title: 22_7_CD4+ 0h

description: replicate 7


title: 38_4_expTreg

status: Public on Aug 16 2011

type: RNA

city: Bonn

first: Joachim

last: Schultze

state: NRW

address: Carl-Troll-Strasse 31

department: Genomics and Immunoregulation

country: Germany

institute: LIMES (Life and Medical Sciences Center Genomics and Immunoregulation)

description: replicate 4

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were normalised using quantile normalisation in R

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: peripheral blood

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

growth_protocol: Freshly isolated CD4+CD25low/intCD127+ T cells; CD4+ T cells were cultured for 12 hrs followed by 8 hrs treatment as indicated. CD4+CD25+ Treg cells were expanded in cell culture.

extract_protocol: RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with NanoDrop ThermoScientific.

treatment_protocol: Immediately after isolation or after described treatment, cells were lysed in Trizol reagent.

tag: cell type

value: expanded CD4+CD25+ Treg

tag: treatment protocol

value: expanded in cell culture


title: 22_6_CD4+ 0h

description: replicate 6

growth_protocol: Freshly isolated CD4+ T cells as well as CD4+ T cells further separated into CD25 negativ and positiv subpopulation. Furthermore, CD4+CD25+ Treg cells were expanded in cell culture.

treatment_protocol: Immediately after isolation, cells were lysed in Trizol reagent. Expanded Treg cells were CD3CD28 activated for a short time period and then lysed in Trizol reagent.

value: CD4+ T cell


title: 4_4_IL10

description: replicate 4

source_name: buffy coats of peripheral blood

growth_protocol: freshly isolated CD4+ T cells were treated either immediately after isolation or after 12 hrs of cell culture with the indicated conditions

treatment_protocol: immediately after described treatment, cells were lysed in Trizol reagent.

value: 8 hrs culture with IL10


title: 16_4_CD4 T cells

description: replicate 4

value: 8 hrs culture


title: 13_4_20h+1ng TGF

description: replicate 4

source_name: CD4+ T cell (isolated from peripheral blood)

growth_protocol: freshly isolated CD4+ T cells, CD4+CD25- as well as CD4+CD25+ Treg cells were treated as indicated.

value: activated via TGFb1, cultured for 20 hrs


title: 17_4_Tconv_12h

description: replicate 4

value: 12 hrs culture


title: 22_4_CD4+ 0h

description: replicate 4


title: 7_4_CTLA4

description: replicate 4

value: activated via 8 hrs CD3CD28 + CTLA4


title: 5_4_PGE2

description: replicate 4

growth_protocol: Freshly isolated CD4+ T cells and CD4+ T cells separated into CD25 negativ and positiv subpopulation activated with variuos conditions

treatment_protocol: Immediately after isolation, cells were lysed in Trizol reagent or activated with CD3CD28 and either TGFb1 or PGE2

value: activated via CD3CD28 and treated with PGE2


title: 21_2_Tconv 18+8hrs

description: replicate 2

growth_protocol: CD4+ T cells were cultured for 18 hrs followed by 1 hrs treatment as indicated.

value: 18 hrs culture, then 8 hrs culture


title: ir-lecRK1_1h_Oselicitation_rep2

status: Public on Nov 25 2011

city: Jena

first: Klaus

last: Gase

address: Hans-Knoell-Strasse 8

department: Molecular Ecology

institute: Max-Planck-Institute for Chemical Ecology

description: Gene expression after 1hr of elicitation with oral secretions from Manduca sexta larvae

hyb_protocol: 1.5 ug of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 250 ml containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 250 ml of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to Agilent platform GPL13527 for 17 hours at 65°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed at room temperature with GE Wash Buffer 1 (Agilent) and at 37°C with GE Wash buffer 2 (Agilent) as outlined in the One-Color Microarray-Based Gene Expression Analysis manual (Agilent).

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2565BA) using one color scan setting for 1x44k array slides (Scan Area 61x21.6 mm, Scan resolution 10um, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: Data was acquired with the Agilent Scan Control software (version A.7.0.1 for the B scanner) and extracted using the Agilent Feature Extraction software (version 9.5). Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded. 75 percentile normalization was performed for all probes including all controls and replicate probes. Controls were removed from the list. All replicated probes were averaged.

organism: Nicotiana attenuata

source_name: ir-lecRK1 leaves_1hr after oral secretion elicitation

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.5 ug RNA using the Quick Amp labeling kit (Agilent, Santa Clara, CA) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Hilden, Germany).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

growth_protocol: Seeds from N. attenuata wild type and ir-lecRK1 plants were grown in the glasshouse under high-pressure sodium lamps (200-300 µmol s-1 m-2 light) with a day/night cycle of 16 h(26-28°C)/8 h(22-24°C) and 45 to 55% humidity.

extract_protocol: Total RNA was extracted from leaves using the Plant RNeasy kit (Qiagen, Hilden, Germany) and its quality checked by spectrophotometry (NanoDrop, Wilmington, DE). Genomic DNA was removed by DNAse treatment following commercial instructions (Turbo DNase; Ambion, Europe), RNA was cleaned up with RNeasy MinElute columns (Qiagen) and the RNA quality was checked with the RNA 6000 Nano kit (Agilent, Santa Clara, CA) using an Agilent 2100 Bioanalyzer (Agilent).

treatment_protocol: For elicitation treatment, leaves were wounded by rolling a fabric-pattern wheel three times on each side of the midvein and the wounds were supplemented with 20 microliters of Manduca sexta oral secretions diluted 1/5 (v/v) in water.

tag: genotype/variation

tag: tissue

value: leaves


title: 8_4_CD3

description: replicate 4

source_name: activated CD4+ T cell (isolated from buffy coats of peripheral blood)

growth_protocol: freshly isolated CD4+ T cells and CD4+ T cells separated into CD25 negativ and positiv subpopulation activated with variuos conditions

treatment_protocol: immediately after isolation, cells were lysed in Trizol reagent or activated with CD3, CD3CD28, CD3IL2

value: activated via CD3


title: 2_4_TGF_1

description: replicate 4

value: activated via CD3CD28 and treated with TGFb1


title: 21_1_Tconv 18+8hrs

description: replicate 1


title: 1_4_CD3CD28

description: replicate 4

value: activated via CD3CD28


title: 19_2_Tconv 18+1hrs

description: replicate 2

value: 18 hrs culture, then 1 hrs culture


title: 3_4_VEGF

description: replicate 4

value: 8 hrs CD3CD28 activation + VEGF


title: 21_3_Tconv 18+8hrs

description: replicate 3


title: 19_3_Tconv 18+1hrs

description: replicate 3


title: 6_4_PD1

description: replicate 4

growth_protocol: cultured for 12 hrs followed by 8 hrs treatment as indicated. CD4+CD25+ Treg cells were expanded in cell culture.

value: 8 hrs CD3CD28 activation + PD1


title: 10_3_Tconv 18+1hrs TGF

description: replicate 3

value: 18 hrs culture, then 1 hrs TGFb1


title: 10_1_Tconv 18+1hrs TGF

description: replicate 1


title: 31_3_CD4+CD25+ Treg CLL

status: Public on Aug 14 2011

description: replicate 3

source_name: CD4+CD25+ Treg (isolated from peripheral blood)

growth_protocol: freshly isolated CD4+ T cells, separated into CD25 negativ and positiv subpopulation

treatment_protocol: immediately after isolation, cells were lysed in Trizol reagent or activated with CD3CD28

tag: disease state

value: B-cell chronic lymphocytic leukemia (B-CLL)

tag: cell type subpopulation

value: CD25+ Treg


title: 15_3_Tconv + TGF

description: replicate 3

source_name: CD4+ Tconv + TGF (isolated from peripheral blood)

growth_protocol: CD4+ T cells were cultured for 18 hrs as indicated.

value: CD4+ T cell

value: 18 hrs culture


title: 10_2_Tconv 18+1hrs TGF

description: replicate 2


title: 37_3_aCD4+CD25+ Treg CLL

description: replicate 3

source_name: activated CD4+CD25+ Treg (isolated from peripheral blood)

treatment_protocol: immediately after isolation, cells were lysed in Trizol reagent or activated with CD3IL2

value: activated via CD3IL2


title: 31_1_CD4+CD25+ Treg CLL

description: replicate 1


title: 37_2_aCD4+CD25+ Treg CLL

description: replicate 2


title: 37_1_aCD4+CD25+ Treg CLL

description: replicate 1


title: 19_1_Tconv 18+1hrs

description: replicate 1


title: 36_3_aCD4+CD25+ Treg

description: replicate 3


title: 15_1_Tconv + TGF

description: replicate 1


title: 31_2_CD4+CD25+ Treg CLL

description: replicate 2


title: 15_2_Tconv + TGF

description: replicate 2


title: 40_1_expTreg + CD3/28

description: replicate 1

value: expanded CD4+CD25+ Treg

value: CD3CD28 short-time activation


title: 27_2_CD4+CD25- Tconv 0h

description: replicate 2

value: CD4+CD25- non-Treg


title: 36_2_aCD4+CD25+ Treg

description: replicate 2


title: 27_1_CD4+CD25- Tconv 0h

description: replicate 1


title: 40_3_expTreg + CD3/28

description: replicate 3


title: 34_2_CD4+CD25+ 0h Treg

description: replicate 2

value: CD4+CD25+ Treg


title: 36_1_aCD4+CD25+ Treg

description: replicate 1


title: 22_2_CD4+ 0h

description: replicate 2


title: 31_4_CD4+CD25+ Treg CLL

description: replicate 4


title: WT_1h_Oselicitation_rep2

source_name: wild type leaves_1h after oral secretion elicitation

value: wild type

value: leaves


title: 22_1_CD4+ 0h

description: replicate 1


title: 40_2_expTreg + CD3/28

description: replicate 2


title: 34_1_CD4+CD25+ 0h Treg

description: replicate 1


title: 23_3_CD4+CD25- Tconv

description: replicate 3

treatment_protocol: immediately after isolation, cells were lysed in Trizol reagent


title: 32_1_CD4+CD25+ Treg

description: replicate 1


title: 32_3_CD4+CD25+ Treg

description: replicate 3


title: PGCs (E9.5), PCR amplified, biological rep2

status: Public on Aug 05 2011

city: Nara

first: Kazuki

last: Kurimoto

address: 840 Shijo-Cho, Kashihara

department: School of medicine

country: Japan

institute: Nara Medical University

hyb_protocol: Hybridization was performed according to the standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2004, Affymetrix: Eukaryotic Target Hybridization)

scan_protocol: The microarray image data were processed with the GeneChip Scanner 3000 (Affymetrix)

data_processing: CEL data were generated by GeneChip Operating Software and then subjected to the dCHIP software.  Data were normalized together with the default settings.  The Model-Based Expression Indices (MBEI) were calculated using the PM/MM difference mode with log-2 transformation of signal intensity and truncation of low values to zero.

organism: Mus musculus

source_name: PGCs, at embryonic day 9.5

label_protocol: Biotinylated cRNA were prepared from total RNA according to the standard Affymetrix protocol (Affymetrix GeneChip Expression Analysis Technical Manual, 2004, Affymetrix: Eukaryotic One-Cycle Target Labeling Assay)

growth_protocol: ES cells were maintained with 2i+LIF, feeder free condition.  EpiLCs were induced from the ES cells.  PGCLCs were induced from day 2 EpiLCs.  EpiSCs were derived from epiblast (embryonic day 5.75).  For detail,  see Hayashi et al., Cell 2011.

extract_protocol: total RNA was extracted using Qiagen RNeasy according to manufacturer's instruction

tag: strain

value: primordial germ cell (PGC), at embryonic day 9.5

tag: amplification

value: 22-cycle PCR from 5ng total RNA (equivalent to 500 cells)


title: 22_3_CD4+ 0h

description: replicate 3


title: PGCs (E9.5), PCR amplified, biological rep1


title: WT_control_1

status: Public on May 25 2011

city: Indiananpolis

first: William

middle: J

last: Sullivan

state: IN

address: 635 Barnhill Dr.

department: Pharmacology & Toxicology

country: USA

institute: Indiana University

description: Gene expression data from T.Gondii

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 17 hr at 45C on Toxoplasma Gondii arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station.

scan_protocol: GeneChips were scanned using the standard Affymetrix protocol.

data_processing: The data were analyzed with Affymetrix Gene Chip Operating Software (GCOS) using the MAS 5.0 algorithm using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1000.

organism: Toxoplasma gondii

label_protocol: Affymetrix standard 3' IVT protocol using 2ug of total RNA.

growth_protocol: Toxoplasma tachyzoites (wild-type (WT) RH and deltaGCN5-A lines) were cultured in primary human foreskin fibroblasts (HFF) using Dulbecco’s Modified Eagle’s Medium supplemented with 1.0% fetal bovine serum (Invitrogen).  Parasites were grown in a humidified CO2 (5%) incubator at 37°C.  Cultures were confirmed to be free of Mycoplasma contamination by MycoAlertTM Assay (Cambrex Bio Science).  Parasites were harvested immediately following lysis of host cell monolayers and purified by filtration through a 3.0 micron filter.

extract_protocol: Total RNA was isolated from freshly lysed, filter-purified parasites using an RNeasy Mini Kit according to the manufacturer’s instructions (Qiagen). To minimize genomic DNA contamination, additional treatment with DNase was performed.

treatment_protocol: Tachyzoites were released from HFF monolayers using a 25 gauge syringe needle, and filtered to remove the host cell debris was spun out at 500 ×g for 5 min. Extracellular parasites were resuspended at a concentration of 105 parasites/ml in DMEM or alkaline medium (pH 8.2, adjusted with NaOH).  This suspension was incubated at 37°C in 5% CO2 for 30 min, and then 103 parasites were inoculated onto HFF monolayers in 24-well plates. After 5 day incubation at 37°C, the infected monolayers harvested for RNA isolation.

tag: genotype

value: WT

tag: treatment

value: control


title: GCN5A-KO_stress_4

description: Gene expression data from T.Gondii

value: GCN5A KO

value: alkaline stress


title: epiblast, PCR amplified, biological rep2

source_name: epiblast

value: epiblast


title: GCN5A-KO_stress_6

description: Gene expression data from T.Gondii


title: 23_1_CD4+CD25- Tconv

description: replicate 1


title: 23_2_CD4+CD25- Tconv

description: replicate 2


title: WT_control_2

description: Gene expression data from T.Gondii


title: WT_control_3

description: Gene expression data from T.Gondii


title: GCN5A-KO_control_6

description: Gene expression data from T.Gondii


title: WT_control_5

description: Gene expression data from T.Gondii


title: GCN5A-KO_stress_1

description: Gene expression data from T.Gondii


title: WT_stress_4

description: Gene expression data from T.Gondii


title: 32_2_CD4+CD25+ Treg

description: replicate 2


title: GCN5A-KO_stress_2

description: Gene expression data from T.Gondii


title: WT_stress_2

description: Gene expression data from T.Gondii


title: GCN5A-KO_control_5

description: Gene expression data from T.Gondii


title: GCN5A-KO_control_3

description: Gene expression data from T.Gondii


title: WT_stress_6

description: Gene expression data from T.Gondii


title: WT_stress_5

description: Gene expression data from T.Gondii


title: epiblast, PCR amplified, biological rep1


title: Healthy-control-normal9

status: Public on Jan 10 2011

type: genomic

city: Seu-gu

first: Jaeku

last: Kang

state: Daejeon

address: 685, Gasuwon-dong

department: Department of Pharmacology

country: South Korea

institute: College of Medicine, Konyang University

hyb_protocol: DNA samples labelled with fluorochromes were mixed with Cot-1 DNA(Invitrogen), denatured at 72°C for 10 min, and incubated at 37°C for 1 h. The hybridization mixture was then introduced into the hybridization chamber of the microarray slide, which was incubated at 37°C for 48 h.

scan_protocol: scanned using GenePix4200A (Axon Instrument,Foster City, CA, USA) accoroding to the protocol.

data_processing: The log-transformed fluorescent ratios were calculated as the background-subtracted median intensity values. These ratios were used to perform Lowess normalization before copy number calculations. The purpose of normalization is to adjust for effects that arise from variations between the red and green dyes or the scanner setting of the two fluorescent dyes.

molecule: genomic DNA

source_name: peripheral blood lymphocytes of healthy controls

label_protocol: test DNA and reference DNA were labelled with Cy3- or Cy5-labelled dCTP (NEL; PerkinElmer, Boston, MA, USA), using the BioPrime® Array CGH Genomic Labeling System (Invitrogen, Carlsbad, CA, USA).

extract_protocol: Genomic DNA (gDNA) of peripheral blood lymphocytes (PBLs) was extracted by G-spinTM for Blood (iNtRON biotechnology, Korea) according to the manufacturer’s manual.

tag: Sex

value: male

tag: pack-years

source_name: reference male sample

extract_protocol: refer to vendor

tag: vendor

value: Coriell GM10851


title: Healthy-control-normal8


title: Healthy-control-normal10


title: Healthy-control-normal7


title: Healthy-control-normal5


title: Healthy-control-normal6


title: Healthy-control-normal3


title: Patient-SC-cs1

source_name: peripheral blood lymphocytes of the lung cancer patient

value: squamous cell carcinoma


title: Patient-SC-cs3


title: Patient-SC-cs4


title: Healthy-control-normal2


title: Patient-SC-cs2


title: Patient-AD-ca1

value: adenocarcinoma


title: Healthy-control-normal1


title: Patient-AD-ca4


title: GCN5A-KO_control_2

description: Gene expression data from T.Gondii


title: Patient-SC-cs5


title: Patient-AD-ca2


title: Patient-AD-ca3


title: RH.cont.3.10709

status: Public on Nov 06 2010

city: Moscow

first: Mark

last: Lavine

address: Department MMBB

institute: University of Idaho

description: Gene expression data from intracellular parasites under control conditions

hyb_protocol: Fragmented cRNA (15 μg) was hybridized to the custom Toxoplasma gondii Affymetrix microarray (http://roos374compbio2.bio.upenn.edu/~abahl/Array-Tutorial.html) according to standard hybridization protocols.

scan_protocol: The distribution of fluorescent material on the array was determined with the confocal laser scanner (GeneChip Scanner 3000; Affymetrix).

data_processing: CEL files containing raw data were processed and analyzed using R software (R Foundation for Statistical Computing) and Bioconductor packages.

source_name: Intracellular toxoplasma 24 hrs post-invasion

label_protocol: Affymetrix standard protocol.

growth_protocol: Parasites were maintained by passage through human foreskin fibroblasts (HFFs) at 37°C and 5% CO2.  Normal culture medium was Dubelco’s Modified Eagle Medium (DMEM) supplemented with 10% FBS, 2mM L-glutamine and 100 units penicillin/100 μg streptomycin per ml.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.  A total of 5 μg starting RNA was used to produce cRNA using the Affymetrix One-Cycle Kit (Affymetrix, Santa Clara, CA).

treatment_protocol: Culture medium was removed and parasites were directly lysed in Trizol.

value: RHΔhpt+GFP+βGal


title: RH.cont.1.10709


title: RH.cont.2.10709


title: RH.mon.1.10709

description: Gene expression data from intracellular parasites after 24hrs exposure to 2.5ng/ml monensin in culture medium.

source_name: Intracellular toxoplasma 48 hrs post-invasion, 24hrs post monensin exposure


title: RH.mon.2.10709


title: RH.mon.3.10709


title: Healthy-control-normal4


title: B7 T, biological rep4

status: Public on Jul 27 2010

city: Burlington

first: Mariana

last: Matrajt

address: 95 Carrigan Drive

institute: University of Vermont

hyb_protocol: GeneChip hybridization mixes were prepared using 4ug of the biotin-labeled fragmented cDNA and hybridized to the  ToxoGeneChip  array as per manufacturer’s recommendations for 16 hr at 45C at 60 rpm, double stained with streptavidin-PE using the Affymetrix 450 fluidics station.

scan_protocol: GeneChips were scanned with the Affymetrix  3000-G7 scanner.

data_processing: Raw GeneChip data includes a collection of images, one for each probe and chip.  Each image is summarized by Affymetrix GCOS software using one probe intensity (in CEL files, one per chip). We calculated a summary measure of expression, for each probe set, using the Robust Multichip Average (RMA) method using R and BioConductor tools (aroma.affymetrix package of Bengtesson).

source_name: Mutant B7, tachyzoites

label_protocol: RNA amplification, fragmentation, and labeling were performed using the Ovation V2 and Encore reagents by NuGEN technologies.

growth_protocol: T. gondii tachyzoites were maintained by serial passage in primary cultures of Human foreskin fibroblast (HFF) cells. Parasites were induced to differentiate into bradyzoites in low [CO2], resulting in pyrimidine starvation. CO2 depletion was accomplished by inoculating tachyzoites in host cells in minimal essential medium without NaHCO3 but containing 25 mM HEPES.

extract_protocol: Total RNA was extracted with the Qiagen kit  according to the manufacturer's instructions.

value: RH strain


title: B7 11ec, biological rep2

source_name: Mutant B7, 11h post egress


title: 13P 11ec, biological rep2

source_name: Mutant 13P, 11h post egress


title: B7 T, biological rep5


title: 13P 11ec, biological rep1


title: Patient-AD-ca5


title: B7 11ec, biological rep1


title: 13P T, biological rep5

source_name: Mutant 13P, tachyzoites


title: WT 11ec, biological rep3

source_name: extracellular tachyzoites, 11h post egress


title: WT 11ec, biological rep4


title: B48

source_name: bradyzoites, 48h of induction


title: B36

source_name: bradyzoites, 36h of induction


title: B24

source_name: bradyzoites, 24h of induction


title: WT 11ec, biological rep2


title: 13P T, biological rep4


title: P11 B, biological rep2

source_name: Mutant P11, bradyzoites


title: WT 11ec, biological rep1


title: 7K T, biological rep3

source_name: Mutant 7K, tachyzoites


title: 7K B, biological rep2

source_name: Mutant 7K, bradyzoites


title: 7K T, biological rep1


title: P11 T, biological rep3

source_name: Mutant P11, tachyzoites


title: P11 B, biological rep3


title: 7K T, biological rep2


title: P11 T, biological rep1


title: 7K B, biological rep3


title: 7K B, biological rep1


title: P11 B, biological rep1


title: P11 T, biological rep2


title: 11K T, biological rep2

source_name: Mutant 11K, tachyzoites


title: 11K T, biological rep1


title: 11K T, biological rep3


title: 11P T, biological rep1

source_name: Mutant 11P, tachyzoites


title: 11K B, biological rep1

source_name: Mutant 11K, bradyzoites


title: 11P B, biological rep3

source_name: Mutant 11P, bradyzoites


title: 11K B, biological rep3


title: 11P B, biological rep2


title: 11P T, biological rep3


title: 11K B, biological rep2


title: B7 T, biological rep3


title: 11P B, biological rep1


title: B7 B, biological rep3

source_name: Mutant B7, bradyzoites


title: 13P T, biological rep3


title: B7 T, biological rep1

source_name: Mutant B7, tachyzoites


title: B7 B, biological rep1


title: 11P T, biological rep2


title: B7 B, biological rep2


title: 13P T, biological rep2


title: 13P T, biological rep1


title: 12K T, biological rep2

source_name: Mutant 12K, tachyzoites


title: 12K T, biological rep3


title: 13P B, biological rep1

source_name: Mutant 13P, bradyzoites


title: 13P B, biological rep2


title: 13P B, biological rep3


title: B7 T, biological rep2


title: 12K T, biological rep1


title: B72, biological rep3

source_name: bradyzoites, 72h of induction


title: IT, biological rep3

source_name: intracellular tachyzoites, 24h post-invasion


title: B72, biological rep4


title: IT, biological rep1


title: B72, biological rep1


title: B72, biological rep2


title: IT, biological rep4


title: ET, biological rep5

source_name: extracellular tachyzoites freshly lysed


title: 12K B, biological rep1

source_name: Mutant 12K, bradyzoites


title: IT, biological rep2


title: ET, biological rep4


title: B72, biological rep5


title: 12K B, biological rep2


title: ET, biological rep3


title: 12K B, biological rep3


title: ET, biological rep2


title: ET, biological rep1


title: D2.12h + 8h_10ng/mlTGF+2560nM.LY

status: Public on Jul 20 2010

description: treatment 3

source_name: buffy coats of peripheral blood

growth_protocol: freshly isolated CD4+ T cells

treatment_protocol: CD4+ T cells were serum-deprived for 12 hours followed by 8 hours incubation with the indicated compounds

value: CD4+ T cells


title: D4.12h + 8h_CD3/CD28+10ng/mlTGF

description: treatment 5


title: D3.12h + 8h_CD3/CD28+10ng/mlTGF

description: treatment 5


title: D4.12h + 8h_CD3/CD28

description: treatment 4


title: D4.12h + 8h_10ng/mlTGF

description: treatment 2


title: D1.12h + 8h_10ng/mlTGF+2560nM.LY

description: treatment 3


title: D2.12h + 8h_CD3/CD28+10ng/mlTGF+2560nM.LY

description: treatment 6


title: D1.12h + 8h_10ng/mlTGF

description: treatment 2


title: D2.12h + 8h_CD3/CD28+10ng/mlTGF

description: treatment 5


title: D1.12h + 8h_CD3/CD28+10ng/mlTGF+2560nM.LY

description: treatment 6


title: D2.12h + 8h_CD3/CD28

description: treatment 4


title: D2.12h + 8h

description: treatment 1


title: D3.12h + 8h_10ng/mlTGF+2560nM.LY

description: treatment 3


title: D2.12h + 8h_10ng/mlTGF

description: treatment 2


title: D1.12h + 8h_CD3/CD28+10ng/mlTGF

description: treatment 5


title: D3.12h + 8h_CD3/CD28+10ng/mlTGF+2560nM.LY

description: treatment 6


title: glioma 259

status: Public on Apr 26 2010

city: Rotterdam

first: Pim

last: French

address: Dr Molewaterplein 50

department: Neurology

country: Netherlands

institute: Erasmus MC

description: Gene expression analysis.

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the GeneChip Scanner 3000 7G.

data_processing: Expression levels of 17,527 genes were extracted from Affymetrix HU133 Plus 2.0 arrays using updated array annotation (Dai et al., 2005) based on reorganizing probes to gene specific probe sets, excluding inaccurate or wrongly annotated probes.

source_name: brain tissue, glioma

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

value: brain

tag: gender

value: Male

tag: histology

value: OD (grade III)

tag: age at diagnosis


title: D4.12h + 8h_10ng/mlTGF+2560nM.LY

description: treatment 3


title: glioma 262

description: Gene expression analysis.

value: Female


title: D3.12h + 8h_CD3/CD28

description: treatment 4


title: D3.12h + 8h_10ng/mlTGF

description: treatment 2


title: D3.12h + 8h

description: treatment 1


title: D4.12h + 8h

description: treatment 1


title: D1.12h + 8h_CD3/CD28

description: treatment 4


title: glioma 275

description: Gene expression analysis.


title: glioma 182

description: Gene expression analysis.

value: A (grade III)


title: glioma 113

description: Gene expression analysis.

value: GBM (grade IV)


title: glioma 147

description: Gene expression analysis.

value: A (grade II)


title: Myotube_sample2

status: Public on Aug 24 2009

city: Rensselaer

first: Sridar

middle: V

last: Chittur

state: NY

address: One Discovery Drive, CRC 342G

department: Center for Functional Genomics

institute: SUNY-University at Albany

description: CM01154_002_Diff_06012009_(HuEx-1_0-st-v2)

data_processing: Raw CEL files were processed using Affymetrix Expression Console Software using RMA-Core-DABG

source_name: Myotube

label_protocol: 1ug of total RNA was labeled according to Standard Affymetrix WT protocol for Exon 1.0 ST arrays

extract_protocol: total RNA was extracted from cell pellets using Trizol protocol

treatment_protocol: cells were supplied as pellets in trizol

value: Myotube


title: Myoblast_sample2

description: CM01154_002_Undiff_06012009_(HuEx-1_0-st-v2)

hyb_protocol: Standard Affymetrix WT protocol for Exon 1.0 ST arrays

source_name: Myoblast

value: Myoblast


title: Myoblast_sample1

scan_protocol: Standard Affymetrix WT protocol for Exon 1.0 ST arrays


title: Myotube_sample1


title: glioma 117

description: Gene expression analysis.


title: glioma 84

description: Gene expression analysis.


title: glioma 66

description: Gene expression analysis.


title: Myoblast_sample3

description: CM01201_001_Undiff_06012009_(HuEx-1_0-st-v2)


title: glioma 13

description: Gene expression analysis.


title: LA2711_30min_repeat1

status: Public on Jan 09 2007

city: Ithaca

first: Zhangjun

last: Fei

address: Tower Road

institute: Boyce Thompson Institute

description: Identification of salt stress regulated genes in tomato seedlings by suppression subtracted hybridization and microarray analysis

hyb_protocol: Cy5/Cy3-labeled cDNA were hybridized with the microarray at 42 °C overnight. Following hybridization, the arrays were washed with 0.2% SDS, 2×SSC at 42 °C for 5 min, and 0.2% SSC for 5 min at room temperature.

scan_protocol: Arrays were scanned with a confocal laser scanner, LuxScan™ 10K (CapitalBio Corp.)

data_processing: LOWESS

organism: Solanum lycopersicum

source_name: control plant

tag: plant from cultivar LA2711 without salt stress treatment

source_name: treated plant

tag: plant from cultivar LA2711 treated with salt stress for 30 minutes


title: LA2711_2hr_repeat1

tag: plant from cultivar LA2711 treated with salt stress for 2 hours


title: Myotube_sample3

description: CM01201_001_Diff_06012009_(HuEx-1_0-st-v2)

tag: cell type


title: ZS-5_30min_repeat1

tag: plant from cultivar ZS-5 treated with salt stress for 30 minutes

tag: plant from cultivar ZS-5 without salt stress treatment


title: ZS-5_30min_repeat2


title: LA2711_2hr_repeat2


title: ZS-5_2hr_repeat2

tag: plant from cultivar ZS-5 treated with salt stress for 2 hours


title: LA2711_6hr_repeat1

tag: plant from cultivar LA2711 treated with salt stress for 6 hours


title: LA2711_30min_repeat2


title: ZS-5_6hr_repeat1

tag: plant from cultivar ZS-5 treated with salt stress for 6 hours


title: Colorectal cancer patient SC6_vs_Pool

status: Public on Jun 06 2007

city: MADRID

first: Luis

last: LOMBARDIA

state: Madrid

address: Melchor Fernandez Almagro, 3

department: Molecualr Pathology Programme

country: Spain

institute: CNIO (Spanish National Cancer Center)

description: Informed consent was obtained from all participants following an explanation of the nature of the study, as approved by the research ethics board of our hospital. All patients were considered sporadic cases on the basis that no clinical antecedents of familial adenomatous polyposis were reported, and those that met the clinical criteria for hereditary non-polyposis colon cancer (Amsterdam criteria) were excluded.

hyb_protocol: Prehybridization was performed at 42ºC for 30-45 minutes in 6X SSC, 0.5% SDS and 1% BSA. Slides were rinsed five times with destilled water. Cy5 and Cy3 amplified RNA (aRNA) probes were mixed (30-50 pmol of each label) with 10 µg of PolyA (Sigma) and 1 µg of Cot-DNA (Invitrogen) in a final volume of 40 µl of hybridization buffer (50% formamide, 6X SSC, 0.5% SDS, 5X Denhardt’s). The probe was denatured at 95ºC for 5 minutes and applied to the slide using a coverslip. Slides were then incubated at 42ºC for 16h in hybridization chambers (Array-It). After incubation, slides were washed twice with 0.1X SSC, 0.1% SDS for 5 minutes each, three times with 0.1X SSC for 5 minutes and finally in distilled water for 10 seconds. Slides were dried by centrifugation at 563g for 1 minute.

scan_protocol: Images from Cy3 and Cy5 channels were equilibrated and captured with an Axon 4000B scanner (Axon Instruments) and spots quantified using GenePix 5.1 software (Axon). GPR files were then included in almaZen database software (Bioalma). Signals were background subtracted, and normalized by total intensity and lowess_pritn_tip_group.

data_processing: GPR files with raw data were introduced in almaZen database software (Bioalma). Signals were background subtracted, and normalized by total intensity and Print_tip_group_Lowess.

molecule: polyA RNA

label_protocol: aRNA was generated in the second amplification round including Cy3-aminoallyl-UTP for labeling by using CyDye PostLabelling Reactive Dye Pack (GE Healthcare) and following Ambion kit instructions. Labeled aRNA was measured in a Nanodrop1000.

extract_protocol: Plasma mRNA was obtained from 3 ml of sample using Dynabeads mRNA DIRECT Kit following manufacturer´s instructions. In brief, plasma was incubated with 200 ul of Dynabeads Oligo (dT) for 10 min at room temperature and the mRNA was eluted in 10 mM Tris-HCl. Since low amounts of mRNA were obtained, mRNA was 2-cycle amplified by Eberwine protocol using AminoAllyl MessageAmp aRNA kit (Ambion) following manufacturer instructions.

treatment_protocol: Blood sample (10 ml) was taken from the patient with colorectal carcinoma by venipuncture before intervention on the day of surgery, and the first several milliliters were discarded to eliminate skin-plug contamination. Plasma was prepared by centrifugation of peripheral blood at 2500 rpm for 25 minutes and divided into aliquots, which were snap frozen at -80ºC until processing.

tag: Blood sample from patients considered as Colorectal cancer sporadic case on the basis that no clinical antecedents of familial adenomatous polyposis were reported.

source_name: Normal_Control pool

label_protocol: aRNA was generated in the second amplification round including Cy5-aminoallyl-UTP for labeling by using CyDye PostLabelling Reactive Dye Pack (GE Healthcare) and following Ambion kit instructions. Labeled aRNA was measured in a Nanodrop1000.

treatment_protocol: Plasma was prepared by centrifugation of peripheral blood at 2500 rpm for 25 minutes and snap frozen at -80ºC until processing.

tag: Pool of blood samples from 26 healthy donors, obtained at the hematology unit of the hospital.


title: control 31

description: Gene expression analysis.

source_name: brain tissue, control

tag: tissue

value: control


title: LA2711_6hr_repeat2


title: glioma 242

description: Gene expression analysis.


title: ZS-5_6hr_repeat2


title: Yeast cell cycle-time point 110 min  2001-11-29_0110.rfm Yeast W303 cells

status: Public on Aug 05 2006

city: Seattle

first: Tata

last: Pramila

state: WA

address: 1100, Fairview Avenue N

department: Basic Sciences

institute: FHCRC

description: Yeast cell cycle

data_processing: normalized log ratio using Rosetta Resolver

organism: Saccharomyces cerevisiae

source_name: Yeast cell cycle-time point 110 min

treatment_protocol: Cells were arrested with alpha factor,and released into YEPD to get a synchronized population. Cells were sampled every 5 min after relase.

tag: Yeast cell cycle-time point 110 min

source_name: Yeast asynchronous culture

treatment_protocol: Cells were grown overnight to an OD of 0.6 in YEPD

tag: Yeast asynchronous culture


title: Yeast cell cycle-time point 105 min  2001-12-06_0105.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 105 min

tag: Yeast cell cycle-time point 105 min


title: Yeast cell cycle-time point 120 min  2001-11-29_0120.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 120 min

tag: Yeast cell cycle-time point 120 min


title: Yeast cell cycle-time point 115 min  2001-11-29_0115.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 115 min

tag: Yeast cell cycle-time point 115 min


title: Colorectal cancer patient SC11_vs_Pool


title: Yeast cell cycle-time point 65 min  2001-11-21_0065.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 65 min

tag: Yeast cell cycle-time point 65 min


title: ZS-5_2hr_repeat1

tag: plant without salt stress

tag: plant treated with salt stress for 2 hours


title: Yeast cell cycle-time point 70 min  2001-11-21_0070.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 70 min

tag: Yeast cell cycle-time point 70 min


title: Yeast cell cycle-time point 75 min  2001-11-28_0075.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 75 min

tag: Yeast cell cycle-time point 75 min


title: Yeast cell cycle-time point 55 min  2001-11-09_0055.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 55 min

tag: Yeast cell cycle-time point 55 min


title: Yeast cell cycle-time point 80 min  2001-11-28_0080.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 80 min

tag: Yeast cell cycle-time point 80 min


title: Yeast cell cycle-time point 40 min  2001-11-09_0040.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 40 min

tag: Yeast cell cycle-time point 40 min


title: Yeast cell cycle-time point 45 min  2001-11-09_0045.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 45 min

tag: Yeast cell cycle-time point 45 min


title: Yeast cell cycle-time point 85 min  2001-11-29_0085.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 85 min

tag: Yeast cell cycle-time point 85 min


title: Yeast cell cycle-time point 95 min  2001-11-29_0095.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 95 min

tag: Yeast cell cycle-time point 95 min


title: Yeast cell cycle-time point 50 min  2001-11-09_0050.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 50 min

tag: Yeast cell cycle-time point 50 min


title: Yeast cell cycle-time point 90 min  2001-11-29_0090.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 90 min

tag: Yeast cell cycle-time point 90 min


title: Yeast cell cycle-time point 15 min  2001-11-09_0015.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 15 min

tag: Yeast cell cycle-time point 15 min

tag: Yeast asynchronous culture


title: Yeast cell cycle-time point 100 min  2001-11-29_0100.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 100 min

tag: Yeast cell cycle-time point 100 min


title: Yeast cell cycle-time point 35 min  2001-11-09_0035.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 35 min

tag: Yeast cell cycle-time point 35 min

source_name: Yeast asynchronous culture


title: Yeast cell cycle-time point 60 min  2001-11-09_0060.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 60 min

tag: Yeast cell cycle-time point 60 min


title: Yeast cell cycle-time point 10 min  2001-11-09_0010.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 10 min

tag: Yeast cell cycle-time point 10 min


title: Yeast cell cycle-time point 20 min  2001-11-09_0020.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 20 min

tag: Yeast cell cycle-time point 20 min


title: Yeast cell cycle-time point 5 min  2001-11-09_0005.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 5 min

tag: Yeast cell cycle-time point 5 min


title: Yeast cell cycle-time point 0 min  2001-10-30_O.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 0 min

tag: Yeast cell cycle-time point 0 min


title: Yeast cell cycle-time point 105 min  2001-08-22_0105.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 105 min

tag: Yeast cell cycle-time point 105 min


title: Yeast cell cycle-time point 25 min  2001-11-09_0025.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 25 min

tag: Yeast cell cycle-time point 25 min


title: Yeast cell cycle-time point 90 min  2001-08-22_0090.rfm Yeast W303 cells

description: Yeast cell cycle


title: Yeast cell cycle-time point 120 min  2001-08-22_0120.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 120 min

tag: Yeast cell cycle-time point 120 min


title: Yeast cell cycle-time point 80 min  2001-08-22_0080.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 80 min

tag: Yeast cell cycle-time point 80 min


title: Yeast cell cycle-time point 110 min  2001-08-22_0110.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 110 min

tag: Yeast cell cycle-time point 110 min


title: Yeast cell cycle-time point 85 min  2001-08-22_0085.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 85 min

tag: Yeast cell cycle-time point 85 min


title: Yeast cell cycle-time point 115 min  2001-08-22_0115.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 115 min

tag: Yeast cell cycle-time point 115 min


title: Yeast cell cycle-time point 75 min  2001-08-22_0075.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 75 min

tag: Yeast cell cycle-time point 75 min


title: Yeast cell cycle-time point 50 min  2001-08-17_0050.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 50 min

tag: Yeast cell cycle-time point 50 min


title: Yeast cell cycle-time point 60 min  2001-08-22_0060.rfm Yeast W303 cells

description: Yeast cell cycle

tag: Yeast asynchronous culture


title: Yeast cell cycle-time point 55 min  2001-08-17_0055.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 55 min

tag: Yeast cell cycle-time point 55 min


title: Yeast cell cycle-time point 70 min  2001-08-22_0070.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 70 min

tag: Yeast cell cycle-time point 70 min


title: Yeast cell cycle-time point 100 min  2001-08-22_0100.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 100 min

tag: Yeast cell cycle-time point 100 min

source_name: Yeast asynchronous culture


title: Yeast cell cycle-time point 40 min  2001-08-17_0040.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 40 min

tag: Yeast cell cycle-time point 40 min


title: Yeast cell cycle-time point 45 min  2001-08-17_0045.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 45 min

tag: Yeast cell cycle-time point 45 min


title: Yeast cell cycle-time point 30 min  2001-08-17_0030.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 30 min

tag: Yeast cell cycle-time point 30 min


title: Yeast cell cycle-time point 25 min  2001-08-17_0025.rfm Yeast W303 cells

description: Yeast cell cycle


title: Yeast cell cycle-time point 20 min  2001-08-17_0020.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 20 min

tag: Yeast cell cycle-time point 20 min


title: Yeast cell cycle-time point 15 min  2001-08-17_0015.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 15 min

tag: Yeast cell cycle-time point 15 min


title: Yeast cell cycle-time point 95 min  2001-08-22_0095.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 95 min

tag: Yeast cell cycle-time point 95 min


title: Yeast cell cycle-time point 10 min  2001-08-17_0010.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 10 min

tag: Yeast cell cycle-time point 10 min


title: Yeast cell cycle-time point 5 min  2001-08-17_0005.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 5 min

tag: Yeast cell cycle-time point 5 min


title: Yeast cell cycle-time point 65 min  2001-08-22_0065.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 65 min

tag: Yeast cell cycle-time point 65 min


title: Yeast cell cycle-time point 35 min  2001-08-17_0035.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 35 min

tag: Yeast cell cycle-time point 35 min


title: Yeast cell cycle-time point 30 min  2001-11-09_0030.rfm Yeast W303 cells

description: Yeast cell cycle


title: Yeast cell cycle-time point 0 min  2001-08-17_0000.rfm Yeast W303 cells

description: Yeast cell cycle

source_name: Yeast cell cycle-time point 0 min

tag: Yeast cell cycle-time point 0 min


title: NA18860 (Cy3) versus NA10851 (Cy5)

status: Public on Nov 17 2005

city: Hinxton

first: Dan

last: Andrews

address: Wellcome Trust Genome Campus

country: United Kingdom

institute: Sanger Institute

description: B-lymphocytes derived from blood

hyb_protocol: See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319

data_processing: Non-normalised signal intensity values derived from NimbleScan v2 software.

source_name: B-lymphocyte cell line, normal/untreated growth

tag: hapmap sample id

value: NA18860, Gender:Male, Cell type:B-lymphocytes, Tissue:Blood, Panel:Yoruban

tag: coriell cell line repository identifier

tag: http

tag: HapMap sample id

value: NA10851, Gender:Male, Cell type:B-lymphocytes, Tissue:Blood, Panel:CEPH

tag: Coriell cell line repository identifier


title: NA18857 (Cy3) versus NA10851 (Cy5)

description: B-lymphocytes derived from blood

scan_protocol: See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319

value: NA18857, Gender:Male, Cell type:B-lymphocytes, Tissue:Blood, Panel:Yoruban


title: NA18515 (Cy3) versus NA10851 (Cy5)

description: B-lymphocytes derived from blood

label_protocol: See Seltzer et al (2005) Genes, Chromosomes & Cancer 44:305-319

value: NA18515, Gender:Male, Cell type:B-lymphocytes, Tissue:Blood, Panel:Yoruban


title: NA18854 (Cy3) versus NA10851 (Cy5)

description: B-lymphocytes derived from blood

value: NA18854, Gender:Male, Cell type:B-lymphocytes, Tissue:Blood, Panel:Yoruban


title: NA18521 (Cy3) versus NA10851 (Cy5)

description: B-lymphocytes derived from blood

value: NA18521, Gender:Male, Cell type:B-lymphocytes, Tissue:Blood, Panel:Yoruban


title: NA18500 (Cy3) versus NA10851 (Cy5)

description: B-lymphocytes derived from blood

value: NA18500, Gender:Male, Cell type:B-lymphocytes, Tissue:Blood, Panel:Yoruban


title: NA18503 (Cy3) versus NA10851 (Cy5)

description: B-lymphocytes derived from blood

value: NA18503, Gender:Male, Cell type:B-lymphocytes, Tissue:Blood, Panel:Yoruban


title: NA18506 (Cy3) versus NA10851 (Cy5)

description: B-lymphocytes derived from blood

value: NA18506, Gender:Male, Cell type:B-lymphocytes, Tissue:Blood, Panel:Yoruban