title: plasma 9 umbilical cord [II]

description:
PL9U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery

source_name: umbilical cord plasma

value: umbilical cord


title: GenUT_1

status: Public on Jan 08 2014

type: RNA

city: Curitiba

first: Danielle

last: Malheiros

state: Paraná

address: Centro Politecnico

department: Genetics

country: Brazil

institute: Federal University of Paraná

description: CodeLink™ Human Whole Genome Bioarrays comprised of approximately 55,000 30-mer probes designed to conserved exons across the transcripts of targeted genes

hyb_protocol: Set the shaker speed to 300 rpm and incubate slides for 18–24 h at 37 ºC, maintaining a consistent hybridization time for comparative experiments. Post-hybridization wash.Remove the Flex Chamber using the hybridization removal tool to hold the bioarray in place while peeling the Flex Chamber off at a 60º angle. Then, place the bioarrays into the bioarray rack while it sits inside the medium reagent reservoir containing 0.75×TNT. Transfer the bioarray rack to the large reagent reservoir containing preheated 0.75×TNT, and incubate at 46 °C for exactly 1 h. Do not exceed 1 h incubation.

scan_protocol: The scanned output files (GenePix™4000B) of the CodeLink data set were analyzed using CodeLink Expression Analysis software (Amersham Biosciences, Piscataway, USA).

data_processing: Average difference values were normalised to median over the array. The data were filtered so that only those genes that were adequately measured on 75% of the arrays were included.

molecule: total RNA

organism: Homo sapiens

source_name: CD4+ T lymphocytes from peripheral blood

label_protocol: Biotin-labelled cRNA target is prepared by a linear amplification method. The poly(A)+ RNA subpopulation (within the total RNA population) is primed for reverse transcription by a DNA oligonucleotide containing the T7 RNA polymerase promoter 5′ to a d(T)24 sequence. After second-strand cDNA synthesis, the cDNA serves as the template for anin vitro transcription (IVT) reaction to produce the target cRNA. The IVT is performed in the presence of biotinylated nucleotides to label the target cRNA. This method produces approximately 1000-fold to 5000-fold linear amplification of the input poly(A) + RNA. Fragment cRNA. In 25 µl total volume, add 10 µg of cRNA to 5 µl of 5×fragmentation buffer and incubate at 94 ºC for 20 minutes. Prepare hybridization reaction mixture.Bring 10 µg of fragmented cRNA, 78 µl of hybridization buffer component A, and 130 µl of hybridization buffer component B to a final volume of 260 µl with water. Incubate at 90 ºC for 5 minutes and immediately chill on ice for 5–30 minutes.

extract_protocol: Total RNA from CD4+ T cells was isolated using the column purification system of the RNeasy Protect Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer's protocol.

tag: age

tag: cell type

value: CD4+ T

tag: disease state

value: Pemphigus foliaceus

tag: clinical form

value: Generalized

tag: treatment

tag: Sex

value: Female


title: Vehicle DPBS, 2wks, biological rep 5

city: groton

first: Petra

last: Koza-Taylor

state: CT

address: Eastern Point Road

country: USA

institute: Pfizer

description: Gene expression data of liver collected from mouse on day 14 after repeated administration (once on Day 1, 4, 8, and 11) of vehicle (DPBS) by s.c. (dose volume of 10 mL/kg)

hyb_protocol: Purified cRNA was fragmented using a 5x fragmentation buffer, then a hybridization cocktail was prepared and added to the fragmentation product using the Hybridization, Wash and Stain kit (Affymetrix), applied to GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix) at the appropriate volume and concentration, and incubated at 45°C for 16 hours.

scan_protocol: Arrays were scanned by the Affymetrix GeneChip Scanner.

data_processing: Robust microarray analysis (RMA) background correction and quantile normalization were performed by utilizing an internal Microarray Data Analysis System (MiDAS) at Pfizer. All RNA samples utilized for transcriptomic data generation had RIN values >7.0 and passed quality control thresholds. Prior to analysis of differentially expressed genes, cRNA integrity was assessed by calculating specific 3’ to 5’ signal intensity ratios for beta-actin and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) probe-sets and visualized to identify outlier samples by Principal Component Analysis (PCA). Three samples (one each in the NTS-1 group at 8 h, the TS-2 group at 16 h, and the HTS-3 at 8 h) in the early time course study and one sample in the NTS-1 group in the 2-week study, which had a 3’ to 5’ signal intensity ratio for GAPDH > 1.7 and showed a large separation from their cohorts on PCA plots, were removed due to poor cRNA and gene chip quality.

label: biotin

organism: Mus musculus

source_name: Liver collected from mice administered DPBS (vehicle) for 2 wks (repeated administration)

label_protocol: RNA samples were converted into cRNA using the Single-Round RNA Amplification and Biotin Labeling System (Enzo) according to the manufacturer’s instructions.

growth_protocol: Male CD-1 mice, 6 to 8-week-old at the study initiation, were obtained from Charles River Laboratories. Animals were acclimated to the laboratory environment for a minimum of 3 days prior to initiation of dosing. All mice were housed under standard conditions with a 12-hour light/dark cycle and free access to Purina 5002 Certified Rodent Diet (PMI Nutrition International) and water.

extract_protocol: RNA was isolated from liver using the Qiagen RNeasy Mini Plus Kit (Qiagen) according to the manufacturer’s instructions.

treatment_protocol: All the LNA gapmers were dissolved in Dulbecco’s phosphate buffered saline (DPBS, Lonza). Animals were allocated to study groups using a computer-assisted randomization procedure based on body weights. Mice (10 mice/group at each time point) were administered vehicle (DPBS), NTS-1, TS-2, or HTS-3 at 25 mg/kg (dose volume of 10 mL/kg) by subcutaneous injection once on Day 1. Eight, 16, and 72 h after a single injection, mice were euthanized for the necropsy. Liver samples from the HTS-3 group were only collected at 8 and 16 h; the 72 h time point was not available since all mice at the 72 h time point in the HTS-3 group were found dead or sacrificed due to the moribund conditions on dDay 3 (at least 48 h post administration). 3 or 4 samples with the highest-ranking severity of minor hepatic hypertrophy score were selected for RNA isolation and subsequent gene expression analysis.

tag: strain

tag: gender

value: Male

tag: tissue

value: Liver

value: 6-8 wk-old at Dose Initiation


title: whole blood 9 postpartum [II]

city: Medford

first: Donna

middle: K

last: Slonim

state: MA

address: 161 College Ave.

department: Computer Science

institute: Tufts University

description:
WB9P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery

hyb_protocol: Approximately 15 μg of amplified and labeled cRNA from whole blood and 5 μg of amplified and labeled cDNA from plasma samples were fragmented and hybridized onto GeneChip Human Genome U133A microarrays (Affymetrix).  Arrays were washed and stained with streptavidin-phycoerythrin.

scan_protocol: Arrays were scanned on a GeneArray Scanner (Affymetrix), using the GeneChip Microarray Suite 5.0 (Affymetrix).

data_processing: Samples in each data set (whole blood only, or whole blood vs. plasma) were quantile normalized in R 2.3.0 using the Affy package in Bioconductor 1.8.

source_name: postpartum maternal whole blood

label_protocol: Samples were labeled using the FL-Ovation cDNA Biotin Module V2 (NuGEN, San Carlos, CA)

extract_protocol: Whole blood samples (7.5 cc) were obtained in 3 PaxGene (PreAnalytiX) tubes immediately prior to cesarean delivery and 24 to 36 hours postpartum and from the corresponding umbilical cord(s).  Samples were stored at room temperature for 6 to 36 hours prior to RNA extraction in accordance with the PaxGene blood RNA kit (PreAnalytiX) manufacturer’s protocol. During extraction, on-column DNase digestion (RNase-Free DNase Set; Qiagen) was performed to eliminate DNA contamination.  For plasma samples, whole blood was collected in 10-cc EDTA Vacutainer blood tubes (BD) and underwent an initial spin at 1,600 g for 10 minutes at 4°C. Harvested plasma was then transferred into microcentrifuge tubes and underwent an additional spin at 15,350 g for 10 minutes at 4°C to eliminate any residual cells. Plasma extraction was performed following the protocol in Ng E.K.O., et al. Clin. Chem. 2002;48:1212–1217.

value: whole blood

tag: tissue source

value: postpartum


title: plasma 9 antepartum [II]

description:
PL9A
gene expression from maternal blood prior to scheduled term Cesarean section delivery

source_name: antepartum maternal plasma

value: plasma

value: antepartum


title: whole blood 8 postpartum [II]

description:
WB8P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: plasma 8 postpartum [II]

description:
PL8P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery

source_name: postpartum maternal plasma


title: Vehicle DPBS, 2wks, biological rep 4


title: plasma 8 antepartum [II]

description:
PL8A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: PP4_1_004A_U133p2_100ng.CEL

city: Hørsholm

first: Thomas

last: Jensen

address: Venlighedsvej 1

department: lab

country: Denmark

institute: MPI

hyb_protocol: affy hyb wash stain

scan_protocol: affy standard

data_processing: R

source_name: blood

label_protocol: ambion messageamp

extract_protocol: Rneasy

value: female

tag: rmh lab code

tag: trtlong

value: Faslodex 250mg

tag: histtype

value: Infiltrating Ductal Carcinoma

tag: tgrade

value: Moderately Differentiated(G2)

tag: responder status (us)at last visit

value: SD


title: plasma 8 umbilical cord [II]

description:
PL8U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery

value: umbilical cord


title: whole blood 9 umbilical cord [II]

description:
WB9U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery

source_name: umbilical cord whole blood


title: whole blood 8 umbilical cord [II]

description:
WB8U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: whole blood 9 antepartum [II]

description:
WB9A
gene expression from maternal blood prior to scheduled term Cesarean section delivery

source_name: antepartum maternal whole blood


title: whole blood 8 antepartum [II]

description:
WB8A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: Vehicle DPBS, 2wks, biological rep 2


title: plasma 7 postpartum [II]

description:
PL7P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: plasma 7 umbilical cord [II]

description:
PL7U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: whole blood 7 postpartum [II]

description:
WB7P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: HTS-3, 16 hrs, biological rep 4

description: Gene expression data of liver collected from mouse at 16 hrs after a single administration of a severely toxic LNA gapmer sequence (HTS-3) at 25 mg/kg by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered HTS-3 at 16 hrs after a single administration


title: plasma 7 antepartum  [II]

description:
PL7A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: whole blood 7 antepartum  [II]

description:
WB7A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: Vehicle DPBS, 2wks, biological rep 1

description: Gene expression data of liver collected from mouse on day 14 after repeated administration (once on Day 1, 4, 8, and 11) of vehicle (DPBS) by s.c. (dose volume of 10 mL/kg)


title: HTS-3, 16 hrs, biological rep 2


title: HTS-3, 16 hrs, biological rep 3


title: Vehicle DPBS, 2wks, biological rep 3


title: whole blood 9 antepartum [I]


title: HTS-3, 16 hrs, biological rep 1


title: whole blood 9 umbilical cord [I]


title: whole blood 9 postpartum [I]

description:
WB9P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: whole blood 7 umbilical cord [II]

description:
WB7U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: TS-2, 72 hrs, biological rep 3

description: Gene expression data of liver collected from mouse at 72 hrs after a single administration of a toxic LNA gapmer sequence (TS-2) at 25 mg/kg by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered TS-2 at 72 hrs after a single administration


title: HTS-3, 8 hrs, biological rep 3

source_name: Liver collected from mice administered HTS-3 at 8 hrs after a single administration


title: whole blood 7 umbilical cord [I]


title: whole blood 8 postpartum [I]

description:
WB8P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: whole blood 7 postpartum [I]


title: HTS-3, 8 hrs, biological rep 2

description: Gene expression data of liver collected from mouse at 8 hrs after a single administration of a severely toxic LNA gapmer sequence (HTS-3) at 25 mg/kg by s.c. (dose volume of 10 mL/kg)


title: whole blood 6 postpartum [I]

description:
WB6P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: TS-2, 72 hrs, biological rep 4


title: whole blood 8 antepartum [I]


title: whole blood 8 umbilical cord [I]


title: whole blood 6 umbilical cord [I]

description:
WB6U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: whole blood 6 antepartum [I]

description:
WB6A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: whole blood 5 umbilical cord [I]

description:
WB5U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: TS-2, 16 hrs, biological rep 3

description: Gene expression data of liver collected from mouse at 16 hrs after a single administration of a toxic LNA gapmer sequence (TS-2) at 25 mg/kg by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered TS-2 at 16 hrs after a single administration


title: TS-2, 72 hrs, biological rep 2


title: whole blood 5 antepartum [I]

description:
WB5A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: TS-2, 72 hrs, biological rep 1


title: HTS-3, 8 hrs, biological rep 1


title: whole blood 4 antepartum  [I]

description:
WB4A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: whole blood 4 postpartum [I]

description:
WB4P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: whole blood 5 postpartum [I]

description:
WB5P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: whole blood 3 postpartum [I]

description:
WB3P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: TS-2, 16 hrs, biological rep 2


title: whole blood 3 umbilical cord [I]

description:
WB3U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: TS-2, 16 hrs, biological rep 1


title: whole blood 4b umbilical cord (twin) [I]

description:
WB4Ub
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: whole blood 3 antepartum [I]

description:
WB3A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: whole blood 4a umbilical cord (twin) [I]

description:
WB4Ua
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: whole blood 2 antepartum [I]

description:
WB2A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: whole blood 2 umbilical cord [I]

description:
WB2U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: TS-2, 8 hrs, biological rep 4

description: Gene expression data of liver collected from mouse at 8 hrs after a single administration of a toxic LNA gapmer sequence (TS-2) at 25 mg/kg by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered TS-2 at 8 hrs after a single administration


title: whole blood 7 antepartum  [I]

description:
WB7A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: whole blood 1 postpartum [I]

description:
WB1P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery


title: whole blood 1 antepartum  [I]

description:
WB1A
gene expression from maternal blood prior to scheduled term Cesarean section delivery


title: TS-2, 8 hrs, biological rep 2


title: 8w_dmm_3

city: Oxford

first: Anastasios

last: Chanalaris

address: Roosevelt Drive

department: Kennedy Institute of Rheumatology

country: United Kingdom

institute: University of Oxford

description: replicate 3

hyb_protocol: Labelled cDNA was hybridised to an Illumina Mouse WG-6 v2.0 Expression BeadChip following the manufacturer's protocol.

scan_protocol: Bead array reader was used to detect the Cy3 fluorescence emmision according to the manufacturers protocol.

data_processing: Data were variance stabilised and quantile normalised using Lumi (v.2.8.0) in R (v.2.15.0). The detection p-value threshold was set to 0.01 (lumi default) and probes need to be successfully selected (p<0.01 in Lumi) in at least one sample to pass the selection.

source_name: 8 wks post-surgery_treated

label_protocol: Ovation Pico system was used to amplify the RNA (two rounds of SPIA amplification) and labeled with the FL-Ovatioon Biotin module V2. Quality control of amplified cDNA was performed with Agilent Bioanalyzer.

extract_protocol: RNA was extracted using QIAGEN micro kit with modifications. All samples were digested with Proteinase K for 30 minutes at 55 degrees C in RLT buffer prior to their application on the silica columns. RNA quality control was performed with agilent bioanalyser.

treatment_protocol: articular cartilage from the tibia plateaus of 8 knees was pooled in RNA Later and frozen. The pooled samples were thawed on ice RNA later removed and RLT buffer with 1% mercaptoethanol added. Samples disrupted with a scalpel and homogenised with a rotor stator 3 times for 10 seconds at a time, with a 5 second interval in between.

value: male

value: 18 weeks

value: articular cartilage from medial tibial plateau

value: destabilisation of the medial meniscus (DMM)

tag: time post surgery

value: 8 weeks


title: whole blood 1 umbilical cord [I]

description:
WB1U
gene expression from umbilical cord blood taken during scheduled term Cesarean delivery


title: NTS-1, 72 hrs, biological rep 3

description: Gene expression data of liver collected from mouse at 72 hrs after a single administration of a non-toxic LNA gapmer sequence (NTS-1) at 25 mg/kg by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered NTS-1 at 72 hrs after a single administration

value: Male

value: Liver


title: NTS-1, 72 hrs, biological rep 2

value: 6-8 wk-old at Dose Initiation


title: 4w_dmm_3

description: replicate 3

source_name: 4 wks post-surgery_treated

value: 14 weeks

value: 4 weeks


title: 2w_dmm_3

description: replicate 3

source_name: 2 wks post-surgery_treated

value: 12 weeks

value: 2 weeks


title: 4w_ctrl_2

description: replicate 2

source_name: 4 wks post-surgery_untreated

value: control


title: 4w_dmm_2

description: replicate 2


title: NTS-1, 16 hrs, biological rep 3

description: Gene expression data of liver collected from mouse at 16 hrs after a single administration of a non-toxic LNA gapmer sequence (NTS-1) at 25 mg/kg by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered NTS-1 at 16 hrs after a single administration


title: TS-2, 8 hrs, biological rep 1


title: 8w_ctrl_2

description: replicate 2

source_name: 8 wks post-surgery_untreated


title: 4w_ctrl_1

description: replicate 1


title: TS-2, 8 hrs, biological rep 3


title: 8w_dmm_1

description: replicate 1


title: 8w_dmm_2

description: replicate 2


title: 4w_dmm_1

description: replicate 1


title: 4w_ctrl_3

description: replicate 3


title: 8w_ctrl_1

description: replicate 1


title: NTS-1, 72 hrs, biological rep 1


title: 8w_ctrl_3

description: replicate 3


title: NTS-1, 16 hrs, biological rep 4

description: Gene expression data of liver collected from mouse at 16 hrs after a single administration of a non-toxic LNA gapmer sequence (NTS-1) at 25 mg/kgby s.c. (dose volume of 10 mL/kg)


title: NTS-1, 16 hrs, biological rep 2


title: NTS-1, 16 hrs, biological rep 1


title: 2w_ctrl_3

description: replicate 3

source_name: 2 wks post-surgery_untreated


title: NTS-1, 8 hrs, biological rep 3

description: Gene expression data of liver collected from mouse at 8 hrs after a single administration of a non-toxic LNA gapmer sequence (NTS-1) at 25 mg/kg by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered NTS-1 at 8 hrs after a single administration


title: 2w_dmm_1

description: replicate 1


title: Vehicle DPBS, 72 hrs, biological rep 3

description: Gene expression data of liver collected from mouse at 72 hrs after a single administration of (DPBS) by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered DPBS (vehicle) at 72 hrs after a single administration


title: A9M cells, UNC0638-treated 2

city: Montreal

first: Bernhard

last: Lehnertz

state: QC

address: 2950 Chemin polytechnique

department: IRIC

country: Canada

institute: University of Montreal

description:
Gene expression data from HoxA9/Meis1 transformed HSPCs, UNC0638 treated for 5 days
UNC0638_2

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affimetrix Mouse Gene 1.0 chip . GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.

data_processing: The data were analyzed with Genepattern suite (Broad Institute) and median scaling as normalization method.

source_name: transformed HSPCs

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2005, Affymetrix).

growth_protocol: Mouse HoxA9/Meis1 expressing HSPCs were cultured in DMEM containing 10% FBS, IL3, IL6 and SCF.

extract_protocol: Trizol (Invitrogen) standard protocol.

tag: cell line

value: HoxA9/Meis1(A9M)-transformed HSPCs

tag: agent


title: NTS-1, 8 hrs, biological rep 2

tag: age


title: NTS-1, 8 hrs, biological rep 1


title: Hypoxic H1299 Replicate 3

first: Katarzyna

last: Leszczynska

address: Old Road Campus Research Building

department: Oncology

description: Biological replicate 3 of 3. H1299 cells transfectd with WT or Mut p53 and treated with hypoxia for 16 h

hyb_protocol: Standard Agilent protocol

scan_protocol: The features extraction was performed with Agilent FE v10.5.1.1 and linear loess

data_processing: Linear loess

source_name: Hypoxic WT3

label_protocol: Standard Agilent protocol

growth_protocol: H1299 cells were cultured in DMEM with 10% FBS

extract_protocol: Total RNA extracted using Trizol following manufacturer's instructions

treatment_protocol: H1299 cells transfected with either wt p53 or mut p53 (175) were exposed to hypoxia (<0.1% O2, Bactron  chamber, Shel Lab) for 16 h or were left untreated in the normoxic humidified incubator (21% O2, 5% CO2).

tag: transfected with

value: p53 WT

tag: stress

value: Hypoxia

source_name: Hypoxic Mut3


title: A9M cells, DMSO-treated 1

description:
Gene expression data from HoxA9/Meis1 transformed HSPCs, DMSO treated for 5 days
CONTROL_1


title: whole blood 2 postpartum [I]

description:
WB2P
gene expression from maternal blood 24-36 hours following scheduled term Cesarean section delivery

source_name: postpartum maternal whole blood

value: whole blood

value: postpartum


title: Vehicle DPBS, 16 hrs, biological rep 3

description: Gene expression data of liver collected from mouse at 16 hrs after a single administration of (DPBS) by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered DPBS (vehicle) at 16 hrs after a single administration


title: Vehicle DPBS, 72 hrs, biological rep 1


title: 2w_dmm_2

description: replicate 2

value: male

tag: treatment


title: Vehicle DPBS, 72 hrs, biological rep 2


title: Hypoxic H1299 Replicate 2

description: Biological replicate 2 of 3. H1299 cells transfectd with WT or Mut p53 and treated with hypoxia for 16 h

source_name: Hypoxic WT2

source_name: Hypoxic Mut2


title: Normoxic H1299 Replicate 1

description: Biological replicate 1 of 1. H1299 cells transfectd with WT or Mut p53, left in normoxic inubator for 16 h

source_name: Normoxic WT

value: Normoxia

source_name: Normoxic Mut


title: A9M cells, DMSO-treated 2

description:
Gene expression data from HoxA9/Meis1 transformed HSPCs, DMSO treated for 5 days
CONTROL_2


title: A9M cells, UNC0638-treated 3

description:
Gene expression data from HoxA9/Meis1 transformed HSPCs, UNC0638 treated for 5 days
UNC0638_3


title: Vehicle DPBS, 16 hrs, biological rep 2


title: 2w_ctrl_2

description: replicate 2

tag: Sex

value: articular cartilage from medial tibial plateau


title: Hypoxic H1299 Replicate 1

description: Biological replicate 1 of 3. H1299 cells transfectd with WT or Mut p53 and treated with hypoxia for 16 h

source_name: Hypoxic WT1

source_name: Hypoxic Mut1


title: 2w_ctrl_1

description: replicate 1

tag: strain


title: A9M cells, DMSO-treated 3

description:
Gene expression data from HoxA9/Meis1 transformed HSPCs, DMSO treated for 5 days
CONTROL_3


title: INSKSL vitro/WTKSL vitro

city: Kamakura

first: Satoshi

last: Kondo

state: Kanagawa

address: Tebiro 6-10-1

department: New Projects Development Division

country: Japan

institute: Toray Industries,Inc.

description: in vivo (Balb/c BM/FL derived KSL cells were FACS sorted and retrovirally transduced either with IL7R -WT or -INS expanded on IMDM+20%FBS with 4-5 days with cytokine addition (mSCF100ng/uL+mTPO100ng/uL+hIL6 100ng/uL+hFlt3L25ng/uL+IL3 1ng/uL) .GFP+ cells were FACS sorted and pooled.)

hyb_protocol: Hybridized for 16 h at 37 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..

scan_protocol: 3D-Gene Scanner (Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).

data_processing: F635 Median column as Red signal and F532 Median column as Green signal. Global normalized, background subtracted data obtained from log2 of processed Green signal/processed Red signal.

source_name: 103 KSLWT

label_protocol: cDNA and Amino Allyl aRNA was synthesis by Amino Allyl MessageAmp II aRNA Amplification Kit (Ambion#1753). CyeDye Coupling and fragmentation were performed as the protocol supplied by TORAY Industries, Inc..

growth_protocol: Balb/c BM HSC/MPP or resultant leukemic cells were GFP+FACS sorted and lysed.

extract_protocol: Total RNA was isolated using the Rneasy Minikit (QIAGEN, Valencia, CA).

treatment_protocol: Retroviral transduction of HSC/MPP (in vitro) and BMT (for in vivo)

tag: cell type

value: KSL cells retrovirally transduced with WT vector

source_name: 103 KSLMUT

value: KSL cells retrovirally transduced with INS vector


title: INSCLP vivo/WT CLP vivo

description: in vivo (CLP cells cotransfected either IL7Rα-WT or -INS vvector were transplanted with sub-lethally (4Gy) irraditated recipients. The resultant mature B samples around day 60 were FACS sorted and pooled.

value: in vivo engrafted WT CLP derived IgM+B220+B cells

value: in vivo engrafted INS CLP derived IgM+B220+leukemic cells


title: INSCLP vitro/WTCLP vitro

description: in vitro (Balb/c CLP cells were FACS sorted and retrovirally transduced either with IL7R -WT or -INS expanded on IMDM+20%FBS with 5-7 days with cytokine addition (mSCF+hIL7+hFLt3L+OP9stroma) .GFP+ cells were FACS sorted and pooled.

value: CLP cells retrovirally transduced with WT vector

source_name: 130213 CLPMUT

value: CLP cells retrovirally transduced with INS vector


title: INS+ICN-KSL vivo/WT+ICN-KSL vivo

description: in vivo(KSL cells cotransfected either IL7Rα-WT or -INS vectors along with an intracellular Notch1 (ICN1) vector were transplanted with lethally irraditated recipients. The resultant T-ALL leukemic sample around day30-40 were FACS sorted and pooled)

value: in vivo engrafted Notch1 co-transduced WT-KSL derived leukemic T-ALL cells

value: in vivo engrafted Notch1 co-transduced INS-KSL derived leukemic T-ALL cells


title: INS KSL vivo/WT-KSL vivo

description: in vivo(KSL cells transfected either IL7Rα-WT or -INS vectors were transplanted with lethally irraditated recipients. CMP fraction of the resultant Myloid disorder samples around day40 were FACS sorted and pooled)

value: in vivo engrafted WT KSL derived myeloid progenitor (CMP) cells

value: in vivo engrafted INS KSL derived myeloid progenitor (CMP) cells


title: 0739_2XUF

city: Auckland

first: Talia

last: Grala

address: 3 Symonds St

country: New Zealand

institute: DairyNZ

description: Biological Replicate 10 of 10; 2XUF

hyb_protocol: 825ng of both Cy3 and Cy5 labelled cRNA was used for microarray hybridisation using the Agilent Gene Expression Hybridisation Kit (60-mer oligo microarray protocol version 4.0) (Agilent Technologies, Bioresearch Solutions Unit, 3500 Deer Creek Road, Palo Alto, CA 94034, USA). Dye-labelled, fragmented cRNA was then added to each Agilent 44k 60-mer oligonucleotide microarray, hybridised over night (17 hours), washed and allowed to air dry.

scan_protocol: Arrays were scanned using the Agilent SureScan microarray scanner at 5uM resolution.

data_processing: Agilent feature extraction software version 10.1 was used to analyse the scanned Agilent microarray. The 45 scanned microarray image files were uploaded to the feature extraction software. Using the design file (015354) the feature extraction software locates features and converts the extracted data from each feature into a quantitative log ratio. The software removes pixel outliers, does statistics on the non outlier pixels, subtracts background from features and flags any outlier features. The software was then used to perform a LOWESS (locally weighted linear regression analysis) dye normalisation and to calculate a p-value for each feature. Microarray data were imported into Genespring GX 12.5 (Agilent, Palo Alto, CA, USA) and filtered by presence and raw intensity (20th - 100th percentile) before generating a gene level experiment that averaged the expression of probes annotated to the same gene which was then exported for analysis.

organism: Bos taurus

source_name: Liver, 2XUF 3 weeks

label_protocol: 150ng of total RNA was labelled with Cy5 using an Agilent Low Input Quick Amp (LIQA) kit for each experimental sample, and labelled cRNA was then purified on column, quantified and dye coupling efficiency measured using the Nanodrop (Nanodrop Technologies, Wilmington, DE) instrument.  Equimolar amounts of each sample were pooled to generate a reference which was labelled with Cy3 as above.

extract_protocol: Liver tissue was homogenised in Qiagen buffer RLT (QIAGEN GmbH, QIAGEN, Hilden, Germany) using a TissueLyser instrument (QIAGEN).

treatment_protocol: Cows were allocated to one of four treatments; twice-daily milking and adequately-fed (2XAF), 2X and under-fed (fed 60% of requirements; 2XUF), once-daily milking AF (1XAF) or 1XUF at approx wk 5 postpartum. Treatments lastest for 3 weeks and liver tissue was then biopsied.

tag: milking frequency

value: 2X (twice-daily)

tag: feeding level

value: UF (under-fed)

source_name: pooled liver

value: pooled 2X, 1X, AF, UF


title: 0818_1XUF

description: Biological Replicate 11 of 11; 1XUF

source_name: Liver, 1XUF 3 weeks

value: 1X (once-daily)


title: 2078_2XAF

description: Biological Replicate 12 of 12; 2XAF

source_name: Liver, 2XAF 3 weeks

value: AF (adequately fed)


title: 0615_2XAF

description: Biological Replicate 11 of 12; 2XAF


title: Vehicle DPBS, 8 hrs, biological rep 1

description: Gene expression data of liver collected from mouse at 8 hrs after a single administration of (DPBS) by s.c. (dose volume of 10 mL/kg)

source_name: Liver collected from mice administered DPBS (vehicle) at 8 hrs after a single administration

tag: gender

value: Male

tag: tissue

value: Liver

value: 6-8 wk-old at Dose Initiation


title: Vehicle DPBS, 16 hrs, biological rep 1


title: ripening_night_treatment_rep2

city: Montpellier

first: markus

last: rienth

address: 2, Place Pierre Viala

country: France

institute: INRA Montpellier

hyb_protocol: Hybridization was performed on a NimbleGen microarray 090818 Vitis exp HX12 (Roche, NimbleGen Inc., Madison, WI), consisting of 29,549 predicted genes on the basis of the 12X grapevine V1 gene prediction version V1 http://srs.ebi.ac.uk/.

scan_protocol: Axon GenePix 4400A (Molecular Devices) at 532 nm (Cy3 absorption peak).

data_processing: The Robust Multi-array Analysis (RMA) algorithm was used for background correction, normalization and expression levels. Differential expression analysis was performed with the bayes t-statistics from the linear models for microarray data (limma). P-values were corrected for multiple-testing using the Benjamini-Hochberg's method.

organism: Vitis vinifera

source_name: ripening vitis vinifera berry, heat stress, night sampled

label_protocol: Labeling was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.

growth_protocol: Microvines grown under fully controlled environment in phytotrons.

extract_protocol: Qiagen RNeasy kit adapted to berry tissue.

treatment_protocol: Day/Night sampling on different berry development stages.

tag: cultivar

value: Pinot meunier

tag: genotype/variation

value: GAI mutant (DRCF)

value: berry

tag: developmental stage

value: ripening

value: heat stress

tag: time

value: night


title: ripening_day_treatment_rep2

source_name: ripening vitis vinifera berry, heat stress, day sampled

value: day


title: ripening_night_control_rep2

source_name: ripening vitis vinifera berry, control, night sampled

value: control


title: ripening_day_treatment_rep1


title: ripening_night_control_rep3


title: Vehicle DPBS, 8 hrs, biological rep 2


title: ripening_night_treatment_rep3


title: 0485_1XAF

description: Biological Replicate 11 of 12; 1XAF

source_name: Liver, 1XAF 3 weeks


title: Vehicle DPBS, 8 hrs, biological rep 3


title: 0548_1XUF

description: Biological Replicate 10 of 11; 1XUF


title: ripening_night_control_rep1


title: ripening_day_control_rep2

source_name: ripening vitis vinifera berry, control, day sampled


title: Liver_untreated_HESKOL_rep2

city: RTP

first: NIEHS

last: Microarray Core

state: NC

address: 111 T.W. Alexander Drive

department: DIR

institute: NIEHS

description:
US22502532_251486824188_S01_H.tif
US22502532_251486824188_S01_L.tif
Gene expression from untreated knockout liver

hyb_protocol: For each sample, 1.65ug of Cy3 labeled cRNAs were fragmented and hybridized for 17 hours in a rotating hybridization oven.

scan_protocol: Slides were washed and then scanned with an Agilent Scanner.

data_processing: Data was obtained using the Agilent Feature Extraction software (v9.5), using the 1-color defaults for all parameters.

source_name: Liver, untreated, rep2, knockout mouse

label_protocol: Starting with 500ng of total RNA, Cy3 labeled cRNA was produced according to manufacturer’s protocol.

growth_protocol: All mice used in this study were adrenalectomized to remove endogenous glucocorticoids.

extract_protocol: Total RNA was prepared using the Qiagen Rneasy Extraction method, Dnase treated and submitted for quality control and microarray.

treatment_protocol: For the treatment groups: Mice were injected (by I.P) with 1mg/kg Dexamethasone and the liver was harvested after 6 hours.

tag: age in weeks


title: 0735_1XAF

description: Biological Replicate 12 of 12; 1XAF


title: Liver_Dex-treated_HESKOL_rep1

description:
US22502532_251486824202_S01_H.tif
US22502532_251486824202_S01_L.tif
Gene expression from Dex-treated knockout liver

source_name: Liver, Dex-treated for 6hr, rep1, knockout mouse


title: ripening_day_control_rep3


title: 6519_1XUF

description: Biological Replicate 9 of 11; 1XUF


title: 0603_2XUF

description: Biological Replicate 9 of 10; 2XUF


title: Liver_untreated_HESKOL_rep3

source_name: Liver, untreated, rep3, knockout mouse


title: Liver_Dex-treated_HESKOL_rep2

source_name: Liver, Dex-treated for 6hr, rep2, knockout mouse


title: ripening_day_treatment_rep3


title: Liver_Dex-treated_HESKOL_rep3

source_name: Liver, Dex-treated for 6hr, rep3, knockout mouse


title: 3533_1XAF

description: Biological Replicate 10 of 12; 1XAF


title: A9M cells, UNC0638-treated 1

description:
Gene expression data from HoxA9/Meis1 transformed HSPCs, UNC0638 treated for 5 days
UNC0638_1

source_name: transformed HSPCs

tag: cell line

value: HoxA9/Meis1(A9M)-transformed HSPCs

tag: agent


title: veraison_night_treatment_rep1

source_name: veraison vitis vinifera berry, heat stress, night sampled

value: veraison


title: Liver_Dex-treated_wild type_rep3

description:
US22502532_251486824202_S01_H.tif
US22502532_251486824202_S01_L.tif
Gene expression from Dex-treated wild-type liver

source_name: Liver, Dex-treated for 6hr, rep3


title: 0746_1XUF

description: Biological Replicate 8 of 11; 1XUF

value: UF (under-fed)

source_name: pooled liver


title: ripening_day_control_rep1


title: Liver_Dex-treated_wild type_rep2

description:
US22502532_251486824188_S01_H.tif
US22502532_251486824188_S01_L.tif
Gene expression from Dex-treated wild-type liver

source_name: Liver, Dex-treated for 6hr, rep2


title: Liver_untreated_HESKOL_rep1

description:
US22502532_251486824189_S01_H.tif
US22502532_251486824189_S01_L.tif
Gene expression from untreated knockout liver

source_name: Liver, untreated, rep1, knockout mouse


title: Liver_untreated_wild type_rep2

description:
US22502532_251486824189_S01_H.tif
US22502532_251486824189_S01_L.tif
Gene expression from untreated wild-type liver

source_name: Liver, untreated, rep2


title: veraison_night_treatment_rep2


title: Liver_Dex-treated_wild type_rep1

source_name: Liver, Dex-treated for 6hr, rep1


title: veraison_day_control_rep3

source_name: veraison vitis vinifera berry, control, day sampled


title: 0733_2XUF

description: Biological Replicate 8 of 10; 2XUF

source_name: Liver, 2XUF 3 weeks

value: 2X (twice-daily)

value: pooled 2X, 1X, AF, UF


title: 6430_2XAF

description: Biological Replicate 10 of 12; 2XAF

source_name: Liver, 2XAF 3 weeks

value: AF (adequately fed)


title: 0801_2XAF

description: Biological Replicate 8 of 12; 2XAF


title: veraison_day_treatment_rep2

source_name: veraison vitis vinifera berry, heat stress, day sampled


title: veraison_day_control_rep2


title: veraison_night_control_rep2

source_name: veraison vitis vinifera berry, control, night sampled


title: 0852_2XAF

description: Biological Replicate 9 of 12; 2XAF


title: veraison_night_control_rep1


title: veraison_day_control_rep1


title: Liver_untreated_wild type_rep3

source_name: Liver, untreated, rep3

value: Male


title: veraison_night_control_rep3


title: veraison_day_treatment_rep1


title: green_night_treatment_rep3

source_name: green vitis vinifera berry, heat stress, night sampled

value: green


title: green_night_treatment_rep2


title: MK38_10

city: Frankfurt

first: Peter

last: Mombaerts

address: Max-von-Laue-Str. 3

country: Germany

institute: Max Planck Research Unit for Neurogenetics

description: Total RNA 1µg from individual mouse was hybridized at 65°C for 16-18 hours in each lane.

hyb_protocol: Total RNA 1µg per sample was hybridized with Capture and Reporter Codes at 65°C for 16 to 18 hours.

scan_protocol: Hybridized RNA transcripts were imaged at 1155 fields of view per sample and processed using the nCounter Digital Analyzer.

data_processing: First normalization is with respect to the geometric mean of the positive control spike counts. The second normalization is with respect to the geometric mean of the reference genes that were pre-selected by geNorm algorithm as the most suitable genes. Then a Background correction is done which consists of subtracting the mean + 2*SD (standard deviation) of the negative control counts. Count values  <1 were fixed to background level. Finally, we define a gene as informative if the median of the normalized NanoString counts in wild-type control mice is ≥100. Final normalized data are in the VALUE column.

label: NanoString capture/reporter probes

extract_protocol: Whole olfactory mucosa tissue was dissected out from the nasal cavity of a mouse and placed directly in RNAlater Reagent (Qiagen). Tissue was lysed in RNA Lysis Buffer using a TissueLyser LT (Qiagen). Total RNA was extracted according to protocol of RNeasy Mini kit (Qiagen). Genomic DNA digestion was performed using on-column RNase-Free DNaseI (Qiagen).

value: Whole olfactory mucosa

tag: strain name

tag: genotype

value: Homozygous

tag: background strain

value: 129SvEv - inbred

tag: age

value: 21 days

value: male


title: 0549_2XUF

description: Biological Replicate 7 of 10; 2XUF

tag: treatment


title: MK38_09

tag: Sex

value: female


title: green_night_treatment_rep1

value: Pinot meunier

value: GAI mutant (DRCF)

value: berry

value: heat stress

value: night


title: MK38_12


title: MK38_08


title: Liver_untreated_wild type_rep1

source_name: Liver, untreated, rep1

tag: strain


title: 5419_2XAF

description: Biological Replicate 6 of 12; 2XAF

tag: milking frequency

tag: feeding level


title: 0546_1XUF

description: Biological Replicate 7 of 11; 1XUF

source_name: Liver, 1XUF 3 weeks

value: 1X (once-daily)

value: UF (under-fed)


title: MK38_11

tag: tissue


title: 0251_1XAF

description: Biological Replicate 8 of 12; 1XAF

source_name: Liver, 1XAF 3 weeks

value: pooled 2X, 1X, AF, UF


title: 0729_1XAF

description: Biological Replicate 9 of 12; 1XAF

value: AF (adequately fed)


title: green_day_treatment_rep1

source_name: green vitis vinifera berry, heat stress, day sampled

tag: cultivar

value: day


title: green_night_control_rep3

source_name: green vitis vinifera berry, control, night sampled

tag: genotype/variation

value: green

value: control


title: green_day_treatment_rep2

tag: developmental stage


title: 4417_1XUF

description: Biological Replicate 6 of 11; 1XUF

source_name: pooled liver


title: green_night_control_rep2

tag: time


title: MK38_05

value: Whole olfactory mucosa

value: 129SvEvTac (Charles River Laboratories, Germany)

value: Wildtype


title: MK38_07

value: Homozygous

value: 129SvEv - inbred

value: 21 days


title: green_day_control_rep2

source_name: green vitis vinifera berry, control, day sampled

value: Pinot meunier

value: GAI mutant (DRCF)


title: green_day_control_rep3

value: berry


title: green_day_control_rep1


title: MK38_06

value: male


title: 0422_2XAF

description: Biological Replicate 7 of 12; 2XAF

value: 2X (twice-daily)


title: 0833_2XUF

description: Biological Replicate 6 of 10; 2XUF

value: UF (under-fed)


title: MK38_04

value: female


title: green_day_treatment_rep3

value: heat stress


title: MK38_03


title: MK38_02


title: QM9414_LL_C_2

city: Vienna

first: Monika

last: Schmoll

address: Djerassiplatz 1

department: Centre of Microbiology and Environmental Systems Science

country: Austria

institute: University of Vienna

description: SAMPLE 8

hyb_protocol: Hybridization was performed by NimbleGen Systems Inc., Madison, WI, USA following their standard operating protocol. See www.nimblegen.com.

scan_protocol: Scanning was performed by NimbleGen Systems Inc., Madison, WI USA, following their standard operating protocol. See www.nimblegen.com.

data_processing: The raw data (.pair file) was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249), quantile normalization (Bolstad et al. Bioinformatics 19(2):185), and background correction as implemented in the NimbleScan software package, version 2.4.27 (Roche NimbleGen, Inc.).

organism: Trichoderma reesei

source_name: QM9414 grown on cellulose in constant light

growth_protocol: Trichoderma reesei strains were grown in 1 l Erlenmeyer flasks on a rotary shaker (200 rpm) at 28°C in Mandels-Andreotti minimal medium with 1% microcrystalline cellulose as carbon source in constant light (LL) or constant darkness (DD) for 72 hours.

extract_protocol: Total RNA was extracted as described in Tisch et al., 2011 (New insights into the mechanism of light modulated signaling by heterotrimeric G-proteins: ENVOY acts on gna1 and gna3 and adjusts cAMP levels in Trichoderma reesei (Hypocrea jecorina). Fungal Genet Biol, 48 (6): 631 – 40) with supplies provided by the RNeasy Plant Mini Kit (QIAGEN, Hilden, Germany). The quality of the RNA was controlled with the Experion Automated Electrophoresis System (Bio-Rad, Hercules, USA). Total RNA was treated with DNase (Fermentas, Vilnius, Lithuania) and purified using the RNeasy Mini Kit (QIAGEN). cDNA synthesis was done with the RevertAid H- First Strand cDNA Synthesis Kit (Fermentas) and Oligo-d(T) Primer.

treatment_protocol: Mycelium was harvested under red-safety light when cultivated in darkness and frozen in liquid nitrogen.

value: parental strain

tag: carbon source

value: 1% w/v microcrystalline cellulose

tag: grown in

value: constant light (LL) for 72 hrs


title: MK37_06

value: Whole olfactory mucosa

value: ΔH (companion wildtype strain)

value: mixed C57BL/6J x 129SvEv


title: MK38_01

value: 129SvEvTac (Charles River Laboratories, Germany)

value: Wildtype


title: MK37_05

value: 21 days


title: MK37_04


title: QM9414_DD_C_2

description: SAMPLE 6

source_name: QM9414 grown on cellulose in constant darkness

value: constant darkness (DD) for 72 hrs


title: 0804_2XAF

description: Biological Replicate 5 of 12; 2XAF

value: AF (adequately fed)

value: pooled 2X, 1X, AF, UF


title: 0719_1XUF

description: Biological Replicate 5 of 11; 1XUF

value: 1X (once-daily)


title: 0731_2XUF

description: Biological Replicate 5 of 10; 2XUF

value: 2X (twice-daily)


title: QM9414_DD_C_1

description: SAMPLE 5


title: MK37_03


title: 3425_1XAF

description: Biological Replicate 7 of 12; 1XAF


title: MK37_02


title: acy_LL_C_2

description: SAMPLE 4

source_name: Δacy1 grown on cellulose in constant light

value: adenylate cyclase 1 deletion mutant


title: acy_LL_C_1

description: SAMPLE 3


title: acy_DD_C_2

description: SAMPLE 2

source_name: Δacy1 grown on cellulose in constant darkness


title: MK37_01

value: female


title: 0279_1XUF

description: Biological Replicate 4 of 11; 1XUF

value: UF (under-fed)


title: 0706_1XAF

description: Biological Replicate 6 of 12; 1XAF


title: 0529_2XUF

description: Biological Replicate 4 of 10; 2XUF

source_name: Liver, 2XUF 3 weeks


title: 0085_2XAF

description: Biological Replicate 4 of 12; 2XAF

source_name: Liver, 2XAF 3 weeks


title: acy_DD_C_1

description: SAMPLE 1


title: MK29_12

value: ΔP (Berry) x ΔH

value: Double homozygous

value: male


title: QM9414_LL_C_1

description: SAMPLE 7

value: parental strain

value: 1% w/v microcrystalline cellulose

value: constant light (LL) for 72 hrs


title: MK29_11

value: Whole olfactory mucosa

value: mixed C57BL/6J x 129SvEv


title: 3408_2XAF

description: Biological Replicate 3 of 12; 2XAF


title: 0204_1XAF

description: Biological Replicate 5 of 12; 1XAF


title: 0845_1XAF

description: Biological Replicate 4 of 12; 1XAF


title: 0864_1XUF

description: Biological Replicate 3 of 11; 1XUF


title: ripening_night_treatment_rep1

source_name: ripening vitis vinifera berry, heat stress, night sampled

value: Pinot meunier

value: GAI mutant (DRCF)

value: berry

value: ripening

value: heat stress

value: night


title: MK29_10

value: 21 days


title: MK29_09


title: Caulobacter_crescentus_wild_type_rep2 (Plac::CCNA_00382)

city: Lausanne

first: Diego

last: Gonzalez

address: Quartier UNIL-Sorge, Bâtiment Biophore

department: Department of Fundamental Microbiology

country: Switzerland

institute: University of Lausanne

description: Caulobacter crescentus, wild type, replicate 2

hyb_protocol: Hybridization was performed following the standard operating protocol of Nimblegen. See www.nimblegen.com.

scan_protocol: Scanning was performed on an Agilent High-Resolution Microarray scanner at 2 µm resolution.

data_processing: The raw data (.pair file) was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249), quantile normalization (Bolstad et al. Bioinformatics 19(2):185), and background correction as implemented in the NimbleScan software package (Roche NimbleGen, Inc.).

organism: Caulobacter vibrioides NA1000

source_name: Caulobacter crescentus, wild type

label_protocol: Labeling was performed following the standard operating protocol of Nimblegen. See www.nimblegen.com.

growth_protocol: Cells were cultivated at 28°C in minimal medium (M2G) and harvested in exponential phase (O.D.660nm 0.3).

extract_protocol: Total RNA was extracted using Trizol and the PureLink RNA kit (Invitrogen); a Dnase I treatment was performed before a second purification on PureLink columns. RNA quality and concentration was determined by analysis with a Bioanalyzer and a Nanodrop.

value: wild type


title: MK29_08


title: MK29_07


title: Caulobacter_crescentus_wild_type_rep3 (Plac::CCNA_00382)

description: Caulobacter crescentus, wild type, replicate 3


title: Caulobacter_crescentus_wild_type_rep1 (Plac::CCNA_00382)

description: Caulobacter crescentus, wild type, replicate 1


title: MK29_06

value: ΔP (Berry) x ΔH (companion wildtype strain)

value: Wildtype

value: female


title: Caulobacter_crescentus_Plac::CCNA_00382_rep3

description: Caulobacter crescentus, Plac::CCNA_00382 (ccrM), replicate 3

value: Plac::CCNA_00382 (ccrM)


title: MK29_04

value: male


title: MK29_05


title: Caulobacter_crescentus_Plac::CCNA_00382_rep2

description: Caulobacter crescentus, Plac::CCNA_00382 (ccrM), replicate 2


title: Caulobacter_crescentus_Plac::CCNA_00382_rep1

description: Caulobacter crescentus, Plac::CCNA_00382 (ccrM), replicate 1


title: 0743_2XUF

description: Biological Replicate 3 of 10; 2XUF

value: 2X (twice-daily)

value: UF (under-fed)

value: pooled 2X, 1X, AF, UF


title: 0687_2XAF

description: Biological Replicate 2 of 12; 2XAF

value: AF (adequately fed)


title: 0650_1XAF

description: Biological Replicate 3 of 12; 1XAF

value: 1X (once-daily)


title: Caulobacter_crescentus_wild_type_rep2


title: Caulobacter_crescentus_wild_type_rep3


title: 0625_1XUF

description: Biological Replicate 2 of 11; 1XUF


title: MK29_02

value: Whole olfactory mucosa

value: mixed C57BL/6J x 129SvEv


title: 0203_1XUF

description: Biological Replicate 1 of 11; 1XUF


title: MK29_03


title: 0047_1XAF

description: Biological Replicate 2 of 12; 1XAF


title: Caulobacter_crescentus_wild_type_rep1


title: MK29_01


title: 0024_2XUF

description: Biological Replicate 1 of 10; 2XUF


title: Caulobacter_crescentus_DccrM_rep2

description: Caulobacter crescentus, delta_CCNA_00382 (ccrM), replicate 2

value: delta-CCNA_00382 (ccrM)


title: Caulobacter_crescentus_DccrM_rep3

description: Caulobacter crescentus, delta_CCNA_00382 (ccrM), replicate 3


title: Caulobacter_crescentus_DccrM_rep1

description: Caulobacter crescentus, delta_CCNA_00382 (ccrM), replicate 1


title: 0701_2XUF

description: Biological Replicate 2 of 10; 2XUF


title: 0019_2XAF

description: Biological Replicate 1 of 12; 2XAF


title: BoneMarrow_28DayPlusRestExposed_Rep1 [Agilent]

status: Public on Jan 07 2014

city: Chapel Hill

first: Rebecca

middle: Catherine

last: Fry

address: 1213 MHRC

department: Environmental Sciences and Engineering

institute: UNC-Chapel Hill

description: normalized and batch effect-removed miRNA expression levels from bone marrow cells from rat exposed to 2 ppm formaldehyde for 28 days then rested, unexposed for 7 days

hyb_protocol: Following fragmentation, cRNA was hybridized on Agilent Rat miRNA Microarray, as based off miRBase v16.0

scan_protocol: Microarrays were scanned using Agilent Microarray Scanner

data_processing: Data were normalized by quantile using Partek® Genomics SuiteTM software (version 6.5)

label: Cyanine 3

organism: Rattus norvegicus

source_name: Bone marrow cells, 28 day plus rest, exposed

label_protocol: Labeled cRNA were prepared according to the standard Agilent protocol

growth_protocol: Male Fischer rats were selected from the Lovelace Respiratory Research Institute colony. Animals were approximately six to eight weeks of age and weighed between 150 and 250 grams. Animals were housed up to two per cage in approved housing chambers with hardwood chip bedding. Caging and bedding was changed two times per week. The animal room environment was maintained at 18-26°C and 30-70% humidity with a 12 hour light-dark cycle. Animals were provided unlimited access to food and municipal water except during conditioning and inhalation exposure periods. After a two week quarantine period, animals were conditioned to nose-only exposure tubes for 6.5 hours/day over four conditioning sessions.

extract_protocol: After the last exposure period (or the last recovery period for the 28-day plus recovery group), animals were euthanized using an intraperitoneal injection of pentobarbital-based euthanasia solution. To collect nasal epithelial tissue, the rat skull was split with a slight bias to one side (to preserve septal mucosa) and tissue from the maxilloturbinate was collected and stored in RNAlater®. Whole blood was collected by cardiac stick using a heparin-laced syringe, and WBC were isolated using Vacutainer® CPT™ cell preparation tubes and stored in TRIzol LS . To collect BM cells, femurs were flushed with saline and BM cells stored in RNAlater® (Qiagen). All samples were stored at -80°C until further processing. Tissue samples were disrupted using the TissueRuptor, and RNAs were isolated using the RNAeasy mini kit.

treatment_protocol: Rats received nose-only inhalation exposures of 2 ppm formaldehyde. Three exposure durations were investigated: (1) 2 ppm formaldehyde exposure, 6 hours/day, for 7 days (7-day group), (2) 2 ppm formaldehyde exposure, 6 hours/day, for 28 days (28-day group), and (3) 2 ppm formaldehyde exposure, 6 hours/day, for 28 days, with a 7 day recovery period following the last exposure (28-day plus recovery group). Control (unexposed) rats were placed in nose-only exposure tubes containing room air for the same duration. Exposure conditions were created by vaporizing [13CD2]-paraformaldehyde.

tag: cell

value: Bone marrow cells

tag: time point

value: 28 day plus rest

tag: agent

value: vaporizing [13CD2]-paraformaldehyde

value: Fischer

tag: gender

value: approximately 6 to 8 weeks of age at beginning of study


title: BoneMarrow_28DayPlusRestExposed_Rep2 [Agilent]

tag: age


title: BoneMarrow_28DayPlusRestExposed_Rep3 [Agilent]


title: BoneMarrow_28DayPlusRestControl_Rep3 [Agilent]

description: normalized and batch effect-removied miRNA expression levels from bone marrow cells from rat control, 28 day exposure plus 7 days of rest group

source_name: Bone marrow cells, 28 day plus rest, unexposed


title: BoneMarrow_28DayControl_Rep3 [Agilent]

description: normalized miRNA expression levels from bone marrow cells from rat control, 28 day exposure group

source_name: Bone marrow cells, 28 day, unexposed

value: 28 day


title: BoneMarrow_28DayExposed_Rep3 [Agilent]

description: normalized miRNA expression levels from bone marrow cells from rat exposed to 2 ppm formaldehyde for 28 days

source_name: Bone marrow cells, 28 day, exposed


title: 4514_1XAF

description: Biological Replicate 1 of 12; 1XAF

source_name: Liver, 1XAF 3 weeks

tag: treatment


title: BoneMarrow_28DayExposed_Rep2 [Agilent]


title: BoneMarrow_28DayExposed_Rep1 [Agilent]


title: BoneMarrow_28DayPlusRestControl_Rep1 [Agilent]


title: BoneMarrow_28DayControl_Rep2 [Agilent]


title: BoneMarrow_28DayPlusRestControl_Rep2 [Agilent]


title: BoneMarrow_7DayExposed_Rep3 [Agilent]

description: normalized miRNA expression levels from bone marrow cells from rat exposed to 2 ppm formaldehyde for 7 days

source_name: Bone marrow cells, 7 day, exposed

value: 7 day


title: BoneMarrow_7DayControl_Rep1 [Agilent]

description: normalized miRNA expression levels from bone marrow cells from rat control, 7 day exposure group

source_name: Bone marrow cells, 7 day, unexposed


title: WhiteBloodCells_28DayPlusRestExposed_Rep4 [Agilent]

description: normalized miRNA expression levels from white blood cells from rat exposed to 2 ppm formaldehyde for 28 days then rested, unexposed for 7 days

source_name: Circulating mononuclear white blood cells, 28 day plus rest, exposed


title: BoneMarrow_7DayExposed_Rep1 [Agilent]


title: BoneMarrow_7DayExposed_Rep2 [Agilent]


title: BoneMarrow_7DayControl_Rep2 [Agilent]


title: WhiteBloodCells_7DayExposed_Rep1 [Agilent]

description: normalized miRNA expression levels from white blood cells from rat exposed to 2 ppm formaldehyde for 7 days

source_name: Circulating mononuclear white blood cells, 7 day, exposed


title: WhiteBloodCells_7DayControl_Rep3 [Agilent]

description: normalized miRNA expression levels from white blood cells from rat control, 7 day exposure group

source_name: Circulating mononuclear white blood cells, 7 day, unexposed


title: WhiteBloodCells_28DayControl_Rep2 [Agilent]

description: normalized miRNA expression levels from white blood cells from rat control, 28 day exposure group

source_name: Circulating mononuclear white blood cells, 28 day, unexposed


title: WhiteBloodCells_28DayPlusRestControl_Rep1 [Agilent]

description: normalized miRNA expression levels from white blood cells from rat control, 28 day exposure plus 7 days of rest group

source_name: Circulating mononuclear white blood cells, 28 day plus rest, unexposed


title: WhiteBloodCells_28DayPlusRestExposed_Rep3 [Agilent]

value: Circulating mononuclear white blood cells


title: BoneMarrow_28DayControl_Rep1 [Agilent]

value: male


title: WhiteBloodCells_28DayExposed_Rep4 [Agilent]

description: normalized miRNA expression levels from white blood cells from rat exposed to 2 ppm formaldehyde for 28 days

source_name: Circulating mononuclear white blood cells, 28 day, exposed


title: WhiteBloodCells_7DayExposed_Rep4 [Agilent]


title: BoneMarrow_7DayControl_Rep3 [Agilent]


title: WhiteBloodCells_28DayControl_Rep3 [Agilent]


title: green_night_control_rep1

source_name: green vitis vinifera berry, control, night sampled

value: Pinot meunier

value: GAI mutant (DRCF)

value: berry

value: green

value: control

value: night


title: WhiteBloodCells_28DayPlusRestControl_Rep2 [Agilent]


title: WhiteBloodCells_28DayControl_Rep1 [Agilent]


title: WhiteBloodCells_28DayExposed_Rep1 [Agilent]


title: WhiteBloodCells_7DayExposed_Rep2 [Agilent]


title: WhiteBloodCells_7DayExposed_Rep3 [Agilent]


title: WhiteBloodCells_28DayPlusRestControl_Rep3 [Agilent]


title: WhiteBloodCells_28DayPlusRestExposed_Rep2 [Agilent]


title: WhiteBloodCells_7DayControl_Rep2 [Agilent]


title: WhiteBloodCells_28DayExposed_Rep3 [Agilent]


title: WhiteBloodCells_28DayExposed_Rep2 [Agilent]


title: Nose_28DayPlusRestExposed_Rep3 [Agilent]

description: normalized miRNA expression levels from nasal epithelium from rat exposed to 2 ppm formaldehyde for 28 days then rested, unexposed for 7 days

source_name: Nasal epithelial cells, 28 day plus rest, exposed

value: Nasal epithelial cells


title: WhiteBloodCells_28DayPlusRestExposed_Rep1 [Agilent]


title: WhiteBloodCells_7DayControl_Rep1 [Agilent]


title: Nose_7DayControl_Rep3 [Agilent]

description: normalized miRNA expression levels from nasal epithelium from rat control, 7 day exposure group

source_name: Nasal epithelial cells, 7 day, unexposed


title: Nose_28DayExposed_Rep2 [Agilent]

description: normalized and batch effect-removed miRNA expression levels from nasal epithelium from rat exposed to 2 ppm formaldehyde for 28 days

source_name: Nasal epithelial cells, 28 day, exposed


title: Nose_7DayExposed_Rep2 [Agilent]

description: normalized miRNA expression levels from nasal epithelium from rat exposed to 2 ppm formaldehyde for 7 days

source_name: Nasal epithelial cells, 7 day, exposed


title: Nose_7DayControl_Rep1 [Agilent]


title: Nose_28DayExposed_Rep3 [Agilent]


title: Nose_7DayExposed_Rep1 [Agilent]


title: Nose_7DayExposed_Rep3 [Agilent]


title: Nose_28DayExposed_Rep1 [Agilent]


title: Nose_28DayPlusRestExposed_Rep2 [Agilent]


title: Nose_7DayControl_Rep2 [Agilent]


title: Nose_28DayPlusRestControl_Rep2 [Agilent]

description: normalized miRNA expression levels from nasal epithelium from rat control, 28 day exposure plus 7 days of rest group

source_name: Nasal epithelial cells, 28 day plus rest, unexposed


title: Nose_28DayPlusRestControl_Rep3 [Agilent]


title: Nose_28DayControl_Rep1 [Agilent]

description: normalized and batch effect-removed miRNA expression levels from nasal epithelium from rat control, 28 day exposure group

source_name: Nasal epithelial cells, 28 day, unexposed


title: Nose_28DayControl_Rep2 [Agilent]


title: Nose_28DayControl_Rep3 [Agilent]


title: WhiteBloodCells_28DayExposed_Rep2 [Affymetrix]

description: normalized gene expression levels from white blood cells from rat exposed to 2 ppm formaldehyde for 28 days

hyb_protocol: Following fragmentation, cRNA was hybridized on Affymetrix Rat Gene 1.0 ST Array

scan_protocol: Microarrays were scanned using Affymetrix Microarray Scanner

data_processing: Data were normalized by robust multi-chip averaging using Partek® Genomics SuiteTM software (version 6.5)

source_name: Circulating white blood cells, 28 day, exposed

label_protocol: Labeled cRNA were prepared according to the standard Affymetrix protocol

extract_protocol: After the last exposure period, animals were euthanized using an intraperitoneal injection of pentobarbital-based euthanasia solution. To collect nasal epithelial tissue, the rat skull was split with a slight bias to one side (to preserve septal mucosa) and tissue from the maxilloturbinate was collected and stored in RNAlater®. Whole blood was collected by cardiac stick using a heparin-laced syringe, and WBC were isolated using Vacutainer® CPT™ cell preparation tubes and stored in TRIzol LS . All samples were stored at -80°C until further processing. Nasal tissue samples were disrupted using the TissueRuptor, and RNAs were isolated using the RNAeasy mini kit.

treatment_protocol: Rats received nose-only inhalation exposures of 2 ppm formaldehyde, 6 hours/day, for 7 days (7-day group) or 28 days (28-day group). Control (unexposed) rats were placed in nose-only exposure tubes containing room air for the same duration. Exposure conditions were created by vaporizing [13CD2]-paraformaldehyde.

value: approximately 8 wk at beginning of study

tag: cell type

value: Circulating white blood cells

value: 2 ppm formaldehyde

value: Fishcer


title: Nose_28DayPlusRestExposed_Rep1 [Agilent]

value: 28 day plus rest

value: vaporizing [13CD2]-paraformaldehyde

tag: strain

value: Fischer


title: WhiteBloodCells_28DayExposed_Rep3 [Affymetrix]

value: 28 day


title: Nose_28DayPlusRestControl_Rep1 [Agilent]

value: approximately 6 to 8 weeks of age at beginning of study


title: Nose_28DayExposed_Rep1 [Affymetrix]

description: normalized gene expression levels from nasal epithelium from rat exposed to 2 ppm formaldehyde for 28 days

value: male


title: Nose_28DayExposed_Rep2 [Affymetrix]


title: WhiteBloodCells_28DayControl_Rep3 [Affymetrix]

description: normalized gene expression levels from white blood cells from rat control, 28 day exposure group

source_name: Circulating white blood cells, 28 day, unexposed

value: unexposed


title: Nose_28DayExposed_Rep3 [Affymetrix]


title: WhiteBloodCells_28DayControl_Rep1 [Affymetrix]


title: WhiteBloodCells_28DayExposed_Rep1 [Affymetrix]


title: WhiteBloodCells_28DayControl_Rep2 [Affymetrix]


title: HUVECs Lonza batch R

city: Basel

first: Tobias

last: Heckel

address: Grenzacherstr. 124

department: pRED

institute: Roche

description:
This sample is of HUVEC. It is the third of three wild-type biological replicates used in this experiment, each from separate cultures.
SAMPLE 3

hyb_protocol: Hybridization was performed following the standard operating protocol of NimbleGen Systems Inc., Madison, WI USA. See www.nimblegen.com.

scan_protocol: Scanning was performed following the standard operating protocol of NimbleGen Systems Inc., Madison, WI USA. See www.nimblegen.com.

data_processing: The raw data (.pair file) was subjected to background correction, quantile normalization (Bolstad et al. Bioinformatics 19(2):185), and RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249) as implemented in the NimbleScan software package, version 2.6 (Roche NimbleGen, Inc.).

source_name: Normal -(HUVEC) Human Umbilical Vein Endothelial Cells (batch R: RNCB CL00577)

label_protocol: Labeling was performed using 5 ug of total RNA input following the standard operating protocol of NimbleGen Systems Inc., Madison, WI USA. See www.nimblegen.com.

growth_protocol: HUVEC cells were cultured at 37°C, 5% CO2 and 95% humidity in EGM2 medium (Lonza) until they reached a confluency of maximal 80%.

extract_protocol: Total RNA was extracted using the RNeasy Mini kit (Qiagen Inc., Valencia, CA, USA) . DNA was removed by on-column DNase digestion with the RNase-Free DNase set (Qiagen). RNA quality and concentration was determined by analysis with an Agilent 2100 bioanalyzer (Agilent Technologies Inc., Santa Clara, CA, USA).

treatment_protocol: cells were flash frozen and stored at -80°C until RNA extraction

value: HUVEC

tag: phenotype

value: normal

tag: medium

value: EGM2 medium (Lonza)

tag: batch

value: R


title: HUVECs Lonza batch A

description:
This sample is of HUVEC. It is the first of three wild-type biological replicates used in this experiment, each from separate cultures.
SAMPLE 1

source_name: Normal -(HUVEC) Human Umbilical Vein Endothelial Cells (batch A: AE)

value: A


title: WhiteBloodCells_7DayExposed_Rep3 [Affymetrix]

description: normalized gene expression levels from white blood cells from rat exposed to 2 ppm formaldehyde for 7 days

source_name: Circulating white blood cells, 7 day, exposed

value: 7 day


title: Nose_28DayControl_Rep3 [Affymetrix]

description: normalized gene expression levels from nasal epithelium from rat control, 28 day exposure group

value: approximately 8 wk at beginning of study

value: Nasal epithelial cells


title: Nose_28DayControl_Rep1 [Affymetrix]


title: WhiteBloodCells_7DayControl_Rep3 [Affymetrix]

description: normalized gene expression levels from white blood cells from rat control, 7 day exposure group

source_name: Circulating white blood cells, 7 day, unexposed

value: Circulating white blood cells


title: HUVECs Lonza batch C

description:
This sample is of HUVEC. It is the second of three wild-type biological replicates used in this experiment, each from separate cultures.
SAMPLE 2

source_name: Normal -(HUVEC) Human Umbilical Vein Endothelial Cells (batch C: AE_C)

value: C


title: WhiteBloodCells_7DayControl_Rep2 [Affymetrix]

value: Fishcer


title: WhiteBloodCells_7DayExposed_Rep1 [Affymetrix]

value: 2 ppm formaldehyde


title: Nose_7DayControl_Rep3 [Affymetrix]

description: normalized gene expression levels from nasal epithelium from rat control, 7 day exposure group


title: Nose_7DayExposed_Rep2 [Affymetrix]

description: normalized gene expression levels from nasal epithelium from rat exposed to 2 ppm formaldehyde for 7 days


title: Nose_7DayExposed_Rep3 [Affymetrix]


title: Nose_28DayControl_Rep2 [Affymetrix]


title: WhiteBloodCells_7DayControl_Rep1 [Affymetrix]


title: Nose_7DayExposed_Rep1 [Affymetrix]


title: Nose_7DayControl_Rep2 [Affymetrix]


title: Nose_7DayControl_Rep1 [Affymetrix]


title: WhiteBloodCells_7DayExposed_Rep2 [Affymetrix]


title: ADN227.2

type: genomic

city: BARCELONA

first: Lluis

last: Armengol

state: Catalonia

address: Doctor Aiguader, 88

country: Spain

institute: qGenomics

description: biological sample used as control/testing purposes in the study.

hyb_protocol: Hybridisation was performed as described in Wang. NJ. et al, Am. J. Hum. Genet, 75(2), 267-81, 2004.

scan_protocol: Agilent Microarray Scanner (G2565CA - Agilent Inc., Palo Alto, CA). Images were extracted with Genepix Pro 6.0 (Axon, Inc) using the irregular spot finding features with default flagging settings.

data_processing: In order to extract information from the GenePix generated files, we used an in-house developed pipeline called Bacanal (Lozano et al, unpublished). For lowess normalization of spot signals it relies on a bioconductor package called LIMMA. Values provided correspond to the log2 Cy5/Cy3 (test/reference) ratios.

molecule: genomic DNA

source_name: Total DNA from sample ADN227.2 labeled with Cyanine-5 (red).

label_protocol: Between 300 and 400ng of total genomic DNA were labeled using Cy5-modified dCTP by random priming method, according to a slightly modified Bioprime Kit protocol (Invitrogen). Absorbance measures at 532 and 650nm. determined the amounts of dye incorporated to the DNA.

extract_protocol: QIAamp DNA Mini Kit

tag: tissue

value: Amniotic Fluid

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).

label_protocol: Between 300 and 400ng of total genomic DNA were labeled using Cy3-modified dCTP by random priming method, according to a slightly modified Bioprime Kit protocol (Invitrogen). Absorbance measures at 532 and 650nm. after removing unincorporated dye determined the amount of dye incorporation.

extract_protocol: Chemagen magnetic beads. Chemagic DNA Blood Kit special (cat. num 703, Chemagen)

value: fresh peripheral blood


title: ADN273

source_name: Total DNA from sample ADN273 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: ADN272

source_name: Total DNA from sample ADN272 labeled with Cyanine-5 (red).


title: ADN223.2

source_name: Total DNA from sample ADN223.2 labeled with Cyanine-5 (red).


title: ADN225.2

source_name: Total DNA from sample ADN225.2 labeled with Cyanine-5 (red).


title: ADN266

source_name: Total DNA from sample ADN266 labeled with Cyanine-5 (red).


title: ADN271

source_name: Total DNA from sample ADN271 labeled with Cyanine-5 (red).


title: ADN269

source_name: Total DNA from sample ADN269 labeled with Cyanine-5 (red).


title: ADN261

source_name: Total DNA from sample ADN261 labeled with Cyanine-5 (red).


title: 5306

source_name: Total DNA from sample 5306 labeled with Cyanine-5 (red).


title: ADN270

source_name: Total DNA from sample ADN270 labeled with Cyanine-5 (red).


title: ADN215.2

source_name: Total DNA from sample ADN215.2 labeled with Cyanine-5 (red).


title: ADN265

source_name: Total DNA from sample ADN265 labeled with Cyanine-5 (red).


title: Y306666

source_name: Total DNA from sample Y306666 labeled with Cyanine-5 (red).


title: ADN217.2

source_name: Total DNA from sample ADN217.2 labeled with Cyanine-5 (red).


title: ADN216.2

source_name: Total DNA from sample ADN216.2 labeled with Cyanine-5 (red).


title: 469.02P

source_name: Total DNA from sample 469.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: 468.02P

source_name: Total DNA from sample 468.02P labeled with Cyanine-5 (red).


title: 466.02P

source_name: Total DNA from sample 466.02P labeled with Cyanine-5 (red).


title: 467.02P

source_name: Total DNA from sample 467.02P labeled with Cyanine-5 (red).


title: 472.02P

source_name: Total DNA from sample 472.02P labeled with Cyanine-5 (red).


title: 463.02P

source_name: Total DNA from sample 463.02P labeled with Cyanine-5 (red).


title: 470.02P

source_name: Total DNA from sample 470.02P labeled with Cyanine-5 (red).


title: 273.02P

source_name: Total DNA from sample 273.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: 471.02P

source_name: Total DNA from sample 471.02P labeled with Cyanine-5 (red).


title: 462.02P

source_name: Total DNA from sample 462.02P labeled with Cyanine-5 (red).


title: 464.02P

source_name: Total DNA from sample 464.02P labeled with Cyanine-5 (red).


title: 441.02P

source_name: Total DNA from sample 441.02P labeled with Cyanine-5 (red).


title: 274.02P

source_name: Total DNA from sample 274.02P labeled with Cyanine-5 (red).


title: 326P

source_name: Total DNA from sample 326P labeled with Cyanine-5 (red).


title: 263.02P

source_name: Total DNA from sample 263.02P labeled with Cyanine-5 (red).


title: 319P

source_name: Total DNA from sample 319P labeled with Cyanine-5 (red).


title: 264.02P

source_name: Total DNA from sample 264.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: 267.02P

source_name: Total DNA from sample 267.02P labeled with Cyanine-5 (red).


title: 271.02P

source_name: Total DNA from sample 271.02P labeled with Cyanine-5 (red).


title: 238.02P

source_name: Total DNA from sample 238.02P labeled with Cyanine-5 (red).


title: 261.02P

source_name: Total DNA from sample 261.02P labeled with Cyanine-5 (red).


title: 255.02P

source_name: Total DNA from sample 255.02P labeled with Cyanine-5 (red).


title: 233.02P

source_name: Total DNA from sample 233.02P labeled with Cyanine-5 (red).


title: 269.02P

source_name: Total DNA from sample 269.02P labeled with Cyanine-5 (red).


title: 237.02P

source_name: Total DNA from sample 237.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: 257.02P

source_name: Total DNA from sample 257.02P labeled with Cyanine-5 (red).


title: 259.02P

source_name: Total DNA from sample 259.02P labeled with Cyanine-5 (red).


title: 262.02P

source_name: Total DNA from sample 262.02P labeled with Cyanine-5 (red).


title: 272.02P

source_name: Total DNA from sample 272.02P labeled with Cyanine-5 (red).


title: 236.02P

source_name: Total DNA from sample 236.02P labeled with Cyanine-5 (red).


title: 220.02P

source_name: Total DNA from sample 220.02P labeled with Cyanine-5 (red).


title: 239.02P

source_name: Total DNA from sample 239.02P labeled with Cyanine-5 (red).


title: ADN97

source_name: Total DNA from sample ADN97 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN102

source_name: Total DNA from sample ADN102 labeled with Cyanine-5 (red).


title: ADN101

source_name: Total DNA from sample ADN101 labeled with Cyanine-5 (red).


title: 235.02P

source_name: Total DNA from sample 235.02P labeled with Cyanine-5 (red).


title: ADN95

source_name: Total DNA from sample ADN95 labeled with Cyanine-5 (red).


title: ADN93

source_name: Total DNA from sample ADN93 labeled with Cyanine-5 (red).


title: ADN186.2

source_name: Total DNA from sample ADN186.2 labeled with Cyanine-5 (red).


title: ADN92

source_name: Total DNA from sample ADN92 labeled with Cyanine-5 (red).


title: ADN237

source_name: Total DNA from sample ADN237 labeled with Cyanine-5 (red).


title: ADN59.2

source_name: Total DNA from sample ADN59.2 labeled with Cyanine-5 (red).


title: 206P

source_name: Total DNA from sample 206P labeled with Cyanine-5 (red).


title: 202P

source_name: Total DNA from sample 202P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: 203P

source_name: Total DNA from sample 203P labeled with Cyanine-5 (red).


title: 201P

source_name: Total DNA from sample 201P labeled with Cyanine-5 (red).


title: 205P

source_name: Total DNA from sample 205P labeled with Cyanine-5 (red).


title: ADN91

source_name: Total DNA from sample ADN91 labeled with Cyanine-5 (red).


title: ADN66.2

source_name: Total DNA from sample ADN66.2 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN340

source_name: Total DNA from sample ADN340 labeled with Cyanine-5 (red).


title: ADN341

source_name: Total DNA from sample ADN341 labeled with Cyanine-5 (red).


title: ADN332

source_name: Total DNA from sample ADN332 labeled with Cyanine-5 (red).


title: ADN295.2

source_name: Total DNA from sample ADN295.2 labeled with Cyanine-5 (red).


title: ADN342c

source_name: Total DNA from sample ADN342c labeled with Cyanine-5 (red).


title: ADN105

source_name: Total DNA from sample ADN105 labeled with Cyanine-5 (red).


title: 2702871

source_name: Total DNA from sample 2702871 labeled with Cyanine-5 (red).


title: 492P

source_name: Total DNA from sample 492P labeled with Cyanine-5 (red).


title: ADN334

source_name: Total DNA from sample ADN334 labeled with Cyanine-5 (red).


title: ADN289c

source_name: Total DNA from sample ADN289c labeled with Cyanine-5 (red).


title: ADN58.2

source_name: Total DNA from sample ADN58.2 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: ADN353

source_name: Total DNA from sample ADN353 labeled with Cyanine-5 (red).


title: 490P

source_name: Total DNA from sample 490P labeled with Cyanine-5 (red).


title: 457.02P

source_name: Total DNA from sample 457.02P labeled with Cyanine-5 (red).


title: ADN339

source_name: Total DNA from sample ADN339 labeled with Cyanine-5 (red).


title: ADN337

source_name: Total DNA from sample ADN337 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN298.2

source_name: Total DNA from sample ADN298.2 labeled with Cyanine-5 (red).


title: 454.02P

source_name: Total DNA from sample 454.02P labeled with Cyanine-5 (red).


title: ADN329

source_name: Total DNA from sample ADN329 labeled with Cyanine-5 (red).


title: 456.02P

source_name: Total DNA from sample 456.02P labeled with Cyanine-5 (red).


title: 452.02P

source_name: Total DNA from sample 452.02P labeled with Cyanine-5 (red).


title: 494P

source_name: Total DNA from sample 494P labeled with Cyanine-5 (red).


title: 451.02P

source_name: Total DNA from sample 451.02P labeled with Cyanine-5 (red).


title: 449.02P

source_name: Total DNA from sample 449.02P labeled with Cyanine-5 (red).


title: 444.02P

source_name: Total DNA from sample 444.02P labeled with Cyanine-5 (red).


title: 446.02P

source_name: Total DNA from sample 446.02P labeled with Cyanine-5 (red).


title: 448.02P

source_name: Total DNA from sample 448.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: 440.02P

source_name: Total DNA from sample 440.02P labeled with Cyanine-5 (red).


title: 432.02P

source_name: Total DNA from sample 432.02P labeled with Cyanine-5 (red).


title: 439.02P

source_name: Total DNA from sample 439.02P labeled with Cyanine-5 (red).


title: ADN86.2

source_name: Total DNA from sample ADN86.2 labeled with Cyanine-5 (red).


title: ADN87.2

source_name: Total DNA from sample ADN87.2 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN89.2

source_name: Total DNA from sample ADN89.2 labeled with Cyanine-5 (red).


title: ADN133

source_name: Total DNA from sample ADN133 labeled with Cyanine-5 (red).


title: ADN136

source_name: Total DNA from sample ADN136 labeled with Cyanine-5 (red).


title: ADN85.2

source_name: Total DNA from sample ADN85.2 labeled with Cyanine-5 (red).


title: ADN143

source_name: Total DNA from sample ADN143 labeled with Cyanine-5 (red).


title: ADN84.2

source_name: Total DNA from sample ADN84.2 labeled with Cyanine-5 (red).


title: ADN83.2

source_name: Total DNA from sample ADN83.2 labeled with Cyanine-5 (red).


title: ADN81.2

source_name: Total DNA from sample ADN81.2 labeled with Cyanine-5 (red).


title: ADN144

source_name: Total DNA from sample ADN144 labeled with Cyanine-5 (red).


title: ADN135c

source_name: Total DNA from sample ADN135c labeled with Cyanine-5 (red).


title: ADN77.2

source_name: Total DNA from sample ADN77.2 labeled with Cyanine-5 (red).


title: ADN1200

source_name: Total DNA from sample ADN1200 labeled with Cyanine-5 (red).


title: ADN134

source_name: Total DNA from sample ADN134 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: ADN1185

source_name: Total DNA from sample ADN1185 labeled with Cyanine-5 (red).


title: ADN1201

source_name: Total DNA from sample ADN1201 labeled with Cyanine-5 (red).


title: ADN1169

source_name: Total DNA from sample ADN1169 labeled with Cyanine-5 (red).


title: ADN1136

source_name: Total DNA from sample ADN1136 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN82.2

source_name: Total DNA from sample ADN82.2 labeled with Cyanine-5 (red).


title: ADN1168

source_name: Total DNA from sample ADN1168 labeled with Cyanine-5 (red).


title: ADN1146

source_name: Total DNA from sample ADN1146 labeled with Cyanine-5 (red).


title: ADN1167

source_name: Total DNA from sample ADN1167 labeled with Cyanine-5 (red).


title: ADN1148

source_name: Total DNA from sample ADN1148 labeled with Cyanine-5 (red).


title: ADN1147

source_name: Total DNA from sample ADN1147 labeled with Cyanine-5 (red).


title: ADN1080

source_name: Total DNA from sample ADN1080 labeled with Cyanine-5 (red).


title: ADN1031

source_name: Total DNA from sample ADN1031 labeled with Cyanine-5 (red).


title: ADN1199

source_name: Total DNA from sample ADN1199 labeled with Cyanine-5 (red).


title: ADN1113

source_name: Total DNA from sample ADN1113 labeled with Cyanine-5 (red).


title: ADN1067

source_name: Total DNA from sample ADN1067 labeled with Cyanine-5 (red).


title: ADN1064

source_name: Total DNA from sample ADN1064 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: ADN9

source_name: Total DNA from sample ADN9 labeled with Cyanine-5 (red).


title: ADN1065

source_name: Total DNA from sample ADN1065 labeled with Cyanine-5 (red).


title: ADN1066

source_name: Total DNA from sample ADN1066 labeled with Cyanine-5 (red).


title: ADN14

source_name: Total DNA from sample ADN14 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN10

source_name: Total DNA from sample ADN10 labeled with Cyanine-5 (red).


title: ADN8

source_name: Total DNA from sample ADN8 labeled with Cyanine-5 (red).


title: ADN1024

source_name: Total DNA from sample ADN1024 labeled with Cyanine-5 (red).


title: ADN3

source_name: Total DNA from sample ADN3 labeled with Cyanine-5 (red).


title: ADN11

source_name: Total DNA from sample ADN11 labeled with Cyanine-5 (red).


title: ADN2

source_name: Total DNA from sample ADN2 labeled with Cyanine-5 (red).


title: ADN7

source_name: Total DNA from sample ADN7 labeled with Cyanine-5 (red).


title: ADN1

source_name: Total DNA from sample ADN1 labeled with Cyanine-5 (red).


title: ADN1462

source_name: Total DNA from sample ADN1462 labeled with Cyanine-5 (red).


title: ADN1021

source_name: Total DNA from sample ADN1021 labeled with Cyanine-5 (red).


title: ADN1459

source_name: Total DNA from sample ADN1459 labeled with Cyanine-5 (red).


title: ADN1401

source_name: Total DNA from sample ADN1401 labeled with Cyanine-5 (red).


title: ADN12

source_name: Total DNA from sample ADN12 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: ADN1412

source_name: Total DNA from sample ADN1412 labeled with Cyanine-5 (red).


title: ADN1460

source_name: Total DNA from sample ADN1460 labeled with Cyanine-5 (red).


title: ADN1322

source_name: Total DNA from sample ADN1322 labeled with Cyanine-5 (red).


title: 214P

source_name: Total DNA from sample 214P labeled with Cyanine-5 (red).


title: 213P

source_name: Total DNA from sample 213P labeled with Cyanine-5 (red).


title: ADN1202

source_name: Total DNA from sample ADN1202 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN1295

source_name: Total DNA from sample ADN1295 labeled with Cyanine-5 (red).


title: ADN1293

source_name: Total DNA from sample ADN1293 labeled with Cyanine-5 (red).


title: ADN6

source_name: Total DNA from sample ADN6 labeled with Cyanine-5 (red).


title: ADN1289

source_name: Total DNA from sample ADN1289 labeled with Cyanine-5 (red).


title: 209P

source_name: Total DNA from sample 209P labeled with Cyanine-5 (red).


title: ADN291c

source_name: Total DNA from sample ADN291c labeled with Cyanine-5 (red).


title: 215P

source_name: Total DNA from sample 215P labeled with Cyanine-5 (red).


title: ADN243.2

source_name: Total DNA from sample ADN243.2 labeled with Cyanine-5 (red).


title: ADN1299

source_name: Total DNA from sample ADN1299 labeled with Cyanine-5 (red).


title: 210P

source_name: Total DNA from sample 210P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: ADN103-P

source_name: Total DNA from sample ADN103-P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample ADN103-M labeled with Cyanine-3 (green).


title: ADN140.2

source_name: Total DNA from sample ADN140.2 labeled with Cyanine-5 (red).


title: ADN290

source_name: Total DNA from sample ADN290 labeled with Cyanine-5 (red).


title: ADN293

source_name: Total DNA from sample ADN293 labeled with Cyanine-5 (red).


title: ADN141.2

source_name: Total DNA from sample ADN141.2 labeled with Cyanine-5 (red).


title: ADN139.2

source_name: Total DNA from sample ADN139.2 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: 212P

source_name: Total DNA from sample 212P labeled with Cyanine-5 (red).


title: ADN13

source_name: Total DNA from sample ADN13 labeled with Cyanine-5 (red).


title: ADN138.2

source_name: Total DNA from sample ADN138.2 labeled with Cyanine-5 (red).


title: ADN238.2

source_name: Total DNA from sample ADN238.2 labeled with Cyanine-5 (red).


title: 216P

source_name: Total DNA from sample 216P labeled with Cyanine-5 (red).


title: ADN137.2

source_name: Total DNA from sample ADN137.2 labeled with Cyanine-5 (red).


title: ADN287

source_name: Total DNA from sample ADN287 labeled with Cyanine-5 (red).


title: 310P

source_name: Total DNA from sample 310P labeled with Cyanine-5 (red).


title: 296P

source_name: Total DNA from sample 296P labeled with Cyanine-5 (red).


title: 253.02P

source_name: Total DNA from sample 253.02P labeled with Cyanine-5 (red).


title: 246.02P

source_name: Total DNA from sample 246.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: 254.02P

source_name: Total DNA from sample 254.02P labeled with Cyanine-5 (red).


title: ADN132.2

source_name: Total DNA from sample ADN132.2 labeled with Cyanine-5 (red).


title: 252.02P

source_name: Total DNA from sample 252.02P labeled with Cyanine-5 (red).


title: 301P

source_name: Total DNA from sample 301P labeled with Cyanine-5 (red).


title: 243.02P

source_name: Total DNA from sample 243.02P labeled with Cyanine-5 (red).


title: 245.02P

source_name: Total DNA from sample 245.02P labeled with Cyanine-5 (red).


title: ADN422.2

source_name: Total DNA from sample ADN422.2 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN421.2

source_name: Total DNA from sample ADN421.2 labeled with Cyanine-5 (red).


title: 242.02P

source_name: Total DNA from sample 242.02P labeled with Cyanine-5 (red).


title: ADN450

source_name: Total DNA from sample ADN450 labeled with Cyanine-5 (red).


title: 256.02P

source_name: Total DNA from sample 256.02P labeled with Cyanine-5 (red).


title: 241.02P

source_name: Total DNA from sample 241.02P labeled with Cyanine-5 (red).


title: ADN448

source_name: Total DNA from sample ADN448 labeled with Cyanine-5 (red).


title: ADN414.2

source_name: Total DNA from sample ADN414.2 labeled with Cyanine-5 (red).


title: ADN417.2

source_name: Total DNA from sample ADN417.2 labeled with Cyanine-5 (red).


title: ADN444

source_name: Total DNA from sample ADN444 labeled with Cyanine-5 (red).


title: ADN447

source_name: Total DNA from sample ADN447 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: U918703

source_name: Total DNA from sample U918703 labeled with Cyanine-5 (red).


title: ADN443

source_name: Total DNA from sample ADN443 labeled with Cyanine-5 (red).


title: 244.02P

source_name: Total DNA from sample 244.02P labeled with Cyanine-5 (red).


title: 341.02P

source_name: Total DNA from sample 341.02P labeled with Cyanine-5 (red).


title: ADN445

source_name: Total DNA from sample ADN445 labeled with Cyanine-5 (red).


title: 346.02P

source_name: Total DNA from sample 346.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: 342.02P

source_name: Total DNA from sample 342.02P labeled with Cyanine-5 (red).


title: ADN446

source_name: Total DNA from sample ADN446 labeled with Cyanine-5 (red).


title: 336.02P

source_name: Total DNA from sample 336.02P labeled with Cyanine-5 (red).


title: 335.02P

source_name: Total DNA from sample 335.02P labeled with Cyanine-5 (red).


title: 340.02P

source_name: Total DNA from sample 340.02P labeled with Cyanine-5 (red).


title: 338.02P

source_name: Total DNA from sample 338.02P labeled with Cyanine-5 (red).


title: 345.02P

source_name: Total DNA from sample 345.02P labeled with Cyanine-5 (red).


title: 333.02P

source_name: Total DNA from sample 333.02P labeled with Cyanine-5 (red).


title: 339.02P

source_name: Total DNA from sample 339.02P labeled with Cyanine-5 (red).


title: 331.02P

source_name: Total DNA from sample 331.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: 344.02P

source_name: Total DNA from sample 344.02P labeled with Cyanine-5 (red).


title: 332.02P

source_name: Total DNA from sample 332.02P labeled with Cyanine-5 (red).


title: ADN1461

source_name: Total DNA from sample ADN1461 labeled with Cyanine-5 (red).


title: 330.02P

source_name: Total DNA from sample 330.02P labeled with Cyanine-5 (red).


title: 329.02P

source_name: Total DNA from sample 329.02P labeled with Cyanine-5 (red).


title: 405P

source_name: Total DNA from sample 405P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: 327.02P

source_name: Total DNA from sample 327.02P labeled with Cyanine-5 (red).


title: 384P

source_name: Total DNA from sample 384P labeled with Cyanine-5 (red).


title: 328.02P

source_name: Total DNA from sample 328.02P labeled with Cyanine-5 (red).


title: 401P

source_name: Total DNA from sample 401P labeled with Cyanine-5 (red).


title: ADN239

source_name: Total DNA from sample ADN239 labeled with Cyanine-5 (red).


title: 383P

source_name: Total DNA from sample 383P labeled with Cyanine-5 (red).


title: CO-21P

source_name: Total DNA from sample CO-21P labeled with Cyanine-5 (red).


title: ADN240

source_name: Total DNA from sample ADN240 labeled with Cyanine-5 (red).


title: 325.02P

source_name: Total DNA from sample 325.02P labeled with Cyanine-5 (red).


title: 311.02P

source_name: Total DNA from sample 311.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: 313.02P

source_name: Total DNA from sample 313.02P labeled with Cyanine-5 (red).


title: ADN451.2

source_name: Total DNA from sample ADN451.2 labeled with Cyanine-5 (red).


title: 317.02P

source_name: Total DNA from sample 317.02P labeled with Cyanine-5 (red).


title: ADN354B

source_name: Total DNA from sample ADN354B labeled with Cyanine-5 (red).


title: ADN463

source_name: Total DNA from sample ADN463 labeled with Cyanine-5 (red).


title: 316.02P

source_name: Total DNA from sample 316.02P labeled with Cyanine-5 (red).


title: 318.02P

source_name: Total DNA from sample 318.02P labeled with Cyanine-5 (red).


title: ADN462

source_name: Total DNA from sample ADN462 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN442.2

source_name: Total DNA from sample ADN442.2 labeled with Cyanine-5 (red).


title: 312.02P

source_name: Total DNA from sample 312.02P labeled with Cyanine-5 (red).


title: ADN449.2

source_name: Total DNA from sample ADN449.2 labeled with Cyanine-5 (red).


title: 491.02P

source_name: Total DNA from sample 491.02P labeled with Cyanine-5 (red).


title: 321.02P

source_name: Total DNA from sample 321.02P labeled with Cyanine-5 (red).


title: 322.02P

source_name: Total DNA from sample 322.02P labeled with Cyanine-5 (red).


title: 489.02P

source_name: Total DNA from sample 489.02P labeled with Cyanine-5 (red).


title: 493.02P

source_name: Total DNA from sample 493.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: ADN441.2

source_name: Total DNA from sample ADN441.2 labeled with Cyanine-5 (red).


title: 544P

source_name: Total DNA from sample 544P labeled with Cyanine-5 (red).


title: 546P

source_name: Total DNA from sample 546P labeled with Cyanine-5 (red).


title: 542P

source_name: Total DNA from sample 542P labeled with Cyanine-5 (red).


title: ADN249

source_name: Total DNA from sample ADN249 labeled with Cyanine-5 (red).


title: 547P

source_name: Total DNA from sample 547P labeled with Cyanine-5 (red).


title: ADN302c

source_name: Total DNA from sample ADN302c labeled with Cyanine-5 (red).


title: ADN248

source_name: Total DNA from sample ADN248 labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: ADN258.2

source_name: Total DNA from sample ADN258.2 labeled with Cyanine-5 (red).


title: ADN241

source_name: Total DNA from sample ADN241 labeled with Cyanine-5 (red).


title: ADN247

source_name: Total DNA from sample ADN247 labeled with Cyanine-5 (red).


title: ADN1292

source_name: Total DNA from sample ADN1292 labeled with Cyanine-5 (red).


title: ADN244

source_name: Total DNA from sample ADN244 labeled with Cyanine-5 (red).


title: ADN242

source_name: Total DNA from sample ADN242 labeled with Cyanine-5 (red).


title: 426.02P

source_name: Total DNA from sample 426.02P labeled with Cyanine-5 (red).


title: 420.02P

source_name: Total DNA from sample 420.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: 423.02P

source_name: Total DNA from sample 423.02P labeled with Cyanine-5 (red).


title: 421.02P

source_name: Total DNA from sample 421.02P labeled with Cyanine-5 (red).


title: 411.02P

source_name: Total DNA from sample 411.02P labeled with Cyanine-5 (red).


title: 430.02P

source_name: Total DNA from sample 430.02P labeled with Cyanine-5 (red).


title: 422.02P

source_name: Total DNA from sample 422.02P labeled with Cyanine-5 (red).


title: 417.02P

source_name: Total DNA from sample 417.02P labeled with Cyanine-5 (red).


title: 406.02P

source_name: Total DNA from sample 406.02P labeled with Cyanine-5 (red).


title: 404.02P

source_name: Total DNA from sample 404.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: 409.02P

source_name: Total DNA from sample 409.02P labeled with Cyanine-5 (red).


title: 418.02P

source_name: Total DNA from sample 418.02P labeled with Cyanine-5 (red).


title: 408.02P

source_name: Total DNA from sample 408.02P labeled with Cyanine-5 (red).


title: 397.02P

source_name: Total DNA from sample 397.02P labeled with Cyanine-5 (red).


title: 419.02P

source_name: Total DNA from sample 419.02P labeled with Cyanine-5 (red).


title: 382.02P

source_name: Total DNA from sample 382.02P labeled with Cyanine-5 (red).


title: 414.02P

source_name: Total DNA from sample 414.02P labeled with Cyanine-5 (red).


title: 402.02P

source_name: Total DNA from sample 402.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 21F labeled with Cyanine-3 (green).


title: 407.02P

source_name: Total DNA from sample 407.02P labeled with Cyanine-5 (red).


title: 403.02P

source_name: Total DNA from sample 403.02P labeled with Cyanine-5 (red).


title: 392.02P

source_name: Total DNA from sample 392.02P labeled with Cyanine-5 (red).


title: 211P

source_name: Total DNA from sample 211P labeled with Cyanine-5 (red).


title: 381.02P

source_name: Total DNA from sample 381.02P labeled with Cyanine-5 (red).


title: 385.02P

source_name: Total DNA from sample 385.02P labeled with Cyanine-5 (red).


title: 388.02P

source_name: Total DNA from sample 388.02P labeled with Cyanine-5 (red).


title: 380.02P

source_name: Total DNA from sample 380.02P labeled with Cyanine-5 (red).


title: 387.02P

source_name: Total DNA from sample 387.02P labeled with Cyanine-5 (red).

source_name: Total DNA from reference sample 20M labeled with Cyanine-3 (green).


title: 455P

source_name: Total DNA from sample 455P labeled with Cyanine-5 (red).


title: 377.02P

source_name: Total DNA from sample 377.02P labeled with Cyanine-5 (red).


title: 461P

source_name: Total DNA from sample 461P labeled with Cyanine-5 (red).


title: 376.02P

source_name: Total DNA from sample 376.02P labeled with Cyanine-5 (red).


title: 459P

source_name: Total DNA from sample 459P labeled with Cyanine-5 (red).