title: mock_3

description:
Seedlings, sprayed with mock and were gravistimulated by turning then 90° relative to the first direction for 8h after grown vertically for 4 days on MS plates, biological rep3
No additional information


title: cyn mutant at before flowering stage biological rep1

status: Public on Nov 03 2014

type: RNA

city: Kunming

first: LI

last: JUAN

state: Yunnan

address: Black Dragon Pool

department: Rice Research Institute

country: China

institute: Yunnan Agricultural University

description: Gene expression data from panicles of cyn wild lines at before flowering stage

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip ** Genome Array in the Affymetrix Hybridization Oven 640. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the affymetrix scanner 3000 7G.The scanned images were first assessed by visual inspection then analyzed to generate raw data files saved as CEL files using the default setting of AGCC.

data_processing: The data were analyzed with Expression Console Software using RMA algorithm.

label: biotin

molecule: total RNA

organism: Oryza sativa Japonica Group

source_name: cyn mutant at before flowering stage

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1ug total RNA (Expression Analysis Technical Manual, Affymetrix).

growth_protocol: All of materials were grown in a greenhouse under natural daylight.

extract_protocol: The samples for microarray analysis were homogenized in 1 ml Trizol (Invitrogen, Carlsbad, CA), and RNA extracted using RNEasy miniprep columns (Qiagen, Valencia, CA) according to the manufacturer’s instructions.

tag: tissue

value: panicles

tag: developmental stage

value: before flowering stage

tag: genotype

value: cyn mutant

tag: cultivar

value: japonica


title: cyn mutant at 5 days after pollination stage biological rep3

description: Gene expression data from panicles of cyn wild lines at 5 days after pollination stage

value: 5 days after pollination stage


title: NJ15_3

city: Aomori

first: Yuji

last: Nakai

state: Aomori

address: 2-1-1, Yanagawa

department: Institute of Regional Innovation

country: Japan

institute: Hirosaki University

description:
Seedlings, sprayed with 10 µM NJ15 and were gravistimulated by turning then 90° relative to the first direction for 8h after grown vertically for 4 days on MS plates, biological rep3
No additional information

hyb_protocol: Following fragmentation, 12.5 µg aRNA were hybridized for 16 hr at 45°C on Affymetrix GeneChip Arabidopsis ATH1 Genome Array. GeneChips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.

data_processing: CEL files were quantified with the Factor Analysis for Robust Microarray Summarization (FARMS) method, using the statistical language R (R-2.7.2) and Bioconductor 2.2.

organism: Arabidopsis thaliana

label_protocol: biotinylated aRNA was obtained from 100 ng of purified total RNA using a GeneChip 3’ IVT Express Kit (Affymetrix, Santa Clara, CA, USA).

extract_protocol: Total RNA was purified with an RNA Extraction Kit Mini for plant (RBC Bioscience).

treatment_protocol: For DNA microarray analysis, wild type Col-0 plants, grown vertically as a gravitropic response assay for 4 days on MS plates, were sprayed with mock or with 10 µM NJ15 and were gravistimulated by turning then 90° relative to the first direction. After 8 h, plants were harvested and total RNA was extracted with a Total RNA Extraction Kit Mini for plant (RBC Bioscience), then total RNA was subjected to microarray analysis.

tag: treatment

tag: strain

value: Seedlings

tag: age

value: 4 days


title: CYN wild lines at 5 days after pollination stage biological rep3

description: Gene expression data from panicles of CYN wild lines at 5 days after pollination stage

value: wild type


title: CYN wild lines at 5 days after pollination stage biological rep1


title: mock_1

description:
Seedlings, sprayed with mock and were gravistimulated by turning then 90° relative to the first direction for 8h after grown vertically for 4 days on MS plates, biological rep1
No additional information


title: control 2

city: Baltimore

first: Andreas

middle: Sebastian

last: Barth

state: MD

address: 720 Rutland Ave.

department: Medicine, Division of Cardiology

country: USA

institute: Johns Hopkins University

description: non-failing control - 2

hyb_protocol: Standard Illumina hybridization protocol.

scan_protocol: Standard Illumina scanning protocol.

data_processing: The data were normalized using quantile normalization with Solo, a simple standalone tood implementing the quantile-quantile normalization method (Univ. of Strasbourg, France)

organism: Mus musculus

source_name: mouse myocardium, left ventricle

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

growth_protocol: All mice were supplied with the same diet and water ad libitum; Mice were maintained on a 12-hour light/dark cycle in a temperature and humidity controlled environment.

extract_protocol: Total RNA was preparted using TRIzol reagent (Invitrogen) from left ventricular myocardial tissue. Total RNA yield and purity (260nm:280nm) were determined spectrophotometrically. The integrity (RIN>9.0) of the re-suspended total RNA was determined using the RNA Nano Chip Kit on the Bioanalyzer 2100 and the 2100 Expert software (Agilent).

treatment_protocol: For intraperitoneal injection, 10mg tamoxifen free base (T5648, Sigma) was dissolved in 1mL peanut oil (Sigma) and then sonicated. 100microL (1.0 mg tamoxifen) was injected daily (40mg/kg/day, i.p.) for 5 days.

tag: gender

value: male

value: 12-20 weeks

value: myocardium, left ventricle


title: NJ15_2

description:
Seedlings, sprayed with 10 µM NJ15 and were gravistimulated by turning then 90° relative to the first direction for 8h after grown vertically for 4 days on MS plates, biological rep2
No additional information


title: CYN wild lines at before flowering stage biological rep3

description: Gene expression data from panicles of CYN wild lines at before flowering stage


title: CYN wild lines at before flowering stage biological rep2


title: cyn mutant at 5 days after pollination stage biological rep2


title: mock_2

description:
Seedlings, sprayed with mock and were gravistimulated by turning then 90° relative to the first direction for 8h after grown vertically for 4 days on MS plates, biological rep2
No additional information


title: KU_47N

city: Houston

first: Sangbae

last: Kim

state: TX

address: 1 Baylor plaza

department: HGSC

institute: Baylor Colleage of Medicine

description: To export gene expression data based on unique genes, we used the Sample Gene Profile option of Illumina BeadStudio software. All 47231 probes on the Human-12 BeadChip ver.4 were used.

hyb_protocol: Labeled, amplified material (750 ng per array) was hybridized to the Illumina HumanHT-12 V4.0 expression BeadChip according to the manufacturer's instructions (Illumina, Inc., San Diego, CA).

scan_protocol: Arrays were scanned with an Illumina BeadArray Reader confocal scanner (BeadStation 500GXDW; Illumina, Inc., San Diego, CA) according to the manufacturer's instructions.

data_processing: Array data processing was performed on Illumina BeadStudio software. We normalized gene expression data using quantile normalization and log2 transformation. To export to a data matrix, the Sample Gene Profile option of this software was used.

label: Biotin

organism: Homo sapiens

source_name: HCC non-tumor

label_protocol: Biotin-labeled cRNA samples for hybridization were prepared according to Illumina's recommended sample labeling procedure: 750 ng of total RNA was used for cDNA synthesis, followed by an amplification/labeling step (in vitro transcription) to synthesize biotin-labeled cRNA using the Illumina TotalPrep RNA Amplification kit (Ambion, Inc., Austin, TX). cRNA concentrations were determined using a spectrophotometer (Nanodrop, ND-1000).

extract_protocol: Total RNA was isolated from tissues with the mirVana RNA Isolation labeling kit (Ambion, Inc.) according to the manufacturer's protocol. RNA quality and integrity were confirmed by the ExperionTM Automated Electrophoresis System (BIO-RAD).

value: F

tag: disease state

value: hepatocellular carcinoma (HCC)

value: non-tumor


title: KU_49N

value: M


title: KU_46N


title: KU_43N


title: KU_50N


title: KU_45N


title: KU_44N


title: KU_39N


title: KU_38N


title: KU_36N


title: KU_42N


title: KU_40N


title: KU_37N


title: KU_41N


title: KU_33N


title: KU_34N


title: KU_32N


title: KU_35N


title: KU_31N


title: KU_30N


title: Genomic DNA from cord blood leukocytes C058

type: genomic

city: Old Pittsboro Rd.

first: Jose Daniel

last: Rojas Rojas

state: NC

address: MHRC 0032

department: Environmental Science and Engineering

institute: University of North Carolina at Chapel Hill

description:
High iAs
The high iAs corresponds to the highest 10 individuals of the 38, the low to the lowest 10 individuals of the 38 and the midrange are just the other 18 in the middle.

hyb_protocol: Samples were hybridized to IlluminaMethylation BeadChips array

scan_protocol: BeadChips were coated and then imaged on an Illumina iScan Reader

data_processing: Illumina GenomeStudio Methylation Module

label: Cy5 and Cy3

molecule: genomic DNA

source_name: Cord blood leukocyte genomic DNA

label_protocol: IlluminaHumanMethylation450k BeadChip bisulfite conversion with Zymo EZ DNA Methylation kit

growth_protocol: N/A (Human cohort data)

extract_protocol: Cord blood samples were collected using Paxgene Blood DNA tubes and extracted using the PaxGene Blood DNA kit (Qiagen, Valencia, CA) per manufacturer's specificationsIsolated DNA was first bisulfite-converted using the EZ DNA methylation kit (Zymo Research, Irvine, CA) and converted DNA was then hybridized onto the BeadChip.

treatment_protocol: N/A (Human cohort data)

tag: batch

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: KU_29N

tag: age

tag: tissue


title: KU_25N

tag: gender

tag: disease state


title: KU_27N


title: Genomic DNA from cord blood leukocytes C071

tag: batch

tag: education


title: KU_28N


title: KU_26N


title: KU_24N


title: Genomic DNA from cord blood leukocytes C024

tag: smoker

tag: alcohol


title: KU_23N


title: Genomic DNA from cord blood leukocytes C003

tag: children

tag: bw/ga


title: KU_22N


title: Genomic DNA from cord blood leukocytes C074

tag: height

tag: placenta weight


title: Genomic DNA from cord blood leukocytes C116

tag: head circumference

tag: sg


title: KU_20N


title: Genomic DNA from cord blood leukocytes C067

tag: ias

tag: mas


title: KU_21N


title: Genomic DNA from cord blood leukocytes C133

tag: dmas

tag: sum


title: Genomic DNA from cord blood leukocytes C120

tag: age


title: KU_48N

tag: gender

tag: tissue


title: Genomic DNA from cord blood leukocytes C062

description:
Midrange iAs concentration
The high iAs corresponds to the highest 10 individuals of the 38, the low to the lowest 10 individuals of the 38 and the midrange are just the other 18 in the middle.

tag: batch


title: Genomic DNA from cord blood leukocytes C079

tag: education


title: Genomic DNA from cord blood leukocytes C129

tag: smoker


title: Genomic DNA from cord blood leukocytes C104

tag: alcohol


title: Genomic DNA from cord blood leukocytes C007

tag: children


title: Genomic DNA from cord blood leukocytes C059

tag: bw/ga


title: 118_52070900803931090410408220339019

city: Stockholm

first: Nicholas

last: Tobin

address: Cancer Center Karolinska

country: Sweden

institute: Karolinska Institutet

description: Gene expression data from breast cancer metastasis sampled before commencement of treatment for metastatic disease

hyb_protocol: GeneChip microarrays are loaded with the fragmented target sample/hybridization buffer mix using standard manual techniques.  Arrays are hybridized for 18 hours at 45C with vigorous mixing.   Unbound sample is removed and staining is accomplished through the binding of streptavidin conjugated phycoerythrin to the hybridized target. Excess label is removed.  Washing and staining steps are performed by the Affymetrix FS450 fluidics station using standard protocols.

scan_protocol: Arrays are scanned using a GeneChip Scanner 3000 7G with a 48 array autoloader. The scanner maintains the optimal temperature for the arrays prior to and during scanning.

data_processing: Data were processed in the open source software R using the RMA algorithm as deployed from with the aroma.affymetrix package

source_name: Breast cancer metastasis

label_protocol: Samples are processed in parallel in 96-well plates to minimize potential variation.  Reaction purification is achieved using magnetic binding beads for cDNA and Qiagen RNeasy kits for cRNA purification. The final in vitro transcription incorporates biotin moieties that are later labeled with phycoerythrin.  After amplification, samples are put through a controlled fragmentation to improve hybridization sensitivity and consistency.  The labeled molecules are biotinylated-cRNA.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

tag: sample type

value: Fine-needle aspirate

tag: anatomical site

value: Lymph node

tag: pam50 subtype

value: Basal

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: Genomic DNA from cord blood leukocytes C117

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: Genomic DNA from cord blood leukocytes C027


title: 120_52070900803931090410408220339022

tag: sample type

tag: anatomical site

value: Liver

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile


title: KU_19N

tag: age

tag: gender

tag: disease state

tag: tissue


title: 119_52070900803931090410408220339020

tag: sample type

tag: anatomical site

value: Skin

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: pik3ca module tertile


title: Genomic DNA from cord blood leukocytes C081

tag: batch

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: Genomic DNA from cord blood leukocytes C134

tag: age


title: 115_52070900803930090410408220338961

tag: sample type

tag: anatomical site

tag: pam50 subtype

value: LumB

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile


title: Genomic DNA from cord blood leukocytes C111

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: Genomic DNA from cord blood leukocytes C026


title: 116_52070900803930090410408220338964

tag: sample type

tag: anatomical site

value: Skeleton

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: pik3ca module tertile


title: 114_52070900803930090410408220338957

tag: sample type

tag: anatomical site

value: Breast

tag: pam50 subtype

value: Normal

tag: betac module tertile


title: Genomic DNA from cord blood leukocytes C132

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: 117_52070900803931090410408220339009

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: pik3ca module tertile


title: Genomic DNA from cord blood leukocytes C124

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: 113_52070900803930090410408220338951

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile


title: 112_52070900803930090410408220338950

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: pik3ca module tertile


title: Genomic DNA from cord blood leukocytes C086

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: Genomic DNA from cord blood leukocytes C123


title: 110_52070900803930090410408220338945

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile


title: 109_52070900803930090410408220338944

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: pik3ca module tertile


title: Genomic DNA from cord blood leukocytes C085

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: Genomic DNA from cord blood leukocytes C092

description:
Low iAs
The high iAs corresponds to the highest 10 individuals of the 38, the low to the lowest 10 individuals of the 38 and the midrange are just the other 18 in the middle.


title: 111_52070900803930090410408220338949

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile


title: 108_52070900803930090410408220338943

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: pik3ca module tertile


title: 106_52070900803930090410408220338940

value: LumA

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile


title: Genomic DNA from cord blood leukocytes C194

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: Genomic DNA from cord blood leukocytes C151


title: Genomic DNA from cord blood leukocytes C029


title: Genomic DNA from cord blood leukocytes C139


title: 102_52070900803930090410408220338931

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 103_52070900803930090410408220338933

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: plau module tertile


title: 107_52070900803930090410408220338941

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: vegf module tertile


title: 105_52070900803930090410408220338937

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile


title: Genomic DNA from cord blood leukocytes C094

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: 101_52070900803930090410408220338930

tag: sample type

tag: anatomical site

value: Lung/Pleura

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 104_52070900803930090410408220338935

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: mapk module tertile


title: Genomic DNA from cord blood leukocytes C113

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: 99_52070900803930090410408220338922

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 100_52070900803930090410408220338926

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: mapk module tertile


title: 98_52070900803930090410408220338921

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile


title: Genomic DNA from cord blood leukocytes C075

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: 96_52070900803929090410408220338902

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 97_52070900803930090410408220338916

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: plau module tertile


title: Genomic DNA from cord blood leukocytes C115

tag: batch

tag: age

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: Genomic DNA from cord blood leukocytes C095


title: Genomic DNA from cord blood leukocytes C128


title: genomic DNA from human muscle of subject S11a15d72

city: Los Angeles

first: Steve

last: Horvath

state: CA

address: 695 Charles E. Young Drive South, Box 708822

department: Human Genetics

institute: University of California, Los Angeles

description: genomic DNA from human muscle tissue

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing: BeadStudio software v3.2.

label: Cy3, Cy5

source_name: Muscle

label_protocol: Standard Illumina Protocol

growth_protocol: DNA extracted from fresh frozen tissue

extract_protocol: For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1.4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.

treatment_protocol: Standard Illumina Protocol

tag: subjectid

tag: Sex

value: female

value: AllPrep

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

value: NASH

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis


title: 92_52070900803929090410408220338892

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human muscle of subject S11a15c82

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

value: male

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

value: NAFLD

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis


title: 93_52070900803929090410408220338894

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile


title: genomic DNA from human muscle of subject S11a15b12

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

value: HealthyObese

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation


title: 94_52070900803929090410408220338897

tag: sample type

value: Fine-needle aspirate

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 91_52070900803929090410408220338890

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile


title: 90_52070900803929090410408220338887

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile


title: 89_52070900803929090410408220338886

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile


title: genomic DNA from human muscle of subject S11a15a92

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis


title: genomic DNA from human muscle of subject S11a15cd2

description: genomic DNA from human muscle tissue


title: 88_52070900803929090410408220338885

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human muscle of subject S11a16122

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation


title: Genomic DNA from cord blood leukocytes C221

tag: batch

tag: education

tag: smoker

tag: alcohol

tag: children

tag: bw/ga

tag: height

tag: placenta weight

tag: head circumference

tag: sg

tag: ias

tag: mas

tag: dmas

tag: sum


title: genomic DNA from human muscle of subject S11a15972

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: fibrosis


title: genomic DNA from human muscle of subject S11a15692

description: genomic DNA from human muscle tissue

tag: liversteatosis

tag: liverinflammation


title: genomic DNA from human muscle of subject S11a15a62

description: genomic DNA from human muscle tissue


title: genomic DNA from human muscle of subject S11a154c2

description: genomic DNA from human muscle tissue


title: genomic DNA from human muscle of subject S11a15412

description: genomic DNA from human muscle tissue


title: 87_52070900803929090410408220338880

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 83_52070900786089090410408220741439

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile


title: 84_52070900803929090410408220338872

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile


title: 85_52070900803929090410408220338878

value: Lymph node

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile


title: 86_52070900803929090410408220338879

value: Basal

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile


title: 95_52070900803929090410408220338898

value: Liver

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 82_52070900786089090410408220741437

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile


title: genomic DNA from human muscle of subject S11a15322

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis


title: genomic DNA from human muscle of subject S11a15c62

description: genomic DNA from human muscle tissue


title: genomic DNA from human muscle of subject S11a15152

description: genomic DNA from human muscle tissue


title: genomic DNA from human muscle of subject S11a15102

description: genomic DNA from human muscle tissue


title: 81_52070900786089090410408220741435

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile


title: genomic DNA from human muscle of subject S11a14e52

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation


title: genomic DNA from human muscle of subject S11a14ee2

description: genomic DNA from human muscle tissue

tag: fibrosis


title: genomic DNA from human muscle of subject S11a15522

description: genomic DNA from human muscle tissue


title: 80_52070900786089090410408220741432

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: pik3ca module tertile


title: genomic DNA from human muscle of subject S11a14cf2

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation


title: genomic DNA from human muscle of subject S11a14d82

description: genomic DNA from human muscle tissue

tag: fibrosis


title: 79_52070900786089090410408220741429

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile


title: 76_52070900786089090410408220741417

value: Skin

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: pik3ca module tertile


title: genomic DNA from human muscle of subject S11a14be2

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis


title: genomic DNA from human muscle of subject S11a14a32

description: genomic DNA from human muscle tissue


title: genomic DNA from human muscle of subject S11a14992

description: genomic DNA from human muscle tissue


title: genomic DNA from human muscle of subject S11a149c2

description: genomic DNA from human muscle tissue


title: 77_52070900786089090410408220741418

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile


title: 73_52070900786089090410408220741411

value: LumB

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: pik3ca module tertile


title: genomic DNA from human muscle of subject S11a14772

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis


title: 75_52070900786089090410408220741415

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile


title: 74_52070900786089090410408220741412

value: Other

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: pik3ca module tertile


title: 72_52070900786089090410408220741409

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile


title: 71_52070900786089090410408220741401

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile


title: 78_52070900786089090410408220741423

value: Breast

tag: stat1 module tertile

tag: casp3 module tertile

tag: igf1 module tertile

tag: src module tertile


title: genomic DNA from human liver of subject S11a17b12

description: genomic DNA from human liver tissue

source_name: Liver

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

value: PSC

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a17b22

description: genomic DNA from human liver tissue


title: 70_52070900786089090410408220741398

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 69_52070900786087090410408220741383

tag: sample type

tag: anatomical site

tag: igf1 module tertile

tag: src module tertile


title: 68_52070900786087090410408220741381

tag: pam50 subtype

value: Normal

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile


title: genomic DNA from human muscle of subject S11a14942

description: genomic DNA from human muscle tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: ageaccelerationresidual

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis


title: genomic DNA from human liver of subject S11a17aa2

description: genomic DNA from human liver tissue

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a17ab2

description: genomic DNA from human liver tissue


title: 65_52070900786087090410408220741374

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 64_52070900786087090410408220741373

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: aurka module tertile


title: 67_52070900786087090410408220741379

value: Skeleton

tag: esr1 module tertile

tag: erbb2 module tertile

tag: plau module tertile

tag: vegf module tertile


title: genomic DNA from human liver of subject S11a17b32

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a17ae2

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a17b02

description: genomic DNA from human liver tissue

value: female


title: 63_52070900786087090410408220741372

tag: sample type

tag: anatomical site

tag: pam50 subtype

value: LumA

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human liver of subject S11a17a92

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

value: AllPrep

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a17a62

description: genomic DNA from human liver tissue

value: male


title: 66_52070900786087090410408220741377

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: 60_52070900786087090410408220741366

tag: sample type

tag: anatomical site

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human liver of subject S11a17a72

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: 58_52070900786087090410408220741364

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: genomic DNA from human liver of subject S11a177c2

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

value: Control

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a17a82

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a17722

description: genomic DNA from human liver tissue

value: NAFLD

value: no


title: 54_52070900786087090410408220741358

tag: sample type

value: Fine-needle aspirate

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 56_52070900786087090410408220741360

tag: sample type

tag: anatomical site

tag: myc module tertile

tag: e2f3 module tertile


title: genomic DNA from human liver of subject S11a17af2

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a176a2

description: genomic DNA from human liver tissue

value: NASH


title: genomic DNA from human liver of subject S11a17502

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a175f2

description: genomic DNA from human liver tissue

value: yes


title: 57_52070900786087090410408220741363

tag: sample type

tag: anatomical site

value: Liver

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 61_52070900786087090410408220741368

tag: sample type

tag: anatomical site

tag: myc module tertile

tag: e2f3 module tertile


title: 53_52070900786087090410408220741357

value: Lymph node

tag: pam50 subtype

value: LumB

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile


title: genomic DNA from human liver of subject S11a17952

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a17672

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a175c2

description: genomic DNA from human liver tissue


title: 59_52070900786087090410408220741365

tag: sample type

tag: anatomical site

tag: pam50 subtype

value: Basal

tag: esr1 module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 55_52070900786087090410408220741359

tag: sample type

tag: anatomical site

value: Skin

tag: erbb2 module tertile

tag: aurka module tertile


title: 52_52070900786087090410408220741356

tag: pam50 subtype

tag: esr1 module tertile

tag: plau module tertile

tag: vegf module tertile


title: genomic DNA from human liver of subject S11a17342

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a16f92

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a17062

description: genomic DNA from human liver tissue


title: 50_52070900786087090410408220741354

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 49_52070900786087090410408220741352

tag: sample type

tag: anatomical site

value: Breast

tag: plau module tertile

tag: vegf module tertile


title: 51_52070900786087090410408220741355

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile


title: 62_52070900786087090410408220741371

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile


title: genomic DNA from human liver of subject S11a16692

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a17282

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a16962

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a17362

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a16ec2

description: genomic DNA from human liver tissue


title: 45_52070900786087090410408220741344

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 43_52070900786087090410408220741340

tag: sample type

tag: anatomical site

tag: ras module tertile

tag: mapk module tertile


title: 46_52070900786087090410408220741345

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile


title: 42_52070900786087090410408220741339

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile


title: 48_52070900786087090410408220741350

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile


title: 44_52070900786087090410408220741341

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human liver of subject S11a16502

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: 40_52070900786087090410408220741337

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: 41_52070900786087090410408220741338

tag: sample type

tag: anatomical site

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human liver of subject S11a16252

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a16232

description: genomic DNA from human liver tissue


title: 47_52070900786087090410408220741349

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: 39_52070900786087090410408220741335

tag: sample type

tag: anatomical site

tag: betac module tertile

tag: pik3ca module tertile


title: Human liver expression data from subject S11a17b32

description: Gene expression data from human liver tissue

data_processing:
RMA normalization with Bioconductor package oligo
Reported values are log2 RMA normalized gene level expression values from Bioconductor package oligo

source_name: liver tissue

label_protocol: labelled by biotin according to the manufacturers protocols

growth_protocol: liver biopsy

extract_protocol: For homogenisation of five to ten milligram frozen tissue and subsequent nucleic acid isolation, tubes with 1,4 mm ceramic beads (Precellys, Villeurbanne, France) and the AllPrep DNA/RNA Mini Kit (QIAGEN, Hilden, Germany) were used.

treatment_protocol: not applicable

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus

value: PSC


title: 37_52070900786105090510408220943472

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile


title: genomic DNA from human liver of subject S11a15e92

description: genomic DNA from human liver tissue

tag: dnamage

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a15fc2

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

value: female

tag: age

tag: bmi

tag: diseasestatus


title: 33_52070900803933090410408220339078

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: Human liver expression data from subject S11a17b12

hyb_protocol: according to the manufacturers protocols

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: 35_52070900803933090410408220339082

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: casp3 module tertile

tag: ras module tertile


title: 34_52070900803933090410408220339080

tag: vegf module tertile

tag: stat1 module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: genomic DNA from human liver of subject S11a15572

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: 36_52070900786100090510408220943425

tag: sample type

tag: anatomical site

tag: pam50 subtype

value: LumA

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human liver of subject S11a15c62

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

value: AllPrep

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: 32_52070900803933090410408220339076

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: Human liver expression data from subject S11a17b02

scan_protocol: according to the manufacturers protocols

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: genomic DNA from human liver of subject S11a155d2

description: genomic DNA from human liver tissue

value: male

tag: dnamage

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: Human liver expression data from subject S11a17b22


title: Human liver expression data from subject S11a17af2


title: genomic DNA from human liver of subject S11a157c2

description: genomic DNA from human liver tissue

value: Control


title: Human liver expression data from subject S11a17ae2


title: genomic DNA from human liver of subject S11a151c2

description: genomic DNA from human liver tissue


title: Human liver expression data from subject S11a17ab2


title: Human liver expression data from subject S11a17aa2


title: genomic DNA from human liver of subject S11a16572

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a17072

description: genomic DNA from human liver tissue

value: NAFLD


title: 30_52070900803933090410408220339074

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human liver of subject S11a150f2

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

value: HealthyObese

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: Human liver expression data from subject S11a17a82


title: Human liver expression data from subject S11a17a72


title: Human liver expression data from subject S11a17a62


title: genomic DNA from human liver of subject S11a162b2

description: genomic DNA from human liver tissue


title: Human liver expression data from subject S11a17952


title: Human liver expression data from subject S11a17722


title: genomic DNA from human liver of subject S11a14d42

description: genomic DNA from human liver tissue

value: PBC


title: 29_52070900803933090410408220339073

tag: sample type

value: Fine-needle aspirate

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: genomic DNA from human liver of subject S11a14ee2

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

value: no

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a14f02

description: genomic DNA from human liver tissue


title: Human liver expression data from subject S11a176a2

value: NASH


title: 28_52070900803933090410408220339072

tag: sample type

tag: anatomical site

value: Lymph node

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 38_52070900786105090510408220943498

tag: sample type

tag: anatomical site

value: LumB

tag: myc module tertile

tag: e2f3 module tertile


title: genomic DNA from human liver of subject S11a14992

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: Human liver expression data from subject S11a17672


title: genomic DNA from human liver of subject S11a14772

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a14452

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a14e52

description: genomic DNA from human liver tissue


title: Human liver expression data from subject S11a175f2

value: Normal Control


title: 27_52070900803933090410408220339071

tag: sample type

tag: anatomical site

value: Skin

tag: pam50 subtype

value: Normal

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human liver of subject S11a14482

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: Human liver expression data from subject S11a17502


title: Human liver expression data from subject S11a17282


title: Human liver expression data from subject S11a17a92

value: PSC


title: Human liver expression data from subject S11a17072


title: genomic DNA from human liver of subject S11a14f22

description: genomic DNA from human liver tissue

value: female


title: Human liver expression data from subject S11a175c2


title: 26_52070900803933090410408220339070

tag: sample type

tag: anatomical site

tag: pam50 subtype

value: Basal

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: genomic DNA from human liver of subject S11a142a2

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

value: AllPrep

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: 24_52070900803933090410408220339068

tag: sample type

tag: anatomical site

value: Liver

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: Human liver expression data from subject S11a16ec2

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: 22_52070900803933090410408220339065

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: 31_52070900803933090410408220339075

value: Skeleton

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile


title: genomic DNA from human liver of subject S11a13eb2

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

value: male

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

value: yes

tag: smokingpackyears


title: 23_52070900803933090410408220339067

tag: sample type

tag: anatomical site

tag: pam50 subtype

value: LumA

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: Human liver expression data from subject S11a17362

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus

value: NAFLD


title: Human liver expression data from subject S11a177c2


title: Human liver expression data from subject S11a17062


title: Human liver expression data from subject S11a16962


title: genomic DNA from human liver of subject S11a13c82

description: genomic DNA from human liver tissue

tag: dnamage

value: Control

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: Human liver expression data from subject S11a17342


title: Human liver expression data from subject S11a16f92


title: genomic DNA from human liver of subject S11a13c52

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a141b2

description: genomic DNA from human liver tissue

value: PBC


title: Human liver expression data from subject S11a165f2


title: Human liver expression data from subject S11a16692


title: Human liver expression data from subject S11a16602

value: Healthy Obese


title: Human liver expression data from subject S11a165d2

value: NASH


title: Human liver expression data from subject S11a165c2


title: Human liver expression data from subject S11a16502


title: 20_52070900803933090410408220339063

tag: sample type

value: Fine-needle aspirate

tag: anatomical site

tag: pam50 subtype

value: LumB

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: 21_52070900803933090410408220339064

tag: sample type

tag: anatomical site

tag: betac module tertile

tag: pik3ca module tertile


title: Human liver expression data from subject S11a164e2

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: Human liver expression data from subject S11a164a2


title: 19_52070900803933090410408220339061

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile


title: Human liver expression data from subject S11a162b2


title: Human liver expression data from subject S11a163b2


title: Human liver expression data from subject S11a16252

value: Normal Control


title: Human liver expression data from subject S11a16202


title: Human liver expression data from subject S11a161c2


title: 17_52070900803933090410408220339059

tag: sample type

tag: anatomical site

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: 18_52070900803933090410408220339060

tag: pam50 subtype

tag: esr1 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human liver of subject S11a13c32

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a13992

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a13962

description: genomic DNA from human liver tissue


title: Human liver expression data from subject S11a16122


title: 13_52070900803933090410408220339052

tag: sample type

tag: anatomical site

value: Lymph node

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: genomic DNA from human liver of subject S11a13c02

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

value: female

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: 16_52070900803933090410408220339057

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: Human liver expression data from subject S11a15fc2

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: genomic DNA from human liver of subject S11a121b2

description: genomic DNA from human liver tissue

tag: dnamage

value: HealthyObese

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

value: no

tag: smokingpackyears


title: 25_52070900803933090410408220339069

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: Human liver expression data from subject S11a15f82

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: Human liver expression data from subject S11a160a2


title: 15_52070900803933090410408220339056

tag: sample type

tag: anatomical site

value: Liver

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: Human liver expression data from subject S11a15ec2


title: Human liver expression data from subject S11a15e92


title: Human liver expression data from subject S11a15e82


title: 10_52070900803933090410408220339046

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile


title: Human liver expression data from subject S11a15e02

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: genomic DNA from human liver of subject S11a13f42

description: genomic DNA from human liver tissue

value: AllPrep

tag: dnamage

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a120c2

description: genomic DNA from human liver tissue

value: male

value: PSC


title: genomic DNA from human liver of subject S11a11a92

description: genomic DNA from human liver tissue


title: genomic DNA from human liver of subject S11a11f52

description: genomic DNA from human liver tissue


title: 11_52070900803933090410408220339050

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 9_52070900803933090410408220339044

tag: sample type

tag: anatomical site

value: Skin

value: LumA

tag: igf1 module tertile

tag: src module tertile


title: Human liver expression data from subject S11a15df2

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: Human liver expression data from subject S11a15d72


title: genomic DNA from human liver of subject S11a11b22

description: genomic DNA from human liver tissue

tag: dnamage

value: Control

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: Human liver expression data from subject S11a15c92


title: Human liver expression data from subject S11a15c62

value: NAFLD


title: Human liver expression data from subject S11a15be2


title: Human liver expression data from subject S11a15b12

value: Healthy Obese


title: Human liver expression data from subject S11a15af2

value: NASH


title: Human liver expression data from subject S11a15c52


title: Human liver expression data from subject S11a15a92


title: Human liver expression data from subject S11a15a62


title: genomic DNA from human liver of subject S11a115d2

description: genomic DNA from human liver tissue


title: Human liver expression data from subject S11a15972


title: genomic DNA from human liver of subject S11a11622

description: genomic DNA from human liver tissue

value: PBC


title: 7_52070900803933090410408220339041

tag: sample type

value: Fine-needle aspirate

tag: anatomical site

tag: pam50 subtype

value: LumB

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: genomic DNA from human liver of subject S11a11592

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

value: occasionally

tag: smokingpackyears


title: Human liver expression data from subject S11a157f2


title: Human liver expression data from subject S11a157c2

value: female

value: Normal Control


title: 3_52070900803933090410408220339036

tag: sample type

tag: anatomical site

value: Breast

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: 6_52070900803933090410408220339040

tag: sample type

tag: anatomical site

tag: betac module tertile

tag: pik3ca module tertile


title: 5_52070900803933090410408220339038

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile


title: 8_52070900803933090410408220339042

value: Lymph node

value: Basal

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile


title: Human liver expression data from subject S11a15952

tag: subjectid

tag: Sex

value: male

tag: age

tag: bmi

tag: diseasestatus


title: Human liver expression data from subject S11a15762


title: 14_52070900803933090410408220339053

tag: sample type

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile


title: Human liver expression data from subject S11a16232


title: Human liver expression data from subject S11a15692


title: 4_52070900803933090410408220339037

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: Human liver expression data from subject S11a155d2

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: Human liver expression data from subject S11a15732


title: genomic DNA from human liver of subject S11a113c2

description: genomic DNA from human liver tissue

value: AllPrep

tag: dnamage

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

value: no

tag: smokingpackyears


title: Human liver expression data from subject S11a15522


title: Human liver expression data from subject S11a15572


title: Human liver expression data from subject S11a154c2


title: KU_18N

tag: gender

value: M

tag: disease state

value: hepatocellular carcinoma (HCC)

tag: tissue

value: non-tumor


title: Human liver expression data from subject S11a15412

tag: subjectid

value: Healthy Obese


title: 2_52070900803933090410408220339035

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: 1_52070900803933090410408220339034

tag: sample type

tag: anatomical site

tag: pam50 subtype

tag: esr1 module tertile


title: genomic DNA from human liver of subject S11a11342

description: genomic DNA from human liver tissue

tag: subjectid

tag: Sex

tag: age

tag: dnamage

tag: bmi

tag: diseasestatus

value: Control

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: Human liver expression data from subject S11a153b2


title: genomic DNA from human liver of subject S11a11452

description: genomic DNA from human liver tissue


title: Human liver expression data from subject S11a15372


title: genomic DNA from human liver of subject S11a10f02

description: genomic DNA from human liver tissue


title: 12_52070900803933090410408220339051

tag: sample type

tag: anatomical site

tag: erbb2 module tertile

tag: aurka module tertile

tag: plau module tertile

tag: vegf module tertile

tag: stat1 module tertile

tag: casp3 module tertile

tag: ras module tertile

tag: mapk module tertile

tag: pten module tertile

tag: akt/mtor module tertile

tag: igf1 module tertile

tag: src module tertile

tag: myc module tertile

tag: e2f3 module tertile

tag: betac module tertile

tag: pik3ca module tertile


title: Human liver expression data from subject S11a15222

tag: subjectid

tag: Sex

tag: age

tag: bmi

tag: diseasestatus


title: Human liver expression data from subject S11a15322


title: genomic DNA from human liver of subject S11a114f2

description: genomic DNA from human liver tissue

tag: dnamage

value: PSC

tag: nafldactivityscore

tag: liversteatosis

tag: liverinflammation

tag: fibrosis

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender

tag: smokingstatus

tag: smokingpackyears


title: genomic DNA from human liver of subject S11a112b2

description: genomic DNA from human liver tissue

value: PBC


title: KU_17N

tag: gender

tag: disease state

tag: tissue


title: Human liver expression data from subject S11a15152

tag: subjectid

value: NAFLD


title: Human liver expression data from subject S11a15102

tag: Sex


title: Human liver expression data from subject S11a151c2

tag: age


title: KU_14N


title: Human liver expression data from subject S11a150f2

tag: bmi


title: KU_15N


title: Human liver expression data from subject S11a150d2

tag: diseasestatus


title: Human liver expression data from subject S11a14f22


title: genomic DNA from human liver of subject S11a10882

description: genomic DNA from human liver tissue

tag: dnamage


title: KU_16N


title: KU_12N


title: KU_13N


title: Human liver expression data from subject S11a14f02


title: Human liver expression data from subject S11a14ee2


title: genomic DNA from human adipose of subject S11a18112

description: genomic DNA from human adipose tissue

source_name: Adipose

tag: ageaccelerationresidual

tag: nafldactivityscore


title: KU_11N


title: genomic DNA from human liver of subject S11a10bf2

description: genomic DNA from human liver tissue

tag: liversteatosis

tag: liverinflammation


title: genomic DNA from human adipose of subject S11a179d2

description: genomic DNA from human adipose tissue

tag: fibrosis


title: genomic DNA from human liver of subject S11a11972

description: genomic DNA from human liver tissue

tag: dnamageadjustedagebmi

tag: dnamageadjustedagebmigender


title: Human liver expression data from subject S11a14d42


title: Human liver expression data from subject S11a14cf2


title: genomic DNA from human adipose of subject S11a16ec2

description: genomic DNA from human adipose tissue


title: genomic DNA from human adipose of subject S11a17ac2

description: genomic DNA from human adipose tissue


title: KU_10N


title: Human liver expression data from subject S11a14d82

value: NASH


title: Human liver expression data from subject S11a14be2

value: female


title: genomic DNA from human liver of subject S11a10bc2

description: genomic DNA from human liver tissue

tag: smokingstatus

tag: smokingpackyears


title: Human liver expression data from subject S11a14b82


title: Human liver expression data from subject S11a14992


title: Human liver expression data from subject S11a149c2


title: genomic DNA from human adipose of subject S11aNA2 (2)

description: genomic DNA from human adipose tissue


title: genomic DNA from human adipose of subject S11a16f32

description: genomic DNA from human adipose tissue


title: Human liver expression data from subject S11a14942


title: Human liver expression data from subject S11a14a62


title: Human liver expression data from subject S11a14822


title: KU_08N

tag: gender

value: F

tag: disease state


title: Human liver expression data from subject S11a14482

tag: subjectid


title: Human liver expression data from subject S11a14772

tag: Sex


title: KU_09N

tag: age

tag: tissue


title: Human liver expression data from subject S11a14452

tag: bmi

tag: diseasestatus

value: Normal Control


title: Human liver expression data from subject S11a141b2


title: Human liver expression data from subject S11a140e2


title: genomic DNA from human adipose of subject S11a15cd2

description: genomic DNA from human adipose tissue

tag: dnamage

tag: ageaccelerationresidual

value: HealthyObese


title: genomic DNA from human adipose of subject S11a15d72

description: genomic DNA from human adipose tissue

tag: nafldactivityscore

tag: liversteatosis


title: Human liver expression data from subject S11a140b2


title: KU_04N


title: genomic DNA from human adipose of subject S11a15c82

description: genomic DNA from human adipose tissue

tag: liverinflammation

tag: fibrosis


title: Human liver expression data from subject S11a13fa2


title: KU_02N


title: KU_03N


title: genomic DNA from human adipose of subject S11a164e2

description: genomic DNA from human adipose tissue


title: genomic DNA from human adipose of subject S11a15c62

description: genomic DNA from human adipose tissue


title: genomic DNA from human adipose of subject S11a15b12

description: genomic DNA from human adipose tissue


title: Human liver expression data from subject S11a13eb2


title: KU_07N


title: Human liver expression data from subject S11a13e52


title: KU_06N


title: Human liver expression data from subject S11a13c82


title: genomic DNA from human adipose of subject S11a15a92

description: genomic DNA from human adipose tissue


title: Human liver expression data from subject S11a142a2


title: Human liver expression data from subject S11a13c52


title: Human liver expression data from subject S11a13c32


title: KU_05N


title: KU_01N


title: KM_079N


title: genomic DNA from human adipose of subject S11a162b2

description: genomic DNA from human adipose tissue


title: genomic DNA from human adipose of subject S11a15a62

description: genomic DNA from human adipose tissue


title: Human liver expression data from subject S11a13c02


title: Human liver expression data from subject S11a13992


title: Human liver expression data from subject S11a13962


title: Human liver expression data from subject S11a12292


title: genomic DNA from human adipose of subject S11a15522

description: genomic DNA from human adipose tissue


title: KM_103N


title: genomic DNA from human adipose of subject S11a15972

description: genomic DNA from human adipose tissue


title: KM_076N


title: genomic DNA from human adipose of subject S11a15692

description: genomic DNA from human adipose tissue


title: KM_075N


title: Human liver expression data from subject S11a120c2


title: Human liver expression data from subject S11a11f62


title: Human liver expression data from subject S11a121b2


title: Human liver expression data from subject S11a11f52


title: Human liver expression data from subject S11a11b22


title: Human liver expression data from subject S11a11a92


title: genomic DNA from human adipose of subject S11a154c2

description: genomic DNA from human adipose tissue


title: genomic DNA from human adipose of subject S11a15412

description: genomic DNA from human adipose tissue


title: Human liver expression data from subject S11a11792


title: KM_069N


title: Human liver expression data from subject S11a11622


title: KM_066N


title: KM_065N


title: Human liver expression data from subject S11a115d2


title: Human liver expression data from subject S11a119f2


title: Human liver expression data from subject S11a11592


title: genomic DNA from human adipose of subject S11a15322

description: genomic DNA from human adipose tissue


title: KM_057N


title: Human liver expression data from subject S11a11972


title: Human liver expression data from subject S11a114f2


title: KM_056N


title: Human liver expression data from subject S11a11452


title: genomic DNA from human adipose of subject S11a15152

description: genomic DNA from human adipose tissue


title: genomic DNA from human adipose of subject S11a15102

description: genomic DNA from human adipose tissue


title: KM_053N


title: KM_051N


title: KM_049N


title: KM_050N


title: Human liver expression data from subject S11a113c2


title: Human liver expression data from subject S11a10f02


title: Human liver expression data from subject S11a10c52


title: Human liver expression data from subject S11a10bf2


title: Human liver expression data from subject S11a112b2


title: Human liver expression data from subject S11a11422


title: Human liver expression data from subject S11a13f42


title: Human liver expression data from subject S11a10882


title: genomic DNA from human adipose of subject S11a14ee2

description: genomic DNA from human adipose tissue


title: genomic DNA from human adipose of subject S11a14e52

description: genomic DNA from human adipose tissue


title: KM_028N


title: genomic DNA from human adipose of subject S11a14d82

description: genomic DNA from human adipose tissue


title: KM_025N


title: genomic DNA from human adipose of subject S11aNA2

description: genomic DNA from human adipose tissue


title: KM_032N


title: Premium RNA, cerebellum

city: Kurashiki

first: Hiroyuki

last: Kamao

state: Okayama

address: 577 Matsushima

department: Ophthalmology

institute: Kawasaki Medical School

description: Gene expression data form human cerebellum

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45℃, washed, and stained on GeneChip® Hybridization, Wash and Stain Kit.

scan_protocol: GeneChips were scanned using the Scanner 3000 7G.

data_processing: The data were analyzed with RMA (Rafael A, et al, 2003) algorithm in the R/Bioconductor (http://www.bioconductor.org/) package using Affymetrix default analysis settings and global scaling as normalization method.

source_name: cerebellum

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (0.05ug/ul) (3' IVT Express Kit).

growth_protocol: Selected tissues were incubated in each medium at 37℃.

treatment_protocol: Selected tissues were rinsed with PBS with 0,7% NaCl, 0,04% triton-X100 and placed on ice in the Trizol solution (Invitrogen).

tag: source

value: cerebellum

tag: generation method

value: purchased from Clontech Laboratories, Inc.


title: genomic DNA from human adipose of subject S11a14be2

description: genomic DNA from human adipose tissue

value: AllPrep


title: KM_015N


title: Premium RNA, melanocyte

description: Gene expression data form human melanocyte

source_name: melanocyte

value: melanocyte

value: purchased from Cell Applications, Inc,


title: Human liver expression data from subject S11a108b2


title: KM_012N

value: hepatocellular carcinoma (HCC)


title: genomic DNA from human adipose of subject S11a14cf2

description: genomic DNA from human adipose tissue


title: KM_009N

value: M

value: non-tumor


title: Premium RNA, retina

description: Gene expression data form human retina

source_name: retina

value: retina


title: fibroblast, K32

description: Gene expression data form human fibroblast (K32)

source_name: human fibroblast

value: RP patient (K32)

value: skin


title: KM_019N


title: genomic DNA from human adipose of subject S11a14992

description: genomic DNA from human adipose tissue

value: NAFLD


title: genomic DNA from human adipose of subject S11a14772

description: genomic DNA from human adipose tissue

value: male


title: fibroblast, 59

description: Gene expression data form human fibroblast (59)

value: RP patient (59)


title: genomic DNA from human adipose of subject S11a14942

description: genomic DNA from human adipose tissue

value: female


title: fibroblast, 101

description: Gene expression data form human fibroblast (101)

value: RP patient (101)


title: genomic DNA from whole blood of HIV+ man 120

description: SAMPLE 120

data_processing: BeadStudio software v3.2. The non_normalized.txt contains unmethylated and methylated signal intensities.

source_name: whole blood

growth_protocol: Fresh frozen blood

extract_protocol: genomic DNA was extracted and purified from fresh frozen tissue using Qiagen DNeasy Kit according to standard instructions

value: whole blood

tag: age (yrs)

tag: hivstatus

value: positve

tag: logviralloadadjustedforage

tag: lymphocytesperc

tag: whitebloodcellperc

tag: granulocyteperc

tag: monocytesperc

tag: lymphocyteabscount

tag: stripe


title: genomic DNA from whole blood of HIV+ man 119

description: SAMPLE 119

tag: gender

tag: tissue

tag: dnamage

tag: bmi


title: genomic DNA from whole blood of HIV+ man 118

description: SAMPLE 118


title: KM_008N

tag: age

tag: disease state


title: fibroblast, K11

description: Gene expression data form human fibroblast (K11)

tag: source

value: RP patient (K11)


title: KM_001N

value: F


title: genomic DNA from whole blood of HIV+ man 116

description: SAMPLE 116


title: genomic DNA from whole blood of HIV+ man 117

description: SAMPLE 117


title: KU_50T

source_name: HCC tumor

value: tumor


title: hiPSCs, 59SV9 rep2

description: Gene expression data form hiPSCs (59SV9, Sendai virous)

source_name: hiPSCs

tag: generation method

value: Sendai virous (iPSCs from fibroblast)


title: fibroblast, K31

description: Gene expression data form human fibroblast (K31)

value: RP patient (K31)


title: hiPSCs, 59SV3

description: Gene expression data form hiPSCs (59SV3, Sendai virous)


title: KU_49T

value: M

value: hepatocellular carcinoma (HCC)


title: fibroblast, K10

description: Gene expression data form human fibroblast (K10)

value: RP patient (K10)


title: KU_48T


title: fibroblast, K21

description: Gene expression data form human fibroblast (K21)

value: RP patient (K21)


title: hiPSCs, K31M28 rep2

description: Gene expression data form hiPSCs (K31M28, retorvirous)

value: retrovirous (iPSCs from fibroblast)


title: hiPSCs, 59SV4

description: Gene expression data form hiPSCs (59SV4, Sendai virous)


title: hiPSCs, 59SV9 rep1


title: hiPSCs, K31M28 rep1


title: genomic DNA from whole blood of HIV+ man 115

description: SAMPLE 115

tag: age (yrs)


title: hiPSCs, 59M8

description: Gene expression data form hiPSCs (59M8, retorvirous)


title: KU_47T

description: To export gene expression data based on unique genes, we used the Sample Gene Profile option of Illumina BeadStudio software. All 47231 probes on the Human-12 BeadChip ver.4 were used.


title: hiPSCs, K21S4 rep2

description: Gene expression data form hiPSCs (K21S4, retorvirous)


title: genomic DNA from whole blood of HIV+ man 112

description: SAMPLE 112

tag: hivstatus


title: KU_45T


title: KU_46T


title: KU_43T


title: KU_42T


title: genomic DNA from whole blood of HIV+ man 110

description: SAMPLE 110

tag: logviralloadadjustedforage


title: ARPE19

description: Gene expression data form hRPE (cell line)

source_name: RPE cell line

value: RPE cell line

tag: cell line


title: h-RPE1 (lot-0F3237, Lonza)

description: Gene expression data form hRPE (fetal)

source_name: human fetal RPE

value: fetal RPE

value: purchased from Lonza Group Ltd.