title: SLAM Project Data: Synthetic Lethality with met2

description:
Internal identifier for dataset: SL/050107/1
Original datafile name: 050103_207_A6.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.700
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.31 1.73 1.59
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with mec3

status: Public on Feb 28 2013

type: genomic

city: Baltimore

first: Jef

last: Boeke

address: 733 N BROADWAY # 339

country: USA

institute: Johns Hopkins U

description:
Internal identifier for dataset: SL/050909/7
Original datafile name: 050909_226_C08.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.535
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.60 0.94 1.67
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

hyb_protocol: Labeled extracts were hybridized overnight to Agilent 22k microarray slides at 42 degrees C.

scan_protocol: Images were acquired with a GenePix 4000B or 4200 AL scanner at 10 um resolution.

data_processing: Two-channel image files were analyzed with the GenePix Pro software package (Molecular Dynamics, version 5.1 or higher). Annotations were reconstructed from data downloaded from the Saccharomyces Genome Database on 2008-11-15. Numerical data were obtained as the median of foreground signal intensities. Background signal intensities were not used. Custom R packages (hoptag v3.9-7; hoptagInfo02A v3.9-6) were used with their default options. See the software and PDF documentation included with this GEO Series submission for details. The VALUE column represents a dynamically weighted sum of data from the UpTag and DnTag probes for each gene.

molecule: genomic DNA

organism: Saccharomyces cerevisiae

source_name: Reference

label_protocol: UpTag and DnTag sequences were amplified from genomic DNA by asymmetric PCR using labeled primers.

growth_protocol: Cells were grown at 30 degrees C for approximately eight doublings using "Magic Marker" selectable medium supplemented with uracil.

extract_protocol: Genomic DNA was extracted by phenol extraction or by use of proprietary kits (e.g., Epicentre, Norgen).

tag: query gene

tag: knockout clone

value: Plate 226 well C08 (strain 25198)

tag: genetic background

tag: pool genotype

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX

source_name: Test

growth_protocol: Cells were grown without added uracil, using materials and procedures that were otherwise the same as those for Channel 1.


title: SLAM Project Data: Synthetic Lethality with bop2

description:
Internal identifier for dataset: SL/100323/2
Original datafile name: 100323NG300340A02_532.pair
Original datafile2 name: 100323NG300340A02_635.pair
SD of values from reference genes: 0.458
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.19 1.53 2.03
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

hyb_protocol: Labeled extracts were hybridized overnight to NimbleGen 72k 4-plex microarray slides at 42 degrees C.

scan_protocol: Images were acquired with a GenePix 4200AL scanner at 5 um resolution or an Agilent G2505C scanner at 2 um resolution

data_processing: Two-channel image files were analyzed with the NimbleScan software package (Roche NimbleGen, version 2.3.78 or higher). Annotations were reconstructed from data downloaded from the Saccharomyces Genome Database on 2008-11-15. Numerical data were obtained as the mean of the central pixels. Background signal intensities were not used. Custom R packages (hoptag v3.9-7; hoptagInfo07A v3.9-6) were used with their default options. See the software and PDF documentation included with this GEO Series submission for details. The VALUE column represents a dynamically weighted sum of data from the UpTag and DnTag probes for each gene.

value: Plate 226 well A10 (strain 25176)


title: SLAM Project Data: Synthetic Lethality with bzz1-rep2

description:
Internal identifier for dataset: SL/090402/16
Original datafile name: 090402NG142643A04_532.pair
Original datafile2 name: 090402NG142643A04_635.pair
SD of values from reference genes: 0.366
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.12 2.33 2.46
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well A06 (strain 21942)


title: SLAM Project Data: Synthetic Lethality with bst1

description:
Internal identifier for dataset: SL/100526/5
Original datafile name: 310027A01_532.pair
Original datafile2 name: 310027A01_635.pair
SD of values from reference genes: 0.453
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.81 1.40 1.83
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 237 well G01 (strain 25644)


title: SLAM Project Data: Synthetic Lethality with bns1

description:
Internal identifier for dataset: SL/100427/4
Original datafile name: 310121A04_532.pair
Original datafile2 name: 310121A04_635.pair
SD of values from reference genes: 0.514
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.34 1.40 1.56
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well C04 (strain 25883)


title: SLAM Project Data: Synthetic Lethality with bna6

description:
Internal identifier for dataset: SL/100504/11
Original datafile name: 308160A03_532.pair
Original datafile2 name: 308160A03_635.pair
SD of values from reference genes: 0.363
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.66 1.78 1.83
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well A06 (strain 25861)


title: SLAM Project Data: Synthetic Lethality with mei5

description:
Internal identifier for dataset: SL/050712/9
Original datafile name: 050712_211_C10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.610
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.25 0.82 1.33
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well C10 (strain 22131)


title: SLAM Project Data: Synthetic Lethality with bna6-rep2

description:
Internal identifier for dataset: SL/100421/18
Original datafile name: 310113A02_532.pair
Original datafile2 name: 310113A02_635.pair
SD of values from reference genes: 0.464
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.51 1.47 1.70
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with mek1

description:
Internal identifier for dataset: SL/050429/4
Original datafile name: 050429_208_F03.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.528
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.23 1.84 1.82
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well F03 (strain 21648)


title: SLAM Project Data: Synthetic Lethality with btt1

description:
Internal identifier for dataset: SL/100506/21
Original datafile name: 308518A01_532.pair
Original datafile2 name: 308518A01_635.pair
SD of values from reference genes: 0.338
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.22 1.90 2.49
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well B05 (strain 23611)


title: SLAM Project Data: Synthetic Lethality with bdf2

description:
Internal identifier for dataset: SL/100302/11
Original datafile name: 100302NG264529A03_532.pair
Original datafile2 name: 100302NG264529A03_635.pair
SD of values from reference genes: 0.329
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.40 2.55 2.68
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 259 well A07 (strain 23767)


title: SLAM Project Data: Synthetic Lethality with bfr1

description:
Internal identifier for dataset: SL/100115/5
Original datafile name: 100115NG301673A01_532.pair
Original datafile2 name: 100115NG301673A01_635.pair
SD of values from reference genes: 0.723
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.25 0.99 1.24
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 224 well B08 (strain 22454)


title: SLAM Project Data: Synthetic Lethality with mcx1

description:
Internal identifier for dataset: SL/050929/10
Original datafile name: 050929_212_A11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.439
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.95 1.44 2.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 212 well A11 (strain 23367)


title: SLAM Project Data: Synthetic Lethality with mck1

description:
Internal identifier for dataset: SL/041217/4
Original datafile name: 041217_206_G3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.609
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.59 1.29 1.36
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 206 well G03 (strain 21137)


title: SLAM Project Data: Synthetic Lethality with mdj2

description:
Internal identifier for dataset: SL/041222/4
Original datafile name: 041222_206_E9.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.394
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.97 2.29 2.25
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 206 well E09 (strain 21116)


title: SLAM Project Data: Synthetic Lethality with bdf1

description:
Internal identifier for dataset: SL/100305/4
Original datafile name: 100305NG300042A04_532.pair
Original datafile2 name: 100305NG300042A04_635.pair
SD of values from reference genes: 0.802
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.28 0.93 1.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 227 well E11 (strain 25308)


title: SLAM Project Data: Synthetic Lethality with mak10

description:
Internal identifier for dataset: SL/070629/3
Original datafile name: 070629_214_H02_3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.793
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.98 1.02 1.05
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 214 well H02 (strain 20294)


title: SLAM Project Data: Synthetic Lethality with mdm20

description:
Internal identifier for dataset: SL/050513/7
Original datafile name: 050513_209_G01.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.673
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.03 1.16 1.26
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well G01 (strain 21767)


title: SLAM Project Data: Synthetic Lethality with mam3

description:
Internal identifier for dataset: SL/050510/14
Original datafile name: 050510_209_E11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.676
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.06 1.20 1.51
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well E11 (strain 21752)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with mdl2

description:
Internal identifier for dataset: SL/050513/13
Original datafile name: 050513_209_H01.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.362
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.26 2.33 2.43
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well H01 (strain 21022)


title: SLAM Project Data: Synthetic Lethality with avt3

description:
Internal identifier for dataset: SL/091103/10
Original datafile name: 091103NG300076BA02_532.pair
Original datafile2 name: 091103NG300076BA02_635.pair
SD of values from reference genes: 0.292
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.31 2.78 2.82
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 222 well H05 (strain 24996)


title: SLAM Project Data: Synthetic Lethality with lsm6

description:
Internal identifier for dataset: SL/051102/6
Original datafile name: 051102_213_G10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.312
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.57 2.70 2.84
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 213 well G10 (strain 24214)


title: SLAM Project Data: Synthetic Lethality with lyp1

description:
Internal identifier for dataset: SL/050104/1
Original datafile name: 050104_207_B3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.524
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.93 1.12 1.71
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate  well  (strain NA)


title: SLAM Project Data: Synthetic Lethality with lsm6-rep3

description:
Internal identifier for dataset: SL/051220/3.01
Original datafile name: 051220_213_G10_1_PM.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.311
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.68 3.10 3.32
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with lsm12-rep2

description:
Internal identifier for dataset: SL/061103/11
Original datafile name: 061103_218_A12_N_Liq_SWAP.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.358
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.28 3.72 3.66
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well A12 (strain 21949)


title: SLAM Project Data: Synthetic Lethality with avo2

description:
Internal identifier for dataset: SL/100603/1
Original datafile name: 310069A01_532.pair
Original datafile2 name: 310069A01_635.pair
SD of values from reference genes: 0.351
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.46 1.95 2.52
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 239 well B12 (strain 26201)


title: SLAM Project Data: Synthetic Lethality with lsm6-rep2

description:
Internal identifier for dataset: SL/051222/1
Original datafile name: 051222_213_G10_1_CT.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.483
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.32 2.23 2.19
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with lrs4

description:
Internal identifier for dataset: SL/050922/10
Original datafile name: 050922_259_C11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.709
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.13 1.32 1.34
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 259 well C11 (strain 24275)


title: SLAM Project Data: Synthetic Lethality with atp7

description:
Internal identifier for dataset: SL/090513/9
Original datafile name: 090513NG129635BA01_532.pair
Original datafile2 name: 090513NG129635BA01_635.pair
SD of values from reference genes: 0.723
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.25 1.72 1.78
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 220 well E11 (strain 24865)


title: SLAM Project Data: Synthetic Lethality with lsb1

description:
Internal identifier for dataset: SL/070131/12
Original datafile name: 070131_216_A03_12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.338
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.31 2.99 3.33
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well A03 (strain 24766)


title: SLAM Project Data: Synthetic Lethality with mba1

description:
Internal identifier for dataset: SL/050928/10
Original datafile name: 050928_211_F11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.369
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.16 1.90 2.62
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well F11 (strain 23325)


title: SLAM Project Data: Synthetic Lethality with lrp1

description:
Internal identifier for dataset: SL/070711/12
Original datafile name: 070711_217_G01_12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.685
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.22 0.86 1.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well G01 (strain 21909)


title: SLAM Project Data: Synthetic Lethality with atp5-rep2

description:
Internal identifier for dataset: SL/100525/1
Original datafile name: 308472A01_532.pair
Original datafile2 name: 308472A01_635.pair
SD of values from reference genes: 0.443
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.77 1.50 1.74
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well E12 (strain 23657)


title: SLAM Project Data: Synthetic Lethality with atp5

description:
Internal identifier for dataset: SL/100504/24
Original datafile name: 308299A04_532.pair
Original datafile2 name: 308299A04_635.pair
SD of values from reference genes: 0.442
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.98 1.76 1.96
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with lsm12

description:
Internal identifier for dataset: SL/061110/3
Original datafile name: 061110_218_A12_N_SWAP.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.338
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.01 3.42 3.19
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with lem3

description:
Internal identifier for dataset: SL/041216/6
Original datafile name: 041216_206_F2.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.461
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.89 2.14 2.17
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 206 well F02 (strain 21121)


title: SLAM Project Data: Synthetic Lethality with atp25

description:
Internal identifier for dataset: SL/100625/15
Original datafile name: 255893A03_532.pair
Original datafile2 name: 255893A03_635.pair
SD of values from reference genes: 0.515
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.61 1.25 1.56
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 241 well E12 (strain 26538)


title: SLAM Project Data: Synthetic Lethality with ksp1

description:
Internal identifier for dataset: SL/070725/6
Original datafile name: 070725_217_G02_6.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.481
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.17 1.03 1.38
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well G02 (strain 21910)


title: SLAM Project Data: Synthetic Lethality with lpx1

description:
Internal identifier for dataset: SL/050512/6
Original datafile name: 050512_208_A06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.479
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.12 1.79 1.91
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well A06 (strain 21860)


title: SLAM Project Data: Synthetic Lethality with atp12

description:
Internal identifier for dataset: SL/100316/13
Original datafile name: 100316NG300227A01_532.pair
Original datafile2 name: 100316NG300227A01_635.pair
SD of values from reference genes: 0.400
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.89 1.77 2.05
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 225 well C08 (strain 21245)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with lag2

description:
Internal identifier for dataset: SL/050510/6
Original datafile name: 050510_209_B11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.641
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.20 1.77 1.66
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well B11 (strain 21716)


title: SLAM Project Data: Synthetic Lethality with kre11

description:
Internal identifier for dataset: SL/070412/12
Original datafile name: 070412_216_C08_12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.505
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.81 2.03 2.11
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 216 well C08 (strain 24796)


title: SLAM Project Data: Synthetic Lethality with kre1

description:
Internal identifier for dataset: SL/050210/3.01
Original datafile name: 050210_206_F3_100ng.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.593
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.56 1.60 2.06
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 206 well F03 (strain 21122)


title: SLAM Project Data: Synthetic Lethality with atp10

description:
Internal identifier for dataset: SL/100330/17
Original datafile name: 308036A01_532.pair
Original datafile2 name: 308036A01_635.pair
SD of values from reference genes: 0.320
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.23 2.18 2.41
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 227 well E06 (strain 25302)


title: SLAM Project Data: Synthetic Lethality with kip2

description:
Internal identifier for dataset: SL/050922/4
Original datafile name: 050922_211_A05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.464
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.14 1.39 1.52
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well A05 (strain 22097)


title: SLAM Project Data: Synthetic Lethality with kin2

description:
Internal identifier for dataset: SL/050524/7
Original datafile name: 050524_203_C06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.438
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.78 2.02 2.22
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 203 well C06 (strain 22707)


title: SLAM Project Data: Synthetic Lethality with kes1

description:
Internal identifier for dataset: SL/050920/6
Original datafile name: 050920_211_B02.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.577
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.92 1.17 1.41
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well B02 (strain 22107)


title: SLAM Project Data: Synthetic Lethality with kel3

description:
Internal identifier for dataset: SL/050513/18
Original datafile name: 050513_209_H08.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.398
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.68 2.51 2.46
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well H08 (strain 21029)


title: SLAM Project Data: Synthetic Lethality with kar9-rep2

description:
Internal identifier for dataset: SL/050513/14
Original datafile name: 050513_209_H02.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.400
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.06 2.40 2.37
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well H02 (strain 21023)


title: SLAM Project Data: Synthetic Lethality with lag1

description:
Internal identifier for dataset: SL/061006/2
Original datafile name: 061006_217_B08.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.445
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.81 2.35 2.25
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well B08 (strain 20960)


title: SLAM Project Data: Synthetic Lethality with atg11

description:
Internal identifier for dataset: SL/100625/7
Original datafile name: 255856A03_532.pair
Original datafile2 name: 255856A03_635.pair
SD of values from reference genes: 0.278
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.27 1.66 2.13
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 242 well C08 (strain 25468)


title: SLAM Project Data: Synthetic Lethality with isw2

description:
Internal identifier for dataset: SL/050426/13.2
Original datafile name: 050426_208_C04_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.571
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.15 1.20 1.51
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 208 well C04 (strain 21601)


title: SLAM Project Data: Synthetic Lethality with jlp1

description:
Internal identifier for dataset: SL/041118/2
Original datafile name: 041118_202_D3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.819
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.99 1.38 1.36
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 202 well D03 (strain 21545)


title: SLAM Project Data: Synthetic Lethality with atg26

description:
Internal identifier for dataset: SL/090414/11
Original datafile name: 090414NG142755BA03_532.pair
Original datafile2 name: 090414NG142755BA03_635.pair
SD of values from reference genes: 0.333
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.93 3.62 3.75
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 220 well A09 (strain 24138)


title: SLAM Project Data: Synthetic Lethality with kar9

description:
Internal identifier for dataset: SL/050617/10.2
Original datafile name: 050617_209_H02_swap.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.592
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.22 1.14 1.37
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with isw1

description:
Internal identifier for dataset: SL/051011/2
Original datafile name: 051011_212_C04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.569
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.57 1.28 1.59
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 212 well C04 (strain 23385)


title: SLAM Project Data: Synthetic Lethality with atc1

description:
Internal identifier for dataset: SL/100331/22
Original datafile name: 308086A02_532.pair
Original datafile2 name: 308086A02_635.pair
SD of values from reference genes: 0.322
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.43 2.17 2.68
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well B08 (strain 23543)


title: SLAM Project Data: Synthetic Lethality with irc25-rep2

description:
Internal identifier for dataset: SL/041118/5.1
Original datafile name: 041118_202_F4_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.562
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.64 1.23 1.76
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 202 well F04 (strain 21576)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with kre1-rep2

description:
Internal identifier for dataset: SL/041216/7
Original datafile name: 041216_206_F3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.476
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.92 2.07 2.44
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with ist1

description:
Internal identifier for dataset: SL/050104/3
Original datafile name: 050104_207_B5.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.315
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.33 2.87 3.07
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 207 well B05 (strain 21179)


title: SLAM Project Data: Synthetic Lethality with irc25

description:
Internal identifier for dataset: SL/041112/3
Original datafile name: 041112_202_F4.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.856
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.19 0.57 1.22
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with isu1

description:
Internal identifier for dataset: SL/050920/11
Original datafile name: 050920_211_B11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.577
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.91 0.90 1.23
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well B11 (strain 22117)


title: SLAM Project Data: Synthetic Lethality with atg27

description:
Internal identifier for dataset: SL/100316/14
Original datafile name: 100316NG300227A02_532.pair
Original datafile2 name: 100316NG300227A02_635.pair
SD of values from reference genes: 0.346
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.76 1.00 2.50
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 225 well C10 (strain 21247)


type: RNA

city: Logan

first: Taylor

middle: S

last: Oberg

state: UT

address: 8700 Old Main

department: NDFS

institute: Utah State University

description: Gene expression data from NCC2705 cells exposed to 1.25mM H2O2 after 60 min, biological rep2

hyb_protocol: Following fragmentation, 10 ug of cDNA were hybridized for 16 hr at 55oC on a custom Affymetrex Bifidobacteria Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400 according to the Affymetrix protocol.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A according to the Affymetrix protocol..

data_processing: The data were analyzed with Bioconductor in the open statistical platform R version 2.9.0 using the robust multiarray average (RMA) muti-species method.

label: biotin

molecule: total RNA

organism: Bifidobacterium longum NCC2705

label_protocol: Biotinylated cDNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: RNA isolation.  Cell pellets were thawed at room temperature, then carefully suspended in 1 ml of lysozyme solution (20 mg/ml in TE buffer) that also contained 20 Units of mutanolysin (Sigma, St. Louis, MO).  This mixture was incubated at 37oC for 30 minutes in a shaker incubator at 240 rpm, then total RNA was isolated from each of the cell samples using the Aurum Total RNA Mini Kit (Bio-Rad Laboratories, Hercules, CA) following procedures recommended by the vendor.

treatment_protocol: Cell treatments for transcriptome studies. Cells were grown to late loge phase at 37oC under anaerobic conditions with pH control at 6.5 after which four 5 ml samples were aseptically harvested into sterile 200 ml centrifuge bottles and immediately suspended in 50 mL pre-warmed 50 mL pre-warmed MP5 media containing 1.25mM H2O2. Cells were harvested for RNA isolation after 5 min (T1) and 60 min (T2). Cells were immediatly suspended in 100 mL of RNAprotect reagent (QIAGEN, Inc., Valencia,, CA) and incubated at room temperature for 10 min then collected by cetrifugation. Control cells were immediatly suspended in 10 mL of RNAprotect and incubated at room temperature for 10 min hen collected by cetrifugation (C1).    Cell pellets were stored at -80oC until RNA isolation.

tag: strain


description: Gene expression data from NCC2705 cells exposed to 1.25mM H2O2 after 60 min, biological rep1


title: SLAM Project Data: Synthetic Lethality with irc19

description:
Internal identifier for dataset: SL/050517/7
Original datafile name: 050517_202_B06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.540
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.29 1.82 1.87
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 202 well B06 (strain 21521)


description: Gene expression data from NCC2705 cells exposed to 1.25mM H2O2 after 60 min, biological rep3


title: SLAM Project Data: Synthetic Lethality with irc11-rep2

description:
Internal identifier for dataset: SL/050105/9.1
Original datafile name: 050105_207_D6_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.497
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.83 0.78 1.83
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 207 well D06 (strain 21789)


title: SLAM Project Data: Synthetic Lethality with irc22

description:
Internal identifier for dataset: SL/061110/12
Original datafile name: 061110_214_D05_A.gpr
Original datafile2 name: <none>
SD of values from reference genes: 1.034
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.69 0.68 0.85
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 214 well D05 (strain 20241)


title: SLAM Project Data: Synthetic Lethality with asp1

description:
Internal identifier for dataset: SL/100513/8
Original datafile name: 308521A04_532.pair
Original datafile2 name: 308521A04_635.pair
SD of values from reference genes: 0.405
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.81 1.44 1.80
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 236 well G11 (strain 23680)


title: SLAM Project Data: Synthetic Lethality with ask10

description:
Internal identifier for dataset: SL/091103/16
Original datafile name: 091103NG300103A04_532.pair
Original datafile2 name: 091103NG300103A04_635.pair
SD of values from reference genes: 0.549
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.97 1.45 1.85
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 223 well A03 (strain 24727)


title: SLAM Project Data: Synthetic Lethality with irc11

description:
Internal identifier for dataset: SL/050331/4
Original datafile name: 050331_207D6.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.611
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.00 1.47 1.54
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with ask1

description:
Internal identifier for dataset: SL/090527/18
Original datafile name: 090527NG142890BA02_532.pair
Original datafile2 name: 090527NG142890BA02_635.pair
SD of values from reference genes: 0.715
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.10 1.22 1.25
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 220 well H11 (strain 24901)


title: SLAM Project Data: Synthetic Lethality with asi2

description:
Internal identifier for dataset: SL/100428/15
Original datafile name: 308077A03_532.pair
Original datafile2 name: 308077A03_635.pair
SD of values from reference genes: 0.320
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.87 1.65 2.03
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 235 well B03 (strain 22053)


description: Gene expression data from NCC2705 cells exposed to 1.25mM H2O2 after 5 min, biological rep2


description: Gene expression data from NCC2705 cells exposed to 1.25mM H2O2 after 5 min, biological rep3


title: SLAM Project Data: Synthetic Lethality with ash1

description:
Internal identifier for dataset: SL/090624/21
Original datafile name: 090624NG129653A01_532.pair
Original datafile2 name: 090624NG129653A01_635.pair
SD of values from reference genes: 0.285
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.60 3.01 3.89
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 221 well D01 (strain 25035)


title: SLAM Project Data: Synthetic Lethality with irc10

description:
Internal identifier for dataset: SL/050505/10
Original datafile name: 050505_209_B03.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.695
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.17 1.41 1.33
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well B03 (strain 21706)


title: SLAM Project Data: Synthetic Lethality with irc10-rep2

description:
Internal identifier for dataset: SL/050510/2
Original datafile name: 050510_209_B03.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.667
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.03 1.38 1.49
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with ipt1

description:
Internal identifier for dataset: SL/051018/1
Original datafile name: 051018_212_F09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.506
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.32 2.27 2.33
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 212 well F09 (strain 24007)


description: Gene expression data from NCC2705 cells exposed to 1.25mM H2O2 after 5 min, biological rep1


description: Gene expression data from NCC2705 unexposed control cells after 60 min, biological rep2


description: Gene expression data from NCC2705 unexposed control cells after 60 min, biological rep3


title: SLAM Project Data: Synthetic Lethality with ioc2

description:
Internal identifier for dataset: SL/050524/6
Original datafile name: 050524_203_C05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.604
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.15 1.56 1.55
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 203 well C05 (strain 22706)


title: SLAM Project Data: Synthetic Lethality with asf1

description:
Internal identifier for dataset: SL/100625/11
Original datafile name: 255859A03_532.pair
Original datafile2 name: 255859A03_635.pair
SD of values from reference genes: 0.372
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.98 1.62 1.95
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 242 well H05 (strain 21310)


title: SLAM Project Data: Synthetic Lethality with inp2

description:
Internal identifier for dataset: SL/050623/4
Original datafile name: 050623_205_A06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.501
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.33 1.42 1.55
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well A06 (strain 20746)


title: SLAM Project Data: Synthetic Lethality with iml3

description:
Internal identifier for dataset: SL/050909/21
Original datafile name: 050909_270_A06.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.454
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.38 1.08 1.59
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 270 well A06 (strain 23246)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with asg7

description:
Internal identifier for dataset: SL/100316/15
Original datafile name: 100316NG300227A03_532.pair
Original datafile2 name: 100316NG300227A03_635.pair
SD of values from reference genes: 0.397
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.28 1.98 2.37
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 225 well D02 (strain 21255)


title: SLAM Project Data: Synthetic Lethality with ino2

description:
Internal identifier for dataset: SL/051027/7
Original datafile name: 051027_213_B11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.320
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.44 2.66 3.04
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 213 well B11 (strain 24057)


title: SLAM Project Data: Synthetic Lethality with arr1

description:
Internal identifier for dataset: SL/100420/14
Original datafile name: 308375A02_532.pair
Original datafile2 name: 308375A02_635.pair
SD of values from reference genes: 0.511
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.29 1.56 1.68
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 231 well E08 (strain 25614)


title: SLAM Project Data: Synthetic Lethality with icy2

description:
Internal identifier for dataset: SL/050628/18
Original datafile name: 050628_210_A09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.373
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.20 1.84 2.54
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 210 well A09 (strain 21042)


title: SLAM Project Data: Synthetic Lethality with arr2

description:
Internal identifier for dataset: SL/100420/16
Original datafile name: 308375A04_532.pair
Original datafile2 name: 308375A04_635.pair
SD of values from reference genes: 0.356
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.09 2.66 2.73
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 231 well E09 (strain 25615)


title: SLAM Project Data: Synthetic Lethality with arp8

description:
Internal identifier for dataset: SL/091118/8
Original datafile name: 091118NG300159A04_532.pair
Original datafile2 name: 091118NG300159A04_635.pair
SD of values from reference genes: 0.700
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.17 0.71 1.21
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 223 well F03 (strain 22397)


title: SLAM Project Data: Synthetic Lethality with inm1

description:
Internal identifier for dataset: SL/070725/3
Original datafile name: 070725_217_E01_3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.461
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.82 1.52 1.90
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 217 well E01 (strain 21873)


description: Gene expression data from NCC2705 unexposed control cells at 0 min, biological rep3


title: SLAM Project Data: Synthetic Lethality with arp1

description:
Internal identifier for dataset: SL/090217/10
Original datafile name: 090217NG142280A02_532.pair
Original datafile2 name: 090217NG142280A02_635.pair
SD of values from reference genes: 0.314
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.87 3.86 3.63
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well B05 (strain 21957)


description: Gene expression data from NCC2705 unexposed control cells after 60 min, biological rep1


title: SLAM Project Data: Synthetic Lethality with hxt14-rep2

description:
Internal identifier for dataset: SL/041221/2
Original datafile name: 041221_206_F7.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.481
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.98 2.44 2.30
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 206 well F07 (strain 21126)


title: SLAM Project Data: Synthetic Lethality with icy1

description:
Internal identifier for dataset: SL/050623/11
Original datafile name: 050623_205_D02.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.353
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.69 1.97 2.27
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well D02 (strain 20781)


title: SLAM Project Data: Synthetic Lethality with hxt14

description:
Internal identifier for dataset: SL/041217/1.1
Original datafile name: 041217_206_F7_B.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.561
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.18 1.18 1.45
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


description: Gene expression data from D2957 cells exposed to 1.25mM H2O2 after 60 min, biological rep3

organism: Bifidobacterium longum


title: SLAM Project Data: Synthetic Lethality with aro9-rep3

description:
Internal identifier for dataset: SL/090421/16
Original datafile name: 090421NG142644BA04_532.pair
Original datafile2 name: 090421NG142644BA04_635.pair
SD of values from reference genes: 0.383
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): NA 1.81 1.88
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 218 well C01 (strain 21965)


description: Gene expression data from NCC2705 unexposed control cells at 0 min, biological rep1


title: SLAM Project Data: Synthetic Lethality with inp1

description:
Internal identifier for dataset: SL/050617/8
Original datafile name: 050617_205_D11.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.321
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.05 2.55 2.69
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well D11 (strain 20790)


description: Gene expression data from NCC2705 unexposed control cells at 0 min, biological rep2


title: SLAM Project Data: Synthetic Lethality with hul4

description:
Internal identifier for dataset: SL/050909/16
Original datafile name: 050909_248_E08.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.677
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.31 0.41 1.30
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 248 well E08 (strain 26834)


title: SLAM Project Data: Synthetic Lethality with hul4-rep2

description:
Internal identifier for dataset: SL/050907/14
Original datafile name: 050907_248_E08.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.592
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.50 0.80 1.39
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with hub1

description:
Internal identifier for dataset: SL/050916/13
Original datafile name: 050916_245_B04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.546
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.78 1.20 1.23
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 245 well B04 (strain 26076)


title: SLAM Project Data: Synthetic Lethality with ifm1

description:
Internal identifier for dataset: SL/050510/5
Original datafile name: 050510_209_B09.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.870
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.00 1.25 1.27
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well B09 (strain 21714)


title: SLAM Project Data: Synthetic Lethality with hst3-rep2

description:
Internal identifier for dataset: SL/061220/8
Original datafile name: 061220_HST3_0008.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.313
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.72 2.74 2.99
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 207 well E04 (strain 21801)


title: SLAM Project Data: Synthetic Lethality with hxt2

description:
Internal identifier for dataset: SL/050603/7
Original datafile name: 050603_204_D01.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.842
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.18 1.02 1.24
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 204 well D01 (strain 20586)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with hst4

description:
Internal identifier for dataset: SL/050802/3.1
Original datafile name: 050802_228_C03_OS.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.445
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.93 1.85 2.39
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well C03 (strain 23550)


description: Gene expression data from D2957 cells exposed to 1.25mM H2O2 after 60 min, biological rep2


title: SLAM Project Data: Synthetic Lethality with arl3

description:
Internal identifier for dataset: SL/100413/19
Original datafile name: 308500A03_532.pair
Original datafile2 name: 308500A03_635.pair
SD of values from reference genes: 0.446
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.10 1.62 2.04
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 230 well A05 (strain 22777)


title: SLAM Project Data: Synthetic Lethality with hst4-rep2

description:
Internal identifier for dataset: SL/070126/3
Original datafile name: 070126_228_C03_SWAP_3.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.319
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.80 3.14 3.36
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with arg81

description:
Internal identifier for dataset: SL/100623/7
Original datafile name: 255795A03_532.pair
Original datafile2 name: 255795A03_635.pair
SD of values from reference genes: 0.528
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.49 1.35 1.49
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 241 well B07 (strain 26497)


title: SLAM Project Data: Synthetic Lethality with hst3

description:
Internal identifier for dataset: SL/050215/3.11
Original datafile name: 050215_207E4_EPh2ul.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.579
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.46 1.81 1.98
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


description: Gene expression data from D2957 cells exposed to 1.25mM H2O2 after 60 min, biological rep1


title: SLAM Project Data: Synthetic Lethality with aro9-rep2

description:
Internal identifier for dataset: SL/090402/20
Original datafile name: 090402NG142644A04_532.pair
Original datafile2 name: 090402NG142644A04_635.pair
SD of values from reference genes: 0.494
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.11 2.05 2.14
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


title: SLAM Project Data: Synthetic Lethality with hst1

description:
Internal identifier for dataset: SL/050513/5
Original datafile name: 050513_209_F07.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.413
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.02 1.82 2.35
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well F07 (strain 21760)


description: Gene expression data from D2957 cells exposed to 1.25mM H2O2 after 5 min, biological rep3


title: SLAM Project Data: Synthetic Lethality with hsp104

description:
Internal identifier for dataset: SL/050517/5
Original datafile name: 050517_202_A12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.682
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.53 1.42 1.38
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 202 well A12 (strain 21514)


title: SLAM Project Data: Synthetic Lethality with hsc82

description:
Internal identifier for dataset: SL/050616/7
Original datafile name: 050616_205_C04.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.320
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.00 2.40 2.65
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well C04 (strain 20771)


description: Gene expression data from D2957 cells exposed to 1.25mM H2O2 after 5 min, biological rep2


title: SLAM Project Data: Synthetic Lethality with hrd1

description:
Internal identifier for dataset: SL/050408/2
Original datafile name: 050408_209_B1.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.648
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.09 1.63 1.66
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 209 well B01 (strain 21704)


title: SLAM Project Data: Synthetic Lethality with hrt3

description:
Internal identifier for dataset: SL/041117/6
Original datafile name: 041117_203_C7.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.496
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.89 1.00 1.98
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 203 well C07 (strain 22708)


description: Gene expression data from D2957 cells exposed to 1.25mM H2O2 after 5 min, biological rep1


title: SLAM Project Data: Synthetic Lethality with aro8

description:
Internal identifier for dataset: SL/100407/5
Original datafile name: 308423A01_532.pair
Original datafile2 name: 308423A01_635.pair
SD of values from reference genes: 0.407
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.78 2.25 2.29
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate  well  (strain NA)


title: SLAM Project Data: Synthetic Lethality with aps1

description:
Internal identifier for dataset: SL/090402/4
Original datafile name: 090402NG142637A04_532.pair
Original datafile2 name: 090402NG142637A04_635.pair
SD of values from reference genes: 0.269
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.09 3.40 3.79
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 219 well H01 (strain 24119)


title: SLAM Project Data: Synthetic Lethality with aqy1

description:
Internal identifier for dataset: SL/100420/6
Original datafile name: 308370A02_532.pair
Original datafile2 name: 308370A02_635.pair
SD of values from reference genes: 0.350
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.64 2.06 2.67
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 231 well E01 (strain 25607)


title: SLAM Project Data: Synthetic Lethality with apl3

description:
Internal identifier for dataset: SL/100428/3
Original datafile name: 310193A03_532.pair
Original datafile2 name: 310193A03_635.pair
SD of values from reference genes: 0.331
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.33 1.72 2.26
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 232 well G09 (strain 23063)


description: Gene expression data from D2957 unexposed control cells after 60 min, biological rep3


description: Gene expression data from D2957 unexposed control cells after 60 min, biological rep2


title: SLAM Project Data: Synthetic Lethality with apl2

description:
Internal identifier for dataset: SL/091103/8
Original datafile name: 091103NG300069A04_532.pair
Original datafile2 name: 091103NG300069A04_635.pair
SD of values from reference genes: 0.367
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.12 2.81 2.64
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 222 well G05 (strain 24985)


title: SLAM Project Data: Synthetic Lethality with hpc2

description:
Internal identifier for dataset: SL/050923/11
Original datafile name: 050923_211_H12.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.467
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.84 1.12 2.06
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well H12 (strain 23355)


title: SLAM Project Data: Synthetic Lethality with hpt1

description:
Internal identifier for dataset: SL/061018/4
Original datafile name: 061018_214_A07.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.290
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.54 2.89 3.19
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 214 well A07 (strain 24235)


title: SLAM Project Data: Synthetic Lethality with hpa3

description:
Internal identifier for dataset: SL/070629/4
Original datafile name: 070629_215_A01_4.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.756
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.40 1.42 1.55
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well A01 (strain 20308)


title: SLAM Project Data: Synthetic Lethality with hsp42

description:
Internal identifier for dataset: SL/050916/4
Original datafile name: 050916_228_A07.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.572
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.59 1.28 1.26
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well A07 (strain 23529)

value: MATa/alpha ura3delta0 leu2delta his3delta1 lys2delta0/LYS2 met15delta0/MET15 can1delta::LEU2-MFA1pr-HIS3/CAN1 xxx::kanMX/XXX


title: SLAM Project Data: Synthetic Lethality with hos3

description:
Internal identifier for dataset: SL/050713/2
Original datafile name: 050713_211_D03.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.536
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.15 1.08 1.36
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 211 well D03 (strain 22136)


description: Gene expression data from D2957 unexposed control cells after 60 min, biological rep1


title: SLAM Project Data: Synthetic Lethality with hos2

description:
Internal identifier for dataset: SL/050909/8
Original datafile name: 050909_228_G05.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.462
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.46 2.07 1.99
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 228 well G05 (strain 24561)


description: Gene expression data from D2957 unexposed control cells at 0 min, biological rep3


title: SLAM Project Data: Synthetic Lethality with ape2

description:
Internal identifier for dataset: SL/090811/7
Original datafile name: 090811NG261130A03_532.pair
Original datafile2 name: 090811NG261130A03_635.pair
SD of values from reference genes: 0.242
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 3.56 3.96 4.10
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).


description: Gene expression data from D2957 unexposed control cells at 0 min, biological rep2


description: Gene expression data from D2957 unexposed control cells at 0 min, biological rep1


title: SLAM Project Data: Synthetic Lethality with hos1

description:
Internal identifier for dataset: SL/050909/13
Original datafile name: 050909_242_E01.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.708
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 0.53 1.42 1.35
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 242 well E01 (strain 25487)


title: SLAM Project Data: Synthetic Lethality with hlj1

description:
Internal identifier for dataset: SL/050623/2
Original datafile name: 050623_205_A03.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.324
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.38 2.01 2.76
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 205 well A03 (strain 20744)


title: SLAM Project Data: Synthetic Lethality with hog1

description:
Internal identifier for dataset: SL/050422/3
Original datafile name: 050422_203_D10.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.444
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.54 1.72 1.99
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 203 well D10 (strain 22724)


title: SLAM Project Data: Synthetic Lethality with hmf1

description:
Internal identifier for dataset: SL/070112/6
Original datafile name: 070112_215_E10_6.gpr
Original datafile2 name: <none>
SD of values from reference genes: 0.427
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 2.39 2.42 2.66
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 215 well E10 (strain 20193)


title: SLAM Project Data: Synthetic Lethality with apa1

description:
Internal identifier for dataset: SL/090317/2
Original datafile name: 090317NG142357A02_532.pair
Original datafile2 name: 090317NG142357A02_635.pair
SD of values from reference genes: 0.499
QueryDeletion::URA3 selection scores (want >> 1; UpTag|DnTag|combined): 1.86 2.14 2.25
For methodological details, please see the following PubMed IDs: 9483801 (BY4743 strain background), 10436161 (Yeast Knockout strain collection), 11743205 (mating-type-specific selection), 15525520 (the "dSLAM" selection scheme), 15994458 (asymmetric PCR), 17060357 (spatial normalization), 17189863 (Methods paper), 18392971 (Methods Mol. Biol. chapter).

value: Plate 219 well A12 (strain 23457)