title: Neuroblastoma 39 (INES-44)

status: Public on Dec 13 2011

city: PARIS

first: Gudrun

last: Schleiermacher

address: 26 rue d'Ulm

department: Department of Pediatric Oncology

country: France

institute: Institut Curie

hyb_protocol: After ethanol-coprecipitation with Human Cot-1 DNA (Invitrogen, Cergy-Pontoise, France), resuspension in hybridization buffer (50% formamide), denaturation at 95°C for 10 minutes and prehybridization at 37°C for 90 minutes, probes were cohybridized on aCGH (BAC/PAC non-commercial arrays: Platform GPL9715) or NimbleGen 4x72K arrays (commercial arrays: GPL8971). The aCGH slide was previously preblocked with a buffer containing 2.6mg succinic anhydride/118ml N-methyl-2-pyrrolidinone/32ml sodium tetraborate decahydrate, pH 8.0 (Sigma-Aldrich, Lyon, France).

scan_protocol: After washing, arrays were scanned using a 4000B scanner (Axon, Union City, CA). Image analysis was performed first with GenePix software (Axon) (firstly with version 5.1 and then with the 6.0.1.27 when it was available), and ratios of Cy5/Cy3 signals were determined.

data_processing: Tumors were classified into two groups: those with numerical alterations only or those with any segmental chromosome change. The overall images of the genomic profiles on which the genomic classifications in the manuscript are based are included in 'GSE26494_GenomicProfiles.pdf', which is linked to the Series GSE26494 record as a supplementary file.

source_name: Tumor DNA

label_protocol: After digestion with DPNII (Ozyme, Saint Quentin en Yvelines, France) and column purification (Qiaquick PCR purification kit; Qiagen, Courtaboeuf, France), tumor DNAs were labeled by the random priming method (Bioprime DNA labelling system; Invitrogen, Cergy-Pontoise, France) with Cyanine-5 (Perkin-Elmer, Wellesley, MA). Using the same procedure, control DNAs were with Cyanine-3.

extract_protocol: DNAs were extracted from frozen tumors using a standard phenol-chloroform procedure.

treatment_protocol: Samples of neuroblastoma obtained at diagnosis were flash frozen and stored at –80°C. All tumor samples contained >50% cancer cells.

value: neuroblastoma

tag: tumor stage

value: localized, unresectable

value: female

tag: age at diagnosis (months)

tag: tumor localization

value: thoracic (THO)

tag: metastases

value: no

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: cns metastasis

tag: bone metastasis

tag: relapse/progression

tag: time from diagnosis to event or last follow-up  (months)

tag: patient status

value: alive

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

value: numerical chromosome alteration (NCA)

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

source_name: Normal reference DNA

value: blood

tag: disease state

value: healthy


title: Neuroblastoma 32 (INES-37)

type: genomic

molecule: genomic DNA

organism: Homo sapiens

tag: tissue

tag: tumor stage

value: INSS 4s

tag: gender

tag: age at diagnosis (months)

tag: tumor localization

value: adrenal (ADR)

tag: metastases

value: yes

tag: bone marrow metastasis


title: Neuroblastoma 35 (INES-40)

tag: liver metastasis

tag: cutaneous metastasis

tag: cns metastasis

tag: bone metastasis

tag: relapse/progression

tag: time from diagnosis to event or last follow-up  (months)

tag: patient status


title: Biofilm WT1-10mM sucrose

status: Public on Sep 01 2012

type: RNA

city: Miami

first: Dragana

last: Ajdic

state: Florid

address: 1600 NW 10th Ave, RMSB 2023

department: Dermatology

country: USA

institute: University of Miami

description: Gene transcription data from 48h biofilm

hyb_protocol: Following fragmentation, 3 ug of cDNA were hybridized for 16 hr at 47C on GeneChip S. mutans Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using a laser scanner 7G (Affymetrix)

data_processing: Data were analyzed with Gene Chip Operating Software version 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as normalization method.

label: biotin

molecule: total RNA

organism: Streptococcus mutans UA159

source_name: Biofilm WT1-10mM sucrose

label_protocol: Biotinylated cDNA was prepared according to the standard Affymetrix protocol.

growth_protocol: Cells were grown in defined medium with specific sugars (sucrose, glucose or nigerose). Planktonic and aggregarion cultures were grown to mid-log (OD600=0.6) phase in 0.5% sugar. Biofilm cultures were grown for 48h in 10 mM sugar.

extract_protocol: Extraction of total RNA was performed using Ambion RiboPure Bacteria kit according to the manufacturers protocol.

treatment_protocol: Cells were harvested by centrifugation lysed using beat-beater.

tag: genotype

value: wild type

tag: treatment

value: 10mM sucrose

tag: genetic background

tag: cell type

value: biofilm cells


title: Aggregation gtfBC2 0.5% sucrose

description: Gene transcription data from aggregation culture OD600=0.6

source_name: Aggregation gtfBC2 0.5% sucrose

value: 0.5% sucrose

value: aggregation cells


title: Biofilm WT3-10mM sucrose

source_name: Biofilm WT3-10mM sucrose


title: Biofilm WT4-10mM sucrose

source_name: Biofilm WT4-10mM sucrose


title: Neuroblastoma 248 (INES-285)

status: Public on Dec 07 2011

data_processing: Background-subtracted data obtained from log2 of processed Red signal/processed Green signal values generated by the MANOR (Micro-Array NORmalization) algorithm (Neuvial P. et al., 2006), and missing data were interpolated within each array.

tag: tissue

value: neuroblastoma

tag: tumor stage

tag: time from diagnosis to event or last follow-up (months)

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 242 (INES-275)

value: INSS 4

tag: gender

tag: age at diagnosis (months)

tag: tumor localization

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: cns metastasis

tag: bone metastasis

tag: relapse/progression

tag: patient status


title: Neuroblastoma 243 (INES-277)

tag: tissue

tag: tumor stage

value: male

tag: time from diagnosis to event or last follow-up (months)

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)


title: Neuroblastoma 240 (INES-273)

value: localized, unresectable

tag: gender

tag: age at diagnosis (months)

value: no alterations

tag: 17q status (1=17q gain; 0=normal; 9=silent)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 239 (INES-272)

tag: metastases

value: no

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: cns metastasis

tag: bone metastasis

value: alive


title: Neuroblastoma 238 (INES-271)

tag: tissue

tag: tumor stage

tag: tumor localization

value: cervical (CER)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: time from diagnosis to death or last follow up (months)

value: numerical chromosome alteration (NCA)

value: blood


title: Neuroblastoma 235 (INES-268)

tag: gender

tag: age at diagnosis (months)

value: thoracic (THO)

tag: genomic profile

value: segmental chromosome alteration (SCA)

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 234 (INES-266)

value: adrenal (ADR)

tag: metastases

value: yes

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

value: dead

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 233 (INES-265)

tag: tissue

tag: tumor stage

value: INSS 4s

tag: tumor localization

value: adrenal (ADR)/abdominal (ADR)

tag: cns metastasis

tag: bone metastasis

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)


title: Neuroblastoma 237 (INES-270)

value: neuroblastoma

tag: gender

tag: age at diagnosis (months)

value: abdominal (ADR)

tag: patient status

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)


title: Neuroblastoma 229 (INES-260)

value: localized, unresectable

value: male

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: 17q status (1=17q gain; 0=normal; 9=silent)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 228 (INES-259)

tag: tissue

tag: tumor stage

value: female

tag: tumor localization

value: no

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 230 (INES-261)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: alive

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile


title: Neuroblastoma 226 (INES-257)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 227 (INES-258)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 225 (INES-255)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: numerical chromosome alteration (NCA)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 219 (INES-247)

value: INSS 4

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 222 (INES-252)

tag: tissue

tag: tumor stage

tag: tumor localization

value: cervical (CER)/thoracic (THO)

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 224 (INES-254)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: segmental chromosome alteration (SCA)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 218 (INES-245)

value: adrenal (ADR)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 217 (INES-244)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 211 (INES-238)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 201 (INES-228)

value: thoracic (THO)

tag: metastases

value: yes

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 212 (INES-239)

tag: tissue

tag: tumor stage

value: INSS 4s

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 215 (INES-242)

value: neuroblastoma

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 200 (INES-227)

value: abdominal (ADR)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 214 (INES-241)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 223 (INES-253)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 231 (INES-262)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 194 (INES-220)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 195 (INES-222)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: no alterations

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 198 (INES-225)

value: male

value: NO (no primary tumor; metastatic neuroblastoma obtained)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 197 (INES-224)

tag: tissue

tag: tumor stage

tag: tumor localization

value: no

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 193 (INES-219)

value: localized, unresectable

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: alive

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 188 (INES-214)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 189 (INES-215)

tag: tissue

tag: tumor stage

value: female

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

value: numerical chromosome alteration (NCA)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 186 (INES-212)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 190 (INES-216)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

value: segmental chromosome alteration (SCA)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 185 (INES-211)

tag: tissue

tag: tumor stage

value: INSS 4

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 180 (INES-206)

tag: gender

tag: age at diagnosis (months)

value: adrenal (ADR)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 184 (INES-210)

tag: metastases

value: yes

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 178 (INES-204)

tag: tissue

tag: tumor stage

tag: tumor localization

value: pelvic (PEL)

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 177 (INES-203)

value: neuroblastoma

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 171 (INES-197)

value: INSS 4s

value: thoracic (THO)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 176 (INES-202)

tag: tissue

tag: tumor stage

tag: tumor localization

value: abdominal (ADR)

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 175 (INES-201)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 174 (INES-200)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

value: no alterations

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 170 (INES-196)

tag: tissue

tag: tumor stage

tag: tumor localization

value: no

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 173 (INES-199)

value: localized, unresectable

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 172 (INES-198)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

value: dead

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 169 (INES-195)

tag: tissue

tag: tumor stage

value: female

tag: tumor localization

value: NO (no primary tumor; metastatic neuroblastoma obtained)

tag: cns metastasis

tag: bone metastasis

value: alive

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 166 (INES-192)

tag: gender

value: male

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: segmental chromosome alteration (SCA)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

value: blood

tag: disease state


title: Neuroblastoma 167 (INES-193)

value: INSS 4

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 187 (INES-213)

tag: tissue

tag: tumor stage

tag: tumor localization

value: adrenal (ADR)

value: yes

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 165 (INES-191)

value: neuroblastoma

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 183 (INES-209)

value: INSS 4s

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

value: numerical chromosome alteration (NCA)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 196 (INES-223)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 179 (INES-205)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 163 (INES-188)

value: thoracic (THO)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 162 (INES-187)

tag: tissue

tag: tumor stage

tag: tumor localization

value: abdominal (ADR)

value: no

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 161 (INES-186)

value: localized, unresectable

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 168 (INES-194)

value: female

value: cervical (CER)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 157 (INES-182)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

value: alive

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 159 (INES-184)

tag: gender

value: male

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 160 (INES-185)

value: cervical (CER)/thoracic (THO)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 146 (INES-169)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 155 (INES-180)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 148 (INES-171)

value: INSS 4

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

value: segmental chromosome alteration (SCA)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 156 (INES-181)

tag: tissue

tag: tumor stage

tag: tumor localization

value: adrenal (ADR)

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 144 (INES-166)

value: neuroblastoma

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

value: yes

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 151 (INES-175)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

value: numerical chromosome alteration (NCA)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 152 (INES-176)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 154 (INES-179)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 143 (INES-165)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 139 (INES-160)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 137 (INES-158)

value: INSS 4s

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 138 (INES-159)

value: pelvic (PEL)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 150 (INES-174)

tag: tissue

tag: tumor stage

tag: tumor localization

value: abdominal (ADR)

value: no

tag: cns metastasis

tag: bone metastasis

value: no alterations

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 145 (INES-167)

value: localized, unresectable

tag: gender

value: female

tag: age at diagnosis (months)

value: abdominal (ADR)/pelvic (PEL)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 134 (INES-154)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

value: alive

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 136 (INES-156)

tag: tissue

tag: tumor stage

value: male

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 135 (INES-155)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 149 (INES-172)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 131 (INES-151)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

value: segmental chromosome alteration (SCA)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 133 (INES-153)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 132 (INES-152)

value: adrenal (ADR)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 147 (INES-170)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 128 (INES-148)

value: neuroblastoma

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 129 (INES-149)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 130 (INES-150)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 141 (INES-162)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 140 (INES-161)

value: thoracic (THO)

tag: metastases

value: yes

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 125 (INES-145)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

value: numerical chromosome alteration (NCA)

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 124 (INES-144)

tag: gender

tag: age at diagnosis (months)

value: thoracic (THO)/abdominal (ADR)/adrenal (ADR)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 121 (INES-141)

value: INSS 4s

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

value: dead

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 120 (INES-140)

tag: tissue

tag: tumor stage

tag: tumor localization

value: abdominal (ADR)

value: no

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 123 (INES-143)

value: localized, unresectable

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 117 (INES-133)

value: INSS 4

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 113 (INES-128)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

value: alive

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 118 (INES-136)

tag: gender

value: female

tag: age at diagnosis (months)

value: thoracic (THO)/adrenal (ADR)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 115 (INES-130)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 116 (INES-132)

tag: tissue

tag: tumor stage

tag: tumor localization

value: adrenal (ADR)

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 119 (INES-139)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 111 (INES-126)

value: neuroblastoma

value: male

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 109 (INES-124)

tag: tissue

tag: tumor stage

tag: tumor localization

value: yes

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

value: segmental chromosome alteration (SCA)

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 110 (INES-125)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: numerical chromosome alteration (NCA)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 112 (INES-127)

value: cervical (CER)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 114 (INES-129)

tag: tissue

tag: tumor stage

value: INSS 4s

tag: tumor localization

value: pelvic (PEL)V

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 107 (INES-121)

tag: gender

tag: age at diagnosis (months)

value: no

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 108 (INES-123)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 288 (INES-331)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

value: no alterations

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 106 (INES-120)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 284 (INES-325)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 280 (INES-321)

tag: tissue

tag: tumor stage

value: INSS 4

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 279 (INES-320)

value: localized, unresectable

tag: gender

tag: age at diagnosis (months)

value: abdominal (ADR)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: alive

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 105 (INES-119)

value: female

value: thoracic (THO)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

value: blood

tag: disease state


title: Neuroblastoma 290 (INES-337)

tag: tissue

value: neuroblastoma

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 295 (INES-342)

tag: gender

tag: age at diagnosis (months)

value: adrenal (ADR)

value: yes

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 276 (INES-317)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

value: numerical chromosome alteration (NCA)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 100 (INES-114)

tag: tissue

tag: tumor stage

value: male

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 101 (INES-115)

value: INSS 4s

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

value: segmental chromosome alteration (SCA)

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 103 (INES-117)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

value: no

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 99 (INES-113)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 95 (INES-106)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 275 (INES-316)

value: pelvic (PEL)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 98 (INES-112)

tag: tissue

tag: tumor stage

tag: tumor localization

value: NO (no primary tumor; metastatic neuroblastoma obtained)

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 291 (INES-338)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 272 (INES-312)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 97 (INES-110)

tag: tissue

tag: tumor stage

value: INSS 4

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 273 (INES-314)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 270 (INES-310)

value: localized, unresectable

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 93 (INES-104)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

value: alive

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 94 (INES-105)

tag: gender

value: female

tag: age at diagnosis (months)

value: thoracic (THO)/adrenal (ADR)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 91 (INES-102)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 274 (INES-315)

tag: tissue

value: neuroblastoma

tag: tumor stage

tag: tumor localization

value: thoracic (THO)/abdominal (ADR)

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 89 (INES-100)

tag: gender

tag: age at diagnosis (months)

value: adrenal (ADR)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state

value: healthy


title: Neuroblastoma 266 (INES-304)

tag: metastases

value: yes

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

value: numerical chromosome alteration (NCA)

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 268 (INES-308)

tag: tissue

tag: tumor stage

value: INSS 4s

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 263 (INES-301)

tag: gender

tag: age at diagnosis (months)

value: cervical (CER)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 92 (INES-103)

value: cervical (CER)/thoracic (THO)

tag: metastases

value: no

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 265 (INES-303)

tag: tissue

tag: tumor stage

value: male

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

value: segmental chromosome alteration (SCA)

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 261 (INES-299)

value: INSS 4

tag: gender

tag: age at diagnosis (months)

value: pelvic (PEL)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 84 (INES-95)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

value: alive

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 88 (INES-99)

tag: tissue

tag: tumor stage

value: localized, unresectable

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 86 (INES-97)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 87 (INES-98)

value: neuroblastoma

value: abdominal (ADR)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 260 (INES-298)

tag: tissue

tag: tumor stage

tag: tumor localization

value: adrenal (ADR)

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 81 (INES-92)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state

value: healthy


title: Neuroblastoma 253 (INES-290)

value: female

tag: metastases

value: yes

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 83 (INES-94)

tag: tissue

tag: tumor stage

value: INSS 4s

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

value: numerical chromosome alteration (NCA)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 257 (INES-295)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 254 (INES-292)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 267 (INES-306)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 256 (INES-294)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 203 (INES-230)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 205 (INES-232)

tag: tissue

tag: tumor stage

tag: tumor localization

value: cervical (CER)

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 78 (INES-89)

tag: gender

tag: age at diagnosis (months)

value: no

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 77 (INES-87)

value: male

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 202 (INES-229)

tag: tissue

tag: tumor stage

tag: tumor localization

value: thoracic (THO)

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 80 (INES-91)

tag: gender

tag: age at diagnosis (months)

value: thoracic (THO)/adrenal (ADR)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: segmental chromosome alteration (SCA)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 82 (INES-93)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

value: alive

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 85 (INES-96)

tag: tissue

tag: tumor stage

value: localized, unresectable

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 76 (INES-86)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: no alterations

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 11 (INES-14)

value: neuroblastoma

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 75 (INES-85)

tag: tissue

tag: tumor stage

tag: tumor localization

value: adrenal (ADR)

tag: cns metastasis

tag: bone metastasis

value: dead

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 74 (INES-84)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 5 (INES-6)

value: INSS 4

value: female

tag: metastases

value: yes

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 72 (INES-82)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 73 (INES-83)

tag: gender

tag: age at diagnosis (months)

value: abdominal (ADR)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

value: numerical chromosome alteration (NCA)

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 79 (INES-90)

tag: metastases

value: no

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 209 (INES-236)

tag: tissue

tag: tumor stage

value: male

tag: tumor localization

value: cervical (CER)

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 71 (INES-81)

tag: gender

tag: age at diagnosis (months)

value: thoracic (THO)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 4 (INES-5)

value: INSS 4s

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

value: alive

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 3 (INES-4)

tag: tissue

tag: tumor stage

value: localized, unresectable

tag: tumor localization

value: pelvic (PEL)

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 63 (INES-73)

value: neuroblastoma

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 70 (INES-80)

value: adrenal (ADR)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 60 (INES-70)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 69 (INES-79)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 65 (INES-75)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 67 (INES-77)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 59 (INES-68)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 62 (INES-72)

value: INSS 4

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

value: segmental chromosome alteration (SCA)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 66 (INES-76)

tag: tissue

tag: tumor stage

tag: tumor localization

value: yes

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 58 (INES-67)

tag: gender

value: female

tag: age at diagnosis (months)

value: abdominal (ADR)/thoracic (THO)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 57 (INES-66)

tag: metastases

value: no

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

value: numerical chromosome alteration (NCA)

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 55 (INES-64)

tag: tissue

tag: tumor stage

value: male

tag: tumor localization

value: abdominal (ADR)

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 52 (INES-61)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 61 (INES-71)

value: INSS 4s

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 48 (INES-57)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

value: alive

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 51 (INES-60)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 50 (INES-59)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 64 (INES-74)

tag: tissue

tag: tumor stage

value: localized, unresectable

tag: tumor localization

value: cervical (CER)/thoracic (THO)

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 45 (INES-54)

value: neuroblastoma

tag: gender

tag: age at diagnosis (months)

value: thoracic (THO)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 31 (INES-36)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)

value: blood


title: Neuroblastoma 46 (INES-55)

tag: tissue

tag: tumor stage

tag: tumor localization

value: adrenal (ADR)

tag: cns metastasis

tag: bone metastasis

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

value: healthy


title: Neuroblastoma 36 (INES-41)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 43 (INES-51)

value: pelvic (PEL)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 44 (INES-52)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 47 (INES-56)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: segmental chromosome alteration (SCA)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 37 (INES-42)

value: female

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 30 (INES-35)

tag: tissue

tag: tumor stage

value: INSS 4

tag: tumor localization

value: yes

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 56 (INES-65)

tag: gender

tag: age at diagnosis (months)

value: no

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

value: numerical chromosome alteration (NCA)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 29 (INES-34)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 28 (INES-33)

tag: tissue

tag: tumor stage

value: male

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 27 (INES-32)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 9 (INES-12)

value: INSS 4s

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 14 (INES-17)

tag: tissue

tag: tumor stage

tag: tumor localization

tag: cns metastasis

tag: bone metastasis

value: alive

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 6 (INES-7)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

tag: disease state


title: Neuroblastoma 19 (INES-22)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 17 (INES-20)

tag: tissue

tag: tumor stage

value: localized, unresectable

tag: tumor localization

value: abdominal (ADR)

tag: cns metastasis

tag: bone metastasis

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)


title: Neuroblastoma 25 (INES-30)

value: neuroblastoma

tag: gender

tag: age at diagnosis (months)

value: cervical (CER)/thoracic (THO)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)


title: Neuroblastoma 23 (INES-28)

tag: metastases

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: time from diagnosis to death or last follow up (months)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)

value: blood

tag: disease state


title: Neuroblastoma 26 (INES-31)

tag: tissue

tag: tumor stage

tag: tumor localization

value: thoracic (THO)

tag: cns metastasis

tag: bone metastasis

tag: genomic profile

tag: 1p status (1=1p deletion; 0=normal; 9=silent)


title: Neuroblastoma 16 (INES-19)

tag: gender

tag: age at diagnosis (months)

tag: relapse/progression

tag: time from diagnosis to event or last follow-up (months)

tag: patient status

tag: 11q status (1=11q deletion; 0=normal; 9=silent)

tag: 17q status (1=17q gain; 0=normal; 9=silent)

value: healthy


title: Sézary patient 2 (BAC array)

status: Public on Jul 07 2011

city: Berlin

first: Reinhard

last: Ullmann

department: Human Molecular Genetics

country: Germany

institute: MPIMG

description: Array CGH analysis of a female patient with Sézary syndrome

hyb_protocol: Hybridization was done overnight at 42°C in a slide booster (Advalytix, Brunnthal, Germany). Detailed protocols are available at our website (Molecular Cytogenetics at the Max Planck Institute for Molecular Genetics).

scan_protocol: Slides were scanned at 10 um resolution using an Agilent scanner (G2565BA). PMT settings: 100/100

data_processing: TIFF images were analysed by Genepix 5.0 (Axon Instruments, Union City, CA) and raw intensities (gpr files) were imported into CGHPRO (Chen at al.,2005). Background intensities were not subtracted. Signal intensities were normalized by subgridd LOWESS. Aberrations were defined by Circular Binary Segmentation in combination with log2 ratio threshold of 0.2 and -0.2, respectively.

label: Alexa Fluor 3

source_name: DNA isolated from living peripheral blood mononuclear cells (PBMC) of patient

label_protocol: DNA was labelled by random priming according Invitrogens recommendation (Invitrogen BioPrime® Total Genomic Labeling System). Detailed protocols are available at our website (Molecular Cytogenetics at the Max Planck Institute for Molecular Genetics).

extract_protocol: Living PBMCs were digested with proteinase K followed by phenol/chloroform/QIAamp DNA purification

treatment_protocol: Sonication with Branson Sonifier 450

tag: patient

value: Sézary syndrome

tag: age

tag: time point of blood sample (mm/yy)

label: Alexa Fluor 5

source_name: DNA pool isolated from living peripheral blood mononuclear cells (PBMC) of healthy donors

extract_protocol: Living PBMCs were digested with proteinase K followed by QIAamp DNA purification.

value: healthy control


title: Sézary patient 9 (BAC array)

description: Array CGH analysis of a male patient with Sézary syndrome

scan_protocol: Slides were scanned at 10 µm resolution using an Agilent scanner (G2565BA). PMT settings: 100/100

source_name: DNA isolated from fixed peripheral blood mononuclear cells (PBMC) of patient

extract_protocol: DNA of MeOH/Hac fixed PBMCs were isolated with phenol/chloroform extraction followed by DNA precipitation using isopropanol.

treatment_protocol: Whole genome amplification by GenomePlex (Sigma)

tag: disease state

source_name: DNA pool isolated from fixed peripheral blood mononuclear cells (PBMC) of healty donors


title: Sézary patient 7 (custom 19p 60k oligo array)

hyb_protocol: see Agilent website: http://www.chem.agilent.com/Library/usermanuals/Public/G4410-90010_CGH_Enzymatic_Protocol_v6.2.pdf

scan_protocol: scanned on an Agilent DNA Microarray Scanner G2565BA, Scan resolution: 2µm, Scan region: 61 x 21.6 mm, Green PMT: 100%, Red PMT: 100%

data_processing:
TIFF image processing with Agilent Feature Extraction v10.5.1.1, CGH_105_Dec08 protocol
For visualization with CGHPRO (Chen et al. BMC Bioinformatics 2005) log2 ratios of the processed signals (from FE file) were subtracted: log2("gProcessedSignal")-log2("rProcessedSignal"). DNA copy number changes were defined by circular binary segmentation (Olshen et al. Biostatistics 2004) in combination with a log2 threshold of 0.2/-0.2.

source_name: Peripheral blood mononuclear cells

extract_protocol: DNA isolation was done according to standard protocols by performing proteinase K digestion and subsequent phenol/chloroform extraction or by using commercial DNA cleanup kits according to the manufacturer`s recommendations (QIAamp DNA Blood Mini Kit, QIAGEN, Hilden, Germany / PureLink Genomic DNA Mini Kit, Invitrogen, Karlsruhe, Germany). Samples with a low amount of DNA were amplified with the Sigma Whole Genome Amplification kit or illustra GenomiPhi V2 DNA Amplification kit (GE Healthcare), respectively.


title: Sézary patient 4 (BAC array)

description: Array CGH analysis of a male patient with Sézary syndrome.

hyb_protocol: Hybridization was done overnight at 42°C in a slide booster (Advalytix, Brunnthal, Germany). Detailed protocols are available at our website (Molecular Cytogenetics at the Max Planck Institute for Molecular Genetics)

scan_protocol: Slides were scanned at 10 µm resolution using an Agilent scanner (G2565BA). PMT settings: 100/100.

extract_protocol: Living PBMCs were digested with proteinase K followed by QIAamp DNA purification


title: glnR in 1% tryptone, biological rep2

status: Public on Jul 01 2010

description: Gene transcription data from planktonic culture OD600=0.6.

hyb_protocol: Following fragmentation, 3 μg of cDNA were hybridized for 16 hr at 47℃ on GeneChip S. mutans Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using a laser scanner 7G (Affymetrix).

data_processing: Data were analyzed with GeneChip Operating Software version 1.4 (GCOS 1.4) using Affymetrix default analysis settings and global scaling as the normalization method.

source_name: Streptococcus mutans UA159, delta-glnR

growth_protocol: Cells were grown in chemically-defined medium with 1% tryptone as the nitrogen source.

extract_protocol: Cells were lysed using a beat-beater. Extraction of total RNA was performed using Ambion RiboPure Bacteria kit according to the manufacturer's protocol.

treatment_protocol: Cells were grown to the mid-log phase (OD600 = 0.6) and harvested by centrifugation.

tag: strain

tag: cell type

value: planktonic cells

tag: genotype

value: glnR deletion


title: Sézary patient 7 (BAC array)


title: glnR in 1% tryptone, biological rep1


title: codYglnR in 1% tryptone, biological rep2

source_name: Streptococcus mutans UA159, delta-codY delta-glnR

value: codY deletion, glnR deletion


title: codYglnR in 1% tryptone, biological rep1


title: Sézary patient 2 (custom 19p 60k oligo array)

label_protocol: see Agilent website: http://www.chem.agilent.com/Library/usermanuals/Public/G4410-90010_CGH_Enzymatic_Protocol_v6.2.pdf

value: female


title: Sézary patient 10 (BAC array)


title: Sézary patient 4 (custom 19p 60k oligo array)


title: codY in 1% tryptone, biological rep2

source_name: Streptococcus mutans UA159, delta-codY

value: codY deletion


title: Neuroblastoma 7 (INES-9)

tag: tissue

tag: tumor stage

value: male

tag: tumor localization

tag: metastases

value: no

tag: bone marrow metastasis

tag: liver metastasis

tag: cutaneous metastasis

tag: cns metastasis

tag: bone metastasis

tag: time from diagnosis to death or last follow up (months)

value: numerical chromosome alteration (NCA)

tag: 2p status (1=2p gain; 0=normal; 9=silent)

tag: 3p status (1=3p deletion; 0=normal; 9=silent)

tag: 4p status (1=4p deletion; 0=normal; 9=silent)


title: codY in 1% tryptone, biological rep1


title: WT in 1% tryptone, biological rep2

source_name: Streptococcus mutans UA159, WT

value: WT


title: Sézary patient 12 (400k oligo array)

tag: patient

tag: gender

tag: disease state

tag: age

tag: time point of blood sample (mm/yy)

source_name: lymphoblastoid cells


title: Sézary patient 13 (400k oligo array)


title: Sézary patient 8 (400k oligo array)


title: WT in 1% tryptone, biological rep1

tag: strain

tag: cell type

tag: genotype


title: Sézary patient 14 (BAC array)

description: Array CGH analysis of a female patient with Sézary syndrome.

data_processing: TIFF images were analysed by Genepix 5.0 (Axon Instruments, Union City, CA) and raw intensities (gpr files) were imported into CGHPRO (Chen at al.,2005).Background intensities were not subtracted. Signal intensities were normalized by subgridd LOWESS. Aberrations were defined by Circular Binary Segmentation in combination with log2 ratio threshold of 0.2 and -0.2, respectively.

label_protocol: DNA was labelled by random priming according Invitrogens recommendation (Invitrogen BioPrime® Total Genomic Labeling System).Detailed protocols are available at our website (Molecular Cytogenetics at the Max Planck Institute for Molecular Genetics)

extract_protocol: Living PBMCs were digested with proteinase K followed by phenol/chloroform/isopropanol DNA purification

extract_protocol: DNA of MeOH/Hac fixated PBMCs were isolated with phenol/chloroform/ isopropanol


title: Sézary patient 15 (400k oligo array)

description: genomic DNA amplified with illustra GenomiPhi V2 DNA Amplification kit (GE Healthcare)


title: Sézary patient 11 (400k oligo array)


title: Sézary patient 1 (400k oligo array)


title: Sézary patient 16 (400k oligo array)


title: Sézary patient 18 (400k oligo array)


title: Sézary patient 6 (400k oligo array)


title: Sugar transporter TR18, biological replicate B

status: Public on Jun 15 2007

description: Gene transcription data from planktonic culture OD600=0.6

hyb_protocol: Following fragmentation, 3ug of cDNA were hybridized for 16 hr at 47C on GeneChip S. mutans Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

label: Biotin

source_name: Streptococcus mutans UA159

growth_protocol: Grown in defined medium with stachyose

treatment_protocol: Cells lysed using beat-beater.

tag: planktonic cells


title: Sugar transporter TR19, biological replicate B

growth_protocol: Grown in defined medium with trehalose


title: Sugar transporter TR23, biological replicate A

growth_protocol: Grown in defined medium with mannitol


title: Sugar transporter TR23, biological replicate B


title: Sugar transporter TR22, biological replicate B

growth_protocol: Grown in defined medium with cellobiose


title: Sugar transporter TR19, biological replicate A


title: Sugar transporter TR21, biological replicate A

growth_protocol: Grown in defined medium with maltotriose


title: Sugar transporter TR21, biological replicate B


title: Sugar transporter TR20, biological replicate B

growth_protocol: Grown in defined medium with maltose


title: Sézary patient 5 (400k oligo array)


title: Sézary patient 17 (400k oligo array)

description: genomic DNA amplified with Sigma Whole Genome Amplification kit


title: Sugar transporter TR22, biological replicate A


title: Sugar transporter TR17, biological replicate A

growth_protocol: Grown in defined medium with raffinose


title: Sugar transporter TR18, biological replicate A


title: Sugar transporter TR16, biological replicate B

growth_protocol: Grown in defined medium with galactose


title: Sugar transporter TR17, biological replicate B


title: Sugar transporter TR20, biological replicate A


title: Sézary patient 20 (400k oligo array)


title: Sézary patient 3 (400k oligo array)


title: Sézary patient 19 (400k oligo array)


title: Sugar transporter TR14, biological replicate B

growth_protocol: Grown in defined medium with sucrose and dextranase


title: Sugar transporter TR15, biological replicate A

growth_protocol: Grown in defined medium with lactose


title: Sugar transporter TR15, biological replicate B


title: Sugar transporter TR13, biological replicate A

growth_protocol: Grown in defined medium with mannose


title: Sugar transporter TR16, biological replicate A


title: Sugar transporter TR12, biological replicate B


title: Sugar transporter TR13, biological replicate B


title: Sugar transporter TR14, biological replicate A


title: Sugar transporter TR12, biological replicate A


title: Sugar transporter TR11, biological replicate B

growth_protocol: Grown in defined medium with fructose


title: Sugar transporter TR6, biological replicate B

growth_protocol: Grown in defined medium with glucose and dextranase


title: Sugar transporter TR9, biological replicate A


title: Sugar transporter TR9, biological replicate B


title: Sugar transporter TR7, biological replicate B


title: Sugar transporter TR7, biological replicate A


title: Sugar transporter TR11, biological replicate A


title: Sugar transporter TR10, biological replicate B


title: Sugar transporter TR6, biological replicate A


title: Sugar transporter TR8, biological replicate A


title: Sugar transporter TR5, biological replicate B

growth_protocol: Grown in defined medium with glucose


title: Sugar transporter TR4, biological replicate A


title: Sugar transporter TR3, biological replicate B


title: Sugar transporter TR3, biological replicate A


title: Sugar transporter TR4, biological replicate B


title: Sugar transporter TR2, biological replicate A


title: Sugar transporter TR8, biological replicate B


title: Sugar transporter TR1, biological replicate B


title: Sugar transporter TR1, biological replicate A


title: Sugar transporter TR24, biological replicate B


title: Sugar transporter TR10, biological replicate A


title: Sugar transporter TR24, biological replicate A


title: Sugar transporter TR2, biological replicate B


title: Sugar transporter TR5, biological replicate A