title: SLAM Project Data: Synthetic Lethality with yhr177w

description:
Internal identifier for dataset: SL/081121/11
Original datafile name: 081121A03_142176_3_532.pair
Original datafile2 name: 081121A03_142176_3_635.pair
SD of values from reference genes: 0.345
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.01 3.35 3.29
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well E01 (strain 22871)


title: SLAM Project Data: Synthetic Lethality with get2

status: Public on Feb 28 2013

type: genomic

city: Baltimore

first: Jef

last: Boeke

address: 733 N BROADWAY # 339

country: USA

institute: Johns Hopkins U

description:
Internal identifier for dataset: SL/070130/10
Original datafile name: 070130_215_G09_10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.452
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.78 2.20 2.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

hyb_protocol: Labeled extracts were hybridized overnight to Agilent 22k microarray slides at 42 degrees C.

scan_protocol: Images were acquired with a GenePix 4000B or 4200 AL scanner at 10 um resolution.

data_processing: Two-channel image files were analyzed with the GenePix Pro software package (Molecular Dynamics, version 5.1 or higher). Annotations were reconstructed from data downloaded from the Saccharomyces Genome Database on 2008-11-15. Numerical data were obtained as the median of foreground signal intensities. Background signal intensities were not used. Custom R packages (hoptag v3.9-7; hoptagInfo02A v3.9-6) were used with their default options. See the software and PDF documentation included with this GEO Series submission for details. The VALUE column represents a dynamically weighted sum of data from the UpTag and DnTag probes for each gene.

molecule: genomic DNA

organism: Saccharomyces cerevisiae

source_name: Reference

label_protocol: UpTag and DnTag sequences were amplified from genomic DNA by asymmetric PCR using labeled primers.

growth_protocol: Cells were grown at 30 degrees C for approximately eight doublings using "Magic Marker" selectable medium supplemented with uracil.

extract_protocol: Genomic DNA was extracted by phenol extraction or by use of proprietary kits (e.g., Epicentre, Norgen).

tag: query gene

tag: knockout clone

value: Plate 215 well G09 (strain 20223)

tag: genetic background

tag: pool genotype

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX

source_name: Test

growth_protocol: Cells were grown without added uracil, using materials and procedures that were otherwise the same as those for Channel 1.


title: SLAM Project Data: Synthetic Lethality with gdt1

description:
Internal identifier for dataset: SL/050928/11
Original datafile name: 050928_211_F12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.420
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.83 1.60 2.20
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well F12 (strain 23327)


title: SLAM Project Data: Synthetic Lethality with yhr177w-rep2

description:
Internal identifier for dataset: SL/090217/14
Original datafile name: 090217NG142281A02_532.pair
Original datafile2 name: 090217NG142281A02_635.pair
SD of values from reference genes: 0.299
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.08 3.13 3.13
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

hyb_protocol: Labeled extracts were hybridized overnight to NimbleGen 72k 4-plex microarray slides at 42 degrees C.

scan_protocol: Images were acquired with a GenePix 4200AL scanner at 5 um resolution or an Agilent G2505C scanner at 2 um resolution

data_processing: Two-channel image files were analyzed with the NimbleScan software package (Roche NimbleGen, version 2.3.78 or higher). Annotations were reconstructed from data downloaded from the Saccharomyces Genome Database on 2008-11-15. Numerical data were obtained as the mean of the central pixels. Background signal intensities were not used. Custom R packages (hoptag v3.9-7; hoptagInfo07A v3.9-6) were used with their default options. See the software and PDF documentation included with this GEO Series submission for details. The VALUE column represents a dynamically weighted sum of data from the UpTag and DnTag probes for each gene.


title: SLAM Project Data: Synthetic Lethality with yhr162w

description:
Internal identifier for dataset: SL/100617/11
Original datafile name: 308386A03_532.pair
Original datafile2 name: 308386A03_635.pair
SD of values from reference genes: 0.897
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.05 0.88 1.06
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 240 well D02 (strain 26416)


title: SLAM Project Data: Synthetic Lethality with gem1

description:
Internal identifier for dataset: SL/040212/4
Original datafile name: 9.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.582
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.89 1.26 1.34
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 201 well B04 (strain 20357)


title: SLAM Project Data: Synthetic Lethality with yhr159w

description:
Internal identifier for dataset: SL/090224/9
Original datafile name: 090224NG142340A01_532.pair
Original datafile2 name: 090224NG142340A01_635.pair
SD of values from reference genes: 0.359
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.40 1.98 2.02
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well D05 (strain 22853)


title: SLAM Project Data: Synthetic Lethality with yhr138c-rep2

description:
Internal identifier for dataset: SL/090402/21
Original datafile name: 090402NG142645A01_532.pair
Original datafile2 name: 090402NG142645A01_635.pair
SD of values from reference genes: 0.271
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.79 2.82 2.72
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well C02 (strain 21966)


title: SLAM Project Data: Synthetic Lethality with yhr140w

description:
Internal identifier for dataset: SL/100617/10
Original datafile name: 308386A02_532.pair
Original datafile2 name: 308386A02_635.pair
SD of values from reference genes: 0.475
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.94 2.04 2.12
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 240 well D01 (strain 26415)


title: SLAM Project Data: Synthetic Lethality with yhr125w

description:
Internal identifier for dataset: SL/090217/8
Original datafile name: 090217NG142279A04_532.pair
Original datafile2 name: 090217NG142279A04_635.pair
SD of values from reference genes: 0.316
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.73 3.01 3.18
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well B04 (strain 21953)


title: SLAM Project Data: Synthetic Lethality with yjl135w

description:
Internal identifier for dataset: SL/100317/13
Original datafile name: 100317NG300298A01_532.pair
Original datafile2 name: 100317NG300298A01_635.pair
SD of values from reference genes: 0.271
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.27 2.75 3.41
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 225 well F03 (strain 21290)


title: SLAM Project Data: Synthetic Lethality with yhr130c-rep2

description:
Internal identifier for dataset: SL/090217/11
Original datafile name: 090217NG142280A03_532.pair
Original datafile2 name: 090217NG142280A03_635.pair
SD of values from reference genes: 0.289
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.66 4.02 3.93
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well B07 (strain 21958)


title: Human heart adult 1

type: RNA

city: Shanghai

first: Zhao

last: Guodong

address: Yueyang Road

country: China

institute: PICB

description: Gene expression of Human heart adult 1

hyb_protocol: Hybridization to Affymetrix® Human Exon 1.0 ST arrays was carried out following standard Affymetrix protocols.

scan_protocol: Affymetrix Gene ChIP Scanner 3000 7G

data_processing:
We firstly mapped probes in Human Exon 1.0 ST Chip to human genome (hg18), chimpanzee genome (panTro2.1) and rhesus macaque genome (MMUL1.0) separately by using Bowtie [36]. And then we masked out probes that could not match perfectly and uniquely any of the respective genome. To exclude those probes with signal intensities below background noise, we compared each probe’s intensity to the distribution of anti-genomic probes’ intensities with the same GC content (the latter are designed to detect non-specific hybridization). A “detectable” probe was defined as one with intensity larger than 95% percentile of the anti-genomic probes’ intensities (comparing only to those anti-genomic probes with the same GC content). Detectable probe intensity values were log2 transformed and quantile normalized. If a transcript had both more than 80% probes and more than 10 probes detected, we likewise called this a detectable transcript.
probe group file: HuEx-1_0-st-v2.r2.pgf
meta-probeset file: HuEx-1_0-st-v2.r2.all.ps

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: Dissected human post-mortem heart

label_protocol: Biotinylated cRNA were prepared from 2 microg. total RNA following standard Affymetrix protocols.

extract_protocol: Trizol extraction of total RNA from 100 mg of tissue was performed according to the manufacturer's instructions.

treatment_protocol: All human postmortem tissue samples were obtained from the NICHD Brain and Tissue Bank for Developmental Disorders (NICHDBB)(Baltimore, MD, USA). All subjects were defined as normal controls by forensic pathologists at the NICHDBB. No subjects with prolonged agonal state were used. Chimpanzee samples were obtained from the Yerkes Primate Center (Atlanta, GA, USA), from the Biomedical Primate Research Centre (Rijswijk, Netherlands) and from the Anthropological Institute of the University of Zurich (Switzerland).

tag: tissue

value: heart


title: SLAM Project Data: Synthetic Lethality with yhr130c

description:
Internal identifier for dataset: SL/081121/10
Original datafile name: 081121A02_142176_3_532.pair
Original datafile2 name: 081121A02_142176_3_635.pair
SD of values from reference genes: 0.298
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.49 4.88 4.26
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with yhr032w

description:
Internal identifier for dataset: SL/100617/7
Original datafile name: 308385A03_532.pair
Original datafile2 name: 308385A03_635.pair
SD of values from reference genes: 0.428
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.21 1.71 2.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 240 well C10 (strain 26412)


title: SLAM Project Data: Synthetic Lethality with gal80

description:
Internal identifier for dataset: SL/041110/5
Original datafile name: 041110_203_G11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.511
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.19 1.30 2.16
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 203 well G11 (strain 20520)


title: SLAM Project Data: Synthetic Lethality with gat3

description:
Internal identifier for dataset: SL/050519/5
Original datafile name: 050519_202_E08.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.530
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.66 1.52 1.73
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 202 well E08 (strain 21568)


title: SLAM Project Data: Synthetic Lethality with gas5

description:
Internal identifier for dataset: SL/050506/2.1
Original datafile name: 050506_209_C04_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.428
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.83 2.05 2.32
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well C04 (strain 21721)


title: SLAM Project Data: Synthetic Lethality with gal2

description:
Internal identifier for dataset: SL/041117/2
Original datafile name: 041117_203_B3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.730
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.99 0.70 1.09
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 203 well B03 (strain 22692)


title: SLAM Project Data: Synthetic Lethality with gal4

description:
Internal identifier for dataset: SL/050628/20
Original datafile name: 050628_210_A12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.506
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.42 1.03 1.51
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 210 well A12 (strain 21044)


title: SLAM Project Data: Synthetic Lethality with ygr266w

description:
Internal identifier for dataset: SL/100526/11
Original datafile name: 310049A03_532.pair
Original datafile2 name: 310049A03_635.pair
SD of values from reference genes: 0.401
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.86 1.88 2.14
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 238 well D07 (strain 25918)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with fyv8

description:
Internal identifier for dataset: SL/070522/8.1
Original datafile name: 070522_216_E12_8_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.310
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.79 1.67 1.93
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well E12 (strain 24826)


title: SLAM Project Data: Synthetic Lethality with ygr210c

description:
Internal identifier for dataset: SL/100617/4
Original datafile name: 308376A04_532.pair
Original datafile2 name: 308376A04_635.pair
SD of values from reference genes: 0.273
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.76 2.85 2.98
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 240 well C05 (strain 26407)


title: SLAM Project Data: Synthetic Lethality with gdh1

description:
Internal identifier for dataset: SL/050405/5
Original datafile name: 050405_208H1.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.379
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.38 1.91 2.19
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well H01 (strain 21672)


title: SLAM Project Data: Synthetic Lethality with fth1

description:
Internal identifier for dataset: SL/050923/7
Original datafile name: 050923_211_H05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.443
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.60 1.54 2.05
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well H05 (strain 23347)


title: SLAM Project Data: Synthetic Lethality with ygr237c

description:
Internal identifier for dataset: SL/100427/6
Original datafile name: 310124A02_532.pair
Original datafile2 name: 310124A02_635.pair
SD of values from reference genes: 0.384
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.85 2.15 2.36
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well C12 (strain 25890)


title: SLAM Project Data: Synthetic Lethality with fus2

description:
Internal identifier for dataset: SL/050623/20
Original datafile name: 050623_205_G01.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.482
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.94 1.50 1.54
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well G01 (strain 20818)


title: SLAM Project Data: Synthetic Lethality with gda1

description:
Internal identifier for dataset: SL/061129/7
Original datafile name: 061129_214_G05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.630
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.11 1.76 1.64
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 214 well G05 (strain 20283)


title: SLAM Project Data: Synthetic Lethality with gde1

description:
Internal identifier for dataset: SL/050713/7.1
Original datafile name: 050713_211_D09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.459
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.96 1.50 1.64
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well D09 (strain 22142)


title: SLAM Project Data: Synthetic Lethality with ygr242w

description:
Internal identifier for dataset: SL/100427/9
Original datafile name: 310131A01_532.pair
Original datafile2 name: 310131A01_635.pair
SD of values from reference genes: 0.322
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.40 2.29 2.65
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well D03 (strain 25895)


title: SLAM Project Data: Synthetic Lethality with ygr243w

description:
Internal identifier for dataset: SL/100427/10
Original datafile name: 310131A02_532.pair
Original datafile2 name: 310131A02_635.pair
SD of values from reference genes: 0.335
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.45 1.99 2.44
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well D04 (strain 25896)


title: SLAM Project Data: Synthetic Lethality with fum1-rep2

description:
Internal identifier for dataset: SL/050517/15
Original datafile name: 050517_209_H09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.475
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.68 2.37 2.36
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well H09 (strain 21030)


title: SLAM Project Data: Synthetic Lethality with fmp52

description:
Internal identifier for dataset: SL/070629/9
Original datafile name: 070629_215_A07_9.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.708
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.04 1.17 1.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well A07 (strain 20325)


title: SLAM Project Data: Synthetic Lethality with ygr122w

description:
Internal identifier for dataset: SL/091029/8
Original datafile name: 091029NG300005A04_532.pair
Original datafile2 name: 091029NG300005A04_635.pair
SD of values from reference genes: 0.440
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.00 2.00 2.13
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 223 well B12 (strain 24752)


title: SLAM Project Data: Synthetic Lethality with gds1

description:
Internal identifier for dataset: SL/050429/6
Original datafile name: 050429_208_F07.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.403
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.55 2.00 2.15
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well F07 (strain 21652)


title: SLAM Project Data: Synthetic Lethality with ygr269w

description:
Internal identifier for dataset: SL/100526/12
Original datafile name: 310049A04_532.pair
Original datafile2 name: 310049A04_635.pair
SD of values from reference genes: 0.354
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.42 2.38 2.57
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 238 well D10 (strain 25921)


title: SLAM Project Data: Synthetic Lethality with yhr045w

description:
Internal identifier for dataset: SL/100617/8
Original datafile name: 308385A04_532.pair
Original datafile2 name: 308385A04_635.pair
SD of values from reference genes: 0.328
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.63 2.32 2.66
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 240 well C11 (strain 26413)


title: WT_left hippocampi_TFC_rep1

city: Hualien

first: Ingrid

last: Liu

address: E411, 701, Section 3 Chung Yang Road

department: Molecular Biology and Human Genetics

country: Taiwan

institute: Tzu Chi University

description:
S1_1
Sacrificed immediately after retrieval contextual memory.

hyb_protocol: Phalanx Mouse One Array (MOA) v1.1 arrays were pre-heated at 60℃ for 10 mins, and rehydrated by 100% ethanol followed by deionized water. The slides were pre-hybridized with 5x SSPE, 0.1% SDS and 1% BSA at 42℃ for 2 hours. After the pre-hybridization, 5 µg Cy5-labeled aRNA was hybridized on MOA in duplicate in Phalanx OneArray hybridization buffer.

scan_protocol: The arrays were scanned by an Axon GenePix 4000B scanner (635nm power 100 PMT 550~570 ; 532nm power 10, PMT 460), and the fluoresence intensities were quantified.

data_processing:
The raw intensity was filtered (SNR>5), and normalized by the quantile normalization method using Matlab.
The average ratios of the hybridization replicates were calculated and the significant values for each gene were found by pairwise comparision (Ranking and hypothesis testing).

organism: Mus musculus

source_name: left hippocampus, WT, TFC

label_protocol: 2.5 µg of total RNA was reverse-transcribed and amplified using the MessageAmp aRNA Amplification Kit (Ambion).  Indirect labeling the aa-UTP whereon by NHS-CyDye (Cy5, Amersham).

growth_protocol: Animals were housed individually in plastic and metal cages with ad libitum access to food and water under a constant 12hr light/dark cycle.

extract_protocol: Total RNA extraction by Trizol. RNA purity was checked by optical density of NanoDrop ND-1000 and agarose electrophoresis with the result of A260/A280≧1.8, no gDNA contamination. RNA integrity was measured by Agilent RNA 6000 Nano Assay (RIN≧8).

treatment_protocol: All mice were trained and tested between 6 and 8 weeks old. WT and Cav3.2 KO mice were divided into naïve and TFC groups with 3 animals in each group. After contextual fear conditioning, all groups were sacrificed immediately and bilateral hippocampi were dissected.

tag: background/strain

tag: genotype

value: wild type

value: left hippocampus

tag: age

value: 6-8 weeks

tag: Sex

value: male

tag: treatment

value: TFC


title: SLAM Project Data: Synthetic Lethality with frt1

description:
Internal identifier for dataset: SL/050513/2
Original datafile name: 050513_208_D06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.462
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.28 1.41 1.59
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well D06 (strain 21621)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with flc2

description:
Internal identifier for dataset: SL/040212/1
Original datafile name: 5a.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.562
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.97 0.95 1.21
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 201 well B01 (strain 20354)


title: SLAM Project Data: Synthetic Lethality with yhr112c-rep2

description:
Internal identifier for dataset: SL/081113/10
Original datafile name: 081113_142170A02_S01_532.pair
Original datafile2 name: 081113_142170A02_S01_635.pair
SD of values from reference genes: 0.386
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.18 3.02 2.73
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well A04 (strain 21940)


title: SLAM Project Data: Synthetic Lethality with fum1

description:
Internal identifier for dataset: SL/050616/10
Original datafile name: 050616_209_H09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.352
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.14 2.51 2.88
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with ygr290w

description:
Internal identifier for dataset: SL/100616/9
Original datafile name: 308134A01_532.pair
Original datafile2 name: 308134A01_635.pair
SD of values from reference genes: 0.549
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.72 1.45 1.79
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 238 well F02 (strain 25942)


title: SLAM Project Data: Synthetic Lethality with fsh2

description:
Internal identifier for dataset: SL/050623/15
Original datafile name: 050623_205_F03.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.472
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.21 1.27 1.33
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well F03 (strain 20808)


title: SLAM Project Data: Synthetic Lethality with ygr079w

description:
Internal identifier for dataset: SL/090728/23
Original datafile name: 090728NG129579A03_532.pair
Original datafile2 name: 090728NG129579A03_635.pair
SD of values from reference genes: 0.300
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.52 3.60 3.54
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well H02 (strain 24709)


title: SLAM Project Data: Synthetic Lethality with fsh1

description:
Internal identifier for dataset: SL/070711/2
Original datafile name: 070711_217_E04_2.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.382
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.17 2.29 2.53
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well E04 (strain 21876)


title: SLAM Project Data: Synthetic Lethality with fre5

description:
Internal identifier for dataset: SL/050505/4
Original datafile name: 050505_208_H10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.294
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.43 2.70 3.25
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well H10 (strain 21681)


title: SLAM Project Data: Synthetic Lethality with fra1

description:
Internal identifier for dataset: SL/050517/6
Original datafile name: 050517_202_B03.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.502
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.56 1.87 2.00
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 202 well B03 (strain 21517)


title: SLAM Project Data: Synthetic Lethality with fmp30

description:
Internal identifier for dataset: SL/050927/4
Original datafile name: 050927_211_E04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.581
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.66 1.27 1.31
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well E04 (strain 22149)


title: SLAM Project Data: Synthetic Lethality with fob1

description:
Internal identifier for dataset: SL/051012/8
Original datafile name: 051012_213_A09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.470
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.67 1.62 1.81
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 213 well A09 (strain 24044)


title: SLAM Project Data: Synthetic Lethality with ygr069w

description:
Internal identifier for dataset: SL/090728/19
Original datafile name: 090728NG129578A03_532.pair
Original datafile2 name: 090728NG129578A03_635.pair
SD of values from reference genes: 0.365
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.32 3.05 3.25
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well G04 (strain 24699)


title: SLAM Project Data: Synthetic Lethality with ygr067c

description:
Internal identifier for dataset: SL/090728/18
Original datafile name: 090728NG129578A02_532.pair
Original datafile2 name: 090728NG129578A02_635.pair
SD of values from reference genes: 0.627
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.20 2.26 2.32
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well G02 (strain 24697)


title: SLAM Project Data: Synthetic Lethality with ygr066c

description:
Internal identifier for dataset: SL/090728/17
Original datafile name: 090728NG129578A01_532.pair
Original datafile2 name: 090728NG129578A01_635.pair
SD of values from reference genes: 0.399
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.71 2.73 2.93
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well G01 (strain 24696)


title: SLAM Project Data: Synthetic Lethality with ygr107w

description:
Internal identifier for dataset: SL/091029/1
Original datafile name: 091029NG300004A01_532.pair
Original datafile2 name: 091029NG300004A01_635.pair
SD of values from reference genes: 0.340
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.76 2.69 3.10
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 223 well A12 (strain 24737)


title: SLAM Project Data: Synthetic Lethality with ygr054w

description:
Internal identifier for dataset: SL/090728/5
Original datafile name: 090728NG129695A01_532.pair
Original datafile2 name: 090728NG129695A01_635.pair
SD of values from reference genes: 0.369
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.93 2.54 2.99
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well F02 (strain 24684)


title: SLAM Project Data: Synthetic Lethality with fin1-rep2

description:
Internal identifier for dataset: SL/051103/1.1
Original datafile name: 2005-11-03_213_C06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.487
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.74 1.76 1.93
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 213 well C06 (strain 24064)


title: SLAM Project Data: Synthetic Lethality with ygr102c

description:
Internal identifier for dataset: SL/091103/19
Original datafile name: 091103NG301653A03_532.pair
Original datafile2 name: 091103NG301653A03_635.pair
SD of values from reference genes: 0.621
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.43 1.68 1.64
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 223 well A08 (strain 24732)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with fit3

description:
Internal identifier for dataset: SL/050505/3
Original datafile name: 050505_208_H09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.317
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.16 2.66 2.87
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well H09 (strain 21680)


title: SLAM Project Data: Synthetic Lethality with ygr064w

description:
Internal identifier for dataset: SL/090728/16
Original datafile name: 090728NG129574A04_532.pair
Original datafile2 name: 090728NG129574A04_635.pair
SD of values from reference genes: 0.293
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.28 2.86 2.66
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well F11 (strain 24694)


title: SLAM Project Data: Synthetic Lethality with fin1

description:
Internal identifier for dataset: SL/050909/4
Original datafile name: 050909_213_C06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.571
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.17 0.93 1.34
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with fit2

description:
Internal identifier for dataset: SL/050505/2
Original datafile name: 050505_208_H08.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.417
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.75 2.08 2.16
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well H08 (strain 21679)


title: SLAM Project Data: Synthetic Lethality with ygr042w

description:
Internal identifier for dataset: SL/090717/6
Original datafile name: 090717NG129685A02_532.pair
Original datafile2 name: 090717NG129685A02_635.pair
SD of values from reference genes: 0.416
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.65 2.40 2.69
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well E06 (strain 24672)


title: SLAM Project Data: Synthetic Lethality with ygl262w

description:
Internal identifier for dataset: SL/100407/24
Original datafile name: 308476A04_532.pair
Original datafile2 name: 308476A04_635.pair
SD of values from reference genes: 0.498
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.70 1.27 1.66
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 229 well B11 (strain 24629)


title: SLAM Project Data: Synthetic Lethality with ygl231c

description:
Internal identifier for dataset: SL/100324/24
Original datafile name: 100324NG300526A04_532.pair
Original datafile2 name: 100324NG300526A04_635.pair
SD of values from reference genes: 0.505
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.64 1.44 1.77
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 226 well H06 (strain 24598)


title: SLAM Project Data: Synthetic Lethality with fcy21

description:
Internal identifier for dataset: SL/070112/9
Original datafile name: 070112_215_E12_9.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.627
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.70 1.58 1.74
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well E12 (strain 20196)


title: SLAM Project Data: Synthetic Lethality with esc2-rep3

description:
Internal identifier for dataset: SL/050729/2.1
Original datafile name: 050729_213_F09_OS.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.323
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.29 2.81 3.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 213 well F09 (strain 24200)


title: SLAM Project Data: Synthetic Lethality with ygl230c

description:
Internal identifier for dataset: SL/100202/13
Original datafile name: 100202NG261125A01_532.pair
Original datafile2 name: 100202NG261125A01_635.pair
SD of values from reference genes: 0.422
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.48 1.68 2.30
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 226 well H05 (strain 24597)


title: SLAM Project Data: Synthetic Lethality with ygr035c

description:
Internal identifier for dataset: SL/090707/11
Original datafile name: 090707NG129683A03_532.pair
Original datafile2 name: 090707NG129683A03_635.pair
SD of values from reference genes: 0.528
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.49 2.36 2.06
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well E01 (strain 24665)


title: SLAM Project Data: Synthetic Lethality with ygr051c

description:
Internal identifier for dataset: SL/090728/2
Original datafile name: 090728NG129694A02_532.pair
Original datafile2 name: 090728NG129694A02_635.pair
SD of values from reference genes: 0.425
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.53 2.82 2.92
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well E12 (strain 24681)


title: SLAM Project Data: Synthetic Lethality with esc8

description:
Internal identifier for dataset: SL/050510/3
Original datafile name: 050510_209_B04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.736
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.00 1.05 1.24
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well B04 (strain 21708)


title: SLAM Project Data: Synthetic Lethality with ygr012w

description:
Internal identifier for dataset: SL/100413/6
Original datafile name: 308481A02_532.pair
Original datafile2 name: 308481A02_635.pair
SD of values from reference genes: 0.500
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.48 1.58 1.79
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 229 well C12 (strain 24642)


title: SLAM Project Data: Synthetic Lethality with ygl260w

description:
Internal identifier for dataset: SL/100407/22
Original datafile name: 308476A02_532.pair
Original datafile2 name: 308476A02_635.pair
SD of values from reference genes: 0.381
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.03 1.94 2.19
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 229 well B09 (strain 24627)


title: SLAM Project Data: Synthetic Lethality with fcy2

description:
Internal identifier for dataset: SL/070112/4
Original datafile name: 070112_215_E08_4.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.315
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.90 3.05 3.48
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well E08 (strain 20191)


title: SLAM Project Data: Synthetic Lethality with yfr054c

description:
Internal identifier for dataset: SL/100421/22
Original datafile name: 310118A02_532.pair
Original datafile2 name: 310118A02_635.pair
SD of values from reference genes: 0.451
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.59 1.59 1.83
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well B01 (strain 25868)


title: SLAM Project Data: Synthetic Lethality with exo1

description:
Internal identifier for dataset: SL/050504/1
Original datafile name: 050504_207_E12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.579
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.22 1.66 1.75
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 207 well E12 (strain 21809)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with erv25

description:
Internal identifier for dataset: SL/050526/16
Original datafile name: 050526_204_B04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.384
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.04 2.97 2.92
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 204 well B04 (strain 20562)


title: SLAM Project Data: Synthetic Lethality with exo1-rep2

description:
Internal identifier for dataset: SL/050422/4
Original datafile name: 050422_207_E12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.614
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.45 1.46 1.86
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with ygr022c

description:
Internal identifier for dataset: SL/090414/1
Original datafile name: 090414NG142646A01_532.pair
Original datafile2 name: 090414NG142646A01_635.pair
SD of values from reference genes: 0.407
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.11 2.49 2.65
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate  well  (strain NA)


title: SLAM Project Data: Synthetic Lethality with esc2

description:
Internal identifier for dataset: SL/051103/5.1
Original datafile name: 2005-11-03_213_F09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.264
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.51 2.88 3.22
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with yfr056c

description:
Internal identifier for dataset: SL/100421/24
Original datafile name: 310118A04_532.pair
Original datafile2 name: 310118A04_635.pair
SD of values from reference genes: 0.377
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.14 2.03 2.31
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well B03 (strain 25870)


title: SLAM Project Data: Synthetic Lethality with yfr045w

description:
Internal identifier for dataset: SL/100421/16
Original datafile name: 310110A04_532.pair
Original datafile2 name: 310110A04_635.pair
SD of values from reference genes: 0.361
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.12 1.72 2.15
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with ygr031w

description:
Internal identifier for dataset: SL/090609/7
Original datafile name: 090609NG129647A03_532.pair
Original datafile2 name: 090609NG129647A03_635.pair
SD of values from reference genes: 0.384
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.45 3.07 2.87
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well D10 (strain 24661)


title: SLAM Project Data: Synthetic Lethality with esc2-rep2

description:
Internal identifier for dataset: SL/060521/8
Original datafile name: 060521_213_F09_first.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.576
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.37 1.34 1.64
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with fcy22

description:
Internal identifier for dataset: SL/070112/10
Original datafile name: 070112_215_F01_10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.492
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.22 2.60 2.60
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well F01 (strain 20197)


title: SLAM Project Data: Synthetic Lethality with ygl034c

description:
Internal identifier for dataset: SL/100428/14
Original datafile name: 308077A02_532.pair
Original datafile2 name: 308077A02_635.pair
SD of values from reference genes: 0.621
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.35 1.09 1.39
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 233 well G01 (strain 24402)


title: SLAM Project Data: Synthetic Lethality with ygk3

description:
Internal identifier for dataset: SL/100603/14
Original datafile name: 310227A02_532.pair
Original datafile2 name: 310227A02_635.pair
SD of values from reference genes: 0.342
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.20 2.25 2.56
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 239 well H12 (strain 26278)


title: SLAM Project Data: Synthetic Lethality with erp5

description:
Internal identifier for dataset: SL/061103/3
Original datafile name: 061103_218_A02_N.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.518
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.28 1.74 1.88
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well A02 (strain 21938)


title: SLAM Project Data: Synthetic Lethality with erv15

description:
Internal identifier for dataset: SL/050923/8
Original datafile name: 050923_211_H07.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.526
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.49 1.54 2.01
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well H07 (strain 23350)


title: SLAM Project Data: Synthetic Lethality with erp4

description:
Internal identifier for dataset: SL/050107/7.1
Original datafile name: 050106_207_D8.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.541
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.35 1.94 1.98
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 207 well D08 (strain 21792)


title: SLAM Project Data: Synthetic Lethality with yfr032c

description:
Internal identifier for dataset: SL/100526/18
Original datafile name: 310062A02_532.pair
Original datafile2 name: 310062A02_635.pair
SD of values from reference genes: 0.314
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): NA 2.01 2.01
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 231 well H02 (strain 25845)


title: SLAM Project Data: Synthetic Lethality with erg6

description:
Internal identifier for dataset: SL/050526/20
Original datafile name: 050526_204_B09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.373
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.71 2.88 2.85
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 204 well B09 (strain 20568)


title: SLAM Project Data: Synthetic Lethality with yfr032c-rep2

description:
Internal identifier for dataset: SL/100421/6
Original datafile name: 310092A02_532.pair
Original datafile2 name: 310092A02_635.pair
SD of values from reference genes: 0.358
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.71 1.91 1.98
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with erp2

description:
Internal identifier for dataset: SL/040228/5
Original datafile name: 201E7a_1308_635_nm.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.362
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.67 1.06 1.20
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 201 well E07 (strain 20401)


title: SLAM Project Data: Synthetic Lethality with yfr035c

description:
Internal identifier for dataset: SL/100421/10
Original datafile name: 310093A02_532.pair
Original datafile2 name: 310093A02_635.pair
SD of values from reference genes: 0.337
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.19 2.20 2.47
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 231 well H07 (strain 25849)


title: SLAM Project Data: Synthetic Lethality with yer091c-a

description:
Internal identifier for dataset: SL/100526/16
Original datafile name: 310050A04_532.pair
Original datafile2 name: 310050A04_635.pair
SD of values from reference genes: 0.337
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.12 0.76 1.80
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 231 well G10 (strain 25841)


title: SLAM Project Data: Synthetic Lethality with elg1-rep3

description:
Internal identifier for dataset: SL/051220/1
Original datafile name: 051220_223_F06_1_CT.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.439
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.40 2.14 2.55
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 223 well F06 (strain 22400)


title: SLAM Project Data: Synthetic Lethality with emp46

description:
Internal identifier for dataset: SL/050524/1
Original datafile name: 050524_203_B02.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.587
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.16 1.42 1.54
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 203 well B02 (strain 22691)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with yer093c-a

description:
Internal identifier for dataset: SL/100617/2
Original datafile name: 308376A02_532.pair
Original datafile2 name: 308376A02_635.pair
SD of values from reference genes: 0.247
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.36 2.77 3.43
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 240 well B10 (strain 26399)


title: SLAM Project Data: Synthetic Lethality with erd1

description:
Internal identifier for dataset: SL/061110/5
Original datafile name: 061110_214_B10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.746
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.96 1.14 1.23
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 214 well B10 (strain 24250)


title: SLAM Project Data: Synthetic Lethality with emi5

description:
Internal identifier for dataset: SL/050513/6
Original datafile name: 050513_209_F10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.436
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.91 1.77 2.30
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well F10 (strain 21763)


title: SLAM Project Data: Synthetic Lethality with elp4

description:
Internal identifier for dataset: SL/050927/5
Original datafile name: 050927_211_E05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.501
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.06 1.53 1.72
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well E05 (strain 22150)


title: SLAM Project Data: Synthetic Lethality with elp3

description:
Internal identifier for dataset: SL/050909/9
Original datafile name: 050909_229_E04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.585
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.31 1.32 1.21
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 229 well E04 (strain 22742)


title: SLAM Project Data: Synthetic Lethality with yet1

description:
Internal identifier for dataset: SL/090814/8
Original datafile name: 090814NG300040A04_532.pair
Original datafile2 name: 090814NG300040A04_635.pair
SD of values from reference genes: 0.297
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.99 3.11 3.24
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate  well  (strain NA)


title: SLAM Project Data: Synthetic Lethality with yer077c

description:
Internal identifier for dataset: SL/100603/23
Original datafile name: 308113A03_532.pair
Original datafile2 name: 308113A03_635.pair
SD of values from reference genes: 0.646
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.27 0.86 1.14
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 240 well B03 (strain 26391)


title: SLAM Project Data: Synthetic Lethality with yer078c

description:
Internal identifier for dataset: SL/100616/23
Original datafile name: 308147A03_532.pair
Original datafile2 name: 308147A03_635.pair
SD of values from reference genes: 0.449
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.74 1.50 1.70
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 240 well B04 (strain 26392)


title: SLAM Project Data: Synthetic Lethality with ydr319c

description:
Internal identifier for dataset: SL/100513/6
Original datafile name: 308521A02_532.pair
Original datafile2 name: 308521A02_635.pair
SD of values from reference genes: 0.275
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.27 1.62 2.48
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well G09 (strain 23678)


title: SLAM Project Data: Synthetic Lethality with ydr306c

description:
Internal identifier for dataset: SL/090624/10
Original datafile name: 090624NG129650A02_532.pair
Original datafile2 name: 090624NG129650A02_635.pair
SD of values from reference genes: 0.375
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.01 2.90 3.32
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well F08 (strain 23665)


title: SLAM Project Data: Synthetic Lethality with ydr333c

description:
Internal identifier for dataset: SL/100518/2
Original datafile name: 308136A02_532.pair
Original datafile2 name: 308136A02_635.pair
SD of values from reference genes: 0.377
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.71 1.69 1.94
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well H10 (strain 23692)


title: SLAM Project Data: Synthetic Lethality with elg1

description:
Internal identifier for dataset: SL/051209/2
Original datafile name: 051209_223_F06_3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.611
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.62 1.89 2.04
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with ydr336w

description:
Internal identifier for dataset: SL/100518/3
Original datafile name: 308136A03_532.pair
Original datafile2 name: 308136A03_635.pair
SD of values from reference genes: 0.291
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.72 2.42 3.00
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 237 well A01 (strain 23695)


title: SLAM Project Data: Synthetic Lethality with eht1

description:
Internal identifier for dataset: SL/050928/6
Original datafile name: 050928_211_F05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.474
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.63 1.72 2.01
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well F05 (strain 23317)


title: SLAM Project Data: Synthetic Lethality with yel1

description:
Internal identifier for dataset: SL/100428/10
Original datafile name: 308075A02_532.pair
Original datafile2 name: 308075A02_635.pair
SD of values from reference genes: 0.414
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.91 1.98 2.16
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 233 well A09 (strain 23086)


title: SLAM Project Data: Synthetic Lethality with elg1-rep2

description:
Internal identifier for dataset: SL/050907/2
Original datafile name: 050907_223_F06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.509
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.21 0.68 1.27
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 223 well F06 (strain 22400)


title: SLAM Project Data: Synthetic Lethality with ent4

description:
Internal identifier for dataset: SL/050517/8
Original datafile name: 050517_202_B11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.413
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.78 2.46 2.59
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 202 well B11 (strain 21526)


title: SLAM Project Data: Synthetic Lethality with ydr291w-rep2

description:
Internal identifier for dataset: SL/100504/21
Original datafile name: 308299A01_532.pair
Original datafile2 name: 308299A01_635.pair
SD of values from reference genes: 0.431
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.76 1.24 1.70
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well E05 (strain 23650)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with eft2

description:
Internal identifier for dataset: SL/051102/8
Original datafile name: 051102_213_H05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.333
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.55 2.19 2.93
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 213 well H05 (strain 24221)


title: SLAM Project Data: Synthetic Lethality with ydr291w

description:
Internal identifier for dataset: SL/100513/16
Original datafile name: 308135A04_532.pair
Original datafile2 name: 308135A04_635.pair
SD of values from reference genes: 0.381
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.73 1.64 1.91
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with egt2

description:
Internal identifier for dataset: SL/041216/5
Original datafile name: 041216_206_E10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.576
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.63 1.38 1.73
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 206 well E10 (strain 21117)


title: SLAM Project Data: Synthetic Lethality with ydr250c

description:
Internal identifier for dataset: SL/100506/19
Original datafile name: 308517A03_532.pair
Original datafile2 name: 308517A03_635.pair
SD of values from reference genes: 0.274
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.92 2.05 2.32
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well B03 (strain 23609)


title: SLAM Project Data: Synthetic Lethality with eeb1

description:
Internal identifier for dataset: SL/050928/3
Original datafile name: 050928_211_E12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.464
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.54 1.72 2.01
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well E12 (strain 22157)


title: SLAM Project Data: Synthetic Lethality with ydr282c

description:
Internal identifier for dataset: SL/100504/15
Original datafile name: 308295A03_532.pair
Original datafile2 name: 308295A03_635.pair
SD of values from reference genes: 0.338
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.05 1.12 2.09
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well D09 (strain 23641)


title: SLAM Project Data: Synthetic Lethality with ecm29

description:
Internal identifier for dataset: SL/080425/10
Original datafile name: 080425_216_H09_10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.400
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.93 2.18 2.33
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well H09 (strain 20933)


title: SLAM Project Data: Synthetic Lethality with ydr266c

description:
Internal identifier for dataset: SL/090624/9
Original datafile name: 090624NG129650A01_532.pair
Original datafile2 name: 090624NG129650A01_635.pair
SD of values from reference genes: 0.330
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.81 3.11 3.45
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well C07 (strain 23625)


title: SLAM Project Data: Synthetic Lethality with ydr286c

description:
Internal identifier for dataset: SL/100504/19
Original datafile name: 308298A03_532.pair
Original datafile2 name: 308298A03_635.pair
SD of values from reference genes: 0.394
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.72 1.99 2.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well E01 (strain 23645)


title: SLAM Project Data: Synthetic Lethality with ecm3

description:
Internal identifier for dataset: SL/050512/11
Original datafile name: 050512_208_B02.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.472
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.15 1.94 1.88
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well B02 (strain 21868)


title: SLAM Project Data: Synthetic Lethality with ecm5

description:
Internal identifier for dataset: SL/050617/1.1
Original datafile name: 050617_205_B07_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.734
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.05 1.40 1.27
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well B07 (strain 20761)


title: SLAM Project Data: Synthetic Lethality with ydr239c

description:
Internal identifier for dataset: SL/100406/20
Original datafile name: 308418A04_532.pair
Original datafile2 name: 308418A04_635.pair
SD of values from reference genes: 0.510
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.96 1.88 2.12
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well G02 (strain 23598)


title: SLAM Project Data: Synthetic Lethality with ydr249c

description:
Internal identifier for dataset: SL/100506/18
Original datafile name: 308517A02_532.pair
Original datafile2 name: 308517A02_635.pair
SD of values from reference genes: 0.299
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.15 2.45 2.71
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well B02 (strain 23608)