title: A4-LLL-Lung-Met

source_name: Autopsy patient #4 lung metastasis from breast foci A


title: 9830-030597B

status: Public on Nov 06 2011

type: genomic

city: Chapel Hill

first: Charles

middle: M.

last: Perou

state: NC

address: 12-044 Lineberger Comprehensive Cancer Center CB# 7295

department: Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center

country: USA

institute: University of North Carolina at Chapel Hill

description: Paired Normal Sample (Rref) came from normal DNA from EBV immortalized Lymphocyte

hyb_protocol: The samples were loaded onto the Human-1 array, and hybridized overnight for 16h at 48°C. Following hybridization, the beadchips were submerged in buffer, spun dry in a centrifuge, and assembled into a TeFlow hydro-chamber heated to 44°C

scan_protocol: Within three days, beadchips were imaged on the BeadArray reader using BeadScan software.

data_processing: Sample values were derived follwing a 'PairedSample Analysis' from Illumina's BeadStudio Genotyping Module v(3.3.4)

label: biotin

molecule: genomic DNA

organism: Homo sapiens

source_name: Breast Tumor

label_protocol: 250 ng of genomic DNA was used as template for WGA, using Illumina proprietary reagents. Following WGA, the amplified DNA was enzymatically fragmented, isopropanol precipitated and resuspended in Illumina resuspension buffer

extract_protocol: Peripheral blood was collected in EDTA and stored at -40°C. DNA was isolated using phenol/chloroform extraction and ethanol precipitation as described previously (Andersen et al., 1992). Tumor DNA from snap frozen tumors, stored at -80°C, was isolated following the same Phenol/Chloroform extraction procedure.

tag: subtype

value: Claudin-low


title: 9830-010130B

value: Basal


title: 9830-020310B

value: LumB


title: 9830-000517B


title: 9830-010118B


title: 9830-010214B


title: 9830-010384B


title: BC00016-T

description: Paired Normal Sample (Rref) came from Normal DNA from Normal Breast


title: 9830-010461B

value: LumA


title: 9830-020340B

source_name: Breast Tumor, tamoxifen-treated patient


title: 9830-020025B


title: 9830-020416B


title: 9830-020185B


title: 9830-010255B


title: 9830-000471B


title: UNC-040182B


title: UNC-040114B-core


title: 9830-000248B


title: 9830-040072B


title: UNC-040134B


title: 9830-030399B


title: UNC-030408B-core


title: 9830-030363B

value: Normal-like


title: UNC-040191B-core


title: 9830-000060B


title: UNC-030528B


title: 9830-030118B


title: 9830-030619B


title: 9830-000424B


title: UNC-020510B--


title: UNC-030183B


title: UNC-030370B


title: UNC-020320B


title: UNC-020428B


title: UNC-020439B


title: 9830-030267B


title: UNC-020464B-core


title: 9830-000094B


title: 9830-030584B


title: UNC-010509B


title: UNC-030065B


title: UNC-020578B


title: UNC-010532B-core


title: UNC-020297B


title: 010456B-Genomic-Core


title: BC00063


title: UNC-010355B


title: ME16C cell line

status: Public on Sep 22 2011

type: RNA

description: ME16C cell line

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-128

scan_protocol: Fluorescent array images were collected for both Cy3 and Cy5 with a GenePix 4000B fluorescent scanner and image intensity data were extracted and analyzed with GenePix Pro 5.1 analysis software.

data_processing: Data for both channels were Lowess-normalized and then log(2) ratio was taken

molecule: total RNA

source_name: Human Reference B

extract_protocol: Total RNA isolated by stratagene

tag: reference

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

extract_protocol: Qiagen Rneasy Kit

tag: cell line

tag: origin tissue

value: breast


title: BALBc_p53null_spontaneous_4702L_MEDINA

status: Public on Aug 15 2011

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-524

scan_protocol: scanned on Agilent scanner (model G2505B)

organism: Mus musculus

source_name: whole mouse reference RNA

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

extract_protocol: Total RNA isolated by Trizol

value: common reference RNA sample for these experiments consisted of total RNA harvested from equal numbers of C57Bl6/J and 129 male and female Day1 pups

extract_protocol: Qiagen Rneasy Mini Kit

tag: strain

value: BALBc

tag: tumor

value: mammary tumor

tag: pathology

tag: latency

value: 56 wk

tag: molecular subtype

value: Basal 1


title: UNC-010318B


title: MCF12F

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-132


title: HMEC CA

description: HMEC CA

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-129


title: BALBc_p53null_spontaneous_4729L_MEDINA

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-525

value: IDC high grade

value: 47 wk


title: BALBc_p53null_spontaneous_4706L_MEDINA

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-521

value: 59 wk

value: CLOW


title: BALBc_p53null_spontaneous_2297R_MEDINA

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-526

value: IDC low grade

value: 27 wk


title: BALBc_p53null_spontaneous_4127R_MEDINA

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-523

value: IDC

value: 44 wk


title: MCF12A

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-131


title: HMEC BX HuMEC p2

description: HMEC BX HuMEC p2

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-126

source_name: HME-CC

value: HME-CC


title: BALBc_p53null_spontaneous_4100R_MEDINA

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-522

value: 41 wk


title: 010353B-Genomic-Core

value: LumA


title: BABE cell line

description: BABE cell line

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-127

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

value: breast


title: HMEC BW HuMEC p2

description: HMEC BW HuMEC p2

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-125


title: FVB_C3(1)-Tag_123049_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-575

value: common reference RNA sample for these experiments consisted of total RNA harvested from equal numbers of C57Bl6/J and 129 male and female Day1 pups

value: FVB


title: FVB_MMTV_Neu_116922_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-580

value: mammary tumor


title: WU-07805-15726

description: Tissue: Breast Tumor, Subtype: LumA

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124"

scan_protocol: Fluorescent array images were collected for both Cy3 and Cy5 with a GenePix 4000B fluorescent scanner and image intensity data were extracted and analyzed with GenePix Pro 4.1 analysis software.

source_name: Human Reference B2 cRNA 2.5ug

tag: tissue

value: Breast Tumor


title: FVB_MMTV_Neu_117391_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-581


title: FVB_MMTV_Neu_116916_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-579


title: MCF10A

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-130


title: FVB_MMTV_Neu_110277_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-576


title: FVB_MMTV_Neu_110288_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-577


title: FVB_MMTV_Neu_116913_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-578


title: FVB_C3(1)-Tag_117517_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-573


title: FVB_C3(1)-Tag_120157_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-574


title: Balbc_p53null_transplant_T11-753R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-566

value: BALBc

value: mesenchymal

value: 25 wk


title: Balbc_p53null_transplant_2397L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-563

value: 35 wk


title: FVB_C3(1)-Tag_116410B_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-571


title: FVB_C3(1)-Tag_116409C_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-570


title: FVB_C3(1)-Tag-120555_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-568


title: Balbc_p53null_transplant_2412R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-564

value: IDC low grade

value: 23 wk

value: Basal 2


title: Balbc_p53null_transplant_2396R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-562

value: IDC high grade

value: 47 wk


title: Balbc_p53null_transplant_2377R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-560

value: 45 wk


title: Balbc_p53null_transplant_2530R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-565

value: 32 wk


title: FVB_C3(1)-Tag-121415_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-569


title: Balbc_p53null_transplant_T1-355-3_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-567

value: IDC

value: 40 wks


title: Balbc_p53null_transplant_2374R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-559

value: common reference RNA sample for these experiments consisted of total RNA harvested from equal numbers of C57Bl6/J and 129 male and female Day1 pups

value: IBC - EMT?

value: 38 wk


title: FVB_C3(1)-Tag_117338-1_PEROU

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-572

value: FVB

value: mammary tumor


title: Balbc_p53null_transplant_2393R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-561

value: BALBc

value: 52 wk


title: Balbc_p53null_transplant_T11-753R_JIH_CGH

description: mammary tumor

hyb_protocol: hybridized to Agilent 244k CGH arrays (model G4415A)

source_name: DNA reference

label_protocol: labeled according to the direct incorporation method (Agilent)

extract_protocol: genomic DNA isolated using Dneasy kit (Qiagen)

value: DNA reference

extract_protocol: Qiagen Dneasy Kit

value: mesenchymal

value: 25 wk

value: CLOW


title: Balbc_p53null_transplant_T1-355-3_JIH_CGH

description: mammary tumor


title: Balbc_p53null_transplant_2374L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-558

value: EMT

value: 39 wk


title: Balbc_p53null_transplant_2349L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-554

value: IDC high grade

value: 47 wk

value: luminal


title: Balbc_p53null_transplant_2356R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-557

value: IDC high grade (very undiff.)

value: 41 wk

value: Basal 2


title: Balbc_p53null_transplant_2350R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-556

value: common reference RNA sample for these experiments consisted of total RNA harvested from equal numbers of C57Bl6/J and 129 male and female Day1 pups


title: Balbc_p53null_transplant_2349R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-555


title: Balbc_p53null_transplant_2396R_JIH_CGH

description: mammary tumor


title: Balbc_p53null_transplant_2393R_JIH_CGH

description: mammary tumor


title: Balbc_p53null_transplant_2530R_JIH_CGH

description: mammary tumor

value: 32 wk


title: Balbc_p53null_transplant_2331L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-552

value: mammary tumor

value: IDC - low grade (apocrine)

value: 23 wk


title: Balbc_p53null_transplant_2243L_JIH_CGH

description: mammary tumor

value: DNA reference

value: BALBc

value: IDC low grade

value: 37 wk


title: Balbc_p53null_transplant_2377R_JIH_CGH

description: mammary tumor

value: 45 wk


title: Balbc_p53null_transplant_2374R_JIH_CGH

description: mammary tumor

value: IBC - EMT?

value: 38 wk


title: Balbc_p53null_transplant_2336R_JIH_CGH

description: mammary tumor

value: 30 wk


title: Balbc_p53null_transplant_2249L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-551

value: IBC - myoepi +

value: 46 wk


title: Balbc_p53null_transplant_2249L_JIH_CGH

description: mammary tumor


title: Balbc_p53null_transplant_2349L_JIH_CGH

description: mammary tumor

value: IDC high grade

value: 47 wk

value: luminal


title: Balbc_p53null_transplant_2228R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-549

value: common reference RNA sample for these experiments consisted of total RNA harvested from equal numbers of C57Bl6/J and 129 male and female Day1 pups

value: 48 wk


title: Balbc_p53null_transplant_2336R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-553

value: mammary tumor

value: Basal 2


title: Balbc_p53null_transplant_2211R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-547

value: IDC high grade (undiff.)


title: Balbc_p53null_transplant_2412R_JIH_CGH

description: mammary tumor

value: DNA reference

value: BALBc

value: 23 wk


title: Balbc_p53null_transplant_2210L_JIH_CGH

description: mammary tumor

value: 52 wk


title: Balbc_p53null_transplant_2331L_JIH_CGH

description: mammary tumor

value: IDC - low grade (apocrine)


title: Balbc_p53null_transplant_2356R_JIH_CGH

description: mammary tumor

value: IDC high grade (very undiff.)

value: 41 wk


title: Balbc_p53null_transplant_2151R_JIH_CGH

description: mammary tumor

value: mesenchymal

value: 32 wk

value: CLOW


title: Balbc_p53null_transplant_2211L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-546

value: IDC high grade

value: 47 wk


title: Balbc_p53null_transplant_2224L_JIH_CGH

description: mammary tumor

value: IDC low grade

value: 35 wk


title: Balbc_p53null_transplant_2228R_JIH_CGH

description: mammary tumor

value: mammary tumor

value: 48 wk


title: Balbc_p53null_transplant_2211R_JIH_CGH

description: mammary tumor

value: IDC high grade (undiff.)

value: luminal


title: Balbc_p53null_transplant_2243L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-550

value: common reference RNA sample for these experiments consisted of total RNA harvested from equal numbers of C57Bl6/J and 129 male and female Day1 pups

value: BALBc

value: 37 wk


title: Balbc_p53null_transplant_2209R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-544


title: Balbc_p53null_transplant_2224L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-548

value: Basal 2


title: Balbc_p53null_transplant_2153L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-542


title: Balbc_p53null_transplant_2349R_JIH_CGH

description: mammary tumor

value: DNA reference


title: Balbc_p53null_transplant_2210L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-545

value: 52 wk


title: Balbc_p53null_transplant_2211L_JIH_CGH

description: mammary tumor

hyb_protocol: hybridized to Agilent 244k CGH arrays (model G4415A)


title: Balbc_p53null_transplant_2154L_JIH_CGH

description: mammary tumor

value: 50 wk


title: Balbc_p53null_T7_transplant_JIH_CGH

description: mammary tumor


title: Balbc_p53null_transplant_2153L_JIH_CGH

description: mammary tumor


title: Balbc_p53null_transplant_2151L_JIH_CGH

description: mammary tumor

value: 32 wk


title: Balbc_p53null_transplant_2154L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-543


title: Balbc_p53null_T7_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-538


title: Balbc_p53null_transplant_2151L_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-539


title: Balbc_p53null_transplant_2151R_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-541

value: mesenchymal

value: CLOW


title: Balbc_p53null_transplant_2151L_JIH_repeat

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-540


title: Balbc_p53null_2250L_transplant_JIH_CGH

description: mammary tumor

value: IDC low grade (apocrine)

value: 41 wk


title: Balbc_p53null_2304L_transplant_JIH_CGH

description: mammary tumor

value: IDC low grade

value: 38 wk


title: Balbc_p53null_2250L_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-534

value: mammary tumor


title: Balbc_p53null_T2-336_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-537

value: IDC

value: 46 wks


title: Balbc_p53null_2333R_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-536

value: common reference RNA sample for these experiments consisted of total RNA harvested from equal numbers of C57Bl6/J and 129 male and female Day1 pups


title: Balbc_p53null_2304L_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-535

value: BALBc


title: Balbc_p53null_2247R_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-533

value: 37 wk


title: Balbc_p53null_2333R_transplant_JIH_CGH

description: mammary tumor


title: Balbc_p53null_2247R_transplant_JIH_CGH

description: mammary tumor


title: Balbc_p53null_2225R_transplant_JIH_CGH

description: mammary tumor

value: 44 wk


title: Balbc_p53null_2208L_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-528

value: 43 wk

value: luminal


title: Balbc_p53null_2225L_transplant_JIH_rep

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-529

value: IBC (myoepi)

value: Basal 1


title: Balbc_p53null_2225L_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-530


title: Balbc_p53null_2225L_transplant_JIH_CGH

description: mammary tumor

value: DNA reference


title: Balbc_p53het_IR_C0323-4_KOLLER_44K

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-520


title: Balbc_p53null_2245R_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-532

value: 34 wk


title: Balbc_p53null_2153R_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-527

value: 40 wk


title: Balbc_p53het_IR_A2989-7_KOLLER_44K

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-519


title: UNC01-0098C5-44K

status: Public on Jun 20 2011

description: omental metastasis

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-507

extract_protocol: Total RNA isolated by Stratagene

value: Human Reference B

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-125

extract_protocol: Total RNA using Qiagen Rneasy Kit

value: omental metastasis


title: A15-MediastinalMet

description: mediastinal metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-502

value: mediastinal metastasis


title: A12-11Adrenal G. Met

description: lung metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-518

source_name: A12-3 LungMet

value: lung metastasis


title: UNC05-0375C5-44K

description: ovary metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-505

value: ovary metastasis


title: UNC06-0735C2-44K

description: liver metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-520

value: liver metastasis


title: UNC06-1496C2-44K

description: liver metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-526


title: Balbc_p53null_2225R_transplant_JIH

description: mammary tumor

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-531

value: common reference RNA sample for these experiments consisted of total RNA harvested from equal numbers of C57Bl6/J and 129 male and female Day1 pups

value: mammary tumor

value: IDC low grade


title: BALBc_p53null_3939R_PBROWN_CGH

description: mammary tumor

hyb_protocol: hybridized to Agilent 244k CGH arrays (model G4415A)

value: BALBc

value: 45 wk


title: BALBc_p53null_spontaneous_4706L_MEDINA_CGH

description: mammary tumor

value: IDC high grade

value: 59 wk

value: CLOW


title: Balbc_p53null_T2-336_transplant_JIH_CGH

description: mammary tumor

value: DNA reference

value: IDC

value: 46 wks


title: BALBc_p53null_spontaneous_4729L_MEDINA_CGH

description: mammary tumor

value: 47 wk

value: Basal 1


title: A7-Pleura-Met

description: pleura metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-515

value: Human Reference B

value: pleura metastasis


title: A7-Rib-Met

description: rib metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-514

value: rib metastasis


title: A2_Mediastinal-Met

description: mediastinal metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-504

value: mediastinal metastasis


title: UNC06-1067B

description: breast tumor

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-508

value: breast tumor


title: UNC03-0484B-44K

description: liver metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-522

value: liver metastasis


title: UNC05-0620C2-44K

description: liver metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-523


title: A2_Subcarinal-Node

description: subcarinal metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-503

value: subcarinal metastasis


title: UNC07-0314C5-44K

description: brain metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-506

value: brain metastasis


title: Balbc_p53null_2153R_transplant_JIH_CGH

description: mammary tumor

value: BALBc

value: mammary tumor

value: IDC low grade

value: 40 wk


title: Balbc_p53null_2208L_transplant_JIH_CGH

description: mammary tumor

value: DNA reference

value: 43 wk

value: luminal


title: A7-LiverMet

description: liver metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-530


title: Balbc_p53null_transplant_2209R_JIH_CGH

description: mammary tumor

label_protocol: labeled according to the direct incorporation method (Agilent)

value: IDC high grade

value: 48 wk


title: A12-5 LN Met

description: LN metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-532

value: Human Reference B

source_name: A12-5 LN Met

value: LN metastasis


title: BALBc_p53null_spontaneous_4100R_MEDINA_CGH

description: mammary tumor

value: IDC

value: 41 wk

value: Basal 1


title: BALBc_p53null_2657R_PBROWN_CGH

description: mammary tumor

value: mesenchymal

value: 51 wk

value: CLOW


title: PB342-LN-Met

description: LN metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-535

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-125


title: BALBc_p53null_spontaneous_4702L_MEDINA_CGH

description: mammary tumor

value: BALBc

value: 56 wk


title: MB93-LN-MET

description: LN metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-524


title: UNC07-0060B-44K

description: brain metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-527

value: brain metastasis


title: BALBc_p53null_spontaneous_4127R_MEDINA_CGH

description: mammary tumor

value: mammary tumor

value: 44 wk


title: UNC05-0046C5-44K

description: brain metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-513


title: A8-Spinal-Cord-Met

description: spinal metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-516

value: spinal metastasis


title: BALBc_p53null_3941R_PBROWN_CGH

description: mammary tumor

value: DNA reference

value: IDC low grade


title: A4-LUL-Lung-Met-Custom

description: lung metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-501

value: lung metastasis


title: UB79-LN-LumB

description: LN metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-538

value: Human Reference B


title: UB-88LN

description: LN metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-539

value: LN metastasis


title: A6-Lung-Met-LumB

description: lung metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-517


title: A11-2 LiverMet

description: liver metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-528

source_name: A12-1 LiverMet

value: liver metastasis


title: A14 Brain Met

description: brain metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-499

source_name: A14 Brain Met


title: A12-1 LiverMet

description: adrenal metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-525

source_name: A12-11Adrenal G. Met

value: adrenal metastasis


title: UNC03-0521C5-44K

description: brain metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-511


title: PB126LN-Custom

description: LN metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-534


title: A2_Liver-Met

description: liver metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-519


title: UB-120LN

description: LN metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-536


title: H1AUNC44K-H1-0559

description: Tissue: Breast Tumor, Subtype: Normal-like

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124"

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

value: Breast Tumor

value: Normal-like


title: UNC03-0432B-44K

description: brain metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-510


title: UNC03-0311B-44K

description: brain metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-509

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-125


title: A14 Brain Met-new

description: brain metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-498

source_name: A14 Brain Met-new


title: UB78-LN-LumB

description: LN metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-537


title: UNC04-0490C5-44K

description: brain metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-512


title: Spain-1709716

status: Public on May 27 2011

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

tag: study

value: Madrid

tag: age

tag: histologic grade (1=grade i (low);  2= grade ii (intermediate); 3= grade iii (high); 9 = n/a)

tag: histology (1=necrosis; 2=ductal carcinoma; 3=lobular; 4=mixed ductal/lobular carcinoma; 5=other  6=no invasive tumor present; 9 = n/a )

tag: tumor size (pre-chemotherapy), cm (-1 = n/a)

tag: er (0=negative; 1=positive; 9 = n/a)

tag: pgr  (0=negative; 1=positive; 9 = n/a)

tag: her2 (0=negative; 1=positive; 9 = n/a)

tag: pam50 + claudin-low

value: Luminal A

tag: neoadjuvant chemotherapy

value: Taxane

tag: number of positive nodes (post chemotherapy)

tag: pcr

value: No

tag: residual cancer burden index class

value: II


title: Spain-625103

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

tag: reference

value: Luminal B


title: Spain-279793


title: Spain-160429


title: Spain-696558

value: Doxorubicin

value: Yes


title: Spain-1657308

value: Basal

value: III


title: Spain-1675717


title: Spain-1433346


title: Spain-1057098

value: Normal


title: A5-Skin#1-Rt-Met-Custom

description: Autopsy patient #5 skin metastasis from breast foci A.


title: Spain-925056

value: I


title: BALBc_p53null_1634R_PBROWN_CGH

description: mammary tumor

label_protocol: labeled according to the direct incorporation method (Agilent)

value: DNA reference

tag: strain

value: BALBc

tag: tumor

value: mammary tumor

tag: pathology

value: IDC high grade

tag: latency

value: 50 wk


title: A2_Lung-Met

description: lung metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-521

value: Human Reference B

value: lung metastasis


title: Spain-1024081

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: study

value: Madrid

tag: age

value: Luminal A


title: Spain-1086160

tag: histologic grade (1=grade i (low);  2= grade ii (intermediate); 3= grade iii (high); 9 = n/a)

tag: histology (1=necrosis; 2=ductal carcinoma; 3=lobular; 4=mixed ductal/lobular carcinoma; 5=other  6=no invasive tumor present; 9 = n/a )

value: No


title: Spain-1430531

tag: tumor size (pre-chemotherapy), cm (-1 = n/a)

tag: er (0=negative; 1=positive; 9 = n/a)

value: Taxane


title: Spain-1617566

tag: pgr  (0=negative; 1=positive; 9 = n/a)

tag: her2 (0=negative; 1=positive; 9 = n/a)

value: Claudin

value: Doxorubicin


title: Spain-1679253

tag: pam50 + claudin-low

tag: neoadjuvant chemotherapy

value: III


title: Spain-1573308

tag: number of positive nodes (post chemotherapy)

tag: pcr

value: Yes


title: Spain-1695081

tag: reference

tag: residual cancer burden index class

value: II


title: Spain-612483

value: Luminal B


title: Spain-1418548


title: Spain-1414726


title: Spain-949367


title: Spain-398225

value: Normal

value: I


title: Spain-1681431


title: Spain-921769

value: Basal


title: Spain-1539204


title: Spain-562774


title: Spain-1608625


title: Spain-1548324


title: Spain-173610


title: Spain-1680904


title: Spain-531473


title: Spain-1621296


title: Spain-1182927


title: UNC99-0182A

status: Public on Mar 18 2011

tag: tissue

value: normal breast


title: Spain-1234161


title: H1AUNC44K-H1-0558

status: Public on Feb 22 2011

description: Tissue: Breast Tumor, Subtype: LumA

tag: Tissue

value: Breast Tumor

tag: Subtype

value: LumA


title: UNC99-0339A

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs


title: UNC99-0141A


title: BALB_C4-HI_3_FIB_LCM

status: Public on Jan 22 2011

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-150

source_name: Mouse Reference

extract_protocol: Total RNA isolated by TRIZOL reagent

tag: strain

value: BALB/c

value: whole mouse total RNA

label_protocol: see methods

extract_protocol: Stratagene RNA microisolation kit (Stratagene, La Jolla, CA)

value: laser captured tumor stroma


title: BALB_C4-HI_4_EPI_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-145

value: laser captured epithelial tumor cells


title: BALB_C4-HD_4_EPI_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-142

treatment_protocol: MPA treatment


title: BALB_C4-HI_4_FIB_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-151


title: BALB_C4-HI_2_FIB_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-149


title: BALB_C4-HD_2_FIB_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-146


title: BALB_C4-HI_2_EPI_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-143


title: BALB_C4-HD_4_FIB_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-148


title: BALB_C4-HD_3_FIB_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-147


title: BALB_C4-HD_3_EPI_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-141


title: BALB_C4-HI_3_EPI_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-144


title: Spain-1520324

tag: study

value: Madrid

tag: age

value: Luminal A

value: No


title: BALB_C4-HI_(4)_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-135

value: mammary tumor


title: BALB_C4-HI_2_1_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-138


title: BALB_C4-HD_2_EPI_LCM

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-140


title: BALB_C4-HI_2_2_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-139


title: BALB_C4-HI_1_2_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-137


title: BALB_C4-HI_(3)_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-134


title: Agilent-1945

status: Public on Mar 01 2011

description: matches to expression sample: Mixed_Rb_6.Oct22.07_UHNC

hyb_protocol: Appropriate cyanine 5- and cyanine 3-labeled DNA sample pairs were combined and then mixed with mouse Cot-1 DNA, Agilent 10X aCGH Blocking Agent, and Agilent 2X Hi-RPM Hybridization Buffer. The labeled target solution was hybridized to Agilent's 244a Mouse Genome CGH microarray (G4415A) using SureHyb chambers. After hybridization the microarrays were washed and dried according to the procedures described in Agilent's protocol.

scan_protocol: Each microarray slide was scanned at a resolution of 5 um on Agilent G2539A scanner under Scan Control software version A.8.1.3.  Spot intensity values were obtained using Agilent aCGH version 4.1 -FE 10 Default Protocol under Agilent Feature Extraction software version 10.1.

source_name: Normal whole-spleen tissue

label_protocol: 0.9 ug of genomic DNA digested with Alu I and Rsa I restriction enzymes at 37 degrees Celsius for 2 hours.  The reaction was stopped by heating the mixture to 65 degrees Celsius for 20 minutes.  Each fragment was then randomly primed at 95 degrees celsius for 3 minutes.  Cy3 and Cy5 modified nucleotides were then incorporated by the Large Fragment of DNA Polymerase I (exo klenow fragment) at 37 degrees Celsius for 2 hours.

extract_protocol: Mouse DNA was isolated from either small tissue pellets (20-30 ug) or ethanol precipitated RNA flow through solution.  Pellet digestion and DNA isolation steps were in accord with the DNAeasy Mini Kit protocol.

value: FVB

value: Spleen

source_name: Mammary tumor tissue: Mixed_Rb_6.Oct22.07_CGH_UHNC

value: Mixed

tag: mouse class


title: BALB_C4-HI_1_1_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-136


title: A244k-2040

description: matches to expression sample: Mixed_Rb_7.Oct22.07_UHNC

source_name: Mammary tumor tissue: Mixed_Rb_7.Oct22.07_CGH_UHNC


title: BALB_C4-HD_sMPA_1_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-131

treatment_protocol: MPA pellet removed 48 hrs prior to sacrifice


title: BALB_C4-HD_sMPA_(1)_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-129


title: BALB_C4-HD_(2)_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-126


title: BALB_C4-HD_(3)_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-127


title: BALB_C4-HI_(2)_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-133


title: BALB_C4-HD_sMPA_2_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-132


title: Agilent-1892cn

description: USED FOR MIXED Rb1 aCGH REFERENCE

source_name: Mammary tumor tissue: Mixed_Rb_pool_UHNC

value: Mixed Rb1 reference


title: Agilent-1942

description: matches to expression sample: Mixed_Rb_1.Oct22.07_UHNC

source_name: Mammary tumor tissue: Mixed_Rb_1.Oct22.07_CGH_UHNC


title: BALB_C4-HD2_2_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-125


title: UNC99-0158A

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

source_name: Human Reference B


title: Agilent-2043cn

description: NO Matches to Expression Sample

source_name: Mammary tumor tissue: Mixed_Rb_1_UHNC


title: Agilent-1891cn

description: NO Matches to Expression Sample

source_name: Mammary tumor tissue: Mixed_Rb_2_UHNC


title: BALB_C4-HD_sMPA_(2)_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-130


title: A244k-2042

description: matches to expression sample: Mixed_Rb_11.Nov10.07_UHNC

source_name: Mammary tumor tissue: Mixed_Rb_11.Oct22.07_CGH_UHNC


title: Agilent-2087

source_name: Mammary tumor tissue: Mixed_Rb_1.oct22.07_CGH_UHNC_repeat


title: A244k-2041

description: matches to expression sample: Mixed_Rb_9.Nov10.07_UHNC

source_name: Mammary tumor tissue: Mixed_Rb_9.Oct22.07_CGH_UHNC


title: BALB_C4-HD_(4)_LANARI

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-128


title: Agilent-2039

description: matches to expression sample: Mixed_Rb_3.Oct22.07_UHNC

source_name: Mammary tumor tissue: Mixed_Rb_3.oct22.07_CGH_UHNC


title: Agilent-2088

description: matches to expression sample: Mixed_Rb_2.Oct22.07_UHNC

source_name: Mammary tumor tissue: Mixed_Rb_2.oct22.07_CGH_UHNC


title: H1AUNC-1498C

status: Public on Oct 25 2010

description: WU-05127-19639; PAM50 predicted subtype: Normal

tag: Sample name

tag: PAM50 predicted subtype

value: Normal


title: Agilent-1944

description: matches to expression sample: Mixed_Rb_5.Oct22.07_UHNC

source_name: Mammary tumor tissue: Mixed_Rb_5.Oct22.07_CGH_UHNC


title: H1AUNC-11482-C

description: WU-03693-13642; PAM50 predicted subtype: Normal


title: MCF-7, shMYB Bio-rep 2

status: Public on Oct 15 2010

description: MCF7 cells stably expressing pRS-shMYB

scan_protocol: Fluorescent array images were collected for both Cy3 and Cy5 with Agilent Technologies DNA Microarray Scanner with Surescan High-Resolution Technology (Part no. G2565CA) and the image analyzed using Agilent Feature Extraction Software.

molecule: polyA RNA

source_name: pooled reference mRNA from 4 harvests of MCF7 cells

extract_protocol: Invitrogen Micro-Fast Track 2.0 Kit

tag: cell line

source_name: MCF-7, shMYB Bio-rep 2


title: MCF-7, GFP RNAi_Old

description: MCF7 cells stably expressing pRS-shGFP

source_name: MCF-7, GFP RNAi_Old


title: MCF-7, shMYB

description: MCF7 cells stably expressing pRS-shMYB

source_name: MCF-7, shMYB


title: MCF-7, c-Myb RNAi #9.2-4

description: MCF7 cells stably expressing pRS-shMYB

source_name: MCF-7, c-Myb RNAi #9.2-4


title: MCF-7, shMYB Bio-rep

description: MCF7 cells stably expressing pRS-shMYB

source_name: MCF-7, shMYB Bio-rep


title: BALB_C4-HD2_1_LANARI

source_name: Mouse Reference


title: MCF-7 GFP shRNA_bio rep-2

description: MCF7 cells stably expressing pRS-shGFP

source_name: MCF-7 GFP shRNA_bio rep-2


title: UB-62

status: Public on Sep 01 2010

source_name: Human Reference B

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: grade

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months


title: MCF-7, GFP RNAi_12-7-08

description: MCF7 cells stably expressing pRS-shGFP


title: MCF-7 GFP shRNA_bio rep

description: MCF7 cells stably expressing pRS-shGFP

source_name: MCF-7 GFP shRNA_bio rep


title: H1AUNC44K-H1-0410

description: UNC99-0158B-44K; PAM50 predicted subtype: LumB

tag: reference

value: LumB


title: PB362-C


title: BR94-1083B-C


title: UNC-020568B-New


title: UNC-040011B-New


title: MCF-7 GFP shRNA

description: MCF7 cells stably expressing pRS-shGFP

source_name: MCF-7 GFP shRNA


title: Mixed_Rb_5.Oct22.07_UHNC

status: Public on Jul 07 2010

tag: Whole mouse total RNA

tag: primary mammary tumor


title: Mixed_Rb_6.Oct22.07_UHNC


title: Mixed_Rb_9.Nov10.07_UHNC


title: Mixed_Rb_1.Oct22.07_UHNC


title: Mixed_Rb_2.Oct22.07_UHNC


title: BR00-0587B-UNC1X44K

tag: age


title: Mixed_Rb_3.Oct22.07_UHNC


title: Mixed_Rb_4.Oct22.07_UHNC


title: MCF-7, shMYB Bio-rep 1, rep

description: MCF7 cells stably expressing pRS-shMYB

source_name: MCF-7, shMYB Bio-rep 1, rep


title: Mixed_Rb_11.Nov10.07_UHNC


title: SUM159 sorted CD49f high EpCAM- --Exp3

status: Public on Jun 15 2010

description: SUM159 sorted CD49f high EpCAM- --Exp3

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

extract_protocol: Total RNA isolated by Stratagene.

source_name: SUM159 sorted CD49f high EpCAM- --Exp3

tag: tissue

value: Breast Cancer Cell Line

tag: cell type

value: SUM159 sorted CD49f high EpCAM-


title: SUM159 sorted CD49f low EpCAM- --Exp1--Repl0

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

value: SUM159 sorted CD49f low EpCAM-


title: SUM159 sorted CD49f low EpCAM- --Exp3

description: SUM159 sorted CD49f low EpCAM- --Exp3

source_name: SUM159 sorted CD49f low EpCAM- --Exp3


title: SUM149 sorted 5b/R5 HuMEC CD49f+/EpCAM- --Exp1

value: SUM149 sorted 5b/R5 HuMEC CD49f+/EpCAM-


title: Mixed_Rb_10.Nov10.07_UHNC


title: SUM149 sorted 6a/R5 HuMEC+FBS CD49f+/EpCAM- --Exp1


title: SUM149 sorted 5b/R6 HuMEC CD49f+/EpCAM+ --Exp1

value: SUM149 sorted 5b/R6 HuMEC CD49f+/EpCAM+


title: SUM159 sorted CD49f high EpCAM- --Exp2

description: SUM159 sorted CD49f high EpCAM- --Exp2

source_name: SUM159 sorted CD49f high EpCAM- --Exp2


title: SUM159 sorted CD49f high EpCAM- --Exp1--Repl0


title: SUM149 sorted 5a/R6 HuMEC CD49f+/EpCAM- --Exp1

value: SUM149 sorted 5a/R6 HuMEC CD49f+/EpCAM-


title: SUM149 sorted 6a/R6 HuMEC+FBS CD49f+/EpCAM+ --Exp1


title: SUM159 sorted CD49f low EpCAM- --Exp2

description: SUM159 sorted CD49f low EpCAM- --Exp2

source_name: SUM159 sorted CD49f low EpCAM- --Exp2


title: Agilent-1943

description: matches to expression sample: Mixed_Rb_4.Oct22.07_UHNC

source_name: Normal whole-spleen tissue

tag: strain

source_name: Mammary tumor tissue: Mixed_Rb_4.Oct22.07_CGH_UHNC

tag: mouse class

value: Tag


title: MCF7 sorted CD49f low EpCAM - --Exp3

description: MCF7 sorted CD49f low EpCAM - --Exp3

source_name: MCF7 sorted CD49f low EpCAM - --Exp3

value: MCF7 sorted CD49f low EpCAM -


title: MCF7 sorted CD49f low EpCAM - --Exp2

description: MCF7 sorted CD49f low EpCAM - --Exp2

source_name: MCF7 sorted CD49f low EpCAM - --Exp2


title: MCF-7, GFP RNAi_New

description: MCF7 cells stably expressing pRS-shGFP

source_name: pooled reference mRNA from 4 harvests of MCF7 cells

tag: cell line

source_name: MCF-7, GFP RNAi_New


title: MCF7 sorted CD49f high EpCAM + --Exp1

description: MCF7 sorted CD49f high EpCAM + --Exp1

source_name: MCF7 sorted CD49f high EpCAM + --Exp1

value: MCF7 sorted CD49f high EpCAM +


title: MMS BE

description: MMS BE (without organoids)

source_name: MMS BE

value: Primary Mammospheres

tag: subtype

value: Claudin-low


title: MCF7 sorted CD49f low EpCAM + --Exp2

description: MCF7 sorted CD49f low EpCAM + --Exp2

source_name: MCF7 sorted CD49f low EpCAM + --Exp2

value: MCF7 sorted CD49f low EpCAM +


title: MCF7 sorted CD49f low / EpCAM + --Exp1

description: MCF7 sorted CD49f low / EpCAM + --Exp1

source_name: MCF7 sorted CD49f low / EpCAM + --Exp1

value: MCF7 sorted CD49f low / EpCAM +


title: MCF7 sorted CD49f low EpCAM + --Exp3

description: MCF7 sorted CD49f low EpCAM + --Exp3

source_name: MCF7 sorted CD49f low EpCAM + --Exp3


title: MMS BL

description: MMS BL*

source_name: MMS BL

value: other


title: MMS BB

description: MMS BB Non- treated 4x44K

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: MMS BB


title: SUM149 sorted 5a/R1 HuMEC CD49f+/EpCAM+ --Exp1

value: SUM149 sorted 5a/R1 HuMEC CD49f+/EpCAM+


title: MCF7 sorted CD49f high EpCAM + --Exp2

description: MCF7 sorted CD49f high EpCAM + --Exp2

source_name: MCF7 sorted CD49f high EpCAM + --Exp2


title: MMS BA

description: MMS BA Non- treated 4x44K

source_name: MMS BA


title: UNC-960028B

description: Tissue: Breast Tumor, Subtype: LumA

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: pam50 predictions plus claudin-low classification (cell line predictor)

value: LumA

tag: dscores unc337


title: MMS BC1

description: MMS BC1 4x44K (w/o ORGANOIDS digestion)

source_name: MMS BC


title: MMS BF

description: MMS BF (without organoids)

source_name: MMS BF


title: MCF7 sorted CD49f low EpCAM - --Exp1

description: MCF7 sorted CD49f low EpCAM - --Exp1

source_name: MCF7 sorted CD49f low EpCAM - --Exp1

value: Breast Cancer Cell Line


title: MCF7 sorted CD49f high EpCAM + --Exp3

description: MCF7 sorted CD49f high EpCAM + --Exp3

source_name: MCF7 sorted CD49f high EpCAM + --Exp3


title: UNC-010304B

description: Tissue: Breast Tumor, Subtype: Metaplastics

tag: grade

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months


title: MMS Z

description: MMS Z

tag: reference

source_name: MMS Z

tag: tissue


title: UNC-020157B-core

source_name: Breast Tumor

tag: age

value: Claudin


title: MMS E

description: MMS E 08/05-08/19

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: MMS E


title: 9830-030399B

description: Tissue: Breast Tumor, Subtype: LumA

value: LumB


title: 9830-030267B

description: Tissue: Breast Tumor, Subtype: LumA


title: 9830-030584B

description: Tissue: Breast Tumor, Subtype: LumA


title: normalbreast-BR00-0587A

source_name: Tissue: Breast Tumor, Subtype: Normal-like

value: Normal


title: MMS AR

description: MMS AR non-irradiated

source_name: MMS AR


title: 9830-030619B

description: Tissue: Breast Tumor, Subtype: Claudin

value: Basal


title: MMS AO

description: MMS AO Non-treated

source_name: MMS AO


title: normalbreast-BR00-0572A


title: normalbreast-BR05-0865A

description: Tissue: Normal Breast, Subtype: Normal-like


title: normalbreast-BR06-0182A

source_name: Tissue: Normal Breast, Subtype: Normal-like


title: WashU-15720-repeat

description: Tissue: Breast Tumor, Subtype: LumA

source_name: Tissue: Breast Tumor, Subtype: LumA

value: breast tumor

tag: er (1=positive; 0=negative)

tag: overall survival months


title: 9830-030118B

description: Tissue: Breast Tumor, Subtype: Claudin

tag: er  (1=positive; 0=negative)


title: MMS AP

description: MMS AP Non-treated

source_name: MMS AP

tag: subtype


title: 9830-030363B

description: Tissue: Breast Tumor, Subtype: LumA

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: pgr  (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)


title: MMS AN

description: MMS AN non-treated

source_name: MMS AN


title: 9830-040072B

description: Tissue: Breast Tumor, Subtype: LumA

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: pam50 predictions plus claudin-low classification (cell line predictor)


title: normalbreast-BR06-0222A

tag: grade

tag: dscores unc337


title: UNC00-0552B-44K

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)


title: MMS X

description: MMS X Intact Exp#1

source_name: MMS X


title: UNC-06-0277NB-Na

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)


title: UNC-06-0035NB-Na

tag: reference

tag: overall suvival months


title: UNC-06-0134NB-Na

tag: age


title: MMS H1

description: MMS H1 Intact

source_name: MMS H1

tag: tissue


title: UNC04-0574B-44K


title: UNC99-0158B-44K

description: Tissue: Breast Tumor, Subtype: Claudin


title: UNC00-0164B-44K

description: Tissue: Breast Tumor, Subtype: LumA


title: UNC99-0363B-44K


title: FVB_MMTV_Wnt1_iFGFR2_3068_2L_ROSEN

status: Public on Mar 01 2010

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-135

source_name: Mouse Reference

value: whole mouse total RNA

value: primary mammary tumor


title: FVB_MMTV_Wnt1_iFGFR2_3855_3R_ROSEN

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-136


title: FVB_MMTV_Wnt1_iFGFR1_4004_3L_ROSEN

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-132


title: FVB_MMTV_Wnt1_iFGFR2_2960_5L_ROSEN

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-134


title: FVB_MMTV_Wnt1_3065_Rosen

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-128


title: FVB_MMTV_Wnt1_iFGFR2_3861_3L_ROSEN

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-137


title: FVB_MMTV_Wnt1_iFGFR1_4013_3L_ROSEN

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-133


title: FVB_MMTV_Wnt1_3718.3R_Rosen

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-129


title: FVB_MMTV_Wnt1_2495_1L_Rosen

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-126


title: FVB_MMTV_Wnt1_iR2_5105_3R_Rosen

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-140


title: FVB_MMTV_Wnt1_iFGFR1_3851_5L_ROSEN

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-131


title: FVB_MMTV_Wnt1_iR2_5101_3L_Rosen

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-138


title: FVB_MMTV_Wnt1_iFGFR1_2549_4L_ROSEN

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-130


title: FVB_MMTV_Wnt1_iR2_5103_3L_Rosen

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-139


title: FVB_MMTV_Wnt1_2543-4L_Rosen

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-127


title: FVB_MMTV_Wnt1_2494.2L_Rosen

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-125


title: MDACC-TN77

status: Public on Nov 10 2009

description: Metaplastic breast carcinoma from MDACC. Age: 57, ER status: negative, Node status: positive, 1 node, Size: larger than 5cm, RFS event: no relapse, RFS months: 11, Overall survival event: alive, Overall survival months: 11

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

source_name: Metaplastic Carcinoma from MDACC


title: MDACC-TN6

description: Metaplastic breast carcinoma from MDACC. Age: 49, ER status: negative, Node status: positive, 1 node, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9


title: MDACC-Meta8

description: Metaplastic breast carcinoma from MDACC. Age: 53, ER status: negative, Node status: positive, 2 nodes, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 108, Overall survival event: DOD or DOC, Overall survival months: 108


title: MDACC-Meta5

description: Metaplastic breast carcinoma from MDACC. Age: 40, ER status: negative, Node status: positive, 1 node, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 144, Overall survival event: alive, Overall survival months: 144


title: FVB_MMTV_Wnt1_2406.4R_Rosen


title: MDACC-TN25

description: Metaplastic breast carcinoma from MDACC. Age: 50, ER status: negative, Node status: positive, 1 node, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 12, Overall survival event: alive, Overall survival months: 12


title: MDACC-Meta14

description: Metaplastic breast carcinoma from MDACC. Age: 28, ER status: negative, Node status: positive, 1 node, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 1, Overall survival event: DOD or DOC, Overall survival months: 55


title: MDACC-Meta16

description: Metaplastic breast carcinoma from MDACC. Age: 31, ER status: negative, Node status: positive, 1 node, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 10, Overall survival event: DOD or DOC, Overall survival months: 14


title: MDACC-Meta7

description: Metaplastic breast carcinoma from MDACC. Age: 61, ER status: negative, Node status: positive, 2 nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 18, Overall survival event: DOD or DOC, Overall survival months: 18


title: MDACC-TN36

description: Metaplastic breast carcinoma from MDACC. Age: 44, ER status: negative, Node status: positive, 1 node, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9


title: MDACC-Meta15

description: Metaplastic breast carcinoma from MDACC. Age: 54, ER status: negative, Node status: positive, 1 node, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 30, Overall survival event: DOD or DOC, Overall survival months: 34


title: MDACC-Meta13

description: Metaplastic breast carcinoma from MDACC. Age: 72, ER status: negative, Node status: positive, 1 node, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 109, Overall survival event: alive, Overall survival months: 109


title: MDACC-Meta6

description: Metaplastic breast carcinoma from MDACC. Age: 42, ER status: negative, Node status: positive, 2 nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 16, Overall survival event: DOD or DOC, Overall survival months: 19


title: UNC99-0216B-44K

description: Tissue: Breast Tumor, Subtype: Normal-like


title: N-MycER(delta-MbII)+OHT, 12hrs

status: Public on Sep 22 2009

hyb_protocol: Agilent microarray processing protocol for cRNA

scan_protocol: Fluorescent array images were collected for both Cy3 and Cy5 with an Agilent scanner and image intensity data were analyzed with Agilent software.

source_name: Human foreskin fibroblast cells (AKA:  BJ cells)

label_protocol:
Agilent Low RNA Input Fluorescent Linear Amplification protocol
described in Hu et al., 2005, BioTechniques, 38:121-124

extract_protocol: Trizol, followed by RNeasy

tag: cell type

value: human foreskin fibroblast cells (BJ cells)

tag: growth protocol

value: rapidly dividing when harvested

source_name: N-MycER(delta-MbII)+OHT, 12hrs

growth_protocol: DMEM + 10% FBS, 0.8ug/ml puromycin

treatment_protocol: Sample was treated with 0.8uM 4-hydroxytamoxifen

tag: treatment protocol

value: BJ cells were infected with LCPX-NMyc(delta-MBII), selected and harvested at T= 12hr after OHT treatment


title: Myc response in BJ cells-steady state Vector-1

label_protocol:
Agilent Fluorescent Direct Labeling protocol
described in Hu et al., 2005, BioTechniques, 38:121-124

extract_protocol: Qiagen RNeasy protocol

growth_protocol: DMEM + 10% FBS, 150 ug/ml hygromycin

treatment_protocol: not treated

value: BJ cells were infected with control LXSH virus, selected and harvested weeks after viral transduction


title: N-MycER(delta-MbII)+OHT, 8hrs

source_name: N-MycER(delta-MbII)+OHT, 8hrs

label_protocol: Agilent Low RNA Input Fluorescent Linear Amplification protocol

value: BJ cells were infected with LCPX-NMyc(delta-MBII), selected and harvested at T= 8hr after OHT treatment


title: LCPX-0 Timepoint (b)

source_name: LCPX- 0 Timepoint (b)

treatment_protocol: Sample was mock treated

value: BJ cells were infected with control virus (LCPX), selected and harvested at T= 0hr


title: Myc response in BJ cells-steady state N-MycWT-1

label_protocol: Agilent Fluorescent Direct Labeling protocol

value: BJ cells were infected with LXSH-NMyc, selected and harvested weeks after viral transduction


title: Myc response in BJ cells-steady state N-MycWT-2


title: N-MycER(delta-MbII)+OHT, 4hrs

source_name: N-MycER(delta-MbII)+OHT, 4hrs

value: BJ cells were infected with LCPX-NMyc(delta-MBII), selected and harvested at T= 4hr after OHT treatment


title: FVB_MMTV_Wnt1_iR2_5106_3L_Rosen

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-141


title: Myc response in BJ cells-steady state N-MycDeltaMBII-2

value: BJ cells were infected with LXSH-Nmyc(delta-MBII), selected and harvested weeks after viral transduction


title: Myc response in BJ cells-steady state N-MycDeltaMBII-1


title: N-MycER(delta-MbII)+OHT, 24hrs

source_name: N-MycER(delta-MbII)+OHT, 24hrs

value: BJ cells were infected with LCPX-NMyc(delta-MBII), selected and harvested at T= 24hr after OHT treatment


title: N-MycER(delta-MbII) 0hrs-B

source_name: N-MycER(delta-MbII) 0hrs-B

value: BJ cells were infected with LCPX-NMyc(delta-MBII), selected and harvested at T= 0hr


title: N-MycER(delta-MbII) 0hrs-C

source_name: N-MycER(delta-MbII) 0hrs-C


title: LCPX+OHT, 8hrs

source_name: LCPX+OHT, 8hrs

value: BJ cells were infected with control virus (LCPX), selected and harvested at T= 8hr after OHT treatment


title: N-MycER(delta-MbII)+OHT, 48hrs

source_name: N-MycER(delta-MbII)+OHT, 48hrs

value: BJ cells were infected with LCPX-NMyc(delta-MBII), selected and harvested at T= 48hr after OHT treatment


title: LCPX+OHT, 48hrs

source_name: LCPX+OHT, 48hrs

value: BJ cells were infected with control virus (LCPX), selected and harvested at T= 48hr after OHT treatment


title: LCPX-0 Timepoint (c)

source_name: LCPX- 0 Timepoint (c)


title: LCPX-0 Timepoint (a)

source_name: LCPX-0 Timepoint (a)


title: N-MycER + OHT 2hrs

source_name: N-MycER + OHT 2hrs

value: BJ cells were infected with LCPX-NMyc, selected and harvested at T= 2hr after OHT treatment


title: N-MycER + OHT 24hrs

source_name: N-MycER + OHT 24hrs

value: BJ cells were infected with LCPX-NMyc, selected and harvested at T= 24hr after OHT treatment


title: N-MycER + OHT 8hrs

source_name: N-MycER + OHT 8hrs

value: BJ cells were infected with LCPX-NMyc, selected and harvested at T= 8hr after OHT treatment


title: Myc response in BJ cells-steady state Vector-2

value: human foreskin fibroblast cells (BJ cells)


title: N-MycER + OHT 12hrs

value: rapidly dividing when harvested

source_name: N-MycER + OHT 12hrs

value: BJ cells were infected with LCPX-NMyc, selected and harvested at T= 12hr after OHT treatment


title: N-MycER + OHT 36hrs

source_name: Human foreskin fibroblast cells (AKA:  BJ cells)

source_name: N-MycER + OHT 36hrs

value: BJ cells were infected with LCPX-NMyc, selected and harvested at T= 36hr after OHT treatment


title: N-MycER + OHT 48hrs

source_name: N-MycER + OHT 48hrs

value: BJ cells were infected with LCPX-NMyc, selected and harvested at T= 48hr after OHT treatment


title: N-MycER + OHT 0hr-C

source_name: N-MycER + OHT 0hr-C

value: BJ cells were infected with LCPX-NMyc, selected and harvested at T= 0hr


title: N-MycER(delta-MbII) 0hrs-A

source_name: N-MycER(delta-MbII) 0hrs-A

value: BJ cells were infected with LCPX-Nmyc(delta-MBII), selected and harvested at T= 0hr


title: N-MycER + OHT 4hrs

source_name: N-MycER + OHT 4hrs

value: BJ cells were infected with LCPX-NMyc, selected and harvested at T= 4hr after OHT treatment


title: N-MycER + OHT 0hr-B

source_name: N-MycER + OHT 0hr-B


title: N-MycER + OHT 0hr-A

source_name: N-MycER + OHT 0hr-A


title: N-MycER(delta-MbII)+OHT, 2hrs

source_name: N-MycER(delta-MbII)+OHT, 2hrs

value: BJ cells were infected with LCPX-NMyc(delta-MBII), selected and harvested at T= 2hr after OHT treatment


title: Agilent-9441_3

status: Public on Jun 11 2009

description: Mammary tumor from MMTV-LPA2 transgenic mouse 2

source_name: Whole mouse total RNA

tag: reference sample

value: whole mouse total RNA

value: mammary tumor from MMTV-LPA2 transgenic mouse 2


title: Agilent-9440_3

description: Mammary tumor from MMTV-LPA3 transgenic mouse 4

value: mammary tumor from MMTV-LPA3 transgenic mouse 4


title: Agilent-9441_2

description: Mammary tumor from MMTV-LPA2 transgenic mouse 1

value: mammary tumor from MMTV-LPA2 transgenic mouse 1


title: Agilent-8437_3

description: Mammary tumor from MMTV-LPA3 transgenic mouse 5

value: mammary tumor from MMTV-LPA3 transgenic mouse 5


title: Agilent-8440_4

description: Mammary tumor from MMTV-ATX transgenic mouse 1

value: mammary tumor from MMTV-ATX transgenic mouse 1


title: Agilent-9943_2

description: Mammary tumor from MMTV-LPA1 transgenic mouse 4

value: mammary tumor from MMTV-LPA1 transgenic mouse 4


title: Agilent-8437_4

description: Mammary tumor from MMTV-LPA3 transgenic mouse 1

value: mammary tumor from MMTV-LPA3 transgenic mouse 1


title: Agilent-9441_1

description: Mammary tumor from MMTV-LPA1 transgenic mouse 2

value: mammary tumor from MMTV-LPA1 transgenic mouse 2


title: Agilent-9440_1

description: Mammary tumor from MMTV-LPA1 transgenic mouse 5

value: mammary tumor from MMTV-LPA1 transgenic mouse 5


title: Agilent-8439_2

description: Mammary tumor from MMTV-LPA2 transgenic mouse 3

value: mammary tumor from MMTV-LPA2 transgenic mouse 3


title: Normal-Breast-10

status: Public on Sep 18 2009

description: Single Sample Predictor Subtype: Normal Breast-like

source_name: RefB

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Normal breast tissue from an individual

tag: subtype

value: Normal


title: Agilent-8439_3

description: Mammary tumor from MMTV-ATX transgenic mouse 5

value: mammary tumor from MMTV-ATX transgenic mouse 5


title: Agilent-8440_3

description: Mammary tumor from MMTV-ATX transgenic mouse 2

value: mammary tumor from MMTV-ATX transgenic mouse 2


title: Agilent-9440_2

description: Mammary tumor from MMTV-LPA2 transgenic mouse 5

value: mammary tumor from MMTV-LPA2 transgenic mouse 5


title: Agilent-9440_4

description: Mammary tumor from MMTV-LPA1 transgenic mouse 1

value: mammary tumor from MMTV-LPA1 transgenic mouse 1


title: Agilent-8440_2

description: Mammary tumor from MMTV-LPA1 transgenic mouse 3

value: whole mouse total RNA

value: mammary tumor from MMTV-LPA1 transgenic mouse 3


title: Agilent-8440_1

description: repeat: Mammary tumor from MMTV-LPA1 transgenic mouse 4 (duplicate)

tag: replicate

value: repeat


title: WU-07622-14265

status: Public on Feb 11 2009

description: Age: 67, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 41, Overall survival event: alive, Overall survival months: 41

source_name: Human Reference B

tag: er status

value: positive

tag: node status

value: positive or more nodes

tag: size

value: 2 to 5cm

tag: rfs event

value: no relapse

tag: overall survival event

value: alive

tag: overall survival months

value: breast tumor from WashU

value: LumA


title: Agilent-8439_4

description: Mammary tumor from MMTV-LPA3 transgenic mouse 2

value: mammary tumor from MMTV-LPA3 transgenic mouse 2


title: Agilent-8436_4

description: Mammary tumor from MMTV-ATX transgenic mouse 3

value: mammary tumor from MMTV-ATX transgenic mouse 3


title: Agilent-8437_1

description: Mammary tumor from MMTV-LPA2 transgenic mouse 4

value: mammary tumor from MMTV-LPA2 transgenic mouse 4


title: WU-08626-4774

description: Age: 34, ER status: negative, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: no relapse, RFS months: 37, Overall survival event: alive, Overall survival months: 37

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs


title: WU-07589-13875

description: Age: 70, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 19, Overall survival event: alive, Overall survival months: 19


title: WU-07791-15573

description: Age: 78, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 53, Overall survival event: alive, Overall survival months: 53

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Tissue: Breast Tumor, Subtype: LumA

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: grade

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: Agilent-8439_1

description: Mammary tumor from MMTV-ATX transgenic mouse 4

tag: reference sample

tag: tissue

value: mammary tumor from MMTV-ATX transgenic mouse 4


title: WU-07558-14552

description: Age: 41, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 29, Overall survival event: alive, Overall survival months: 29

tag: reference


title: Agilent-8437_2

description: Mammary tumor from MMTV-LPA3 transgenic mouse 3

value: mammary tumor from MMTV-LPA3 transgenic mouse 3


title: WU-07545-15565

description: Age: 46, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 45, Overall survival event: alive, Overall survival months: 45

tag: age

tag: er status

tag: node status

tag: size

tag: rfs event

tag: subtype


title: WU-07510-15724

description: Age: 55, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 39, Overall survival event: alive, Overall survival months: 39

tag: overall survival event

tag: overall survival months


title: WU-07453-14263

description: Age: 62, ER status: positive, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 57, Overall survival event: alive, Overall survival months: 57

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: grade

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: overall suvival months


title: WU-07509-15584

description: Age: 57, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 22, Overall survival event: alive, Overall survival months: 22

tag: tissue


title: WU-07805-15726

description: Age: 41, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 58, Overall survival event: alive, Overall survival months: 58

tag: reference

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: WU-06646-4771

description: Age: 50, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 44, Overall survival event: alive, Overall survival months: 44

tag: age

tag: er status

tag: node status

tag: size

tag: rfs event

tag: subtype


title: N-MycER(delta-MbII)+OHT, 36hrs

tag: cell type

value: human foreskin fibroblast cells (BJ cells)

tag: growth protocol

value: rapidly dividing when harvested

source_name: N-MycER(delta-MbII)+OHT, 36hrs

tag: treatment protocol

value: BJ cells were infected with LCPX-NMyc(delta-MBII), selected and harvested at T= 36hr after OHT treatment


title: WU-06857-4773

description: Age: 40, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 10, Overall survival event: DOD or DOC, Overall survival months: 11


title: WU-06559-11734

description: Age: 42, ER status: negative, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 35, Overall survival event: DOD or DOC, Overall survival months: 35


title: WU-06611-4686

description: Age: 46, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 51, Overall survival event: alive, Overall survival months: 51


title: WU-06416-4766

description: Age: 74, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 51, Overall survival event: alive, Overall survival months: 51

value: negative

tag: grade

value: 1 to 2cm

tag: overall survival event

tag: overall survival months


title: WU-06545-4772

description: Age: 69, ER status: positive, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 49, Overall survival event: alive, Overall survival months: 49

tag: reference

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: overall suvival months


title: WU-07407-15723

description: Age: 66, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 5, Overall survival event: alive, Overall survival months: 5

tag: tissue


title: WU-05641-4763

description: Age: 40, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 54, Overall survival event: alive, Overall survival months: 54


title: WU-06580-13774

description: Age: 44, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 48, Overall survival event: alive, Overall survival months: 48


title: WU-06036-11733

description: Age: 42, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 49, Overall survival event: alive, Overall survival months: 50


title: WU-05207-14543

description: Age: 72, ER status: positive, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: no relapse, RFS months: 59, Overall survival event: alive, Overall survival months: 59


title: WU-06398-15575

description: Age: 34, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 40, Overall survival event: alive, Overall survival months: 40


title: WU-05897-13644

description: Age: 44, ER status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 47, Overall survival event: alive, Overall survival months: 47

tag: age

tag: er status

tag: size

tag: rfs event

tag: rfs months


title: WU-06397-15574

description: Age: 64, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 19, Overall survival event: alive, Overall survival months: 54


title: WU-05415-4769

description: Age: 52, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 48, Overall survival event: alive, Overall survival months: 48


title: WU-05454-10750

description: Age: 88, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 13, Overall survival event: DOD or DOC, Overall survival months: 13

value: positive

tag: node status

value: positive or more nodes

tag: grade

value: DOD or DOC

tag: subtype


title: WU-05478-4756

description: Age: 41, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 54, Overall survival event: alive, Overall survival months: 54

tag: reference


title: WU-05991-10752

description: Age: 70, ER status: negative, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 10, Overall survival event: DOD or DOC, Overall survival months: 19


title: WU-05561-11732

description: Age: 80, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 57, Overall survival event: alive, Overall survival months: 57

tag: er (1=positive; 0=negative)

tag: overall survival event (0=alive, 1=dod or doc)

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: WU-05162-4653

description: Age: 43, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 66, Overall survival event: DOD or DOC, Overall survival months: 95


title: WU-05196-4631

description: Age: 59, ER status: negative, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 56, Overall survival event: alive, Overall survival months: 56

value: no relapse

tag: overall survival event

value: alive

tag: overall survival months


title: WU-05118-4627

description: Age: 54, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 64, Overall survival event: alive, Overall survival months: 64

value: breast tumor from WashU


title: WU-05094-4757

description: Age: 29, ER status: positive, Node status: positive or more nodes, grade: 1, Size: 1 to 2cm, RFS event: no relapse, RFS months: 60, Overall survival event: alive, Overall survival months: 60

tag: pgr (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: overall suvival months

value: LumA


title: WU-05337-4684

description: Age: 51, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 2, Overall survival event: DOD or DOC, Overall survival months: 14

tag: tissue


title: WU-05215-13772

description: Age: 79, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 48, Overall survival event: alive, Overall survival months: 48

tag: age

tag: er status

tag: node status

tag: size

value: 2 to 5cm

tag: rfs event

tag: rfs months


title: WU-05191-4583

description: Age: 51, Node status: positive or more nodes, grade: 2, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 46, Overall survival event: DOD or DOC, Overall survival months: 46

tag: reference


title: WU-04532-14540

description: Age: 75, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 53, Overall survival event: alive, Overall survival months: 53

tag: er (1=positive; 0=negative)

tag: grade

tag: overall survival event (0=alive, 1=dod or doc)

tag: pam50 predictions plus claudin-low classification (cell line predictor)

value: LumB

tag: dscores unc337


title: WU-04038-11728

description: Age: 51, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 62, Overall survival event: alive, Overall survival months: 62

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: pgr (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)


title: WU-04984-14260

description: Age: 80, ER status: positive, Node status: positive or more nodes, grade: 2, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 58, Overall survival event: DOD or DOC, Overall survival months: 58

value: relapsed at any site or died of disease

tag: overall survival event

tag: overall survival months

tag: subtype


title: WU-05144-4628

description: Age: 42, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 63, Overall survival event: alive, Overall survival months: 63

tag: age

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: overall suvival months


title: WU-03946-4646

description: Age: 72, ER status: negative, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 15, Overall survival event: DOD or DOC, Overall survival months: 15

tag: tissue


title: WU-04024-15563

description: Age: 93, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 24, Overall survival event: DOD or DOC, Overall survival months: 24

tag: reference

tag: er status

tag: node status

tag: size

tag: rfs event

tag: rfs months


title: WU-03853-8702

description: Age: 73, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 68, Overall survival event: alive, Overall survival months: 68

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)

tag: grade

tag: overall survival event (0=alive, 1=dod or doc)

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: WU-04327-19638

description: Age: 73, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 69, Overall survival event: alive, Overall survival months: 69


title: WU-03839-8678

description: Age: 86, ER status: positive, Node status: positive or more nodes, Size: 2 to 5cm, RFS event: no relapse, RFS months: 69, Overall survival event: DOD or DOC, Overall survival months: 69

tag: age

tag: overall survival event

tag: overall survival months

tag: subtype


title: WU-03791-8701

description: Age: 61, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 62, Overall survival event: alive, Overall survival months: 62

tag: tissue


title: WU-04226-14539

description: Age: 47, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 61, Overall survival event: alive, Overall survival months: 61

tag: reference

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: overall suvival months


title: WU-04834-14541

description: Age: 42, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 65, Overall survival event: alive, Overall survival months: 65

tag: er status

tag: node status

tag: size

tag: rfs event

tag: rfs months


title: WU-04952-4650

description: Age: 64, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 62, Overall survival event: alive, Overall survival months: 62


title: WU-04030-15571

description: Age: 84, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 23, Overall survival event: DOD or DOC, Overall survival months: 23

tag: grade


title: WU-03535-8704

description: Age: 82, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 60, Overall survival event: alive, Overall survival months: 60

tag: age


title: WU-03483-8696

description: Age: 49, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 54, Overall survival event: alive, Overall survival months: 54

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)

tag: overall survival event (0=alive, 1=dod or doc)

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: WU-03885-13768

description: Age: 52, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 8, Overall survival event: DOD or DOC, Overall survival months: 26

tag: reference

tag: tissue


title: WU-03685-9023


title: WU-03700-9024

description: Age: 71, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 73, Overall survival event: alive, Overall survival months: 73

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)


title: WU-05009-4750

description: Age: 48, ER status: positive, Node status: positive or more nodes, grade: 1, Size: 1 to 2cm, RFS event: no relapse, RFS months: 64, Overall survival event: alive, Overall survival months: 64

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: overall suvival months


title: WU-03714-9025

description: Age: 66, ER status: positive, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 72, Overall survival event: alive, Overall survival months: 72


title: WU-03445-10746

description: Age: 52, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: relapsed at any site or died of disease, RFS months: 11, Overall survival event: DOD or DOC, Overall survival months: 55

tag: er status

tag: node status

tag: size

tag: overall survival event

tag: overall survival months

tag: subtype


title: WU-03843-8677

description: Age: 79, ER status: positive, Node status: positive or more nodes, grade: 2, Size: Any size with direct extension to chest wall or skin, RFS event: no relapse, RFS months: 69, Overall survival event: alive, Overall survival months: 69

tag: age

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)

tag: grade

tag: rfs months


title: WU-02873-14598

description: Age: 58, ER status: negative, Node status: positive or more nodes, grade: 2, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 17, Overall survival event: DOD or DOC, Overall survival months: 63

tag: reference

value: larger than 5cm

tag: rfs event

tag: tissue


title: WU-03780-9028

description: Age: 89, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 62, Overall survival event: alive, Overall survival months: 62

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: overall survival event (0=alive, 1=dod or doc)

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: WU-03292-4164

description: Age: 50, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 79, Overall survival event: alive, Overall survival months: 79


title: WU-07512-14264

description: Age: 83, ER status: positive, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 21, Overall survival event: DOD or DOC, Overall survival months: 21


title: WU-03661-9021

description:
Age: 51, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 68, Overall survival event: alive, Overall survival months: 68
Age: 53, ER status: positive, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 3, Overall survival event: DOD or DOC, Overall survival months: 3


title: WU-03064-8693

description: Age: 74, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 70, Overall survival event: alive, Overall survival months: 70


title: WU-02455-13639

description: Age: 44, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 13, Overall survival event: DOD or DOC, Overall survival months: 15


title: WU-02843-15718

description: Age: 46, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 75, Overall survival event: alive, Overall survival months: 75


title: WU-02948-13641

description: Age: 44, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 62, Overall survival event: alive, Overall survival months: 62


title: WU-02799-8688

description: Age: 66, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 61, Overall survival event: alive, Overall survival months: 61

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: overall suvival months


title: WU-02104-2393

description: Age: 57, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 51, Overall survival event: alive, Overall survival months: 51


title: WU-01897-2850

description: Age: 57, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 64, Overall survival event: alive, Overall survival months: 64


title: WU-02689-15567

description: Age: 74, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 76, Overall survival event: alive, Overall survival months: 76


title: WU-02338-8725

description: Age: 42, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 30, Overall survival event: DOD or DOC, Overall survival months: 59


title: WU-02390-8994

description: Age: 46, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 9, Overall survival event: DOD or DOC, Overall survival months: 9


title: WU-01900-2396

description: Age: 72, ER status: positive, Node status: positive or more nodes, grade: 2, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 44, Overall survival event: DOD or DOC, Overall survival months: 45

tag: er status

tag: node status

tag: size

tag: overall survival event

tag: overall survival months

tag: subtype


title: WU-02471-8995

description: Age: 77, ER status: positive, grade: 3, RFS event: relapsed at any site or died of disease, RFS months: 1, Overall survival event: alive, Overall survival months: 72

tag: reference

tag: age

tag: grade

tag: rfs months


title: WU-02771-8997

description: Age: 43, ER status: negative, grade: 3, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 12, Overall survival event: DOD or DOC, Overall survival months: 16

tag: tissue


title: WU-01700-2855

description: Age: 52, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 71, Overall survival event: alive, Overall survival months: 71

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)


title: WU-01792-4141

description: Age: 88, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 35, Overall survival event: DOD or DOC, Overall survival months: 35

tag: rfs event


title: WU-01587-3845

description: Age: 72, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 82, Overall survival event: alive, Overall survival months: 82


title: WU-01790-4138

description: Age: 32, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 15, Overall survival event: alive, Overall survival months: 15


title: WU-01511-2851

description: Age: 50, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 82, Overall survival event: alive, Overall survival months: 82


title: WU-01250-15117

description: Age: 59, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 12, Overall survival event: DOD or DOC, Overall survival months: 12

tag: er status


title: WU-02181-9403

description: Age: 75, ER status: positive, Node status: positive or more nodes, grade: 1, Size: 2 to 5cm, RFS event: no relapse, RFS months: 81, Overall survival event: alive, Overall survival months: 81

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: WU-01680-4160

description: Age: 47, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 77, Overall survival event: alive, Overall survival months: 77

tag: reference


title: WU-01456-3606

description: Age: 65, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 73, Overall survival event: alive, Overall survival months: 73

tag: age


title: WU-01580-3608

description: Age: 59, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 17, Overall survival event: DOD or DOC, Overall survival months: 17

tag: Age

tag: ER status

tag: Node status

tag: grade

tag: Size

tag: RFS event

tag: RFS months

tag: Overall survival event

tag: Overall survival months

tag: subtype


title: WU-01502-2232

description: Age: 74, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 88, Overall survival event: alive, Overall survival months: 88

tag: tissue


title: WU-01540-2385

description: Age: 46, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 20, Overall survival event: DOD or DOC, Overall survival months: 20


title: WU-01407-2859

description: Age: 39, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 80, Overall survival event: alive, Overall survival months: 80


title: WU-02132-3615

description: Age: 57, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 76, Overall survival event: alive, Overall survival months: 76


title: WU-01613-3846

description: Age: 78, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 17, Overall survival event: alive, Overall survival months: 17


title: WU-01500-2231

description: Age: 88, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 70, Overall survival event: alive, Overall survival months: 70

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)


title: WU-01520-2706

description: Age: 58, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 77, Overall survival event: alive, Overall survival months: 77

tag: reference

tag: age

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: WU-00777-4362

description: Age: 44, ER status: positive, Node status: positive or more nodes, grade: 2, Size: larger than 5cm, RFS event: no relapse, RFS months: 100, Overall survival event: alive, Overall survival months: 100

tag: grade


title: WU-00899-4363

description: Age: 47, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 83, Overall survival event: alive, Overall survival months: 83


title: WU-00538-2858

description: Age: 75, Size: 1 to 2cm, RFS event: no relapse, RFS months: 66, Overall survival event: alive, Overall survival months: 66


title: WU-00431-8681

description: Age: 73, ER status: negative, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 44, Overall survival event: DOD or DOC, Overall survival months: 44


title: WU-00328-6067

description: Age: 59, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 82, Overall survival event: alive, Overall survival months: 82


title: Wash U-8699

description: Age: 49, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 102, Overall survival event: alive, Overall survival months: 102

source_name: Wash U-8699


title: WU-00556-4754

description: Age: 46, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 88, Overall survival event: alive, Overall survival months: 88


title: WashU-15692-repeat

description: Age: 63, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 72, Overall survival event: alive, Overall survival months: 72


title: WU-00531-19640

description: Age: 75, ER status: positive, Node status: positive or more nodes, grade: 1, Size: 2 to 5cm, RFS event: no relapse, RFS months: 81, Overall survival event: alive, Overall survival months: 81


title: WU-00821-8991

description: Age: 79, ER status: positive, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: no relapse, RFS months: 29, Overall survival event: alive, Overall survival months: 29

tag: er status

tag: node status

tag: size

tag: rfs event

tag: overall survival event

tag: overall survival months


title: WashU-4365-repeat

description: Age: 71, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 87, Overall survival event: alive, Overall survival months: 87

tag: tissue

tag: subtype


title: WU-00509-19641

description: Age: 57, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 51, Overall survival event: alive, Overall survival months: 51


title: Wash U-6046

description: Age: 54, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 10, Overall survival event: alive, Overall survival months: 10

source_name: Wash U-6046


title: WashU-3589-repeat

description: Age: 64, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 56, Overall survival event: alive, Overall survival months: 56


title: Wash U-8687

description: Age: 73, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 69, Overall survival event: alive, Overall survival months: 69

source_name: Wash U-8687


title: Wash U-13765

description: Age: 75, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 45, Overall survival event: alive, Overall survival months: 45


title: WashU-3604-repeat

description: Age: 49, ER status: positive, Node status: positive or more nodes, grade: 2, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 14, Overall survival event: DOD or DOC, Overall survival months: 27


title: Wash U-4584

description: Age: 29, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 13, Overall survival event: alive, Overall survival months: 13

source_name: Wash U-4584