title: OGD activated microglial cells [totalRNA]

hyb_protocol: Spike controls were added to 15 µg fragmented cRNA before hybridization (36h) using 10 µg of cRNA. Arrays were washed and stained with streptavidin-phycoerythrin before being scanned on an Affymetrix GeneChip Scanner.

scan_protocol: After scanning, array images were assessed by eye to confirm scanner alignment and the absence of significant bubbles or scratches on the chip surface. The 3'/5' ratios for GAPDH and B-actin were checked for quality. BioB, BioC, BioD and CreX spike controls were also examined to determine sample quality. All arrays were scaled to a target intensity of 150 using Affymetrix GeneChip Operating System (GCOS) software.

data_processing: The data was preprocessed using the Affymetrix  QC tool where Individual feature intensities were flagged by detection calls, background subtracted, transformed through addition of a small constant and median summarized.

label_protocol: 10 µg of mRNA was used to generate first-strand cDNA using a T7-linked oligo(dT) primer. After second-strand synthesis, in vitro transcription was performed with biotinylated UTP and CTP (Enzo Kits from Affymetrix).

growth_protocol: Cells were grown in DMEM + 10% FCS

extract_protocol: Total RNA was extracted from microglial cells with or without OGD using TRIzol® Reagent (Invitrogen, San Diego, CA)


title: FaDU-C3

status: Public on Nov 23 2015

type: RNA

city: Jacksonville

first: Catherine

last: Dumur

state: FL

address: 5008 Mustang Rd

department: Anatomic Pathology

country: USA

institute: Sonic Healthcare USA

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on HG-U133A 2.0 arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Affymetrix GC3000 scanner.

data_processing: After scanning, the raw intensities for every probe were stored in electronic files (in .DAT and .CEL formats) by the Affymetrix GeneChip Operating Software (GCOSv1.4). Background correction, normalization, and estimation of probe set expression summaries was performed using the log-scale Robust Multiarray Analysis (RMA) method.

label: biotin

molecule: total RNA

organism: Homo sapiens

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 500 ng total RNA (GeneChip® Expression Analysis Technical Manual, Affymetrix).

growth_protocol: 10 million FaDu cells stably transfected with empty vector or Sh-MDA-9, in triplicate.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

tag: cell line

value: FaDu

tag: transfection

value: empty vector


title: LowerSICrypt_Fasted_Etoposide_3h_f_Rep3

city: St. Louis

first: Jinsheng

last: Yu

state: MO

address: 660 S. Euclid Ave.

department: Genetics

institute: Washington University School of Medicine

hyb_protocol: Hybridization of the labeled cDNAs was done in Agilent 2x gene expession hybrization buffer, agilent 10x blocking reagent and kreatech Kreablock onto Agilent 4x44K V2 microarrays at 65oC for 20 min

scan_protocol: Slides were scanned on an Agilent C-class Microarray scanner.

data_processing: Gridding and analysis of images was performed using Agilent Feature Extraction V11.5.1.1.

organism: Mus musculus

source_name: Jejunum, lower crypt, Fasted Etoposide, 3h

label_protocol: cDNAs were chemically labeled with Kreatech ULS RNA labeling kit (Kreatech Diagnostics) and Cy5-labeled cDNAs were hybridized to Agilent Mouse v2 4x44K microarrays (G4846A-026655).

extract_protocol: Sections were deparrafinized and dehydrated through xylene and an increasing gradient of ethanol. Laser capture microdissection was performed using the Acturus PixCell IIe, with the following settings: spot size power 80, duration 1 ms, repeat 0.2 s, target 0.150 V, current 1.82 mA. RNA was isolated from the CapSure HS LCM Caps (Applied Biosystem) using the PicoPure RNA Isolation kit (Applied Biosystems). All RNA samples were treated with DNaseI (Qiagen).

treatment_protocol: 4-6 week old, male and female Lgr5EGFP-IRES-CreERT2/+ mice were randomly assigned to one of two treatment groups.  Mice were fed or fasted for 24 h followed by injection with 80mg/kg etoposide (tail vein, i.v.) and returned to individual housed cages with moistened food pellets.  Intestines were harvested 3 h post-etoposide injection, flushed with PBS, and then flushed with ice-cold Methacarn (60% methanol, 30% chloroform, 10% acetic acid) to fix the tissue while preserving RNA integrity. Fixed intestines were rinsed with 70% ethanol, embedded in 2% agar followed by paraffin embedding.

tag: strain

tag: tissue

value: jejunum lower crypt

tag: gender

value: Female

tag: age

value: 4-6 weeks


title: 1037-203-Y8

city: Los Angeles

first: Steve

last: Cole

state: CA

address: 11-934 Factor Bldg, UCLA

department: Medicine

institute: UCLA School of Medicine

description:
raw data file: 5412581075_E.AVG_Signal
Illumina Human Ref-8 BeadArray

hyb_protocol: Illumina cRNA hybridization protocol for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).

scan_protocol: Standard Illumina scan protocol for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).

data_processing: Raw probe intensity values and quantile-normalized gene expression values were generated by Illumina GenomeStudio software using Gene Expression module 1.1.1.  All available data are provided, with no additional filtering.

source_name: PBMC

label_protocol: Ambion TotalPrep RNA amplification with biotin labeling for gene expression profiling (carried out by UCLA Neuroscience Genomics Core).

extract_protocol: Primary peripheral blood mononuclear cells were isolated and total RNA was extracted using Qiagen RNEasy.

tag: pid

tag: psi

tag: chronicpsi

tag: female

tag: hispanic

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct

value: Missing


title: 1346-095-Y8

description:
raw data file: 5412581031_E.AVG_Signal
Illumina Human Ref-8 BeadArray


title: LowerSICrypt_Fed_Etoposide_3h_m_Rep1

source_name: Jejunum, lower crypt, Fed Etoposide, 3h

tag: strain

tag: tissue

tag: gender

value: Male


title: LowerSICrypt_Fed_Etoposide_3h_f_Rep3

tag: age


title: 1794-163-Y8

description:
raw data file: 5412581075_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi

tag: chronicpsi


title: 0807-078-Y8

description:
raw data file: 5412581075_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 0418-171-Y8

description:
raw data file: 5412581031_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 0698-037-Y8

description:
raw data file: 5412581031_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: Resting microglial cells [total RNA]

city: Shanghai

first: Peng

last: Wang

address: 270 Dong An Road

department: Department of Integrative Oncology

country: China

institute: Fudan University Shanghai Cancer Center

label: Biotin

organism: Rattus norvegicus

source_name: Microglial cells

tag: strain background

value: Sprague Dawley

tag: cell type

value: microglial cell

tag: exposed to

value: none (control)


title: 0480-104-Y8

description:
raw data file: 5412581075_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: LowerSICrypt_Fasted_Etoposide_3h_m_Rep1

tag: strain

tag: tissue

tag: gender

tag: age


title: 2236-226-Y8

description:
raw data file: 5412581031_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: female

tag: hispanic

tag: black


title: 1930-187-Y8

description:
raw data file: 5412581001_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi

tag: smoke

tag: alcohol

tag: cesd


title: 2781-227-Y8

description:
raw data file: 5412581031_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: FaDU-C2

treatment_protocol: 10 million FaDu cells stably transfected with empty vector or Sh-MDA-9, in triplicate.

tag: cell line

tag: transfection


title: LowerSICrypt_Fasted_Etoposide_3h_m_Rep2

tag: strain

tag: tissue

tag: gender

tag: age


title: 1003-129-Y8

description:
raw data file: 5412581031_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: female

tag: hispanic


title: 2660-222-Y8

description:
raw data file: 5412581001_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: 1584-141-Y8

description:
raw data file: 5412581031_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: 1011-082-Y8

description:
raw data file: 5412581001_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1437-156-Y8

description:
raw data file: 5412581001_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1608-148-Y8

description:
raw data file: 5412581001_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: LowerSICrypt_Fasted_Etoposide_3h_f_Rep4

tag: strain

tag: tissue

tag: gender


title: 0760-194-Y8

description:
raw data file: 5412581031_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi

tag: age


title: 2290-214-Y8

description:
raw data file: 5412581075_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: chronicpsi

tag: female

tag: hispanic


title: 1606-117-Y8

description:
raw data file: 5412581001_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome


title: 0444-014-Y8

description:
raw data file: 5412581020_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi

tag: smoke

tag: alcohol


title: 1004-111-Y8

description:
raw data file: 5412581020_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: cesd

tag: pss

tag: socsupp


title: 0892-109-Y8

description:
raw data file: 5412581020_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: monocytepct


title: 2629-221-Y8

description:
raw data file: 5412581001_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1032-166-Y8

description:
raw data file: 5412581020_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: HSD1_knockout_Aged_222

city: G20 0SP

first: Donald

last: Dunbar

address: West of Scotland Science Park

country: United Kingdom

institute: Sistemic Ltd

description: Mouse hippocampal gene expression data

hyb_protocol: 10 ug of cRNA were hybridised overnight at 45C on Affymetrix GeneChip Mouse Genome 430 2.0 Arrays. Arrays were then washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: Affymetrix HP GeneArray scanner

data_processing: CEL files imported into Affy package in Bioconductor. Normalisation with RMA (with background subtraction). Normalized gene expression values (RMA with background subtraction) were converted to linear scale from log2 scale. R v2.8.0, Biobase_2.2.2, and affy_1.20.2

source_name: Hippocampus

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: Standard mouse cages in rodent facility. 6 or 24 months of age (see sample characteristics)

treatment_protocol: Male mice homozygous for targeted disruption of the 11b-HSD1 gene, congenic on the C57BL/6J genetic background or wild-type C57BL/6J mice (see sample characteristics)

tag: genotype/variaton

value: 11 beta HSD1 KO

value: 24 months

tag: group

value: aged

tag: strain


title: HSD1_knockout_Aged_41

description: Mouse hippocampal gene expression data

tag: age


title: Wild Type_Aged_Impaired_51

description: Mouse hippocampal gene expression data

value: Wild Type

value: impaired


title: 0434-090-Y8

description:
raw data file: 5412581001_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi

tag: chronicpsi


title: HSD1_knockout_Young_580

description: Mouse hippocampal gene expression data

value: 6 months

value: young


title: HSD1_knockout_Young_578

description: Mouse hippocampal gene expression data


title: 1500-133-Y8

description:
raw data file: 5412581020_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: HSD1_knockout_Young_585

description: Mouse hippocampal gene expression data


title: HSD1_knockout_Aged_223

description: Mouse hippocampal gene expression data


title: HSD1_knockout_Aged_42

description: Mouse hippocampal gene expression data


title: 1634-164-Y8

description:
raw data file: 5412581077_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 0165-016-Y8

description:
raw data file: 5412581077_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 1907-196-Y8

description:
raw data file: 5412581020_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 1327-150-Y8

description:
raw data file: 5412581020_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: Wild Type_Aged_Impaired_21

description: Mouse hippocampal gene expression data

tag: genotype/variaton

tag: group

tag: strain


title: 1073-132-Y8

description:
raw data file: 5412581020_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi

tag: age


title: Wild Type_Aged_Unimpaired_57

description: Mouse hippocampal gene expression data

value: unimpaired


title: Wild Type_Aged_Unimpaired_23

description: Mouse hippocampal gene expression data


title: Wild Type_Aged_Impaired_49

description: Mouse hippocampal gene expression data


title: HSD1_knockout_Young_575

description: Mouse hippocampal gene expression data


title: 1660-149-Y8

description:
raw data file: 5412581077_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: chronicpsi

tag: female

tag: hispanic


title: 1240-212-Y8

description:
raw data file: 5412581077_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome


title: 0557-015-Y8

description:
raw data file: 5412581077_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi

tag: smoke

tag: alcohol


title: 1560-112-Y8

description:
raw data file: 5412581077_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: cesd

tag: pss

tag: socsupp


title: 2263-211-Y8

description:
raw data file: 5412581024_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: monocytepct


title: Wild Type_Aged_Unimpaired_26

description: Mouse hippocampal gene expression data

tag: genotype/variaton

tag: group

tag: strain


title: 0549-093-Y8

description:
raw data file: 5412581077_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi

tag: age


title: 1373-142-Y8

description:
raw data file: 5412581024_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: chronicpsi

tag: female

tag: hispanic


title: Wild Type_Aged_Unimpaired_126

description: Mouse hippocampal gene expression data


title: 1115-087-Y8

description:
raw data file: 5412581024_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome


title: Wild Type_Young_374

description: Mouse hippocampal gene expression data


title: Wild Type_Young_373

description: Mouse hippocampal gene expression data


title: Wild Type_Aged_Impaired_14

description: Mouse hippocampal gene expression data


title: Wild Type_Young_371

description: Mouse hippocampal gene expression data


title: 1528-110-Y8

description:
raw data file: 5412581024_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi

tag: smoke

tag: alcohol


title: 0763-176-Y8

description:
raw data file: 5412581024_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: cesd

tag: pss

tag: socsupp


title: 0654-177-Y8

description:
raw data file: 5412581024_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: monocytepct


title: 0648-136-Y8

description:
raw data file: 5412581077_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: control_DZ_#3

city: Berlin

first: Lars

last: Bullinger

address: Augustenburger Platz 1

department: Hematology, Oncology and Tumorimmunology

country: Germany

institute: Charité

description: Gene expression data from mouse germinal center B cells

hyb_protocol: Hybridization, washing, and staining protocols, respectively, were performed on Affymetrix GeneChip instruments (Hybridization Oven 640, Fluidics Station FS450) as recommended by the manufacturer.

scan_protocol: Scanning was performed on Affymetrix GeneChip Scanner GCS3000 instruments as recommended by the manufacturer using default settings. The software used was GCOS 1.2 or higher.

data_processing: The data were analyzed with BRB ArrayTools using RMA. Intensity values were log2 transformed

source_name: spleen, germinal center B cells

label_protocol: For each sample preparation, total RNA was converted into double-stranded cDNA by reverse transcription using the 3' IVT Express Kit from Affymetrix according to the manufacturer's recommendations.

extract_protocol: The total RNA was purified with Qiagen RNeasy Mini kits (Qiagen).

treatment_protocol: Sorted germinal center (GC) B cell samples derived from Cgamma1-cre; YFP, P110*, FOXO1 f/f or PTEN f/f animals.

tag: cell type

value: DZ YFP


title: control_LZ_#2

value: LZ YFP


title: 0396-005-Y8

description:
raw data file: 5412581024_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: FOXO1_#2

value: total GC FOXO1 f/f


title: control_LZ_#3


title: control_LZ_#1


title: control_DZ_#2


title: Wild Type_Young_369

description: Mouse hippocampal gene expression data

tag: genotype/variaton

tag: group

tag: strain


title: 0692-036-Y8

description:
raw data file: 5392306059_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: age

tag: female


title: 1170-075-Y8

description:
raw data file: 5412581024_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: hispanic

tag: black

tag: married

tag: lnincome


title: P110*_#2

value: total GC P110*


title: 0333-126-Y8

description:
raw data file: 5392306059_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi

tag: smoke

tag: alcohol

tag: cesd

value: Missing


title: 0295-202-Y8

description:
raw data file: 5392306059_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 0653-063-Y8

description:
raw data file: 5392306059_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 1572-175-Y8

description:
raw data file: 5392306059_C.AVG_Signal
Illumina Human Ref-8 BeadArray


title: PTEN_#1

tag: cell type

value: total GC PTEN f/f


title: 0110-034-Y8

description:
raw data file: 5392306059_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi


title: 1386-198-Y8

description:
raw data file: 5392306059_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: chronicpsi


title: FOXO1_#1


title: 1125-130-Y8

description:
raw data file: 5392306056_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: age


title: 0619-020-Y8

description:
raw data file: 5392306056_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female


title: 2290-214-Y10

description:
raw data file column: 9249889072_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: hispanic


title: 1340-207-Y8

description:
raw data file: 5392306059_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black


title: 1003-129-Y10

description:
raw data file column: 9249889072_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: married


title: PTEN_#2


title: 1078-072-Y8

description:
raw data file: 5392306056_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: lnincome


title: 1011-082-Y10

description:
raw data file column: 9249889072_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: bmi


title: 0843-044-Y8

description:
raw data file: 5392306056_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke


title: 1854-192-Y8

description:
raw data file: 5392306056_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: alcohol


title: 0893-054-Y8

description:
raw data file: 5392306056_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: cesd


title: 0978-160-Y8

description:
raw data file: 5392306056_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss


title: 1828-173-Y8

description:
raw data file: 5392306044_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: socsupp


title: 1735-206-Y8

description:
raw data file: 5392306056_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: monocytepct


title: 0978-160-Y10

description:
raw data file column: 9249889095_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid


title: 1794-163-Y10

description:
raw data file column: 9249889095_L.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1437-156-Y10

description:
raw data file column: 9249889072_A.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1606-117-Y10

description:
raw data file column: 9249889095_J.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1105-033-Y10

description:
raw data file column: 9249889095_H.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1004-111-Y10

description:
raw data file column: 9249889095_G.AVG_Signal
Illumina Human HT-12 BeadArray


title: control_DZ_#1

description: Gene expression data from mouse germinal center B cells

tag: cell type


title: 1002-115-Y8

description:
raw data file: 5392306044_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi


title: 1086-084-Y8

description:
raw data file: 5392306044_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: chronicpsi


title: 0418-171-Y10

description:
raw data file column: 9249889095_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age


title: 2781-227-Y10

description:
raw data file column: 9249889095_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: female


title: 0745-074-Y8

description:
raw data file: 5392306044_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: hispanic


title: 0849-021-Y10

description:
raw data file column: 9249889095_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: black


title: 0283-011-Y8

description:
raw data file: 5392306044_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married


title: 0431-004-Y8

description:
raw data file: 5392306037_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: lnincome


title: 0633-026-Y8

description:
raw data file: 5392306044_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi


title: 0760-194-Y10

description:
raw data file column: 9249889063_L.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke


title: 0863-070-Y8

description:
raw data file: 5392306004_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: alcohol


title: 1165-092-Y8

description:
raw data file: 5392306044_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: cesd


title: 0449-046-Y8

description:
raw data file: 5392306037_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss


title: 0649-060-Y8

description:
raw data file: 5392306037_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: socsupp


title: 1032-166-Y10

description:
raw data file column: 9249889095_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: monocytepct


title: 2270-205-Y8

description:
raw data file: 5392306044_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 1500-113-Y10

description:
raw data file column: 9249889095_F.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0817-061-Y8

description:
raw data file: 5392306037_E.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0648-136-Y10

description:
raw data file column: 9249889095_A.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1658-155-Y8

description:
raw data file: 5392306004_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1287-133-Y8

description:
raw data file: 5392306037_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1768-158-Y8

description:
raw data file: 5392306037_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: P110*_#1

description: Gene expression data from mouse germinal center B cells

tag: cell type


title: 2320-218-Y8

description:
raw data file: 5392306037_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi


title: 1240-212-Y10

description:
raw data file column: 9249889063_J.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi


title: 1073-132-Y10

description:
raw data file column: 9249889063_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age


title: 2629-221-Y10

description:
raw data file column: 9249889063_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: female


title: 1907-196-Y10

description:
raw data file column: 9249889063_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: hispanic


title: 2660-222-Y10

description:
raw data file column: 9249889063_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: black


title: 0769-055-Y10

description:
raw data file column: 9249889063_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: married


title: 2386-215-Y10

description:
raw data file column: 9249889063_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: lnincome


title: 0165-016-Y10

description:
raw data file column: 9249889095_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: bmi


title: 0480-104-Y10

description:
raw data file column: 9249889063_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke


title: 1332-120-Y10

description:
raw data file column: 9249889063_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: alcohol


title: 0640-047-Y8

description:
raw data file: 5392306037_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: cesd


title: 1002-115-Y10

description:
raw data file column: 9249889063_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pss


title: 0090-179-Y8

description:
raw data file: 5392306004_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: socsupp


title: 0818-105-Y8

description:
raw data file: 5392306004_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: monocytepct


title: 1316-100-Y8

description:
raw data file: 5392306004_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 0444-014-Y10

description:
raw data file column: 9249889063_A.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0127-028-Y8

description:
raw data file: 5392306004_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1308-134-Y8

description:
raw data file: 5262667043_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1026-064-Y8

description:
raw data file: 5392306004_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1373-142-Y10

description:
raw data file column: 9249889091_I.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1403-124-Y8

description:
raw data file: 5392306004_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1634-164-Y10

description:
raw data file column: 9249889091_K.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0562-039-Y10

description:
raw data file column: 9249889091_L.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0414-013-Y8

description:
raw data file: 5262667043_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1255-119-Y10

description:
raw data file column: 9249889091_H.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0096-001-Y8

description:
raw data file: 5262667043_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0626-067-Y8

description:
raw data file: 5262667043_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1115-087-Y10

description:
raw data file column: 9249889091_C.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1854-192-Y10

description:
raw data file column: 9249889091_B.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0897-139-Y10

description:
raw data file column: 9249889091_D.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1453-103-Y8

description:
raw data file: 5262667043_C.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0782-094-Y8

description:
raw data file: 5262667043_E.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1425-143-Y8

description:
raw data file: 5262667043_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0549-093-Y10

description:
raw data file column: 9249889091_F.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1660-149-Y10

description:
raw data file column: 9249889091_E.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1528-110-Y10

description:
raw data file column: 9249889091_J.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0309-012-Y10

description:
raw data file column: 9249907065_L.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0978-160-Y7

description:
raw data file: 5370975052_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0557-015-Y10

description:
raw data file column: 9249889091_A.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1712-183-Y8

description:
raw data file: 5262667043_H.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0434-090-Y10

description:
raw data file column: 9249889091_G.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1032-160-Y7

description:
raw data file: 5370975052_E.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0480-104-Y7

description:
raw data file: 5370975052_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0418-171-Y7

description:
raw data file: 5370975052_C.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0760-194-Y7

description:
raw data file: 5370975052_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1327-150-Y10

description:
raw data file column: 9249907065_H.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0295-022-Y10

description:
raw data file column: 9249907065_K.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0843-044-Y10

description:
raw data file column: 9249907065_I.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0763-176-Y10

description:
raw data file column: 9249907065_J.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1357-197-Y7

description:
raw data file: 5370975052_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1340-207-Y10

description:
raw data file column: 9249907065_D.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1453-103-Y10

description:
raw data file column: 9249907065_F.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0929-174-Y7

description:
raw data file: 5392306057_H.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0165-016-Y7

description:
raw data file: 5392306057_E.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1037-203-Y7

description:
raw data file: 5392306057_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0782-094-Y10

description:
raw data file column: 9249907065_A.AVG_Signal
Illumina Human HT-12 BeadArray


title: 2287-217-Y7

description:
raw data file: 5392306057_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1170-075-Y10

description:
raw data file column: 9249907065_E.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0629-077-Y7

description:
raw data file: 5392306043_H.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0833-079-Y7

description:
raw data file: 5392306057_C.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1245-067-Y10

description:
raw data file column: 9249907065_C.AVG_Signal
Illumina Human HT-12 BeadArray


title: 2629-221-Y7

description:
raw data file: 5392306057_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0849-021-Y7

description:
raw data file: 5392306057_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0434-090-Y7

description:
raw data file: 5392306057_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1560-112-Y10

description:
raw data file column: 9249907065_B.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1907-196-Y7

description:
raw data file: 5392306043_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0692-036-Y10

description:
raw data file column: 9249907087_K.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1125-130-Y10

description:
raw data file column: 9249907087_I.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0893-054-Y10

description:
raw data file column: 9249907087_J.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1386-198-Y10

description:
raw data file column: 9249907087_H.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0295-202-Y7

description:
raw data file: 5392306043_E.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0110-034-Y10

description:
raw data file column: 9249907087_L.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1437-156-Y7

description:
raw data file: 5392306043_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0653-063-Y10

description:
raw data file column: 9249907087_G.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1930-187-Y7

description:
raw data file: 5392306043_C.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 2781-227-Y7

description:
raw data file: 5392306043_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 2838-224-Y7

description:
raw data file: 5392306043_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0912-076-Y7

description:
raw data file: 5392306041_E.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0095-019-Y10

description:
raw data file column: 9249907087_C.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1332-120-Y7

description:
raw data file: 5392306041_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0203-096-Y10

description:
raw data file column: 9249907087_F.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1572-175-Y10

description:
raw data file column: 9249907087_E.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1660-149-Y7

description:
raw data file: 5392306041_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0843-044-Y7

description:
raw data file: 5392306041_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1316-100-Y10

description:
raw data file column: 9249907087_A.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1240-212-Y7

description:
raw data file: 5392306043_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1373-142-Y7

description:
raw data file: 5392306041_C.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0780-069-Y10

description:
raw data file column: 9249907087_D.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0892-109-Y7

description:
raw data file: 5392306041_H.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0763-176-Y7

description:
raw data file: 5392306041_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 40min Control rep12

city: Lausanne

first: Frederic

last: Raymond

address: Campus EPFL - Quartier de l'Innovation

department: Functional Genomics

country: Switzerland

institute: Nestle Institute of Health Sciences

description: replicate 12

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were normalised using quantile normalisation with Illumina GenomeStudio software

source_name: Squeletal muscle

label_protocol: Biotinylated cRNA were prepared with the Ambion TotalPrep kit for Illumina arrays

extract_protocol: RNA was extracted with Beckman-Coulter RNAdvance tissue kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

tag: tissue

value: vastus lateralis

tag: time point

tag: diet

value: Control


title: 40min 5%LEU rep12

description: replicate 12


title: 2350-225-Y10

description:
raw data file column: 9249907059_L.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 1854-192-Y7

description:
raw data file: 5392306039_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 240min 15%LEU rep12

description: replicate 12


title: 40min 15%LEU rep12

description: replicate 12


title: 0199-024-Y10

description:
raw data file column: 9249907087_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 240min 5%LEU rep12

description: replicate 12


title: 0396-005-Y7

description:
raw data file: 5392306039_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 1346-095-Y7

description:
raw data file: 5392306039_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 1086-084-Y7

description:
raw data file: 5392306039_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 0660-045-Y7

description:
raw data file: 5392306039_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 240min Control rep12

description: replicate 12

tag: tissue

tag: time point

tag: diet


title: 1259-098-Y7

description:
raw data file: 5392306039_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 2270-205-Y7

description:
raw data file: 5392306006_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 0692-036-Y7

description:
raw data file: 5392306039_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 1095-108-Y10

description:
raw data file column: 9249907059_J.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 0893-054-Y7

description:
raw data file: 5392306006_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 0030-030-Y10

description:
raw data file column: 9249907059_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid


title: 1115-087-Y7

description:
raw data file: 5392306039_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1606-117-Y7

description:
raw data file: 5392306041_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1086-084-Y10

description:
raw data file column: 9249907059_H.AVG_Signal
Illumina Human HT-12 BeadArray


title: 40min 5%LEU rep11

description: replicate 11

tag: tissue

tag: time point

tag: diet


title: 0619-020-Y7

description:
raw data file: 5392306006_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 0640-047-Y10

description:
raw data file column: 9249907059_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: female

tag: hispanic

tag: black


title: 0633-026-Y10

description:
raw data file column: 9249907059_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 0654-177-Y7

description:
raw data file: 5392306006_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 0110-034-Y7

description:
raw data file: 5392306006_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 0619-020-Y10

description:
raw data file column: 9249907059_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid


title: 2236-226-Y7

description:
raw data file: 5392306006_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 240min 5%LEU rep11

description: replicate 11

tag: tissue

tag: time point

tag: diet


title: 40min 15%LEU rep11

description: replicate 11


title: 240min 15%LEU rep11

description: replicate 11


title: 1170-075-Y7

description:
raw data file: 5392306006_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 0863-070-Y10

description:
raw data file column: 9249907059_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: female

tag: hispanic

tag: black


title: 40min 5%LEU rep10

description: replicate 10


title: 240min Control rep11

description: replicate 11


title: 2270-205-Y10

description:
raw data file column: 9249907059_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 1528-110-Y7

description:
raw data file: 5392306006_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 40min Control rep11

description: replicate 11


title: 0653-063-Y7

description:
raw data file: 5392306005_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 0562-039-Y7

description:
raw data file: 5392306005_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 1386-198-Y7

description:
raw data file: 5392306005_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0780-069-Y7

description:
raw data file: 5392306005_E.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1245-067-Y7

description:
raw data file: 5392306005_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0465-071-Y7

description:
raw data file: 5392306005_C.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0833-079-Y10

description:
raw data file column: 9249907072_L.AVG_Signal
Illumina Human HT-12 BeadArray


title: 40min Control rep10

description: replicate 10

tag: tissue

tag: time point

tag: diet


title: 0283-011-Y7

description:
raw data file: 5392306005_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 1735-206-Y7

description:
raw data file: 5392306005_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 0654-177-Y10

description:
raw data file column: 9249907065_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 1026-064-Y10

description:
raw data file column: 9249907059_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 0782-094-Y7

description:
raw data file: 5384103023_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 0431-004-Y10

description:
raw data file column: 9249907059_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid


title: 1560-112-Y7

description:
raw data file: 5384103023_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0090-179-Y10

description:
raw data file column: 9249907072_H.AVG_Signal
Illumina Human HT-12 BeadArray


title: 0449-046-Y7

description:
raw data file: 5384103023_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0090-174-Y7

description:
raw data file: 5384103023_D.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 240min 15%LEU rep10

description: replicate 10

tag: tissue

tag: time point

tag: diet


title: 0818-105-Y10

description:
raw data file column: 9249907072_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 1572-175-Y7

description:
raw data file: 5384103023_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 1658-155-Y7

description:
raw data file: 5384103023_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 0769-055-Y7

description:
raw data file: 5384103023_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 1403-124-Y7

description:
raw data file: 5384103023_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 1828-173-Y10

description:
raw data file column: 9249907072_J.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid


title: 40min 15%LEU rep10

description: replicate 10

tag: tissue

tag: time point

tag: diet


title: 1435-140-Y10

description:
raw data file column: 9249907072_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 240min 5%LEU rep10

description: replicate 10


title: 0649-060-Y10

description:
raw data file column: 9249907072_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: female

tag: hispanic

tag: black


title: 2287-217-Y5

description:
raw data file column: 5384103019_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 0617-144-Y5

description:
raw data file column: 5384103009_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 1287-133-Y10

description:
raw data file column: 9249907072_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: Control

description:
raw data file column: 5384103009_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 240min Control rep10

description: replicate 10

tag: tissue

tag: time point

tag: diet


title: 40min Control rep9

description: replicate 9


title: 0283-011-Y10

description:
raw data file column: 9249907072_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 40min 5%LEU rep9

description: replicate 9


title: 40min 15%LEU rep9

description: replicate 9


title: 1907-196-Y5

description:
raw data file column: 5384103019_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 1555-157-Y5

description:
raw data file column: 5384103009_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 1308-134-Y10

description:
raw data file column: 9249907072_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 1037-203-Y5

description:
raw data file column: 5384103009_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 1584-141-Y5

description:
raw data file column: 5384103009_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 240min 15%LEU rep9

description: replicate 9

tag: tissue

tag: time point

tag: diet


title: 1078-072-Y10

description:
raw data file column: 9249907059_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 1606-117-Y5

description:
raw data file column: 5384103009_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 1993-201-Y5

description:
raw data file column: 5384103009_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 1332-120-Y5

description:
raw data file column: 5384103007_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 2984-231-Y5

description:
raw data file column: 5384103009_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 1346-095-Y10

description:
raw data file column: 9249907072_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid


title: 1930-187-Y5

description:
raw data file column: 5384103007_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0449-046-Y10

description:
raw data file column: 9249907072_A.AVG_Signal
Illumina Human HT-12 BeadArray


title: 240min Control rep9

description: replicate 9

tag: tissue

tag: time point

tag: diet


title: 40min 5%LEU rep8

description: replicate 8


title: 0760-194-Y5

description:
raw data file column: 5384103007_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 40min Control rep8

description: replicate 8


title: 2270-205-Y5

description:
raw data file column: 5384103007_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 0607-040-Y5

description:
raw data file column: 5384103007_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 1768-158-Y10

description:
raw data file column: 9249907074_L.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 2320-218-Y10

description:
raw data file column: 9249907072_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 0998-188-Y5

description:
raw data file column: 5384103007_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 0127-028-Y10

description:
raw data file column: 9249907074_K.AVG_Signal
Illumina Human HT-12 BeadArray


title: 2781-227-Y5

description:
raw data file column: 5384103007_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1437-156-Y5

description:
raw data file column: 5384103007_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1608-148-Y5

description:
raw data file column: 5384103006_H.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1712-183-Y10

description:
raw data file column: 9249907074_J.AVG_Signal
Illumina Human HT-12 BeadArray


title: 240min 15%LEU rep8

description: replicate 8

tag: tissue

tag: time point

tag: diet


title: 40min 15%LEU rep8

description: replicate 8


title: 240min 5%LEU rep8

description: replicate 8


title: 240min 5%LEU rep9

description: replicate 9


title: 240min Control rep8

description: replicate 8


title: 1854-192-Y5

description:
raw data file column: 5384103006_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 1403-124-Y10

description:
raw data file column: 9249907074_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: female

tag: hispanic

tag: black


title: 0763-176-Y5

description:
raw data file column: 5384103006_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 1032-166-Y5

description:
raw data file column: 5384103006_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 0817-061-Y10

description:
raw data file column: 9249907074_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 1115-087-Y5

description:
raw data file column: 5384103006_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 40min 15%LEU rep7

description: replicate 7

tag: tissue

tag: time point

tag: diet


title: 0653-063-Y5

description:
raw data file column: 5384103006_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 1512-147-Y5

description:
raw data file column: 5384103006_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 0405-128-Y5

description:
raw data file column: 5384103021_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 1073-132-Y5

description:
raw data file column: 5384103006_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 2294-204-Y10

description:
raw data file column: 9249907074_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 0966-184-Y10

description:
raw data file column: 9249907074_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid


title: 1259-098-Y5

description:
raw data file column: 5384103021_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1658-155-Y10

description:
raw data file column: 9249907074_G.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1425-143-Y10

description:
raw data file column: 9249907074_C.AVG_Signal
Illumina Human HT-12 BeadArray


title: 240min 5%LEU rep7

description: replicate 7

tag: tissue

tag: time point

tag: diet


title: 1373-142-Y5

description:
raw data file column: 5384103021_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: age


title: 1003-129-Y5

description:
raw data file column: 5384103021_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 1357-197-Y5

description:
raw data file column: 5384103021_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome

tag: bmi


title: 40min 5%LEU rep7

description: replicate 7


title: 0557-015-Y5

description:
raw data file column: 5384103021_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 40min Control rep7

description: replicate 7


title: 2678-230-Y5

description:
raw data file column: 5384103021_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pss

tag: socsupp

tag: monocytepct


title: 240min 15%LEU rep7

description: replicate 7

tag: tissue

tag: time point


title: 2236-226-Y5

description:
raw data file column: 5384103021_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi


title: 40min 5%LEU rep6

description: replicate 6

tag: diet


title: 0163-050-Y10

description:
raw data file column: 9249907074_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi

tag: age

tag: female


title: 1255-119-Y5

description:
raw data file column: 5384103003_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: hispanic

tag: black

tag: married


title: 40min 15%LEU rep6

description: replicate 6


title: 240min Control rep7

description: replicate 7


title: 0414-013-Y10

description:
raw data file column: 9249907074_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: lnincome

tag: bmi

tag: smoke


title: 0626-027-Y10

description:
raw data file column: 9249907074_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: alcohol

tag: cesd

tag: pss


title: 1794-163-Y5

description:
raw data file column: 5384103003_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: socsupp

tag: monocytepct


title: 40min Control rep6

description: replicate 6

tag: tissue

tag: time point


title: 0769-055-Y5

description:
raw data file column: 5384103003_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi


title: 1165-092-Y5

description:
raw data file column: 5384103003_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: chronicpsi

tag: age


title: 0843-044-Y5

description:
raw data file column: 5384103003_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic


title: 1106-035-Y5

description:
raw data file column: 5384103003_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married


title: 1354-168-Y5

description:
raw data file column: 5384103003_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: lnincome

tag: bmi


title: 1794-163-Y9

description:
raw data file: 9249907078_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke

tag: alcohol


title: 240min 15%LEU rep6

description: replicate 6

tag: diet


title: 2290-214-Y9

description:
raw data file: 9249907078_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: cesd

tag: pss

tag: socsupp


title: 1340-207-Y5

description:
raw data file column: 5384103030_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: monocytepct


title: 1528-110-Y5

description:
raw data file column: 5384103003_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid


title: 0654-177-Y5

description:
raw data file column: 5384103030_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi


title: 0110-034-Y5

description:
raw data file column: 5384103030_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: chronicpsi


title: 240min 5%LEU rep6

description: replicate 6

tag: tissue

tag: time point


title: 1606-117-Y9

description:
raw data file: 9249907078_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age

tag: female

tag: hispanic


title: 1386-198-Y5

description:
raw data file column: 5384103030_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome


title: 240min Control rep6

description: replicate 6


title: 0165-016-Y9

description:
raw data file: 9249907078_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: bmi

tag: smoke

tag: alcohol


title: 40min 5%LEU rep5

description: replicate 5

tag: diet


title: 40min 15%LEU rep5

description: replicate 5


title: 1327-150-Y5

description:
raw data file column: 5384103030_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: cesd

tag: pss

tag: socsupp


title: 0912-076-Y5

description:
raw data file column: 5384103030_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi

tag: monocytepct


title: 1037-203-Y9

description:
raw data file: 9249907078_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi


title: 0165-016-Y5

description:
raw data file column: 5384103030_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: age


title: 1346-095-Y5

description:
raw data file column: 5384103029_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female


title: 0619-020-Y5

description:
raw data file column: 5384103029_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: hispanic


title: 1004-111-Y9

description:
raw data file: 9249907078_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: black


title: 0480-104-Y9

description:
raw data file: 9249907078_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: married


title: 1572-175-Y5

description:
raw data file column: 5384103030_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: lnincome


title: 0367-017-Y5

description:
raw data file column: 5384103029_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi


title: 240min 5%LEU rep5

description: replicate 5

tag: tissue

tag: time point


title: 1372-102-Y5

description:
raw data file column: 5384103029_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol


title: 1721-127-Y5

description:
raw data file column: 5384103028_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: cesd

tag: pss


title: 1735-206-Y5

description:
raw data file column: 5384103028_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: socsupp


title: 1003-129-Y9

description:
raw data file: 9224522072_L.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: monocytepct


title: 0893-054-Y5

description:
raw data file column: 5384103029_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: chronicpsi

tag: age


title: 0549-093-Y5

description:
raw data file column: 5384103029_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic


title: 0807-078-Y9

description:
raw data file: 9224522072_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: black

tag: married


title: 40min 15%LEU rep4

description: replicate 4

tag: diet


title: 1011-082-Y5

description:
raw data file column: 5384103029_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: lnincome

tag: bmi


title: 240min Control rep5

description: replicate 5

tag: tissue

tag: time point


title: 40min Control rep5

description: replicate 5


title: 2568-220-Y5

description:
raw data file column: 5384103028_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 0849-021-Y9

description:
raw data file: 9224522072_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: pss

tag: socsupp


title: 0760-194-Y9

description:
raw data file: 9224522072_J.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: monocytepct


title: 240min 15%LEU rep5

description: replicate 5


title: 40min 5%LEU rep4

description: replicate 4


title: 40min Control rep4

description: replicate 4


title: 0780-069-Y5

description:
raw data file column: 5384103028_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: age

tag: female

tag: hispanic


title: 1804-170-Y5

description:
raw data file column: 5384103028_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married


title: 0434-090-Y5

description:
raw data file column: 5384103028_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: lnincome

tag: bmi


title: 1560-112-Y5

description:
raw data file column: 5384103028_A.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 240min 5%LEU rep4

description: replicate 4

tag: tissue

tag: time point

tag: diet


title: 0465-071-Y5

description:
raw data file column: 5384103028_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 0418-171-Y9

description:
raw data file: 9224522072_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: pss

tag: socsupp


title: 1323-089-Y9

description:
raw data file: 9224522072_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: monocytepct


title: 240min 15%LEU rep4

description: replicate 4


title: 1078-072-Y5

description:
raw data file column: 5384103018_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: age

tag: female

tag: hispanic


title: 240min Control rep4

description: replicate 4


title: 40min 5%LEU rep3

description: replicate 3


title: 0562-039-Y5

description:
raw data file column: 5384103018_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome


title: 1437-156-Y9

description:
raw data file: 9224522072_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: bmi


title: 2660-222-Y9

description:
raw data file: 9224522072_E.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1002-115-Y9

description:
raw data file: 9224522072_C.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1828-173-Y5

description:
raw data file column: 5384103029_C.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 40min 15%LEU rep3

description: replicate 3

tag: tissue

tag: time point

tag: diet


title: 0562-039-Y9

description:
raw data file: 9224522072_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 0444-014-Y5

description:
raw data file column: 5384103018_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: pss

tag: socsupp


title: 0203-096-Y5

description:
raw data file column: 5384103018_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: monocytepct


title: 0088-118-Y5

description:
raw data file column: 5384103017_F.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: age

tag: female

tag: hispanic


title: 40min Control rep3

description: replicate 3


title: 0633-020-Y5

description:
raw data file column: 5384103017_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome


title: 0629-077-Y5

description:
raw data file column: 5384103018_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi


title: 240min Control rep3

description: replicate 3

tag: tissue

tag: time point

tag: diet


title: 0090-179-Y5

description:
raw data file column: 5384103018_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 0480-104-Y5

description:
raw data file column: 5384103017_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: pss

tag: socsupp


title: 1245-067-Y5

description:
raw data file column: 5384103018_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: monocytepct


title: 240min 5%LEU rep3

description: replicate 3


title: 0434-090-Y9

description:
raw data file: 9224522072_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age

tag: female

tag: hispanic


title: 1768-158-Y5

description:
raw data file column: 5384103013_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome


title: 1105-033-Y9

description:
raw data file: 9224522063_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: bmi


title: 1403-124-Y5

description:
raw data file column: 5384103013_G.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 1930-187-Y9

description:
raw data file: 9224522072_D.AVG_Signal
Illumina Human HT-12 BeadArray


title: 40min Control rep2

description: replicate 2

tag: tissue

tag: time point

tag: diet


title: 1086-084-Y5

description:
raw data file column: 5384103013_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 0127-028-Y5

description:
raw data file column: 5384103017_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: pss

tag: socsupp


title: 1002-115-Y5

description:
raw data file column: 5384103013_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: monocytepct


title: 0818-105-Y5

description:
raw data file column: 5384103018_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: age

tag: female

tag: hispanic


title: 1323-089-Y5

description:
raw data file column: 5384103013_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome


title: 0745-074-Y5

description:
raw data file column: 5384103017_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi


title: 0267-018-Y5

description:
raw data file column: 5384103013_B.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 40min 15%LEU rep2

description: replicate 2

tag: tissue

tag: time point

tag: diet


title: 240min 5%LEU rep2

description: replicate 2


title: 1500-113-Y9

description:
raw data file: 9224522063_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 1032-166-Y9

description:
raw data file: 9224522063_L.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: pss

tag: socsupp


title: 240min 15%LEU rep3

description: replicate 3


title: 0833-079-Y5

description:
raw data file column: 5384103017_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: chronicpsi

tag: monocytepct


title: 0295-202-Y9

description:
raw data file: 9224522063_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age

tag: female

tag: hispanic


title: 0843-044-Y9

description:
raw data file: 9224522063_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: black

tag: married

tag: lnincome


title: 1658-155-Y5

description:
raw data file column: 5384103017_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi


title: 1073-132-Y9

description:
raw data file: 9224522063_J.AVG_Signal
Illumina Human HT-12 BeadArray


title: 1425-143-Y5

description:
raw data file column: 5384103027_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 0698-037-Y5

description:
raw data file column: 5384103013_F.AVG_Signal
Illumina Human Ref-8 BeadArray


title: 240min Control rep2

description: replicate 2

tag: tissue

tag: time point

tag: diet


title: 40min 5%LEU rep1

description: replicate 1


title: 40min 5%LEU rep2

description: replicate 2


title: 0817-061-Y5

description:
raw data file column: 5384103017_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: smoke

tag: alcohol

tag: cesd


title: 1332-120-Y9

description:
raw data file: 9224522063_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: pss

tag: socsupp


title: 1011-082-Y9

description:
raw data file: 9224522063_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: monocytepct


title: 2781-227-Y9

description:
raw data file: 9249907078_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age

tag: female

tag: hispanic


title: 1308-073-Y5

description:
raw data file column: 5384103013_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: black

tag: married

tag: lnincome


title: 40min 15%LEU rep1

description: replicate 1

tag: tissue

tag: time point


title: 1240-212-Y5

description:
raw data file column: 5384103027_A.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi

tag: smoke


title: 240min 15%LEU rep2

description: replicate 2

tag: diet


title: 0792-041-Y5

description:
raw data file column: 5384103027_G.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: alcohol

tag: cesd


title: 1453-103-Y5

description:
raw data file column: 5384103027_H.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: psi

tag: pss

tag: socsupp


title: 240min 5%LEU rep1

description: replicate 1


title: 240min 15%LEU rep1

description: replicate 1


title: 0309-012-Y9

description:
raw data file: 9224523006_L.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi

tag: age

tag: monocytepct


title: 0096-001-Y5

description:
raw data file column: 5384103027_C.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: female

tag: hispanic

tag: black


title: 1561-131-Y5

description:
raw data file column: 5384103027_B.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: married

tag: lnincome


title: 0414-013-Y5

description:
raw data file column: 5384103027_E.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: bmi


title: 0763-176-Y9

description:
raw data file: 9224522063_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: smoke


title: 40min Control rep1

description: replicate 1

tag: tissue

tag: time point

tag: diet


title: BC1_SASP REP 1

city: New Orleans

first: Zhiqiang

last: Qin

state: LA

address: 1700 Tulane Ave

institute: LSUHSC-NO

hyb_protocol: Hybridization using standard hybridization protocols from Illumina

scan_protocol: Standard Illumina protocols for HumanHT-12 chip v4.0 from Illumina using the Illumina BeadArray Reader

data_processing: The data were normalised using the cubic spline algorithm (GenomeStudio) and background removed with the GenomeStudio's Detection P-value algorithm

source_name: Human Placental Vein

label_protocol: cRNA was labeled with the TargetAmp Nano Labeling kit for Illumina Expression BeadChip (Epicentre Catalog Number TAN07924)

growth_protocol: The cells were maintained in complete RPMI 1640 medium (ATCC) supplemented with 20% FBS. All cells were cultured at 37°C in 5% CO2. All experiments were carried out using cells harvested at low (< 20) passages

extract_protocol: RNA was extracted using  RNeasy Mini kit (Qiagen) including the DNAseI treatment

treatment_protocol: The cells were treated with 0.5 mM SASP for 48 h

tag: cell line

tag: cell type

value: primary effusion lymphoma (PEL)

tag: treatment

value: SASP-treated


title: 0626-027-Y5

description:
raw data file column: 5384103027_D.AVG_Signal
Illumina Human Ref-8 BeadArray

tag: pid

tag: psi

tag: alcohol

tag: cesd

tag: pss

tag: socsupp


title: 1373-142-Y9

description:
raw data file: 9224522063_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi

tag: age

tag: female

tag: hispanic

tag: black

tag: monocytepct


title: BCP1_SASP REP 2


title: 1327-150-Y9

description:
raw data file: 9224522063_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: 1907-196-Y9

description:
raw data file: 9224523006_I.AVG_Signal
Illumina Human HT-12 BeadArray


title: BC1_SASP REP 2

tag: cell line

tag: cell type

tag: treatment


title: BCBL1_SASP REP 2


title: BCBL1_Ctrl REP 1


title: 0892-109-Y9

description:
raw data file: 9224522063_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: alcohol


title: 1528-110-Y9

description:
raw data file: 9224523006_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: cesd

tag: pss

tag: socsupp


title: 1560-112-Y9

description:
raw data file: 9224523006_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi

tag: age

tag: female


title: 240min Control rep1

description: replicate 1

tag: tissue

tag: time point

tag: diet


title: shRNA2_T65_3

city: Oslo

first: Biljana

last: Stangeland

address: Sognsvannsveien 20

department: Institute of Surgical Research

country: Norway

institute: Oslo University Hospital

description: replicate 3

data_processing: The data were normalised using quantile normalisation with IlluminaGUI in R and  J-Express software (Molmine, Bergen, Norway).  Quantile normalisation makes different arrays comparable by making sure that the distribution of intensities are the same across arrays. The normalisation distribution is chosen by averaging each quantile across chips.

source_name: glioblastoma stem like cells

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

extract_protocol: RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

value: glioblastoma stem-like cell line T08

tag: passage number

value: shRNA construct 2


title: 1115-087-Y9

description:
raw data file: 9224523006_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: hispanic

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke

tag: monocytepct


title: BC1_Ctrl REP 1

tag: cell line

tag: cell type

tag: treatment


title: 0549-093-Y9

description:
raw data file: 9224523006_J.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: alcohol

tag: cesd

tag: pss

tag: socsupp


title: BC1_Ctrl REP 2


title: 1634-164-Y9

description:
raw data file: 9224523006_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age

tag: female

tag: hispanic


title: BCP1_SASP REP 1


title: 1240-212-Y9

description:
raw data file: 9224523006_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: black

tag: married

tag: lnincome


title: 0648-136-Y9

description:
raw data file: 9224523006_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: bmi

tag: smoke

tag: monocytepct


title: BCP1_Ctrl REP 2

tag: cell line

tag: cell type

tag: treatment


title: shRNA2_T65_4

description: replicate 4

tag: passage number


title: Whole_Blood_PNA_3044

city: Aurora

first: Nicholas

last: Walter

state: Colorado

address: 12700 East 19th Avenue

institute: University of Colorado

description: Test

hyb_protocol: Following fragmentation, cRNA were hybridized for 16-18 hours at 48C on GeneChip HuGene 1.1 ST Arrays. GeneChips were washed and stained on the Affymetrix GeneTitan instrument.

scan_protocol: Arrays were scanned using the Affymetrix GeneTitan instrument.

data_processing: Expression data were normalized via Robust Multichip Average, log-transformed and adjusted for batch effect

source_name: Whole blood collected in PAXgene tubes from PNA patient

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 150 ng total RNA using the Affymetrix GeneChip WT Terminal Labeling Kit.

extract_protocol: Whole blood from US patients was collected in PAXGene tubes according to manufacturer's instructions. Total RNA extraction was performed according to the manufacturer's (Qiagen) instructions.

tag: tissue

value: whole blood

tag: Sex

value: Male

tag: clinical group

value: PNA

tag: race

value: Latino

tag: birthcountry

value: USA

tag: diabetes

value: no

tag: current smoker

value: yes

tag: bcg


title: shRNA1_T65_1

description: replicate 1

value: glioblastoma stem-like cell line T65

value: shRNA construct 1


title: BCP1_Ctrl REP 1


title: Whole_Blood_PNA_3043

description: Test

value: Female

value: White

tag: age


title: shRNA1_T65_2

description: replicate 2


title: BCBL1_Ctrl REP 2


title: T65_NS_1

description: replicate 1

value: Non-silencing construct


title: 1660-149-Y9

description:
raw data file: 9224523006_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: female

tag: hispanic

tag: black

tag: married

tag: lnincome

tag: alcohol

tag: cesd

tag: pss

tag: socsupp


title: shRNA2_T65_2

description: replicate 2

tag: cell type

tag: passage number

tag: treatment


title: shRNA1_T65_4

description: replicate 4


title: shRNA1_T65_3

description: replicate 3


title: BCBL1_SASP REP 1

tag: cell line


title: shRNA2_T65_1

description: replicate 1


title: Whole_Blood_PNA_3046

description: Training

tag: tissue

tag: Sex

tag: clinical group

tag: race

tag: age

tag: birthcountry

value: Mexico

tag: diabetes

tag: current smoker

tag: bcg


title: Whole_Blood_PNA_3039

description: Training

value: Black


title: Whole_Blood_PNA_3042

description: Test


title: 0692-036-Y9

description:
raw data file: 9224522095_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: female

tag: hispanic

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke

tag: alcohol

tag: monocytepct


title: Whole_Blood_PNA_3038

description: Test

tag: tissue

tag: Sex

tag: clinical group

tag: race

tag: age


title: MCF-10A_ERYAP2SA_4OHT6h_rep1

city: Cambridge

first: Tackhoon

last: Kim

state: Massachusetts

address: 500 Technology Square, NE47-221

institute: MIT

description: replicate 1

data_processing: The data were normalised using quantile normalisation with geWorkbench 2.3.0

source_name: ERT2-YAP2SA expressing cell 4-OHT treated for 6 hours

label_protocol: Biotin lableing using standard protocol from Illumina TotalPrep RNA Amplification Kit (Ambion, #AMIL1791)

growth_protocol: MCF-10A cells were grown in standard conditions described in Debnath J. et. al., Methods, 2003.

extract_protocol: total RNA was extracted with RiboEx (GeneAll Inc.).

treatment_protocol: 1mM 4-OHT in ethanol was added directly to the cells. Cells are incubated at 37C, 5% CO2 for 2 or 6 hours.

tag: cell line

value: Caucasian

value: female

value: mammary epithelial cell, immortalized


title: 0110-034-Y9

description:
raw data file: 9224523006_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: cesd

tag: pss

tag: socsupp


title: MCF-10A_ERYAP2SA_EtOH_rep2

description: replicate 2

source_name: ERT2-YAP2SA expressing cell EtOH treated


title: MCF-10A_ER_4OHT2h_rep2

description: replicate 2

source_name: control cell 4-OHT treated for 2 hours


title: T65_NS_3

description: replicate 3

tag: cell type

tag: passage number

tag: treatment


title: MCF-10A_ERYAP2SA_4OHT2h_rep1

description: replicate 1

source_name: ERT2-YAP2SA expressing cell 4-OHT treated for 2 hours


title: T65_NS_4

description: replicate 4


title: MCF-10A_ERYAP2SA_4OHT2h_rep2

description: replicate 2


title: 1170-075-Y9

description:
raw data file: 9224523006_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi

tag: female

tag: hispanic

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: T65_NS_2

description: replicate 2


title: MCF-10A_ERYAP2SA_4OHT6h_rep2

description: replicate 2

tag: cell line

tag: race

tag: Sex

tag: tissue


title: MCF-10A_ER_4OHT6h_rep1

description: replicate 1

source_name: control cell 4-OHT treated for 6 hours


title: Whole_Blood_PNA_3040

description: Training

value: whole blood

tag: clinical group

tag: age

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg

value: unknown


title: Whole_Blood_PNA_3041

description: Training

value: PNA


title: 0095-019-Y9

description:
raw data file: 9224522095_J.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: female

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: 0893-054-Y9

description:
raw data file: 9224522095_L.AVG_Signal
Illumina Human HT-12 BeadArray

tag: hispanic

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: 1340-207-Y9

description:
raw data file: 9224522095_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age


title: MCF-10A_ER_4OHT6h_rep2

description: replicate 2

tag: cell line

tag: race

tag: Sex

tag: tissue


title: MCF-10A_ER_EtOH_rep2

description: replicate 2

source_name: control cell EtOH treated


title: Whole_Blood_PNA_3034

description: Training

value: Male

tag: clinical group

value: Latino

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: MCF-10A_ER_EtOH_rep1

description: replicate 1


title: PTTGKO rep-3

first: Yunguang

last: Tong

address: 8700 Beverly BLVD

institute: Cedars-Sinai Medical Center

description:
replicate 3
SAMPLE 6

data_processing: Data was quantile normalized and log2 transformed using beadarray bioconductor package in R

growth_protocol: Standard ATCC culture condition

extract_protocol: RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

treatment_protocol: PTTG1 was knockout in HCT116 cells using homologous recombination

tag: genotype

value: PTTG KO


title: MCF-10A_ERYAP2SA_EtOH_rep1

description: replicate 1


title: MCF-10A_ER_4OHT2h_rep1

description: replicate 1


title: Whole_Blood_PNA_3032

description: Training

value: USA

value: no


title: 0780-069-Y9

description:
raw data file: 9224522095_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: female

tag: hispanic

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: WT rep-1

description:
replicate 1
SAMPLE 1

value: WT

tag: cell line


title: Whole_Blood_PNA_3033

description: Test

tag: tissue

tag: Sex

value: Female

tag: clinical group

tag: race

tag: age

value: yes


title: WT rep-3

description:
replicate 3
SAMPLE 3

tag: genotype


title: WT rep-2

description:
replicate 2
SAMPLE 2


title: 0619-020-Y9

description:
raw data file: 9224522095_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: 0654-177-Y9

description:
raw data file: 9224522095_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: female

tag: hispanic

tag: alcohol

tag: cesd


title: Whole_Blood_PNA_3035

description: Training

tag: tissue

tag: Sex

value: Other

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: 1255-119-Y9

description:
raw data file: 9224522095_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: age

tag: black

tag: pss

tag: socsupp

tag: monocytepct


title: PTTGKO rep-1

description:
replicate 1
SAMPLE 4

tag: genotype

tag: cell line


title: PTTGKO rep-2

description:
replicate 2
SAMPLE 5


title: 1078-072-Y9

description:
raw data file: 9224522095_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: female

tag: hispanic

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: Whole_Blood_PNA_3037

description: Training

tag: tissue

tag: Sex

tag: clinical group

tag: race

tag: birthcountry

value: Mexico

tag: diabetes

tag: current smoker

tag: bcg


title: 1386-198-Y9

description:
raw data file: 9224522095_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: age

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: 1572-175-Y9

description:
raw data file: 9224522095_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: female

tag: hispanic

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: Moderate Risk_560-138951

city: Durham

first: Deborah

middle: A

last: Lewis

state: NC

address: 201 Trent Dr

institute: Duke University Medical Center

data_processing: A comprehensive quality control process was performed on all arrays using the lumi package (version 2.6.0) in Bioconductor in the R environment  (version 2.14.0) for statistical computing.  Quality of the raw data was assessed using the percent of probes present, MA plots, boxplots of the expression distribution, and heatmaps to visualize the correlation between samples.  Samples in which the percent of probes present was 15% or less were excluded. The lumi package was used to make background corrections, log-transform expression values, and carry out quantile normalization.

source_name: Moderate Risk_whole blood

label_protocol: RNA was amplified and the cRNA was biotinylated using the Ambion Illumina TotalPrep RNA Amplification Kit (Life Technologies, Carlsbad, CA).

extract_protocol: Total RNA was isolated from whole blood drawn into PAXgene tubes using the PAXgene Blood RNA kit (PreAnalytiX; Qiagen GmbH-USA).  The quality and quantity of the RNA was confirmed using the Nanodrop 1000 Spectrophotomer (Thermo Fisher Scientific, Wilmington, DE) and by RT PCR.

tag: phenotype/group

value: Moderate Risk

tag: tissue


title: Whole_Blood_PNA_3027

description: Test

tag: Sex

tag: clinical group

tag: race

value: White

tag: age

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: Moderate Risk_560-138496


title: Moderate Risk_560-138516


title: Moderate Risk_560-138465


title: Moderate Risk_560-138447


title: Whole_Blood_PNA_3030

description: Training

value: Black


title: Whole_Blood_PNA_3031

description: Test


title: 0203-096-Y9

description:
raw data file: 9224522074_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Moderate Risk_560-133380

tag: phenotype/group

tag: tissue


title: Moderate Risk_560-133383


title: Moderate Risk_560-138497


title: Moderate Risk_560-138507


title: Moderate Risk_560-138942


title: Moderate Risk_560-138519


title: Moderate Risk_560-133164


title: 1245-067-Y9

description:
raw data file: 9224522095_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: female

tag: hispanic

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: Whole_Blood_PNA_3029

description: Test

tag: Sex

tag: clinical group

tag: race

tag: age

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: Whole_Blood_PNA_3028

description: Test


title: Moderate Risk_560-133419


title: Whole_Blood_PNA_3023

description: Training

value: Sierra Leone


title: 1316-100-Y9

description:
raw data file: 9224522074_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Moderate Risk_560-133213

tag: phenotype/group

tag: tissue

value: whole blood


title: Moderate Risk_560-133219


title: Whole_Blood_PNA_3021

description: Test

tag: Sex

tag: clinical group

tag: race

value: unknown


title: 1854-192-Y9

description:
raw data file: 9224522074_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age

tag: female

tag: hispanic

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: Moderate Risk_285-02620


title: Moderate Risk_560-129671


title: Whole_Blood_PNA_3018

description: Test

value: PNA

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: Whole_Blood_PNA_3025

description: Training

value: Male


title: 2270-205-Y9

description:
raw data file: 9224522074_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: chronicpsi

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: 0653-063-Y9

description:
raw data file: 9224522074_L.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age

tag: female

tag: hispanic

tag: married


title: Moderate Risk_285-02485

tag: phenotype/group

tag: tissue


title: Moderate Risk_285-02566


title: 0283-011-Y9

description:
raw data file: 9224522074_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: lnincome

tag: bmi

tag: smoke


title: 1095-108-Y9

description:
raw data file: 9224522074_J.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi


title: Whole_Blood_PNA_3026

description: Training

tag: Sex

tag: clinical group

tag: race

value: Asian

tag: birthcountry

value: Vietnam

tag: diabetes

tag: current smoker

tag: bcg


title: Whole_Blood_PNA_3024

description: Training

value: Latino

tag: age


title: Whole_Blood_PNA_3017

description: Training

value: El Salvador

value: no


title: Moderate Risk_285-01933


title: Moderate Risk_560-129841


title: Moderate Risk_285-02562


title: 2350-225-Y9

description:
raw data file: 9224522074_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi

tag: female

tag: hispanic

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Whole_Blood_PNA_3014

description: Test

tag: tissue

tag: Sex

value: Female


title: Moderate Risk_560-128308

tag: phenotype/group


title: Moderate Risk_262-00742


title: Moderate Risk_285-00990


title: 1828-173-Y9

description:
raw data file: 9224522074_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: psi

tag: married

tag: lnincome

tag: bmi

tag: smoke

value: Missing


title: Moderate Risk_285-00970


title: 0863-070-Y9

description:
raw data file: 9224522074_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi

tag: age

tag: female


title: Whole_Blood_PNA_3015

description: Training

tag: clinical group

tag: race

tag: birthcountry

value: USA

tag: diabetes

tag: current smoker

value: yes

tag: bcg


title: Whole_Blood_PNA_3012

description: Training

tag: tissue

tag: Sex

value: Other


title: 0782-094-Y9

description:
raw data file: 9224522076_L.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: hispanic

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Moderate Risk_262-00708

tag: phenotype/group

value: Moderate Risk


title: Moderate Risk_262-00718


title: Moderate Risk_262-00342


title: Whole_Blood_PNA_3008

description: Training

tag: clinical group

tag: age


title: 1086-084-Y9

description:
raw data file: 9224522074_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: female

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: Whole_Blood_PNA_3011

description: Training

tag: tissue

tag: Sex

tag: race

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: 0633-036-Y9

description:
raw data file: 9224522076_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: hispanic

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Whole_Blood_PNA_3010

description: Training

tag: clinical group

value: White

tag: age


title: Whole_Blood_PNA_3013

description: Training

tag: tissue


title: 0978-160-Y9

description:
raw data file: 9224522074_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: female

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: 0199-024-Y9

description:
raw data file: 9224522076_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: hispanic


title: Whole_Blood_PNA_3007

description: Training

tag: Sex

tag: race

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: 0818-105-Y9

description:
raw data file: 9224522076_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: age

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: 2320-218-Y9

description:
raw data file: 9224522076_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: chronicpsi

tag: female

tag: married

tag: lnincome

tag: bmi


title: 0649-060-Y9

description:
raw data file: 9224522076_J.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: hispanic

tag: smoke


title: Whole_Blood_PNA_3006

description: Test

tag: tissue

tag: Sex

tag: clinical group

tag: race

tag: birthcountry

value: Mongolia

tag: diabetes

tag: current smoker

tag: bcg


title: 0030-030-Y9

description:
raw data file: 9224522076_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: age

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Moderate Risk_560-105244

tag: phenotype/group

value: whole blood


title: Whole_Blood_PNA_3005

description: Test

tag: tissue

value: unknown


title: Whole_Blood_PNA_3002

description: Training

tag: Sex

value: PNA

value: Mexico


title: Whole_Blood_PNA_3003

description: Test

value: Male

tag: clinical group


title: Moderate Risk_262-00749


title: 1287-133-Y9

description:
raw data file: 9224522076_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: chronicpsi

tag: female

tag: hispanic

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: Moderate Risk_054-00590


title: Whole_Blood_PNA_3000

description: Training

tag: race

tag: age

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: Whole_Blood_LTBI_2109

description: Test

source_name: Whole blood collected in PAXgene tubes from LTBI patient

tag: tissue

value: LTBI


title: 1768-158-Y9

description:
raw data file: 9224522076_B.AVG_Signal
Illumina Human HT-12 BeadArray

source_name: PBMC

tag: psi

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Whole_Blood_LTBI_2105

description: Test

tag: Sex

tag: clinical group

value: Latino


title: 0817-061-Y9

description:
raw data file: 9224522076_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: chronicpsi

tag: female

tag: hispanic

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: Whole_Blood_LTBI_2108

description: Training

tag: tissue

tag: race

tag: age

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: 1658-155-Y9

description:
raw data file: 9224522076_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: black

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Whole_Blood_PNA_3001

description: Training

tag: Sex

tag: clinical group


title: 0747-043-Y9

description:
raw data file: 9234549012_I.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: chronicpsi

tag: female

tag: hispanic

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: 1453-103-Y9

description:
raw data file: 9234549012_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: age


title: 1308-134-Y9

description:
raw data file: 9224522076_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: black

tag: alcohol


title: Whole_Blood_LTBI_2104

description: Training

tag: tissue

tag: race

tag: birthcountry

tag: diabetes

tag: current smoker

tag: bcg


title: Whole_Blood_LTBI_2047

description: Training

tag: Sex

tag: clinical group

value: Black

value: Ghana


title: 0127-028-Y9

description:
raw data file: 9234549012_F.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: chronicpsi

tag: female

tag: hispanic

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Whole_Blood_LTBI_2048

description: Test

value: Female

value: Asian

tag: age

value: Vietnam

value: no


title: 0163-050-Y9

description:
raw data file: 9234549012_J.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke

tag: alcohol


title: Whole_Blood_LTBI_2103

description: Training

tag: tissue

tag: Sex

tag: clinical group

tag: race

tag: birthcountry

value: USA

tag: diabetes

tag: current smoker

value: yes

tag: bcg


title: Whole_Blood_LTBI_2102

description: Training

value: Mexico DF


title: 1026-064-Y9

description:
raw data file: 9234549012_G.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: chronicpsi

tag: female

tag: hispanic

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: 0966-184-Y9

description:
raw data file: 9234549012_K.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: age

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke

tag: alcohol


title: Whole_Blood_LTBI_2039

description: Test

tag: tissue

tag: Sex

tag: clinical group

tag: race

tag: birthcountry

value: Nepal

tag: diabetes

tag: current smoker

tag: bcg


title: Whole_Blood_LTBI_2036

description: Training

value: whole blood


title: 1712-183-Y9

description:
raw data file: 9234549012_E.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: chronicpsi

tag: female

tag: hispanic

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Whole_Blood_LTBI_2042

description: Test

value: White

tag: age

value: France


title: Whole_Blood_LTBI_2033

description: Training

tag: tissue

value: Mexico


title: 1435-140-Y9

description:
raw data file: 9234549012_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke

tag: alcohol


title: Whole_Blood_LTBI_2030

description: Training

tag: Sex

tag: clinical group

tag: race

tag: birthcountry

value: China

tag: diabetes

tag: current smoker

tag: bcg


title: Whole_Blood_LTBI_2027

description: Training

value: Male

value: LTBI

value: Ethiopia


title: 0414-013-Y9

description:
raw data file: 9234549012_B.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid

tag: chronicpsi

tag: female

tag: hispanic

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: 0626-027-Y9

description:
raw data file: 9234549012_C.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi

tag: age

tag: black

tag: married

tag: lnincome

tag: bmi

tag: smoke


title: Whole_Blood_LTBI_2028

description: Test

tag: tissue

tag: Sex

tag: clinical group

tag: race

tag: birthcountry

tag: diabetes

tag: current smoker

value: unknown


title: Whole_Blood_LTBI_2032

description: Training

value: Other

value: Sudan

tag: bcg


title: Whole_Blood_LTBI_2026

description: Test

value: Female

value: Black


title: RGE01-Y2-37453

description:
raw data file column name: 9224523011_E.AVG_Signal
Illumina Human HT-12 BeadArray

organism: Macaca mulatta

tag: pid

value: ModPSI


title: 1425-143-Y9

description:
raw data file: 9234549012_A.AVG_Signal
Illumina Human HT-12 BeadArray

tag: chronicpsi

tag: female

tag: hispanic

tag: alcohol

tag: cesd

tag: pss

tag: socsupp

tag: monocytepct


title: Whole_Blood_LTBI_2029

description: Training

tag: tissue

value: Asian

tag: age

value: Bhutan

value: no


title: hepatocyte cells:F53

city: Barcelona

first: Juanjo

last: Lozano

address: C/ Rosselló 153

department: Plataforma de Bioinformatica

country: Spain

institute: CIBEREHD

description:
hepatocyte cells:F53
sHEP_F53

hyb_protocol: Standard Affymetrix protocol

scan_protocol: Standard Affymetrix protocol using a Gene chip scanner 3000

data_processing: Data processing cel files were normalized with 'rma' function of the Bioconductor package (v2.4)  in R.3.0.1

source_name: CTC's group: HEP

label_protocol: Standard Affymetrix protocol

extract_protocol: Total RNA was purified from qHSCs, aHSCs and hepatocyte samples using RNeasy MICROKit (QIAGEN GmbH, Hilden, Germany) following a deviation of the standard protocol as recommended by the manufacturer and using 1.5 volumes of 100% ethanol before applying the sample into the column. Total RNA concentration and quality control was assessed using the RNA 6000 pico kit (Agilent, Santa Clara, CA).

tag: cell type

value: hepatocyte cells


title: liver sinusoidal endothelial cells:L8

description:
liver sinusoidal endothelial cells:L8
sLSEC_L8

source_name: CTC's group: LSEC

value: liver sinusoidal endothelial cells


title: RGE01-Y2-37562

description:
raw data file column name: 9224523011_D.AVG_Signal
Illumina Human HT-12 BeadArray

tag: psi


title: RGE01-Y2-36391

description:
raw data file column name: 9224523011_F.AVG_Signal
Illumina Human HT-12 BeadArray


title: Whole_Blood_LTBI_2020

description: Test

value: whole blood

tag: Sex

tag: clinical group

tag: race

tag: birthcountry

value: Burma


title: Whole_Blood_LTBI_2015

description: Training

value: Eritrea

tag: diabetes

tag: current smoker

tag: bcg


title: Whole_Blood_LTBI_2016

description: Training

value: USA

value: yes


title: Whole_Blood_LTBI_2017

description: Training

value: Male

value: LTBI


title: RGE01-Y2-35281

description:
raw data file column name: 9224523011_H.AVG_Signal
Illumina Human HT-12 BeadArray

tag: pid


title: Moderate Risk_285-02360

tag: phenotype/group

value: Moderate Risk


title: RGE01-Y2-37066

description:
raw data file column name: 9224523011_B.AVG_Signal
Illumina Human HT-12 BeadArray

value: LowPSI


title: RGE01-Y2-33775

description:
raw data file column name: 9224523011_A.AVG_Signal
Illumina Human HT-12 BeadArray


title: Whole_Blood_LTBI_2024

description: Training

value: Female

value: Other


title: hepatocyte cells:F45

description:
hepatocyte cells:F45
sHEP_F45


title: liver sinusoidal endothelial cells:L4

description:
liver sinusoidal endothelial cells:L4
sLSEC_L4


title: RGE01-Y2-36733

description:
raw data file column name: 9224522097_L.AVG_Signal
Illumina Human HT-12 BeadArray


title: RGE01-Y2-36612

description:
raw data file column name: 9224523011_C.AVG_Signal
Illumina Human HT-12 BeadArray

value: ModPSI


title: RGE01-Y2-36973

description:
raw data file column name: 9224523011_G.AVG_Signal
Illumina Human HT-12 BeadArray


title: RGE01-Y2-33758

description:
raw data file column name: 9224522097_K.AVG_Signal
Illumina Human HT-12 BeadArray


title: Whole_Blood_LTBI_2013

description: Training

value: Asian

value: Indonesia


title: RGE01-Y2-30291

description:
raw data file column name: 9224522097_I.AVG_Signal
Illumina Human HT-12 BeadArray


title: RGE01-Y2-31538

description:
raw data file column name: 9224522097_J.AVG_Signal
Illumina Human HT-12 BeadArray


title: Whole_Blood_LTBI_2014

description: Training

value: Black

value: no

value: unknown


title: Whole_Blood_LTBI_2010

description: Training

value: whole blood

value: Bhutan


title: Whole_Blood_LTBI_2011

description: Test

value: Burma


title: Quiescent hepatic stellate cells:L8

description:
Quiescent hepatic stellate cells:L8
sQHSC_L8

source_name: CTC's group: QHSC

value: Quiescent hepatic stellate cells


title: Quiescent hepatic stellate cells:L10

description:
Quiescent hepatic stellate cells:L10
sQHSC_L10


title: Quiescent hepatic stellate cells:L4

description:
Quiescent hepatic stellate cells:L4
sQHSC_L4


title: Whole_Blood_LTBI_2008

description: Test

value: yes


title: RGE01-Y2-33981

description:
raw data file column name: 9224522097_F.AVG_Signal
Illumina Human HT-12 BeadArray

value: Missing


title: RGE01-Y2-34713

description:
raw data file column name: 9224522097_D.AVG_Signal
Illumina Human HT-12 BeadArray


title: Whole_Blood_LTBI_2006

description: Training

value: Male

value: LTBI


title: RGE01-Y2-37527

description:
raw data file column name: 9224522097_E.AVG_Signal
Illumina Human HT-12 BeadArray

value: LowPSI


title: RGE01-Y2-36541

description:
raw data file column name: 9224522097_H.AVG_Signal
Illumina Human HT-12 BeadArray

value: HighPSI