title: Wash U-13769

description: Age: 49, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: relapsed at any site or died of disease, RFS months: 22, Overall survival event: DOD or DOC, Overall survival months: 24


title: BABE, MYBL2-2, 72h Doxorubicin, Replicate

status: Public on Jan 07 2009

type: RNA

city: Chapel Hill

first: Charles

middle: M.

last: Perou

state: NC

address: 12-044 Lineberger Comprehensive Cancer Center CB# 7295

department: Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center

country: USA

institute: University of North Carolina at Chapel Hill

description: Normal, breast tissue derived, hTERT-immortalized cell line HME-CC

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

scan_protocol: Fluorescent array images were collected for both Cy3 and Cy5 with a GenePix 4000B fluorescent scanner and image intensity data were extracted and analyzed with GenePix Pro 4.1 analysis software.

data_processing: Data for both channels were Lowess-normalized and then log(2) ratio was taken

molecule: polyA RNA

organism: Homo sapiens

source_name: pooled reference mRNA from 4 harvests of HME-CC cells

extract_protocol: Invitrogen Micro-Fast Track 2.0 Kit

source_name: mRNA from HME-CC, pBABE.puro.MYBL2-2, 72h Doxorubicin, Replicate


title: Wash U-4161

status: Public on Feb 11 2009

description: Age: 73, ER status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 78, Overall survival event: alive, Overall survival months: 78

molecule: total RNA

source_name: Human Reference B

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

extract_protocol: Total RNA isolated by stratagene

tag: reference

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Wash U-4161

extract_protocol: Qiagen Rneasy Kit

tag: tissue

value: breast tumor from WashU

tag: age

tag: er status

value: negative

tag: grade

tag: size

value: 2 to 5cm

tag: rfs event

value: no relapse

tag: rfs months

tag: overall survival event

value: alive

tag: overall survival months


title: Wash U-14259

description: Age: 42, ER status: negative, RFS event: relapsed at any site or died of disease, RFS months: 6, Overall survival event: DOD or DOC, Overall survival months: 13

value: relapsed at any site or died of disease

value: DOD or DOC

tag: subtype

value: Basal


title: Wash U-4142

description: Age: 52, ER status: positive, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 67, Overall survival event: alive, Overall survival months: 67

source_name: Wash U-4142


title: BABE, MYBL2-2, 72h Doxorubicin, Replicate-2

tag: pooled reference mRNA from 4 harvests of HME-CC cells

source_name: mRNA from HME-CC, pBABE.puro.MYBL2-2, 72h Doxorubicin, Replicate-2


title: UNC-020464B-core

description: Age: 44, ER status: positive, Node status: positive or more nodes, grade: 1, Size: 2 to 5cm, RFS event: no relapse, RFS months: 2, Overall survival event: alive, Overall survival months: 2

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

extract_protocol: Total RNA isolated by Stratagene.

source_name: Tissue: Breast Tumor, Subtype: LumA

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

value: LumA

tag: dscores unc337


title: BABE, MYBL2, 72h Doxorubicin, Replicate

source_name: mRNA from HME-CC, pBABE.puro.MYBL2, 72h Doxorubicin, Replicate


title: BABE, MYBL2-2, 72h Doxorubicin

source_name: mRNA from HME-CC, pBABE.puro.MYBL2-2, 72h Doxorubicin


title: 00-0161B-Genomic-Core

description: Breast Tumor.

tag: reference

source_name: Breast Tumor

tag: age

tag: grade


title: BABE, MYBL2, 72h Doxorubicin

source_name: mRNA from HME-CC, pBABE.puro.MYBL2, 72h Doxorubicin


title: WU-01249-15116

description: Age: 61, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 28, Overall survival event: DOD or DOC, Overall survival months: 28

tag: er status

value: positive

tag: node status

value: positive or more nodes

tag: size

tag: rfs event

tag: rfs months

tag: overall survival event

tag: tissue


title: BABE, EMPTY-2, 72h Doxorubicin, Replicate-2

tag: pooled reference mRNA from 4 harvests of HME-CC cells

source_name: mRNA from HME-CC, pBABE.puro.EMPTY-2, 72h Doxorubicin, Replicate-2


title: BABE, EMPTY-2, 72h Doxorubicin, Replicate

source_name: mRNA from HME-CC, pBABE.puro.EMPTY-2, 72h Doxorubicin, Replicate


title: BABE, EMPTY, 72h Doxorubicin, Replicate

source_name: mRNA from HME-CC, pBABE.puro.EMPTY, 72h Doxorubicin, Replicate


title: UNC-030370B

status: Public on Sep 18 2008

description: Breast Tumor. Age: 42, ER status: positive, Node status: positive, 1 node, grade: 1, Size: Any size with direct extension to chest wall or skin, RFS event: no relapse, RFS months: 30, Overall survival event: alive, Overall survival months: 30

source_name: Tissue: Breast Tumor, Subtype: Claudin

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

value: Claudin


title: BABE, EMPTY-2, 72h Doxorubicin

source_name: mRNA from HME-CC, pBABE.puro.EMPTY-2, 72h Doxorubicin


title: 9830-030399B-C

description: Breast Tumor.

tag: subtype

value: LumB


title: A10-1 R.BreastT-C

description: Autopsy patient #10 primary tumor.

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: A10-1 R.BreastT-C

tag: Autopsy patient #10 primary tumor


title: 9830-030584B-C

description: Breast Tumor.

tag: Breast Tumor


title: UNC-010532B-core

description: Age: 47, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 7, Overall survival event: DOD or DOC, Overall survival months: 14

tag: reference

source_name: Tissue: Breast Tumor, Subtype: BaTissue: Breast Tumor, Sal

tag: age

tag: grade

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: 9830-030619B-C

description: Breast Tumor.

source_name: Human Reference B


title: 9830-040072B-C

description: Breast Tumor.


title: BABE, EMPTY, 72h Doxorubicin

source_name: pooled reference mRNA from 4 harvests of HME-CC cells

source_name: mRNA from HME-CC, pBABE.puro.EMPTY, 72h Doxorubicin


title: UNC-030528B-New

description: Breast Tumor.


title: BC00085-new

description: Breast Tumor.


title: UNC-030183B-New

description: Breast Tumor.


title: BR97-0137-Custom

description: Breast Tumor.


title: 9830-010218B

description: Breast Tumor.


title: MIXED_Wap_Cre_ETV6_NTRK3_D481_ORKIN

status: Public on Apr 07 2008

organism: Mus musculus

source_name: Mouse Reference

tag: Whole mouse total RNA

tag: primary mammary tumor


title: BC00094-new

description: Breast Tumor.


title: 9830-030363B-C

description: Breast Tumor.


title: MIXED_Wap_Cre_ETV6_NTRK3_E93T1_ORKIN


title: MIXED_Wap_Cre_ETV6_NTRK3_D279T1_ORKIN


title: MIXED_Wap_Cre_ETV6_NTRK3_D14T2_ORKIN


title: MIXED_Wap_Cre_ETV6_NTRK3_D203T1_ORKIN


title: MIXED_Wap_Cre_ETV6_NTRK3_D254T1_ORKIN


title: BR94-0187

description: Breast Tumor.


title: MIXED_Wap_Cre_ETV6_NTRK3_CR90-1_ORKIN


title: MIXED_Wap_Cre_ETV6_NTRK3_D14T1_ORKIN


title: MIXED_Wap_Cre_ETV6_NTRK3_C395T5_ORKIN


title: MIXED_Wap_Cre_ETV6_NTRK3_C393T1_ORKIN


title: MIXED_Wap_Cre_ETV6_NTRK3_CR115_ORKIN


title: MIXED_Wap_Cre_ETV6_NTRK3_C117T1_ORKIN


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T646_BULTMAN)

status: Public on Jan 18 2008

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124"


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T920_BULTMAN)

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124"


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T2134_BULTMAN)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T284_BULTMAN)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T176_BULTMAN)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T2023_BULTMAN)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T284_BULTMAN_biorep)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T372_BULTMAN)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T55_BULTMAN)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T221_BULTMAN)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T172_BULTMAN_biorep)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T172_BULTMAN)


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T160_BULTMAN)


title: EL3-148_Bio_088V0

status: Public on Jan 12 2008

description: Pretreatment Breast tumor from Neoadjuvant Trial, Intrinsic Subtype: Basal

tag: Pretreatment Breast tumor from Neoadjuvant Trial;Treatment_cohort

value: Gemcitabine plus Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:no;Pathological complete response:no;Intrinsic subtype:Basal;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:3+


title: EL3-190_Bio_091V0

value: Doxorubicin;Overall best response:PD (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:no;Pathological complete response:no;Intrinsic subtype:Basal;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:negative;PR_status:positive;HER2_status:0


title: EL3-155_Bio_090V0

description: Pretreatment Breast tumor from Neoadjuvant Trial, Intrinsic Subtype: LumA

value: Doxorubicin;Overall best response:PD (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:no;Pathological complete response:no;Intrinsic subtype:LumA;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:negative;HER2_status:1+


title: EL3-240_Bio_093V0

value: Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:LumA;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:0


title: EL3-134_Bio_086V0

value: Gemcitabine plus Doxorubicin;Overall best response:Not Assessed;Completed therapy:no;Pathological complete response:Not Assessed;Intrinsic subtype:LumA;Staging_TNM:T4N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:0


title: EL3-036_Bio_084V0

description: Pretreatment Breast tumor from Neoadjuvant Trial, Intrinsic Subtype: Her2

value: Gemcitabine;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:CR before last cycle;Pathological complete response:no;Intrinsic subtype:Her2;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:negative;PR_status:negative;HER2_status:3+


title: EL3-007_Bio_081V0

value: Gemcitabine;Overall best response:Not Assessed;Completed therapy:Not Assessed;Pathological complete response:Not Assessed;Intrinsic subtype:LumA;Staging_TNM:T4N0;Pathological Diagnosis:Ductal;Tumor grade:poorly differentiated;ER_status:positive;PR_status:negative;HER2_status:Not detected


title: EL3-002_Bio_083V0

value: Gemcitabine;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:Her2;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:negative;PR_status:positive;HER2_status:Not detected


title: EL2-182_Bio_062V0

value: Gemcitabine plus Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumA;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:0


title: EL2-184_Bio_060V0

value: Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:Her2;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:Not Assessed;PR_status:Not Assessed;HER2_status:Not Assessed


title: EL2-230_Bio_065V0

value: Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumA;Staging_TNM:T4N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:0


title: Brg1+/- murine mammary tumor (MIXED_Brg1het_T135_BULTMAN)


title: EL3-150_Bio_089V0

value: Doxorubicin;Overall best response:PD (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:no;Pathological complete response:Not Assessed;Intrinsic subtype:Basal;Staging_TNM:T4N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:negative;PR_status:positive;HER2_status:1+


title: EL2-173_Bio_059V0

value: Doxorubicin;Overall best response:Not Assessed;Completed therapy:Not Assessed;Pathological complete response:Not Assessed;Intrinsic subtype:Her2;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:negative;PR_status:negative;HER2_status:3+


title: EL2-169_Bio_061V0

value: Doxorubicin;Overall best response:PD (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:Her2;Staging_TNM:T3N0;Pathological Diagnosis:Other;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:2+


title: EL2-172_Bio_058V0

value: Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:Her2;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:1+


title: EL2-118_Bio_054V0

value: Gemcitabine plus Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:LumA;Staging_TNM:T4N1;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:0


title: EL2-107_Bio_053V0

value: Gemcitabine plus Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:CR before last cycle;Pathological complete response:Not Assessed;Intrinsic subtype:Her2;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:3+


title: EL2-063_Bio_047V0

value: Gemcitabine;Overall best response:PD (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:no;Pathological complete response:no;Intrinsic subtype:Basal;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:negative;PR_status:negative;HER2_status:0


title: EL2-121_Bio_057V0

value: Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumA;Staging_TNM:T2N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:0


title: EL2-061_Bio_049V0

value: Gemcitabine plus Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:LumA;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:negative;HER2_status:3+


title: EL2-030_Bio_040V0

value: Gemcitabine;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:no;Pathological complete response:Not Assessed;Intrinsic subtype:Basal;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:negative;HER2_status:1+


title: EL2-025_Bio_043V0

value: Gemcitabine;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:Basal;Staging_TNM:T2N0;Pathological Diagnosis:Other;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:3+


title: EL2-050V0

value: Gemcitabine;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:CR before last cycle;Pathological complete response:yes;Intrinsic subtype:Basal;Staging_TNM:T4N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:negative;HER2_status:1+


title: EL1-261_Bio_028V0

value: Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:Basal;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:Not detected


title: EL2-048_Bio_045V0

value: Gemcitabine;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:Her2;Staging_TNM:T2N1;Pathological Diagnosis:Ductal;Tumor grade:well differentiated;ER_status:negative;PR_status:negative;HER2_status:3+


title: EL1-162_Bio_020V0

value: Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:CR before last cycle;Pathological complete response:yes;Intrinsic subtype:Basal;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:negative;PR_status:negative;HER2_status:0


title: EL1-205_Bio_026V0

value: Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:no;Pathological complete response:Not Assessed;Intrinsic subtype:Basal;Staging_TNM:T4N1;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:positive;PR_status:positive;HER2_status:0


title: EL1-163_Bio_021V0

value: Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:Basal;Staging_TNM:T4N1;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:positive;PR_status:positive;HER2_status:0


title: EL1-164_Bio_019V0

description: Pretreatment Breast tumor from Neoadjuvant Trial, Intrinsic Subtype: LumB

value: Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumB;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:poorly differentiated;ER_status:negative;PR_status:negative;HER2_status:0


title: EL1-263_Bio_025V0

value: Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:CR before last cycle;Pathological complete response:no;Intrinsic subtype:LumA;Staging_TNM:T4N2;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:positive;PR_status:positive;HER2_status:Not detected


title: EL1-254_Bio_027V0

value: Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:Basal;Staging_TNM:T2N1;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:0


title: EL1-137_Bio_016V0

value: Gemcitabine plus Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:Basal;Staging_TNM:T4N1;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:0


title: EL1-088_Bio_008V0

value: Gemcitabine;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumB;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:3+


title: EL1-016_Tissue_004V0

value: Gemcitabine;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumA;Staging_TNM:T4N2;Pathological Diagnosis:Ductal;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:0


title: EL3-008_Bio_082V0

value: Gemcitabine;Overall best response:Not Assessed;Completed therapy:no;Pathological complete response:Not Assessed;Intrinsic subtype:LumA;Staging_TNM:T3N0;Pathological Diagnosis:Papillary breast carcinoma;Tumor grade:moderately differentiated;ER_status:positive;PR_status:positive;HER2_status:Not detected


title: EL1-194-022V0

value: Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumA;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:positive;PR_status:positive;HER2_status:0


title: EL1-126_Bio_011V0

value: Gemcitabine plus Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:yes;Intrinsic subtype:Basal;Staging_TNM:T4N0;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:0


title: EL1-193_Bio_023V0

value: Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumA;Staging_TNM:T3N0;Pathological Diagnosis:Mucinous breast carcinoma;Tumor grade:unknown;ER_status:positive;PR_status:positive;HER2_status:3+


title: El1-093_Bio_010V0

value: Gemcitabine plus Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:no;Pathological complete response:Not Assessed;Intrinsic subtype:LumA;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:positive;PR_status:positive;HER2_status:0


title: EL1-140_Bio_015V0

value: Gemcitabine plus Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:Basal;Staging_TNM:T3N1;Pathological Diagnosis:Other;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:Not detected


title: EL1-012-Bio-003V0

description: Pretreatment Breast tumor from Neoadjuvant Trial, Intrinsic Subtype: Normal

value: Gemcitabine;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:Normal;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:positive;PR_status:positive;HER2_status:1+


title: EL1-157_Bio_018V0

value: Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:CR before last cycle;Pathological complete response:no;Intrinsic subtype:Basal;Staging_TNM:T2N1;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:3+


title: EL1-124_Bio_014V0

value: Gemcitabine plus Doxorubicin;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumA;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:positive;PR_status:positive;HER2_status:2+


title: EL1-014_Tissue_001V0

value: Gemcitabine;Overall best response:CR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:LumB;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:poorly differentiated;ER_status:negative;PR_status:negative;HER2_status:3+


title: E1-086_Bio_009V0

value: Gemcitabine;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:Basal;Staging_TNM:T3N0;Pathological Diagnosis:Ductal;Tumor grade:poorly differentiated;ER_status:negative;PR_status:negative;HER2_status:0


title: SUM102, 48h, LY294002 4h post

status: Public on Aug 20 2007

description: Basal-like breast tumor derived cell line SUM102

source_name: mRNA from SUM102, 48h, LY294002

extract_protocol: Invitrogen Micro-Fast Track Kit

tag: mRNA from SUM102, 48h, LY294002

source_name: mRNA from SUM102, 48h, LY294002 4h post

tag: mRNA from SUM102, 48h, LY294002 4h post


title: SUM102, 48h, U0126 24h post 3

source_name: mRNA from SUM102, 48h, U0126

tag: mRNA from SUM102, 48h, U0126

source_name: mRNA from SUM102, 48h, U0126 24h post 3

tag: mRNA from SUM102, 48h, U0126 24h post 3


title: SUM102, 48h, U0126 4h post

source_name: mRNA from SUM102, 48h, U0126 4h post

tag: mRNA from SUM102, 48h, U0126 4h post


title: SUM102, 48h, LY294002 8h post 2

source_name: mRNA from SUM102, 48h, LY294002 8h post 2


title: MB77-custom

description: Agilent Custom Replicate Array of MB77-v1 (GSM50139); Singe Sample Predictor Subtype: Luminal A

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: Breast Tumor that has been replicated on a custom designed microarray


title: SUM102, 48h, U0126 4h post 2

source_name: mRNA from SUM102, 48h, U0126 4h post 2

tag: mRNA from SUM102, 48h, U0126 4h post 2


title: SUM102, 48h, U0126 24h post

source_name: mRNA from SUM102, 48h, U0126 24h post

tag: mRNA from SUM102, 48h, U0126 24h post


title: SUM102, 48h, LY294002 24h post 3

source_name: mRNA from SUM102, 48h, LY294002 24h post 3


title: SUM102, 48h, U0126 24h post 2

source_name: mRNA from SUM102, 48h, U0126 24h post 2

tag: mRNA from SUM102, 48h, U0126 24h post 2


title: SUM102, 48h, U0126 2

source_name: pooled reference mRNA from 4 harvests of SUM102 cells

source_name: mRNA from SUM102, 48h, U0126 2

tag: mRNA from SUM102, 48h, U0126 2


title: SUM102, 48h, Gefitinib 3

tag: pooled reference mRNA from 4 harvests of SUM102 cells

source_name: mRNA from SUM102, 48h, Gefitinib 3

tag: mRNA from SUM102, 48h, Gefitinib 3


title: SUM102, 48h, Gefitinib 4h post 2

source_name: mRNA from SUM102, 48h, Gefitinib

tag: mRNA from SUM102, 48h, Gefitinib

source_name: mRNA from SUM102, 48h, Gefitinib 4hp v 48h Gefitinib 2


title: SUM102, 48h, LY294002


title: SUM102, 48h, Gefitinib 8h post

source_name: mRNA from SUM102, 48h, Gefitinib 8hp v 48h Gefitinib


title: SUM102, 48h, U0126 3

source_name: mRNA from SUM102, 48h, U0126 3

tag: mRNA from SUM102, 48h, U0126 3


title: SUM102, 48h, LY294002 3

source_name: mRNA from SUM102, 48h, LY294002 3

tag: mRNA from SUM102, 48h, LY294002 3


title: SUM102, 48h, U0126


title: SUM102, 48h, LY294002 4h post 2

source_name: mRNA from SUM102, 48h, LY294002

source_name: mRNA from SUM102, 48h, LY294002 4h post 2


title: SUM102, 48h, Gefitinib 8h post 2

source_name: mRNA from SUM102, 48h, Gefitinib 8hp v 48h Gefitinib 2


title: SUM102, 48h, LY294002 2

source_name: mRNA from SUM102, 48h, LY294002 2

tag: mRNA from SUM102, 48h, LY294002 2


title: SUM102, 48h, Gefitinib 24h post 3

source_name: mRNA from SUM102, 48h, Gefitinib 24hp v 48h Gefitinib 3


title: SUM102, 48h, U0126 8h post

source_name: mRNA from SUM102, 48h, U0126

source_name: mRNA from SUM102, 48h, U0126 8h post

tag: mRNA from SUM102, 48h, U0126 8h post


title: SUM102, 48h, LY294002 8h post

tag: mRNA from SUM102, 48h, LY294002

source_name: mRNA from SUM102, 48h, LY294002 8h post

tag: mRNA from SUM102, 48h, LY294002 8h post


title: SUM102, 48h, U0126 8h post 2

tag: mRNA from SUM102, 48h, U0126

source_name: mRNA from SUM102, 48h, U0126 8h post 2

tag: mRNA from SUM102, 48h, U0126 8h post 2


title: SUM102, 48h, Gefitinib 4h post

source_name: mRNA from SUM102, 48h, Gefitinib 4hp v 48h Gefitinib


title: SUM102, 48h, LY294002 24h post

source_name: mRNA from SUM102, 48h, LY294002 24h post


title: SUM102, 48h, LY294002 24h post 2

source_name: mRNA from SUM102, 48h, LY294002 24h post 2


title: SUM102, 48h, Gefitinib DF

source_name: mRNA from SUM102, 48h, Gefitinib

source_name: pooled reference mRNA from 4 harvests of SUM102 cells


title: SUM102, 48h, Gefitinib 24h post 2

source_name: mRNA from SUM102, 48h, Gefitinib 24hp v 48h Gefitinib 2


title: EL1-131_Bio_013V0

source_name: Human Reference B

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: Pretreatment Breast tumor from Neoadjuvant Trial;Treatment_cohort

value: Gemcitabine plus Doxorubicin;Overall best response:PR (As assessed by SWOG criteria, Green et al., Invest New Drugs 10:239-253 (1992));Completed therapy:yes;Pathological complete response:no;Intrinsic subtype:Her2;Staging_TNM:T3N1;Pathological Diagnosis:Ductal;Tumor grade:unknown;ER_status:negative;PR_status:negative;HER2_status:3+


title: SUM102, 48h, Cetuximab 4h post 2

source_name: mRNA from SUM102, 48h, Cetuximab

tag: mRNA from SUM102, 48h, Cetuximab

source_name: mRNA from SUM102, 48h, Cetuximab 4hp v 48h Cetuximab 2


title: SUM102, 48h, Cetuximab 24h post 2

source_name: mRNA from SUM102, 48h, Cetuximab 24hp v 48h Cetuximab 2


title: SUM102, 48h, U0126+LY294002 4h, post 2

source_name: mRNA from SUM102, 48h U0126+LY294002 4h post 2


title: SUM102, 48h, Cetuximab 3

source_name: mRNA from SUM102, 48h, Cetuximab 3

tag: mRNA from SUM102, 48h, Cetuximab 3


title: SUM102, 48h, U0126+LY294002 4h, post

source_name: mRNA from SUM102, 48h U0126+LY294002 4h post


title: SUM102, 48h, Gefitinib 24h post

source_name: mRNA from SUM102, 48h, Gefitinib 24hp v 48h Gefitinib


title: SUM102, 48h, Cetuximab 8h post

source_name: mRNA from SUM102, 48h, Cetuximab 8hp v 48h Cetuximab


title: SUM102, 48h, Cetuximab


title: SUM102, 48h, Cetuximab 4h post

source_name: mRNA from SUM102, 48h, Cetuximab 4hp v 48h Cetuximab


title: SUM102, 48h, Gefitinib 2

source_name: mRNA from SUM102, 48h, Gefitinib 2

tag: mRNA from SUM102, 48h, Gefitinib 2


title: SUM102, 48h, Cetuximab DF


title: UNC-040227B-core

description: Age: 61; ER status: positive; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 18; OS Event:alive; OS months: 18; Singe Sample Predictor Subtype: Luminal A

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: reference

source_name: Breast Tumor

tag: age

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: grade

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

value: LumA

tag: dscores unc337


title: UNC-040269B

description: Age: 46, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 17, Overall survival event: alive, Overall survival months: 17

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs


title: UNC-040161B

description: Age: 35; ER status: negative; Node status: positive; Grade: 3; Size: >2cm to <=5cm; RFS event: relapsed or DOD; RFS months: 7; OS Event:DOD or DOC; OS months: 13; Singe Sample Predictor Subtype: Normal-like

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: Breast Tumor


title: SUM102, 48h, Cetuximab 24h post

tag: mRNA from SUM102, 48h, Cetuximab

source_name: mRNA from SUM102, 48h, Cetuximab 24hp v 48h Cetuximab


title: SUM102, 48h, U0126+LY294002 8h, post 2

source_name: mRNA from SUM102, 48h U0126+LY294002 8h post 2


title: SUM102, 48h, U0126+LY294002 2

source_name: pooled reference mRNA from 4 harvests of SUM102 cells


title: UNC-040191B-core

description: Age: 86, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 15, Overall survival event: DOD or DOC, Overall survival months: 15

tag: reference


title: UNC-040114B-core

description: Age: 56, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 16, Overall survival event: alive, Overall survival months: 16

tag: age

value: LumB


title: SUM102, 48h, U0126+LY294002

tag: pooled reference mRNA from 4 harvests of SUM102 cells


title: UNC-040182B

description: Age: 88, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 16, Overall survival event: alive, Overall survival months: 16

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)


title: SUM102, 48h, U0126+LY294002 24h, post 2

source_name: mRNA from SUM102, 48h U0126+LY294002 24h post 2


title: SUM102, 48h, Cetuximab 24h post 3

source_name: mRNA from SUM102, 48h, Cetuximab 24hp v 48h Cetuximab 3


title: SUM102, 48h, Cetuximab 2

source_name: mRNA from SUM102, 48h, Cetuximab 2

tag: mRNA from SUM102, 48h, Cetuximab 2


title: SUM102, 48h, U0126+LY294002 8h, post

source_name: mRNA from SUM102, 48h U0126+LY294002 8h post


title: SUM102, 48h, U0126+LY294002 24h, post

source_name: mRNA from SUM102, 48h U0126+LY294002 24h post


title: UNC-040211B

description: Age: 44; ER status: positive; Node status: negative; Grade: 1; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 18; OS Event:alive; OS months: 18; Singe Sample Predictor Subtype: Luminal B

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: grade

value: Basal


title: UNC-040134B

description: Age: 65; ER status: positive; Node status: negative; Grade: 2; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 20; OS Event:alive; OS months: 20; Singe Sample Predictor Subtype: LumA

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months


title: UNC-040011B

description: Age: 77; ER status: positive; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: relapsed or DOD; RFS months: 19; OS Event:DOD or DOC; OS months: 19; Singe Sample Predictor Subtype: Normal-like

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

value: Claudin


title: UNC-030628B

description: Age: 66; ER status: positive; Node status: negative; Grade: 2; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 26; OS Event:alive; OS months: 26; Singe Sample Predictor Subtype: Normal-like

source_name: Human Reference B

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: Breast Tumor


title: UNC-030528B

description: Age: 65, ER status: negative, Node status: positive or more nodes, grade: 3, RFS event: no relapse, RFS months: 67, Overall survival event: alive, Overall survival months: 67

tag: reference

tag: dscores unc337


title: UNC-030459B

description: Age: 30, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 28, Overall survival event: alive, Overall survival months: 37

tag: age


title: UNC-030429B-core

description: Age: 32; ER status: positive; Node status: positive; Grade: 3; Size: any size with direct extension to chest wall or skin; RFS event: relapsed or DOD; RFS months: 36; OS Event:alive; OS months: 173; Singe Sample Predictor Subtype: Luminal B

tag: er  (1=positive; 0=negative)


title: UNC-020320B

description: Age: 82; ER status: positive; Node status: negative; Grade: 2; Size: >5cm; RFS event: no relapse; RFS months: 41; OS Event:alive; OS months: 41; Singe Sample Predictor Subtype: Luminal A

tag: pgr  (1=positive; 0=negative)


title: UNC-020297B

description: Age: 83, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 26, Overall survival event: alive, Overall survival months: 26


title: UNC-020568B

description: Age: 57; ER status: positive; Node status: positive; Grade: 3; Size: >2cm to <=5cm; RFS event: relapsed or DOD; RFS months: 2; OS Event:alive; OS months: 12; Singe Sample Predictor Subtype: Basal-like

value: Normal


title: UNC-030408B-core

description: Age: 37, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 10, Overall survival event: alive, Overall survival months: 25


title: UNC-020439B

description: Age: 53, ER status: positive, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 16, Overall survival event: DOD or DOC, Overall survival months: 16


title: UNC-020510B..

description: Age: 61; ER status: negative; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 34; OS Event:alive; OS months: 34; Singe Sample Predictor Subtype: Basal-like


title: UNC-020306B

description: Age: 42, ER status: positive, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 22, Overall survival event: DOD or DOC, Overall survival months: 22


title: UNC-030183B

description: Age: 54; ER status: positive; Node status: positive; Grade: 3; Size: >2cm to <=5cm; RFS event: relapsed or DOD; RFS months: 74; OS Event:DOD or DOC; OS months: 88; Singe Sample Predictor Subtype: Normal-like


title: UNC-010355B

description: Age: 60; ER status: negative; Node status: negative; Grade: 1; Size: <= 2cm; RFS event: no relapse; RFS months: 12; OS Event:alive; OS months: 12; Singe Sample Predictor Subtype: Luminal A


title: UB-99

description: Age: 50, ER status: positive, Node status: positive or more nodes, grade: 2, Size: Any size with direct extension to chest wall or skin, RFS event: no relapse, RFS months: 17, Overall survival event: alive, Overall survival months: 17

tag: Breast Tumor, with paired metastasis sample


title: UNC-020578B

description: Age: 76, ER status: negative, Node status: positive or more nodes, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 3, Overall survival event: DOD or DOC, Overall survival months: 5

tag: her2 clinical status ihc/fish (1=positive; 0=negative)


title: UNC-020155B

description: Age: 38, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 31, Overall survival event: alive, Overall survival months: 42

tag: node status (1=positive=1 or more nodes+; 0=negative)


title: UNC-020428B

description: Age: 79; ER status: positive; Node status: positive; Grade: 1; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 22; OS Event:alive; OS months: 22; Singe Sample Predictor Subtype: Luminal B

tag: grade


title: UNC-010208B

description: Age: 50; ER status: negative; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 51; OS Event:alive; OS months: 51; Singe Sample Predictor Subtype: Basal-like

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)


title: UNC-030065B

description: Age: 66; ER status: negative; Node status: negative; Grade: 3; Size: any size with direct extension to chest wall or skin; RFS event: relapsed or DOD; RFS months: 25; OS Event:DOD or DOC; OS months: 28; Singe Sample Predictor Subtype: Normal-like

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)


title: UNC-010224B

description: Age: 70, ER status: positive, Node status: positive or more nodes, grade: 2, Size: larger than 5cm, RFS event: no relapse, RFS months: 50, Overall survival event: alive, Overall survival months: 50

tag: rfs months


title: UB-99LN

description: Singe Sample Predictor Subtype: Luminal A

tag: Breast Tumor lymph node metastasis, with paired primary tumor


title: UNC-020242B

description: Age: 49, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 31, Overall survival event: alive, Overall survival months: 31

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months


title: UB-91

description: Age: 77, ER status: positive, Node status: positive or more nodes, grade: 1, Size: 1 to 2cm, RFS event: no relapse, RFS months: 13, Overall survival event: alive, Overall survival months: 13

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs


title: UNC-000279B

description: Age: 51; ER status: negative; Node status: negative; Grade: 3; Size: <= 2cm; RFS event: no relapse; RFS months: 41; OS Event:alive; OS months: 41; Singe Sample Predictor Subtype: Normal-like

tag: pam50 predictions plus claudin-low classification (cell line predictor)


title: UNC-010318B

description: Age: 69, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 42, Overall survival event: alive, Overall survival months: 42

tag: reference


title: UB-95

description: Age: 38; ER status: positive; node status: negative; grade: 3; size: >2cm to <= 5cm; RFS event: no event; RFS months: 16; OS event: alive; OS months: 16

tag: Breast Tumor


title: UB-94

description: Age: 67; ER status: ; Node status: negative; Grade: 2; Size: <= 2cm; RFS event: no relapse; RFS months: 22; OS Event:alive; OS months: 22; Singe Sample Predictor Subtype: Normal-like

tag: age

tag: dscores unc337


title: UNC-010509B

description: Age: 84, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 46, Overall survival event: alive, Overall survival months: 46

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)


title: UB-88

description: Age: 69, ER status: positive, Node status: positive or more nodes, grade: 2, Size: larger than 5cm, RFS event: no relapse, RFS months: 19, Overall survival event: alive, Overall survival months: 19


title: UB-87

description: Age: 50; ER status: positive; Node status: negative; Grade: 2; Size: <= 2cm; RFS event: no relapse; RFS months: 14; OS Event:alive; OS months: 14; Singe Sample Predictor Subtype: Luminal A


title: SUM102, 48h, Cetuximab 8h post 2

description: Basal-like breast tumor derived cell line SUM102

source_name: mRNA from SUM102, 48h, Cetuximab

tag: mRNA from SUM102, 48h, Cetuximab

source_name: mRNA from SUM102, 48h, Cetuximab 8hp v 48h Cetuximab 2


title: UB-81L

description: Age: 65, ER status: positive, Node status: positive or more nodes, grade: 2, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 22, Overall survival event: alive, Overall survival months: 22

tag: Breast Tumor from a patient with 2 primaries


title: UB-81R

description: Age: 65; ER status: positive; Node status: positive; Grade: 2; Size: >5cm; RFS event: relapsed or DOD; RFS months: 22; OS Event:alive; OS months: 22; Singe Sample Predictor Subtype: Luminal A; from patient with two primaries


title: UB-116

description: Age: 67, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 8, Overall survival event: alive, Overall survival months: 8


title: UB23_C

description: Age: 45, ER status: negative, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: relapsed at any site or died of disease, RFS months: 25, Overall survival event: alive, Overall survival months: 25

tag: Age

tag: ER status

value: negative

tag: Node status

value: positive or more nodes

tag: grade

tag: Size

value: 1 to 2cm

tag: RFS event

value: relapsed at any site or died of disease

tag: RFS months

tag: Overall survival event

value: alive

tag: Overall survival months

tag: subtype


title: UB-120

description: Age: 72, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 4, Overall survival event: alive, Overall survival months: 4

tag: reference

value: positive

value: 2 to 5cm

value: no relapse


title: UB-82

description: Age: 42, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 21, Overall survival event: alive, Overall survival months: 21

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: Breast Tumor


title: UB-117

description: Age: 73, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 6, Overall survival event: alive, Overall survival months: 6


title: UB-85

description: Age: 71; ER status: positive; Node status: negative; Grade: 2; Size: <= 2cm; RFS event: no relapse; RFS months: 26; OS Event:alive; OS months: 26; Singe Sample Predictor Subtype: Normal-like


title: UB49

description: Singe Sample Predictor Subtype: HER2?


title: UB131

description: Age: 50, grade: 3, Size: 1 to 2cm


title: MB86

description: Age: 72; ER status: negative; Node status: positive; Grade: 3; Size: ; RFS event: relapsed or DOD; RFS months: 15; OS Event:alive; OS months: 41; Singe Sample Predictor Subtype: Basal-like


title: MB82

description: Age: 67; ER status: positive; Node status: positive; Grade: 2; Size: <= 2cm; RFS event: ; RFS months: ; OS Event:; OS months: ; Singe Sample Predictor Subtype: Luminal A


title: UB-118

description: Age: 64; ER status: positive; Node status: positive; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 2; OS Event:alive; OS months: 2; Singe Sample Predictor Subtype: Normal-like


title: UB-100

description: Age: 50, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 13, Overall survival event: alive, Overall survival months: 13


title: 9819-990631B

description: Age: 51; ER status: negative; Node status: positive; Grade: 3; Size: >5cm; RFS event: relapsed or DOD; RFS months: 19; OS Event:DOD or DOC; OS months: 29; Singe Sample Predictor Subtype: HER2?; Treatment: AC_T; Overall Response: PR; pCR: no


title: BC00017-N

description: Singe Sample Predictor Subtype: Luminal A

tag: normal breast sample from patient BC00017-T


title: 9830-020027B

description: Age: 64; ER status: positive; Node status: negative; Grade: 3; Size: <= 2cm; RFS event: no relapse; RFS months: 48; OS Event:alive; OS months: 48; Singe Sample Predictor Subtype: Normal-like


title: BR95-0002B

description: Age: ; ER status: ; Node status: ; Grade: ; Size: ; RFS event: relapsed or DOD; RFS months: 20; OS Event:DOD or DOC; OS months: 30; Singe Sample Predictor Subtype: Luminal B


title: A9-1 Liver Tumor

source_name: A9-1 Liver Tumor

tag: Autopsy patient #9 Liver metastasis from breast


title: PB278


title: UB-110

description: Age: 77, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 16, Overall survival event: alive, Overall survival months: 16


title: 9819-990067

description: Age: 31; ER status: positive; Node status: positive; Grade: 3; Size: any size with direct extension to chest wall or skin; RFS event: relapsed or DOD; RFS months: 31; OS Event:alive; OS months: 77; Singe Sample Predictor Subtype: Luminal B; Treatment: AC_T; Overall Response: SD; pCR: no


title: 9830-010038B

description: Age: 48; ER status: negative; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 58; OS Event:alive; OS months: 58; Singe Sample Predictor Subtype: Normal-like


title: Normal-Str574-100%

description: Singe Sample Predictor Subtype: Normal-like


title: BC00019

description: Age: 50; ER status: ; Node status: ; Grade: ; Size: ; RFS event: relapsed or DOD; RFS months: 96; OS Event:alive; OS months: 100; Singe Sample Predictor Subtype: Normal-like


title: 9819-050225-SF1

description: Singe Sample Predictor Subtype: Luminal B


title: 9819-990178B

description: Age: 58; ER status: positive; Node status: negative; Grade: 1; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 68; OS Event:alive; OS months: 68; Singe Sample Predictor Subtype: Normal-like; Treatment: AC; Overall Response: SD; pCR: no


title: 9819-990126B

description: Age: 39; ER status: negative; Node status: positive; Grade: 3; Size: >5cm; RFS event: no relapse; RFS months: 6; OS Event:alive; OS months: 6; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: N/A; pCR: no


title: MB84

description: Age: 55; ER status: ; Node status: negative; Grade: 2; Size: >2cm to <=5cm; RFS event: ; RFS months: ; OS Event:; OS months: ; Singe Sample Predictor Subtype: Luminal A


title: 9819-050111B

description: Singe Sample Predictor Subtype: Basal-like


title: 9819-040617

description: Age: 52; ER status: positive; Node status: positive; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 13; OS Event:alive; OS months: 13; Singe Sample Predictor Subtype: HER2?; Treatment: AC_T; Overall Response: N/A; pCR: no


title: 9819-040599


title: 9819-040050

description: Age: 35; ER status: negative; Node status: positive; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 18; OS Event:alive; OS months: 18; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: CR; pCR: no


title: 9819-020484

description: Age: 60; ER status: positive; Node status: positive; Grade: 2; Size: >5cm; RFS event: no relapse; RFS months: 29; OS Event:alive; OS months: 29; Singe Sample Predictor Subtype: Luminal A; Treatment: AC_T; Overall Response: PR; pCR: no


title: 9819-020475

description: Age: 77; ER status: positive; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 12; OS Event:alive; OS months: 12; Singe Sample Predictor Subtype: Luminal B; Treatment: AC; Overall Response: SD; pCR: no


title: 9819-020181B

description: Age: 42; ER status: positive; Node status: positive; Grade: 1; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 33; OS Event:alive; OS months: 33; Singe Sample Predictor Subtype: Luminal A; Treatment: AC_T; Overall Response: CR; pCR: no


title: 9819-030301B

description: Age: 69; ER status: negative; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 12; OS Event:alive; OS months: 12; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: CR; pCR: no


title: 9819-020342B

description: Age: 42; ER status: positive; Node status: positive; Grade: 2; Size: >2cm to <=5cm; RFS event: relapsed or DOD; RFS months: 15; OS Event:DOD or DOC; OS months: 18; Singe Sample Predictor Subtype: Luminal B; Treatment: T; Overall Response: PR; pCR: no


title: 9819-020472B

description: Age: 41; ER status: negative; Node status: positive; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 30; OS Event:alive; OS months: 30; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: CR; pCR: yes


title: 9819-020172B

description: Age: 54; ER status: negative; Node status: positive; Grade: ; Size: any size with direct extension to chest wall or skin; RFS event: no relapse; RFS months: 36; OS Event:alive; OS months: 36; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: PR; pCR: no


title: 9819-010358B

description: Age: 48; ER status: negative; Node status: positive; Grade: 1; Size: >5cm; RFS event: no relapse; RFS months: 43; OS Event:alive; OS months: 43; Singe Sample Predictor Subtype: Luminal B; Treatment: AC_TH; Overall Response: CR; pCR: no


title: 9819-030220-1

description: Singe Sample Predictor Subtype: HER2?; Treatment: AC_TH; Overall Response: PR; pCR: yes


title: 9819-040334

description: Age: 48; ER status: positive; Node status: positive; Grade: 3; Size: >5cm; RFS event: no relapse; RFS months: 11; OS Event:alive; OS months: 11; Singe Sample Predictor Subtype: Normal-like; Treatment: AC_T; Overall Response: pr; pCR: no


title: 9819-010481B

description: Age: 34; ER status: negative; Node status: positive; Grade: 3; Size: >5cm; RFS event: relapsed or DOD; RFS months: 21; OS Event:DOD or DOC; OS months: 27; Singe Sample Predictor Subtype: Basal-like; Treatment: ACZ_T; Overall Response: PD; pCR: no


title: 9819-040238

description: Age: 40; ER status: positive; Node status: positive; Grade: ; Size: any size with direct extension to chest wall or skin; RFS event: relapsed or DOD; RFS months: 15; OS Event:alive; OS months: 19; Singe Sample Predictor Subtype: Luminal B; Treatment: TC_T; Overall Response: PR; pCR: no


title: 9819-020349B

description: Age: 57; ER status: negative; Node status: negative; Grade: 2; Size: any size with direct extension to chest wall or skin; RFS event: no relapse; RFS months: 32; OS Event:alive; OS months: 32; Singe Sample Predictor Subtype: Luminal B; Treatment: AC_TH; Overall Response: PR; pCR: no


title: 9819-030307

description: Age: 42; ER status: negative; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 10; OS Event:alive; OS months: 10; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: CR; pCR: no


title: 9819-010372B

description: Age: 43; ER status: positive; Node status: positive; Grade: 3; Size: any size with direct extension to chest wall or skin; RFS event: no relapse; RFS months: 41; OS Event:alive; OS months: 41; Singe Sample Predictor Subtype: Luminal A; Treatment: AC_T; Overall Response: PR; pCR: no

tag: age

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: 9819-020135B

description: Age: 35; ER status: positive; Node status: positive; Grade: ; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 35; OS Event:alive; OS months: 35; Singe Sample Predictor Subtype: Luminal B; Treatment: AC_TH; Overall Response: CR; pCR: no


title: 9819-030054

description: Age: 58; ER status: negative; Node status: positive; Grade: 3; Size: any size with direct extension to chest wall or skin; RFS event: no relapse; RFS months: 24; OS Event:alive; OS months: 24; Singe Sample Predictor Subtype: Basal-like; Treatment: AC; Overall Response: PR; pCR: no


title: 9819-030341

description: Age: 55; ER status: positive; Node status: negative; Grade: 1; Size: any size with direct extension to chest wall or skin; RFS event: no relapse; RFS months: 16; OS Event:alive; OS months: 16; Singe Sample Predictor Subtype: LumA; Treatment: AC_T; Overall Response: PR; pCR: no


title: 9819-010319B

description: Age: 64; ER status: positive; Node status: positive; Grade: 3; Size: >5cm; RFS event: no relapse; RFS months: 46; OS Event:alive; OS months: 46; Singe Sample Predictor Subtype: Luminal B; Treatment: AC_T; Overall Response: SD; pCR: no


title: 9819-010514B

description: Age: 32; ER status: negative; Node status: positive; Grade: 3; Size: >5cm; RFS event: relapsed or DOD; RFS months: 7; OS Event:DOD or DOC; OS months: 11; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: PR; pCR: no


title: 9819-040079

description: Singe Sample Predictor Subtype: Luminal A;


title: 9819-020149B

description: Age: 55; ER status: positive; Node status: negative; Grade: 2; Size: any size with direct extension to chest wall or skin; RFS event: relapsed or DOD; RFS months: 25; OS Event:alive; OS months: 26; Singe Sample Predictor Subtype: Luminal B; Treatment: AC_TH; Overall Response: PR; pCR: no


title: 9819-020145B

description: Age: 46; ER status: negative; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 24; OS Event:alive; OS months: 24; Singe Sample Predictor Subtype: Basal-like; Treatment: AC; Overall Response: PR; pCR: no


title: 9819-020053B3

description: Age: 48; ER status: positive; Node status: negative; Grade: 2; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 38; OS Event:alive; OS months: 38; Singe Sample Predictor Subtype: Normal-like; Treatment: AC_TH; Overall Response: CR; pCR: no


title: 9819-030522

description: Age: 40; ER status: positive; Node status: negative; Grade: 1; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 22; OS Event:alive; OS months: 22; Singe Sample Predictor Subtype: Normal-like; Treatment: TACAC_T; Overall Response: PR; pCR: no


title: 9819-020115B2

description: Age: 41; ER status: positive; Node status: positive; Grade: 3; Size: >5cm; RFS event: relapsed or DOD; RFS months: 10; OS Event:DOD or DOC; OS months: 23; Singe Sample Predictor Subtype: Basal-like; Treatment: ACZ_T; Overall Response: SD; pCR: no


title: 9819-010432B(1)

description: Age: 65; ER status: negative; Node status: positive; Grade: 3; Size: any size with direct extension to chest wall or skin; RFS event: no relapse; RFS months: 48; OS Event:alive; OS months: 48; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: CR; pCR: yes


title: 9819-010262B

description: Age: 44; ER status: negative; Node status: positive; Grade: 3; Size: >5cm; RFS event: no relapse; RFS months: 46; OS Event:alive; OS months: 46; Singe Sample Predictor Subtype: Basal-like; Treatment: AC; Overall Response: CR; pCR: no


title: 050046-BC-Brain-Met

description: Singe Sample Predictor Subtype: Basal-like


title: 9819-000315B

description: Age: 30; ER status: negative; Node status: positive; Grade: 3; Size: >5cm; RFS event: no relapse; RFS months: 56; OS Event:alive; OS months: 56; Singe Sample Predictor Subtype: HER2?; Treatment: AC_TH; Overall Response: CR; pCR: yes


title: UB79-LumB

description: Agilent Custom Replicate Array of UB79 (GSM34514); Singe Sample Predictor Subtype: Luminal B


title: 9819-020542

description: Age: 42; ER status: negative; Node status: positive; Grade: 3; Size: >2cm to <=5cm; RFS event: relapsed or DOD; RFS months: 16; OS Event:DOD or DOC; OS months: 28; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: CR; pCR: no


title: 9819-000392B

description: Age: 79; ER status: negative; Node status: positive; Grade: 2; Size: >5cm; RFS event: no relapse; RFS months: 54; OS Event:alive; OS months: 54; Singe Sample Predictor Subtype: Basal-like; Treatment: AC; Overall Response: SD; pCR: no


title: PB419-Custom

description: Agilent Custom Replicate Array of PB419 (GSM34477); Singe Sample Predictor Subtype: Basal-like

tag: Breast Tumor that has been replicated on a custom designed microarray


title: 9819-010043B

description: Age: 45; ER status: positive; Node status: positive; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 52; OS Event:alive; OS months: 52; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: CR; pCR: yes

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs


title: 061705-Primary

tag: Breast Tumor


title: UB78-LumB

description: Agilent Custom Replicate Array of UB78 (GSM34512); Singe Sample Predictor Subtype: Luminal B


title: 010235B-Genomic-Core

description: Age: 36, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 49, Overall survival event: alive, Overall survival months: 49

tag: reference

tag: grade


title: 9819-000295B

description: Singe Sample Predictor Subtype: Basal-like; Treatment: AC_TH; Overall Response: SD; pCR: no


title: 9819-000406B

description: Age: 41; ER status: positive; Node status: positive; Grade: 1; Size: >5cm; RFS event: relapsed or DOD; RFS months: 22; OS Event:alive; OS months: 22; Singe Sample Predictor Subtype: Luminal B; Treatment: AC_TH; Overall Response: CR; pCR: no


title: 042105 Primary-Custom

source_name: 042105 Primary-Custom


title: 9819-010080B

description: Age: 41; ER status: negative; Node status: positive; Grade: 2; Size: >5cm; RFS event: no relapse; RFS months: 50; OS Event:alive; OS months: 50; Singe Sample Predictor Subtype: HER2?; Treatment: AC_T; Overall Response: CR; pCR: no


title: 9819-000129B

description: Age: 58; ER status: positive; Node status: negative; Grade: 2; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 65; OS Event:alive; OS months: 65; Singe Sample Predictor Subtype: Luminal A; Treatment: AC; Overall Response: CR; pCR: no

tag: age


title: 040554-BC-Brain-Met

description: Singe Sample Predictor Subtype: LumA

tag: Breast tumor metastasis to brain


title: PB138-Custom

description: Agilent Custom Replicate Array of PB138 (GSM34492); Singe Sample Predictor Subtype: Basal-like


title: PB412-Int-Custom

description: Agilent Custom Replicate Array of PB412-Int (GSM34507); Singe Sample Predictor Subtype: Basal-like


title: 010353B-Genomic-Core

description: Age: 60, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 12, Overall survival event: alive, Overall survival months: 12

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)


title: 010456B-Genomic-Core

description: Age: 60, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 38, Overall survival event: alive, Overall survival months: 48

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)


title: 9819-010134B

description: Age: 57; ER status: negative; Node status: negative; Grade: 3; Size: >2cm to <=5cm; RFS event: no relapse; RFS months: 53; OS Event:alive; OS months: 53; Singe Sample Predictor Subtype: Basal-like; Treatment: AC; Overall Response: PR; pCR: no


title: Normal-Breast-9-Custom

description: Agilent Custom Replicate Array of Normal-Breast-9 (GSM34440); Singe Sample Predictor Subtype: Normal-like

tag: subtype


title: Normal-Breast-4-Custom

description: Agilent Custom Replicate Array of Normal-Breast-4 (GSM34441); Singe Sample Predictor Subtype: Normal-like


title: PB407-LumB

description: Agilent Custom Replicate Array of PB407 (GSM52883); Singe Sample Predictor Subtype: Luminal B


title: 040490-BC-Brain-Met

description: Singe Sample Predictor Subtype: Basal-like


title: 9819-010142B

description: Age: 34; ER status: positive; Node status: negative; Grade: 3; Size: >5cm; RFS event: no relapse; RFS months: 49; OS Event:alive; OS months: 49; Singe Sample Predictor Subtype: LumA; Treatment: AC_TH; Overall Response: CR; pCR: yes

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months


title: PB126-Custom

description: Agilent Custom Replicate Array of PB126 (GSM34491); Singe Sample Predictor Subtype: Basal-like


title: BR01-0125-LumB

description: Agilent Custom Replicate Array of BR01-0125 (GSM34461); Singe Sample Predictor Subtype: Luminal B


title: 9819-000426B

description: Age: 52; ER status: negative; Node status: positive; Grade: 2; Size: any size with direct extension to chest wall or skin; RFS event: relapsed or DOD; RFS months: 21; OS Event:alive; OS months: 54; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: N/A; pCR: no


title: 9819-010249B

description: Age: 49; ER status: negative; Node status: positive; Grade: 3; Size: >5cm; RFS event: relapsed or DOD; RFS months: 6; OS Event:DOD or DOC; OS months: 13; Singe Sample Predictor Subtype: Normal-like; Treatment: AC_TH; Overall Response: SD; pCR: no


title: BR00-0284-Custom

description: Agilent Custom Replicate Array of BR00-0284 (GSM34425); Singe Sample Predictor Subtype: HER2?


title: BR95-0017-LumB

description: Agilent Custom Replicate Array of BR95-0017 (GSM34526); Singe Sample Predictor Subtype: Luminal B


title: BR00-0572-Custom

description: Agilent Custom Replicate Array of BR00-0572 (GSM34484); Singe Sample Predictor Subtype: Basal-like


title: MB80-LumB

description: Agilent Custom Replicate Array of MB80 (GSM50142); Singe Sample Predictor Subtype: Luminal B


title: A6-Liver-Met-LumB

description: Agilent Custom Replicate Array of A6-Liver-Met (GSM80223); Singe Sample Predictor Subtype: Luminal B

tag: Autopsy patient #6 metastasis from breast to Lung


title: A5-Skin-Lt-Met-Custom

description: Agilent Custom Replicate Array of A5-Skin-Left-Met (GSM34568); Singe Sample Predictor Subtype: Basal-like

tag: Autopsy patient #5 skin metastasis from breast foci B repeated on a custom designed microarray


title: PB339

description: Singe Sample Predictor Subtype: Luminal A


title: MB85-LumB

description: Agilent Custom Replicate Array of MB85 (GSM50145); Singe Sample Predictor Subtype: Luminal B

tag: Breast Tumor that has been replicated on a custom designed microarray


title: A4-LLL-Lung-Met-Custom

description: Agilent Custom replicate array of A4-LLL-Lung-Met (GSM34467); Singe Sample Predictor Subtype: HER2?

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: Autopsy patient #4 lung metastasis from breast foci A repeated on a custom designed microarray


title: BC00063_Repeat1

status: Public on Jul 30 2007

description: Exact Replicate of BC00063. Age: 36, ER status: negative, Node status: positive, grade: 3, Single Sample Predictor Subtype: HER+/ER-

tag: reference

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: BR94-1096

description: Age: 82, ER status: positive, Node status: negative, grade: 1, Size: 1 to 2cm, RFS event: relapsed or died of disease, RFS months: 31, Overall survival event: DOD or DOC, Overall survival months: 94, Single Sample Predictor Subtype: HER+/ER-

tag: age

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)

tag: grade


title: A6-Lung-Met

description: Age: 53, ER status: positive, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 1, Overall survival event: DOD or DOC, Overall survival months: 16, Single Sample Predictor Subtype: Normal Breast-like

source_name: RefB

source_name: Autopsy patient #6 lung metastasis from breast

tag: Autopsy patient lung metastases from breast


title: PB341-LN-Met

description: Age: 49, Node status: positive, RFS event: no relapse, RFS months: 18, Overall survival event: alive, Overall survival months: 18, Single Sample Predictor Subtype: Basal-like

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Breast Tumor, with paired metastasis sample

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)


title: BC00086

description: Age: 25, ER status: negative, Node status: positive, grade: 3, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9, Single Sample Predictor Subtype: Basal-like

source_name: Breast Tumor

tag: rfs months


title: BC00075

description: Age: 72, ER status: negative, Node status: positive, grade: 2, RFS event: relapsed or died of disease, RFS months: 11, Overall survival event: DOD or DOC, Overall survival months: 11, Single Sample Predictor Subtype: Normal Breast-like


title: PB155-MET-LN

description: Exact Replicate of PB155-LN-Met. Single Sample Predictor Subtype: Normal Breast-like

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Breast Tumor lymph node metastasis

tag: Breast tumor metastasis to lymph node


title: PB232

description: ER status: negative, Node status: negative, RFS event: no relapse, RFS months: 25, Overall survival event: alive, Overall survival months: 25, Single Sample Predictor Subtype: Basal-like

tag: reference


title: A1-10_Adrenal-Met

description: Single Sample Predictor Subtype: Basal-like

source_name: Autopsy patient #1 adrenal gland metastasis from breast


title: A8-Lung-Met

description: Single Sample Predictor Subtype: HER+/ER-

source_name: Autopsy patient #8 Lung metastasis from breast

tag: overall survival event (0=alive, 1=dod or doc)


title: A8-Caudaequina-Met

description: Age: 46, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 1, Overall survival event: DOD or DOC, Overall survival months: 44, Single Sample Predictor Subtype: HER+/ER-

source_name: Autopsy patient #8 Caudaequina metastasis from breast

tag: overall suvival months


title: A6-Liver-Met

description: Age: 53, ER status: positive, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 1, Overall survival event: DOD or DOC, Overall survival months: 16, Single Sample Predictor Subtype: LuminalB

source_name: Autopsy patient #6 metastasis from breast to Liver

tag: pam50 predictions plus claudin-low classification (cell line predictor)


title: PB196-C

description: Intrinsic pair:pair 16 on custom. Single Sample Predictor Subtype: Basal-like

tag: dscores unc337


title: BC00037

description: Age: 53, ER status: negative, Node status: positive, grade: 3, Single Sample Predictor Subtype: Normal Breast-like

tag: age


title: A7-LN-Met

source_name: Autopsy patient #7 Lymph Node metastasis from breast

tag: er  (1=positive; 0=negative)


title: 9830-020039B

description: Age: 37, ER status: positive, Node status: negative, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 32, Overall survival event: alive, Overall survival months: 32, Single Sample Predictor Subtype: Basal-like

tag: pgr  (1=positive; 0=negative)


title: BR94-187

description: Age: 47, ER status: positive, Node status: positive, grade: 2, RFS event: relapsed or died of disease, RFS months: 1, Overall survival event: DOD or DOC, Overall survival months: 23, Single Sample Predictor Subtype: Basal-like

tag: grade


title: BC00097

description: Age: 40, ER status: negative, Node status: positive, grade: 3, Single Sample Predictor Subtype: HER+/ER-


title: PB155-LN-Met

description: Age: 36, ER status: negative, Node status: positive, grade: 3, RFS event: no relapse, RFS months: 5, Overall survival event: alive, Overall survival months: 5, Single Sample Predictor Subtype: Basal-like


title: 010348B-Genomic-Core

description: Age: 37; ER status: positive; Node status: positive; Grade: 3; Size: >5cm; RFS event: relapsed or DOD; RFS months: 4; OS Event:DOD or DOC; OS months: 25; Singe Sample Predictor Subtype: Luminal B


title: PB479

description: Age: 52, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm


title: 9830-020018B

description: Age: 55, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 31, Overall survival event: alive, Overall survival months: 31


title: BC00094T

description: Age: 51, ER status: negative, Node status: negative, grade: 3, Single Sample Predictor Subtype: Basal-like


title: PB407

description: Age: 56, ER status: positive, Node status: positive, grade: 3, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 9, Overall survival event: alive, Overall survival months: 17, Single Sample Predictor Subtype: LuminalB


title: BC00074

description: Age: 78, ER status: negative, Node status: positive, grade: 2, Single Sample Predictor Subtype: Basal-like


title: BC00063

description: Age: 36, ER status: negative, Node status: positive, grade: 3, Single Sample Predictor Subtype: HER+/ER-


title: PB196-C-LN-Met

description: Intrinsic pair:pair 16 on custom of PB196-C. Single Sample Predictor Subtype: Basal-like

source_name: Breast Tumor lymph node metastasis, with paired primary tumor


title: BC00055

description: Age: 56, ER status: negative, Node status: positive, grade: 2, RFS event: relapsed or died of disease, RFS months: 12, Overall survival event: DOD or DOC, Overall survival months: 31, Single Sample Predictor Subtype: HER+/ER-


title: PB152-MET-LN

description: Age: 51, ER status: negative, Node status: positive or more nodes, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 31, Overall survival event: DOD or DOC, Overall survival months: 74


title: BC00048

description: Age: 77, ER status: negative, Node status: negative, grade: 2, RFS event: relapsed or died of disease, RFS months: 5, Overall survival event: DOD or DOC, Overall survival months: 11, Single Sample Predictor Subtype: Normal Breast-like


title: 030222-Spinal-Met

description: Age: 45, ER status: positive, Node status: positive, Single Sample Predictor Subtype: HER+/ER-

source_name: Breast tumor metastasis to spinal cord


title: BC00030-MET-post chemo

description: Age: 58, ER status: negative, Node status: positive, grade: 2, RFS event: relapsed or died of disease, RFS months: 8, Overall survival event: DOD or DOC, Overall survival months: 33, Single Sample Predictor Subtype: Basal-like

source_name: Breast Tumor Metastasis, chemotherapy treated


title: 9830-010214B

description: Age: 57, ER status: negative, Node status: negative, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 37, Overall survival event: alive, Overall survival months: 37, Single Sample Predictor Subtype: Basal-like


title: BC00083

description: Age: 43, ER status: negative, Node status: positive, grade: 3, RFS event: relapsed or died of disease, RFS months: 33, Overall survival event: alive, Overall survival months: 36, Single Sample Predictor Subtype: Basal-like


title: 030311-BC-Brain-Met

description: Age: 48, ER status: positive, Node status: negative, grade: 3, RFS event: relapsed or died of disease, RFS months: 28, Overall survival event: alive, Overall survival months: 51, Single Sample Predictor Subtype: LuminalB

source_name: Breast tumor metastasis to brain


title: 9830-000248B

description: Age: 37, ER status: positive, Node status: positive, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 48, Overall survival event: alive, Overall survival months: 48, Single Sample Predictor Subtype: HER+/ER-


title: 9830-010118B

description: Age: 47, ER status: negative, Node status: positive, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 41, Overall survival event: alive, Overall survival months: 41, Single Sample Predictor Subtype: Basal-like


title: 9830-000060B

status: Public on Jun 05 2007

description: Age: 79, ER status: positive, Node status: negative, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 53, Overall survival event: alive, Overall survival months: 53, Single Sample Predictor Subtype: LuminalA


title: PB244

description: Age: 38, ER status: negative, Node status: negative, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 24, Overall survival event: alive, Overall survival months: 24, Single Sample Predictor Subtype: Basal-like


title: 9830-010255B

description: Age: 49, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 35, Overall survival event: alive, Overall survival months: 35, Single Sample Predictor Subtype: HER+/ER-


title: 9830-010461B

description: Age: 59, ER status: positive, Node status: positive, grade: 1, Size: 2 to 5cm, RFS event: no relapse, RFS months: 32, Overall survival event: alive, Overall survival months: 32, Single Sample Predictor Subtype: LuminalA


title: 9830-020072B

description: Age: 75, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 23, Overall survival event: alive, Overall survival months: 23


title: A7-Brain-Met-v2

description: Age: 58, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 15, Overall survival event: DOD or DOC, Overall survival months: 25, Single Sample Predictor Subtype: Basal-like

source_name: Autopsy patient #7 Brain metastasis from breast


title: 9830-020185B

description: Age: 58, ER status: positive, Node status: positive, grade: 1, Size: larger than 5cm, RFS event: no relapse, RFS months: 26, Overall survival event: alive, Overall survival months: 26, Single Sample Predictor Subtype: LuminalA


title: PB284

description: Age: 34, ER status: positive, Node status: positive or more nodes, grade: 1, Size: 1 to 2cm, RFS event: no relapse, RFS months: 1, Overall survival event: alive, Overall survival months: 1


title: 9830-000094B

description: Age: 62, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 54, Overall survival event: alive, Overall survival months: 54


title: 9830-020310B

description: Age: 40, ER status: positive, Node status: negative, grade: 2, Size: larger than 5cm, RFS event: no relapse, RFS months: 24, Overall survival event: alive, Overall survival months: 24, Single Sample Predictor Subtype: LuminalB


title: 9830-010042B

description: Age: 77, ER status: negative, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 39, Overall survival event: alive, Overall survival months: 39


title: 9830-020340B

description: Age: 80, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 6, Overall survival event: DOD or DOC, Overall survival months: 6, Single Sample Predictor Subtype: LuminalB

source_name: Breast Tumor, tamoxifen-treated patient


title: 9830-010130B

description: Age: 39, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 44, Overall survival event: alive, Overall survival months: 44, Single Sample Predictor Subtype: Basal-like


title: 9830-020461B

description: Age: 75, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 23, Overall survival event: alive, Overall survival months: 23, Single Sample Predictor Subtype: LuminalA


title: 9830-020416B

description: Age: 75, ER status: positive, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 23, Overall survival event: alive, Overall survival months: 23, Single Sample Predictor Subtype: LuminalA


title: PB432

description: Age: 79, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 15, Overall survival event: alive, Overall survival months: 15


title: 9830-020025B

description: Age: 67, ER status: positive, Node status: negative, grade: 1, Size: 2 to 5cm, RFS event: no relapse, RFS months: 27, Overall survival event: alive, Overall survival months: 27, Single Sample Predictor Subtype: LuminalA


title: PB432-repeat1

description: Exact Replicate of PB432. Single Sample Predictor Subtype: LuminalB


title: 982085-BC-Brain-Met

description: Age: 61, ER status: negative, RFS event: relapsed or died of disease, RFS months: 1, Overall survival event: DOD or DOC, Overall survival months: 51, Single Sample Predictor Subtype: Basal-like


title: HCI02-235

description: Age: 57, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, Single Sample Predictor Subtype: Basal-like


title: UB55

description: Age: 58, ER status: positive, grade: 1, Size: 1 to 2cm, RFS event: no relapse, RFS months: 22, Overall survival event: alive, Overall survival months: 22


title: PB297

description: Age: 55, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 18, Overall survival event: alive, Overall survival months: 18


title: PB342

description: Age: 50, Node status: positive or more nodes, Size: 1 to 2cm, RFS event: no relapse, RFS months: 23, Overall survival event: alive, Overall survival months: 23


title: PB297-Int

description: Intrinsic pair:pair 18 of PB297. Single Sample Predictor Subtype: Basal-like


title: PB341

description: Age: 49, Node status: positive or more nodes, Size: 1 to 2cm, RFS event: no relapse, RFS months: 18, Overall survival event: alive, Overall survival months: 18


title: A5-Skin-Left-Met

description: Intrinsic pair:pair 6 of A5-Skin#1-Right-Met. Single Sample Predictor Subtype: Basal-like

source_name: Autopsy patient #5 skin metastasis from breast foci B


title: PB515

description: Age: 84, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 2, Overall survival event: alive, Overall survival months: 2


title: 9830-000517B

description: Age: 44, ER status: negative, Node status: negative, Size: 2 to 5cm, RFS event: no relapse, RFS months: 42, Overall survival event: alive, Overall survival months: 42, Single Sample Predictor Subtype: LuminalB


title: PB258-LN-Met

description: Intrinsic pair:pair 17 of PB258. Single Sample Predictor Subtype: LuminalA


title: BR98-0261

description: Age: 44, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 65, Overall survival event: alive, Overall survival months: 65, Single Sample Predictor Subtype: Basal-like


title: BC00024T

description: Age: 68, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: relapsed at any site or died of disease, RFS months: 3, Overall survival event: DOD or DOC, Overall survival months: 3


title: BC00043

description: Age: 43, ER status: negative, Node status: negative, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 76, Overall survival event: alive, Overall survival months: 76, Single Sample Predictor Subtype: Basal-like


title: BC00010

description: Age: 47, ER status: negative, Node status: positive, grade: 2, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 16, Overall survival event: DOD or DOC, Overall survival months: 16, Single Sample Predictor Subtype: HER2+/ER-


title: PB184

description: Age: 50, ER status: positive, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 29, Overall survival event: alive, Overall survival months: 29


title: UB38

description: Age: 50, ER status: positive, Node status: positive or more nodes, grade: 1, Size: 1 to 2cm, RFS event: no relapse, RFS months: 20, Overall survival event: alive, Overall survival months: 20


title: UB61

description: Age: 51, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 19, Overall survival event: alive, Overall survival months: 19


title: BR00-0365

description: Age: 43, ER status: positive, Node status: positive, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: no relapse, RFS months: 22, Overall survival event: alive, Overall survival months: 22, Single Sample Predictor Subtype: LuminalB


title: PB441

description: Age: 83, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9


title: UB21

description: Age: 77, ER status: positive, grade: 1, Size: 1 to 2cm, RFS event: no relapse, RFS months: 30, Overall survival event: alive, Overall survival months: 30


title: UB43

description: Age: 48, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 19, Overall survival event: alive, Overall survival months: 19


title: BR95-0017

description: Age: 52, ER status: positive, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 36, Overall survival event: DOD or DOC, Overall survival months: 64, Single Sample Predictor Subtype: LuminalB


title: UB66

description: Age: 88, ER status: positive, Node status: positive or more nodes, grade: 1, Size: 2 to 5cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9


title: BR95-0152

description: Age: 72, ER status: positive, Node status: negative, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed or died of disease, RFS months: 26, Overall survival event: alive, Overall survival months: 101, Single Sample Predictor Subtype: HER2+/ER-


title: UB39

description: Age: 48, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 25, Overall survival event: alive, Overall survival months: 25


title: BR99-0207

description: Intrinsic pair:pair 12. Age: 84, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 57, Overall survival event: alive, Overall survival months: 57, Single Sample Predictor Subtype: LuminalA


title: UB45

description: Age: 46, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 21, Overall survival event: alive, Overall survival months: 21


title: BC00051

description: Age: 51, ER status: negative, Node status: negative, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 68, Overall survival event: alive, Overall survival months: 68, Single Sample Predictor Subtype: HER2+/ER-


title: UB60

description: Age: 72, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 20, Overall survival event: alive, Overall survival months: 20


title: PB455

description: Age: 52, ER status: negative, Node status: positive or more nodes, grade: 2, Size: larger than 5cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9


title: 9830-010384B

description: Age: 34, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 32, Overall survival event: alive, Overall survival months: 32, Single Sample Predictor Subtype: Basal-like


title: BC00052-post-chemo

description: Intrinsic pair:pair 7. Age: 47, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 14, Overall survival event: DOD or DOC, Overall survival months: 18, Single Sample Predictor Subtype: HER2+/ER-

source_name: Breast Tumor, chemotherapy treated


title: PB334

description: Age: 50, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 19, Overall survival event: alive, Overall survival months: 19

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs


title: PB149

description: Age: 41, ER status: positive, Node status: negative, grade: 1, Size: 2 to 5cm, RFS event: no relapse, RFS months: 34, Overall survival event: alive, Overall survival months: 34, Single Sample Predictor Subtype: Normal Breast-like


title: PB205

description: Age: 39, ER status: negative, Node status: positive or more nodes, grade: 2, Size: Any size with direct extension to chest wall or skin, RFS event: no relapse, RFS months: 5, Overall survival event: alive, Overall survival months: 5


title: UB56

description: Age: 63, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9


title: BR98-0261-Repeat1

description: Exact Replicate of BR98-0261. Single Sample Predictor Subtype: Basal-like


title: Normal-Breast-2

description: Intrinsic pair:pair 25. Single Sample Predictor Subtype: Normal Breast-like

source_name: Normal breast tissue from an individual

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)


title: BC00036-Repeat1

description: Exact Replicate of BC00034. Single Sample Predictor Subtype: HER2+/ER-

source_name: Breast Tumor

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)


title: PB258

description: Intrinsic pair:pair 17. Age: 84, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, Single Sample Predictor Subtype: LuminalA

source_name: Breast Tumor, with paired metastasis sample

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)


title: BC00049T

description: Age: 43, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 48, Overall survival event: alive, Overall survival months: 72, Single Sample Predictor Subtype: Basal-like

tag: rfs months


title: BR00-0387

description: Age: 57, ER status: positive, Node status: positive or more nodes, grade: 2, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed at any site or died of disease, RFS months: 6, Overall survival event: alive, Overall survival months: 51


title: BC00070-Int

description: Intrinsic pair:pair 8 of BC00070. Single Sample Predictor Subtype: Basal-like


title: BC00078T

description: Age: 68, ER status: negative, Node status: positive, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 12, Overall survival event: DOD or DOC, Overall survival months: 12, Single Sample Predictor Subtype: Basal-like


title: PB376

description: Age: 50, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 15, Overall survival event: alive, Overall survival months: 15


title: UB78-LN-Met

description: Intrinsic pair:pair 23 of UB78. Single Sample Predictor Subtype: LuminalB


title: 020577-BC-Brain-Met(=73)

description: Intrinsic pair:pair 1 of 020573-BC-Primary. Single Sample Predictor Subtype: HER2+/ER-

source_name: Breast tumor metastasis to the brain associated with a primary tumor, which is 020573-BC-Primary


title: BC00070

description: Intrinsic pair:pair 8. Age: 38, ER status: negative, Node status: negative, grade: 2, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 22, Overall survival event: DOD or DOC, Overall survival months: 25, Single Sample Predictor Subtype: Basal-like


title: BR00-0344-Repeat1

description: Exact Replicate of BR00-0344. Single Sample Predictor Subtype: LuminalB


title: BC00071

description: Age: 33, ER status: negative, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 16, Overall survival event: DOD or DOC, Overall survival months: 47, Single Sample Predictor Subtype: HER2+/ER-


title: BC00082T

description: Age: 84, ER status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 27, Overall survival event: DOD or DOC, Overall survival months: 27


title: BC00043T

description: Age: 43, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 76, Overall survival event: alive, Overall survival months: 76, Single Sample Predictor Subtype: Basal-like


title: BR98-0161

description: Age: 57, ER status: negative, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 36, Overall survival event: DOD or DOC, Overall survival months: 60, Single Sample Predictor Subtype: LuminalB


title: BC00041

description: Age: 46, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 13, Overall survival event: DOD or DOC, Overall survival months: 29, Single Sample Predictor Subtype: Basal-like


title: UB78

description: Intrinsic pair:pair 23. , ER status: positive, Node status: positive, Single Sample Predictor Subtype: LuminalB


title: PB413

description: Age: 63, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9


title: PB412-Int

description: Intrinsic pair:pair 19 of PB412. Single Sample Predictor Subtype: Basal-like


title: PB412

description: Intrinsic pair:pair 19. Age: 58, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, Single Sample Predictor Subtype: Basal-like


title: BR00-0344

description: Age: 65, ER status: positive, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 7, Overall survival event: DOD or DOC, Overall survival months: 30, Single Sample Predictor Subtype: LuminalB


title: UB57

description: Age: 60, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 17, Overall survival event: alive, Overall survival months: 17


title: BC00064-RECUR

description: Age: 44, ER status: negative, grade: 3, Size: 1 to 2cm, RFS event: relapsed at any site or died of disease, RFS months: 10, Overall survival event: DOD or DOC, Overall survival months: 47

source_name: Breast Tumor recurrence


title: 030432-BC-Brain-Met

description: Intrinsic pair:pair 2. Single Sample Predictor Subtype: LuminalB


title: BC00010-Repeat1

description: Exact Replicate of BC00010. Single Sample Predictor Subtype: HER2+/ER-


title: PB126

description: Intrinsic pair:pair 14. Age: 29, ER status: negative, Node status: positive, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed or died of disease, RFS months: 1, Overall survival event: DOD or DOC, Overall survival months: 16, Single Sample Predictor Subtype: Basal-like


title: BR01-0246

description: Age: 36, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 31, Overall survival event: alive, Overall survival months: 31, Single Sample Predictor Subtype: LuminalA


title: PB388

description: Age: 80, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 16, Overall survival event: alive, Overall survival months: 16, Single Sample Predictor Subtype: LuminalA


title: BC00014

description: Age: 69, ER status: negative, Node status: positive, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed or died of disease, RFS months: 18, Overall survival event: DOD or DOC, Overall survival months: 23, Single Sample Predictor Subtype: LuminalA


title: 030064-BC-Brain-Met

description: Age: 32, ER status: positive, Node status: positive, grade: 2, Size: 1 to 2cm, RFS event: relapsed or died of disease, RFS months: 51, Overall survival event: alive, Overall survival months: 64, Single Sample Predictor Subtype: HER2+/ER-


title: BR97-0137-Int

description: Intrinsic pair:pair 11 of BR97-0137. Single Sample Predictor Subtype: Basal-like


title: PB377

description: Age: 77, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 18, Overall survival event: alive, Overall survival months: 18, Single Sample Predictor Subtype: Basal-like


title: BR01-0349

description: Age: 37, ER status: positive, Node status: positive, grade: 3, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 3, Overall survival event: DOD or DOC, Overall survival months: 24, Single Sample Predictor Subtype: LuminalB


title: BC00057-post-chemo

description: Age: 51, ER status: negative, Node status: positive, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed or died of disease, RFS months: 8, Overall survival event: DOD or DOC, Overall survival months: 12, Single Sample Predictor Subtype: HER2+/ER-