title: Vehicle-immunized lung - 48 hr - repeat 5 - mAdbID:117571

city: University Park

first: A.

middle: Catharine

last: Ross

address: 110 Chandlee Laboratory

department: Nutritional Sciences

institute: Penn State

description: mAdb experiment ID: 117571

hyb_protocol: Affymetrix Hybridization Protocol Other: Mouse 430 2.0 array with Affymetrix IVT was performed at the National Cancer Institute (NCI) Microarray Facility (Frederick, MD).

scan_protocol: Affymetrix Scanning Protocol Other: The arrays were scanned at 488 nm at 11-micron resolution using an Affymetrix Gene Chip Scanner.

data_processing:
Data Processing Protocol
Calculation Method: Data were analyzed using NCI’s mAdb software (http://nciarray.nci.nih.gov/) and transformed by centering the signal median and setting the signal floor to 1.

source_name: Vehicle-immunized lung - 48 hr

label_protocol:
Affymetrix Labeling Protocol
Other: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from mRNA.

extract_protocol:
TRIzol Extraction Protocol
Other: Lung RNA was isolated with TRIzol (Invitrogen), purified using TRIzol LS (Invitrogen), and diluted to 50 ng/10 ul.

treatment_protocol: In-vivo treatment: Mice were vehicle-immunized with PBS 5 days before infection. Mice were infected with 5 x 10(3) Colony Forming Units (CFU) of Streptococcus pneumoniae, serotype 3. Lung tissue was collected 48 hours after infection.

tag: strain

value: BALB/c

tag: gender

value: female

tag: age

value: 8 week old

value: Lung

tag: disease state

value: Pneumonia


title: PPS3+LPS co-immunized lung - 48 hr - repeat 3 - mAdbID:117562

status: Public on Mar 29 2013

type: RNA

state: PA

country: USA

description: mAdb experiment ID: 117562

label: biotin

molecule: total RNA

organism: Mus musculus

source_name: PPS3+LPS co-immunized lung - 48 hr

treatment_protocol: In-vivo treatment: Mice were immunized with serotype 3 polysaccharide (PPS3) (i.p. 0.5 ug dose of PPS3 in 0.5 mL PBS) combined with lipopolysaccharide (LPS) purified from Pseudomonas aeruginosa (0.1 ug/g body weight) 5 days before infection. Mice were infected with 5 x 10(3) Colony Forming Units (CFU) of Streptococcus pneumoniae, serotype 3. Lung tissue was collected 48 hours after infection.

tag: tissue


title: IBC#9 (RNA)

city: Houston

first: Takahiro

last: Kogawa

state: TX

address: 1515 Holcomb Blvd

department: Breast Medical

institute: MD Anderson

hyb_protocol: Cy3-labelled cRNA was fragmented at 60°C for 30 minutes according to the manufacturer's instructions. On completion of the fragmentation reaction, 100 µl of fragmentation mixture were hybridized to Agilent Whole Human Genome Oligo Microarrays (G4112F) for 17 hours at 65°C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent).

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505B) using one color scan setting for 4x44k array slides (Scan resolution 5um, Dye channel is set to Green and Green PMT is set to XDR Hi 100%, XDR Lo 10%).

data_processing: Extract tif images using the Feature Extraction software FE9.5 by GE1-v5_95 protocols.  Normalization was performed using global-normalization methods. Two technical replicates were integrated with mean.

organism: Homo sapiens

source_name: IBC, core-biopsy

label_protocol: RNA samples were labeled using the Low Input Quick Amp Labeling kit (Agilent Technologies) according to the manufacturer's instructions.

extract_protocol: Total RNA was extracted using the RNeasy micro kit (Qiagen; Valencia, CA, USA), and quality was characterized with BioAnalyzer (Agilent Technologies; Waldbronn, Germany).

treatment_protocol: For tumor samples, 5–20 frozen sections of biopsy (16 μm thick) were manually microdissected. Under the guidance of a pathologist, normal tissue was removed leaving tumor cells comprising greater than 90% of the specimen. For normal breast samples, 40–60 frozen sections of surgical specimen (16 μm thick) were subjected for microdissection manually.

tag: sample type

value: IBC

tag: er


title: NB_E_358

city: Heidelberg

first: Thomas

last: Wolf

address: Im Neuenheimer Feld 580

country: Germany

institute: DKFZ

hyb_protocol: Hybridization was performed following the manufacturer's protocol. In brief, 1650 ng of Cy3-labeled cRNA was hybridized on 4x44K custom microarrays using Agilent's High-RPM Gene Expression Hyb Kit. Hybridization was performed for 17 hours at 65°C in a rotating hyb oven at 10 rpm according the company's recommendations.

scan_protocol: After washing and scanning, resulting TIFF-images were processed using Agilent's Feature Extraction software Version 9.5.1.

data_processing: Data normalization using the quantile algorithm, Reference: G. K. Smyth. Limma: linear models for microarray data. In: R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, W. Huber (eds.) Bioinformatics and Computational Biology Solutions using R and Bioconductor. Springer, New York, 2005. pp. 397-420.

source_name: tumor sample

label_protocol: Labeling was performed according to Agilent's recommentdations. In brief, 1µg total of tumor RNA was linearily amplified and labeled with Cy3 using Agilent's one-color Quick Amp Labeling Kit following the instructions of the protocol.

extract_protocol: 30-60mg of snap-frozen neuroblastoma specimen was cryo-sliced and were homogenized in TRIzol reagent (Invitrogen, Karlsruhe, Germany) using the FastPrep FP120 cell disruptor (Qbiogene, Inc, Carlsbad, CA, USA).Total RNA was isolated following the TRIzol protocol (Invitrogen) and RNA integrity was assessed using the 2100 Bioanalyzer (Agilent, Waldbronn, Germany). Only samples with an RNA Integrity Number >7.5 were taken for further analysis.

treatment_protocol: All neuroblastoma samples of this set were obtained prior to any cytotoxic treatment and were snap-frozen immediately after surgery. Prior to RNA extraction tumor cell content was checked by a pathologist and only samples with >60% tumor content were processed further.

value: Neuroblastoma

tag: Sex

value: M

tag: mycn (1

value: not amplified; Amp:amplified; n.a.:not available):1

tag: Stage

tag: age (1

value: <18 months; 2:>18 months):1


title: PPS3+LPS co-immunized lung - 48 hr - repeat 4 - mAdbID:117567

description: mAdb experiment ID: 117567


title: NB_E_357

value: F

value: <18 months; 2:>18 months):2


title: IBC#8 (RNA)

description: Two technical replicates were integrated with mean.


title: Non-infected lung - repeat 4 - mAdbID:117565

description: mAdb experiment ID: 117565

source_name: Non-infected lung

treatment_protocol: In-vivo treatment: Non-infected mice were mock-infected with 50 µL of PBS. Lung tissue was collected 48 hours after mock-infection.


title: PPS3+LPS co-immunized lung - 7 days - repeat 3 - mAdbID:117563

description: mAdb experiment ID: 117563

source_name: PPS3+LPS co-immunized lung - 7 days

treatment_protocol: In-vivo treatment: Mice were immunized with serotype 3 polysaccharide (PPS3) (i.p. 0.5 ug dose of PPS3 in 0.5 mL PBS) combined with lipopolysaccharide (LPS) purified from Pseudomonas aeruginosa (0.1 ug/g body weight) 5 days before infection. Mice were infected with 5 x 10(3) Colony Forming Units (CFU) of Streptococcus pneumoniae, serotype 3. Lung tissue was collected 7 days after infection.


title: PPS3+LPS co-immunized lung - 7 days - repeat 4 - mAdbID:117568

description: mAdb experiment ID: 117568


title: NB_E_356


title: Vehicle-immunized lung - 48 hr - repeat 4 - mAdbID:117566

description: mAdb experiment ID: 117566


title: IBC#7 (RNA)


title: Vehicle-immunized lung - 48 hr - repeat 3 - mAdbID:117561

description: mAdb experiment ID: 117561


title: Non-infected lung - repeat 3 - mAdbID:117560

description: mAdb experiment ID: 117560


title: IBC#6 (RNA)


title: Non-infected lung - repeat 2 - mAdbID:117555

description: mAdb experiment ID: 117555


title: PPS3+LPS co-immunized lung - 7 days - repeat 2 - mAdbID:117558

description: mAdb experiment ID: 117558


title: PPS3+LPS co-immunized lung - 48 hr - repeat 2 - mAdbID:117557

description: mAdb experiment ID: 117557


title: NB_E_354


title: IBC#5 (RNA)


title: IBC#4 (RNA)


title: PPS3+LPS co-immunized lung - 48 hr - repeat 1 - mAdbID:117552

description: mAdb experiment ID: 117552


title: Vehicle-immunized lung - 48 hr - repeat 2 - mAdbID:117556

description: mAdb experiment ID: 117556


title: PPS3+LPS co-immunized lung - 7 days - repeat 1 - mAdbID:117553

description: mAdb experiment ID: 117553


title: NB_E_351


title: NB_E_353


title: NB_E_355


title: NB_E_352


title: Non-infected lung - repeat 1 - mAdbID:117550

description: mAdb experiment ID: 117550


title: IBC#3 (RNA)


title: NB_E_350


title: IBC#2 (RNA)


title: NB_E_349


title: Vehicle-immunized lung - 48 hr - repeat 1 - mAdbID:117551

description: mAdb experiment ID: 117551


title: Gs_MKP_FL_3

city: Nedlands

first: Andrew

middle: Jonghan

last: Woo

state: WA

address: 6 Verdun Street

department: UWA Centre for Medical Research

country: Australia

institute: University of Western Australia

description: Expression data from fetal liver megakaryocyte progenitors

hyb_protocol: According to standard Affymetrix protocols.

data_processing: Data were processed using Gene expression index (version 1.0.0) via Galaxy/Cistrome platform using MAS5 as normalization method.

source_name: Fetal liver MkP, biological rep03

growth_protocol: Bone marrows were harvested from 12-18 weeks old adult mice and fetal livers were harvested at E13.5

extract_protocol: Extraction of total RNA was performed using Qiagen RNeasy Plus micro Kit according to the manufacturer's instructions.

treatment_protocol: Harvested tissues were placed into single cell suspension and subsequently flow sorted for megakaryocyte progenitor population (lin-, Sca-1-, c-kit+, CD150+, CD41+).

tag: cell type

value: flow cytometry sorted lin-, Sca-1-, c-kit+, CD150+, CD41+ MkP cells

value: fetal liver

tag: genotype/variation


title: Gs_MKP_BM_3

description: Expression data from bone marrow megakaryocyte progenitors

scan_protocol: According to standard Affymetrix protocols.

source_name: Bone marrow MkP, biological rep03

value: bone marrow


title: non-IBC#19 (RNA)

source_name: non-IBC Breast cancer, specimen

value: non-IBC


title: Gs_MKP_FL_1

source_name: Fetal liver MkP, biological rep01

label_protocol: According to standard Affymetrix protocols.


title: Gs_MKP_FL_2

source_name: Fetal liver MkP, biological rep02


title: NB_E_348


title: Gs_MKP_BM_2

source_name: Bone marrow MkP, biological rep02


title: non-IBC#20 (RNA)


title: IBC#1 (RNA)


title: WT_MKP_FL_3

value: wild type


title: Gs_MKP_BM_1

source_name: Bone marrow MkP, biological rep01


title: WT_MKP_FL_2


title: NB_E_347


title: NB_E_346


title: WT_MKP_FL_1


title: NB_E_345


title: non-IBC#16 (RNA)


title: WT_MKP_BM_1


title: non-IBC#17 (RNA)


title: WT_5

city: Cambridge

first: Joseph

last: Loureiro

state: MA

address: 220 Massaxhusetts Ave.

institute: Novartis Institutes for Biomedical Research

hyb_protocol: reconcentrated before labelling // ivt incubation: 12h.

scan_protocol: AffyScannerGCS3000 - Affymetrix GCAS One-Cycle protocol

data_processing: R/BioConductor/LIMMA package using rma normalized data

label: Biotin/SAPE

source_name: wild-type heart

label_protocol: Biotin/SAPE

growth_protocol: Embryonic hearts were collected from E18.5 wild-type or 2lox/2lox pups.

extract_protocol: A QIAGEN Rneasy Mini Kit was employed to isolate total RNA, employing the manufacturer's recommended protocol

treatment_protocol: Intact E18.5 hearts were isolated from pups from timed matings, using a dissecting microscope.  The tissue was lysed with lysis buffer provided with a QIAGEN Rneasy kit, and disrupted using a QIAGEN TissueLyser for 30 seconds at 30Hz

tag: developmental stage

value: embryonic heart


title: WT_MKP_BM_2


title: WT_MKP_BM_3


title: NB_E_344


title: WT_3


title: non-IBC#15 (RNA)


title: WT_2


title: WT_4


title: KO_2

source_name: Lsd1-hypomorphic heart

value: 2lox/2lox; Lsd1 knock-out


title: non-IBC#13 (RNA)


title: non-IBC#12 (RNA)


title: KO_1


title: NB_E_342


title: NB_E_343


title: WT_1


title: non-IBC#11 (RNA)


title: NB_E_341


title: NB_E_340


title: KO_3


title: non-IBC#14 (RNA)


title: CCE/R_VPA vs CONTROL_rep4

city: Birmingham

first: John

last: Halsall

address: Medical School, Vincent Drive

department: Cancer and Genomic Sciences

country: United Kingdom

institute: University of Birmingham

hyb_protocol: 80pmol of Cy3 and Cy5 labelled cDNA were combined and ethanol precipitated.  Microarrays were pretreated with the Pronto background reduction kit (Corning).  Hybridisatrion reactions contained 17ul cDNA, 16ul formamide, 8ug Cot-1 DNA, 6.4ug Poly d(A), 0.08% SDS, 0.6M NaCl, 60mM C6H5Na3O7, pH7 in a total volume of 80ul. The mixture was denatured at 95ºC for 2 minutes and left to cool at room temperature. It was then applied to the slide in an incubation chamber and incubated for 20 hours at 42C.  Slides were then sequentially washed and dried by centrifugation.

scan_protocol: Slides were scanned using a Genepix 4000B scanner.

data_processing: Scans were aligned automatically using Genepix and then manually scanned to check alignment.  Raw data (gpr) files were produced using Genepix and were lowess normalised using DNMAD software. Significant gene lists were generated in TM4-MeV software using T-Tests.

source_name: CCE/R, untreated

label_protocol: 200ng of cDNA was labelled with eith Cy3 or Cy5 using the Bioprime random priming labelling kit (Invitrogen), according to the manufacturers instructions

growth_protocol: CCE/R cells were cultured in Dulbecco’s modified Eagles medium (DMEM) supplemented with 20% foetal calf serum, 1x penicillin/streptomycin, 1x L-glutamine, 1x non-essential amino acids, 0.25% 2-mercaptoethanol and 1U/ul ESGRO

extract_protocol: Total RNA was extracted from cells using the RNeasy minikit, including on column DNase treatment (Qiagen)

treatment_protocol: Cells were treated with 1mM valproic acid for 8 hours. 1M valproic acid stock in water was prepared from the sodium salt.

tag: cell line

value: CCE/R

tag: treatment

value: untreated

value: embryonic stem cell

value: male

source_name: CCE/R, 1mM VPA, 8 hours

value: 1mM VPA


title: Tye7

type: protein

city: Durham

first: Raluca

last: Gordan

state: NC

address: 101 Science Dr, CIEMAS 2179

department: Center for Genomic and Computational Biology

institute: Duke University

hyb_protocol: Double-stranded microarrays were first pre-moistened in PBS / 0.01% Triton X-100 for 5 min and blocked with PBS / 2% (wt/vol) nonfat dried milk (Sigma) for 1 h. Microarrays were then washed once with PBS / 0.1% (vol/vol) Tween-20 for 5 min and once with PBS / 0.01% Triton X-100 for 2 min. Proteins were diluted to 200 or 100 nM in a 175-μl protein binding reaction containing PBS / 2% (wt/vol) milk / 51.3 ng/μl salmon testes DNA (Sigma) / 0.2 μg/μl bovine serum albumin (New England Biolabs). Preincubated protein binding mixtures were applied to individual chambers of a four-chamber gasket cover slip in a steel hybridization chamber (Agilent), and the assembled microarrays were incubated for 1 h at room temperature. Microarrays were again washed once with PBS / 0.5% (vol/vol) Tween-20 for 3 min, and then once with PBS / 0.01% Triton X-100 for 2 min. Alexa-488-conjugated rabbit polyclonal antibody to GST (Invitrogen) was diluted to 50 μg/ml in PBS / 2% milk and applied to a single-chamber gasket cover slip (Agilent), and the assembled microarrays were again incubated for 1 h at 20°C. Finally, microarrays were washed twice with PBS / 0.05% (vol/vol) Tween-20 for 3 min each, and once in PBS for 2 min. After each hour-long incubation step, microarrays and cover slips were disassembled in a staining dish filled with 500 ml of the first wash solution. All washes were performed in Coplin jars on an orbital shaker at 125 r.p.m. Immediately following each series of washes, microarrays were rinsed in PBS (slowly removed over approximately 10 seconds) to ensure removal of detergent and uniform drying.

scan_protocol: Protein-bound microarrays were scanned to detect Alexa-488-conjugated antibody (488 nm ex, 522 nm em) using at least two  different laser power settings to best capture a broad range of signal intensities and ensure signal intensities below saturation for all spots. Separately, slides were scanned after primer extension to quantify the amount of incorporated Cy3-conjugated dUTP (543 nm ex, 570 nm em). Microarray TIF images were analyzed using GenePix Pro version 7.0 software (Molecular Devices), bad spots were manually flagged and removed, and data from multiple Alexa 488 scans of the same slide were combined using masliner (MicroArray LINEar Regression) software.

data_processing: To correct for any possible non-uniformities in protein binding, we adjusted the Alexa 488 signals according to their positions on the microarray. We calculated the median normalized intensity of the 15 x 15 block centered on each spot and divided the spot's signal by the ratio of the median within the block to the median over the entire chamber. Next, we adjusted the PBM log intensities on this validation array to be in the same range as the values on our original Cbf1/Tye7 array design (Gordan et al 2013), which was scanned using a diiferent microarray scanner. For this mapping we used the probes that are in common between this validation array design and our initial PBM array desgin (Gordan et al 2013).

label: Alexa 488

molecule: protein

organism: Saccharomyces cerevisiae

source_name: Yeast Tye7

label_protocol: Proteins were tagged with N-terminal GST by cloning. Protein-bound arrays were incubated with Alexa-488-conjugated rabbit polyclonal antibody to GST (Invitrogen).

growth_protocol: Plasmids were transformed into BL21 (DE3) expression strain of E. coli (New England BioLabs).  Overnight bacterial culture (5 mL) was diluted into 1 L LB (10 g BACTO Tryptone (BD); 5 g BACTO Yeast Extract (BD); 10 g NaCl; pH 7.5) and grown to OD 0.6 (600 nm visible light). Protein expression was then induced with 1 mM isopropyl β-D-1-thiogalactopyranoside (IPTG) for 3 hours at 37ºC. Cells were pelleted by centrifugation @ 12,000 rpm for 10 min and stored at -20ºC. Each pellet (from 1 L culture) was thawed in 15 ml lysis buffer (150 mM Tris-HCl, pH 8.0; 150 mM NaCl; 2 mM dithiothreitol (DTT); 1 tablet complete Mini, EDTA-free protease inhibitor cocktail (Roche, #11 836 170 001); 50 uM C4H10O6Zn (zinc acetate); 1 mg/ml chicken egg white lysozyme (Sigma, # L6876)) and subjected to two freeze-thaw cycles in dry ice/ethanol. To digest DNA, to each 15 ml lysis solution was added 10 uL recombinant, RNase-free DNAse I (Roche, #04 716 728 001, 10 U/ul), 30 uL 1 M MgCl2, and 2 mL 10% Triton X-100,  and digested at room temperature until solution was runny (~1 hr).  Solutions were centrifuged at 12,000 rpm for 25 min at 4ºC, and supernatant was used for protein purification.

extract_protocol: Full-length open reading frames were cloned into the Gateway pDEST15 (N-terminal GST-tag) expression vector by recombinational cloning from previously created pENTR clones. All proteins were produced by over-expression in E. coli BL21 (DE3) cells (New England BioLabs), and purified by FPLC (AKTAprime plus) using GSTrapTM FF affinity columns (GE Healthcare). Anti-GST Western blots were performed to assess protein quality and concentration.

tag: transcription factor


title: CCE/R_VPA vs CONTROL_rep2


title: CCE/R_VPA vs CONTROL_rep3


title: CCE/R_VPA vs CONTROL_rep1


title: Cbf1

source_name: Yeast Cbf1


title: Non-infected lung - repeat 5 - mAdbID:117570

description: mAdb experiment ID: 117570

tag: strain

value: BALB/c

value: female

value: 8 week old

value: Lung


title: Normal#4 (DNA)

type: genomic

description: Data was merged high (_100) and low (_10) PMT data

hyb_protocol: Labeled test and reference DNAs were ethanol precipitated in the presence of Cot-1 DNA, redissolved in a hybridization mix, and denatured at 70C for 10 min. After incubation at 42C for 5 min, the mixture was applied to Whole Genome DNA Microarray (LinkGenomics) covered with a MAUI Mixer hybridization chamber (Biomicro systems). After incubation at 42C for 48 hours, the slides were then washed with 2xSSC/0.1%SDS buffer and 0.1xSSC/0.1%SDS buffer several times. After rinsing with 0.01xSSC buffer and air-drying.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505B) using two color scan setting (Scan resolution 10um, Dye channel is set to Red/Green and PMT is set to Hi 100%, Lo 10%).

data_processing: Extract tif images using the Gene-Pix Pro 4.0 imaging software (Axon Instruments; Union City, CA, USA).  High PMT data and Low PMT data were marged. Normalization was performed using global-normalization methods.

label: Alexa 555

molecule: genomic DNA

source_name: normal breast , specimen

label_protocol: Alu I and Rsa I-restricted genomic DNAs were labeled by random priming with Alexa555-dCTP (test DNA) and Alexa647-dCTP (reference DNA) using the BioPrime Plus ArrayCGH Indirect Genomic Labeling System (Invitrogen).

extract_protocol: Genomic DNA was extracted using the Quick Gene SP-kit DNA tissue (Fujifilm; Tokyo, Japan), and quality was characterized with Agarose gel electrophoresis. Human Female Genomic DNA (Novagen; Madison, WI, USA) was used for normal reference DNA.

value: Normal

label: Alexa 647

source_name: Human Female Genomic DNA

tag: tag

value: Novagen Catalogue Number:70605


title: Normal#5 (DNA)


title: non-IBC#9 (RNA)


title: NB_E_338

source_name: tumor sample

value: Neuroblastoma

value: M

value: not amplified; Amp:amplified; n.a.:not available):1

value: <18 months; 2:>18 months):1


title: NB_E_339

value: not amplified; Amp:amplified; n.a.:not available):Amp

value: <18 months; 2:>18 months):2


title: non-IBC#10 (RNA)

value: non-IBC


title: non-IBC#8 (RNA)


title: Cbf1 at 100 nM concentration

scan_protocol: Protein-bound microarrays were scanned to detect Alexa-488-conjugated antibody (488 nm ex, 522 nm em) using at least three different laser power settings to best capture a broad range of signal intensities and ensure signal intensities below saturation for all spots. Separately, slides were scanned after primer extension to quantify the amount of incorporated Cy3-conjugated dUTP (543 nm ex, 570 nm em). Microarray TIF images were analyzed using GenePix Pro version 6.0 software (Molecular Devices), bad spots were manually flagged and removed, and data from multiple Alexa 488 scans of the same slide were combined using masliner (MicroArray LINEar Regression) software.

data_processing: To correct for any possible non-uniformities in protein binding, we adjusted the Alexa 488 signals according to their positions on the microarray. We calculated the median normalized intensity of the 15 x 15 block centered on each spot and divided the spot's signal by the ratio of the median within the block to the median over the entire chamber.

tag: protein concentration


title: Normal#3 (DNA)


title: NB_E_336


title: non-IBC#6 (RNA)


title: non-IBC#5 (RNA)


title: non-IBC#7 (RNA)


title: NB_E_337


title: Normal#2 (DNA)


title: Cbf1 at 200 nM concentration


title: saline_PBS_6dpi_rep2

city: Obihiro

first: Ryo

last: Takano

state: Hokkaido

address: Inada-cho

department: National Research Center for Protozoan Diseases

country: Japan

institute: Obihiro University of Agriculture and Veterinary Medicine

description: Gene expression in the lungs of saline-treated mice at 6 days post-mock-infection.

hyb_protocol: 600 ng of Cy3-labelled cRNA (specific activity >6.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 25 ul containing 25x Agilent fragmentation buffer and 10x Agilent blocking agent following the manufacturer's instructions. On completion of the fragmentation reaction, 25 ul of 2x Agilent GE hybridization buffer HI-RPM was added to the fragmentation mixture and hybridized to Agilent SurePrint G3 Mouse GE 8x60K Microarrays (G4852A) for 17 hours at 65 °C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37 °C GE Wash buffer 2 (Agilent), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned with an Agilent's High-Resolution Microarray Scanner using one color scan setting for 8x60k array slides (Scan Area 61x21.6 mm, Scan resolution 3um, Dye channel is set to Green).

data_processing: The scanned images were analyzed with Agilent Feature Extraction Software ver. 10.7.3.1. using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities.

source_name: Mouse lung, mock-treated with saline, mock-infected with PBS, 6 days post-infection

label_protocol: Cy3-labeled cRNA probe synthesis was initiated with 100 ng of total RNAs by using the Agilent Low Input Quick Amp Labeling kit, one color (Agilent Technologies).

extract_protocol: The lungs of mice were homogenized with TRIzol Reagent (Invitrogen) at a final concentration of 5% w/v. The homogenized materials were transferred to a fresh 1.5 ml tube to which chloroform-isoamyl alchol (5:1) was added. The tube was vortexed and then centrifuged for 15 min at 12,000 g at 4 °C. The resulting aqueous layer was subjected to RNA extraction by using RNeasy Mini kit columns (Qiagen) according to the manufacturer's instructions.

treatment_protocol: We conducted two types of experiments to determine the effects of b240 administration on host responses in mice. In both experiments, mice were orally mock-administered with saline or administered with heat-killed Lactobacillus pentosus b240 at a dose of 10 mg/mouse daily for 21 days prior to infection and for 14 days after infection or mock-infection. (i) To define the effects of b240 administration on gene expression, mice were infected with 10 MLD50 of CA04 virus on days 21 post-b240 administration and euthanized on days 1, 3, and 6 post-infection. (ii) To investigate the immune responses induced by b240 administration in the lungs of mice, mice were mock-infected with PBS on day 21 post-b240-administration and euthanized on days -7, 0, 1, 3, and 6 post-infection. These lung tissues were immediately frozen at -80°C until processing and subjected to microarray analysis.

tag: gender

value: lung

tag: b240 or saline treatment

value: saline

tag: ca04 or pbs treatment

value: PBS

tag: time

value: 6 days post-infection


title: IBC#19 (DNA)

source_name: IBC, core-biopsy

tag: sample type

value: IBC

tag: er


title: b240_PBS_6dpi_rep2

description: Gene expression in the lungs of b240-treated mice at 6 days post-mock-infection.

source_name: Mouse lung, treated with b240, mock-infected with PBS, 6 days post-infection

value: BALB/c

value: female

tag: tissue

value: Lactobacillus pentosus b240


title: b240_PBS_6dpi_rep3


title: saline_PBS_6dpi_rep1


title: b240_PBS_6dpi_rep1


title: b240_CA04_6dpi_rep3

description: Gene expression in the lungs of b240-treated mice at 6 days post-CA04-infection.

source_name: Mouse lung, treated with b240, infected with CA04, 6 days post-infection

value: CA04 virus


title: b240_CA04_6dpi_rep2


title: non-IBC#3 (RNA)

source_name: non-IBC Breast cancer, specimen


title: Normal#1 (DNA)

value: Normal

value: Novagen Catalogue Number:70605


title: IBC#17 (DNA)


title: saline_PBS_6dpi_rep3


title: saline_CA04_6dpi_rep3

description: Gene expression in the lungs of saline-treated mice at 6 days post-CA04-infection.

source_name: Mouse lung, mock-treated with saline, infected with CA04, 6 days post-infection


title: b240_CA04_6dpi_rep1


title: non-IBC#4 (RNA)


title: non-IBC#1 (RNA)


title: saline_CA04_6dpi_rep1


title: Tye7 at 200 nM concentration


title: non-IBC#18 (RNA)


title: saline_CA04_6dpi_rep2


title: b240_PBS_3dpi_rep2

description: Gene expression in the lungs of b240-treated mice at 3 days post-mock-infection.

source_name: Mouse lung, treated with b240, mock-infected with PBS, 3 days post-infection

value: 3 days post-infection


title: non-IBC#2 (RNA)


title: saline_PBS_3dpi_rep2

description: Gene expression in the lungs of saline-treated mice at 3 days post-mock-infection.

source_name: Mouse lung, mock-treated with saline, mock-infected with PBS, 3 days post-infection


title: IBC#20 (DNA)


title: IBC#16 (DNA)


title: saline_PBS_3dpi_rep3


title: b240_PBS_3dpi_rep3


title: b240_PBS_3dpi_rep1


title: IBC#15 (DNA)


title: IBC#14 (DNA)


title: IBC#12 (DNA)


title: IBC#11 (DNA)


title: saline_PBS_3dpi_rep1


title: b240_CA04_3dpi_rep3

description: Gene expression in the lungs of b240-treated mice at 3 days post-CA04-infection.

source_name: Mouse lung, treated with b240, infected with CA04, 3 days post-infection


title: saline_CA04_3dpi_rep3

description: Gene expression in the lungs of saline-treated mice at 3 days post-CA04-infection.

source_name: Mouse lung, mock-treated with saline, infected with CA04, 3 days post-infection


title: b240_CA04_3dpi_rep2


title: saline_CA04_3dpi_rep2


title: IBC#10 (DNA)


title: IBC#9 (DNA)


title: b240_CA04_1dpi_rep3

description: Gene expression in the lungs of b240-treated mice at 1 days post-CA04-infection.

source_name: Mouse lung, treated with b240, infected with CA04, 1 days post-infection

value: 1 days post-infection


title: IBC#13 (DNA)


title: saline_PBS_1dpi_rep3

description: Gene expression in the lungs of saline-treated mice at 1 days post-mock-infection.

source_name: Mouse lung, mock-treated with saline, mock-infected with PBS, 1 days post-infection


title: b240_CA04_3dpi_rep1


title: b240_PBS_1dpi_rep1

description: Gene expression in the lungs of b240-treated mice at 1 days post-mock-infection.

source_name: Mouse lung, treated with b240, mock-infected with PBS, 1 days post-infection


title: saline_PBS_1dpi_rep1


title: b240_PBS_1dpi_rep3


title: IBC#8 (DNA)


title: IBC#7 (DNA)


title: b240_PBS_1dpi_rep2


title: IBC#6 (DNA)


title: saline_CA04_3dpi_rep1


title: saline_PBS_1dpi_rep2


title: IBC#5 (DNA)


title: b240_PBS_0dpi_rep3

description: Gene expression in the lungs of b240-treated mice at 0 days post-mock-infection.

source_name: Mouse lung, treated with b240, mock-infected with PBS, 0 days post-infection

value: 0 days post-infection


title: b240_CA04_1dpi_rep2


title: saline_CA04_1dpi_rep2

description: Gene expression in the lungs of saline-treated mice at 1 days post-CA04-infection.

source_name: Mouse lung, mock-treated with saline, infected with CA04, 1 days post-infection


title: saline_CA04_1dpi_rep3


title: saline_CA04_1dpi_rep1


title: b240_CA04_1dpi_rep1


title: b240_PBS_0dpi_rep1


title: IBC#3 (DNA)

source_name: Human Female Genomic DNA


title: b240_PBS_0dpi_rep2


title: saline_PBS_0dpi_rep3

description: Gene expression in the lungs of saline-treated mice at 0 days post-mock-infection.

source_name: Mouse lung, mock-treated with saline, mock-infected with PBS, 0 days post-infection


title: IBC#2 (DNA)


title: IFNAR_uninf_2

city: Philadelphia

first: daniel

last: beiting

address: 380 S. University Ave

department: Pathobiology

institute: University of Pennsylvania

description: uninfected

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were quantile normalized without background subtraction using Illumina GenomeStudio V1.8

source_name: IFNAR2-/- BMMC, uninfected

label_protocol: Biotin labeled complementary RNA (cRNA) was made using the Illumina TotalPrep RNA Amplification Kit

growth_protocol: Bone marrow collected from femurs and tibias of WT or IFNAR2-/- mice was cultured in petri dishes for 5-6 days in DMEM media supplemented with antibiotics, 1mM non-essential amino acids, 1mM sodium pyruvate, 15% fetal calf serum, and 25% conditioned supernatant from L929 cells (source of M-CSF) in order to differentiate cells to macrophages.  After differentiation, cells were collected by scraping and were replated in tissue culture-treated 6-well plates.  Cells were allowed to adhere overnight, then were infected with a 1:1 MOI of either Toxoplasma or Neospora.  17 hours after infection, RNA was isolated from cells.

extract_protocol: Cells were lysed by treatement with Buffer RLT (Qiagen) and passage over QiaShredder columns (Qiagen).  Total RNA was isolated using the Qiagen Rneasy Plus kit.

treatment_protocol: RNA was immediately isolated from the cells 17 hours after infection.

value: bone marrow

value: macrophage

tag: infection

value: uninfected


title: IBC#1 (DNA)

source_name: IBC, core-biopsy


title: saline_PBS_0dpi_rep1

value: lung


title: IBC#4 (DNA)


title: b240_PBS_-7dpi_rep1

description: Gene expression in the lungs of b240-treated mice at -7 days post-mock-infection.

source_name: Mouse lung, treated with b240, mock-infected with PBS, -7 days post-infection

value: -7 days post-infection


title: IFNAR_uninf_1

description: uninfected

tag: cell type


title: saline_PBS_0dpi_rep2

value: saline

value: PBS


title: saline_PBS_-7dpi_rep2

description: Gene expression in the lungs of saline-treated mice at -7 days post-mock-infection.

source_name: Mouse lung, mock-treated with saline, mock-infected with PBS, -7 days post-infection


title: WT_uninf_2

description: uninfected

source_name: WT BMMC, uninfected

tag: genotype/variation

value: WT


title: b240_PBS_-7dpi_rep2

value: BALB/c


title: WT_uninf_1

description: uninfected


title: saline_PBS_-7dpi_rep1

value: female


title: IFNAR_Nc_2

description: infected

source_name: IFNAR2-/- BMMC, 17 hours post-infection, Neospora

value: Neospora


title: b240_PBS_-7dpi_rep3

value: Lactobacillus pentosus b240


title: non-IBC#20 (DNA)

description: Data was merged high (_100) and low (_10) PMT data

source_name: non-IBC Breast cancer, specimen

value: non-IBC


title: saline_PBS_-7dpi_rep3


title: non-IBC#19 (DNA)

value: Novagen Catalogue Number:70605


title: non-IBC#18 (DNA)


title: PCa, fresh-frozen, unique replicate 11SE321

city: VALENCIA

first: JOSE

middle: ANTONIO

last: LOPEZ-GUERRERO

address: C/PROF. BELTRAN BAGUENA, 8

department: LABORATORY OF MOLECULAR BIOLOGY

country: Spain

institute: FUNDACION INSTITUTO VALENCIANO DE ONCOLOGIA

description:
miRNA expression data from human prostate tissues.
11SE321
PCa, fresh-frozen, unique replicate

hyb_protocol: Affymetrix protocol in an hybridization oven at 48ºC and 60 rpm during 16h.GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the GeneChip Scanner 7G.

data_processing: The data were analyzed with Partek Genomics Suite v6.11 and miRNA QCsoftware.

source_name: PCa, fresh-frozen

label_protocol: Biotin. Following the FlashTag Biotin HSR RNA labelling kit protocol for Affymetrix GeneChip miRNA arrays (Genisphere®).

growth_protocol: Fresh-frozen tissues stored at -80ºC until RNA extraction

extract_protocol: miRVAna miRNA isolation Kit (Ambion) following the provider's instructions.

treatment_protocol: Samples were directly frozen in isopentane cooled in liquid nitrogen, and then stored at -80ºC.

tag: gleason score

tag: pt

value: Positive

tag: biobank

value: Biobank 2


title: PCa, fresh-frozen, unique replicate 11SE329

description:
miRNA expression data from human prostate tissues.
11SE329
PCa, fresh-frozen, unique replicate

value: Negative


title: PCa, fresh-frozen, unique replicate 11SE312

description:
miRNA expression data from human prostate tissues.
11SE312
PCa, fresh-frozen, unique replicate

value: Unknown


title: IFNAR_Nc_1

description: infected

value: bone marrow

value: macrophage


title: PCa, fresh-frozen, unique replicate 11SE322

description:
miRNA expression data from human prostate tissues.
11SE322
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE338

description:
miRNA expression data from human prostate tissues.
11SE338
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE323

description:
miRNA expression data from human prostate tissues.
11SE323
PCa, fresh-frozen, unique replicate


title: IFNAR_Tg_2

description: infected

source_name: IFNAR2-/- BMMC, 17 hours post-infection, Toxoplasma

value: Toxoplasma


title: non-IBC#16 (DNA)


title: PCa, fresh-frozen, unique replicate 11SE327

description:
miRNA expression data from human prostate tissues.
11SE327
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE326

description:
miRNA expression data from human prostate tissues.
11SE326
PCa, fresh-frozen, unique replicate


title: IFNAR_Tg_1

description: infected


title: non-IBC#17 (DNA)


title: PCa, fresh-frozen, unique replicate 11SE311

description:
miRNA expression data from human prostate tissues.
11SE311
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE334

description:
miRNA expression data from human prostate tissues.
11SE334
PCa, fresh-frozen, unique replicate


title: WT_Nc_1

description: infected

source_name: WT BMMC, 17 hours post-infection, Neospora


title: PCa, fresh-frozen, unique replicate 11SE310

description:
miRNA expression data from human prostate tissues.
11SE310
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE316

description:
miRNA expression data from human prostate tissues.
11SE316
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE314

description:
miRNA expression data from human prostate tissues.
11SE314
PCa, fresh-frozen, unique replicate


title: non-IBC#14 (DNA)


title: non-IBC#15 (DNA)


title: PCa, fresh-frozen, unique replicate 11SE317

description:
miRNA expression data from human prostate tissues.
11SE317
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE324

description:
miRNA expression data from human prostate tissues.
11SE324
PCa, fresh-frozen, unique replicate


title: WT_Nc_2

description: infected


title: non-IBC#13 (DNA)


title: WT_Tg_2

description: infected

source_name: WT BMMC, 17 hours post-infection, Toxoplasma


title: PCa, fresh-frozen, unique replicate 11SE315

description:
miRNA expression data from human prostate tissues.
11SE315
PCa, fresh-frozen, unique replicate


title: IBC#18 (DNA)

description: Data was merged high (_100) and low (_10) PMT data

value: IBC


title: WT_Tg_1

description: infected


title: non-IBC#12 (DNA)


title: non-IBC#11 (DNA)


title: PCa, fresh-frozen, unique replicate 11SE339

description:
miRNA expression data from human prostate tissues.
11SE339
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE340

description:
miRNA expression data from human prostate tissues.
11SE340
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE332

description:
miRNA expression data from human prostate tissues.
11SE332
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE313

description:
miRNA expression data from human prostate tissues.
11SE313
PCa, fresh-frozen, unique replicate


title: Normal prostate, fresh-frozen, unique replicate 11SE354

description:
miRNA expression data from human prostate tissues.
11SE354
Normal prostate, fresh-frozen, unique replicate

source_name: Normal prostate, fresh-frozen

value: Biobank 1


title: PCa, fresh-frozen, unique replicate 11SE330

description:
miRNA expression data from human prostate tissues.
11SE330
PCa, fresh-frozen, unique replicate


title: non-IBC#10 (DNA)


title: non-IBC#9 (DNA)


title: Normal prostate, fresh-frozen, unique replicate 11SE353

description:
miRNA expression data from human prostate tissues.
11SE353
Normal prostate, fresh-frozen, unique replicate


title: non-IBC#6 (DNA)


title: non-IBC#7 (DNA)


title: Normal prostate, fresh-frozen, unique replicate 11SE347

description:
miRNA expression data from human prostate tissues.
11SE347
Normal prostate, fresh-frozen, unique replicate


title: Normal prostate, fresh-frozen, unique replicate 11SE349

description:
miRNA expression data from human prostate tissues.
11SE349
Normal prostate, fresh-frozen, unique replicate


title: Normal prostate, fresh-frozen, unique replicate 11SE343

description:
miRNA expression data from human prostate tissues.
11SE343
Normal prostate, fresh-frozen, unique replicate


title: Normal prostate, fresh-frozen, unique replicate 11SE346

description:
miRNA expression data from human prostate tissues.
11SE346
Normal prostate, fresh-frozen, unique replicate


title: non-IBC#8 (DNA)


title: Normal prostate, fresh-frozen, unique replicate 11SE351

description:
miRNA expression data from human prostate tissues.
11SE351
Normal prostate, fresh-frozen, unique replicate


title: Comparison of the wild type with the osjar1-2 mutant 1 h after jasmonic acid treatment replicate 3

city: Tokyo

first: Kazunori

last: Okada

address: 1-1-1, Yayoi, Bunkyo-ku

department: Biotechnology Research Center

institute: The University of Tokyo

description: Biological replicate 3 of 3.

hyb_protocol: Agilent protocol G4140-90040

scan_protocol: Agilent scanner model G2505B, software G2565BA

data_processing: Data was analyzed by Fearure Extraction software (version 9.1, Agilent)

organism: Oryza sativa

source_name: jasmonic acid treated wild-type rice leaves for 1 h

label_protocol: Low RNA input Linear Amplification/Labeling Kit (Agilent)

growth_protocol: To grow rice plants, seeds of the wild type (cv. Nipponbare) and the osjar1-2 mutant were sterilized with 2.5% sodium hypochlorite solution for 30 min and then washed with sterilized water. Surface sterilized seeds were incubated on 0.7% agar gel containing 0.1% of the liquid fertilizer Hanakoujou (Sumika-Takeda Garden Products, Tokyo, Japan) for 1 week at 28°C in the light. Germinated seeds were then transplanted into a mixture of vermiculite and artificial compost, Bonsol (Sumitomo Chem., Tokyo, Japan), to grow in a greenhouse (12 h light at 28°C/12 h dark at 25°C). One and half month-old plants were used for the experiments.

extract_protocol: RNeasy Plant Mini Kit (Qiagen)

treatment_protocol: The leaf disks (6 mmϕ) were excised from the uppermost rice leaf blades of 1.5 month-old plants. Then the leaf disks were floated on 100 μM jasmonic acid for JA treatment. Sixteen leaf disks from 8 plants (2 leaf disks from each plants) were used for one sample.

tag: cultivar

value: Nipponbare

tag: genotype

value: wild-type

tag: agent

value: jasmonic acid

tag: time point

value: 1 h

source_name: jasmonic acid treated osjar1-2 mutant rice leaves for 1 h

value: osjar1-2 mutant


title: non-IBC#5 (DNA)

tag: tag


title: non-IBC#4 (DNA)


title: PCa, fresh-frozen, unique replicate 11SE309

description:
miRNA expression data from human prostate tissues.
11SE309
PCa, fresh-frozen, unique replicate


title: Comparison of the wild type with the osjar1-2 mutant 0.5 h after jasmonic acid treatment replicate 2

description: Biological replicate 2 of 3.

source_name: jasmonic acid treated wild-type rice leaves for 0.5 h

source_name: jasmonic acid treated osjar1-2 mutant rice leaves for 0.5 h


title: Comparison of the wild type with the osjar1-2 mutant 1 h after jasmonic acid treatment replicate 2

description: Biological replicate 2 of 3.


title: Normal prostate, fresh-frozen, unique replicate 11SE352

description:
miRNA expression data from human prostate tissues.
11SE352
Normal prostate, fresh-frozen, unique replicate


title: Comparison of the wild type with the osjar1-2 mutant 2 h after jasmonic acid treatment replicate 3

description: Biological replicate 3 of 3.

source_name: jasmonic acid treated wild-type rice leaves for 2 h

value: 2 h

source_name: jasmonic acid treated osjar1-2 mutant rice leaves for 2 h


title: Normal prostate, fresh-frozen, unique replicate 11SE342

description:
miRNA expression data from human prostate tissues.
11SE342
Normal prostate, fresh-frozen, unique replicate


title: Comparison of the wild type with the osjar1-2 mutant 0 h after jasmonic acid treatment replicate 3

description: Biological replicate 3 of 3.

source_name: jasmonic acid treated wild-type rice leaves for 0 h

value: 0 h

source_name: jasmonic acid treated osjar1-2 mutant rice leaves for 0 h


title: PCa, fresh-frozen, unique replicate 11SE308

description:
miRNA expression data from human prostate tissues.
11SE308
PCa, fresh-frozen, unique replicate


title: Comparison of the wild type with the osjar1-2 mutant 0 h after jasmonic acid treatment replicate 2

description: Biological replicate 2 of 3.


title: Comparison of the wild type with the osjar1-2 mutant 0.5 h after jasmonic acid treatment replicate 3

description: Biological replicate 3 of 3.


title: Normal prostate, fresh-frozen, unique replicate 11SE341

description:
miRNA expression data from human prostate tissues.
11SE341
Normal prostate, fresh-frozen, unique replicate


title: Comparison of the wild type with the osjar1-2 mutant 2 h after jasmonic acid treatment replicate 2

description: Biological replicate 2 of 3.


title: Comparison of the wild type with the osjar1-2 mutant 2 h after jasmonic acid treatment replicate 1

description: Biological replicate 1 of 3.


title: non-IBC#3 (DNA)

description: Data was merged high (_100) and low (_10) PMT data

value: non-IBC

source_name: Human Female Genomic DNA

value: Novagen Catalogue Number:70605


title: non-IBC#2 (DNA)


title: Comparison of the wild type with the osjar1-2 mutant 1 h after jasmonic acid treatment replicate 1

description: Biological replicate 1 of 3.


title: non-IBC#1 (DNA)


title: PCa, fresh-frozen, unique replicate 11SE304

description:
miRNA expression data from human prostate tissues.
11SE304
PCa, fresh-frozen, unique replicate


title: Comparison of the wild type with the osjar1-2 mutant 0.5 h after jasmonic acid treatment replicate 1

description: Biological replicate 1 of 3.


title: PCa, fresh-frozen, unique replicate 11SE301

description:
miRNA expression data from human prostate tissues.
11SE301
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE305

description:
miRNA expression data from human prostate tissues.
11SE305
PCa, fresh-frozen, unique replicate

value: Positive


title: PCa, fresh-frozen, unique replicate 11SE299

description:
miRNA expression data from human prostate tissues.
11SE299
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE298

description:
miRNA expression data from human prostate tissues.
11SE298
PCa, fresh-frozen, unique replicate

value: Negative


title: PCa, fresh-frozen, unique replicate 11SE303

description:
miRNA expression data from human prostate tissues.
11SE303
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE307

description:
miRNA expression data from human prostate tissues.
11SE307
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE300

description:
miRNA expression data from human prostate tissues.
11SE300
PCa, fresh-frozen, unique replicate


title: infected human aortic endothelial cell (HAEC)

city: Emeryville

first: Henry

middle: H

last: Chang

state: CA

address: 4560 Horton Street

department: Infectious Diseases Group

institute: Novartis Institutes for BioMedical Research

description:
inf HAEC
Biological replicate 1 of 1. All samples in Experiment 2 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.

hyb_protocol: Samples were hybridized to the custom tiling microarrays according the manufacturer’s protocol (Agilent). Hybridized microarrays were washed according to the manufacturer’s protocol (Agilent).

scan_protocol: Microarrays were scanned on the GenePix 4000B scanner (Axon instruments) and all feature intensities collected using the GenePix Pro 6.0 software.

data_processing: TIFF images of scanned slides were analyzed using Feature Extraction Software version 9.5.3 (Agilent) using a custom grid file (017577_D_F_20070822). LOWESS normalized, background subtracted data were obtained from log2 of processed Red signal/processed Green signal. Agilent software was used. Data of identical probes were averaged. Data were subjected to a further linear normalization step by the average of the features detecting the spike-in transcripts. Only features that did not have any feature non-uniformity or population outlier flags contributed to the averages used for determining the normalization factor. Removed any data that failed any of the following spot quality filters: 1. gIsFound = 1 AND rIsFound = 1; 2. no PopnOL or NonUnifOL detected; 3. g OR r IsWellAboveBackground. Data of every probe was centered to the average of the corresponding control samples. Data for host genes were removed and probes against viral sequences were ordered by position in genome.

organism:
Homo sapiens
Human herpesvirus 8 strain rKSHV.219

source_name: HAEC stably infected with rKSHV.219

label_protocol: The Quick Amp Labeling Kit (Agilent) was used according to the manufacturer’s protocol to generate Cy5/Cy3 labeled cRNA from 450 ng of total RNA, which contains mix of spike-in transcripts A + B (Agilent). An equal amount of the spike-in transcript mix were added to both Cy5 and Cy3 labeled samples. The spike-in transcripts were detected by E1A probes on the array and used for linear normalization subsequent to the LOWESS normalization performed by the Agilent feature extraction software.

growth_protocol: Microvascular LEC and BEC were cultured in EGM2-MV media (Lonza).  Macrovascular HUVEC and HAEC were cultured in EGM2 media (Lonza). Cells stably infected with rKSHV.219 were maintained in 0.25 ug/mL puromycin (Invivogen).

extract_protocol: All samples were harvested in RLT buffer and RNA was isolated using the RNeasy Mini Kit according to the manufacturer’s protocol (Qiagen).

value: Human herpesvirus 8 strain rKSHV.219 (infection:stable)

organism:
Homo sapiens
Human gammaherpesvirus 8

source_name: Common reference: mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219), both latent and lytic.

tag: common reference composition

value: cell type:mix of several different cell types (BJAB, BCBL, iSLK, iSLK.219); virus:HHV8 Type M (in BCBL) or HHV8 Type P (in iSLK.219); infection status:uninfected (BJAB and iSLK) or stably infected (latent & lytic BCBL and iSLK.219)


title: PCa, fresh-frozen, unique replicate 11SE302

description:
miRNA expression data from human prostate tissues.
11SE302
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE306

description:
miRNA expression data from human prostate tissues.
11SE306
PCa, fresh-frozen, unique replicate


title: Comparison of the wild type with the osjar1-2 mutant 0 h after jasmonic acid treatment replicate 1

description: Biological replicate 1 of 3.


title: PCa, fresh-frozen, unique replicate 11SE294

description:
miRNA expression data from human prostate tissues.
11SE294
PCa, fresh-frozen, unique replicate


title: mock human aortic endothelial cell (HAEC)

description:
mock HAEC
Biological replicate 1 of 1. All samples in Experiment 2 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.

source_name: mock infected HAEC

value: mock


title: 4 h after jasmonic acid treatment replicate 3

description: Biological replicate 3 of 3.

source_name: untreated wild-type rice leaves

growth_protocol: To grow rice plants, seeds of the wild type (cv. Nipponbare) were sterilized with 2.5% sodium hypochlorite solution for 30 min and then washed with sterilized water. Surface sterilized seeds were incubated on 0.7% agar gel containing 0.1% of the liquid fertilizer Hanakoujou (Sumika-Takeda Garden Products, Tokyo, Japan) for 1 week at 28°C in the light. Germinated seeds were then transplanted into a mixture of vermiculite and artificial compost, Bonsol (Sumitomo Chem., Tokyo, Japan), to grow in a greenhouse (12 h light at 28°C/12 h dark at 25°C). One and half month-old plants were used for the experiments.

source_name: wild-type rice leaves treated with jasmonic acid for 4 h

value: 4 h


title: PCa, fresh-frozen, unique replicate 11SE292

description:
miRNA expression data from human prostate tissues.
11SE292
PCa, fresh-frozen, unique replicate

source_name: PCa, fresh-frozen


title: PCa, fresh-frozen, unique replicate 11SE297

description:
miRNA expression data from human prostate tissues.
11SE297
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE293

description:
miRNA expression data from human prostate tissues.
11SE293
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE295

description:
miRNA expression data from human prostate tissues.
11SE295
PCa, fresh-frozen, unique replicate


title: 2 h after jasmonic acid treatment replicate 3

description: Biological replicate 3 of 3.

source_name: wild-type rice leaves treated with jasmonic acid for 2 h


title: infected human umbilical vein endothelial cell (HUVEC)

description:
inf HUVEC
Biological replicate 1 of 1. All samples in Experiment 2 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.

source_name: HUVEC stably infected with rKSHV.219


title: 0.5 h after jasmonic acid treatment replicate 3

description: Biological replicate 3 of 3.

source_name: wild-type rice leaves treated with jasmonic acid for 0.5 h


title: 1 h after jasmonic acid treatment replicate 3

description: Biological replicate 3 of 3.

source_name: wild-type rice leaves treated with jasmonic acid for 1 h


title: 4 h after jasmonic acid treatment replicate 2

description: Biological replicate 2 of 3.


title: PCa, fresh-frozen, unique replicate 11SE289

description:
miRNA expression data from human prostate tissues.
11SE289
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE291

description:
miRNA expression data from human prostate tissues.
11SE291
PCa, fresh-frozen, unique replicate


title: mock human umbilical vein endothelial cell (HUVEC)

description:
mock HUVEC
Biological replicate 1 of 1. All samples in Experiment 2 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.

source_name: mock infected HUVEC


title: PCa, fresh-frozen, unique replicate 11SE288

description:
miRNA expression data from human prostate tissues.
11SE288
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE287

description:
miRNA expression data from human prostate tissues.
11SE287
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE281

description:
miRNA expression data from human prostate tissues.
11SE281
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE284

description:
miRNA expression data from human prostate tissues.
11SE284
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE282

description:
miRNA expression data from human prostate tissues.
11SE282
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE286

description:
miRNA expression data from human prostate tissues.
11SE286
PCa, fresh-frozen, unique replicate


title: infected blood endothelial cell (BEC) replicate 2

description:
inf BEC replicate 2
Biological replicate 2 of 2. All samples in Experiment 2 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.

source_name: BEC stably infected with rKSHV.219


title: 2 h after jasmonic acid treatment replicate 2

description: Biological replicate 2 of 3.


title: 0.5 h after jasmonic acid treatment replicate 2

description: Biological replicate 2 of 3.


title: PCa, fresh-frozen, unique replicate 11SE283

description:
miRNA expression data from human prostate tissues.
11SE283
PCa, fresh-frozen, unique replicate


title: infected lymphatic endothelial cell (LEC) replicate 2

description:
inf LEC replicate 2
Biological replicate 2 of 2. All samples in Experiment 2 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.

source_name: LEC stably infected with rKSHV.219


title: mock lymphatic endothelial cell (LEC) replicate 2

description:
mock LEC replicate 2
Biological replicate 2 of 2. All samples in Experiment 2 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.

source_name: mock infected LEC


title: 1 h after jasmonic acid treatment replicate 2

description: Biological replicate 2 of 3.


title: mock blood endothelial cell (BEC) replicate 2

description:
mock BEC replicate 2
Biological replicate 2 of 2. All samples in Experiment 2 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.

source_name: mock infected BEC


title: PCa, fresh-frozen, unique replicate 11SE279

description:
miRNA expression data from human prostate tissues.
11SE279
PCa, fresh-frozen, unique replicate


title: infected blood endothelial cell (BEC) replicate 1

description:
inf BEC replicate 1
Biological replicate 1 of 2. All samples in Experiment 1 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.

growth_protocol: LEC and BEC were cultured in EGM2-MV media (Lonza) and cells stably infected with rKSHV.219 were maintained in 0.25 ug/mL puromycin (Invivogen).


title: PCa, fresh-frozen, unique replicate 11SE278

description:
miRNA expression data from human prostate tissues.
11SE278
PCa, fresh-frozen, unique replicate


title: PCa, fresh-frozen, unique replicate 11SE280

description:
miRNA expression data from human prostate tissues.
11SE280
PCa, fresh-frozen, unique replicate


title: 4 h after jasmonic acid treatment replicate 1

description: Biological replicate 1 of 3.


title: mock blood endothelial cell (BEC) replicate 1

description:
mock BEC replicate 1
Biological replicate 1 of 2. All samples in Experiment 1 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.


title: 2 h after jasmonic acid treatment replicate 1

description: Biological replicate 1 of 3.


title: 1 h after jasmonic acid treatment replicate 1

description: Biological replicate 1 of 3.


title: 0.5 h after jasmonic acid treatment replicate 1

description: Biological replicate 1 of 3.


title: mock lymphatic endothelial cell (LEC) replicate 1

description:
mock LEC replicate 1
Biological replicate 1 of 2. All samples in Experiment 1 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.


title: infected lymphatic endothelial cell (LEC) replicate 1

description:
inf LEC replicate 1
Biological replicate 1 of 2. All samples in Experiment 1 were processed in parallel, visualized on the same microarray on the same day, and the resulting microarray data was analyzed as one collective data set.


title: Cre:lox OS 0925T

status: Public on Mar 28 2013

city: Fitzroy

first: Carl

last: Walkley

state: Victoria

address: 9 Princes St

institute: St. Vincent's Institute of Medical Research

hyb_protocol: Performed by Ramaciotti Centre for Gene Function Analysis at the University of New South Wales, Sydney, Australia in accordance with the manufacturer’s instructions.

data_processing: Cre:Lox and shRNA OS samples were RMA normalised in GenePattern using NormalizeAffymetrixST (RMA, core probesets, controls included, MoGene_1_0_ST_v1.na32.mm9.transcript.chip).

source_name: primary tumor Cre:lox OS Tibia Rbfl/+ P53fl/fl

growth_protocol: Mouse model

extract_protocol: Primary OS samples were homogenized in Trizol reagent (Invitrogen, VIC, Australia) using an electric tissue homogenizer. Cells were lysed directly in Trizol reagent. All RNA was purified using RNeasy kit (Qiagen) and ~1-15ug of total RNA was submitted for expression profiling.

value: primary tumor

tag: tumour location

value: Tibia

tag: genotype rb

value: Rbfl/+

tag: genotype p53

tag: model

value: Cre:lox OS

tag: strain


title: Cre:lox OS 859Sc

scan_protocol: Performed by Ramaciotti Centre for Gene Function Analysis at the University of New South Wales, Sydney, Australia in accordance with the manufacturer’s instructions.

source_name: primary tumor Cre:lox OS Scapula Rb+/+ P53fl/fl

tag: tissue

value: Scapula


title: Cre:lox OS 1009T

label_protocol: Performed by Ramaciotti Centre for Gene Function Analysis at the University of New South Wales, Sydney, Australia in accordance with the manufacturer’s instructions.


title: shRNA OS 55T

source_name: primary tumor shRNA OS Tibia Rbfl/+ P53.1224

value: shRNA OS


title: Cre:lox OS 0910H

source_name: primary tumor Cre:lox OS Humerus Rbfl/+ P53fl/fl

value: Humerus


title: HDP, E2-treated

city: Chiyoda-ku

first: Tomoko

last: Kobayashi

state: Tokyo

institute: The Nippon Dental University

hyb_protocol: Following fragmentation, 5.5 ug of cDNA were labeled and hybridized for 16 hr at 45C on GeneChip® Human Gene 1.0 ST Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the GeneChip® Scanner 3000 7G.

data_processing: The data were analyzed with median polish summarization and quantile normalization by Affymetrix® Expression Console™ 1.1 software, and obtained normalized intensity values.

source_name: human dental pulp (HDP) cells, 17beta-estradiol treated

label_protocol: RNA amplification and labeling using Ambion® WT Expression Kit (Life Technologies, California, US) and GeneChip® WT Terminal Labeling and Controls Kit (Affymetrix, California , US)

growth_protocol: Cells were cultured with phenol-red free alpha-MEM medium supplemented with 5% stripped fetal bovine serum for 24h before experiments.

extract_protocol: Total RNA was extracted using RNeasy Mini Kit (QIAGEN, Hilden, Germany) according to manufacture’s instructions.

treatment_protocol: Human dental pulp cells were exposed to 10^-6 M 5alpha-dihydrotestosterone for 24h.

tag: gender

value: female

value: dental pulp

tag: treatment


title: shRNA OS 48T

source_name: primary tumor shRNA OS Tibia Rb+/+ P53.1224


title: shRNA OS 34T


title: HDP, non-treated (E2 control)

source_name: human dental pulp (HDP) cells, non-treated

value: control


title: HDP, non-treated (DHT control)

value: male


title: HDP, DHT-treated

source_name: human dental pulp (HDP) cells, 5alpha-dihydrotestosterone treated

value: DHT


title: NB_E_333

source_name: tumor sample

value: Neuroblastoma

tag: Sex

value: M

tag: mycn (1

value: not amplified; Amp:amplified; n.a.:not available):1

tag: Stage

tag: age (1

value: <18 months; 2:>18 months):2


title: NB_E_335

value: F

value: <18 months; 2:>18 months):1


title: shRNA OS 65H

source_name: primary tumor shRNA OS Humerus Rbfl/+ P53.1224

value: primary tumor


title: A. thaliana roots inoculated with Da-bac TI-8, Replicate 4

city: Cordoba

first: German

middle: Alexis

last: Gonzalez

state: Cordoba

address: Av. Armada Argentina 3555

department: School of Engineering

country: Argentina

institute: Catholic University of Cordoba

description: Biological replicate 4 of 4.

hyb_protocol: Before hybridization, the slides were pre-blocked with 5X SSC, 0.1% SDS and 0.1% BSA. Then, 60 picomoles of each fluorescent-labeled probe were mixed with 1X hybridization solution (5X SSC, 50% formamide, 0.1% SDS, and 0.01% salmon sperm DNA) and heated at 95°C for 2 minutes. After hybridization for 16 hours at 42 °C, the slides were washed once in 2X SSC and 0.1% SDS for 5 minutes at 42 °C, washed in 2X SSC and 0.1% SDS for 5 minutes at room temperature, and next washed twice with 0.1X SSC for 1 minute.

scan_protocol: Agilent Technologies Scanner G2505C US09493743 Images were quantified using Agilent Feature Extraction Software (version A.8.5.1.1).

data_processing: R-2.14 was used for background correction (norm exp with offset=50) and LOESS normalization.

organism: Arabidopsis thaliana

source_name: Inoculated roots with a bacterial strain Antarctic (Pseudomonas sp, Da-bac TI-8)

label_protocol: The aRNA were synthesized and labeled using the SuperScript Indirect RNA Amplification System and Alexa Fluor dyes (Invitrogen, Carlsbad, CA, USA). 1 µg of total RNA were primed with T7-oligo (dT) primer and reversed transcribed at 46°C for 2 h in the presence of 400 U SuperScript III RTase (Invitrogen), and dNTP mix 10 mM.  In vitro transcription were carried out with 1.5 µL ATP (100 mM), 1.5 µL CTP (100 mM), 1.5 µL GTP (100 mM), 0.75 µL UTP (100 mM), 2 µL aa-UTP (50 mM), 4 µL T7 Reaction Buffer 10X and 7 µL T7 Enzyme Mix at 37ºC for 14 h.

extract_protocol: Total RNA extracted using RNA Solv Reagent (Omega Bio-Tek) following manufacturer's instructions.

treatment_protocol: Seeds of Arabidopsis thaliana ecotype Columbia (Col-0) were surface sterilized with isopropanol and sodium hypochlorite 2.5%, then the seeds were inoculated by immersion with the Antarctic strain Da-bac TI-8 at a concentration of 104 CFU / mL and left as control uninoculated seeds. After the treated seeds were placed in petri dishes containing MS medium at 50% and left in a growth chamber with a temperature of 22 ° C and a photoperiod of 16 h light / 8 h dark for 20 days

tag: ecotype

value: roots

tag: age

value: day 20

source_name: untreated  roots (control)


title: irStress_95unrelated_GM12898_6hr

first: Renuka

last: Nayak

address: 3516 Civic Center Blvd

institute: HHMI, University of Pennsylvania

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12898 6 hours after exposure.

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16-18 hr at 45C on Affymetrix GeneChip Human U133A 2.0 Chip. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix print default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.

source_name: Lymphoblastoid cell lines derived from GM12898

label_protocol: Biotinylated cRNA was prepared using the MessageAmp II-Biotin Enhanced Single Round aRNA Amplification Kit (Ambion/Applied Biosystems) from 1 microg of total RNA following manufacturer's instructions.

growth_protocol: The cells were grown at a density of 500,000 cells/ ml in RPMI 1640 with 15% FBS, 1% penicillin-streptomycin, 2mM L-glutamine at 37°C in a humidified 5% CO2 chamber.

extract_protocol: RNA was extracted using the Rneasy Mini-Kit (Qiagen) as per the manufacturer's instructions

treatment_protocol: 10 Gy of ionizing radiation (IR) in a 137Cs irradiator.

tag: cell line

value: 10 Gy ionizing radiation

tag: time


title: NB_E_334


title: A. thaliana roots inoculated with Da-bac TI-8, Replicate 3

description: Biological replicate 3 of 4.


title: A. thaliana roots inoculated with Da-bac TI-8, Replicate 1

description: Biological replicate 1 of 4.


title: irStress_95unrelated_GM12892_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12892 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12892


title: irStress_95unrelated_GM12874_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12874 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12874


title: NB_E_330


title: NB_E_332


title: irStress_95unrelated_GM12877_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12877 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12877


title: irStress_95unrelated_GM12897_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12897 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12897


title: irStress_95unrelated_GM12911_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12911 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12911


title: irStress_95unrelated_GM12891_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12891 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12891


title: irStress_95unrelated_GM12912_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12912 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12912


title: NB_E_331


title: A. thaliana roots inoculated with Da-bac TI-8, Replicate 2

description: Biological replicate 2 of 4.

label: Aleza 555


title: NB_E_329


title: irStress_95unrelated_GM12831_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12831 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12831


title: NB_E_327


title: NB_E_328


title: irStress_95unrelated_GM12832_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12832 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12832


title: irStress_95unrelated_GM12873_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12873 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12873


title: irStress_95unrelated_GM12818_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12818 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12818


title: NB_E_322


title: irStress_95unrelated_GM12815_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12815 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12815


title: NB_E_325

source_name: tumor sample


title: irStress_95unrelated_GM12813_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12813 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12813


title: irStress_95unrelated_GM12817_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12817 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12817


title: NB_E_321


title: irStress_95unrelated_GM12872_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12872 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12872


title: NB_E_323


title: irStress_95unrelated_GM12766_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12766 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12766


title: NB_E_324


title: irStress_95unrelated_GM12814_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12814 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12814


title: irStress_95unrelated_GM12767_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12767 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12767


title: irStress_95unrelated_GM12812_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12812 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12812


title: NB_E_318


title: NB_E_319


title: NB_E_326

value: not amplified; Amp:amplified; n.a.:not available):n.a.


title: irStress_95unrelated_GM12762_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12762 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12762


title: NB_E_320


title: irStress_95unrelated_GM12760_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12760 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12760


title: irStress_95unrelated_GM12761_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12761 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12761


title: NB_E_316


title: NB_E_317


title: NB_E_315


title: irStress_95unrelated_GM12751_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12751 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12751


title: NB_E_311


title: NB_E_314


title: NB_E_312


title: irStress_95unrelated_GM12750_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12750 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12750


title: irStress_95unrelated_GM12717_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12717 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12717


title: irStress_95unrelated_GM12385_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12385 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12385


title: NB_E_308


title: NB_E_313


title: NB_E_309

value: not amplified; Amp:amplified; n.a.:not available):Amp


title: irStress_95unrelated_GM12386_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12386 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12386


title: irStress_95unrelated_GM12249_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12249 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12249


title: irStress_95unrelated_GM12763_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12763 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12763


title: irStress_95unrelated_GM12456_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12456 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12456


title: irStress_95unrelated_GM12471_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12471 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12471


title: NB_E_310

source_name: tumor sample


title: NB_E_307


title: NB_E_306


title: NB_E_305


title: irStress_95unrelated_GM12739_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12739 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12739


title: irStress_95unrelated_GM12248_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12248 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12248


title: NB_E_304


title: NB_E_303


title: irStress_95unrelated_GM12239_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12239 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12239


title: NB_E_302


title: NB_E_301


title: irStress_95unrelated_GM12470_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12470 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12470


title: irStress_95unrelated_GM12708_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12708 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12708


title: irStress_95unrelated_GM12236_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12236 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12236


title: irStress_95unrelated_GM12234_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12234 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12234


title: NB_E_300


title: irStress_95unrelated_GM12155_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12155 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12155


title: irStress_95unrelated_GM12156_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12156 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12156


title: NB_E_298


title: NB_E_299


title: NB_E_296


title: irStress_95unrelated_GM12154_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12154 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12154


title: NB_E_295


title: irStress_95unrelated_GM12145_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12145 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12145


title: irStress_95unrelated_GM12146_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12146 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12146


title: NB_E_297


title: NB_E_293


title: NB_E_292


title: irStress_95unrelated_GM12056_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12056 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12056


title: irStress_95unrelated_GM12144_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12144 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12144


title: NB_E_289


title: irStress_95unrelated_GM12006_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12006 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12006


title: NB_E_287


title: irStress_95unrelated_GM12004_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12004 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12004


title: irStress_95unrelated_GM11995_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11995 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11995


title: irStress_95unrelated_GM12003_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12003 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12003


title: NB_E_291

source_name: tumor sample


title: NB_E_294


title: NB_E_290


title: irStress_95unrelated_GM12005_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12005 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12005


title: irStress_95unrelated_GM12057_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12057 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12057


title: irStress_95unrelated_GM11993_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11993 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11993


title: NB_E_284


title: irStress_95unrelated_GM11992_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11992 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11992


title: irStress_95unrelated_GM11994_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11994 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11994


title: NB_E_281


title: NB_E_286


title: NB_E_278


title: irStress_95unrelated_GM11840_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11840 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11840


title: irStress_95unrelated_GM11832_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11832 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11832


title: irStress_95unrelated_GM11839_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11839 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11839


title: irStress_95unrelated_GM11831_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11831 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11831


title: irStress_95unrelated_GM11882_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11882 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11882


title: irStress_95unrelated_GM10853_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10853 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10853


title: NB_E_282


title: NB_E_285


title: irStress_95unrelated_GM11830_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11830 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11830


title: NB_E_280


title: NB_E_275


title: NB_E_283


title: irStress_95unrelated_GM10857_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10857 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10857


title: NB_E_277


title: NB_E_279


title: NB_E_276


title: irStress_95unrelated_GM10858_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10858 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10858


title: NB_E_274


title: irStress_95unrelated_GM10852_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10852 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10852


title: irStress_95unrelated_GM11829_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11829 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11829


title: NB_E_272

source_name: tumor sample


title: NB_E_288


title: NB_E_273


title: irStress_95unrelated_GM11881_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM11881 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM11881


title: irStress_95unrelated_GM10842_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10842 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10842


title: NB_E_264


title: NB_E_266


title: NB_E_267


title: NB_E_263


title: irStress_95unrelated_GM10845_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10845 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10845


title: NB_E_270


title: irStress_95unrelated_GM10850_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10850 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10850


title: NB_E_271


title: irStress_95unrelated_GM10848_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10848 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10848


title: irStress_95unrelated_GM10849_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10849 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10849


title: NB_E_268


title: irStress_95unrelated_GM10840_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10840 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10840


title: irStress_95unrelated_GM10836_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10836 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10836


title: NB_E_269


title: irStress_95unrelated_GM10843_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10843 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10843


title: irStress_95unrelated_GM10841_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10841 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10841


title: irStress_95unrelated_GM10834_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10834 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10834


title: irStress_95unrelated_GM10844_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10844 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10844


title: NB_E_260


title: irStress_95unrelated_GM10833_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10833 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10833


title: irStress_95unrelated_GM10837_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10837 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10837


title: NB_E_265


title: irStress_95unrelated_GM07357_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07357 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07357


title: NB_E_262


title: NB_E_257


title: NB_E_261


title: NB_E_258


title: NB_E_259


title: irStress_95unrelated_GM10832_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM10832 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM10832


title: NB_E_250

source_name: tumor sample


title: irStress_95unrelated_GM07049_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07049 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07049


title: irStress_95unrelated_GM07345_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07345 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07345


title: irStress_95unrelated_GM06994_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM06994 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM06994


title: irStress_95unrelated_GM07057_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07057 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07057


title: NB_E_256


title: NB_E_252


title: irStress_95unrelated_GM07034_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07034 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07034


title: irStress_95unrelated_GM07022_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07022 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07022


title: irStress_95unrelated_GM06993_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM06993 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM06993


title: irStress_95unrelated_GM07000_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07000 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07000


title: NB_E_249


title: NB_E_255


title: NB_E_254


title: NB_E_251


title: irStress_95unrelated_GM07056_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07056 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07056


title: NB_E_247


title: NB_E_244


title: NB_E_248


title: irStress_95unrelated_GM07055_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07055 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07055


title: NB_E_245


title: irStress_95unrelated_GM07002_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM07002 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM07002


title: NB_E_253


title: irStress_95unrelated_GM12912_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12912 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12912


title: irStress_95unrelated_GM06990_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM06990 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM06990


title: NB_E_246


title: irStress_95unrelated_GM12911_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12911 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12911


title: NB_E_243


title: irStress_95unrelated_GM06985_6hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM06985 6 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM06985


title: NB_E_242


title: NB_E_238


title: irStress_95unrelated_GM12877_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12877 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12877


title: irStress_95unrelated_GM12891_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12891 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12891


title: NB_E_241

source_name: tumor sample


title: irStress_95unrelated_GM12897_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12897 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12897


title: NB_E_235


title: irStress_95unrelated_GM12874_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12874 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12874


title: irStress_95unrelated_GM12872_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12872 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12872


title: NB_E_239


title: NB_E_232


title: NB_E_236


title: irStress_95unrelated_GM12892_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12892 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12892


title: NB_E_240


title: NB_E_233


title: NB_E_237


title: NB_E_234


title: irStress_95unrelated_GM12832_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12832 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12832


title: NB_E_230


title: irStress_95unrelated_GM12873_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12873 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12873


title: NB_E_231


title: irStress_95unrelated_GM12817_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12817 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12817


title: NB_E_228


title: irStress_95unrelated_GM12818_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12818 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12818


title: irStress_95unrelated_GM12831_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12831 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12831


title: irStress_95unrelated_GM12815_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12815 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12815


title: irStress_95unrelated_GM12898_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12898 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12898


title: irStress_95unrelated_GM12813_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12813 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12813


title: NB_E_229


title: NB_E_227


title: irStress_95unrelated_GM12814_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12814 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12814


title: irStress_95unrelated_GM12766_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12766 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12766


title: irStress_95unrelated_GM12761_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12761 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12761


title: irStress_95unrelated_GM12762_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12762 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12762


title: irStress_95unrelated_GM12763_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12763 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12763


title: NB_E_221

source_name: tumor sample


title: NB_E_224


title: irStress_95unrelated_GM12760_2hr

description: Gene expression data from lymphoblastoid cells following 10 Gy irradiation in a 137Cs irradiator from GM12760 2 hours after exposure.

source_name: Lymphoblastoid cell lines derived from GM12760


title: NB_E_219


title: NB_E_225


title: NB_E_223