title: UB67-Repeat1

description: Exact Replicate of UB67. Age: 80, ER status: negative, Node status: positive, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 16, Overall survival event: alive, Overall survival months: 16, Single Sample Predictor Subtype: Basal-like


title: PB314

status: Public on Jun 05 2007

type: RNA

city: Chapel Hill

first: Charles

middle: M.

last: Perou

state: NC

address: 12-044 Lineberger Comprehensive Cancer Center CB# 7295

department: Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center

country: USA

institute: University of North Carolina at Chapel Hill

description: Age: 51, ER status: negative, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 21, Overall survival event: alive, Overall survival months: 21

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

scan_protocol: Fluorescent array images were collected for both Cy3 and Cy5 with a GenePix 4000B fluorescent scanner and image intensity data were extracted and analyzed with GenePix Pro 4.1 analysis software.

data_processing: Data for both channels were Lowess-normalized and then log(2) ratio was taken

molecule: total RNA

organism: Homo sapiens

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

extract_protocol: Total RNA isolated by Stratagene.

tag: reference

source_name: Breast Tumor

extract_protocol: Qiagen Rneasy Kit

tag: age

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: grade

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

tag: dscores unc337


title: PB311

description: Age: 48, ER status: positive, Node status: positive or more nodes, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 14, Overall survival event: alive, Overall survival months: 14

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs


title: PB138

description: Intrinsic pair:pair 15. Age: 58, ER status: negative, Node status: negative, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 30, Overall survival event: alive, Overall survival months: 30, Single Sample Predictor Subtype: Basal-like

value: Basal


title: BC00014-Repeat1

description: Exact Replicate of BC00014. Single Sample Predictor Subtype: HER2+/ER-

value: LumA


title: 030432-BC-Brain-Met-Int

description: Intrinsic pair:pair 2 of 030432-BC-Brain-Met. Single Sample Predictor Subtype: LuminalB

source_name: Breast tumor metastasis to brain

value: LumB


title: BC00036T

description: Age: 55, ER status: negative, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 10, Overall survival event: alive, Overall survival months: 10


title: Normal-Breast-1

description: Single Sample Predictor Subtype: Normal Breast-like

source_name: Normal breast tissue from BD, pool of samples

value: Normal


title: BR00-0572-Int

description: Intrinsic pair:pair 10 of BR00-0572. Single Sample Predictor Subtype: Basal-like


title: Normal-Breast-7

description: Intrinsic pair:pair 25. Single Sample Predictor Subtype: Normal Breast-like

source_name: Normal breast tissue from an individual

tag: er (1=positive; 0=negative)

tag: pgr (1=positive; 0=negative)


title: BR00-0572

description: Intrinsic pair:pair 10. Age: 45, ER status: negative, Node status: positive, grade: 3, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 11, Overall survival event: alive, Overall survival months: 42, Single Sample Predictor Subtype: Basal-like


title: BC00029T

description: Age: 44, ER status: negative, Node status: positive, grade: 3, RFS event: no relapse, RFS months: 62, Overall survival event: alive, Overall survival months: 62, Single Sample Predictor Subtype: Basal-like


title: BR95-0035

description: Age: 74, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 106, Overall survival event: alive, Overall survival months: 106, Single Sample Predictor Subtype: LuminalA


title: Normal-Breast-3


title: PB419

description: Intrinsic pair:pair 20. Single Sample Predictor Subtype: Basal-like


title: PB307

description: Age: 35, ER status: positive, Node status: negative, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9, Single Sample Predictor Subtype: LuminalB


title: BC00034

description: Age: 68, ER status: negative, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 81, Overall survival event: alive, Overall survival months: 81


title: BR00-0284-Int

description: Intrinsic pair:pair 9 of BR00-0284. Single Sample Predictor Subtype: HER2+/ER-


title: BC00004

description: Age: 67, ER status: negative, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 118, Overall survival event: alive, Overall survival months: 118


title: 030521-BC-Brain-Met-Int

description: Intrinsic pair:pair 3 of 030521-BC-Brain-Met. Single Sample Predictor Subtype: HER2+/ER-


title: PB158

description: Age: 86, ER status: positive, Node status: negative, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 30, Overall survival event: alive, Overall survival months: 30, Single Sample Predictor Subtype: LuminalB


title: PB419-Int

description: Intrinsic pair:pair 20 of PB419. Age: 49, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 10, Overall survival event: alive, Overall survival months: 10, Single Sample Predictor Subtype: Basal-like


title: BR01-0125

description: Age: 40, ER status: positive, Node status: positive, grade: 2, Size: larger than 5cm, RFS event: no relapse, RFS months: 33, Overall survival event: alive, Overall survival months: 33, Single Sample Predictor Subtype: LuminalB


title: PB249

description: Age: 36, ER status: positive, Node status: positive, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 8, Overall survival event: alive, Overall survival months: 8, Single Sample Predictor Subtype: LuminalB


title: A1-17-Left-Primary

description: Intrinsic pair:pair 4 of A1-01-Right-Lung. Age: 64, ER status: negative, Node status: positive, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed or died of disease, RFS months: 2, Overall survival event: DOD or DOC, Overall survival months: 2, Single Sample Predictor Subtype: Basal-like

source_name: Autopsy patient #1 breast primary tumor


title: PB120-LN-Met

description: Age: 61, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 1, Overall survival event: DOD or DOC, Overall survival months: 13

source_name: Breast Tumor lymph node metastasis


title: BR96-0014

description: Age: 47, ER status: positive, Node status: positive, grade: 1, Size: Any size with direct extension to chest wall or skin, RFS event: no relapse, RFS months: 96, Overall survival event: alive, Overall survival months: 96, Single Sample Predictor Subtype: LuminalA


title: BC00052-post-chemo-Int

description: Intrinsic pair:pair 7 of BC00052-post-chemo. Single Sample Predictor Subtype: HER2+/ER-

source_name: Breast Tumor, chemotherapy treated


title: A5-Skin#1-Right-Met

description: Intrinsic pair:pair 6. Age: 65, ER status: negative, Node status: positive, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed or died of disease, RFS months: 26, Overall survival event: DOD or DOC, Overall survival months: 26, Single Sample Predictor Subtype: Basal-like

source_name: Autopsy patient #5 skin metastasis from breast foci A


title: PB255

description: Age: 56, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 4, Overall survival event: alive, Overall survival months: 4


title: BR99-0348

description: Age: 85, ER status: positive, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 32, Overall survival event: alive, Overall survival months: 32


title: BR99-0348-Int

description: Intrinsic pair:pair 13 of BR99-0348. Single Sample Predictor Subtype: LuminalA


title: Normal-Breast-5

description: Single Sample Predictor Subtype: Normal Breast-like


title: BR99-0207-Int

description: Intrinsic pair:pair 12 of BR99-0207. Single Sample Predictor Subtype: LuminalA


title: PB126-LN-Met

description: Intrinsic pair:pair 14 of PB126. Single Sample Predictor Subtype: Basal-like

source_name: Breast Tumor lymph node metastasis, with paired primary tumor


title: A4-LUL-Lung-Met

description: Intrinsic pair:pair 5 of A4-LLL-Lung-Met. Single Sample Predictor Subtype: Basal-like

source_name: Autopsy patient #4 lung metastasis from breast foci B


title: BR95-0184

description: Age: 74, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 96, Overall survival event: alive, Overall survival months: 96, Single Sample Predictor Subtype: LuminalB


title: UB69

description: Age: 40, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 13, Overall survival event: alive, Overall survival months: 13


title: Normal-Breast-4

description: Intrinsic pair:pair 26 of Normal-Breast-3. Single Sample Predictor Subtype: Normal Breast-like


title: 030521-BC-Brain-Met

description: Intrinsic pair:pair 3. Single Sample Predictor Subtype: HER2+/ER-


title: UB71

description: Age: 60, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 7, Overall survival event: alive, Overall survival months: 7


title: Normal-Breast-8


title: A4-LLL-Lung-Met

description: Intrinsic pair:pair 5. Age: 44, ER status: positive, Node status: positive, grade: 3, Size: Any size with direct extension to chest wall or skin, RFS event: relapsed or died of disease, RFS months: 22, Overall survival event: DOD or DOC, Overall survival months: 22, Single Sample Predictor Subtype: Basal-like

source_name: Autopsy patient #4 lung metastasis from breast foci A


title: Normal-Breast-9

description: Intrinsic pair:pair 26 of Normal-Breast-8. Single Sample Predictor Subtype: Normal Breast-like

source_name: Normal breast tissue from Strategene, pool of samples


title: UB61-Int

description: Intrinsic pair:pair 22 of UB61. Single Sample Predictor Subtype: LuminalA


title: UB67

description: Age: 80, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 16, Overall survival event: alive, Overall survival months: 16

value: Claudin


title: BC00004-Repeat1

description: Exact Replicate of BC00004. Single Sample Predictor Subtype: LuminalA


title: PB370

description: Age: 67, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 20, Overall survival event: alive, Overall survival months: 20


title: PB379

description: Age: 55, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: relapsed at any site or died of disease, RFS months: 15, Overall survival event: alive, Overall survival months: 17


title: BR00-0387-Repeat1

description: Exact Replicate of BR00-0387. Single Sample Predictor Subtype: LuminalA


title: UB29

description: Age: 59, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 25, Overall survival event: alive, Overall survival months: 25


title: PB293

description: Age: 56, ER status: positive, Node status: negative, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 11, Overall survival event: alive, Overall survival months: 11, Single Sample Predictor Subtype: LuminalB


title: BC00053

description: Age: 71, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 27, Overall survival event: DOD or DOC, Overall survival months: 28, Single Sample Predictor Subtype: Normal Breast-like


title: UB55-Int

description: Intrinsic pair:pair 21 of UB55. Single Sample Predictor Subtype: LuminalA


title: PB475

description: Age: 50, ER status: positive, Node status: negative, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 2, Overall survival event: alive, Overall survival months: 2, Single Sample Predictor Subtype: LuminalA


title: PB271

description: Age: 45, ER status: positive, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 14, Overall survival event: alive, Overall survival months: 14, Single Sample Predictor Subtype: Normal Breast-like


title: BR97-1045

description: Age: 44, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 31, Overall survival event: alive, Overall survival months: 31, Single Sample Predictor Subtype: LuminalA


title: 020573-BC-Primary

description: Intrinsic pair:pair 1. Age: 41, ER status: positive, Node status: positive, grade: 3, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 10, Overall survival event: alive, Overall survival months: 22, Single Sample Predictor Subtype: HER2+/ER-

source_name: Breast primary tumor from a patient with an associated brain metastases, which is 020577-BC-Brain-Met(=73)


title: BR00-0587

description: Age: 68, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 37, Overall survival event: alive, Overall survival months: 37


title: BR00-0284

description: Intrinsic pair:pair 9. Age: 63, ER status: negative, Node status: negative, grade: 3, Size: larger than 5cm, RFS event: no relapse, RFS months: 43, Overall survival event: alive, Overall survival months: 43, Single Sample Predictor Subtype: HER2+/ER-


title: Normal-Breast-6

description: Single Sample Predictor Subtype: Normal Breast-like


title: UB44

description: Age: 50, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 24, Overall survival event: alive, Overall survival months: 24


title: UB37

description: Age: 42, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 25, Overall survival event: alive, Overall survival months: 25


title: BR97-0137

description: Intrinsic pair:pair 11. Age: 55, ER status: negative, Node status: positive, grade: 3, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 20, Overall survival event: DOD or DOC, Overall survival months: 21, Single Sample Predictor Subtype: Basal-like


title: BR94-1083

description: Age: 48, ER status: negative, Node status: positive, grade: 3, Size: 1 to 2cm, RFS event: relapsed or died of disease, RFS months: 23, Overall survival event: DOD or DOC, Overall survival months: 47, Single Sample Predictor Subtype: LuminalA


title: PB_p53null_4304R

status: Public on May 01 2007

organism: Mus musculus

source_name: Mouse reference

tag: Whole mouse total RNA

tag: mammary tumor


title: PB138-Int

description: Intrinsic pair:pair 15 of PB138. Single Sample Predictor Subtype: Basal-like

tag: reference

tag: age


title: PB_p53null_1634R


title: BALB_p53het_IR_C1301_4_KOLLER


title: BR00-0504

description: Age: 88, ER status: positive, Node status: positive, grade: 1, Size: 2 to 5cm, RFS event: no relapse, RFS months: 39, Overall survival event: alive, Overall survival months: 39, Single Sample Predictor Subtype: LuminalA

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)


title: BDF1_WAP_T121_KS150_SIMIN


title: FVB_MMTV_Wnt1_CA04_683A_CHURCHILL


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_113a_FURTH


title: C57BL_6J_Wap_Tag_CA_226B_CHURCHILL


title: FVB_MMTV_Neu_69331_USARY


title: PB_p53null_2657R


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_100a_FURTH


title: PB_p53null_3941R


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_96b_FURTH


title: C57BL_6J_Wap_Tag_CA_226A_CHURCHILL


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_172d_FURTH


title: PB_p53null_3939R


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_129_FURTH


title: BALB_BRCA1het_p53het_IR_C0912_12_KOLLER


title: BALB_p53het_IR_C0323_4_KOLLER


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_88c1_FURTH


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_88a2_FURTH


title: C57BL_6J_Wap_Tag_CA_215A_CHURCHILL


title: BALB_p53het_IR_C1301_1_KOLLER


title: C57BL_6J_Wap_Tag_CA_213A_CHURCHILL


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_145a2_FURTH


title: BALB_BRCA1het_p53het_IR_C0917_4_KOLLER


title: C57BL_6J_Wap_Tag_CA_224A_CHURCHILL


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_108b_FURTH


title: C57Bl6_MMTV_Cre_BRCA1CoCo_p53het_106c1_FURTH


title: BALB_BRCA1het_p53het_IR_C0912_13_KOLLER


title: FVB_MMTV_Neu_CA05_875A_CHURCHILL


title: FVB_MMTV_Neu_CA05_861A_CHURCHILL


title: FVB_Wap_Myc_CA05_869A_CHURCHILL


title: FVB_Wap_Myc_CA05_867A_CHURCHILL


title: FVB_MMTV_PYVT_430_Usary


title: FVB_MMTV_PYVT_575_Usary


title: FVB_Wap_Myc_CA02_567C_CHURCHILL


title: FVB_Wap_Int3_CA02_575A_CHURCHILL


title: FVB_Wap_Int3_CA01_433A_dup2_CHURCHILL


title: FVB_Wap_Myc_CA02_540A_CHURCHILL


title: FVB_Wap_Myc_CA02_550A_spindloid_CHURCHILL


title: FVB_Wap_Myc_CA02_544A_dup_CHURCHILL


title: FVB_Wap_Int3_CA01_433A_dup_CHURCHILL


title: FVB_Wap_Int3_CA02_566A_CHURCHILL


title: FVB_Wap_Int3_CA02_437A_CHURCHILL


title: FVB_Wap_Int3_CA01_433A_CHURCHILL


title: FVB_Wap_Myc_CA02_579F_CHURCHILL


title: FVB_Wap_Myc_CA02_540B_spindloid_dup_CHURCHILL


title: FVB_Wap_Myc_CA02_579C_CHURCHILL


title: FVB_MMTV_Wnt1_CA04_676A_CHURCHILL


title: FVB_Wap_Myc_CA02_548A_CHURCHILL


title: FVB_NJ_NORMAL_MAMMARYGLAND_CA04_678A

tag: mammary gland


title: FVB_Wap_Int3_CA01_434B_CHURCHILL_repeat


title: FVB_Wap_Myc_CA02_549A_CHURCHILL


title: FVB_Wap_Myc_CA02_545A_CHURCHILL


title: FVB_Wap_Int3_CA01_434A_CHURCHILL


title: FVB_NJ_NORMAL_MAMMARYGLAND_CA04_679A


title: FVB_Wap_Myc_CA02_569A_CHURCHILL


title: FVB_Wap_Int3_CA01_426A_CHURCHILL_repeat


title: FVB_NJ_NORMAL_MAMMARYGLAND_CA02_489A


title: FVB_NJ_NORMAL_MAMMARYGLAND_CA02_450A


title: FVB_NJ_NORMAL_MAMMARYGLAND_CA04_677A


title: FVB_MMTV_Wnt1_CA02_570B_CHURCHILL


title: FVB_MMTV_Wnt1_CA03_587A_CHURCHILL


title: FVB_MMTV_Wnt1_CA03_634A_CHURCHILL


title: FVB_MMTV_Wnt1_CA02_478A_CHURCHILL


title: FVB_MMTV_PYVT_'91_SIMIN


title: FVB_MMTV_Neu_CA01_416A_CHURCHILL


title: FVB_MMTV_Neu_CA01_431A_CHURCHILL


title: FVB_MMTV_Neu_CA01_416C_repeat_CHURCHILL


title: FVB_MMTV_Wnt1_CA02_467A_CHURCHILL


title: FVB_MMTV_PYVT_'91#3_SIMIN


title: FVB_MMTV_PYVT_'31_SIMIN


title: FVB_MMTV_Wnt1_CA02_506A_CHURCHILL


title: FVB_MMTV_Wnt1_CA02_570A_CHURCHILL


title: FVB_MMTV_Neu_CA01_432A_CHURCHILL


title: FVB_MMTV_PYVT_'91#2_SIMIN


title: FVB_MMTV_PYVT_'89_SIMIN


title: FVB_DMBA_8_Squa_GLAZER


title: FVB_MMTV_Wnt1_CA02_486A_CHURCHILL


title: FVB_MMTV_Wnt1_CA02_493A_CHURCHILL


title: FVB_MMTV_Neu_#404_GREEN


title: FVB_DMBA_9_Squa_GLAZER


title: FVB_DMBA_9_Squa_GLAZER_repeat


title: FVB_DMBA_4_Adeno_GLAZER


title: FVB_MMTV_Neu_7-6-99_GREEN


title: FVB_DMBA_2_Adeno_GLAZER


title: FVB_MMTV_Neu_8-2-99_GREEN


title: FVB_DMBA_5_Squa_GLAZER


title: FVB_DMBA_13_Spindle_GLAZER


title: FVB_DMBA_6_Squa_GLAZER


title: FVB_DMBA_12_Spindle_GLAZER


title: FVB_Wap_Myc_CA02_540B_spindloid_CHURCHILL


title: FVB_DMBA_3_Adeno_GLAZER_repeat


title: FVB_C3(1)_Tag_E29_1A_614_BROWN


title: BDF1_TgWAPT121p53het_KS581_Solid


title: FVB_C3(1)_Tag_E29_5A_645_BROWN


title: FVB_C3(1)_Tag_#86_GREEN


title: BALB_TgWAPT121_KS556


title: BALB_BRCA1het_p53het_IR_B9964_6_KOLLER


title: BDF1_TgWAPT121_KS580_Spindle&Angiogenesis


title: BALB_p53het_IR_A1446_1_KOLLER_repeat


title: FVB_DMBA_11_Spindle_GLAZER


title: BDF1_TgWAPT121_KS644_Solid+Gland


title: FVB_C3(1)_Tag_#72_GREEN


title: BALB_p53het_IR_A2989_7_KOLLER


title: BALB_BRCA1het_p53het_IR_C0379_5_KOLLER


title: FVB_C3(1)_Tag_E29_2A_632_BROWN


title: BALB_p53het_IR_A5824_7_KOLLER


title: BALB_TgWAPT121_KS555


title: BALB_BRCA1het_p53het_IR_B1129_4_KOLLER


title: BALB_p53het_IR_10915_7_KOLLER


title: BALB_BRCA1het_p53het_IR_B9965_1_KOLLER


title: FVB_C3(1)_Tag_#84_GREEN


title: BDF1_TgWapT121_KS643_Solid


title: FVB_C3(1)_Tag_#74_GREEN


title: BALBc_NORMAL_MAMMARYGLAND_100993_SIMIN


title: BALBc_NORMAL_MAMMARYGLAND_100991_SIMIN


title: FVB_C3(1)_Tag_#76_GREEN


title: FVB_DMBA_1_Adeno_GLAZER_repeat


title: BALBc_NORMAL_MAMMARYGLAND_100992_SIMIN


title: BALBc_NORMAL_MAMMARYGLAND_100990_SIMIN


title: BALBc_NORMAL_MAMMARYGLAND_100989_SIMIN


title: BC00072

description: Age: 48, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 46, Overall survival event: alive, Overall survival months: 70, Single Sample Predictor Subtype: LuminalA

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: grade


title: BC00011

description: Age: 71, ER status: positive, Node status: positive, Size: 2 to 5cm, RFS event: no relapse, RFS months: 105, Overall survival event: alive, Overall survival months: 105, Single Sample Predictor Subtype: LuminalB

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months


title: 9830-030446B

description: Age: 55, ER status: positive, Node status: negative, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 12, Overall survival event: alive, Overall survival months: 12, Single Sample Predictor Subtype: LuminalA

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)


title: BC00054

description: Age: 70, ER status: negative, Node status: negative, grade: 2, Size: 1 to 2cm, RFS months: 83, Overall survival months: 83, Single Sample Predictor Subtype: Normal Breast-like

tag: dscores unc337


title: BC00035

description: Single Sample Predictor Subtype: LuminalA


title: BR-02-7035

description: Age: 73, ER status: negative, Node status: negative, grade: 3, Size: 1 to 2cm, Single Sample Predictor Subtype: Basal-like


title: BC00016-T

description: Age: 64, ER status: positive, Node status: positive, Size: 1 to 2cm, RFS event: relapsed or died of disease, RFS months: 17, Overall survival event: DOD or DOC, Overall survival months: 56, Single Sample Predictor Subtype: LuminalA


title: 9830-000030B

description: Age: 64, ER status: positive, Node status: positive, grade: 1, Size: 2 to 5cm, RFS event: no relapse, RFS months: 56, Overall survival event: alive, Overall survival months: 56, Single Sample Predictor Subtype: LuminalA


title: PB326-LN-Met

description: Age: 54, Node status: positive, Single Sample Predictor Subtype: LuminalB


title: 9830-030597B

description: Age: 56, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9, Single Sample Predictor Subtype: Normal Breast-like


title: BR-03-7268

description: Age: 37, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, Single Sample Predictor Subtype: LuminalA


title: BC00033-T

description: Age: 67, ER status: positive, Node status: positive, grade: 3, Size: 1 to 2cm, RFS event: relapsed or died of disease, RFS months: 21, Overall survival event: DOD or DOC, Overall survival months: 46, Single Sample Predictor Subtype: Basal-like


title: BR-02-7043

description: Age: 67, ER status: positive, Node status: negative, grade: 3, Size: 1 to 2cm, Single Sample Predictor Subtype: LuminalB


title: BR-02-7054

description: Age: 55, Node status: negative, grade: 1, Size: 1 to 2cm, Single Sample Predictor Subtype: LuminalA


title: BR-02-7050

description: Age: 54, ER status: positive, Node status: positive, grade: 2, Size: 1 to 2cm, Single Sample Predictor Subtype: LuminalA


title: PB267_Repeat1

description: Exact Replicate of PB232. Single Sample Predictor Subtype: Basal-like


title: BR-02-7048

description: Age: 36, Node status: positive, Size: 1 to 2cm, Single Sample Predictor Subtype: LuminalA


title: BC00017-T

description: Age: 41, ER status: positive, Node status: positive, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 2, Overall survival event: DOD or DOC, Overall survival months: 8, Single Sample Predictor Subtype: LuminalA


title: BR-99-0622

description: Age: 49, ER status: negative, Node status: positive, grade: 3, Size: 1 to 2cm, RFS event: relapsed or died of disease, RFS months: 22, Overall survival event: DOD or DOC, Overall survival months: 34, Single Sample Predictor Subtype: LuminalB


title: BR-03-7032

description: Age: 72, Node status: negative, grade: 3, Size: 1 to 2cm, Single Sample Predictor Subtype: Basal-like


title: BC00093-T

description: Age: 24, ER status: positive, Node status: positive, grade: 3, Size: 1 to 2cm, RFS event: relapsed or died of disease, RFS months: 8, Single Sample Predictor Subtype: HER+/ER-


title: ZR-75-1, 36h DOX

status: Public on Feb 20 2007

description: ZR-75-1, 36h DOX

hyb_protocol: Agilent direct labeling kit

scan_protocol: Fluorescent array images were collected for both Cy3 and Cy5 with a GenePix 4000B fluorescent scanner and image intensity data were extracted and analyzed with GenePix Pro 4.1 analysis software

data_processing: Data was filtered for Lowess normalized net (mean) >30 in both channels and flagged values removed, only genes with 70% good data were used, log base 2 expression ratios given in the data table.

molecule: polyA RNA

source_name: ZR-75-1 pool

label_protocol: Agilent direct labeling kit

extract_protocol: Harvest cells by scraping, use invitrogen Micro-FastTrack to extract mRNA

tag: Cell Line messenger RNA

growth_protocol: Cells grown for to 60-80% confluence in RPMI 1640 media, harvested 48 hours after feeding, 4 harvests were pooled


title: ZR-75-1, 36h sham

description: ZR-75-1, 36h sham


title: BR-03-7243

description: Age: 65, Node status: positive, Size: 2 to 5cm, Single Sample Predictor Subtype: LuminalA


title: BR-02-7055

description: Age: 36, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, Single Sample Predictor Subtype: Basal-like


title: ZR-75-1, 12h sham

description: ZR-75-1, 12h sham


title: ME16C+p53RNAi, 36h DOX

description: ME16C+p53RNAi, 36h DOX

source_name: ME16C pool

source_name: ME16C+p53RNAi, 36h DOX

growth_protocol: Cells grown for to 60-80% confluence in MEGM media (Clonetics), harvested 48 hours after feeding, 4 harvests were pooled


title: BC00067

description: Age: 72, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 28, Overall survival event: alive, Overall survival months: 28, Single Sample Predictor Subtype: Normal Breast-like

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Breast Tumor


title: ME16C, 24h DOX

description: ME16C, 24h DOX

source_name: ME16C, 24h DOX


title: ZR-75-1, 24h sham

description: ZR-75-1, 24h sham


title: ZR-75-1, 12h DOX

description: ZR-75-1, 12h DOX


title: ME16C, 24h sham

description: ME16C, 24h sham

source_name: ME16C, 24h sham


title: ME16C, 12h sham

description: ME16C, 12h sham

source_name: ME16C, 12h sham


title: ME16C, 36h sham

description: ME16C, 36h sham

source_name: ME16C, 36h sham


title: ZR-75-1, 24h DOX

description: ZR-75-1, 24h DOX


title: ME16C, 36h DOX

description: ME16C, 36h DOX

source_name: ME16C, 36h DOX


title: ZR-75-1+p53RNAi, 36h DOX

description: ZR-75-1+p53RNAi, 36h DOX

source_name: ZR-75-1+p53RNAi, 36h DOX


title: ME16C, 12h DOX

description: ME16C, 12h DOX

source_name: ME16C, 12h DOX


title: ZR-75-1+p53RNAi, 12h sham

description: ZR-75-1+p53RNAi, 12h sham

source_name: ZR-75-1+p53RNAi, 12h sham


title: ZR-75-1+p53RNAi, 36h sham

description: ZR-75-1+p53RNAi, 36h sham

source_name: ZR-75-1+p53RNAi, 36h sham


title: ZR-75-1+p53RNAi, 24h sham

description: ZR-75-1+p53RNAi, 24h sham

source_name: ZR-75-1+p53RNAi, 24h sham


title: ME16C+p53RNAi, 36h sham

description: ME16C+p53RNAi, 36h sham

source_name: ME16C+p53RNAi, 36h sham


title: ME16C+p53RNAi, 12h DOX

description: ME16C+p53RNAi, 12h DOX

source_name: ME16C+p53RNAi, 12h DOX


title: ZR-75-1+p53RNAi, 12h DOX

description: ZR-75-1+p53RNAi, 12h DOX

source_name: ZR-75-1 pool

source_name: ZR-75-1+p53RNAi, 12h DOX


title: ZR-75-1+p53RNAi, 24h DOX

description: ZR-75-1+p53RNAi, 24h DOX

source_name: ZR-75-1+p53RNAi, 24h DOX


title: ME16C+p53RNAi 24h DOX

description: ME16C+p53RNAi 24h DOX

source_name: ME16C pool

source_name: ME16C+p53RNAi 24h DOX


title: MCF-7, 36h sham

description: MCF-7, 36h sham

source_name: MCF-7 pool

source_name: MCF-7, 36h sham


title: ME16C+p53RNAi, 24h Sham

description: ME16C+p53RNAi, 24h Sham

source_name: ME16C+p53RNAi, 24h Sham


title: ME16C+p53RNAi, 12h sham

description: ME16C+p53RNAi, 12h sham

source_name: ME16C+p53RNAi, 12h sham


title: MCF-7, 24h sham

description: MCF-7, 24h sham

source_name: MCF-7, 24h sham


title: MCF-7, 12h sham

description: MCF-7, 12h sham

source_name: MCF-7, 12h sham


title: BC00087-T

description: Age: 58, ER status: positive, Node status: negative, grade: 2, Size: 2 to 5cm, Single Sample Predictor Subtype: LuminalA

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Breast Tumor


title: MCF-7, 36h DOX

description: MCF-7, 36h DOX

source_name: MCF-7, 36h DOX


title: MCF-7+p53RNAi, 36h DOX

description: MCF-7+p53RNAi, 36h DOX

source_name: MCF-7+p53RNAi, 36h DOX


title: MCF-7, 12h DOX

description: MCF-7, 12h DOX

source_name: MCF-7, 12h DOX


title: MCF-7+p53RNAi, 36h sham

description: MCF-7+p53RNAi, 36h sham

source_name: MCF-7+p53RNAi, 36h sham


title: MCF-7+p53RNAi, 24h sham

description: MCF-7+p53RNAi, 24h sham

source_name: MCF-7+p53RNAi, 24h sham


title: MCF-7, 24h DOX

description: MCF-7, 24h DOX

source_name: MCF-7, 24h DOX


title: HME-CC, 36h sham

description: HME-CC, 36h sham

source_name: HME-CC pool

source_name: HME-CC, 36h sham


title: MCF-7+p53RNAi, 12h sham

description: MCF-7+p53RNAi, 12h sham

source_name: MCF-7+p53RNAi, 12h sham


title: HME-CC, 12h DOX

description: HME-CC, 12h DOX

source_name: HME-CC, 12h DOX


title: HME-CC, 24h DOX

description: HME-CC, 24h DOX

source_name: HME-CC, 24h DOX


title: HME-CC, 24h sham

description: HME-CC, 24h sham

source_name: HME-CC, 24h sham


title: HME-CC+p53RNAi, 12h sham

description: HME-CC+p53RNAi, 12h sham

source_name: HME-CC+p53RNAi, 12h sham


title: HME-CC+p53 RNAi, 36h DOX

description: HME-CC+p53 RNAi, 36h DOX

source_name: HME-CC+p53 RNAi, 36h DOX


title: HME-CC+p53RNAi, 24h DOX

description: HME-CC+p53RNAi, 24h DOX

source_name: HME-CC+p53RNAi, 24h DOX


title: HME-CC+p53 RNAi, 36h sham

description: HME-CC+p53 RNAi, 36h sham

source_name: HME-CC+p53 RNAi, 36h sham


title: HME-CC, 36h DOX

description: HME-CC, 36h DOX

source_name: HME-CC, 36h DOX


title: MCF-7+p53RNAi, 12h DOX

description: MCF-7+p53RNAi, 12h DOX

source_name: MCF-7 pool

source_name: MCF-7+p53RNAi, 12h DOX


title: HME-CC+p53RNAi, 24h sham

description: HME-CC+p53RNAi, 24h sham

source_name: HME-CC+p53RNAi, 24h sham


title: HME-CC, 12h sham

description: HME-CC, 12h sham

source_name: HME-CC, 12h sham


title: HME-CC+p53RNAi, 12h DOX

description: HME-CC+p53RNAi, 12h DOX

source_name: HME-CC+p53RNAi, 12h DOX


title: a  NOD-scid female, 15 week submandibular gland, replicate 5

status: Public on Jul 07 2006

city: Bronx

first: Rodolfo

last: Chaparro

state: NY

address: 1300 Morris Park Avenue

department: Microbiology and Immunology

institute: Albert Einstein College of Medicine

hyb_protocol: Following fragmentation, 10 microg of cRNA were hybridized on a Murine Genome U74Av2 microarray per the manufacturer instructions (Affymetrix) without additional amplification steps.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The mean target intensity of each array was arbitrarily set to 2500.

label: biotin

source_name: 15 week old NOD-scid mouse #5 submandibular glands

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Submandibular glands were separated away from sublingual glands and connective and adipose tissue of the salivary glands before homogenization in Trizol reagent (Invitrogen).

tag: Strain

value: NOD.CB17-Prkdc scid/J

tag: Age

value: 15 weeks

tag: Gender

value: female


title: a  NOD-scid female, 15 week lacrimal gland, replicate 3

source_name: 15 week old NOD-scid mouse #3 lacrimal glands

treatment_protocol: Lacrimal glands were removed and immediately homogenized in Trizol reagent (Invitrogen).


title: a  NOD-scid female, 15 week lacrimal gland, replicate 4

source_name: 15 week old NOD-scid mouse #4 lacrimal glands


title: a  NOD-scid female, 15 week submandibular gland, replicate 4

source_name: 15 week old NOD-scid mouse #4 submandibular glands


title: a  C57BL/6-scid female, 15 week lacrimal gland, replicate 3

source_name: 15 week old B6-scid mouse #3 lacrimal glands

value: B6.CB17-Prkdc scid/SzJ


title: a  NOD-scid female, 15 week lacrimal gland, replicate 1

source_name: 15 week old NOD-scid mouse #1 lacrimal glands


title: a  NOD-scid female, 15 week lacrimal gland, replicate 2

source_name: 15 week old NOD-scid mouse #2 lacrimal glands


title: a  C57BL/6-scid female, 15 week lacrimal gland, replicate 4

source_name: 15 week old B6-scid mouse #4 lacrimal glands


title: a  C57BL/6-scid female, 15 week lacrimal gland, replicate 1

source_name: 15 week old B6-scid mouse #1 lacrimal glands


title: a  NOD-scid female, 15 week submandibular gland, replicate 2

source_name: 15 week old NOD-scid mouse #2 submandibular glands


title: a  NOD-scid female, 15 week submandibular gland, replicate 1

source_name: 15 week old NOD-scid mouse #1 submandibular glands


title: a  NOD-scid female, 15 week submandibular gland, replicate 3

source_name: 15 week old NOD-scid mouse #3 submandibular glands


title: a  C57BL/6-scid female, 15 week lacrimal gland, replicate 2

source_name: 15 week old B6-scid mouse #2 lacrimal glands


title: a  C57BL/6-scid female, 15 week lacrimal gland, replicate 5

source_name: 15 week old B6-scid mouse #5 lacrimal glands


title: a  C57BL/6-scid female, 15 week submandibular gland, replicate 1

source_name: 15 week old B6-scid mouse #1 submandibular glands


title: a  C57BL/6-scid female, 15 week submandibular gland, replicate 4

source_name: 15 week old B6-scid mouse #4 submandibular glands


title: a  C57BL/6-scid female, 15 week submandibular gland, replicate 2

source_name: 15 week old B6-scid mouse #2 submandibular glands


title: a  C57BL/6-scid female, 15 week submandibular gland, replicate 5

source_name: 15 week old B6-scid mouse #5 submandibular glands


title: a  NOD-scid female, 9 week submandibular gland, replicate 3

source_name: 9 week old NOD-scid mouse #3 submandibular glands

value: 9 weeks


title: a  C57BL/6-scid female, 9 week submandibular gland, replicate 3

source_name: 9 week old B6-scid mouse #3 submandibular glands


title: a  NOD-scid female, 9 week submandibular gland, replicate 2

source_name: 9 week old NOD-scid mouse #2 submandibular glands


title: a  NOD-scid female, 9 week submandibular gland, replicate 1

source_name: 9 week old NOD-scid mouse #1 submandibular glands


title: a  C57BL/6-scid female, 9 week submandibular gland, replicate 4

source_name: 9 week old B6-scid mouse #4 submandibular glands


title: a  NOD-scid female, 9 week submandibular gland, replicate 5

source_name: 9 week old NOD-scid mouse #5 submandibular glands


title: a  C57BL/6-scid female, 9 week submandibular gland, replicate 5

source_name: 9 week old B6-scid mouse #5 submandibular glands


title: a  NOD-scid female, 9 week submandibular gland, replicate 4

source_name: 9 week old NOD-scid mouse #4 submandibular glands


title: a  C57BL/6-scid female, 9 week submandibular gland, replicate 2

source_name: 9 week old B6-scid mouse #2 submandibular glands


title: a  C57BL/6-scid female, 15 week submandibular gland, replicate 3

source_name: 15 week old B6-scid mouse #3 submandibular glands


title: a  C57BL/6-scid female, 9 week submandibular gland, replicate 1

source_name: 9 week old B6-scid mouse #1 submandibular glands


title: a  NOD-scid female, 6 week pancreas, replicate 5

source_name: 6 week old NOD-scid mouse #5 pancreas

treatment_protocol: pancreas was removed and immediately homogenized in Trizol reagent (Invitrogen).

value: 6 weeks


title: a  C57BL/6-scid female, 6 week pancreas, replicate 3

source_name: 6 week old B6-scid mouse #3 pancreas


title: a  C57BL/6-scid female, 6 week pancreas, replicate 4

source_name: 6 week old B6-scid mouse #4 pancreas


title: a  C57BL/6-scid female, 6 week pancreas, replicate 2

source_name: 6 week old B6-scid mouse #2 pancreas


title: a  C57BL/6-scid female, 6 week pancreas, replicate 5

source_name: 6 week old B6-scid mouse #5 pancreas


title: a  NOD-scid female, 6 week pancreas, replicate 3

source_name: 6 week old NOD-scid mouse #3 pancreas


title: a  NOD-scid female, 6 week pancreas, replicate 4

source_name: 6 week old NOD-scid mouse #4 pancreas


title: a  NOD-scid female, 6 week pancreas, replicate 1

source_name: 6 week old NOD-scid mouse #1 pancreas


title: MCF-7+p53RNAi, 24h DOX

description: MCF-7+p53RNAi, 24h DOX

source_name: MCF-7 pool

source_name: MCF-7+p53RNAi, 24h DOX


title: a  C57BL/6-scid female, 6 week pancreas, replicate 1

source_name: 6 week old B6-scid mouse #1 pancreas


title: b NOD-scid female, 15 week lacrimal gland, replicate 2

source_name: 15 week old NOD-scid mouse #2 lacrimal glands


title: a  NOD-scid female, 6 week pancreas, replicate 2

source_name: 6 week old NOD-scid mouse #2 pancreas


title: b C57BL/6-scid female, 15 week lacrimal gland, replicate 4

source_name: 15 week old B6-scid mouse #4 lacrimal glands


title: b C57BL/6-scid female, 15 week lacrimal gland, replicate 5

source_name: 15 week old B6-scid mouse #5 lacrimal glands


title: b NOD-scid female, 15 week lacrimal gland, replicate 3

source_name: 15 week old NOD-scid mouse #3 lacrimal glands


title: b NOD-scid female, 15 week lacrimal gland, replicate 4

source_name: 15 week old NOD-scid mouse #4 lacrimal glands


title: b C57BL/6-scid female, 15 week lacrimal gland, replicate 2

source_name: 15 week old B6-scid mouse #2 lacrimal glands


title: b NOD-scid female, 15 week submandibular gland, replicate 4

source_name: 15 week old NOD-scid mouse #4 submandibular glands


title: b NOD-scid female, 15 week lacrimal gland, replicate 1

source_name: 15 week old NOD-scid mouse #1 lacrimal glands


title: b C57BL/6-scid female, 15 week submandibular gland, replicate 4

source_name: 15 week old B6-scid mouse #4 submandibular glands


title: b C57BL/6-scid female, 15 week submandibular gland, replicate 2

source_name: 15 week old B6-scid mouse #2 submandibular glands


title: b C57BL/6-scid female, 15 week lacrimal gland, replicate 3

source_name: 15 week old B6-scid mouse #3 lacrimal glands


title: b C57BL/6-scid female, 15 week submandibular gland, replicate 1

source_name: 15 week old B6-scid mouse #1 submandibular glands


title: b NOD-scid female, 15 week submandibular gland, replicate 3

source_name: 15 week old NOD-scid mouse #3 submandibular glands


title: b C57BL/6-scid female, 15 week submandibular gland, replicate 5

source_name: 15 week old B6-scid mouse #5 submandibular glands


title: b C57BL/6-scid female, 15 week submandibular gland, replicate 3

source_name: 15 week old B6-scid mouse #3 submandibular glands


title: b NOD-scid female, 15 week submandibular gland, replicate 1

source_name: 15 week old NOD-scid mouse #1 submandibular glands


title: b NOD-scid female, 15 week submandibular gland, replicate 2

source_name: 15 week old NOD-scid mouse #2 submandibular glands


title: b NOD-scid female, 9 week submandibular gland, replicate 5

source_name: 9 week old NOD-scid mouse #5 submandibular glands


title: b NOD-scid female, 9 week submandibular gland, replicate 4

source_name: 9 week old NOD-scid mouse #4 submandibular glands


title: b NOD-scid female, 9 week submandibular gland, replicate 3

source_name: 9 week old NOD-scid mouse #3 submandibular glands


title: b NOD-scid female, 15 week submandibular gland, replicate 5

source_name: 15 week old NOD-scid mouse #5 submandibular glands


title: b C57BL/6-scid female, 15 week lacrimal gland, replicate 1

source_name: 15 week old B6-scid mouse #1 lacrimal glands


title: b NOD-scid female, 9 week submandibular gland, replicate 1

source_name: 9 week old NOD-scid mouse #1 submandibular glands


title: b C57BL/6-scid female, 9 week submandibular gland, replicate 4

source_name: 9 week old B6-scid mouse #4 submandibular glands


title: b C57BL/6-scid female, 9 week submandibular gland, replicate 3

source_name: 9 week old B6-scid mouse #3 submandibular glands


title: b C57BL/6-scid female, 9 week submandibular gland, replicate 5

source_name: 9 week old B6-scid mouse #5 submandibular glands


title: b NOD-scid female, 9 week submandibular gland, replicate 2

source_name: 9 week old NOD-scid mouse #2 submandibular glands


title: b C57BL/6-scid female, 9 week submandibular gland, replicate 2

source_name: 9 week old B6-scid mouse #2 submandibular glands


title: b NOD-scid female, 6 week pancreas, replicate 1

source_name: 6 week old NOD-scid mouse #1 pancreas


title: b NOD-scid female, 6 week pancreas, replicate 2

source_name: 6 week old NOD-scid mouse #2 pancreas


title: b NOD-scid female, 6 week pancreas, replicate 5

source_name: 6 week old NOD-scid mouse #5 pancreas


title: b C57BL/6-scid female, 6 week pancreas, replicate 5

source_name: 6 week old B6-scid mouse #5 pancreas


title: b C57BL/6-scid female, 6 week pancreas, replicate 4

source_name: 6 week old B6-scid mouse #4 pancreas


title: b C57BL/6-scid female, 6 week pancreas, replicate 3

source_name: 6 week old B6-scid mouse #3 pancreas


title: b NOD-scid female, 6 week pancreas, replicate 4

source_name: 6 week old NOD-scid mouse #4 pancreas


title: b C57BL/6-scid female, 6 week pancreas, replicate 2

source_name: 6 week old B6-scid mouse #2 pancreas


title: c NOD-scid female, 15 week lacrimal gland, replicate 4

source_name: 15 week old NOD-scid mouse #4 lacrimal glands


title: b C57BL/6-scid female, 6 week pancreas, replicate 1

source_name: 6 week old B6-scid mouse #1 pancreas


title: c NOD-scid female, 15 week lacrimal gland, replicate 1

source_name: 15 week old NOD-scid mouse #1 lacrimal glands


title: c C57BL/6-scid female, 15 week lacrimal gland, replicate 4

source_name: 15 week old B6-scid mouse #4 lacrimal glands


title: c C57BL/6-scid female, 15 week lacrimal gland, replicate 5

source_name: 15 week old B6-scid mouse #5 lacrimal glands


title: c NOD-scid female, 15 week lacrimal gland, replicate 2

source_name: 15 week old NOD-scid mouse #2 lacrimal glands


title: b NOD-scid female, 6 week pancreas, replicate 3

source_name: 6 week old NOD-scid mouse #3 pancreas


title: b C57BL/6-scid female, 9 week submandibular gland, replicate 1

source_name: 9 week old B6-scid mouse #1 submandibular glands


title: c C57BL/6-scid female, 15 week lacrimal gland, replicate 2

source_name: 15 week old B6-scid mouse #2 lacrimal glands


title: c NOD-scid female, 15 week lacrimal gland, replicate 3

source_name: 15 week old NOD-scid mouse #3 lacrimal glands


title: c NOD-scid female, 15 week submandibular gland, replicate 5

source_name: 15 week old NOD-scid mouse #5 submandibular glands


title: c NOD-scid female, 15 week submandibular gland, replicate 4

source_name: 15 week old NOD-scid mouse #4 submandibular glands


title: c C57BL/6-scid female, 15 week submandibular gland, replicate 3

source_name: 15 week old B6-scid mouse #3 submandibular glands


title: c NOD-scid female, 15 week submandibular gland, replicate 2

source_name: 15 week old NOD-scid mouse #2 submandibular glands


title: c C57BL/6-scid female, 15 week submandibular gland, replicate 5

source_name: 15 week old B6-scid mouse #5 submandibular glands


title: c C57BL/6-scid female, 15 week submandibular gland, replicate 1

source_name: 15 week old B6-scid mouse #1 submandibular glands


title: c NOD-scid female, 15 week submandibular gland, replicate 3

source_name: 15 week old NOD-scid mouse #3 submandibular glands


title: c C57BL/6-scid female, 15 week lacrimal gland, replicate 1

source_name: 15 week old B6-scid mouse #1 lacrimal glands


title: c C57BL/6-scid female, 15 week submandibular gland, replicate 2

source_name: 15 week old B6-scid mouse #2 submandibular glands


title: c NOD-scid female, 9 week submandibular gland, replicate 4

source_name: 9 week old NOD-scid mouse #4 submandibular glands


title: c NOD-scid female, 9 week submandibular gland, replicate 5

source_name: 9 week old NOD-scid mouse #5 submandibular glands


title: c NOD-scid female, 15 week submandibular gland, replicate 1

source_name: 15 week old NOD-scid mouse #1 submandibular glands


title: c NOD-scid female, 9 week submandibular gland, replicate 2

source_name: 9 week old NOD-scid mouse #2 submandibular glands


title: c C57BL/6-scid female, 15 week lacrimal gland, replicate 3

source_name: 15 week old B6-scid mouse #3 lacrimal glands


title: c C57BL/6-scid female, 9 week submandibular gland, replicate 5

source_name: 9 week old B6-scid mouse #5 submandibular glands


title: c C57BL/6-scid female, 15 week submandibular gland, replicate 4

source_name: 15 week old B6-scid mouse #4 submandibular glands


title: c C57BL/6-scid female, 9 week submandibular gland, replicate 4

source_name: 9 week old B6-scid mouse #4 submandibular glands


title: c C57BL/6-scid female, 9 week submandibular gland, replicate 2

source_name: 9 week old B6-scid mouse #2 submandibular glands


title: c NOD-scid female, 9 week submandibular gland, replicate 3

source_name: 9 week old NOD-scid mouse #3 submandibular glands


title: c NOD-scid female, 9 week submandibular gland, replicate 1

source_name: 9 week old NOD-scid mouse #1 submandibular glands


title: c C57BL/6-scid female, 9 week submandibular gland, replicate 1

source_name: 9 week old B6-scid mouse #1 submandibular glands


title: c NOD-scid female, 6 week pancreas, replicate 4

source_name: 6 week old NOD-scid mouse #4 pancreas


title: c NOD-scid female, 6 week pancreas, replicate 5

source_name: 6 week old NOD-scid mouse #5 pancreas


title: c C57BL/6-scid female, 9 week submandibular gland, replicate 3

source_name: 9 week old B6-scid mouse #3 submandibular glands


title: c NOD-scid female, 6 week pancreas, replicate 3

source_name: 6 week old NOD-scid mouse #3 pancreas


title: c C57BL/6-scid female, 6 week pancreas, replicate 4

source_name: 6 week old B6-scid mouse #4 pancreas


title: c NOD-scid female, 6 week pancreas, replicate 2

source_name: 6 week old NOD-scid mouse #2 pancreas


title: c C57BL/6-scid female, 6 week pancreas, replicate 5

source_name: 6 week old B6-scid mouse #5 pancreas


title: c C57BL/6-scid female, 6 week pancreas, replicate 3

source_name: 6 week old B6-scid mouse #3 pancreas


title: c C57BL/6-scid female, 6 week pancreas, replicate 2

source_name: 6 week old B6-scid mouse #2 pancreas


title: c C57BL/6-scid female, 6 week pancreas, replicate 1

source_name: 6 week old B6-scid mouse #1 pancreas


title: PB479(RTPCR:PB479)

status: Public on Jan 31 2006

description:
Breast Tumor. Age: 52, ER status: positive, Node status: positive, grade: 3, Size: 2 to 5cm
Keywords = Breast cancer, Gene expression,Microarrays,Quantitative RT-PCR,Prognosis,Estrogen Receptor,HER2

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Breast Tumor


title: ME16C-2-10-21-03

status: Public on Jan 09 2006

description: Cell Line. Single Sample Predictor Subtype: Basal-like

source_name: Human Cell line: ME16C, hTERT immortalized HMEC


title: PB432(RTPCR:PB432)

description:
Breast Tumor. Age: 79, ER status: positive, Node status: positive, grade: 3, Size: 2 to 5cm
Keywords = Breast cancer, Gene expression,Microarrays,Quantitative RT-PCR,Prognosis,Estrogen Receptor,HER2


title: UB-28

description: Age: 46, ER status: negative, Node status: positive or more nodes, grade: 3, Size: 1 to 2cm, RFS event: no relapse, RFS months: 30, Overall survival event: alive, Overall survival months: 30

tag: reference

tag: age

tag: er  (1=positive; 0=negative)


title: UB-22

description: Node status: negative, RFS event: no relapse, RFS months: 25, Overall survival months: 25, Single Sample Predictor Subtype: Normal Breast-like

source_name: Fibroadenoma, no malignancy


title: PB284(RTPCR:PB284)

description:
Breast Tumor. Age: 34, ER status: positive, Node status: negative, grade: 1, Size: 1 to 2cm
Keywords = Breast cancer, Gene expression,Microarrays,Quantitative RT-PCR,Prognosis,Estrogen Receptor,HER2


title: MB85

description: Age: 77, ER status: positive, Node status: positive, grade: 3, Size: 2 to 5cm, Single Sample Predictor Subtype: LuminalB


title: MCF7-10-21-03

description: Cell Line. Single Sample Predictor Subtype: LuminalB

source_name: Human Cell line: MCF7, Luminal epithelial ER+


title: MB76

description: Age: 57, ER status: positive, Node status: negative, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 22, Overall survival event: alive, Overall survival months: 22, Single Sample Predictor Subtype: LuminalA


title: MB75

description: Age: 53, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 20, Overall survival event: alive, Overall survival months: 20, Single Sample Predictor Subtype: HER+/ER-


title: MB81

description: Age: 84, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 13, Overall survival event: alive, Overall survival months: 16, Single Sample Predictor Subtype: LuminalA


title: MB86-MET-LN

description: Age: 72, ER status: negative, Node status: positive, grade: 3, RFS event: relapsed or died of disease, RFS months: 15, Overall survival event: alive, Overall survival months: 41, Single Sample Predictor Subtype: Basal-like

source_name: Breast Tumor lymph node metastasis


title: PB407(RTPCR:PB407)

description:
Breast Tumor. Age: 56, ER status: positive, Node status: positive, grade: 3, Size: larger than 5cm
Keywords = Breast cancer, Gene expression,Microarrays,Quantitative RT-PCR,Prognosis,Estrogen Receptor,HER2


title: MB79

description: Age: 63, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 18, Overall survival event: alive, Overall survival months: 18, Single Sample Predictor Subtype: LuminalA


title: MB78

description: Age: 56, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, Single Sample Predictor Subtype: Normal Breast-like


title: MB80

description: Age: 58, ER status: positive, grade: 3, Size: 2 to 5cm, Single Sample Predictor Subtype: LuminalB


title: MB87-MET-Small intest

description: Age: 73, ER status: negative, Node status: positive, grade: 3, Single Sample Predictor Subtype: Normal Breast-like

source_name: Breast tumor metastasis to the small intestine


title: MB77

description: Age: 63, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 22, Overall survival event: alive, Overall survival months: 22, Single Sample Predictor Subtype: LuminalA


title: SKBR3

description: Cell Line. Single Sample Predictor Subtype: HER+/ER-

source_name: Human Cell line: SKBR3, HER2-amplified


title: BC00079

status: Public on Dec 08 2005

description: Age: 79, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 14, Overall survival event: alive, Overall survival months: 47, Single Sample Predictor Subtype: LuminalA

source_name: Breast Tumor, tamoxifen-treated patient

tag: pgr  (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)


title: UB-27

description: Age: 91, ER status: positive, Node status: positive, grade: 2, Size: larger than 5cm, RFS event: no relapse, RFS months: 29, Overall survival event: alive, Overall survival months: 29, Single Sample Predictor Subtype: LuminalA


title: BC00061

description: Age: 41, ER status: positive, Node status: positive, grade: 3, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 59, Overall survival event: DOD or DOC, Overall survival months: 62, Single Sample Predictor Subtype: LuminalA

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: grade


title: 9830-030562B

description: Age: 70, ER status: positive, Node status: negative, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 5, Overall survival event: alive, Overall survival months: 5, Single Sample Predictor Subtype: LuminalA

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)


title: BC00040

description: Age: 74, ER status: negative, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 67, Overall survival event: alive, Overall survival months: 67, Single Sample Predictor Subtype: LuminalA

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)


title: BC00042

description: Age: 78, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 54, Overall survival event: DOD or DOC, Overall survival months: 54, Single Sample Predictor Subtype: LuminalA

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)


title: 9830-000471B

description: Age: 81, ER status: positive, Node status: negative, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 46, Overall survival event: alive, Overall survival months: 47, Single Sample Predictor Subtype: LuminalA

tag: dscores unc337


title: 9830-000424B

description: Age: 48, ER status: positive, Node status: negative, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 38, Overall survival event: alive, Overall survival months: 38, Single Sample Predictor Subtype: LuminalA


title: GATA3 M1 df 293T

status: Public on Dec 01 2005

description:
Dye flip: 293T cells stably transfected with GATA3 R367-L pBabe-puro(7/28R) versus Empty pBabe-puro Gateway reading frame A (7/28R)
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor

source_name: GATA3 Mutant 1 R367-L

source_name: Empty pBabe-puro


title: GATA3 M1 293T

description:
293T cells stably transfected with GATA3 R367-L pBabe-puro(7/28R) versus Empty pBabe-puro Gateway reading frame A (7/28R)
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor


title: c NOD-scid female, 6 week pancreas, replicate 1

source_name: 6 week old NOD-scid mouse #1 pancreas

tag: Strain


title: PB211

description: Age: 42, ER status: positive, Node status: positive or more nodes, Size: 1 to 2cm, RFS event: no relapse, RFS months: 22, Overall survival event: alive, Overall survival months: 22


title: MB83

description: Age: 31, ER status: negative, Node status: negative, grade: 3, Size: 2 to 5cm, Single Sample Predictor Subtype: Basal-like


title: GATA3 wt df

description:
Dye flip: 293T cells stably transfected with wild type GATA3 in pBabe-puro (7/28R)versus Empty pBabe-puro Gateway reading frame A plasmid (7/28R)
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor

source_name: GATA3 wt pBabe-puro


title: GATA3 wt -2 293T

description:
293T cells stably transfected with wild type GATA3 in pBabe-puro (7/28R)versus Empty pBabe-puro Gateway reading frame A plasmid (7/28R)-New RNA harvest 9/04
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor


title: MCF7 Estrogen deprivation (48h) x Estrogen Add-back (4h) #2a

description:
MCF7 Estrogen deprivation (48h) x Estrogen Add-back (4h)
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor

source_name: Estrogen deprivation (48h)

source_name: Estrogen add-back (4h)


title: MCF7 Estrogen deprivation (48h) x Estrogen Add-back (24h) #2a

description:
MCF7 Estrogen deprivation (48h) x Estrogen Add-back (24h)
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor

source_name: Estrogen add-back (24h)


title: Breast-M6-Arm-Met

status: Public on Nov 23 2005

description: Single Sample Predictor Subtype: Basal-like

source_name: breast tumor recurrence in arm from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-Primary-P6


description:
MCF7 Estrogen deprivation (48h) x Estrogen Add-back (24h) dye flip
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor


title: Breast-Primary-P6

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: primary breast tumor from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-M6-Arm-Met


title: Breast-M7-Lung-Met

description: Single Sample Predictor Subtype: Normal Breast-like

source_name: breast tumor recurrence in lung from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-Primary-P7


title: BC00066

description: Age: 43, ER status: negative, Node status: positive, grade: 3, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 18, Overall survival event: DOD or DOC, Overall survival months: 18, Single Sample Predictor Subtype: LuminalA

source_name: Breast Tumor


title: MCF7 Estrogen deprivation (48h) x Estrogen Add-back (8h) #2a

description:
MCF7 Estrogen deprivation (48h) x Estrogen Add-back (8h)
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor

source_name: Estrogen add-back (8h)


title: MCF7 Estrogen deprivation (48h) x Estrogen Add-back (8h) dye flip

description:
MCF7 Estrogen deprivation (48h) x Estrogen Add-back (8h)dye flip
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor


title: Breast-M5-Lung-Met

description: Single Sample Predictor Subtype: HER+/ER-

source_name: breast tumor recurrence in lung from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-Primary-P5


title: Breast-Primary-P3

source_name: primary breast tumor from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-M3-LN-Met


title: Breast-Primary-P5

source_name: primary breast tumor from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-M5-Lung-Met


description:
MCF7 Estrogen deprivation (48h) x Estrogen Add-back (4h) dye flip
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor


title: Breast-M8-Ovary-Met

description: Single Sample Predictor Subtype: LuminalA

source_name: breast tumor recurrence in ovary from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-Primary-P8


title: GATA3 wt  -1 293T

description:
293T cells stably transfected with wild type GATA3 in pBabe-puro (7/28R)versus Empty pBabe-puro Gateway reading frame A plasmid (7/28R)
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor


title: Breast-Primary-P8

source_name: primary breast tumor from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-M8-Ovary-Met


description:
MCF7 Estrogen deprivation (48h) x Estrogen Add-back (2h) dye flip
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor

source_name: Estrogen add-back (2h)


title: Breast-M3-LN-Met

source_name: breast tumor recurrence in lymph node from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-Primary-P3


title: Breast-Primary-P7

source_name: primary breast tumor from Weigelt et al, PNAS 100(26):15901-5 (2003), paired with Breast-M7-Lung-Met


title: UB58

description: Age: 58, ER status: positive, Node status: positive or more nodes, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 19, Overall survival event: alive, Overall survival months: 19


title: A1-13_Liver-Met

source_name: Autopsy patient #1 liver metastasis from breast


title: BR01-0123

description: Age: 49, ER status: negative, Node status: positive, grade: 2, Size: larger than 5cm, RFS event: relapsed or died of disease, RFS months: 31, Overall survival event: alive, Overall survival months: 41, Single Sample Predictor Subtype: HER2+/ER-


title: A7-Diaphragm-Met

source_name: Autopsy patient #7 Diaphragm metastasis from breast


title: PB267

description: Age: 44, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 20, Overall survival event: alive, Overall survival months: 20, Single Sample Predictor Subtype: Basal-like


title: A7-Kidney-Met

source_name: Autopsy patient #7 Kidney metastasis from breast


title: A8-Liver-Met

source_name: Autopsy patient #8 Liver metastasis from breast


title: MCF7 Estrogen deprivation (48h) x Estrogen Add-back (2h) #2a

description:
MCF7 Estrogen deprivation (48h) x Estrogen Add-back (2h)
Keywords = Breast cancer,Gene expression,Microarrays,Prognosis,Estrogen Receptor,Progesterone Receptor

source_name: Estrogen deprivation (48h)


title: PB196

description: Intrinsic pair:pair 16. Age: 34, ER status: negative, Node status: positive, grade: 3, Size: 2 to 5cm, RFS event: relapsed or died of disease, RFS months: 6, Overall survival event: alive, Overall survival months: 12, Single Sample Predictor Subtype: Basal-like

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Breast Tumor, with paired metastasis sample


title: A7-Liver-Met

source_name: Autopsy patient #7 Liver metastasis from breast


title: PB196-LN-Met

description: Intrinsic pair:pair 16 of PB196. Single Sample Predictor Subtype: Basal-like

source_name: Breast Tumor lymph node metastasis, with paired primary tumor


title: PB277

description: Age: 46, ER status: positive, Node status: positive or more nodes, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 12, Overall survival event: alive, Overall survival months: 12

source_name: Breast Tumor


title: BC00085

description: Age: 24, ER status: negative, Node status: negative, grade: 2, Size: 1 to 2cm, RFS event: no relapse, RFS months: 19, Overall survival event: alive, Overall survival months: 19, Single Sample Predictor Subtype: Basal-like


title: UB79

description: Intrinsic pair:pair 24. Age: 46, ER status: positive, Node status: positive, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 2, Overall survival event: alive, Overall survival months: 2, Single Sample Predictor Subtype: LuminalB


title: PB362

description: Age: 64, ER status: positive, Node status: negative, grade: 3, Size: 2 to 5cm, RFS event: no relapse, RFS months: 16, Overall survival event: alive, Overall survival months: 16, Single Sample Predictor Subtype: Normal Breast-like


title: ZR-75-1-D-1st-stripped

status: Public on Feb 23 2005

description:
Breast tumor derived luminal epithelial cell line ZR-75-1
Keywords = Agilent microarray, Stripped arrays, Replicate reproducibility

source_name: Breast tumor derived luminal epithelial cell line ZR-75-1 (ATCC Number:CRL-1500)


title: ZR-75-1-C-1st-stripped


title: Sum149-D-2nd-stripped

description:
Breast tumor derived line SUM149
Keywords = Agilent microarray, Stripped arrays, Replicate reproducibility

source_name: "Breast tumor derived line SUM149 (Ethier et al., Cancer Res, 53: 627-635, 1993)"


title: ZR-75-1-A


title: ZR-75-1-B-2nd-stripped


title: ZR-75-1-A-2nd-stripped


title: ZR-75-1-B


title: Sum149-C-2nd-stripped


title: Sum149-D


title: UB62

description: Age: 28, ER status: positive, Node status: positive, grade: 1, Size: 1 to 2cm, RFS event: no relapse, RFS months: 9, Overall survival event: alive, Overall survival months: 9, Single Sample Predictor Subtype: Normal Breast-like


title: Sum149-C


title: A1-4-Spinal-Met

description: Single Sample Predictor Subtype: Basal-like

source_name: Autopsy patient #1 Spinal Cord metastasis from breast


title: A1-20_AxLN-Met

source_name: Autopsy patient #1 Axillary Lymph Node metastasis from breast


title: Lung-Tumor-A-stripped

description:
Primary human lung tumor
Keywords = Agilent microarray, Stripped arrays, Replicate reproducibility

source_name: Primary human lung tumor 1


title: Sum149-A-1st-stripped


title: Lung-Tumor-B-stripped


title: Breat-Tumor-C-stripped

description:
Primary human breast tumor
Keywords = Agilent microarray, Stripped arrays, Replicate reproducibility

source_name: Primary human breast tumor 1


title: Breast-Tumor-B


title: H1A6433-2989V2

status: Public on Oct 15 2004

description:
Primary tumor of Breast (Carcinoma) with a Basal-like Gene expression profile
Keywords = Agilent microarray, EGFR, keratin

source_name: Total RNA from Modified Stratagene Universal Reference (Human Universal Reference plus 1/10 RNA from MCF7 and 1/10 RNA from ME16C)

source_name: Total RNA from Human Breast Carcinoma BC00-0572B (basal-like gene expression subtype)


title: Breast-Tumor-D-stripped


title: MCF-7, 36h, 40uM ETOP

status: Public on Sep 10 2004

description:
breast cancer derived cell line treated with 40 uM of etoposide for 36 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of MCF-7 cells

source_name: "mRNA from MCF-7, 36h, 40uM ETOP"


title: Sum149-B-1st-stripped


title: A7-Lung-Met

source_name: Autopsy patient #7 Lung metastasis from breast


title: H1AUNC10006

status: Public on May 24 2004

description:
293T_Gata3_M1_7/28DyeflipB
Keywords = Human Breast Cancer
Keywords = Agilent Microarray Gene Expression
Keywords = GATA3 Mutation

source_name: mRNA from 293T kidney epithelial cell line infected with retrovirus containing GATA3 R367L mutant cDNA in pBabe-puro plasmid

source_name: Pooled mRNA from three independent retroviral infections of 293T cells using pBabe-puro empty plasmid


title: HME-CC, 36h, 10uM ETOP

description:
breast cancer derived cell line treated with 10 uM of etoposide for 36 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of HME-CC cells

source_name: "mRNA from HME-CC, 36h, 10uM ETOP"


title: HME-CC, 12h, 10uM ETOP

description:
breast cancer derived cell line treated with 10 uM of etoposide for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: "mRNA from HME-CC, 12h, 10uM ETOP"


title: Lung-Tumor-D

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs


title: ME16C, 12h, 20uM ETOP

description:
breast cancer derived cell line treated with 20 uM of etoposide for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of ME16C cells

source_name: "mRNA from ME16C, 12h, 20uM ETOP"


title: H1AUNC10007

description:
293T_Gata3_M3_8/18DyeflipA
Keywords = Human Breast Cancer
Keywords = Agilent Microarray Gene Expression
Keywords = GATA3 Mutation

source_name: mRNA from 293T kidney epithelial cell line infected with retrovirus containing GATA3 R367-STOP mutant cDNA in pBabe-puro plasmid


title: H1A6261-1490V2

source_name: Total RNA from Human Breast Carcinoma BC97-0137B (basal-like gene expression subtype)


title: MCF-7, 12h, 40uM ETOP

description:
breast cancer derived cell line treated with 40 uM of etoposide for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: "mRNA from MCF-7, 12h, 40uM ETOP"


title: ME16C, 36h, 20uM ETOP

description:
breast cancer derived cell line treated with 20 uM of etoposide for 36 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: "mRNA from ME16C, 36h, 20uM ETOP"


title: ZR-75-1, 12h, 30uM ETOP

description:
breast cancer derived cell line treated with 30 uM of etoposide for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of ZR-75-1 cells

source_name: "mRNA from ZR-75-1, 12h, 30uM ETOP"


title: H1AUNC10008

description:
293T_Gata3_M3_8/18DyeflipB
Keywords = Human Breast Cancer
Keywords = Agilent Microarray Gene Expression
Keywords = GATA3 Mutation


title: H1A9529-0094C

source_name: Total RNA from Modified Stratagene Universal Reference (Human Universal Reference plus 1/10 RNA from MCF7 and 1/10 RNA from ME16C)

source_name: Total RNA from Human Breast Carcinoma A02-26-2 (basal-like gene expression subtype)


title: Breast-Tumor-A

source_name: Primary human breast tumor 1


title: ZR-75-1, 36h, 30uM ETOP

description:
breast cancer derived cell line treated with 30 uM of etoposide for 36 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: "mRNA from ZR-75-1, 36h, 30uM ETOP"


title: H1AUNC10005

description:
293T_Gata3_M1_7/28DyeflipA
Keywords = Human Breast Cancer
Keywords = Agilent Microarray Gene Expression
Keywords = GATA3 Mutation

source_name: Pooled mRNA from three independent retroviral infections of 293T cells using pBabe-puro empty plasmid

source_name: mRNA from 293T kidney epithelial cell line infected with retrovirus containing GATA3 R367L mutant cDNA in pBabe-puro plasmid


title: H1AUNC10010

description:
293T_GATA3_Wt_7/28DyeflipB
Keywords = Human Breast Cancer
Keywords = Agilent Microarray Gene Expression
Keywords = GATA3 Mutation

source_name: mRNA from 293T kidney epithelial cell line infected with retrovirus containing GATA3 wild type cDNA in pBabe-puro plasmid


title: H1AUNC10009

description:
293T_Gata3_Wt_7/28DyeflipA
Keywords = Human Breast Cancer
Keywords = Agilent Microarray Gene Expression
Keywords = GATA3 Mutation


title: HN96-0671B-pair

status: Public on Apr 18 2004

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 49  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Common reference total RNA derived from 30 HNSCC samples

source_name: Total RNA from HN96-0671B-pair


title: HN97-0080B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 50  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN97-0080B


title: HN97-0189B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 58  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN97-0189B


title: HN97-0181B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 48  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN97-0181B


title: HN94-1095B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 69  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN94-1095B


title: HN96-0633B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 66  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN96-0633B


title: HN02-0408B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a female at age of 66  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0408B


title: HN03-0130B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 75  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN03-0130B


title: UB79-LN-Met

description: Intrinsic pair:pair 24 of UB79. Single Sample Predictor Subtype: LuminalB

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Breast Tumor lymph node metastasis, with paired primary tumor


title: HN94-0331B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 64  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN94-0331B


title: HN03-0079B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 30  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN03-0079B


title: HN02-0137B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 76  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0137B


title: HN02-0387B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 41  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0387B


title: HN97-0108B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a female at age of 52  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN97-0108B


title: HN03-0171B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 49  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN03-0171B


title: Lung-Tumor-C

description:
Primary human lung tumor
Keywords = Agilent microarray, Stripped arrays, Replicate reproducibility

source_name: Primary human lung tumor 1


title: HN03-0060B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 44  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Common reference total RNA derived from 30 HNSCC samples

source_name: Total RNA from HN03-0060B


title: HN02-0450B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 53  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0450B


title: HN00-0318B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 56  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN00-0318B


title: normal tonsil epithelium 1

description:
normal tonsil epithelium 1
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from normal tonsil epithelium 1


title: HN96-0671B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 49  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN96-0671B


title: HN02-0323B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 61  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0323B


title: HN96-0624B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 52  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN96-0624B


title: HN94-0165B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 68  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN94-0165B


title: HN03-0178B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 52  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN03-0178B


title: HN02-0460B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 58  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0460B


title: normal tonsil epithelium 2

description:
normal tonsil epithelium 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from normal tonsil epithelium 2


title: UB64

description: Age: 87, ER status: positive, Node status: negative, grade: 2, Size: 2 to 5cm, RFS event: no relapse, RFS months: 7, Overall survival event: alive, Overall survival months: 7, Single Sample Predictor Subtype: Normal Breast-like

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Breast Tumor


title: HN02-0422B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 66  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0422B


title: HN02-0364B-pair

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on hypopharynx on a male at age of 51  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0364B-pair


title: HN96-0071B

source_name: Total RNA from HN96-0071B


title: HN02-0427B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 60  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Common reference total RNA derived from 30 HNSCC samples

source_name: Total RNA from HN02-0427B


title: HN02-0421B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a female at age of 67  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0421B


title: HN01-0393B-pair#

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 47  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN01-0393B-pair


title: HN02-0082B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 47  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0082B


title: HN02-0183B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 49  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0183B


title: HN02-0452B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on hypopharynx on a female at age of 63  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0452B


title: HN02-0168B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 34  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0168B


title: HN02-0486B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on hypopharynx on a male at age of 59  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0486B


title: HN02-0502B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 56  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0502B


title: HN02-0085B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 55  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0085B


title: HN02-0454B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 36  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0454B


title: HN02-0168B-pair

source_name: Total RNA from HN02-0168B-pair


title: HN02-0458B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 54  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0458B


title: HN02-0152B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 50  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0152B


title: HN01-0264B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 57  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN01-0264B


title: JHU022

description:
Cell line from primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC)
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from JHU022


title: HN01-0203B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 40  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Common reference total RNA derived from 30 HNSCC samples

source_name: Total RNA from HN01-0203B


title: HN02-0486B-pair

source_name: Total RNA from HN02-0486B-pair


title: HN01-0463B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 65  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN01-0463B


title: UNC7

source_name: Total RNA from UNC7


title: HN02-0082B-pair

source_name: Total RNA from HN02-0082B-pair


title: HN02-0254B-pair

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a female at age of 57  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0254B-pair


title: CAL27

source_name: Total RNA from CAL27


title: normal tonsil epithelium 3

description:
normal tonsil epithelium 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from normal tonsil epithelium 3


title: HN02-0238B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 62  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0238B


title: HN01-0463B-pair

source_name: Total RNA from HN01-0463B-pair


title: HN02-0364B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on hypopharynx on a male at age of 51  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0364B


title: HN02-0377B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a female at age of 54  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0377B


title: HN01-0446B-pair

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 59  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN01-0446B-pair


title: HN03-0056B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 63  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN03-0056B


title: HN01-0394B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 48  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN01-0394B


title: HN02-0116B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 53  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0116B


title: HN01-0291B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 72  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Common reference total RNA derived from 30 HNSCC samples

source_name: Total RNA from HN01-0291B


title: HN02-0493B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 52  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0493B


title: HN02-0478B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 53  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0478B


title: HN02-0201B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 73  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0201B


title: HN02-0136B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 59  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0136B


title: HN03-0034B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on hypopharynx on a male at age of 64  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN03-0034B


title: HN02-0506B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a female at age of 75  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0506B


title: HN01-0393B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 47  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN01-0393B


title: HN97-0066B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on hypopharynx on a male at age of 61  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN97-0066B


title: HN02-0254B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a female at age of 57  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0254B


title: HN03-0020B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 56  with clinical stage of 3
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN03-0020B


title: HN01-0446B

source_name: Total RNA from HN01-0446B


title: HN02-0333B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on hypopharynx on a male at age of 53  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0333B


title: HN03-0102B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on larynx on a male at age of 64  with clinical stage of 2
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN03-0102B


title: HN02-0152B-2

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on oral cavity on a male at age of 50  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN02-0152B-2


title: ZR-75-1, 12h, 3.0mM 5FU C

status: Public on Apr 16 2004

description:
breast cancer derived cell line treated with 3.0 mM of 5-Fluorouracil for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of ZR-75-1 cells

source_name: mRNA from "ZR-75-1, 12h, 3.0mM 5FU C"


title: HN96-0008B

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on hypopharynx on a male at age of 77  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Common reference total RNA derived from 30 HNSCC samples

source_name: Total RNA from HN96-0008B


title: HME-CC, 24h, sham

description:
immortalized human mammary epithelial cell line treated with fresh medium for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of HME-CC cells

source_name: mRNA from "HME-CC, 24h, sham"


title: HN01-0394B-pair

description:
Primary tumor of Head and Neck Squamous Cell Carcinoma (HNSCC) located on orpharynx on a male at age of 48  with clinical stage of 4
Keywords = Head and neck cancer, gene expression profiles, microarray

source_name: Total RNA from HN01-0394B-pair


title: ME16C, 36h, 0.5uM DOX B

description:
immortalized human mammary epithelial cell line treated with 0.5 uM of Doxorubicin for 36hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of ME16C cells

source_name: mRNA from "ME16C, 36h, 0.5uM DOX B"


title: HME-CC, 24h, 0.2uM DOX B

description:
immortalized human mammary epithelial cell line treated with 0.2 uM of Doxorubicin for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "HME-CC, 24h, 0.2uM DOX B"


title: ME16C, 36h, sham

description:
immortalized human mammary epithelial cell line treated with fresh medium for 36hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "ME16C, 36h, sham"


title: ZR-75-1, 36h, sham

description:
breast cancer derived cell line treated with fresh medium for 36hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "ZR-75-1, 36h, sham"


title: ZR-75-1, 12h, sham

description:
breast cancer derived cell line treated with fresh medium for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "ZR-75-1, 12h, sham"


title: ME16C, 24h, 0.06mM 5FU B

description:
immortalized human mammary epithelial cell line treated with 0.06 mM of 5-Fluorouracil for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "ME16C, 24h, 0.06mM 5FU B"


title: HME-CC, 24h, 0.2uM DOX

source_name: mRNA from "HME-CC, 24h, 0.2uM DOX"


title: ME16C, 24h, 0.5uM DOX B

description:
immortalized human mammary epithelial cell line treated with 0.5 uM of Doxorubicin for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "ME16C, 24h, 0.5uM DOX B"


title: ZR-75-1, 24h, 0.4uM DOX B

description:
breast cancer derived cell line treated with 0.4 uM of Doxorubicin for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "ZR-75-1, 24h, 0.4uM DOX B"


title: HME-CC, 24h, 0.01mM 5FU B

description:
immortalized human mammary epithelial cell line treated with 0.01 mM of 5-Fluorouracil for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "HME-CC, 24h, 0.01mM 5FU B"


title: MCF-7, 24h, 0.9uM DOX B

description:
breast cancer derived cell line treated with 0.9 uM of Doxorubicin for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of MCF-7 cells

source_name: mRNA from "MCF-7, 24h, 0.9uM DOX B"


title: ME16C, 24h, sham

source_name: mRNA from "ME16C, 24h, sham"


title: HME-CC, 12h, 0.2uM DOX B

description:
immortalized human mammary epithelial cell line treated with 0.2 uM of Doxorubicin for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of HME-CC cells

source_name: mRNA from "HME-CC, 12h, 0.2uM DOX B"


title: ME16C, 24h, sham B

source_name: mRNA from "ME16C, 24h, sham B"


title: ZR-75-1, 12h, 0.4uM DOX

description:
breast cancer derived cell line treated with 0.4 uM of Doxorubicin for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: pooled reference mRNA from 4 harvests of ZR-75-1 cells

source_name: mRNA from "ZR-75-1, 12h, 0.4uM DOX"


title: ME16C, 36h, 0.5uM DOX

source_name: pooled reference mRNA from 4 harvests of ME16C cells

source_name: mRNA from "ME16C, 36h, 0.5uM DOX"


title: ZR-75-1, 12h, 0.4uM DOX B

source_name: mRNA from "ZR-75-1, 12h, 0.4uM DOX B"


title: MCF-7, 24h, sham B

description:
breast cancer derived cell line treated with fresh medium for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "MCF-7, 24h, sham B"


title: HME-CC, 24h, sham B

source_name: mRNA from "HME-CC, 24h, sham B"


title: ZR-75-1, 24h, sham

source_name: mRNA from "ZR-75-1, 24h, sham"


title: HME-CC, 36h, 0.2uM DOX C

description:
immortalized human mammary epithelial cell line treated with 0.2 uM of Doxorubicin for 36hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "HME-CC, 36h, 0.2uM DOX C"


title: ZR-75-1, 24h, 0.4uM DOX

source_name: mRNA from "ZR-75-1, 24h, 0.4uM DOX"


title: ZR-75-1, 12h, 3.0mM 5FU B

description:
breast cancer derived cell line treated with 3.0 mM of 5-Fluorouracil for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "ZR-75-1, 12h, 3.0mM 5FU B"


title: HME-CC, 24h, 0.01mM 5FU

source_name: mRNA from "HME-CC, 24h, 0.01mM 5FU "


title: HME-CC, 12h, sham B

description:
immortalized human mammary epithelial cell line treated with fresh medium for 12 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "HME-CC, 12h, sham B"


title: HME-CC, 12h, 0.2uM DOX

source_name: mRNA from "HME-CC, 12h, 0.2uM DOX"


title: MCF-7, 36h, sham B

source_name: pooled reference mRNA from 4 harvests of MCF-7 cells

source_name: mRNA from "MCF-7, 36h, sham B"


title: MCF-7, 24h, 0.9uM DOX

source_name: mRNA from "MCF-7, 24h, 0.9uM DOX"


title: ZR-75-1, 24h, sham B

source_name: pooled reference mRNA from 4 harvests of ZR-75-1 cells

source_name: mRNA from "ZR-75-1, 24h, sham B"


title: MCF-7, 24h, 0.3mM 5FU B

description:
breast cancer derived cell line treated with 0.3 mM of 5-Fluorouracil for 24 hours
Keywords = Breast Cancer, Chemotherapeutics, Gene expression, Microarray, Compugen

source_name: mRNA from "MCF-7, 24h, 0.3mM 5FU B"


title: MCF-7, 36h, sham

source_name: mRNA from "MCF-7, 36h, sham "


title: ME16C, 24h, 0.5uM DOX

source_name: pooled reference mRNA from 4 harvests of ME16C cells

source_name: mRNA from "ME16C, 24h, 0.5uM DOX"


title: ME16C, 12h, sham B

source_name: mRNA from "ME16C, 12h, sham B"


title: MCF-7, 24h, sham

source_name: mRNA from "MCF-7, 24h, sham"


title: ME16C, 36h, sham B

source_name: mRNA from "ME16C, 36h, sham B"