title: brain, frontal cortex: Sample53_e1_le1

description:
Phenytoin frontal cortex 4
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, frontal cortex: Sample50_e1_le1

status: Public on Jul 06 2005

type: RNA

city: Phoenix

first: Winnie

last: Liang

state: AZ

address: 445 N. Fifth Street

country: USA

institute: Translational Genomics

description:
Phenytoin frontal cortex 1
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.

molecule: total RNA

organism: Rattus norvegicus

source_name: brain, frontal cortex


title: brain, frontal cortex: Sample43_e1_le1

description:
Levitiracetam frontal cortex 1
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: CH3_e1_le1

description:
Control hippocampus 3
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.

source_name: brain, hippocampus


title: brain, hippocampus: CH2_e1_le1

description:
Control hippocampus 2
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, frontal cortex: Sample51_e1_le1

description:
Phenytoin frontal cortex 2
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: CH7_e1_le1

description:
Control hippocampus 7
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: CH6_e1_le1

description:
Control hippocampus 6
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: B69-T

status: Public on Jul 28 2005

city: New York

first: Agnes

last: Viale

state: NY

address: 1275 York Avenue

department: Molecular Biology

institute: Memorial Sloan Kettering Cancer Center

description: RNA was extracted using a Quiagen RNeasy kit from homogenized frozen tumors

hyb_protocol: Standard Affymetrix protocol

scan_protocol: Standard Affymetrix protocol

data_processing: MAS 5.0

label: biotin

organism: Homo sapiens

source_name: Primary Breast Cancer

label_protocol: Standard Affymetrix protocol

extract_protocol: RNA was extracted using a Qiagen RNeasy kit from homogenized frozen tumors

tag: name

tag: age at dx

tag: tumor size (cm)

tag: pos lymph nodes

tag: all lymph nodes

tag: path er status

value: N

tag: path pr status

tag: her2 status

tag: van't veer signature

value: Bad Prognosis

tag: binary 5y met event

tag: met event

tag: mfs (yr)

tag: lm event

tag: lmfs (yr)

tag: bm event

tag: bmfs (yr)


title: brain, frontal cortex: Sample62_e1_le1

description:
Control frontal cortex 7
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, frontal cortex: Sample55_e1_le1

description:
Phenytoin frontal cortex 6
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, frontal cortex: Sample61_e1_le1

description:
Control frontal cortex 6
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: CH5_e1_le1

description:
Control hippocampus 5
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, brainstem: CB4_e1_le1

description:
Control brainstem 4
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.

source_name: brain, brainstem


title: brain, brainstem: CB5_e1_le1

description:
Control brainstem 5
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: CH1_e1_le1

description:
Control hippocampus 1
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: LH7_e1_le1

description:
Levitiracetam hippocampus 7
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: CB7_e1_le1

description:
Control brainstem 7
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, brainstem: CB6_e1_le1

description:
Control brainstem 6
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, brainstem: CB1_e1_le1

description:
Control brainstem 1
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, brainstem: LB1_e1_le1

description:
Levitiracetam brainstem 1
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: LH3_e1_le1

description:
Levitiracetam hippocampus 3
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: LH4_e1_le1

description:
Levitiracetam hippocampus 4
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: LH5_e1_le1

description:
Levitiracetam hippocampus 5
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: CB3_e1_le1

description:
Control brainstem 3
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: LH6_e1_le1

description:
Levitiracetam hippocampus 6
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: LB5_e1_le1

description:
Levitiracetam brainstem 5
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: LB2_e1_le1

description:
Levitiracetam brainstem 2
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: CB2_e1_le1

description:
Control brainstem 2
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, brainstem: LB3_e1_le1

description:
Levitiracetam brainstem 3
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: LH2_e1_le1

description:
Levitiracetam hippocampus 2
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: LB4_e1_le1

description:
Levitiracetam brainstem 4
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: CH4_e1_le1

description:
Control hippocampus 4
Treatment, type=compound_based_treatment, description=Male Wistar rats receive control solution (N=7 in each group) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: LH1_e1_le1

description:
Levitiracetam hippocampus 1
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: LB7_e1_le1

description:
Levitiracetam brainstem 7
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: PH5_e1_le1

description:
Phenytoin hippocampus 5
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: PH2_e1_le1

description:
Phenytoin hippocampus 2
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: PH6_e1_le1

description:
Phenytoin hippocampus 6
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: PH7_e1_le1

description:
Phenytoin hippocampus 7
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: PH3_e1_le1

description:
Phenytoin hippocampus 3
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, hippocampus: PH1_e1_le1

description:
Phenytoin hippocampus 1
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: PB6_e1_le1

description:
Phenytoin brainstem 6
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: PB7_e1_le1

description:
Phenytoin brainstem 7
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: PB5_e1_le1

description:
Phenytoin brainstem 5
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: LB6_e1_le1

description:
Levitiracetam brainstem 6
Treatment, type=compound_based_treatment, description=Male Wistar rats receive levetiracetam (150 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: PB2_e1_le1

description:
Phenytoin brainstem 2
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: PB3_e1_le1

description:
Phenytoin brainstem 3
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: PB1_e1_le1

description:
Phenytoin brainstem 1
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, brainstem: PB4_e1_le1

description:
Phenytoin brainstem 4
Treatment, type=compound_based_treatment, description=Male Wistar rats receive phenytoin (75 mg/kg x 2) through a gastric tube twice daily for 90 days.


title: brain, amygdala: Control-Hippocampus_e1_le2

description:
Hippocampus
Treatment, type=pharmacogenomic_treatment, description=Handled (no stress) control

source_name: brain, amygdala


title: brain, amygdala: Stress-Hippocampus_e1_le2

description:
Hippocampus
Treatment, type=pharmacogenomic_treatment, description=Chronic Immobilization Stress


title: brain, amygdala: Control-Amygdala_e1_le2

description:
Amygdala
Treatment, type=pharmacogenomic_treatment, description=Handled (no stress) control


title: brain, amygdala: Stress-Amygdala_e1_le2

description:
Amygdala
Treatment, type=pharmacogenomic_treatment, description=Chronic Immobilization Stress


title: brain, amygdala: Control-Cortex_e1_le3

description:
Cortex
Treatment, type=pharmacogenomic_treatment, description=Handled (no stress) control


title: brain, cerebellum: 3 hrs B GW_e1_le1

description:
Sample 10
Treatment, type=pharmacogenomic_treatment, description=Neuronal cultures from cultures of rat cerebellar granule neurons  will be treated with the chemical compound GW5074.

source_name: brain, cerebellum


title: brain, amygdala: Stress-Cortex_e1_le2

description:
Cortex
Treatment, type=pharmacogenomic_treatment, description=Chronic Immobilization Stress


title: brain, amygdala: Stress-Cortex_e1_le3


title: brain, amygdala: Stress-Cortex_e1_le1


title: brain, amygdala: Control-Cortex_e1_le2


title: brain, cerebellum: 3 hrs A LK_e1_le1

description:
Sample 7
Treatment, type=add, description=low potassium


title: brain, cerebellum: 6 hrs A LK_e1_le1

description:
Sample 1
Treatment, type=add, description=low potassium


title: brain, amygdala: Control-Hippocampus_e1_le1


title: brain, amygdala: Control-Hippocampus_e1_le3


title: brain, amygdala: Control-Cortex_e1_le1


title: brain, cerebellum: 3 hrs C GW_e1_le1

description:
Sample 12
Treatment, type=pharmacogenomic_treatment, description=Neuronal cultures from cultures of rat cerebellar granule neurons  will be treated with the chemical compound GW5074.


title: brain, cerebellum: 6hrs C GW_e1_le1

description:
Sample 6
Treatment, type=pharmacogenomic_treatment, description=Neuronal cultures from cultures of rat cerebellar granule neurons  will be treated with the chemical compound GW5074.


title: brain, cerebellum: 6 hrs A GW_e3_le1

description:
Sample 2
Treatment, type=pharmacogenomic_treatment, description=Neuronal cultures from cultures of rat cerebellar granule neurons  will be treated with the chemical compound GW5074.


title: brain, cerebellum: 3 hrs C LK_e1_le1

description:
Sample 11
Treatment, type=add, description=low potassium


title: brain, amygdala: Stress-Hippocampus_e1_le1


title: brain, amygdala: Control-Amygdala_e1_le3


title: brain, amygdala: Stress-Hippocampus_e1_le3


title: brain, cerebellum: 3 hrs B LK_e1_le1

description:
Sample 9
Treatment, type=add, description=low potassium


title: brain, amygdala: Stress-Amygdala_e1_le3


title: brain, amygdala: Control-Amygdala_e1_le1


title: brain, amygdala: Stress-Amygdala_e1_le1


title: brain, cerebellum: 6 hrs C LK_e1_le1

description:
Sample 5
Treatment, type=add, description=low potassium


title: brain, cerebellum: 6 hrs B GW_e1_le1

description:
Sample 4
Treatment, type=pharmacogenomic_treatment, description=Neuronal cultures from cultures of rat cerebellar granule neurons  will be treated with the chemical compound GW5074.


title: brain, cerebellum: 6hrs B LK_e1_le1

description:
Sample 3
Treatment, type=add, description=low potassium


title: eye, retina: Pineal at ZT 6_e1_le1

description:
Zeitgeber Time
Treatment, type=time_course, measurement=6.0 h

source_name: eye, retina


title: eye, retina: 2 Retina at CT 12_e1_le1

description:
Circadian Time
Treatment, type=time_course, measurement=12.0 h


title: eye, retina: Pineal at CT 6_e1_le1

description:
Circadian Time
Treatment, type=time_course, measurement=6.0 h


title: brain, retina: 3 Retina at ZT 6_e1_le1

source_name: brain, retina


title: brain, contralateral  Cortex: Trizol Extraction46_le1

description:
Sample46, Post Injury 24 hours
Treatment, type=wait

source_name: brain, contralateral  Cortex


title: brain, retina: 3 Retina at CT 6_e1_le1


title: eye, retina: Pineal at CT 12_e1_le1


title: brain, contralateral  Cortex: Trizol Extraction48_le1

description:
Sample48, Post Injury 24 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction47_le1

description:
Sample47, Post Injury 24 hours
Treatment, type=wait


title: eye, retina: 2 Retina at ZT 6_e1_le1


title: eye, retina: 1 Retina at CT  12_e1_le1


title: brain, retina: Pineal at ZT 12_e1_le1


title: eye, retina: 1 Retina at ZT 12_e1_le1

description:
Zeitgeber Time
Treatment, type=time_course, measurement=12.0 h


title: brain, retina: 3 Retina at CT 12_e1_le1


title: eye, retina: 1 Retina at CT 6_e1_le1


title: eye, retina: 2 Retina at CT 6_e1_le1


title: eye, retina: 2 Retina at ZT 12_e1_le1


title: brain, contralateral  Cortex: Trizol Extraction45_le1

description:
Sample45, Post Injury 24 hours
Treatment, type=wait


title: pineal gland, adrenal medulla: sample #1_e1_le1

description:
rat
Treatment, type=time_course, measurement=0.1 h

source_name: pineal gland, adrenal medulla


title: brain, cerebellum: 3 hrs A GW_e1_le1

description:
Sample 8
Treatment, type=pharmacogenomic_treatment, description=Neuronal cultures from cultures of rat cerebellar granule neurons  will be treated with the chemical compound GW5074.


title: pineal gland, adrenal medulla: sample #3_e1_le1

description:
rat
Treatment, type=time_course, measurement=1.0 h


title: brain, adrenal medulla: room temp -IMO_e1_le1

description:
adrenal medulla  2 hr imo
Treatment, type=pharmacogenomic_treatment, description=2 hr IMO stress at room temp

source_name: brain, adrenal medulla


title: brain, ipsi Cortex: Trizol Extraction39_le1

description:
Sample39, Post Injury 24 hours
Treatment, type=wait

source_name: brain, ipsi Cortex


title: brain, ipsi Cortex: Trizol Extraction38_le1

description:
Sample38, Post Injury 24 hours
Treatment, type=wait


title: brain, adrenal medulla: 28 day cold stress _e1_le1

description:
adrenal medualla 28 day cold
Treatment, type=pharmacogenomic_treatment, description=28 day cold stress, no immobilization


title: brain, contralateral  Cortex: Trizol Extraction42_le1

description:
Sample42, Post Injury 24 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction43_le1

description:
Sample43, Post Injury 24 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction35_le1

description:
Sample35, Post Injury 24 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction40_le1

description:
Sample40, Post Injury 24 hours
Treatment, type=wait


title: brain, adrenal medulla: 1 day cold_e1_le1

description:
Adreanl medulla 1 day cold stress
Treatment, type=pharmacogenomic_treatment, description=1 day cold stress


title: brain, retina: 3 Retina at ZT 12_e1_le1


title: brain, adrenal medulla: 7 day cold_e1_le1

description:
adrenal medulla 7 day cold
Treatment, type=pharmacogenomic_treatment, description=7 day cold stress


title: brain, contralateral  HC: Trizol Extraction30_le1

description:
Sample30, Post Injury 4 hours
Treatment, type=wait

source_name: brain, contralateral  HC


title: pineal gland, adrenal medulla: sample #2_e1_le1

description:
rat
Treatment, type=time_course, measurement=0.0 h


title: brain, ipsi Cortex: Trizol Extraction37_le1

description:
Sample37, Post Injury 24 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction34_le1

description:
Sample34, Post Injury 24 hours
Treatment, type=wait


title: brain, contralateral  HC: Trizol Extraction31_le1

description:
Sample31, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction44_le1

description:
Sample44, Post Injury 24 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction33_le1

description:
Sample33, Post Injury 24 hours
Treatment, type=wait


title: brain, contralateral  HC: Trizol Extraction28_le1

description:
Sample28, Post Injury 4 hours
Treatment, type=wait


title: eye, retina: 1 Retina at ZT 6_e1_le1

description:
Zeitgeber Time
Treatment, type=timepoint, description=Zeitgeber Time, measurement=6.0 h


title: brain, adrenal medulla: 28 day cold plus IMO_e1_le1

description:
adrenal medulla 28 day cold plus 2 hr IMO
Treatment, type=pharmacogenomic_treatment, description=cold stressed rats for 28 days exposed to 2 hr IMO


title: brain, ipsi HC: Trizol Extraction17_le1

description:
Sample17, Post Injury 4 hours
Treatment, type=wait

source_name: brain, ipsi HC


title: brain, contralateral  HC: Trizol Extraction26_le1

description:
Sample26, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  HC: Trizol Extraction25_le1

description:
Sample25, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  HC: Trizol Extraction29_le1

description:
Sample29, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi HC: Trizol Extraction21_le1

description:
Sample21, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction6_le1

description:
Sample6, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction5_le1

description:
Sample5, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction16_le1

description:
Sample16, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi HC: Trizol Extraction22_le1

description:
Sample22, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction7_le1

description:
Sample7, Post Injury 4 hours
Treatment, type=wait


title: brain, adrenal medulla: room temp - no stress _e1_le1

description:
adrenal medulla
Treatment, type=pharmacogenomic_treatment, description=No stress control


title: brain, contralateral  HC: Trizol Extraction23_le1

description:
Sample23, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi HC: Trizol Extraction20_le1

description:
Sample20, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction36_le1

description:
Sample36, Post Injury 24 hours
Treatment, type=wait


title: brain, ipsi HC: Trizol Extraction24_le1

description:
Sample24, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  HC: Trizol Extraction27_le1

description:
Sample27, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi HC: Trizol Extraction18_le1

description:
Sample18, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction4_le1

description:
Sample4, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction8_le1

description:
Sample8, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction12_le1

description:
Sample12, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  HC: Trizol Extraction32_le1

description:
Sample32, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction3_le1

description:
Sample3, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi HC: Trizol Extraction19_le1

description:
Sample19, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction15_le1

description:
Sample15, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction9_le1

description:
Sample9, Post Injury 4 hours
Treatment, type=wait


title: brain, ipsi Cortex: Trizol Extraction1_le1

description:
Sample1, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction11_le1

description:
Sample11, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction10_le1

description:
Sample10, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction41_le1

description:
Sample41, Post Injury 24 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction14_le1

description:
Sample14, Post Injury 4 hours
Treatment, type=wait


title: brain, contralateral  Cortex: Trizol Extraction13_le1

description:
Sample13, Post Injury 4 hours
Treatment, type=wait


title: brain, cortex: 14dexp2_e1_le1

description:
rat cortex
Treatment, type=time_course, measurement=14.0 d

source_name: brain, cortex


title: brain, cortex: 7dexp4_e1_le1

description:
rat cortex
Treatment, type=time_course, measurement=7.0 d


title: brain, cortex: 14dsham1_e1_le1


title: brain, cortex: 28dexp1_e1_le1

description:
rat cortex
Treatment, type=time_course, measurement=28.0 d


title: brain, cortex: 28dsham3_e1_le1


title: brain, cortex: 28dexp3_e1_le1


title: brain, cortex: 7dsham3_e1_le1


title: brain, cortex: 3dsham2_e1_le1

description:
rat cortex
Treatment, type=time_course, measurement=3.0 d


title: brain, cortex: 7dexp1_e1_le1


title: brain, cortex: 28dexp2_e1_le1


title: brain, cortex: 28dsham2_e1_le1


title: brain, cortex: 14dexp3_e1_le1


title: brain, cortex: 14dsham4_e1_le1


title: brain, cortex: 7dsham1_e1_le1


title: brain, cortex: 3dexp3_e1_le1


title: brain, cortex: 3dexp4_e1_le1


title: brain, cortex: norm1_e1_le1

description:
rat cortex
Treatment, type=time_course, measurement=0.1 d


title: brain, cortex: 7dexp2_e1_le1


title: brain, cortex: 7dsham4_e1_le1


title: brain, cortex: 3dexp1_e1_le1


title: brain, cortex: 14dexp4_e1_le1


title: brain, cortex: norm3_e1_le1


title: brain, cortex: 3dexp2_e1_le1


title: brain, cortex: norm2_e1_le2


title: brain, cortex: norm4_e1_le1


title: brain, cortex: norm2_e1_le1


title: brain, cortex: 7dsham2_e1_le1


title: brain, cortex: 14dexp1_e1_le1


title: brain, cortex: 28dsham4_e1_le1


title: brain, cortex: 3dsham3_e1_le1


title: brain, cortex: norm1_e1_le2


title: brain, cortex: 3dsham1_e1_le1


title: brain, cortex: 14dsham3_e1_le1


title: brain, cortex: 3dsham4_e1_le1


title: brain, cortex: 28dsham1_e1_le1


title: brain, cortex: 7dexp3_e1_le1


title: brain, cortex: norm4_e1_le2


title: brain, cortex: 28dexp4_e1_le1


title: brain, cerebellum: WCb12w#2_e1_le1

description:
wild-type mouse cerebellum
Treatment, type=time_course, measurement=11.0 weeks

organism: Mus musculus


title: brain, cortex: norm3_e1_le2


title: brain, hippocampus: Wt #3406 Hippo_e1_le1

description: Hippocampus


title: brain, cerebellum: WCx12w#1_e1_le1

description:
wild-type mouse forebrain
Treatment, type=time_course, measurement=11.0 weeks


title: brain, hippocampus: Wt #3406 Cereb_e1_le1

description: Cerebellum


title: brain, cortex: 14dsham2_e1_le1


title: brain, hippocampus: Wt #3396 Cort_e1_le1

description: Cortex


title: brain, hippocampus: Wt #3396 Cereb_e1_le1

description: Cerebellum


title: brain, cerebellum: KCx12w#2_e1_le1

description:
knockin mouse forebrain
Treatment, type=time_course, measurement=11.0 weeks


title: brain, cerebellum: WCx12w#2_e1_le1


title: brain, cerebellum: WCb12w#1_e1_le1


title: brain, hippocampus: Wt #3405 Hippo_e1_le1

description: Hippocampus


title: brain, cerebellum: KCb12w#2_e1_le1

description:
knockin mouse cerebellum
Treatment, type=time_course, measurement=11.0 weeks


title: brain, hippocampus: Wt #3405 Cort_e1_le1

description: Cortex


title: brain, hippocampus: Wt #3406 Cort_e1_le1

description: Cortex


title: brain, forebrain: WCx4w#3_e1_le1

description:
wild-type mouse forebrain
Treatment, type=time_course, measurement=4.0 weeks

source_name: brain, forebrain


title: brain, hippocampus: Wt #3396 Hippo_e1_le1

description: Hippocampus


title: brain, hippocampus: Wt #3405 Cereb_e1_le1

description: Cerebellum


title: brain, cerebellum: KCb12w#1_e1_le1

description:
knock-in mouse cerebellum
Treatment, type=time_course, measurement=11.0 weeks


title: brain, hippocampus: Aldh5a1-/- #3403 Cereb_e1_le1

description: Cerebellum


title: brain, hippocampus: Aldh5a1-/- #3389 Cort_e1_le1

description: Cortex


title: brain, cerebellum: KCx4w#1_e1_le1

description:
knockin mouse forebrain
Treatment, type=time_course, measurement=4.0 weeks


title: brain, hippocampus: Aldh5a1-/- #3389 Hippo_e1_le1

description: Hippocampus


title: brain, cerebellum: KCb4w#3_e1_le1

description:
knockin mouse cerebellum
Treatment, type=time_course, measurement=4.0 weeks


title: brain, cerebellum: KCx4w#2_e1_le1


title: brain, hippocampus: Aldh5a1-/- #3363 Cort_e1_le1

description: Cortex


title: brain, cerebellum: KCx12w#1_e1_le1


title: brain, hippocampus: Aldh5a1-/- #3363 Cereb_e1_le1

description: Cerebellum


title: brain, hippocampus: Aldh5a1-/- #3403 Cort_e1_le1

description: Cortex


title: brain, forebrain: WCx4w#1_e1_le1


title: brain, cerebellum: KCb4w#2_e1_le1


title: brain, hippocampus: Aldh5a1-/- #3363 Hippo_e1_le1

description: Hippocampus


title: brain, forebrain: WCx4w#2_e1_le1


title: brain, cerebellum: KCb4w#1_e1_le1


title: brain, cerebellum: WCb4w#1_e1_le1

description:
wild-type mouse cerebellum
Treatment, type=time_course, measurement=4.0 weeks


title: brain, hippocampus: Aldh5a1-/- #3389 Cereb_e1_le1

description: Cerebellum


title: brain, cerebellum: WCb4w#2_e1_le1


title: brain, cerebellum: WCb4w#3_e1_le1


title: brain, cerebellum: KCx4w#3_e1_le1


title: brain, hippocampus: Aldh5a1-/- #3403 Hippo_e1_le1

description: Hippocampus


title: PF48 EnPnT2N0G3

status: Public on Jun 01 2005

city: Bordeaux

first: Richard

last: Iggo

address: 229 cours de l'Argonne

department: Bergonie Cancer Institute

country: France

institute: University of Bordeaux

description: EORTC 10994

source_name: Biopsy


title: PF24 EnPnTiN0G3

description: EORTC 10994


title: PF47 EpPpT3N1G3

description: EORTC 10994


title: PF28 EnPnT2N1G3

description: EORTC 10994


title: PF46 EnPnT4N1G3

description: EORTC 10994


title: PF30 EpPpT2N0G3

description: EORTC 10994


title: PF36 EnPnT2N0G2

description: EORTC 10994


title: PF42 EnPnT2N2G3

description: EORTC 10994


title: PF49 EpPpT2N1G1

description: EORTC 10994


title: PF37 EpPpT3N1G2

description: EORTC 10994


title: PF43 EpPpT2N1G2

description: EORTC 10994


title: PF39 EnPuT4N0Gu

description: EORTC 10994


title: PF40 EpPnT4N0G2

description: EORTC 10994


title: PF34 EnPnT3N1G3

description: EORTC 10994


title: PF38 EnPnT2N1G3

description: EORTC 10994


title: PF32 EpPnT3N1G2

description: EORTC 10994 This sample was originally labelled EnPnT3N1G2, based on the clinical ER status on a formalin sample in the originating hospital. The ER status was revised to Ep after IHC of the frozen sample used for the array.


title: PF44 EnPnT3N0G3

description: EORTC 10994


title: PF50 EpPnT3N1G3

description: EORTC 10994


title: PF31 EnPnT2N0G3

description: EORTC 10994


title: PF45 EpPpT4N0G2

description: EORTC 10994


title: PF33 EpPnTiN0G2

description: EORTC 10994


title: PF27 EpPnT4N1G2

description: EORTC 10994


title: PF25 EnPnT3N2G2

description: EORTC 10994


title: PF19 EnPuT4N0Gu

description: EORTC 10994


title: PF26 EpPnT3N0G3

description:
EORTC 10994
This sample was originally labelled EnPnT3N0G3, based on the clinical ER status on a formalin sample in the originating hospital. The ER status was revised to Ep after IHC of the frozen sample used for the array.


title: PF20 EnPnT3N1G2

description: EORTC 10994


title: PF21 EpPpT2N1G2

description: EORTC 10994


title: PF29 EnPnT3N1G3

description: EORTC 10994


title: PF41 EnPnT3N1G2

description: EORTC 10994


title: PF23 EnPnT2N0G2

description: EORTC 10994


title: PF13 EpPpT2N1G1

description: EORTC 10994


title: PF16 EnPnT2N0G3

description: EORTC 10994


title: PF18 EnPnT2N1G3

description: EORTC 10994


title: PF12 EpPpTiN0G2

description: EORTC 10994


title: PF03 EpPpT3N0Gu

description: EORTC 10994


title: PF06 EnPnT2N0G3

description: EORTC 10994


title: PF15 EpPnTiN1G3

description: EORTC 10994


title: PF09 EpPpT3N1G2

description: EORTC 10994


title: PF02 EpPpT4N1G2

description: EORTC 10994


title: PF10 EpPpT4N1G2

description: EORTC 10994


title: PF14 EnPnT2N1G2

description: EORTC 10994


title: PF11 EpPpT3N1G2

description: EORTC 10994


title: PF07 EpPpT2N0G2

description: EORTC 10994


title: PF04 EpPpT2N1G1

description: EORTC 10994


title: PF17 EpPnT2N1G3

description: EORTC 10994


title: Wang4574_JA267

status: Public on Feb 23 2005

city: San Diego

first: Tim

last: Jatkoe

state: CA

institute: Veridex

description: RNA was extracted from a fresh-frozen primary breast tumor. Target cRNA was prepared and hybridized using standard Affymetrix procedures.  Image was globally scaled to a target intensity of 600.

source_name: Breast

tag: bone relapses (1=yes, 0=no)


title: Wang4563_JA255


title: PF01 EpPpT2N0G2

description: EORTC 10994 clinical trial


title: Wang4577_JA272


title: Wang4564_JA258


title: Wang4575_JA270


title: Wang4576_JA271


title: Wang4566_JA262


title: Wang4578_JA273


title: Wang4912_JA_894


title: Wang4562_JA254


title: Wang4561_JA253


title: Wang4565_JA259


title: Wang4620_JA772@R


title: Wang4913_JA_899


title: Wang4810_JA_268


title: Wang4560_JA252


title: Wang4910_JA_890


title: Wang4571_JA263


title: Wang4895_JA_853@2


title: Wang4909_JA_887


title: Wang4599_JA416


title: Wang4908_JA_883


title: Wang4579_JA275


title: Wang4809_JA_260


title: Wang4559_JA250


title: Wang4911_JA_891


title: Wang4811_JA_276


title: Wang4573_JA265


title: Wang4900_JA_862@2


title: Wang4808_JA_249


title: Wang4907_JA_879


title: Wang4551_JA237


title: Wang4008_JA-92


title: Wang4608_JA871


title: Wang4607_JA870


title: Wang4866_JA_794


title: Wang4010_JA-94


title: Wang4013_JA-99


title: Wang4609_JA873


title: Wang4557_JA246


title: Wang4552_JA239


title: Wang4611_JA877


title: Wang4012_JA-98


title: Wang4865_JA_793


title: Wang4867_JA_795


title: Wang4554_JA241


title: Wang4556_JA244


title: Wang4011_JA-96


title: Wang4006_JA-90


title: Wang4610_JA874


title: Wang4868_JA_796


title: Wang4009_JA-93


title: Wang4807_JA_236


title: Wang4862_JA_779@2


title: Wang4899_JA_861@2


title: Wang4553_JA240


title: Wang4806_JA_234


title: Wang4550_JA235


title: Wang4629_JA797


title: Wang4007_JA-91


title: Wang4549_JA231


title: Wang4805_JA_233


title: Wang4906_JA_876


title: Wang4548_JA230


title: Wang4627_JA789


title: Wang4056_JA-82


title: Wang4060_JA-89


title: Wang4569_JA226


title: Wang4055_JA-81


title: Wang4606_JA868


title: Wang4057_JA-84


title: Wang4904_JA_867


title: Wang4894_JA_852@2


title: Wang4568_JA222


title: Wang4626_JA785


title: Wang4547_JA223


title: Wang4605_JA866


title: Wang4623_JA780


title: Wang4625_JA783


title: Wang4903_JA_865


title: Wang4053_JA-79


title: Wang4856_JA_762@2


title: Wang4902_JA_864


title: Wang4054_JA-80


title: Wang4043_JA-141


title: Wang4624_JA782


title: Wang4863_JA_787@2


title: Wang4901_JA_863


title: Wang4052_JA-78


title: Wang692_JA-71


title: Wang4050_JA-74


title: Wang693_JA-71


title: Wang4861_JA_778@2


title: Wang4602_JA698


title: Wang4545_JA215


title: Wang4042_JA-140


title: Wang686_JA-64


title: Wang4040_JA-138


title: Wang4621_JA774


title: Wang4041_JA-139


title: Wang4546_JA217


title: Wang4034_JA-130


title: Wang4037_JA-135


title: Wang4038_JA-136


title: Wang687_JA-65


title: Wang4567_JA216


title: Wang4544_JA213


title: Wang690_JA-68


title: Wang4036_JA-134


title: Wang691_JA-70


title: Wang4893_JA_851@2


title: Wang685_JA-63


title: Wang688_JA-66


title: Wang4051_JA-75


title: Wang4622_JA777


title: Wang683_JA-61


title: Wang4035_JA-133


title: Wang4031_JA-124


title: Wang4030_JA-122


title: Wang4886_JA_843


title: Wang684_JA-62


title: Wang4045_JA-201


title: Wang4885_JA_841


title: Wang4838_JA_696


title: Wang4048_JA-205


title: Wang4618_JA763


title: Wang4046_JA-203


title: Wang4028_JA-118


title: Wang4033_JA-126


title: Wang4860_JA_769@2


title: Wang4918_JA_913


title: Wang4887_JA_844


title: Wang4044_JA-200


title: Wang4047_JA-204


title: Wang681_JA-56


title: Wang4883_JA_839


title: Wang679_JA-54


title: Wang680_JA-55


title: Wang4879_JA_833


title: Wang4022_JA-110


title: Wang4881_JA_836


title: Wang682-C_JA-57


title: Wang678_JA-50


title: Wang4029_JA-121


title: Wang4027_JA-115


title: Wang4916_JA_903


title: Wang4851_JA_751


title: Wang674_JA-44


title: Wang4025_JA-113


title: Wang677_JA-49


title: Wang672_JA-40


title: Wang4917_JA_909


title: Wang676_JA-48


title: Wang4024_JA-112


title: Wang673_JA-41


title: Wang4026_JA-114


title: Wang4849_JA_741


title: Wang4878_JA_820


title: Wang4915_JA_901


title: Wang4023_JA-111


title: Wang4018_JA-106


title: Wang4543_JA212@2


title: Wang4017_JA-105


title: Wang4855_JA_760@2


title: Wang4019_JA-107


title: Wang4616_JA747


title: Wang4914_JA_900


title: Wang671_JA-39


title: Wang4021_JA-109


title: Wang4892_JA_849@2


title: Wang667-2_JA-34


title: Wang4014_JA-100


title: Wang4859_JA_768@2


title: Wang670_JA-38


title: Wang4020_JA-108


title: Wang665_JA-17


title: Wang666-R_JA-33


title: Wang664_JA-31


title: Wang4016_JA-104


title: Wang4015_JA-103


title: Wang4874_JA_813


title: Wang4875_JA_815


title: Wang4877_JA_817


title: Wang668_JA-35


title: Wang669-2_JA-37


title: Wang659_JA-21


title: Wang4597_JA648


title: Wang4843_JA_729


title: Wang661_JA-27


title: Wang4847_JA_737


title: Wang4898_JA_857@2


title: Wang663_JA-29


title: Wang4632_JA806


title: Wang4840_JA_726


title: Wang4594_JA642


title: Wang4870_JA_808


title: Wang4841_JA_727


title: Wang4872_JA_810


title: Wang4631_JA804


title: Wang4869_JA_805


title: Wang4592_JA640


title: Wang662_JA-28


title: Wang660_JA-22


title: Wong657subA


title: Wang4858_JA_767@2


title: Wang4871_JA_809


title: Wang4842_JA_728


title: Wang654_Ja-15


title: Wang4595_JA646


title: Wang4601_JA550


title: Wang4596_JA647


title: Wang658_JA-20


title: Wong655subA


title: Wang4598_JA710


title: Wang4839_JA_716


title: Wang653_Ja-14


title: Wang4593_JA641


title: Wang4589_JA631


title: Wang4835_JA_633


title: Wang4590_JA634


title: Wang4603_JA703


title: Wang4591_JA637


title: Wang4617_JA749@C


title: Wong656subA


title: Wang4836_JA_635


title: Wang4612_JA712


title: Wang652-R_JA-11


title: Wang4604_JA707


title: Wong648subA


title: Wang4613_JA713


title: Wang4890_JA_847@2


title: Wang4819_JA_540


title: Wang4818_JA_290


title: Wang4833_JA_627


title: Wang650_JA-8


title: Wang4829_JA_620


title: Wong646subA


title: Wang4600_JA546


title: Wang4897_JA_856@2


title: Wang4826_JA_614


title: Wang4614_JA714


title: Wang4583_JA292


title: Wang4588_JA629


title: Wang4582_JA288


title: Wang4823_JA_611


title: Wong651subA


title: Wang4584_JA293


title: Wong649subA


title: Wang4828_JA_616


title: Wang4580_JA285


title: Wang4827_JA_615


title: Wang4825_JA_613


title: Wang4581_JA287


title: Wong647subA


title: Wang4817_JA_286


title: 0080_2622_H133A_SMJ20


title: Wang4820_JA_605


title: Wang4586_JA601


title: Wang4812_JA_277


title: Wang4585_JA600


title: Wang4889_JA_846@2


title: Wang4857_JA_765@2


title: Wang4630_JA798@C


title: Wang4813_JA_278


title: skeletal muscle, myotubes: RNA420_e1_le2

status: Public on Nov 24 2004

description:
Murine myotubes
Treatment, type=grow, description=Truncated Egr-3.

source_name: skeletal muscle, myotubes


title: brain, hippocampus: B-3-1_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Isocaloric diet, naive animals

source_name: brain, hippocampus


title: brain, hippocampus: A-3-3_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Alcohol diet, naive animals


title: Wang4587_JA602


title: brain, hippocampus: B-3-2_e1_le1


title: brain, hippocampus: A-3-4_e1_le1


title: brain, hippocampus: A-3-1_e1_le1


title: skeletal muscle, myotubes: RNA276_e1_le2

description: Murine myotubes


title: skeletal muscle, myotubes: RNA275_e1_le2

description:
Murine myotubes
Treatment, type=acclimatization


title: brain, hippocampus: B-1-2_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Isocaloric diet, CFC training


title: brain, hippocampus: A-1-2_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Alcohol diet, CFC-training


title: brain, hippocampus: C-1-1_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Control diet, CFC training


title: skeletal muscle, myotubes: RNA419_e1_le2

description:
Murine myotubes
Treatment, type=grow, description=This is the wildtype.


title: brain, hippocampus: A-3-2_e1_le1


title: brain, hippocampus: C-3-2_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Control diet, naive animals


title: brain, hippocampus: B-1-4_e1_le1


title: brain, hippocampus: A-1-3_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Alcohol diet, CFC training


title: brain, hippocampus: B-1-3_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Icocaloric diet, CFC training


title: brain, hippocampus: PR-CA1-1_e1_le1

description:
hippocampal glutamatergic CA1 pyramidal neurons
Treatment, type=behavioral_stimulus


title: brain, hippocampus: CON-CA1-A8_e1_le1

description:
hippocampal glutamatergic CA1 pyramidal neurons
Treatment, type=behavioral_stimulus, description=These are control animals.


title: brain, hippocampus: B-1-1_e1_le1


title: brain, hippocampus: PR-DG-A3_e1_le1

description:
dentate granule cells
Treatment, type=acclimatization


title: brain, hippocampus: PR-DG-A25_e1_le1

description: dentate granule cells


title: brain, hippocampus: CON-CA3-A8_e1_le1

description:
hippocampal glutamatergic CA3 pyramidal neurons
Treatment, type=behavioral_stimulus, description=These are untreated animals.


title: brain, hippocampus: PR-CA3-A3_e1_le1

description: hippocampal glutamatergic CA3 pyramidal neurons


title: brain, hippocampus: A-1-4_e1_le1


title: brain, hippocampus: PR-CA3-A25_e1_le1

description:
hippocampal glutamatergic CA3 pyramidal neurons
Treatment, type=acclimatization


title: brain, hippocampus: A-1-1_e1_le1


title: brain, hippocampus: CON-DG-A8_e1_le1

description:
dentate granule cells
Treatment, type=behavioral_stimulus, description=These are untreated animals.


title: brain, hippocampus: P5 Isocaloric diet_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Fed isocaloric diet


title: brain, hippocampus: P5 FAE 2_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Fetal alcohol exposed


title: brain, hippocampus: PR-CA3-11_e1_le1


title: brain, hippocampus: PR-DG-15_e1_le1

description: dentate granule cells


title: brain, hippocampus: PR-DG-11_e1_le1

description: dentate granule cells


title: brain, hippocampus: P5 FAE 1_e1_le1


title: brain, hippocampus: PR-DG-9_e1_le1

description: dentate granule cells


title: brain, hippocampus: P5 Control 1_e1_le1

description:
rat hippocampus
Treatment, type=pharmacogenomic_treatment, description=Fed control diet


title: brain, hippocampus: PR-CA1-9_e1_le1

description: hippocampal glutamatergic CA1 pyramidal neurons


title: brain, hippocampus: P5 Control 2_e1_le1


title: brain, hippocampus: PR-DG-8_e1_le1

description: dentate granule cells


title: brain, hippocampus: PR-CA1-15_e1_le1


title: brain, hippocampus: CON-CA3-A5_e1_le1


title: brain, hippocampus: PR-CA3-9_e1_le1


title: brain, hippocampus: CON-CA1-A5_e1_le1


title: brain, hippocampus: PR-CA1-A3_e1_le1


title: brain, hippocampus: PR-CA1-11_e1_le1


title: brain, hippocampus: CON-DG-A5_e1_le1

description: dentate granule cells


title: brain, hippocampus: PR-CA1-4_e1_le1


title: brain, hippocampus: PR-CA1-8_e1_le1


title: brain, hippocampus: PR-CA3-1_e1_le1


title: brain, hippocampus: PR-DG-4_e1_le1

description: dentate granule cells


title: brain, hippocampus: PR-CA1-A25_e1_le1


title: brain, hippocampus: CON-DG-26_e1_le1

description: dentate granule cells


title: brain, hippocampus: PR-CA3-4_e1_le1


title: brain, hippocampus: CON-CA1-26_e1_le1


title: brain, hippocampus: PR-DG-1_e1_le1

description: dentate granule cells


title: brain, hippocampus: CON-CA3-22_e1_le1


title: brain, hippocampus: CON-CA1-19_e1_le1


title: brain, hippocampus: CON-DG-22_e1_le1

description: dentate granule cells


title: brain, hippocampus: CON-CA3-26_e1_le1


title: brain, hippocampus: CON-CA1-22_e1_le1


title: brain, hippocampus: CON-DG-19_e1_le1

description: dentate granule cells


title: hippocampus: Sample #5_e1_le1

description: hippocampus

source_name: hippocampus


title: brain, hippocampus: CON-DG-13_e1_le1

description: dentate granule cells


title: brain, hippocampus: PR-CA3-8_e1_le1


title: hippocampus: Sample #6_e1_le1

description: hippocampus


title: kidney, entire organ: CNMC Stratagene Universal RNA 3_e1_le1

description:
Total RNA from Stratagene Universal RNA, technical replicate 3.  Please see http://www.stratagene.com/products/displayProduct.aspx?pid=439 for more details.
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform

source_name: kidney, entire organ


title: hippocampus: Sample #3_e1_le1

description: hippocampus


title: brain, hippocampus: CON-CA1-13_e1_le1


title: brain, hippocampus: CON-CA3-10_e1_le1


title: kidney, entire organ: TGen Stratagene Universal RNA 3_e1_le1


title: kidney, entire organ: TGen Normal Kidney 2_e1_le1

description:
Total RNA from kidney, technical replicate 2
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: kidney, entire organ: TGen Stratagene Universal RNA 2_e1_le1

description:
Total RNA from Stratagene Universal RNA, technical replicate 2.  Please see http://www.stratagene.com/products/displayProduct.aspx?pid=439 for more details.
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: kidney, entire organ: CNMC Normal Kidney 4_e1_le1

description:
Total RNA from kidney, technical replicate 4
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: kidney, entire organ: TGen Normal Spleen 3_e1_le1

description:
Total RNA from spleen, technical replicate 3
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: hippocampus: Sample #4_e1_le1

description: hippocampus


title: kidney, entire organ: TGen Normal Spleen 2_e1_le1

description:
Total RNA from spleen, technical replicate 2
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: kidney, entire organ: TGen Normal Spleen 1_e1_le1

description:
Total RNA from spleen, technical replicate 1
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: brain, hippocampus: CON-CA3-19_e1_le1


title: kidney, entire organ: TGen Normal Liver 1_e1_le1

description:
Total RNA from liver, technical replicate 1
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: kidney, entire organ: TGen Normal Kidney 3_e1_le1

description:
Total RNA from kidney, technical replicate 3
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: kidney, entire organ: TGen Normal Liver 3_e1_le1

description:
Total RNA from liver, technical replicate 3
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: brain, hippocampus: CON-CA3-13_e1_le1

description: hippocampal glutamatergic CA3 pyramidal neurons


title: kidney, entire organ: CNMC Stratagene Universal RNA 2_e1_le1


title: kidney, entire organ: TGen Normal Kidney 1_e1_le1

description:
Total RNA from kidney, technical replicate 1
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: kidney, entire organ: CNMC Stratagene Universal RNA 1_e1_le1

description:
Total RNA from Stratagene Universal RNA, technical replicate 1.  Please see http://www.stratagene.com/products/displayProduct.aspx?pid=439 for more details.
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: kidney, entire organ: TGen Normal Liver 2_e1_le1

description:
Total RNA from liver, technical replicate 2
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: hippocampus: Sample #2_e1_le2

description: hippocampus


title: hippocampus: Sample #1_e1_le1

description: hippocampus


title: kidney, entire organ: TGen Stratagene Universal RNA 1_e1_le1


title: skeletal muscle, myotubes: RNA276_e1_le1

description: Murine myotubes


title: brain, hippocampus: CON-CA1-10_e1_le1


title: brain, hippocampus: CON-DG-10_e1_le1

description: dentate granule cells


title: brain, hippocampus: CON-CA1-6_e1_le1


title: brain: 1-WT36h_e1_le1

description: embryonic brain

organism: Danio rerio

source_name: brain


title: skeletal muscle, myotubes: RNA420_e1_le1

description:
Murine myotubes
Treatment, type=grow, description=Truncated Egr-3.


title: skeletal muscle, myotubes: RNA275_e1_le1

description:
Murine myotubes
Treatment, type=acclimatization


title: brain, hippocampus: CON-CA1-3_e1_le1

description: hippocampal glutamatergic CA1 pyramidal neurons


title: brain, hippocampus: CON-DG-3_e1_le1

description: dentate granule cells


title: kidney, entire organ: CNMC Normal Spleen 1_e1_le1


title: kidney, entire organ: CNMC Normal Liver 1_e1_le1


title: kidney, entire organ: CNMC Normal Spleen 3_e1_le1


title: brain, hippocampus: CON-CA3-3_e1_le1


title: kidney, entire organ: CNMC Normal Liver 2_e1_le1


title: kidney, entire organ: CNMC Normal Liver 3_e1_le1


title: skeletal muscle, myotubes: RNA419_e1_le1

description:
Murine myotubes
Treatment, type=grow, description=This is the wildtype.


title: kidney, entire organ: CNMC Normal Kidney 2_e1_le1

description:
Total RNA from kidney, technical replicate 2
Treatment, type=acclimatization, description=None
Sample_author: Consortium,,Cross Platform


title: kidney, entire organ: CNMC Normal Spleen 2_e1_le1


title: kidney, entire organ: CNMC Normal Kidney 1_e1_le1


title: brain: 2-Foggy36_e1_le1

description: embryonic brain


title: brain: 1-Foggy36_e1_le1

description: embryonic brain


title: brain: 3-Foggy36_e1_le1

description: embryonic brain


title: kidney, entire organ: CNMC Normal Kidney 3_e1_le1


title: brain, SNc and VTA: SNc8_e1_le1

status: Public on Oct 14 2004

description: Control rat 8 - substantia nigra

source_name: brain, SNc and VTA


title: brain, SNc and VTA: VTA4_e1_le1

description: Control rat 4  ventral tegmental area


title: brain, hippocampus: KA72-I_e1_le1

description:
rat hippocampus
Treatment, type=time_course, measurement=72.0 h


title: brain, hippocampus: C72-I_e1_le1


title: brain, SNc and VTA: VTA5_e1_le1

description: Control rat 5  ventral tegmental area


title: brain, SNc and VTA: SNc7_e1_le1

description: Control rat 7  substantia nigra


title: brain, hippocampus: KA240-II_e1_le1

description:
rat hippocampus
Treatment, type=time_course, measurement=240.0 h


title: brain, hippocampus: C240-II_e1_le1


title: brain, hippocampus: KA72-III_e1_le1


title: brain, SNc and VTA: SNc4_e1_le1

description: Control rat 4  substantia nigra


title: brain, hippocampus: KA24-I_e1_le1

description:
rat hippocampus
Treatment, type=time_course, measurement=24.0 h


title: brain, SNc and VTA: SNc3_e1_le1

description: Control rat 3  substantia nigra


title: brain, SNc and VTA: VTA1_e1_le1

description: Control rat 1  ventral tegmental area


title: brain, SNc and VTA: VTA6_e1_le1

description: Control rat 6  ventral tegmental area


title: brain, SNc and VTA: VTA8_e1_le1

description: Control rat 8  ventral tegmental area


title: brain, SNc and VTA: SNc2_e1_le1

description: Control rat 2  substantia nigra


title: brain, hippocampus: KA240-III_e1_le1


title: brain, hippocampus: KA24-II_e1_le1


title: brain, hippocampus: C240-III_e1_le1


title: brain, hippocampus: C240-I_e1_le1


title: brain, SNc and VTA: SNc1_e1_le1

description: Control rat 1 - substantia nigra


title: brain, SNc and VTA: VTA3_e1_le1

description: Control rat 3  ventral tegmental area


title: brain, hippocampus: C72-II_e1_le1


title: brain, SNc and VTA: SNc6_e1_le1

description: Control rat 6  substantia nigra


title: brain, hippocampus: C72-III_e1_le1


title: brain, hippocampus: KA72-II_e1_le1


title: brain, SNc and VTA: SNc5_e1_le1

description: Control rat 5  substantia nigra


title: brain, hippocampus: KA6-II_e1_le1

description:
rat hippocampus
Treatment, type=time_course, measurement=6.0 h


title: brain, SNc and VTA: VTA2_e1_le1

description: Control rat 2  ventral tegmental area


title: brain, hippocampus: KA240-I_e1_le1


title: brain, hippocampus: KA24-III_e1_le1


title: brain, hippocampus: C24-II_e1_le1


title: brain, hippocampus: KA6-III_e1_le1


title: brain, hippocampus: KA6-I_e1_le1


title: brain, hippocampus: C1-I_e1_le1

description:
rat hippocampus
Treatment, type=time_course, measurement=1.0 h


title: brain, hippocampus: C24-I_e1_le1


title: brain, hippocampus: C24-III_e1_le1


title: brain, hippocampus: KA1-III_e1_le1


title: brain, hippocampus: KA1-II_e1_le1


title: brain, hippocampus: C1-II_e1_le1


title: brain, hippocampus: C6-III_e1_le1


title: brain, hippocampus: KA1-I_e1_le1


title: brain, hippocampus: C1-III_e1_le1


title: brain, hippocampus: C6-II_e1_le1


title: brain, hippocampus: Ctr-72h-P15-II_e1_le1

description:
Control rats 72h after injection with PBS
Treatment, type=time_course, description=Control animals are treated with PBS, measurement=72.0 h


title: brain, hippocampus: Ctr-72h-P15-III_e1_le1


title: brain, hippocampus: KA-24h-P15-II_e1_le1

description:
Rats 24h after injection with dose kainate.
Treatment, type=time_course, description=KA animals are treated with kainate., measurement=24.0 h


title: brain, hippocampus: C6-I_e1_le1


title: brain, hippocampus: KA-24h-P15-III_e1_le1


title: brain, hippocampus: Ctr-240h-P15-I_e1_le1

description:
Control rats 240h after injection with PBS
Treatment, type=time_course, description=Control animals are treated with PBS, measurement=240.0 h


title: brain, hippocampus: KA-6h-P15-II_e1_le1

description:
Rats 6h after injection with dose kainate.
Treatment, type=time_course, description=KA animals are treated with kainate., measurement=6.0 h


title: brain, hippocampus: Ctr-240h-P15-III_e1_le1


title: brain, hippocampus: Ctr-24h-P15-I_e1_le1

description:
Control rats 24h after injection with PBS
Treatment, type=time_course, description=Control animals are treated with PBS, measurement=24.0 h


title: brain, hippocampus: KA-72h-P15-II_e1_le1

description:
Rats 72h after injection with dose kainate.
Treatment, type=time_course, description=KA animals are treated with kainate., measurement=72.0 h


title: brain, hippocampus: Ctr-240h-P15-II_e1_le1


title: brain, hippocampus: Ctr-6h-P15-I_e1_le1

description:
Control rats 6h after injection with PBS
Treatment, type=time_course, description=Control animals are treated with PBS, measurement=6.0 h


title: brain, hippocampus: KA-240h-P15-III_e1_le1

description:
Rats 240h after injection with dose kainate.
Treatment, type=time_course, description=KA animals are treated with kainate., measurement=240.0 h


title: brain, hippocampus: Ctr-72h-P15-I_e1_le1


title: brain, hippocampus: Ctr-1h-P15-III_e1_le1

description:
Control rats 1h after injection with PBS
Treatment, type=time_course, description=Control animals are treated with PBS, measurement=1.0 h


title: brain, hippocampus: Ctr-24h-P15-II_e1_le1


title: brain, hippocampus: KA-72h-P15-I_e1_le1


title: brain, hippocampus: KA-6h-P15-I_e1_le1


title: brain, hippocampus: KA-240h-P15-I_e1_le1


title: brain, hippocampus: KA-1h-P15-III_e1_le1

description:
Rats 1h after injection with dose kainate.
Treatment, type=time_course, description=KA animals are treated with kainate., measurement=1.0 h


title: brain, hippocampus: Ctr-24h-P15-III_e1_le1


title: brain, hippocampus: KA-6h-P15-III_e1_le1


title: brain, hippocampus: KA-240h-P15-II_e1_le1


title: brain, hippocampus: KA-24h-P15-I_e1_le1


title: brain, hippocampus: KA-1h-P15-II_e1_le1


title: brain, hippocampus: ENKA1_e1_le1

description:
rat hippocampi (pooled from 3-4 animals)
Treatment, type=pharmacogenomic_treatment, description=KA-treated at P20 reared in an enriched environment as a group of 8 rats per large cage


title: brain, hippocampus: KA1_e1_le1

description:
rat hippocampi (pooled from 3-4 animals)
Treatment, type=pharmacogenomic_treatment, description=KA-treated at P20 reared isolated in individual cages for 10 days


title: brain, hippocampus: Ctr-6h-P15-II_e1_le1


title: brain, hippocampus: KA2_e1_le1


title: brain, hippocampus: Ctr-1h-P15-I_e1_le1


title: brain, hippocampus: ENC1_e1_le1

description:
rat hippocampi (pooled from 3-4 animals)
Treatment, type=pharmacogenomic_treatment, description=PBS-treated at P20 reared in an enriched environment as a group of 8 rats per large cage


title: brain, hippocampus: ENC2_e1_le1


title: spinal cord, spinal cord: RNA 499_e1_le2

description:
Pooled total RNA from (3) P27 L3-L5 wild type spinal cords
Treatment, type=acclimatization

source_name: spinal cord, spinal cord


title: spinal cord, spinal cord: RNA 500_e1_le1

description:
Pooled total RNA from (3) P27 L3-L5 Egr3-deficient spinal cords
Treatment, type=acclimatization


title: brain, hippocampus: Ctr-1h-P15-II_e1_le1


title: brain, hippocampus: KA-72h-P15-III_e1_le1


title: brain, hippocampus: ENKA3_e1_le1


title: brain, hippocampus: C1_e1_le1

description:
rat hippocampi (pooled from 3-4 animals)
Treatment, type=pharmacogenomic_treatment, description=PBS-treated at P20 reared isolated in individual cages for 10 days before sacrifice


title: brain, hippocampus: ENKA2_e1_le1


title: brain, hippocampus: KA-1h-P15-I_e1_le1


title: spinal cord, spinal cord: RNA450_e1_le2

description: Pooled total RNA from (3) P27 L3-L5 Egr3-deficient spinal cords


title: brain, hippocampus: ENC3_e1_le1

description:
rat hippocampi (pooled from 3-4 samples)
Treatment, type=pharmacogenomic_treatment, description=PBS-treated at P20 reared in an enriched environment as a group of 8 rats per large cage


title: brain, hippocampus: Ctr-6h-P15-III_e1_le1


title: brain, hippocampus: C3_e1_le1


title: spinal cord, spinal cord: RNA 500_e1_le2


title: brain, hippocampus: C2_e1_le1


title: brain, hippocampus: KA3_e1_le1


title: spinal cord, spinal cord: RNA450_e1_le1


title: spinal cord, spinal cord: RNA 499_e1_le1


title: CFTR Knockout Mouse Jejunum

status: Public on Aug 27 2003

city: Cincinnati

first: Lara

last: Gawenis

state: OH

institute: University of Cincinnati College of Medicine

description: Incyte UniGem 1.31 microarray data from wild-type and CFTR knockout (UNC strain) mice.  The sample for each channel consists of pooled RNA from 3 mice.

source_name: small intestine from 3 CFTR knockout mice (UNC strain)

source_name: small intestine from 3 CFTR wild-type mice (UNC strain)