title: 01-646

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):19.83333333; STATUS(0=alive, 1=dead):1


title: 01-369

status: Public on Nov 07 2005

type: RNA

city: Durham

first: Joseph

middle: R.

last: Nevins

state: NC

address: 2133 CIEMAS, 101 Science Dr.

department: IGSP

country: USA

institute: Duke University

description: frozen tissue of primary lung tumors

data_processing: Affymetrix Microarray Suite version 5.0

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: frozen tissue of primary lung tumor

value: Cell type:S; Surv(months):25.53333333; STATUS(0=alive, 1=dead):0


title: 01-534

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):31.13333333; STATUS(0=alive, 1=dead):1


title: 01-284

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):2.733333333; STATUS(0=alive, 1=dead):0


title: 01-331

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):24.13333333; STATUS(0=alive, 1=dead):1


title: 97-930

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):39.6; STATUS(0=alive, 1=dead):1


title: 01-181

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):31.13333333; STATUS(0=alive, 1=dead):0


title: 00-941

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):24.33333333; STATUS(0=alive, 1=dead):1


title: 00-827

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):13.26666667; STATUS(0=alive, 1=dead):1


title: 00-1059

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):23.63333333; STATUS(0=alive, 1=dead):1


title: 00-1074

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):39; STATUS(0=alive, 1=dead):1


title: 00-452

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):33.8; STATUS(0=alive, 1=dead):1


title: 01-236

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):2.633333333; STATUS(0=alive, 1=dead):0


title: 00-398

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):29.13333333; STATUS(0=alive, 1=dead):1


title: 00-1072

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):41.66666667; STATUS(0=alive, 1=dead):0


title: 00-1082

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):41.63333333; STATUS(0=alive, 1=dead):0


title: 01-424

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):25.43333333; STATUS(0=alive, 1=dead):0


title: 96-353

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):28.36666667; STATUS(0=alive, 1=dead):1


title: 00-145

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):51.23333333; STATUS(0=alive, 1=dead):0


title: 00-253

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):12.33333333; STATUS(0=alive, 1=dead):0


title: 96-264

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):82.93333333; STATUS(0=alive, 1=dead):0


title: 97-792

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):74.63333333; STATUS(0=alive, 1=dead):0


title: 98-417

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):27.2; STATUS(0=alive, 1=dead):1


title: 00-550

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):33.43333333; STATUS(0=alive, 1=dead):0


title: 97-608

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):81.16666667; STATUS(0=alive, 1=dead):0


title: 97-829

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):12.33333333; STATUS(0=alive, 1=dead):1


title: 97-666

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):51.26666667; STATUS(0=alive, 1=dead):1


title: 00-334

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):37.5; STATUS(0=alive, 1=dead):0


title: 99-706

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):59.23333333; STATUS(0=alive, 1=dead):0


title: 98-956

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):59.46666667; STATUS(0=alive, 1=dead):0


title: 98-438

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):55.36666667; STATUS(0=alive, 1=dead):1


title: 00-440

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):28.86666667; STATUS(0=alive, 1=dead):1


title: 00-703

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):42.63333333; STATUS(0=alive, 1=dead):0


title: 98-828

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):43.8; STATUS(0=alive, 1=dead):0


title: 98-1277

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):55.93333333; STATUS(0=alive, 1=dead):0


title: 98-343

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):49.5; STATUS(0=alive, 1=dead):0


title: 98-723

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):12.46666667; STATUS(0=alive, 1=dead):1


title: 98-1063

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):19.16666667; STATUS(0=alive, 1=dead):1


title: 00-327

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):9.733333333; STATUS(0=alive, 1=dead):1


title: 97-1027

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):1.066666667; STATUS(0=alive, 1=dead):1


title: 98-197

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):70.86666667; STATUS(0=alive, 1=dead):0


title: 99-1067

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):45.26666667; STATUS(0=alive, 1=dead):1


title: 00-151

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):6.333333333; STATUS(0=alive, 1=dead):1


title: 99-137

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):22.56666667; STATUS(0=alive, 1=dead):1


title: 99-301

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):9.533333333; STATUS(0=alive, 1=dead):1


title: 98-186

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):49.43333333; STATUS(0=alive, 1=dead):1


title: 98-691

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):4.9; STATUS(0=alive, 1=dead):1


title: 00-315

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):45.2; STATUS(0=alive, 1=dead):0


title: 98-375

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):14.13333333; STATUS(0=alive, 1=dead):1


title: 98-967

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):21.33333333; STATUS(0=alive, 1=dead):1


title: 98-1293

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):59.4; STATUS(0=alive, 1=dead):0


title: 99-1017

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):54.3; STATUS(0=alive, 1=dead):0


title: 98-1296

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):63.53333333; STATUS(0=alive, 1=dead):0


title: 99-830

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):22.5; STATUS(0=alive, 1=dead):1


title: 98-152

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):73.33333333; STATUS(0=alive, 1=dead):0


title: 00-11

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):5.3; STATUS(0=alive, 1=dead):1


title: 99-728

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):48.63333333; STATUS(0=alive, 1=dead):0


title: 98-657

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):39.6; STATUS(0=alive, 1=dead):1


title: 99-692

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):31.9; STATUS(0=alive, 1=dead):1


title: 98-1014

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):20.3; STATUS(0=alive, 1=dead):1


title: 98-683

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):33.56666667; STATUS(0=alive, 1=dead):1


title: 99-671

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):58.53333333; STATUS(0=alive, 1=dead):0


title: 98-320

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):17; STATUS(0=alive, 1=dead):1


title: 99-440

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):35.2; STATUS(0=alive, 1=dead):0


title: 98-1216

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):16.93333333; STATUS(0=alive, 1=dead):1


title: 97-1026

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):13.1; STATUS(0=alive, 1=dead):1


title: 99-1033

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):43.36666667; STATUS(0=alive, 1=dead):0


title: 10-00

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):14.46666667; STATUS(0=alive, 1=dead):1


title: 98-711

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):60.76666667; STATUS(0=alive, 1=dead):0


title: 96-475

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):87.26666667; STATUS(0=alive, 1=dead):0


title: 98-1146

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):42.8; STATUS(0=alive, 1=dead):1


title: 97-587

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):39.26666667; STATUS(0=alive, 1=dead):1


title: 96-3

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):33.8; STATUS(0=alive, 1=dead):1


title: 99-927

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):35.1; STATUS(0=alive, 1=dead):0


title: 98-821

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):35.66666667; STATUS(0=alive, 1=dead):0


title: 98-506

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):71.1; STATUS(0=alive, 1=dead):0


title: 99-77

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):13.96666667; STATUS(0=alive, 1=dead):0


title: 98-853

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):5.166666667; STATUS(0=alive, 1=dead):0


title: 98-933

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):28.1; STATUS(0=alive, 1=dead):1


title: 99-55

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):11.6; STATUS(0=alive, 1=dead):1


title: 98-543

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):24.1; STATUS(0=alive, 1=dead):0


title: 98-401

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):68.36666667; STATUS(0=alive, 1=dead):0


title: 97-403

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):8.666666667; STATUS(0=alive, 1=dead):1


title: 00-479

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):1.9; STATUS(0=alive, 1=dead):1


title: 98-679

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):59.83333333; STATUS(0=alive, 1=dead):0


title: 97-949

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):57.83333333; STATUS(0=alive, 1=dead):0


title: 98-292

description: frozen tissue of primary lung tumors

value: Cell type:S; Surv(months):66.03333333; STATUS(0=alive, 1=dead):0


title: WT2_1h

status: Public on Mar 16 2005

city: Lund

first: Markus

last: Ringner

address: Sölvegatan 35

country: Sweden

institute: Lund University

description: Murine embryonic fibroblast cell lines: wild type stimulated with TGFbeta for 1 hour vs wild type experiment.

organism: Mus musculus

source_name: Murine embryonic fibroblasts wild type + 1h TGFbeta

source_name: Murine embryonic fibroblasts wild type


title: WT1 vs WT1

description: Murine embryonic fibroblast cell lines:wild type vs wild type experiment (separate RNA extractions).


title: WT1_1h


title: 00-909

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):11.16666667; STATUS(0=alive, 1=dead):1


title: WT1_5h

description: Murine embryonic fibroblast cell lines: wild type stimulated for 5 hours with TGFbeta vs wild type.

source_name: Murine embryonic fibroblasts wild type + 5h TGFbeta


title: 98-985

description: frozen tissue of primary lung tumors

value: Cell type:A; Surv(months):34.8; STATUS(0=alive, 1=dead):0


title: KO1

description: Murine embryonic fibroblast cell lines: knock out of Alk5 vs wild type.

source_name: Murine embryonic fibroblasts Alk5-/-


title: WT2_16h

description: Murine embryonic fibroblast cell lines: wild type stimulated for 16 hours with TGFbeta vs wild type.

source_name: Murine embryonic fibroblasts wild type + 16h TGFbeta


title: KO2_2

description: Murine embryonic fibroblast cell lines: knock out of Alk5 vs wild type experiment.


title: KO1_DS

description: Murine embryonic fibroblast cell lines: knock out of Alk5 vs wild type dye swap experiment.


title: KO2_8h vs KO2

description: Murine embryonic fibroblast cell lines: knock out of Alk5 stimulated with TGFbeta for 8 hours vs knock out of Alk5.

source_name: Murine embryonic fibroblasts Alk5-/- + 8h TGFbeta


title: WT2_5h

description: Murine embryonic fibroblast cell lines: wild type stimulated with TGFbeta for 5 hours vs wild type experiment.


title: 4878 upper lobe

status: Public on Nov 15 2004

city: Aurora

first: Christopher

middle: D

last: Coldren

state: CO

address: 12700 East 17th Place

department: Medicine

institute: University of Colorado School of Medicine

description: Normal Human Lung

hyb_protocol: standard Affymetrix procedures

scan_protocol: standard Affymetrix procedures

data_processing: GCRMA

source_name: Lung

label_protocol: Approximately 5 micrograms of total RNA was processed to produce biotinylated cRNA targets using the older (ENZO) Affymetrix protocol

extract_protocol: Thirty to fifty milligrams of frozen lung tissue was homogenized and total RNA extracted using the Qiagen MiniElute protocol (Qiagen, Valencia, CA).

tag: Normal Human Lung


title: KO1_8h vs KO1


title: 4874 upper lobe

description: Normal Human Lung


title: KO2


title: 4827 upper lobe replicate 5

description: Normal Human Lung


title: WT1_16h


title: 4874 lower lobe

description: Normal Human Lung


title: 4863 lower lobe

description: Normal Human Lung


title: 4851 lower lobe

description: Normal Human Lung


title: 4860 lower lobe

description: Normal Human Lung


title: 4827 upper lobe replicate 3

description: Normal Human Lung


title: 4859 lower lobe

description: Normal Human Lung


title: 4827 upper lobe replicate 2

description: Normal Human Lung


title: 4827 upper lobe replicate 1

description: Normal Human Lung


title: 4827 upper lobe replicate 4

description: Normal Human Lung


title: 4878 lower lobe

description: Normal Human Lung


title: 4827 lower lobe replicate 5

description: Normal Human Lung


title: 4827 lower lobe replicate 3

description: Normal Human Lung


title: 4826 lower lobe

description: Normal Human Lung


title: 4827 lower lobe replicate 1

description: Normal Human Lung


title: 4827 lower lobe replicate 2

description: Normal Human Lung


title: 4816 lower lobe

description: Normal Human Lung


title: 4824 lower lobe

description: Normal Human Lung


title: 4818 lower lobe

description: Normal Human Lung


title: 20017 lower lobe

description: Normal Human Lung


title: 4825 lower lobe

description: Normal Human Lung


title: 20021 upper lobe

description: Normal Human Lung


title: 20015 lower lobe

description: Normal Human Lung


title: 20010 lower lobe

description: Normal Human Lung


title: 20008 lower lobe

description: Normal Human Lung


title: 4827 lower lobe replicate 4

description: Normal Human Lung


title: 20002 upper lobe

description: Normal Human Lung


title: 4804 lower lobe

description: Normal Human Lung


title: 9N

status: Public on Aug 08 2004

city: Boston

first: Avrum

last: Spira

state: MA

address: 715 Albany Street, R304

department: Pulmonary and Critical Care Medicine

institute: Boston University Medical Center

description:
Lung tissue and ressected lung taken from smokers
Keywords = Smoking, COPD, lung reduction, airway, molecular screen for spatially restricted transcripts

source_name: Lung Tissue


title: 7N


title: 8N


title: 20010 upper lobe

description: Normal Human Lung


title: 20021 lower lobe

description: Normal Human Lung


title: 20024 lower lobe

description: Normal Human Lung


title: 20016 lower lobe

description: Normal Human Lung


title: 8L


title: 20000 lower lobe

description: Normal Human Lung


title: 20015 upper lobe

description: Normal Human Lung


title: 20008 upper lobe

description: Normal Human Lung


title: 20017 upper lobe

description: Normal Human Lung


title: 9L


title: 20002 lower lobe

description: Normal Human Lung


title: 20014 lower lobe

description: Normal Human Lung


title: 5N


title: 6N


title: 4L


title: 3N


title: 5L


title: 16L


title: 15L


title: 1L


title: 7L


title: 13L


title: 6L


title: 3L


title: 2N


title: 4N


title: 14L


title: 17L


title: 11N


title: 18L


title: 12N


title: 10N


title: 2L


title: 11L


title: 10L


title: 12L


title: FormerSmoker 95

status: Public on Jan 27 2004

description:
Volunteer patients underwent bronchoscopy from which RNA was extracted using a commercial RNA extraction kit. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Homo Sapiens, bronchial epithelia, molecular screen for smoking related changes to transcript levels in bronchial epithelia

hyb_protocol: Affymetrix Suggested Protocol

scan_protocol: Affymetrix Suggested Protocol

data_processing: MAS5.0 Scaled 100 generated expression value

source_name: Bronchial Epithelia

label_protocol: Affymetrix Suggested Protocol

extract_protocol: RNA was extracted by using TRIzol Reagent (Invitrogen) according to the manufacturer's protocol

tag: tissue

value: Bronchial Epithelium


title: FormerSmoker 104


title: FormerSmoker 107


title: FormerSmoker 114


title: FormerSmoker 89


title: FormerSmoker 110


title: FormerSmoker 87


title: FormerSmoker 69


title: FormerSmoker 84


title: FormerSmoker 28


title: FormerSmoker 61


title: FormerSmoker 72


title: FormerSmoker 27


title: FormerSmoker 18


title: FormerSmoker 41


title: NeverSmoker 100


title: NeverSmoker 105


title: NeverSmoker 103


title: FormerSmoker 76


title: NeverSmoker 78


title: NeverSmoker 70


title: NeverSmoker 118


title: NeverSmoker 96


title: Sample_40_former smoker without cancer

source_name: former smoker without cancer

tag: sex

value: Male

tag: race

value: AFA

tag: age

tag: pkyrs

tag: history

value: former smoker without cancer

tag: status

value: SNC


title: NeverSmoker 93


title: FormerSmoker 34


title: Never Smoker Sample 59

source_name: Bronchial epithelium, never smoker


title: NeverSmoker 94


title: NeverSmoker 108


title: Sample_48_never smoker

source_name: never smoker

value: CAU

value: never smoker

value: NS


title: NeverSmoker 52


title: Sample_60_never smoker


title: NeverSmoker 45


title: Sample_47_never smoker

value: Female


title: Sample_46_never smoker


title: NeverSmoker 38


title: NeverSmoker 42


title: Sample_43_never smoker


title: CurrentSmoker 116


title: CurrentSmoker 112


title: NeverSmoker 3


title: CurrentSmoker 113


title: Sample_44_never smoker


title: CurrentSmoker 111


title: NeverSmoker 5


title: CurrentSmoker 109


title: CurrentSmoker 106


title: CurrentSmoker 97


title: CurrentSmoker 92


title: CurrentSmoker 81


title: CurrentSmoker 82


title: CurrentSmoker 73


title: CurrentSmoker 75


title: CurrentSmoker 83


title: CurrentSmoker 102


title: CurrentSmoker 88


title: CurrentSmoker 99


title: CurrentSmoker 98


title: CurrentSmoker 115


title: CurrentSmoker 77


title: CurrentSmoker 91


title: CurrentSmoker 67


title: Sample_71_current smoker without cancer

source_name: current smoker without cancer

value: current smoker without cancer


title: CurrentSmoker 54


title: CurrentSmoker 79


title: CurrentSmoker 68


title: Sample_58_current smoker without cancer

value: ASI


title: CurrentSmoker 36


title: CurrentSmoker 1


title: CurrentSmoker 2


title: CurrentSmoker 37


title: CurrentSmoker 12


title: CurrentSmoker 10


title: CurrentSmoker 39


title: CurrentSmoker 29