title: NRG1 mutant, replicate 1

status: Public on Feb 27 2010

description: C. dubliniensis wild-type versus homozygous nrg1 deletion mutant.

source_name: C. dubliniensis in YPD broth at 30˚C overnight

label_protocol: mRNA was labelled with Cy5 or Cy3 using the Agilent Two-Color Low RNA input Linear Amplification Kit PLUS.

growth_protocol: Cells were precultured in modified Lee's medium, pH 4.5 at 30˚C overnight.

extract_protocol: Total RNA was extracted using Tri-reagent (Sigma) using a microdismembrator (Braun, Melsungen,Germany). mRNA was isolated with the Sigma Gene elute mRNA Preparation kit.

tag: treatment

value: preculture

source_name: Candida dubliniensis CDM10 (nrg1 mutant) YPD broth, 30˚C overnight

treatment_protocol: For environmental changes, these cultures were washed and diluted and 2 x10^6 cells/ml were added to the appropriate test medium. Cells were spun down at 2,500 x g for 5 min and flash frozen in liquid N2.

value: NRG1 mutant


title: NRG1 mutant, replicate 3

type: RNA

city: Dublin

first: Gary

middle: P.

last: Moran

address: Lincoln Place

department: Dental Science

country: Ireland

institute: Trinity College Dublin

hyb_protocol: Hybridization and washing of the arrays was carried out using the Agilent Gene Expression Hybridization Kit and Gene Expression Wash Pack according to the manufacturer’s instructions.

scan_protocol: Slides were scanned using the GenePix personal 4100A scanner (Axon) and data was extracted with GenePix Pro 6.1 (Axon).

data_processing: Spots were flagged absent if the signal was less than background +1 standard deviation in both fluorescent channels. Raw data was exported to GeneSpring GX10 and signals for each replicate spot were background corrected and normalized using Loess normalization. Log2 fluorescence ratios were generated for each replicate spot and averaged. Oligonucleotides were excluded from analysis if >50% of replicates in each condition were flagged absent.

molecule: total RNA

organism: Candida dubliniensis

tag: strain


title: Nutrient depletion, replicate 4

description: As cell density change with fresh Lee's medium diluted 1/10 in water.

source_name: C. dubliniensis Lee's medium 30˚C, pH 4.5 overnight culture

source_name: Cells from channel 1 diluted to fresh 10% (v/v) Lee's pH 4.5, 30˚C for 3h

value: Nutrient depletion


title: pH Shift, replicate 1

description: As cell density change with shift to pH .

source_name: Cells from channel 1 diluted to fresh Lee's pH 7.5, 30˚C for 3h

value: pH Shift


title: pH Shift, replicate 2


title: NRG1 mutant, replicate 2


title: pH Shift, replicate 3


title: pH Shift, replicate 4


title: NRG1 mutant, replicate 4


title: MDS patient 11

status: Public on Mar 13 2010

city: Oxford

first: Andrea

last: Pellagatti

address: John Radcliffe Hospital

department: NDCLS, RDM

country: United Kingdom

institute: University of Oxford

description: Gene expression data from bone marrow CD34+ cells

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix GeneChip Human Genome U133 Plus 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using an Affymetrix GeneChip Scanner 3000.

data_processing: Affymetrix CEL files were pre-processed using Robust MultiChip Analysis (RMA) using GeneSpring 7.3.1.

label: Biotin

organism: Homo sapiens

source_name: Bone marrow CD34+ cells

label_protocol: 50 ng of total RNA were amplified and biotin-labelled with the Two-Cycle cDNA Synthesis and the Two-Cycle Target Labelling and Control Reagent packages according to the standard Affymetrix protocol.

extract_protocol: Total RNA was extracted using TRIZOL following the manufacturer’s protocol

treatment_protocol: Mononuclear cells were separated using Histopaque density gradient centrifugation, labelled with CD34 MicroBeads, and then CD34+ cells were isolated using MACS magnetic cell separation columns according to the manufacturer’s recommendations.

tag: tissue type

value: bone marrow

tag: cell type

value: CD34+ hematopoietic stem cells (HSC)

tag: disease status

value: myelodysplastic syndromes (MDS)

tag: disease subtype

value: refractory anemia (RA)

tag: genome/variation


title: Nutrient depletion, replicate 3


title: Temp Shift, replicate 4

description: As cell density change with shift to 37˚C.

source_name: Cells from channel 1 diluted to fresh Lee's pH 4.5, 37˚C for 3h

value: Temp shift


title: Temp Shift, replicate 1


title: Nutrient depletion, replicate 1


title: Density change, replicate 2

description: Overnight Lee's medium culture, pH 4.5,  30˚C, diluted to fresh Lee's (2x106 cells/ml) also at 30˚C for 3h.

source_name: Cells from channel 1 diluted to fresh Lee's pH 4.5, 30˚C for 3h

value: Density change


title: Nutrient depletion, replicate 2


title: Density change, replicate 4


title: Temp Shift, replicate 2


title: MDS patient 69

value: refractory anemia with excess blasts 2 (RAEB2)

value: normal


title: MDS patient 66


title: Temp Shift, replicate 3


title: 3h Serum, replicate 4

description: Candida dubliniensis Lee's medium 30˚C, pH 4.5 overnight culture.

source_name: Candida dubliniensis in 10% calf serum at 37˚C for 3h

value: 3h serum


title: 5h Serum, replicate 4

source_name: Candida dubliniensis in 10% calf serum at 37˚C for 5h

value: 5h serum


title: Density change, replicate 1


title: Density change, replicate 3


title: 5h Serum, replicate 2


title: 5h Serum, replicate 1


title: 3h Serum, replicate 3


title: 1h Serum, replicate 1

source_name: Candida dubliniensis in 10% calf serum at 37˚C for 1h

value: 1h serum


title: 1h Serum, replicate 2


title: 5h Serum, replicate 3


title: 1h Serum, replicate 4


title: 3h Serum, replicate 1


title: 1h Serum, replicate 3


title: LUNG CANCER SML243

status: Public on Nov 20 2007

city: seoul

first: Jhinkook

last: Kim

country: South Korea

institute: samsung medical center

description: frozen tissue of primary lung tumors

hyb_protocol: According to the Affymetrix standard protocol. (Affymetrix GeneChip Human Genome U133 Plus 2.0 Array)

data_processing: Affymetrix U133 Plus 2.0 GCRMA DATA

label: biotin

source_name: frozen tissue of primary lung tumor

extract_protocol: According to the Affymetrix standard progocol. (Affymetrix GeneChip Human Genome U133 Plus 2.0 Array)

tag: status (1=recurrence, 0=non-recurrence)

tag: age

tag: gender

value: Male

value: squamous cell carcinoma

tag: recurrence free survival time (month)


title: LUNG CANCER SML251

description: frozen tissue of primary lung tumors

scan_protocol: According to the Affymetrix standard protocol. (Affymetrix GeneChip Human Genome U133 Plus 2.0 Array)


title: LUNG CANCER SML231

description: frozen tissue of primary lung tumors

label_protocol: According to the Affymetrix standard protocol. (Affymetrix GeneChip Human Genome U133 Plus 2.0 Array)

value: Female


title: LUNG CANCER SML224

description: frozen tissue of primary lung tumors

value: Adenocarcinoma


title: 3h Serum, replicate 2

value: preculture


title: LUNG CANCER SML252

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML203

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML227

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML237

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML233

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML196

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML232

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML201

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML198

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML199

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML182

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML186

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML209

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML213

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML234

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML194

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML183

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML191

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML171

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML192

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML177

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML174

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML163

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML154

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML156

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML137

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML136

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML135

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML113

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML101

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML147

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML087

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML079

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML088

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML099

description: frozen tissue of primary lung tumors

tag: tissue

value: frozen tissue of primary lung tumor


title: LUNG CANCER SML105

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML072

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML089

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML100

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML078

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML058

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML071

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML063

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML050

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML092

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML097

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML083

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML094

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML062

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML086

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML049

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML041

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML030

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML081

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML080

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML019

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML059

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML016

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML029

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML024

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML043

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML068

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML010

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML244

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML014

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML190

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML239

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML181

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML176

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML145

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML170

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML200

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML142

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML141

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML013

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML189

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML140

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML175

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML133

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML153

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML152

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML151

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML144

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML138

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML126

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML129

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML122

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML121

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML120

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML119

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML116

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML111

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML115

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML112

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML123

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML118

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML055

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML093

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML061

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML107

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML057

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML091

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML096

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML098

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML048

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML070

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML064

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML110

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML040

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML146

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML047

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML095

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML039

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML067

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML103

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML037

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML035

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML038

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML033

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML247

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML114

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML008

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML012

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML172

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML007

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML143

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML018

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML028

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML021

description: frozen tissue of primary lung tumors


title: Gastrointestinal Stroma Tumor: patient GIST-8, tumor tissue, 1st repetition [2]

status: Public on Jul 01 2003

city: Heidelberg

first: Wolfgang

last: Huber

address: Im Neuenheimer Feld 280

department: Molecular Genome Analysis

country: Germany

institute: German Cancer Research Center

description:
patientid=GIST-8
sex=f
age=60
birthyear=1933
stage=primary
type=GIST
tumorsite=stomach
survival_months=14
died=yes
tumorsize.cm=12
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=(not available)
metastases_or_recurrence=yes
comment=retroperitoneal left upper abdominal cavity (stomach)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623155 reuse=2 date=27-Sep-2000

source_name: Gastrointestinal Stroma Tumor


title: Gastrointestinal Stroma Tumor: patient GIST-9, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-9
sex=m
age=67
birthyear=1929
stage=primary
type=GIST
tumorsite=stomach
survival_months=50
died=no
tumorsize.cm=7
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=4
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623155 reuse=3 date=04-Dec-2000


title: Gastrointestinal Stroma Tumor: patient GIST-11, tumor tissue, 1st repetition [2]

description:
patientid=GIST-11
sex=m
age=74
birthyear=1925
stage=primary
type=GIST
tumorsite=stomach
survival_months=10
died=no
tumorsize.cm=3
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623158 reuse=2 date=27-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-22, tumor tissue, 1st repetition

description:
patientid=GIST-22
sex=m
age=59
birthyear=1940
stage=primary
type=GIST
tumorsite=duodenum
survival_months=18
died=no
tumorsize.cm=15
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from duodenum
Lot batch = filter=36211235 reuse=4 date=23-Jan-2001


title: LUNG CANCER SML031

description: frozen tissue of primary lung tumors


title: Gastrointestinal Stroma Tumor: patient GIST-10, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-10
sex=f
age=76
birthyear=1921
stage=primary
type=GIST
tumorsite=stomach
survival_months=14
died=no
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623156 reuse=3 date=04-Dec-2000


title: Gastrointestinal Stroma Tumor: patient GIST-7, normal tissue, 2nd repetition [2]

description:
patientid=GIST-7
sex=m
age=47
birthyear=1952
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623153 reuse=3 date=29-Nov-2000

source_name: Normal tissue matched to Gastrointestinal Stroma Tumor


title: Gastrointestinal Stroma Tumor: patient GIST-7, normal tissue, 1st repetition [2]

description:
patientid=GIST-7
sex=m
age=47
birthyear=1952
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623154 reuse=2 date=25-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-16, tumor tissue, 1st repetition

description:
patientid=GIST-16
sex=m
age=62
birthyear=1935
stage=primary
type=GIST
tumorsite=duodenum
survival_months=27
died=no
tumorsize.cm=10
CD34_expression=no
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=6
mucosal_ulceration=yes
metastases_or_recurrence=yes
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from duodenum
Lot batch = filter=36211246 reuse=4 date=03-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-8, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-8
sex=f
age=60
birthyear=1933
stage=primary
type=GIST
tumorsite=stomach
survival_months=14
died=yes
tumorsize.cm=12
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=(not available)
metastases_or_recurrence=yes
comment=retroperitoneal left upper abdominal cavity (stomach)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623158 reuse=3 date=04-Dec-2000


title: LUNG CANCER SML011

description: frozen tissue of primary lung tumors


title: Gastrointestinal Stroma Tumor: patient GIST-7, tumor tissue, 1st repetition [2]

description:
patientid=GIST-7
sex=m
age=47
birthyear=1952
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=1
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623153 reuse=2 date=25-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-10, tumor tissue, 1st repetition [2]

description:
patientid=GIST-10
sex=f
age=76
birthyear=1921
stage=primary
type=GIST
tumorsite=stomach
survival_months=14
died=no
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623157 reuse=2 date=27-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-7, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-7
sex=m
age=47
birthyear=1952
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=1
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623154 reuse=3 date=29-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-9, tumor tissue, 1st repetition [2]

description:
patientid=GIST-9
sex=m
age=67
birthyear=1929
stage=primary
type=GIST
tumorsite=stomach
survival_months=50
died=no
tumorsize.cm=7
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=4
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623156 reuse=2 date=27-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-15, tumor tissue, 1st repetition

description:
patientid=GIST-15
sex=f
age=45
birthyear=1952
stage=primary
type=GIST
tumorsite=stomach
survival_months=31
died=no
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=yes
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211247 reuse=4 date=03-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-19, tumor tissue, 1st repetition

description:
patientid=GIST-19
sex=m
age=53
birthyear=1956
stage=primary
type=GIST
tumorsite=rectum
survival_months=10
died=no
tumorsize.cm=8
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=14
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from rectum
Lot batch = filter=36211241 reuse=4 date=01-Feb-2001


title: LUNG CANCER SML128

description: frozen tissue of primary lung tumors


title: Gastrointestinal Stroma Tumor: patient GIST-6, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-6
sex=f
age=72
birthyear=1928
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623152 reuse=3 date=29-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-5, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-5
sex=f
age=81
birthyear=1915
stage=recurrence
type=GIST
tumorsite=stomach
survival_months=45
died=no
tumorsize.cm=17
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=2
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624135 reuse=3 date=28-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-6, tumor tissue, 1st repetition [2]

description:
patientid=GIST-6
sex=f
age=72
birthyear=1928
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623151 reuse=2 date=25-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-13, tumor tissue, 1st repetition

description:
patientid=GIST-13
sex=m
age=64
birthyear=1933
stage=primary
type=GIST
tumorsite=stomach
survival_months=33
died=no
tumorsize.cm=6
CD34_expression=no
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=7
mucosal_ulceration=yes
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211242 reuse=4 date=05-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-14, tumor tissue, 1st repetition

description:
patientid=GIST-14
sex=m
age=69
birthyear=1927
stage=(not available)
type=GIST
tumorsite=mesentery
survival_months=0
died=yes
tumorsize.cm=12
CD34_expression=no
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=20
mucosal_ulceration=(not available)
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from mesentery
Lot batch = filter=36211245 reuse=4 date=03-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-6, normal tissue, 1st repetition [2]

description:
patientid=GIST-6
sex=f
age=72
birthyear=1928
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623152 reuse=2 date=25-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-5, tumor tissue, 1st repetition [2]

description:
patientid=GIST-5
sex=f
age=81
birthyear=1915
stage=recurrence
type=GIST
tumorsite=stomach
survival_months=45
died=no
tumorsize.cm=17
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=2
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624134 reuse=2 date=20-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-11, tumor tissue, 1st repetition

description:
patientid=GIST-11
sex=m
age=74
birthyear=1925
stage=primary
type=GIST
tumorsite=stomach
survival_months=10
died=no
tumorsize.cm=3
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211251 reuse=2 date=27-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-3, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-3
sex=f
age=80
birthyear=1917
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=4
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624131 reuse=3 date=19-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-5, normal tissue, 2nd repetition [2]

description:
patientid=GIST-5
sex=f
age=81
birthyear=1915
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624134 reuse=3 date=28-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-12, tumor tissue, 1st repetition

description:
patientid=GIST-12
sex=m
age=45
birthyear=1951
stage=primary
type=GIST
tumorsite=mesentery
survival_months=37
died=no
tumorsize.cm=5
CD34_expression=no
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=15
mucosal_ulceration=(not available)
metastases_or_recurrence=yes
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from mesentery
Lot batch = filter=36211243 reuse=4 date=05-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-6, normal tissue, 2nd repetition [2]

description:
patientid=GIST-6
sex=f
age=72
birthyear=1928
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3623151 reuse=3 date=29-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-4, tumor tissue, 1st repetition [2]

description:
patientid=GIST-4
sex=f
age=77
birthyear=1923
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=5
CD34_expression=(not available)
SMA_expression=(not available)
S100_expression=(not available)
mitoses_in_10_hpf=2
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624132 reuse=2 date=20-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-7, tumor tissue, 2nd repetition

description:
patientid=GIST-7
sex=m
age=47
birthyear=1952
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=1
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211247 reuse=3 date=29-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-8, tumor tissue, 2nd repetition

description:
patientid=GIST-8
sex=f
age=60
birthyear=1933
stage=primary
type=GIST
tumorsite=stomach
survival_months=14
died=yes
tumorsize.cm=12
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=(not available)
metastases_or_recurrence=yes
comment=retroperitoneal left upper abdominal cavity (stomach)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211251 reuse=3 date=04-Dec-2000


title: Gastrointestinal Stroma Tumor: patient GIST-4, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-4
sex=f
age=77
birthyear=1923
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=5
CD34_expression=(not available)
SMA_expression=(not available)
S100_expression=(not available)
mitoses_in_10_hpf=2
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624133 reuse=3 date=28-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-5, normal tissue, 1st repetition [2]

description:
patientid=GIST-5
sex=f
age=81
birthyear=1915
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624135 reuse=2 date=20-Sep-2000


title: LUNG CANCER SML044

description: frozen tissue of primary lung tumors


title: LUNG CANCER SML053

description: frozen tissue of primary lung tumors


title: Gastrointestinal Stroma Tumor: patient GIST-4, normal tissue, 2nd repetition [2]

description:
patientid=GIST-4
sex=f
age=77
birthyear=1923
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624132 reuse=3 date=28-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-10, tumor tissue, 2nd repetition

description:
patientid=GIST-10
sex=f
age=76
birthyear=1921
stage=primary
type=GIST
tumorsite=stomach
survival_months=14
died=no
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211249 reuse=3 date=04-Dec-2000


title: Gastrointestinal Stroma Tumor: patient GIST-7, normal tissue, 2nd repetition

description:
patientid=GIST-7
sex=m
age=47
birthyear=1952
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211246 reuse=3 date=29-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-4, normal tissue, 1st repetition [2]

description:
patientid=GIST-4
sex=f
age=77
birthyear=1923
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624133 reuse=2 date=20-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-7, normal tissue, 1st repetition

description:
patientid=GIST-7
sex=m
age=47
birthyear=1952
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211247 reuse=2 date=25-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-3, tumor tissue, 1st repetition [2]

description:
patientid=GIST-3
sex=f
age=80
birthyear=1917
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=4
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624125 reuse=2 date=18-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-11, tumor tissue, 2nd repetition

description:
patientid=GIST-11
sex=m
age=74
birthyear=1925
stage=primary
type=GIST
tumorsite=stomach
survival_months=10
died=no
tumorsize.cm=3
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211250 reuse=3 date=04-Dec-2000


title: Gastrointestinal Stroma Tumor: patient GIST-18, tumor tissue, 1st repetition

description:
patientid=GIST-18
sex=m
age=53
birthyear=1945
stage=primary
type=GIST
tumorsite=stomach
survival_months=12
died=no
tumorsize.cm=7
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=4
mucosal_ulceration=(not available)
metastases_or_recurrence=yes
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211236 reuse=4 date=01-Feb-2001


title: Gastrointestinal Stroma Tumor: patient GIST-9, tumor tissue, 1st repetition

description:
patientid=GIST-9
sex=m
age=67
birthyear=1929
stage=primary
type=GIST
tumorsite=stomach
survival_months=50
died=no
tumorsize.cm=7
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=4
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211249 reuse=2 date=27-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-2, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-2
sex=m
age=70
birthyear=1926
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624124 reuse=3 date=19-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-7, tumor tissue, 1st repetition

description:
patientid=GIST-7
sex=m
age=47
birthyear=1952
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=1
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211246 reuse=2 date=25-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-6, tumor tissue, 1st repetition

description:
patientid=GIST-6
sex=f
age=72
birthyear=1928
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211244 reuse=2 date=25-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-10, tumor tissue, 1st repetition

description:
patientid=GIST-10
sex=f
age=76
birthyear=1921
stage=primary
type=GIST
tumorsite=stomach
survival_months=14
died=no
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=0
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211250 reuse=2 date=27-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-3, normal tissue, 2nd repetition [2]

description:
patientid=GIST-3
sex=f
age=80
birthyear=1917
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624125 reuse=3 date=19-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-6, tumor tissue, 2nd repetition

description:
patientid=GIST-6
sex=f
age=72
birthyear=1928
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=11
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211245 reuse=3 date=29-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-1, tumor tissue, 2nd repetition [2]

description:
patientid=GIST-1
sex=m
age=67
birthyear=1929
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=2
CD34_expression=no
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=NaN
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624122 reuse=3 date=14-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-3, normal tissue, 1st repetition [2]

description:
patientid=GIST-3
sex=f
age=80
birthyear=1917
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624131 reuse=2 date=18-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-5, tumor tissue, 1st repetition

description:
patientid=GIST-5
sex=f
age=81
birthyear=1915
stage=recurrence
type=GIST
tumorsite=stomach
survival_months=45
died=no
tumorsize.cm=17
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=2
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211242 reuse=2 date=20-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-5, tumor tissue, 2nd repetition

description:
patientid=GIST-5
sex=f
age=81
birthyear=1915
stage=recurrence
type=GIST
tumorsite=stomach
survival_months=45
died=no
tumorsize.cm=17
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=2
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211243 reuse=3 date=28-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-2, tumor tissue, 1st repetition [2]

description:
patientid=GIST-2
sex=m
age=70
birthyear=1926
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624123 reuse=2 date=18-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-5, normal tissue, 1st repetition

description:
patientid=GIST-5
sex=f
age=81
birthyear=1915
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211243 reuse=2 date=20-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-2, normal tissue, 2nd repetition [2]

description:
patientid=GIST-2
sex=m
age=70
birthyear=1926
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624123 reuse=3 date=19-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-2, tumor tissue, 2nd repetition

description:
patientid=GIST-2
sex=m
age=70
birthyear=1926
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211237 reuse=3 date=19-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-4, tumor tissue, 2nd repetition

description:
patientid=GIST-4
sex=f
age=77
birthyear=1923
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=5
CD34_expression=(not available)
SMA_expression=(not available)
S100_expression=(not available)
mitoses_in_10_hpf=2
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211241 reuse=3 date=28-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-1, tumor tissue, 1st repetition [2]

description:
patientid=GIST-1
sex=m
age=67
birthyear=1929
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=2
CD34_expression=no
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=NaN
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624121 reuse=2 date=12-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-4, normal tissue, 1st repetition

description:
patientid=GIST-4
sex=f
age=77
birthyear=1923
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211241 reuse=2 date=20-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-1, normal tissue, 2nd repetition [2]

description:
patientid=GIST-1
sex=m
age=67
birthyear=1929
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624121 reuse=3 date=14-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-2, normal tissue, 1st repetition [2]

description:
patientid=GIST-2
sex=m
age=70
birthyear=1926
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624124 reuse=2 date=18-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-4, normal tissue, 2nd repetition

description:
patientid=GIST-4
sex=f
age=77
birthyear=1923
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211240 reuse=3 date=28-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-3, normal tissue, 1st repetition

description:
patientid=GIST-3
sex=f
age=80
birthyear=1917
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211239 reuse=2 date=18-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-5, normal tissue, 2nd repetition

description:
patientid=GIST-5
sex=f
age=81
birthyear=1915
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211242 reuse=3 date=28-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-1, normal tissue, 1st repetition [2]

description:
patientid=GIST-1
sex=m
age=67
birthyear=1929
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=3624122 reuse=2 date=12-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-6, normal tissue, 1st repetition

description:
patientid=GIST-6
sex=f
age=72
birthyear=1928
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211245 reuse=2 date=25-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-2, normal tissue, 2nd repetition

description:
patientid=GIST-2
sex=m
age=70
birthyear=1926
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211236 reuse=3 date=19-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-3, tumor tissue, 1st repetition

description:
patientid=GIST-3
sex=f
age=80
birthyear=1917
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=4
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211238 reuse=2 date=18-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-3, tumor tissue, 2nd repetition

description:
patientid=GIST-3
sex=f
age=80
birthyear=1917
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=4
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211239 reuse=3 date=19-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-4, tumor tissue, 1st repetition

description:
patientid=GIST-4
sex=f
age=77
birthyear=1923
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=5
CD34_expression=(not available)
SMA_expression=(not available)
S100_expression=(not available)
mitoses_in_10_hpf=2
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211240 reuse=2 date=20-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-3, normal tissue, 2nd repetition

description:
patientid=GIST-3
sex=f
age=80
birthyear=1917
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211238 reuse=3 date=19-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-2, tumor tissue, 1st repetition

description:
patientid=GIST-2
sex=m
age=70
birthyear=1926
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=4
CD34_expression=yes
SMA_expression=yes
S100_expression=yes
mitoses_in_10_hpf=NaN
mucosal_ulceration=yes
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211236 reuse=2 date=18-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-1, tumor tissue, 2nd repetition

description:
patientid=GIST-1
sex=m
age=67
birthyear=1929
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=2
CD34_expression=no
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=NaN
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211235 reuse=3 date=14-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-6, normal tissue, 2nd repetition

description:
patientid=GIST-6
sex=f
age=72
birthyear=1928
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211244 reuse=3 date=29-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-1, normal tissue, 2nd repetition

description:
patientid=GIST-1
sex=m
age=67
birthyear=1929
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211234 reuse=3 date=14-Nov-2000


title: Gastrointestinal Stroma Tumor: patient GIST-1, tumor tissue, 1st repetition

description:
patientid=GIST-1
sex=m
age=67
birthyear=1929
stage=primary
type=GIST
tumorsite=stomach
survival_months=(not available)
died=(not available)
tumorsize.cm=2
CD34_expression=no
SMA_expression=yes
S100_expression=no
mitoses_in_10_hpf=NaN
mucosal_ulceration=no
metastases_or_recurrence=(not available)
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211234 reuse=2 date=12-Sep-2000


title: Gastrointestinal Stroma Tumor: patient GIST-2, normal tissue, 1st repetition

description:
patientid=GIST-2
sex=m
age=70
birthyear=1926
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211237 reuse=2 date=18-Sep-2000