title: SLAM Project Data: Synthetic Lethality with amn1

description:
Internal identifier for dataset: SL/090707/6
Original datafile name: 090707NG129682A02_532.pair
Original datafile2 name: 090707NG129682A02_635.pair
SD of values from reference genes: 0.255
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.61 3.67 4.22
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 258 well B07 (strain 23297)


title: SLAM Project Data: Synthetic Lethality with hor2

status: Public on Feb 28 2013

type: genomic

city: Baltimore

first: Jef

last: Boeke

address: 733 N BROADWAY # 339

country: USA

institute: Johns Hopkins U

description:
Internal identifier for dataset: SL/070112/11
Original datafile name: 070112_215_F03_11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.332
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.08 3.21 3.53
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

hyb_protocol: Labeled extracts were hybridized overnight to Agilent 22k microarray slides at 42 degrees C.

scan_protocol: Images were acquired with a GenePix 4000B or 4200 AL scanner at 10 um resolution.

data_processing: Two-channel image files were analyzed with the GenePix Pro software package (Molecular Dynamics, version 5.1 or higher). Annotations were reconstructed from data downloaded from the Saccharomyces Genome Database on 2008-11-15. Numerical data were obtained as the median of foreground signal intensities. Background signal intensities were not used. Custom R packages (hoptag v3.9-7; hoptagInfo02A v3.9-6) were used with their default options. See the software and PDF documentation included with this GEO Series submission for details. The VALUE column represents a dynamically weighted sum of data from the UpTag and DnTag probes for each gene.

molecule: genomic DNA

organism: Saccharomyces cerevisiae

source_name: Reference

label_protocol: UpTag and DnTag sequences were amplified from genomic DNA by asymmetric PCR using labeled primers.

growth_protocol: Cells were grown at 30 degrees C for approximately eight doublings using "Magic Marker" selectable medium supplemented with uracil.

extract_protocol: Genomic DNA was extracted by phenol extraction or by use of proprietary kits (e.g., Epicentre, Norgen).

tag: query gene

tag: knockout clone

value: Plate 215 well F03 (strain 20199)

tag: genetic background

tag: pool genotype

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX

source_name: Test

growth_protocol: Cells were grown without added uracil, using materials and procedures that were otherwise the same as those for Channel 1.


title: SLAM Project Data: Synthetic Lethality with aly1

description:
Internal identifier for dataset: SL/100505/10
Original datafile name: 308310A02_532.pair
Original datafile2 name: 308310A02_635.pair
SD of values from reference genes: 0.501
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.55 1.36 1.67
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

hyb_protocol: Labeled extracts were hybridized overnight to NimbleGen 72k 4-plex microarray slides at 42 degrees C.

scan_protocol: Images were acquired with a GenePix 4200AL scanner at 5 um resolution or an Agilent G2505C scanner at 2 um resolution

data_processing: Two-channel image files were analyzed with the NimbleScan software package (Roche NimbleGen, version 2.3.78 or higher). Annotations were reconstructed from data downloaded from the Saccharomyces Genome Database on 2008-11-15. Numerical data were obtained as the mean of the central pixels. Background signal intensities were not used. Custom R packages (hoptag v3.9-7; hoptagInfo07A v3.9-6) were used with their default options. See the software and PDF documentation included with this GEO Series submission for details. The VALUE column represents a dynamically weighted sum of data from the UpTag and DnTag probes for each gene.

value: Plate 235 well F09 (strain 25092)


title: SLAM Project Data: Synthetic Lethality with amd2

description:
Internal identifier for dataset: SL/100506/14
Original datafile name: 308384A02_532.pair
Original datafile2 name: 308384A02_635.pair
SD of values from reference genes: 0.430
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.56 0.51 1.56
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate  well  (strain NA)


title: SLAM Project Data: Synthetic Lethality with hir2

description:
Internal identifier for dataset: SL/080805/7
Original datafile name: 080805_HIR2_7.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.515
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.55 1.80 1.98
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 207 well F05 (strain 21814)


title: SLAM Project Data: Synthetic Lethality with hhf1-rep2

description:
Internal identifier for dataset: SL/050907/16
Original datafile name: 050907_253_A04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.373
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.78 1.72 2.09
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 253 well A04 (strain 23144)


title: SLAM Project Data: Synthetic Lethality with hor7

description:
Internal identifier for dataset: SL/050628/11
Original datafile name: 050628_205_H09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.500
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.06 1.01 1.40
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well H09 (strain 20837)


title: SLAM Project Data: Synthetic Lethality with hho1

description:
Internal identifier for dataset: SL/050712/6
Original datafile name: 050712_211_C04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.529
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.40 0.82 1.57
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well C04 (strain 22125)


title: SLAM Project Data: Synthetic Lethality with hfi1

description:
Internal identifier for dataset: SL/050628/16
Original datafile name: 050628_210_A05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.690
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.66 0.92 1.65
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 210 well A05 (strain 21038)


title: SLAM Project Data: Synthetic Lethality with hhf1

description:
Internal identifier for dataset: SL/050909/17
Original datafile name: 050909_253_A04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.484
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.57 0.81 1.63
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with hda1

description:
Internal identifier for dataset: SL/050916/17
Original datafile name: 050916_251_E09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.448
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.97 1.72 1.67
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 251 well E09 (strain 25347)


title: SLAM Project Data: Synthetic Lethality with hir2-rep2

description:
Internal identifier for dataset: SL/080729/4
Original datafile name: 080729_HIR2_std12_4.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.444
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.63 2.29 2.35
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with hip1

description:
Internal identifier for dataset: SL/080417/6
Original datafile name: 080417_216_E7_6_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.407
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.83 2.41 2.67
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well E07 (strain 24821)


title: SLAM Project Data: Synthetic Lethality with hat2

description:
Internal identifier for dataset: SL/070726/11
Original datafile name: 070726_214_H06_11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.586
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.96 1.42 1.35
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 214 well H06 (strain 20297)


title: SLAM Project Data: Synthetic Lethality with gyp5

description:
Internal identifier for dataset: SL/050628/19
Original datafile name: 050628_210_A11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.502
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.74 1.09 1.79
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 210 well A11 (strain 21043)


title: SLAM Project Data: Synthetic Lethality with hch1

description:
Internal identifier for dataset: SL/041228/5
Original datafile name: 041228_207_A3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.492
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.56 2.30 2.14
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 207 well A03 (strain 21163)


title: SLAM Project Data: Synthetic Lethality with ale1

description:
Internal identifier for dataset: SL/091204/6
Original datafile name: 091204NG301645A02_532.pair
Original datafile2 name: 091204NG301645A02_635.pair
SD of values from reference genes: 0.384
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.54 1.45 2.44
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 223 well H10 (strain 22431)


title: SLAM Project Data: Synthetic Lethality with aip1

description:
Internal identifier for dataset: SL/100616/20
Original datafile name: 308145A04_532.pair
Original datafile2 name: 308145A04_635.pair
SD of values from reference genes: 0.330
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.16 2.42 2.65
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 239 well E01 (strain 26227)


title: SLAM Project Data: Synthetic Lethality with gtt3

description:
Internal identifier for dataset: SL/061122/5
Original datafile name: 061122_214_E08.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.408
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.88 2.12 2.10
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 214 well E08 (strain 20258)


title: SLAM Project Data: Synthetic Lethality with alk2

description:
Internal identifier for dataset: SL/100427/18
Original datafile name: 310188A02_532.pair
Original datafile2 name: 310188A02_635.pair
SD of values from reference genes: 0.352
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.36 2.08 2.42
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well E07 (strain 23035)


title: SLAM Project Data: Synthetic Lethality with gut1

description:
Internal identifier for dataset: SL/080425/9
Original datafile name: 080425_216_H07_9_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.319
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.83 2.44 2.63
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well H07 (strain 20931)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with ald6

description:
Internal identifier for dataset: SL/100413/11
Original datafile name: 308496A03_532.pair
Original datafile2 name: 308496A03_635.pair
SD of values from reference genes: 0.402
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.92 1.56 2.13
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 229 well G05 (strain 22767)


title: SLAM Project Data: Synthetic Lethality with gtt2

description:
Internal identifier for dataset: SL/050519/2
Original datafile name: 050519_202_D05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.539
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.29 1.50 1.61
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 202 well D05 (strain 21548)


title: SLAM Project Data: Synthetic Lethality with aha1

description:
Internal identifier for dataset: SL/100406/7
Original datafile name: 308378A03_532.pair
Original datafile2 name: 308378A03_635.pair
SD of values from reference genes: 0.348
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.73 1.98 2.58
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well E01 (strain 23573)


title: SEARS-1 with array type poplar from Affymetrix

type: RNA

city: Beaucouze

first: sandrine

last: balzergue

address: Rue G. Morel

country: France

institute: INRA

description: This project aims to identify genes of interest for water deficit acclimation and/or adaptation in a tree species: poplar. We look for genes and gene expression networks related to drought stress. We intend to analyse the transcriptome in laser-microdissected stomata, in two genotypes, Carpaccio and Soligo, at various stages and intensities of stress. In response to water deficit, water loss is adjusted through stomatal conductance. Transcriptome of pure stomatal material should bring valuable information hardly reachable in whole leaf transcriptome analysis. The comparison between medium and severe stress intensities and between early and long term stresses will power the selection of genes of interest. The co-analysis of two genotypes of contrasted tolerance to water deficit should help to discriminate genes presenting a potential adaptative character from genes responding passively to the constraint.

hyb_protocol: labelled extract quantity: 15ug

scan_protocol: GCOS, Biotin:pmt voltage 570nm,650V,laser power 1

data_processing: The data were normalized with the gcrma algorithm (Irizarry et al., 2003), available in the Bioconductor package (Gentleman and Carey, 2002).

label: Biotin

molecule: total RNA

organism: Populus x canadensis

label_protocol: labelling Biotin direct, amplification=yes, cRNA 20 ug.

growth_protocol: leaf - Plants were grown in 10-liter pots filled with peat/sand mix (50/50 v/v amended with 1g/l CaMg(CO2)3 and fertilised with Nutricote T100 (13-13-13-2, N-P-K-Mg + trace elements)). In the greenhouse, temperature oscillated with outside irradiance but kept in the range 15-26 °C, and air humidity during day oscillated in the range 50-75%. Irradiance depended on outside and varied in the range 300-850 µmol m-1 s-1 (cloudy-sunny), and was over750 µmol m-1 s-1 most of the experience. During the 3 days preceding harvest, mean day temperature was 25°C, humidity was 65% and light was 850 µmol m-1 s-1

treatment_protocol: Name:EAR - environmental treatment - abiotic stress,water deficit:time 36hour . EAR : Early response to water deficit : watering was stopped 30h before harvest and soil relative extractable water (REW) was reduced to 20-35% of field capacity.

tag: clone

value: Soligo

tag: hybrid

value: populus deltoides x populus nigra

tag: harvest date

tag: tissue

value: stomata


title: CAMOS-2 with array type poplar from Affymetrix

treatment_protocol: Name:AMO - environmental treatment - abiotic stress,water deficit:time 12day . AMO : Acclimated response to moderate water deficit : soil relative extractable water (REW) was reduced and maintained in the range 10-20 % of field capacity for 12 days

value: Carpaccio


title: CAMOS-1 with array type poplar from Affymetrix


title: SEARS-2 with array type poplar from Affymetrix


title: CCTLS-2 with array type poplar from Affymetrix

treatment_protocol: no treatment


title: SLAM Project Data: Synthetic Lethality with aif1

description:
Internal identifier for dataset: SL/100604/4
Original datafile name: 308116A04_532.pair
Original datafile2 name: 308116A04_635.pair
SD of values from reference genes: 0.458
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.24 1.37 1.53
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 239 well E06 (strain 26233)


title: SLAM Project Data: Synthetic Lethality with ady2

description:
Internal identifier for dataset: SL/090319/7
Original datafile name: 090319NG142362BA03_532.pair
Original datafile2 name: 090319NG142362BA03_635.pair
SD of values from reference genes: 0.583
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.55 1.84 1.83
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 219 well C11 (strain 23490)


title: SAMIS-1 with array type poplar from Affymetrix

treatment_protocol: Name:AMI - environmental treatment - abiotic stress,water deficit:time 12day . AMI : Acclimated response to mild water deficit : soil relative extractable water (REW) was reduced and maintained in the range 20-30 % of field capacity for 12 days.


title: SAMOS-2 with array type poplar from Affymetrix


title: CCTLS-1 with array type poplar from Affymetrix


title: SLAM Project Data: Synthetic Lethality with gpx2

description:
Internal identifier for dataset: SL/051006/8
Original datafile name: 051006_212_C03.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.409
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.74 1.67 2.15
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 212 well C03 (strain 23384)


title: SLAM Project Data: Synthetic Lethality with gpm3

description:
Internal identifier for dataset: SL/050510/12
Original datafile name: 050510_209_E07.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.585
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.22 1.50 1.78
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well E07 (strain 21748)


title: SAMIS-2 with array type poplar from Affymetrix


title: SLAM Project Data: Synthetic Lethality with gpd2

description:
Internal identifier for dataset: SL/050510/13
Original datafile name: 050510_209_E10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.680
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.26 1.29 1.63
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well E10 (strain 21751)


title: SLAM Project Data: Synthetic Lethality with gsf2

description:
Internal identifier for dataset: SL/050526/3
Original datafile name: 050526_203_H02.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.399
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.89 2.21 2.51
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 203 well H02 (strain 20523)


title: SLAM Project Data: Synthetic Lethality with yor024w

description:
Internal identifier for dataset: SL/050107/10.1
Original datafile name: 050106_207_E3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.734
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.18 1.14 1.14
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 207 well E03 (strain 21800)


title: SLAM Project Data: Synthetic Lethality with ypl136w

description:
Internal identifier for dataset: SL/050920/10
Original datafile name: 050920_211_B10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.683
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.92 0.84 1.12
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well B10 (strain 22115)


title: SLAM Project Data: Synthetic Lethality with yuh1-rep2

description:
Internal identifier for dataset: SL/050909/15
Original datafile name: 050909_245_G05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.575
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.07 0.78 1.14
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 245 well G05 (strain 26911)


title: SLAM Project Data: Synthetic Lethality with gpb1

description:
Internal identifier for dataset: SL/050405/4
Original datafile name: 050405_208G9_.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.472
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.67 1.90 2.16
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well G09 (strain 21668)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with gsg1

description:
Internal identifier for dataset: SL/051012/6
Original datafile name: 051012_213_A07.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.413
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.17 2.25 2.45
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 213 well A07 (strain 24042)


title: SLAM Project Data: Synthetic Lethality with adr1

description:
Internal identifier for dataset: SL/100406/9
Original datafile name: 308409A01_532.pair
Original datafile2 name: 308409A01_635.pair
SD of values from reference genes: 0.347
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.43 1.46 2.20
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well E03 (strain 23575)


title: SLAM Project Data: Synthetic Lethality with adh3

description:
Internal identifier for dataset: SL/100616/4
Original datafile name: 308130A04_532.pair
Original datafile2 name: 308130A04_635.pair
SD of values from reference genes: 0.423
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.67 1.74 1.81
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 239 well D02 (strain 26217)


title: SLAM Project Data: Synthetic Lethality with yol014w-rep2

description:
Internal identifier for dataset: SL/050505/9
Original datafile name: 050505_209_B02.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.693
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): NA 1.10 1.11
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well B02 (strain 21705)


title: SLAM Project Data: Synthetic Lethality with yor024w-rep2

description:
Internal identifier for dataset: SL/050916/1
Original datafile name: 050916_207-2_E03.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.639
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): NA 1.14 1.11
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with adp1

description:
Internal identifier for dataset: SL/090319/8
Original datafile name: 090319NG142362BA04_532.pair
Original datafile2 name: 090319NG142362BA04_635.pair
SD of values from reference genes: 0.620
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.25 1.84 1.69
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 219 well C12 (strain 23491)


title: SLAM Project Data: Synthetic Lethality with ade2

description:
Internal identifier for dataset: SL/091118/9
Original datafile name: 091118NG299988A01_532.pair
Original datafile2 name: 091118NG299988A01_635.pair
SD of values from reference genes: 0.366
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.73 2.18 2.78
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 223 well E04 (strain 22384)


title: SLAM Project Data: Synthetic Lethality with ade6-rep2

description:
Internal identifier for dataset: SL/090728/13
Original datafile name: 090728NG129574A01_532.pair
Original datafile2 name: 090728NG129574A01_635.pair
SD of values from reference genes: 0.570
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.69 1.83 1.83
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well F09 (strain 24691)


title: SLAM Project Data: Synthetic Lethality with ymr226c

description:
Internal identifier for dataset: SL/050623/17
Original datafile name: 050623_205_F07.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.529
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.03 0.80 1.14
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well F07 (strain 20812)


title: CAMIS-1 with array type poplar from Affymetrix

description: This project aims to identify genes of interest for water deficit acclimation and/or adaptation in a tree species: poplar. We look for genes and gene expression networks related to drought stress. We intend to analyse the transcriptome in laser-microdissected stomata, in two genotypes, Carpaccio and Soligo, at various stages and intensities of stress. In response to water deficit, water loss is adjusted through stomatal conductance. Transcriptome of pure stomatal material should bring valuable information hardly reachable in whole leaf transcriptome analysis. The comparison between medium and severe stress intensities and between early and long term stresses will power the selection of genes of interest. The co-analysis of two genotypes of contrasted tolerance to water deficit should help to discriminate genes presenting a potential adaptative character from genes responding passively to the constraint.

value: Carpaccio

value: populus deltoides x populus nigra

value: stomata


title: CEARS-1 with array type poplar from Affymetrix


title: SCTLS-2 with array type poplar from Affymetrix

value: Soligo


title: CAMIS-2 with array type poplar from Affymetrix


title: SLAM Project Data: Synthetic Lethality with ymr291w

description:
Internal identifier for dataset: SL/041222/1
Original datafile name: 041222_206_C2.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.532
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.01 0.89 1.16
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 206 well C02 (strain 20878)


title: SAMOS-1 with array type poplar from Affymetrix


title: SLAM Project Data: Synthetic Lethality with ylf2

description:
Internal identifier for dataset: SL/080923/12
Original datafile name: 080923_217_A10_12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.323
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.70 2.78 3.10
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well A10 (strain 20949)


title: SLAM Project Data: Synthetic Lethality with yme2-rep2

description:
Internal identifier for dataset: SL/041222/3
Original datafile name: 041222_206_D2.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.904
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.09 1.07 1.02
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 206 well D02 (strain 20890)


title: SLAM Project Data: Synthetic Lethality with add66

description:
Internal identifier for dataset: SL/100428/22
Original datafile name: 308152A02_532.pair
Original datafile2 name: 308152A02_635.pair
SD of values from reference genes: 0.323
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.51 2.14 2.23
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 235 well D02 (strain 25056)


title: SLAM Project Data: Synthetic Lethality with yhr022c-rep2

description:
Internal identifier for dataset: SL/080925/12
Original datafile name: 080925_217_C08_12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.337
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.89 3.18 3.43
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well C08 (strain 20985)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with yhr112c-rep3

description:
Internal identifier for dataset: SL/081111/10
Original datafile name: 081111_218_A04_LSG_10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.369
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.55 2.52 2.57
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well A04 (strain 21940)


title: SLAM Project Data: Synthetic Lethality with yhl026c

description:
Internal identifier for dataset: SL/080923/4.1
Original datafile name: 080923_217_A01_4_f8.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.319
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.42 2.80 3.08
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well A01 (strain 20937)


title: SLAM Project Data: Synthetic Lethality with yhl021c

description:
Internal identifier for dataset: SL/080923/7.1
Original datafile name: 080923_217_A04_7_f8.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.509
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.59 1.77 1.76
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well A04 (strain 20942)


title: SLAM Project Data: Synthetic Lethality with yhl012w

description:
Internal identifier for dataset: SL/081119/10
Original datafile name: 081119_217_A12_GdPmx_10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.377
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.94 2.35 2.46
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well A12 (strain 20951)


title: SLAM Project Data: Synthetic Lethality with yhl017w

description:
Internal identifier for dataset: SL/080923/10.1
Original datafile name: 080923_217_A07_10_f8.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.327
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.05 2.60 3.10
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well A07 (strain 20946)


title: SLAM Project Data: Synthetic Lethality with yhl010c

description:
Internal identifier for dataset: SL/080925/5
Original datafile name: 080925_217_B01_5.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.426
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.90 2.11 2.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well B01 (strain 20953)


title: SLAM Project Data: Synthetic Lethality with yhl008c

description:
Internal identifier for dataset: SL/080925/7
Original datafile name: 080925_217_B03_7_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.668
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.57 1.59 1.68
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well B03 (strain 20955)


title: SLAM Project Data: Synthetic Lethality with ace2

description:
Internal identifier for dataset: SL/090331/11
Original datafile name: 090331NG142632BA03_532.pair
Original datafile2 name: 090331NG142632BA03_635.pair
SD of values from reference genes: 0.467
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.77 2.02 2.09
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 219 well E08 (strain 24088)


title: SLAM Project Data: Synthetic Lethality with ach1

description:
Internal identifier for dataset: SL/100427/22
Original datafile name: 310191A02_532.pair
Original datafile2 name: 310191A02_635.pair
SD of values from reference genes: 0.381
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.22 1.80 2.19
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well F01 (strain 23041)


title: SLAM Project Data: Synthetic Lethality with acf2

description:
Internal identifier for dataset: SL/090331/20
Original datafile name: 090331NG142635BA04_532.pair
Original datafile2 name: 090331NG142635BA04_635.pair
SD of values from reference genes: 0.463
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.56 2.09 2.10
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 219 well F09 (strain 24101)


title: CEARS-2 with array type poplar from Affymetrix

value: Carpaccio

value: populus deltoides x populus nigra

value: stomata


title: Tg(fabp10a:def)-I liver_biological rep1

city: Hangzhou

first: Jinrong

last: Peng

address: 866 Yuhangtang Road

country: China

institute: Zhejiang University

description: Gene expression data from the adult livers of 3-month-old Tg(fabp10a:def)-I transgenic line

hyb_protocol: Samples were hybridized with the GeneChip® Zebrafish Genome Array for 16 h, followed by washed and stained with the Affymetrix fluidics station 450.

scan_protocol: GeneChips were scanned with the Affymetrix 3000 7G plus scanner.

data_processing: Dat and Cel files were obtained by the AGCC software, and the CHP files were generated with MAS5.0 method by Affymetrix Expression Console.

label: biotin

organism: Danio rerio

source_name: The adult livers of 3-month-old Tg(fabp10a:def)-I transgenic line

label_protocol: Samples were amplified and labeled using the 3' IVT Express Kit (Affymetrix)

growth_protocol: Zebrafish were raised and maintained in the standard Zebrafish Unit under a constant 14 hour on/10 hour off light cycle at 28℃.

extract_protocol:
Zebrafish were anesthetized in Tricaine solution and dissected for the non-fixed liver tissue. The tissues were put into the Trizol immediately and passed through 23-26 G needle for homogenization.
Trizol extraction of total RNA was performed according to the manufacturer's instructions.

tag: strain

value: AB

tag: genotype

tag: gender

value: male

tag: age

value: liver


title: Tg(fabp10a:def)-I liver_biological rep2


title: SLAM Project Data: Synthetic Lethality with ygr168c

description:
Internal identifier for dataset: SL/081007/8
Original datafile name: 081007_216_C10_8_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.961
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.22 1.05 1.25
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well C10 (strain 24798)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with acb1

description:
Internal identifier for dataset: SL/090717/5
Original datafile name: 090717NG129685A01_532.pair
Original datafile2 name: 090717NG129685A01_635.pair
SD of values from reference genes: 0.422
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.57 2.79 2.83
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate  well  (strain NA)


title: Tg(fabp10a:def)-I liver_biological rep3


title: SCTLS-1 with array type poplar from Affymetrix

description: This project aims to identify genes of interest for water deficit acclimation and/or adaptation in a tree species: poplar. We look for genes and gene expression networks related to drought stress. We intend to analyse the transcriptome in laser-microdissected stomata, in two genotypes, Carpaccio and Soligo, at various stages and intensities of stress. In response to water deficit, water loss is adjusted through stomatal conductance. Transcriptome of pure stomatal material should bring valuable information hardly reachable in whole leaf transcriptome analysis. The comparison between medium and severe stress intensities and between early and long term stresses will power the selection of genes of interest. The co-analysis of two genotypes of contrasted tolerance to water deficit should help to discriminate genes presenting a potential adaptative character from genes responding passively to the constraint.

value: Soligo


title: wild type zebrafish liver_biological rep3

description: Gene expression data from the adult livers of 3-month-old wild type zebrafish

source_name: The adult livers of 3-month-old wild type zebrafish

value: Wild type


title: SLAM Project Data: Synthetic Lethality with abf2

description:
Internal identifier for dataset: SL/100616/3
Original datafile name: 308130A03_532.pair
Original datafile2 name: 308130A03_635.pair
SD of values from reference genes: 0.278
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): NA 2.94 2.85
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 239 well C04 (strain 26205)


title: SLAM Project Data: Synthetic Lethality with ygr131w

description:
Internal identifier for dataset: SL/081119/7
Original datafile name: 081119_215_H11_7.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.341
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.09 2.01 2.32
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well H11 (strain 24761)


title: SLAM Project Data: Synthetic Lethality with yhi9

description:
Internal identifier for dataset: SL/081007/11
Original datafile name: 081007_217_C11_11_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.721
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.40 1.53 1.59
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well C11 (strain 20992)


title: SLAM Project Data: Synthetic Lethality with yer066c-a

description:
Internal identifier for dataset: SL/081119/5
Original datafile name: 081119_215_F05_5.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.416
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.21 1.46 2.08
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well F05 (strain 20204)


title: SLAM Project Data: Synthetic Lethality with ygr205w

description:
Internal identifier for dataset: SL/070522/16.5
Original datafile name: 070522A04_NG2_x5_532.pair
Original datafile2 name: 070522A04_NG2_x5_635.pair
SD of values from reference genes: 0.381
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.92 2.40 2.70
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well F05 (strain 24835)


title: wild type zebrafish liver_biological rep1


title: SLAM Project Data: Synthetic Lethality with aat1

description:
Internal identifier for dataset: SL/091022/9
Original datafile name: 091022NG300000BA01_532.pair
Original datafile2 name: 091022NG300000BA01_635.pair
SD of values from reference genes: 0.543
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.55 1.59 1.78
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 222 well E01 (strain 24956)


title: SLAM Project Data: Synthetic Lethality with yen1

description:
Internal identifier for dataset: SL/070703/8
Original datafile name: 070703_215_D04_8.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.744
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.04 1.02 1.12
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well D04 (strain 20174)


title: SLAM Project Data: Synthetic Lethality with ygr182c

description:
Internal identifier for dataset: SL/070522/14
Original datafile name: 070522A02_NG1_532.pair
Original datafile2 name: 070522A02_NG1_635.pair
SD of values from reference genes: 0.355
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.78 3.26 3.83
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well D12 (strain 24812)


title: SLAM Project Data: Synthetic Lethality with yel020c

description:
Internal identifier for dataset: SL/061122/7
Original datafile name: 061122_214_E11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.766
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.92 1.03 1.02
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 214 well E11 (strain 20261)


title: SLAM Project Data: Synthetic Lethality with aat1-rep2

description:
Internal identifier for dataset: SL/090921/14
Original datafile name: 090917NG301565A02_532.pair
Original datafile2 name: 090917NG301565A02_635.pair
SD of values from reference genes: 0.641
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.63 1.32 1.59
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with stb3

description:
Internal identifier for dataset: SL/070906/1.3
Original datafile name: 070906-NG-1-A-A03_532.pair
Original datafile2 name: 070906-NG-1-A-A03_635.pair
SD of values from reference genes: 0.413
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.96 1.92 2.37
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well A05 (strain 23527)


title: wild type zebrafish liver_biological rep2

value: AB

value: male


title: HeLa-TMF1 siRNA

city: Oslo

first: Heidi

last: Lyng

address: Montebello

department: Department of Radiation Biology

country: Norway

institute: Oslo University Hospital

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were normalised using quantile normalisation in BeadStudio 3.1.3.0

organism: Homo sapiens

source_name: Uterine cervical cancer

label_protocol: Biotinylated cRNA were prepared according to the standard Illumina protocol

growth_protocol: The cells were incubated in Dulbecco's Modified Eagle medium with GlutaMAX supplemented with 10% fetal calf serum (FCS) and 100 U/ml penicillin/streptomycin (Gibco) under a 5% CO2 atmosphere at 37°C, and subcultured twice a week.

extract_protocol: RNA was extracted using RNeasy MiniKit (Quiagen), according to the manufacturers’ instructions.  Quality control was performed with Agilent Bioanalyser.

treatment_protocol: Mock cells received only transfection reagent, control cells were transfected with 100nM siGENOME non-targeting siRNA Pool#1 (Dharmacon, Chicago, IL) mixed with Oligofectamine transfection reagent (Invitrogen, Carlsbad, CA), siRNA treated cells were transfected with 100nM siGENOME SMARTpool (Dharmacon, Chicago, IL) with four siRNAs of the gene of interest mixed with Oligofectamine transfection reagent (Invitrogen, Carlsbad, CA).

tag: cell line

value: HeLa

tag: cell type

value: Uterine cervical cancer

tag: histology

value: Squamous cell carcinoma

tag: transfected with

value: 100nM siGENOME SMARTpool with TMF1 siRNA


title: SA.CDK.0.R3

city: Vienna

first: Pavel

last: Kovarik

address: Dr. Bohr-Gasse 9

department: Max F. Perutz Laboratories

country: Austria

institute: University of Vienna

description: SAMPLE 24

hyb_protocol: Agilent's SurePrint G3 Mouse GE 8x60K Microarray, (Agilent Microarray Design ID 028005).RNA quality was checked on RNA 6000 Nano chips using a Bioanalyzer 2100 (Agilent Technologies, Palo Alto, CA, USA). Agilent’s Low Input Quick Amp Labeling Kit, one-color was used to generate fluorescent cRNA. The amplified cyanine 3-labeled cRNA samples were then purified using Promega’s SV Total RNA Isolation System and hybridized to Agilent Whole Mouse Genome Microarrays, 8x60K.

scan_protocol: Agilent Scanner, according to the standard protocol of the manufacturer

data_processing: Further analyses were performed using Bioconductor rooted in the statistical computing environment R. The raw intensities were imported into Bioconductor and further processed with the limma package. Quality Controls were performed using the arrayQualityMetrics package. The outlier array #10 [SA.CDK.gamma.R3] was removed from subsequent analysis. Normalization between arrays was performed using the quantile method, duplicate probes were averaged and a linear model also including a batch effect between Biological Replicates 1 and 2&3 was fitted due to a batch effect shown by the QA PCA plots. P-values were adjusted for multiple testing using the Benjamini & Hochberg method.

organism: Mus musculus

source_name: S727A STAT1 mouse fibroblasts, no interferon, siCdk8, replicate 3

growth_protocol: DMEM, 10% FCS, pen+strep

extract_protocol: Trizol

treatment_protocol: mouse interferon gamma, 10 ng/ml final concentration

tag: genotype/variation

value: S727A STAT1

tag: sirna

tag: agent

value: untreated

value: fibroblast

tag: replicate


title: SLAM Project Data: Synthetic Lethality with abp140

description:
Internal identifier for dataset: SL/100302/18
Original datafile name: 100302NG300007A02_532.pair
Original datafile2 name: 100302NG300007A02_635.pair
SD of values from reference genes: 0.375
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.44 2.02 2.43
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

tag: query gene

tag: knockout clone

value: Plate  well  (strain NA)

tag: genetic background

tag: pool genotype

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SA.CTR.0.R1

description: SAMPLE 22

source_name: S727A STAT1 mouse fibroblasts, no interferon, siCtrl, replicate 1

value: control siRNA


title: WT.CDK.0.R2

description: SAMPLE 20

source_name: WT STAT1 mouse fibroblasts, no interferon, siCdk8, replicate 2

value: WT STAT1


title: HeLa-mock

value: only transfection reagent (untreated)


title: SA.CTR.gamma.R2

description: SAMPLE 21

source_name: S727A STAT1 mouse fibroblasts, 4 h interferon, siCtrl, replicate 2

value: IFN-gamma


title: WT.CTR.0.R3

description: SAMPLE 18

source_name: WT STAT1 mouse fibroblasts, no interferon, siCtrl, replicate 3


title: SA.CDK.gamma.R1

description: SAMPLE 23

source_name: S727A STAT1 mouse fibroblasts, 4 h interferon, siCdk8, replicate 1


title: WT.CDK.gamma.R3

description: SAMPLE 19

source_name: WT STAT1 mouse fibroblasts, 4 h interferon, siCdk8, replicate 3


title: HeLa-control

value: 100nM siGENOME non-targeting siRNA Pool


title: HeLa-RYBP siRNA

value: 100nM siGENOME SMARTpool with RYBP siRNA


title: SLAM Project Data: Synthetic Lethality with ydr417c

description:
Internal identifier for dataset: SL/051006/9
Original datafile name: 051006_262_H09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.946
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.69 0.97 1.03
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: human primary osteoblasts HOB4

city: Torino

first: Raffaele

middle: A

last: Calogero

state: To

address: Via Nizza 52

department: Molecular Biotechnology Center

country: Italy

institute: University of Torino

description: human primary osteoblasts

hyb_protocol: Standard Illumina ibridization protocol

data_processing: data were analysed using BeadStudio version 1.5.1.3;  rank invariant normalization was performed

source_name: human primary osteoblasts

label_protocol: Biotilinated cRNA were prepared with the Ambion messageAmp for Illumina array

extract_protocol: Total RNA was extracted and purified from exponentially growing cells using the SV total RNA Isolation System (Promega,USA).

treatment_protocol: Exponentially growing cells were cultured for 48 hours in Iscove’s Modified Dulbecco Medium (Sigma, St. Louis, MO) supplemented with 1% Penicillin-Streptomycin-Amphotericin B Mixture (Lonza, Versviers Belgium), 1% L-Glutamine (Lonza, Versviers Belgium) and 10% Fetal Bovine Serum (Sigma, St. Louis, MO) at 37°C in humified 5% CO2 atmosphere.

value: osteoblasts

tag: sample type


title: SLAM Project Data: Synthetic Lethality with sps100-rep2

description:
Internal identifier for dataset: SL/070906/4.1
Original datafile name: 070906-NG-4-C-A01_532.pair
Original datafile2 name: 070906-NG-4-C-A01_635.pair
SD of values from reference genes: 0.375
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.08 2.23 2.34
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well C03 (strain 21967)


title: SLAM Project Data: Synthetic Lethality with ydr185c-rep2

description:
Internal identifier for dataset: SL/070906/3.2
Original datafile name: 070906-NG-3-B-A02_532.pair
Original datafile2 name: 070906-NG-3-B-A02_635.pair
SD of values from reference genes: 0.635
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.32 1.87 2.06
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well B09 (strain 23544)


title: human primary osteoblasts HOB3

description: human primary osteoblasts


title: SLAM Project Data: Synthetic Lethality with yel043w

description:
Internal identifier for dataset: SL/061129/8
Original datafile name: 061129_214_G06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.663
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.09 1.25 1.19
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 214 well G06 (strain 20284)


title: WT.CTR.gamma.R3

description: SAMPLE 16

source_name: WT STAT1 mouse fibroblasts, 4 h interferon, siCtrl, replicate 3

tag: strain


title: WT.CTR.gamma.R1

description: SAMPLE 17

source_name: WT STAT1 mouse fibroblasts, 4 h interferon, siCtrl, replicate 1


title: human primary osteoblasts HOB2

description: human primary osteoblasts


title: SLAM Project Data: Synthetic Lethality with rbg2

description:
Internal identifier for dataset: SL/070511/15
Original datafile name: 070511A03_1_B_532.pair
Original datafile2 name: 070511A03_1_B_635.pair
SD of values from reference genes: 0.425
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.35 2.44 2.64
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well D03 (strain 24803)


title: SLAM Project Data: Synthetic Lethality with yat2

description:
Internal identifier for dataset: SL/081119/4
Original datafile name: 081119_215_C03_4A.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.642
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.46 1.29 1.60
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well C03 (strain 20156)


title: SLAM Project Data: Synthetic Lethality with agx1

description:
Internal identifier for dataset: SL/100526/9
Original datafile name: 310049A01_532.pair
Original datafile2 name: 310049A01_635.pair
SD of values from reference genes: 0.345
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.09 1.89 2.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 237 well G05 (strain 25649)


title: SLAM Project Data: Synthetic Lethality with spl2

description:
Internal identifier for dataset: SL/070620/20
Original datafile name: 070621A04_NG116429_C_532.pair
Original datafile2 name: 070621A04_NG116429_C_635.pair
SD of values from reference genes: 0.338
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.49 2.52 2.81
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well B12 (strain 21964)


title: SLAM Project Data: Synthetic Lethality with gto1

description:
Internal identifier for dataset: SL/080425/2
Original datafile name: 080425_216_B09_2.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.392
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.05 2.13 2.50
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well B09 (strain 24784)


title: SLAM Project Data: Synthetic Lethality with yap3

description:
Internal identifier for dataset: SL/080925/6
Original datafile name: 080925_217_B02_6_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.549
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.42 1.66 1.78
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well B02 (strain 20954)


title: SLAM Project Data: Synthetic Lethality with plp1-rep2

description:
Internal identifier for dataset: SL/070906/2.4
Original datafile name: 070906-NG-2-B-A04_532.pair
Original datafile2 name: 070906-NG-2-B-A04_635.pair
SD of values from reference genes: 0.375
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.44 2.87 3.03
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well B07 (strain 23542)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with ybp2

description:
Internal identifier for dataset: SL/050907/15
Original datafile name: 050907_249_H12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.577
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.34 0.89 1.20
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 249 well H12 (strain 24427)


title: SLAM Project Data: Synthetic Lethality with vma22

description:
Internal identifier for dataset: SL/070711/7
Original datafile name: 070711_217_E09_7.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.465
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.50 1.24 1.59
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well E09 (strain 21888)


title: MET transformed HOB clones (C16)

description: MET transformed HOB clones

source_name: MET transformed HOB clones

value: stable transfected with MET oncogene

value: MET-HOB


title: WT.CTR.0.R2

description: SAMPLE 15

source_name: WT STAT1 mouse fibroblasts, no interferon, siCtrl, replicate 2

value: WT STAT1

value: control siRNA

value: untreated

value: fibroblast


title: SLAM Project Data: Synthetic Lethality with pex28-rep2

description:
Internal identifier for dataset: SL/070906/4.4
Original datafile name: 070906-NG-4-C-A04_532.pair
Original datafile2 name: 070906-NG-4-C-A04_635.pair
SD of values from reference genes: 0.519
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.47 1.88 1.99
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

source_name: Reference

value: Plate 218 well C08 (strain 22844)


title: SLAM Project Data: Synthetic Lethality with vik1-rep2

description:
Internal identifier for dataset: SL/041130/7.1
Original datafile name: 041130_VIK1_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.631
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): NA 1.64 1.91
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 210 well A06 (strain 21039)

source_name: Test


title: MET transformed HOB clones (C18)

description: MET transformed HOB clones


title: SLAM Project Data: Synthetic Lethality with ubp15

description:
Internal identifier for dataset: SL/041210/3
Original datafile name: 041210_206_D4.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.890
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.02 1.16 1.25
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 206 well D04 (strain 20892)


title: SLAM Project Data: Synthetic Lethality with nsg1

description:
Internal identifier for dataset: SL/070620/16
Original datafile name: 070621A04_NG110794_A_532.pair
Original datafile2 name: 070621A04_NG110794_A_635.pair
SD of values from reference genes: 0.324
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.60 2.32 2.27
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well B09 (strain 21961)


title: SLAM Project Data: Synthetic Lethality with hgh1

description:
Internal identifier for dataset: SL/070522/15
Original datafile name: 070522A03_NG1_532.pair
Original datafile2 name: 070522A03_NG1_635.pair
SD of values from reference genes: 0.462
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.26 2.51 2.67
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well E04 (strain 24817)


title: MET transformed HOB clones (C8)

description: MET transformed HOB clones


title: SLAM Project Data: Synthetic Lethality with ubc4

description:
Internal identifier for dataset: SL/050916/19
Original datafile name: 050916_257_E10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.828
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): NA 1.01 1.02
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 257 well E10 (strain 23219)


title: MET transformed HOB clones (C6)

description: MET transformed HOB clones


title: WT.CDK.0.R1

description: SAMPLE 13

source_name: WT STAT1 mouse fibroblasts, no interferon, siCdk8, replicate 1


title: WT.CDK.gamma.R2

description: SAMPLE 14

source_name: WT STAT1 mouse fibroblasts, 4 h interferon, siCdk8, replicate 2

value: IFN-gamma


title: SA.CTR.gamma.R1

description: SAMPLE 12

source_name: S727A STAT1 mouse fibroblasts, 4 h interferon, siCtrl, replicate 1

value: S727A STAT1


title: SLAM Project Data: Synthetic Lethality with dse2-rep2

description:
Internal identifier for dataset: SL/070906/4.3
Original datafile name: 070906-NG-4-C-A03_532.pair
Original datafile2 name: 070906-NG-4-C-A03_635.pair
SD of values from reference genes: 0.332
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.98 2.83 3.02
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well C05 (strain 22836)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SA.CTR.0.R3

description: SAMPLE 11

source_name: S727A STAT1 mouse fibroblasts, no interferon, siCtrl, replicate 3


title: SLAM Project Data: Synthetic Lethality with tof1-rep2

description:
Internal identifier for dataset: SL/050107/4
Original datafile name: 050103_207_A10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.946
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.47 1.25 1.20
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 207 well A10 (strain 21171)


title: SLAM Project Data: Synthetic Lethality with crh1

description:
Internal identifier for dataset: SL/070522/18
Original datafile name: 070522A02_NG2_532.pair
Original datafile2 name: 070522A02_NG2_635.pair
SD of values from reference genes: 0.285
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.56 4.02 4.64
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well E05 (strain 24819)


title: SLAM Project Data: Synthetic Lethality with tms1

description:
Internal identifier for dataset: SL/051012/4
Original datafile name: 051012_213_A05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 1.010
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.99 1.06 1.05
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 213 well A05 (strain 24040)


title: human primary osteoblasts HOB1

description: human primary osteoblasts

value: osteoblasts


title: SLAM Project Data: Synthetic Lethality with chs7-rep2

description:
Internal identifier for dataset: SL/070906/4.2
Original datafile name: 070906-NG-4-C-A02_532.pair
Original datafile2 name: 070906-NG-4-C-A02_635.pair
SD of values from reference genes: 0.326
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.69 3.07 3.22
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well C04 (strain 22835)


title: MET transformed HOB clones (C42DN)

description: MET transformed HOB clones

value: stable transfected with wt and DominatNegative MET oncogene


title: SLAM Project Data: Synthetic Lethality with ste20

description:
Internal identifier for dataset: SL/080925/8
Original datafile name: 080925_217_B04_8_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.675
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.30 1.28 1.42
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well B04 (strain 20956)


title: SLAM Project Data: Synthetic Lethality with tir1

description:
Internal identifier for dataset: SL/081007/5
Original datafile name: 081007_215_B02_5_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.772
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.56 1.23 1.18
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well B02 (strain 20333)


title: SLAM Project Data: Synthetic Lethality with cbp4

description:
Internal identifier for dataset: SL/070511/16
Original datafile name: 070511A04_1_B_532.pair
Original datafile2 name: 070511A04_1_B_635.pair
SD of values from reference genes: 0.397
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.43 3.00 2.89
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well D04 (strain 24804)


title: SA.CDK.0.R2

description: SAMPLE 9

source_name: S727A STAT1 mouse fibroblasts, no interferon, siCdk8, replicate 2

value: untreated

value: fibroblast


title: SLAM Project Data: Synthetic Lethality with zrt3

description:
Internal identifier for dataset: SL/090811/24
Original datafile name: 090811NG264515A04_532.pair
Original datafile2 name: 090811NG264515A04_635.pair
SD of values from reference genes: 0.284
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.58 2.88 2.89
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well C03 (strain 25025)


title: MET transformed HOB clones (C12DN)

description: MET transformed HOB clones


title: SA.CDK.0.R1

description: SAMPLE 7

source_name: S727A STAT1 mouse fibroblasts, no interferon, siCdk8, replicate 1


title: MET transformed HOB clones (C42)

description: MET transformed HOB clones

value: stable transfected with MET oncogene

value: MET-HOB


title: SLAM Project Data: Synthetic Lethality with ssk1

description:
Internal identifier for dataset: SL/050916/21
Original datafile name: 050916_262_C01.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.623
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.64 0.84 1.00
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 262 well C01 (strain 21561)


title: SA.CDK.gamma.R2

description: SAMPLE 8

source_name: S727A STAT1 mouse fibroblasts, 4 h interferon, siCdk8, replicate 2

value: S727A STAT1

value: IFN-gamma


title: SA.CTR.gamma.R3

description: SAMPLE 6

source_name: S727A STAT1 mouse fibroblasts, 4 h interferon, siCtrl, replicate 3

value: control siRNA


title: SLAM Project Data: Synthetic Lethality with zrt2

description:
Internal identifier for dataset: SL/090331/10
Original datafile name: 090331NG142632BA02_532.pair
Original datafile2 name: 090331NG142632BA02_635.pair
SD of values from reference genes: 0.443
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.80 2.31 2.16
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 219 well E07 (strain 24087)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with zip2

description:
Internal identifier for dataset: SL/100407/17
Original datafile name: 308441A01_532.pair
Original datafile2 name: 308441A01_635.pair
SD of values from reference genes: 0.705
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.22 0.83 1.11
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 229 well A10 (strain 24616)


title: SLAM Project Data: Synthetic Lethality with spo7

description:
Internal identifier for dataset: SL/040228/3
Original datafile name: 201E5a_1228_635_nm.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.398
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): NA 0.72 1.19
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 201 well E05 (strain 20399)


title: SA.CTR.0.R2

description: SAMPLE 5

source_name: S727A STAT1 mouse fibroblasts, no interferon, siCtrl, replicate 2


title: human primary osteoblasts HOB6

description: human primary osteoblasts

value: osteoblasts


title: MET transformed HOB clones (C12)

description: MET transformed HOB clones


title: SLAM Project Data: Synthetic Lethality with spo13

description:
Internal identifier for dataset: SL/081007/10
Original datafile name: 081007_217_C02_10_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.686
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.34 1.46 1.59
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well C02 (strain 20977)


title: SLAM Project Data: Synthetic Lethality with zip1

description:
Internal identifier for dataset: SL/100504/18
Original datafile name: 308298A02_532.pair
Original datafile2 name: 308298A02_635.pair
SD of values from reference genes: 0.487
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.26 1.67 1.67
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well D12 (strain 23644)


title: MET transformed HOB clones (C15)

description: MET transformed HOB clones


title: WT.CDK.gamma.R1

description: SAMPLE 4

source_name: WT STAT1 mouse fibroblasts, 4 h interferon, siCdk8, replicate 1

value: WT STAT1


title: WT.CDK.0.R3

description: SAMPLE 3

source_name: WT STAT1 mouse fibroblasts, no interferon, siCdk8, replicate 3

value: untreated


title: SLAM Project Data: Synthetic Lethality with spo11

description:
Internal identifier for dataset: SL/080923/6.1
Original datafile name: 080923_217_A03_6_f8.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.546
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.48 1.61 1.75
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well A03 (strain 20941)


title: SLAM Project Data: Synthetic Lethality with zeo1

description:
Internal identifier for dataset: SL/100604/17
Original datafile name: 308124A01_532.pair
Original datafile2 name: 308124A01_635.pair
SD of values from reference genes: 0.245
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.01 1.45 2.93
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 239 well G06 (strain 26259)