE


title: NCI-H2073

description: SNP array data from the CCLE


title: NCI-H2110

description: SNP array data from the CCLE


title: NCI-H2081

description: SNP array data from the CCLE


title: NCI-H2009

description: SNP array data from the CCLE


title: NCI-H2030

description: SNP array data from the CCLE


title: NCI-H2066

description: SNP array data from the CCLE


title: NCI-H2023

description: SNP array data from the CCLE


title: NCI-H1963

description: SNP array data from the CCLE


title: NCI-H2029

description: SNP array data from the CCLE


title: NCI-H2122

description: SNP array data from the CCLE


title: NCI-H211

description: SNP array data from the CCLE


title: NCI-H196

description: SNP array data from the CCLE


title: NCI-H1944

description: SNP array data from the CCLE


title: NCI-H2052

description: SNP array data from the CCLE


title: NCI-H1975

description: SNP array data from the CCLE


title: NCI-H2085

description: SNP array data from the CCLE


title: NCI-H1915

description: SNP array data from the CCLE


title: NCI-H1930

description: SNP array data from the CCLE


title: NCI-H1793

description: SNP array data from the CCLE


title: NCI-H1836

description: SNP array data from the CCLE


title: NCI-H1734

description: SNP array data from the CCLE


title: NCI-H1876

description: SNP array data from the CCLE


title: NCI-H1792

description: SNP array data from the CCLE


title: NCI-H1755

description: SNP array data from the CCLE


title: NCI-H1781

description: SNP array data from the CCLE


title: NCI-H1869

description: SNP array data from the CCLE


title: NCI-H1838

description: SNP array data from the CCLE


title: NCI-H1693

description: SNP array data from the CCLE


title: NCI-H1703

description: SNP array data from the CCLE


title: NCI-H1694

description: SNP array data from the CCLE


title: NCI-H1623

description: SNP array data from the CCLE


title: NCI-H1618

description: SNP array data from the CCLE


title: NCI-H1563

description: SNP array data from the CCLE


title: NCI-H1568

description: SNP array data from the CCLE


title: NCI-H1666

description: SNP array data from the CCLE


title: NCI-H1573

description: SNP array data from the CCLE


title: NCI-H1648

description: SNP array data from the CCLE


title: NCI-H1385

description: SNP array data from the CCLE


title: NCI-H1581

description: SNP array data from the CCLE


title: NCI-H1435

description: SNP array data from the CCLE


title: NCI-H1373

description: SNP array data from the CCLE


title: NCI-H1341

description: SNP array data from the CCLE


title: NCI-H1355

description: SNP array data from the CCLE


title: NCI-H1437

description: SNP array data from the CCLE


title: NCI-H1436

description: SNP array data from the CCLE


title: NCI-H1299

description: SNP array data from the CCLE


title: NCI-H1395

description: SNP array data from the CCLE


title: NCI-H1184

description: SNP array data from the CCLE


title: NCI-H146

description: SNP array data from the CCLE


title: NB-4

description: SNP array data from the CCLE


title: NCI-H1339

description: SNP array data from the CCLE


title: NCC-StC-K140

description: SNP array data from the CCLE


title: NCI-H1092

description: SNP array data from the CCLE


title: NB-1

description: SNP array data from the CCLE


title: NCI-H1650

description: SNP array data from the CCLE


title: NCI-H1048

description: SNP array data from the CCLE


title: NCI-H1105

description: SNP array data from the CCLE


title: NCI-H1155

description: SNP array data from the CCLE


title: NCI-H1651

description: SNP array data from the CCLE


title: NALM-1

description: SNP array data from the CCLE


title: NALM-6

description: SNP array data from the CCLE


title: NAMALWA

description: SNP array data from the CCLE


title: NALM-19

description: SNP array data from the CCLE


title: MV-4-11

description: SNP array data from the CCLE


title: MSTO-211H

description: SNP array data from the CCLE


title: MUTZ-5

description: SNP array data from the CCLE


title: MPP 89

description: SNP array data from the CCLE


title: MONO-MAC-6

description: SNP array data from the CCLE


title: MONO-MAC-1

description: SNP array data from the CCLE


title: MOLT-16

description: SNP array data from the CCLE


title: MM1-S

description: SNP array data from the CCLE


title: MOR/CPR

description: SNP array data from the CCLE


title: MOLT-4

description: SNP array data from the CCLE


title: MJ

description: SNP array data from the CCLE


title: MOLM-16

description: SNP array data from the CCLE


title: MOLP-8

description: SNP array data from the CCLE


title: ML-1

description: SNP array data from the CCLE

value: thyroid


title: MIA PaCa-2

description: SNP array data from the CCLE

value: pancreas


title: MOLM-13

description: SNP array data from the CCLE


title: MOLM-6

description: SNP array data from the CCLE


title: MOLP-2

description: SNP array data from the CCLE


title: MHH-CALL-4

description: SNP array data from the CCLE


title: MOTN-1

description: SNP array data from the CCLE


title: MHH-ES-1

description: SNP array data from the CCLE


title: MHH-NB-11

description: SNP array data from the CCLE


title: MKN74

description: SNP array data from the CCLE

value: carcinoma


title: MOLT-13

description: SNP array data from the CCLE


title: MKN-45

description: SNP array data from the CCLE


title: MKN1

description: SNP array data from the CCLE


title: Mino

description: SNP array data from the CCLE


title: MHH-CALL-2

description: SNP array data from the CCLE


title: MFE-319

description: SNP array data from the CCLE

value: endometrium


title: MFE-280

description: SNP array data from the CCLE


title: MG-63

description: SNP array data from the CCLE

value: osteosarcoma


title: MeWo

description: SNP array data from the CCLE

value: skin


title: MEL-JUSO

description: SNP array data from the CCLE


title: MHH-CALL-3

description: SNP array data from the CCLE


title: MEL-HO

description: SNP array data from the CCLE


title: MEG-01

description: SNP array data from the CCLE


title: MEC-2

description: SNP array data from the CCLE


title: MDST8

description: SNP array data from the CCLE


title: MFE-296

description: SNP array data from the CCLE


title: MEC-1

description: SNP array data from the CCLE


title: MDA-MB-453

description: SNP array data from the CCLE

value: breast


title: MDA PCa 2b

description: SNP array data from the CCLE

value: prostate


title: MDA-MB-175-VII

description: SNP array data from the CCLE


title: ME-1

description: SNP array data from the CCLE


title: MDA-MB-231

description: SNP array data from the CCLE


title: MDA-MB-157

description: SNP array data from the CCLE


title: MDA-MB-435S

description: SNP array data from the CCLE


title: MDA-MB-415

description: SNP array data from the CCLE


title: MCAS

description: SNP array data from the CCLE

value: ovary


title: MCF7

description: SNP array data from the CCLE


title: M059K

description: SNP array data from the CCLE


title: MDA-MB-468

description: SNP array data from the CCLE


title: MDA-MB-134-VI

description: SNP array data from the CCLE


title: MDA-MB-361

description: SNP array data from the CCLE


title: LXF-289

description: SNP array data from the CCLE


title: M-07e

description: SNP array data from the CCLE


title: LU99

description: SNP array data from the CCLE


title: LU65

description: SNP array data from the CCLE


title: LUDLU-1

description: SNP array data from the CCLE


title: MDA-MB-436

description: SNP array data from the CCLE


title: LS513

description: SNP array data from the CCLE


title: LS1034

description: SNP array data from the CCLE


title: LS123

description: SNP array data from the CCLE


title: Malme-3M

description: SNP array data from the CCLE


title: MC116

description: SNP array data from the CCLE


title: LS411N

description: SNP array data from the CCLE


title: LS 180

description: SNP array data from the CCLE


title: LOX IMVI

description: SNP array data from the CCLE


title: LOU-NH91

description: SNP array data from the CCLE


title: LNCaP clone FGC

description: SNP array data from the CCLE


title: Loucy

description: SNP array data from the CCLE


title: LP-1

description: SNP array data from the CCLE


title: Li-7

description: SNP array data from the CCLE

value: liver


title: LN-229

description: SNP array data from the CCLE


title: LMSU

description: SNP array data from the CCLE

value: stomach


title: LN-18

description: SNP array data from the CCLE

value: glioma


title: LK-2

description: SNP array data from the CCLE


title: LoVo

description: SNP array data from the CCLE


title: LC-1/sq-SF

description: SNP array data from the CCLE


title: LCLC-103H

description: SNP array data from the CCLE


title: KYSE-510

description: SNP array data from the CCLE

value: oesophagus


title: LAMA-84

description: SNP array data from the CCLE


title: L-540

description: SNP array data from the CCLE


title: KYSE-450

description: SNP array data from the CCLE


title: LCLC-97TM1

description: SNP array data from the CCLE

value: lung


title: L-363

description: SNP array data from the CCLE


title: L-1236

description: SNP array data from the CCLE


title: KYSE-150

description: SNP array data from the CCLE


title: L3.3

description: SNP array data from the CCLE


title: KYSE-180

description: SNP array data from the CCLE


title: KYSE-520

description: SNP array data from the CCLE


title: L-428

description: SNP array data from the CCLE


title: KYSE-270

description: SNP array data from the CCLE


title: KYSE-30

description: SNP array data from the CCLE


title: KU-19-19

description: SNP array data from the CCLE


title: KYM-1

description: SNP array data from the CCLE

value: rhabdomyosarcoma


title: KU812

description: SNP array data from the CCLE


title: KYO-1

description: SNP array data from the CCLE


title: KURAMOCHI

description: SNP array data from the CCLE


title: KYSE-70

description: SNP array data from the CCLE


title: KYSE-410

description: SNP array data from the CCLE


title: KP-N-RT-BM-1

description: SNP array data from the CCLE

value: neuroblastoma


title: KPL-1

description: SNP array data from the CCLE


title: KP-N-SI9s

description: SNP array data from the CCLE


title: KP-N-YN

description: SNP array data from the CCLE


title: KP4

description: SNP array data from the CCLE


title: KYSE-140

description: SNP array data from the CCLE


title: KP-2

description: SNP array data from the CCLE


title: KMS-28BM

description: SNP array data from the CCLE


title: KP-3

description: SNP array data from the CCLE


title: KOPN-8

description: SNP array data from the CCLE


title: KNS-62

description: SNP array data from the CCLE


title: KMS-27

description: SNP array data from the CCLE


title: KNS-60

description: SNP array data from the CCLE


title: KO52

description: SNP array data from the CCLE


title: KNS-81

description: SNP array data from the CCLE


title: KMS-18

description: SNP array data from the CCLE


title: KMS-12-BM

description: SNP array data from the CCLE


title: KMRC-3

description: SNP array data from the CCLE

value: kidney


title: KMS-21BM

description: SNP array data from the CCLE


title: KMS-26

description: SNP array data from the CCLE


title: KMS-20

description: SNP array data from the CCLE


title: KMS-11

description: SNP array data from the CCLE


title: KMRC-1

description: SNP array data from the CCLE


title: KMRC-20

description: SNP array data from the CCLE


title: KNS-42

description: SNP array data from the CCLE


title: KS-1

description: SNP array data from the CCLE


title: KMRC-2

description: SNP array data from the CCLE


title: KMS-34

description: SNP array data from the CCLE


title: KM-H2

description: SNP array data from the CCLE


title: KLE

description: SNP array data from the CCLE

value: adenocarcinoma


title: KM12

description: SNP array data from the CCLE


title: KLM-1

description: SNP array data from the CCLE

value: pancreas


title: Ki-JK

description: SNP array data from the CCLE


title: KMM-1

description: SNP array data from the CCLE


title: KHM-1B

description: SNP array data from the CCLE


title: KE-39

description: SNP array data from the CCLE

value: carcinoma


title: KELLY

description: SNP array data from the CCLE


title: KE-37

description: SNP array data from the CCLE


title: KCI-MOH1

description: SNP array data from the CCLE


title: KE-97

description: SNP array data from the CCLE


title: KMBC-2

description: SNP array data from the CCLE


title: KCL-22

description: SNP array data from the CCLE


title: KARPAS-620

description: SNP array data from the CCLE


title: KARPAS-299

description: SNP array data from the CCLE


title: KASUMI-1

description: SNP array data from the CCLE


title: KG-1-C

description: SNP array data from the CCLE


title: KASUMI-2

description: SNP array data from the CCLE


title: KG-1

description: SNP array data from the CCLE


title: JURL-MK1

description: SNP array data from the CCLE


title: K029AX

description: SNP array data from the CCLE


title: JVM-2

description: SNP array data from the CCLE


title: JMSU-1

description: SNP array data from the CCLE


title: JVM-3

description: SNP array data from the CCLE


title: K-562

description: SNP array data from the CCLE


title: KALS-1

description: SNP array data from the CCLE


title: JURKAT

description: SNP array data from the CCLE


title: Kasumi-6

description: SNP array data from the CCLE


title: JHUEM-7

description: SNP array data from the CCLE

value: endometrium


title: JHUEM-2

description: SNP array data from the CCLE


title: JHH-7

description: SNP array data from the CCLE


title: JM1

description: SNP array data from the CCLE


title: JHOM-2B

description: SNP array data from the CCLE


title: JHUEM-1

description: SNP array data from the CCLE


title: JK-1

description: SNP array data from the CCLE


title: JL-1

description: SNP array data from the CCLE

value: pleura

value: mesothelioma


title: JHOS-4

description: SNP array data from the CCLE


title: JHUEM-3

description: SNP array data from the CCLE


title: JHOC-5

description: SNP array data from the CCLE


title: JHOM-1

description: SNP array data from the CCLE


title: JIMT-1

description: SNP array data from the CCLE

value: breast


title: JHH-5

description: SNP array data from the CCLE


title: JHH-6

description: SNP array data from the CCLE


title: JHH-4

description: SNP array data from the CCLE


title: JHH-1

description: SNP array data from the CCLE


title: JeKo-1

description: SNP array data from the CCLE


title: JHOS-2

description: SNP array data from the CCLE


title: IGROV1

description: SNP array data from the CCLE


title: IMR-32

description: SNP array data from the CCLE


title: JHH-2

description: SNP array data from the CCLE


title: IPC-298

description: SNP array data from the CCLE

value: skin


title: J82

description: SNP array data from the CCLE


title: IGR-37

description: SNP array data from the CCLE


title: IST-MES1

description: SNP array data from the CCLE


title: IM95

description: SNP array data from the CCLE


title: IGR-39

description: SNP array data from the CCLE


title: IST-MES2

description: SNP array data from the CCLE


title: IGR-1

description: SNP array data from the CCLE


title: Ishikawa (Heraklio) 02 ER-

description: SNP array data from the CCLE


title: IA-LM

description: SNP array data from the CCLE


title: HUP-T3

description: SNP array data from the CCLE


title: HuNS1

description: SNP array data from the CCLE


title: Hs 944.T

description: SNP array data from the CCLE


title: HuT 78

description: SNP array data from the CCLE


title: HuT 102

description: SNP array data from the CCLE


title: HSC-2

description: SNP array data from the CCLE


title: HuH28

description: SNP array data from the CCLE


title: HuG1-N

description: SNP array data from the CCLE


title: HuTu 80

description: SNP array data from the CCLE


title: huH-1

description: SNP array data from the CCLE


title: HT55

description: SNP array data from the CCLE


title: Hs 936.T

description: SNP array data from the CCLE


title: HT-1197

description: SNP array data from the CCLE


title: HuH-7

description: SNP array data from the CCLE


title: HTK-

description: SNP array data from the CCLE


title: HT115

description: SNP array data from the CCLE


title: HuH-6

description: SNP array data from the CCLE

value: other

value: hepatoblastoma


title: Hs 934.T

description: SNP array data from the CCLE


title: HT-29

description: SNP array data from the CCLE


title: HT-1376

description: SNP array data from the CCLE


title: Hs 939.T

description: SNP array data from the CCLE


title: HUP-T4

description: SNP array data from the CCLE


title: HuCCT1

description: SNP array data from the CCLE


title: HT-144

description: SNP array data from the CCLE


title: Hs 940.T

description: SNP array data from the CCLE


title: HSC-3

description: SNP array data from the CCLE


title: HT

description: SNP array data from the CCLE


title: HT-1080

description: SNP array data from the CCLE

value: fibrosarcoma


title: HSC-4

description: SNP array data from the CCLE


title: Hs 895.T

description: SNP array data from the CCLE


title: Hs 888.T

description: SNP array data from the CCLE

value: bone

value: osteosarcoma


title: Hs 870.T

description: SNP array data from the CCLE


title: Hs 863.T

description: SNP array data from the CCLE


title: Hs 852.T

description: SNP array data from the CCLE


title: Hs 688(A).T

description: SNP array data from the CCLE


title: Hs 839.T

description: SNP array data from the CCLE


title: Hs 695T

description: SNP array data from the CCLE


title: Hs 751.T

description: SNP array data from the CCLE


title: Hs 766T

description: SNP array data from the CCLE


title: Hs 737.T

description: SNP array data from the CCLE


title: Hs 698.T

description: SNP array data from the CCLE