title: Serum from subject 6128

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 4199

status: Public on Jun 09 2016

type: RNA

city: Boston

first: Alvin

middle: T.

last: Kho

state: MA

address: 320 Longwood Avenue

department: Informatics Program

country: USA

institute: Boston Children's Hospital

data_processing:
Raw output values in triplets for each sample: Ct on base 2 exponent, Cq confidence Cq_Conf, amplification score Amp_Score. Triplets with any “Undetermined” value, or Cq-Conf<0.8, or Amp_Score<1.24 are disregarded in subsequent analyses.
In the non_normalized.txt, three values are given for each sample: CT values on base 2 exponent. Cq confidence CQ_CONF. Amplification score AMP_SCORE.  Also the following miRBASE identifiers are included;
#MIRBASE_R21_ID = miRBase release 21 July 03, 2014
http://www.mirbase.org/identifier
#MIRBASE_R21_ACCESSION = miRBase release 21 July 03, 2014
http://www.mirbase.org/accession

The sample data table contains CT_QNORM values;
CT_QNORM = quantitative PCR threshold cycle power exponent base 2 CT from Non-Normalized data matrix that pass quality control threshold of AMP_SCORE >1.24 and CQ_CONF >0.80 (otherwise null valued), and then quantile normalized.

label: FAM

molecule: total RNA

organism: Homo sapiens

source_name: CAMP_Blood serum

label_protocol: Not applicable.

extract_protocol: Total RNA from 1 mL of serum from the CAMP participants was isolated using the miRNA isolation kit (Norgen Biotek).  We averaged around 4 ng/ul of total RNA in 20 ul measured by RiboGreen. Isolated RNA was reverse-transcribed and the product was pre-amplified using Megaplex PreAmp Primers and TaqMan PreAmp Master Mix (Applied Biosystems).

value: Female

value: White non-Hispanic

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

value: blood serum


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D11_464016

city: Rockville

first: Mervi

last: Heiskanen

state: MD

address: 9609 Medical Center Drive, 1W378

department: CBIIT

institute: NCI

hyb_protocol: See mage-tab files linked to series entry for additional details

label: biotin

source_name: brain

tag: diseasestate

value: Glioblastoma Multiforme

tag: organismpart

value: Brain

tag: clinicaldiagnosis

value: Untreated primary (De Nova) GBM

tag: Sex

value: Male

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 4181

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_F09_691702

scan_protocol: See mage-tab files linked to series entry for additional details

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site


title: Serum from subject 5002

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 6153

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 6028

tag: camp subject id

tag: age (yrs)


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D11_464016

data_processing: See mage-tab files linked to series entry for additional details

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 7085

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 4143

tag: camp subject id

tag: age (yrs)

tag: burst count

tag: tissue


title: Serum from subject 7307

tag: gender

tag: race


title: Serum from subject 8175

tag: height (cm)

tag: bmi %


title: Serum from subject 2047

tag: bmi

tag: fev1 2 month change


title: Serum from subject 7259

tag: fev1 2 month change % predicted

tag: pc20 change


title: meyer-00180: 5500024035736031208615.C01

label_protocol: See mage-tab files linked to series entry for additional details

tag: diseasestate

value: GLIOBLASTOMA MULTIFORME

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

value: GBM

tag: individual

tag: sample

tag: tissue anatomic site

value: TEMPORAL LOBE

tag: pathologic status

value: MALIGNANT

tag: histologic diagnosis


title: Serum from subject 5236

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: meyer-00180: 5500024035736031208615.F06

extract_protocol: See mage-tab files linked to series entry for additional details

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

value: FRONTAL LOBE


title: Serum from subject 8195

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 7103

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 5258

tag: camp subject id

tag: age (yrs)


title: Serum from subject 3102

tag: gender

tag: race


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B07_516310

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 1182

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 1237

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race


title: Serum from subject 5101

tag: height (cm)

tag: bmi %


title: Serum from subject 7211

tag: bmi

tag: fev1 2 month change


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B10_586230

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 2049

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: meyer-00180: 5500024035100021608462.B09

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_C06_400436

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E11_588222


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E12_588220


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D02_586196


title: Serum from subject 3108

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted


title: Serum from subject 4107

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 2159

tag: camp subject id

tag: age (yrs)


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B05_586204

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 3118

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 4115

tag: camp subject id

tag: age (yrs)

tag: burst count

tag: tissue


title: Serum from subject 1203

tag: gender

tag: race


title: Serum from subject 2956

tag: height (cm)

tag: bmi %


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_G02_588250

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 4085

tag: camp subject id

tag: age (yrs)

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 8101

tag: gender

tag: race

tag: height (cm)

tag: bmi %


title: Serum from subject 4064 replicate 2

tag: camp subject id

tag: age (yrs)


title: Serum from subject 4064 replicate 1

tag: bmi

tag: fev1 2 month change


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_A09_723906

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: 5500024056197041909864.C04

value: NOT SPECIFIED


title: Serum from subject 5228

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 4179

tag: camp subject id

tag: age (yrs)

tag: bmi

tag: fev1 2 month change


title: Serum from subject 5273

tag: gender

tag: race


title: Serum from subject 6152

tag: height (cm)

tag: bmi %


title: Serum from subject 7075

tag: fev1 2 month change % predicted

tag: pc20 change


title: Serum from subject 7265

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C04_298070

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 8298

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B12_516448

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site


title: Serum from subject 8266

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D11_586148

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B02_586214

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site


title: Serum from subject 2979

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 3111 replicate 1

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 3111 replicate 2

tag: camp subject id

tag: age (yrs)


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_G05_691818

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B10_400386


title: Serum from subject 2064

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 2075

tag: camp subject id

tag: age (yrs)

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 6007

tag: gender

tag: race


title: Serum from subject 5001

tag: height (cm)

tag: bmi %


title: Serum from subject 5120

tag: bmi

tag: fev1 2 month change


title: Serum from subject 4278

tag: fev1 2 month change % predicted

tag: pc20 change


title: Serum from subject 4030

tag: pre fvc (liter)

tag: pre fvc % predicted


title: Serum from subject 5177

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 6045

tag: burst count

tag: tissue


title: Serum from subject 6012 replicate 2

tag: camp subject id

tag: age (yrs)


title: Serum from subject 1337

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 6012 replicate 1

tag: gender

tag: race


title: Serum from subject 2990

tag: height (cm)

tag: bmi %


title: Serum from subject 8002

tag: bmi

tag: fev1 2 month change


title: Serum from subject 2926

tag: fev1 2 month change % predicted

tag: pc20 change


title: Serum from subject 6155

tag: pre fvc (liter)

tag: pre fvc % predicted


title: Serum from subject 5049

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 7177

tag: burst count

tag: tissue


title: Serum from subject 8253

tag: camp subject id

tag: age (yrs)


title: Serum from subject 4058

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 8237

tag: gender

tag: race


title: Serum from subject 3197

tag: height (cm)

tag: bmi %


title: PAD-AP4

city: Guangzhou

first: Chen

last: Changhao

address: Department of Urology, Sun Yat-sen Memorial Hospital, 107, W. Yanjiang Road, Yuexiu District, Guangzhou,Guangdong Province, PR China

country: China

institute: Sun Yat-sen Memorial Hospital

hyb_protocol: Bring 3μg of labeled DNA to a total of 133 μl with water. Add the required elements, and take tubes to microarray facility. Incubate 99°C for 5 min. While incubating, load array with 200 μL 1x hybridization buffer and prehybridize array in the oven for 10 min at 45°C, 60rpm. Incubate probe 45°C 5 min. Spin the tubes 5 min. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 and GeneChip Scanner 3000.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip 7G 3000 Scanner.

data_processing: After scanning the probe array, the resulting image data were stored on the hard drive of the GeneChip® Operating Software workstation (GCOS). GCOS applications software was used for data analysis. Normalization methods: Signal chip probe sets all small to large order, and remove the maximum 2%. After a minimum of 2% of the average value of the remaining signal is adjusted to 500 probe sets.

source_name: PC-3, AP4 overexpression

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2003, Affymetrix).

growth_protocol: PC-3 cell lines were cultured in Dulbecco’s modified Eagle’s medium (DMEM) (HyClone) with 10% FBS.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol:
PC-3 cells were transfected with small interfering RNA (siRNA) using Lipofectamine RNAi Max (Life Technologies, CA, USA) according to the manufacturer’s instruction.
PC-3 cells were transfected with AP4 adenovirus, AP4△bHLH adenovirus and empty vector virus.

tag: cell line

tag: cell type

value: prostate cancer cell line

tag: treatment

value: AP4 adenovirus


title: PAD-AP4-bHLH

source_name: PC-3, AP4-delta-bHLH overexpression

value: AP4-delta-bHLH adenovirus


title: Serum from subject 6109

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fvc (liter)


title: Serum from subject 1325

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 4195

tag: camp subject id

tag: age (yrs)

tag: gender

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 7345

tag: race

tag: height (cm)

tag: bmi %


title: si-AP4

source_name: PC-3, AP4 knockdown

tag: cell line

tag: cell type

tag: treatment

value: AP4 siRNA


title: si-NC

source_name: PC-3, control knockdown

value: control siRNA


title: Serum from subject 7024

value: White non-Hispanic

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fvc (liter)


title: Serum from subject 6047

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue

value: blood serum


title: Serum from subject 1141

tag: camp subject id

tag: age (yrs)

tag: gender

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 1344

value: Female

tag: race

tag: height (cm)

tag: bmi %


title: Serum from subject 4078

tag: bmi

tag: fev1 2 month change


title: Serum from subject 4033

tag: fev1 2 month change % predicted

tag: pc20 change


title: Serum from subject 7263

tag: pre fvc (liter)

tag: pre fvc % predicted


title: Serum from subject 4050

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 8181

tag: burst count

tag: tissue


title: Serum from subject 5067 replicate 1

tag: camp subject id

tag: age (yrs)


title: Serum from subject 7150 replicate 2

tag: gender

tag: pre fev1 (liter)


title: Serum from subject 2038

tag: race

tag: pre fev1 % predicted


title: vector

source_name: PC-3, empty vector

tag: cell line

tag: cell type

tag: treatment

value: empty vector virus


title: Serum from subject 5067 replicate 2

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted


title: Serum from subject 7150 replicate 1

tag: pc20 change

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 5111

tag: camp subject id

tag: age (yrs)

tag: gender

tag: burst count

tag: tissue


title: Serum from subject 7101

tag: race

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 3093

tag: height (cm)

tag: bmi %


title: Serum from subject 5074

tag: bmi

tag: fev1 2 month change


title: Serum from subject 7030

tag: fev1 2 month change % predicted

tag: pc20 change


title: Serum from subject 6126 replicate 1

tag: pre fvc (liter)

tag: pre fvc % predicted


title: Serum from subject 6011

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 5135

tag: camp subject id

tag: age (yrs)


title: Serum from subject 6013

tag: gender

tag: burst count


title: Serum from subject 5060

tag: race

tag: tissue


title: Serum from subject 7241

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 4044

tag: height (cm)

tag: bmi %


title: Serum from subject 3061

tag: bmi

tag: fev1 2 month change


title: Serum from subject 2056

tag: fev1 2 month change % predicted

tag: pc20 change


title: Serum from subject 7194

tag: pre fvc (liter)

tag: pre fvc % predicted


title: Serum from subject 5270

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 7110

tag: camp subject id

tag: age (yrs)


title: Serum from subject 8110

tag: gender

tag: burst count


title: Serum from subject 6125

tag: race

tag: tissue


title: Serum from subject 6126 replicate 2

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Patient  60 Infantile hemangioma_midface

city: Seattle

first: Graham

last: Strub

state: WA

address: 1959 NE Pacific St

institute: University of Washington

hyb_protocol: Hybridization mixtures were incubated in a thermocycler at 65 degrees celsius for 12 hours

scan_protocol: Samples were analyzed using a NanoString nCounter Prep Station analysis system

data_processing: Expression data was log transformed, and genes and arrays were centered using the median expression

label: Biotin

source_name: Infantile hemangioma_midface

label_protocol: Reporter probes were diluted in hybridization buffer and added to 100ng of total RNA for each sample

growth_protocol: Tissue samples were collected intra-operatively during resection, immediately frozen in liquid nitrogen, and cryopreserved in a –80 ºC freezer.

extract_protocol: Total RNA was isolated using TriZOL (Life Technologies) according to the manufacturer's instructions for tissue samples

treatment_protocol: No treament

tag: age

value: 24 months


title: Serum from subject 3055 replicate 1

value: Male

tag: height (cm)

tag: bmi %

tag: bmi


title: Serum from subject 4065

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change


title: Serum from subject 6089

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc


title: Patient 448 Infantile hemangioma_lower lip

source_name: Infantile hemangioma_lower lip

value: 48 months


title: Serum from subject 7121 replicate 1

tag: camp subject id

tag: age (yrs)

tag: bronchodilator response %


title: Serum from subject 7121 replicate 2

tag: gender

tag: race

tag: burst count


title: Patient 447 Infantile hemangioma_lower lip

value: 60 months


title: Sertoli cells, 9d, 0.1mM MBP, 3

city: Shanghai

first: Xiaoqin

last: Yin

state: Shanghai

address: No. 355 Luding Road, Shanghai 200062, P.R.China.

department: Shanghai Children’s Hospital

institute: School of medicine, Shanghai Jiao Tong University

description: Gene expression data from 9-day-old rat Sertoli cells treated with 0.1mM MBP.

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: Genechips were scanned on the 3000 7G, an Affymetrix GeneChip scanner

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

organism: Rattus norvegicus

source_name: MBP treated 9-day-old Sertoli cell

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (

growth_protocol: Sertoli cells were isolated and cultured in DMEM/F12 medium.Testes from rats were aseptically removed, decapsulated, and digested into cell suspension. Isolated cells were placed on a tissue cultured dish in DMEM/F12 supplemented with 10% fetal bovine serum.

treatment_protocol: After primary culture for another 24 hours, Sertoli cells were divided into 2 groups: control and 0.1mM MBP. After 24 hours culture, cells were placed on ice and treated with Trizol Reagent.

tag: tissue

value: testis


title: Patient 445 Lymphatic malformation_tongue

source_name: Lymphatic malformation_tongue

tag: age


title: Patient  446 Infantile hemangioma_midface


title: Serum from subject 3055 replicate 2

tag: height (cm)

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Patient 444 Lymphatic malformation_neck

source_name: Lymphatic malformation_neck

value: 84 months


title: Patient 439 Infantile hemangioma_midface


title: Patient 438 Infantile hemangioma_lower lip


title: Patient 444 Lymphatic malformation_tongue


title: Sertoli cells, 9d, 0.1mM MBP, 2


title: Patient 434 Infantile hemangioma_forehead_sample 2

source_name: Infantile hemangioma_forehead

value: 6 months


title: Sertoli cells, 9d, 0.1mM MBP, 1


title: HT-29 cells

city: Niigata

first: yoshikazu

last: mikami

address: 1-757 Asahimatidori, Chuo-ku

department: Division of Microscopic Anatomy

country: Japan

institute: Niigata University Graduate School of Medical and Dental Sciences

hyb_protocol: 600 ng of Cy3-labelled cRNA was fragmented at 60°C for 30 minutes in a reaction volume of 24 μl containing 1μl of 25x Agilent fragmentation buffer and 5μl of 10x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 25μl of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to the microarray (SuperPrint G3 Rat 8x60k ver. 1.0, Agilent Technologies) for 17 hours at 65°C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent Technologies) and 1 minute with 37°C GE Wash buffer 2 (Agilent Technologies), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned immediately after washing on the Agilent Technologies Microarray Scanner.

data_processing: The scanned images were analyzed with Agrent Feature Extention 10.7.3.1 using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities.

source_name: human colorectal adenocarcinoma cell line

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 50 ng totalRNA using the Low Input Quick Amp Labeling kit (Agilent Techologies) according to the manufacturer's instructions.

growth_protocol: Cells were maintained in the growth medium [Minimal Essential Medium (Wako, Tokyo, Japan) containing 10% fetal bovine serum (Japan Bio Serum, Tokyo, Japan) and 1% penicillin-streptomycin (Wako)] at 37°C in an atmosphere containing 5% CO2.

extract_protocol: Total RNA was extracted from each cell type by using NucleoSpin RNA kit (Takara Bio Inc., Kusatsu, Shiga, Japan).

tag: cell line

tag: cell type

value: colorectal adenocarcinoma cells

tag: genotype/variation

value: wild type


title: Patient 434 Infantile hemangioma_forehead_sample 1


title: Patient 425 Normal skin

source_name: Normal skin

value: 216 months


title: Patient 429 Normal skin

value: 15 months


title: Sertoli cells, 9d, 2

description: Gene expression data from 9-day-old rat Sertoli cells.

source_name: 9-day-old Sertoli cell


title: wtCa9-22 cells

source_name: human gingival carcinoma cell line

value: human gingival carcinoma cells


title: Sertoli cells, 0.1μM NP + 0.1mM MBP

source_name: Rat Sertoli cells

growth_protocol: Sertoli cells were isolated and cultured in DMEM/F12 medium. Testes from rats were aseptically removed, decapsulated, and digested into cell suspension. Isolated cells were placed on a tissue cultured dish in DMEM/F12 supplemented with 10% fetal bovine serum.

treatment_protocol: After primary culture for another 24 hours, Sertoli cells were divided into 4 groups: control, 0.1μM NP, 0.1mM MBP and 0.1μM NP+0.1mM MBP. After 24 hours culture, cells were placed on ice and treated with Trizol Reagent.

value: Tesis


title: Sertoli cells, 0.1mM MBP


title: Sertoli cells, 0.1μM NP


title: Sertoli cells, 9d, 1


title: Patient 384 Lymphatic malformation_tongue

value: 156 months


title: Sertoli cells, 9d, 3


title: Sertoli cells, 9d, 0.1mM MBP, 3

description: microRNA expression data from 9-day-old rat Sertoli cells treated with 0.1mM MBP.


title: Sertoli cells, control


title: Patient 292 Lymphatic malformation_tongue


title: Sertoli cells, 9d, 0.1mM MBP, 2


title: SLPI-deficient Ca9-22 cells

source_name: SLPI-deficient human gingival carcinoma cell line

value: SLPI-deficient


title: Patient 267 Lymphatic malformation_neck


title: Sertoli cells, 9d, 0.1mM MBP, 1


title: Patient 267 Lymphatic malformation_tongue


title: Patient 232 Infantile hemangioma_nose

source_name: Infantile hemangioma_nose

value: 18 months


title: Patient 220 Lymphatic malformation_tongue

value: 264 months


title: Sertoli cells, 9d, 1

description: microRNA expression data from 9-day-old rat Sertoli cells.


title: Patient 141 Infantile hemangioma_nose

value: 17 months


title: Patient 137 Normal skin

value: 12 months


title: Patient 136 Infantile hemangioma_midface


title: Patient 137 Infantile hemangioma_forehead


title: Sertoli cells, 9d, 3


title: Patient 136 Normal skin


title: Sertoli cells, 9d, 2


title: OA_16

type: genomic

city: La Jolla

first: Gary

middle: S

last: Firestein

state: California

address: 9500 Gilman Dr

institute: UCSD

hyb_protocol: Infinium Human Methylation 450k BeadChip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended protocol

data_processing:
R, minfi package
The non_normalized.txt contains Unmethylated and methylated signal intensities.

label: Cy5 and Cy3

molecule: genomic DNA

label_protocol: Standard Illumina Protocol

extract_protocol: Applied Biosystems, MagMax kit was used for extraction. DNA was quantified by Pico-Green and concentrated on Amicon Ultra Spin columns

tag: subject status

value: osteoarthritis (OA) patient

value: female

value: hip

value: Fibroblast-like synoviocytes


title: OA_12


title: aorta_high fat diet_rep2

city: Changsha

first: Mei-hua

last: Bao

state: Hunan

address: No. 1501, Leifeng Road

department: Anatomy, Histology and Embryology

institute: Changsha Medical University

description: SAMPLE 5

hyb_protocol: 0.6 μg of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/μg cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 22.5μl containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers' instructions. On completion of the fragmentation reaction, 22.5μl of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to Agilent mouse lncRNA Microarray（4*180K）for 17 hours at 65°C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505C) using one color scan setting for 4x180k array slides (Scan Area 61x21.6 mm, Scan resolution 3um, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: The scanned images were analyzed with Feature Extraction Software 10.7.1.1 (Agilent) using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities as the raw data. Raw data were normalized in quantile algorithm with Genespring 13.0(Agilent). Probe that at least 1 out of 2 samples flagged as Detected were maintained.

organism: Mus musculus

source_name: high fat diet_8 wks_aorta

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.2 μg RNA using the One-Color Low RNA Input Linear Amplification PLUS kit (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA). Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

growth_protocol: The Mice were housed in a temperature-controlled room (22±0.8℃) and a relative humidity of 55±10%, with  12 h light-dark cycles and free access to water and chow

extract_protocol: RNA was extracted by mirVanaTM RNA Isolation Kit (Applied Biosystem p/n AM1556 ) following the manufacturer's instructions.

treatment_protocol: The apoE(-/-) mice were randomly divided into two groups with 3 animals for each group. The normal diet group was fed with normal chow, while the treated group were fed with a high-fat, high-cholesterol diet containing 20% fat and 2.5% cholesterol. The treatment duration is 8-week.

tag: strain background

value: homozygous apoE(-/-)

value: male

tag: diet

value: high fat diet for 8 weeks

value: aorta


title: RA_30

value: rheumatoid arthritis (RA) patient


title: OA_13


title: OA_14

value: knee


title: aorta_high fat diet_rep1

description: SAMPLE 4


title: OA_15


title: aorta_high fat diet_rep3

description: SAMPLE 6


title: aorta_normal diet_rep3

description: SAMPLE 3

source_name: normal diet_8 wks_aorta

value: normal diet for 8 weeks


title: aorta_normal diet_rep1

description: SAMPLE 1


title: RA_27


title: RA_26


title: aorta_normal diet_rep2

description: SAMPLE 2


title: RA_29


title: RA_25

value: ankle


title: RA_22

value: elbow


title: RA_24


title: RA_13


title: RA_18


title: RA_21


title: RA_20


title: RA_12


title: RA_14


title: RA_23


title: RA_16


title: RA_19


title: RA_17


title: RA_28


title: Blood of newborn infant, s885

status: Public on Jun 08 2016

city: Research Triangle Park

first: Zongli

last: Xu

address: 111 tw alexander Dr.

institute: NIH/NIEHS

description: Sample name: s885

hyb_protocol: Bisulphite-converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 BeadChip using standard Illumina protocol.

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.

data_processing: BeadStudio software v3.2.

source_name: newborn whole blood, maternal age 26yr

label_protocol: Standard Illumina Protocol.

extract_protocol: Genomic DNA was extracted and purified using the automated Autopure LS system (Gentra, Minneapolis, MN). Extracted DNA was quantified using Quant-iTTM PicoGreen dsDNA reagents (Invitrogen, Grand Island, NY) and stored at -20C. One microgram of DNA was bisulfite converted using the EZ DNA Methylation kit (Zymo Research, Irvine, CA) following the manufacturer's protocol.

value: whole blood

value: newborn

tag: maternalage


title: RA_15


title: Blood of newborn infant, s884

description: Sample name: s884

source_name: newborn whole blood, maternal age 27yr


title: Blood of newborn infant, s887

description: Sample name: s887


title: Blood of newborn infant, s886

description: Sample name: s886

source_name: newborn whole blood, maternal age 29yr


title: Blood of newborn infant, s888

description: Sample name: s888

source_name: newborn whole blood, maternal age 35yr


title: Blood of newborn infant, s880

description: Sample name: s880

source_name: newborn whole blood, maternal age 36yr


title: Blood of newborn infant, s889

description: Sample name: s889

source_name: newborn whole blood, maternal age 22yr


title: Blood of newborn infant, s878

description: Sample name: s878

source_name: newborn whole blood, maternal age 24yr


title: Blood of newborn infant, s874

description: Sample name: s874


title: Blood of newborn infant, s883

description: Sample name: s883


title: Blood of newborn infant, s871

description: Sample name: s871

source_name: newborn whole blood, maternal age 25yr


title: Blood of newborn infant, s868

description: Sample name: s868


title: Blood of newborn infant, s876

description: Sample name: s876

source_name: newborn whole blood, maternal age 38yr


title: Blood of newborn infant, s882

description: Sample name: s882


title: Blood of newborn infant, s865

description: Sample name: s865


title: Blood of newborn infant, s870

description: Sample name: s870


title: Blood of newborn infant, s881

description: Sample name: s881


title: Blood of newborn infant, s879

description: Sample name: s879


title: Blood of newborn infant, s867

description: Sample name: s867

source_name: newborn whole blood, maternal age 28yr


title: Blood of newborn infant, s866

description: Sample name: s866


title: Blood of newborn infant, s877

description: Sample name: s877

source_name: newborn whole blood, maternal age 32yr


title: Blood of newborn infant, s863

description: Sample name: s863

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s869

description: Sample name: s869


title: Blood of newborn infant, s875

description: Sample name: s875


title: Blood of newborn infant, s859

description: Sample name: s859


title: Blood of newborn infant, s872

description: Sample name: s872

source_name: newborn whole blood, maternal age 34yr


title: Blood of newborn infant, s862

description: Sample name: s862


title: Blood of newborn infant, s873

description: Sample name: s873


title: Blood of newborn infant, s860

description: Sample name: s860


title: Blood of newborn infant, s861

description: Sample name: s861

source_name: newborn whole blood, maternal age 30yr


title: Blood of newborn infant, s858

description: Sample name: s858


title: Blood of newborn infant, s857

description: Sample name: s857


title: Blood of newborn infant, s856

description: Sample name: s856

source_name: newborn whole blood, maternal age 37yr


title: Blood of newborn infant, s854

description: Sample name: s854


title: Blood of newborn infant, s852

description: Sample name: s852

source_name: newborn whole blood, maternal age 40yr


title: Blood of newborn infant, s864

description: Sample name: s864


title: Blood of newborn infant, s851

description: Sample name: s851


title: Blood of newborn infant, s855

description: Sample name: s855


title: Blood of newborn infant, s848

description: Sample name: s848

source_name: newborn whole blood, maternal age 23yr


title: Blood of newborn infant, s847

description: Sample name: s847


title: Blood of newborn infant, s849

description: Sample name: s849


title: Blood of newborn infant, s845

description: Sample name: s845

source_name: newborn whole blood, maternal age 33yr


title: Blood of newborn infant, s843

description: Sample name: s843

source_name: newborn whole blood, maternal age 26yr


title: Blood of newborn infant, s830

description: Sample name: s830


title: Blood of newborn infant, s833

description: Sample name: s833


title: Blood of newborn infant, s831

description: Sample name: s831


title: Blood of newborn infant, s839

description: Sample name: s839

source_name: newborn whole blood, maternal age 29yr


title: Blood of newborn infant, s838

description: Sample name: s838


title: Blood of newborn infant, s853

description: Sample name: s853


title: Blood of newborn infant, s834

description: Sample name: s834


title: Blood of newborn infant, s841

description: Sample name: s841


title: Blood of newborn infant, s850

description: Sample name: s850


title: Blood of newborn infant, s842

description: Sample name: s842


title: Blood of newborn infant, s837

description: Sample name: s837


title: Blood of newborn infant, s836

description: Sample name: s836

source_name: newborn whole blood, maternal age 20yr


title: Blood of newborn infant, s829

description: Sample name: s829


title: Blood of newborn infant, s840

description: Sample name: s840


title: Blood of newborn infant, s835

description: Sample name: s835


title: Blood of newborn infant, s846

description: Sample name: s846


title: Blood of newborn infant, s826

description: Sample name: s826


title: Blood of newborn infant, s825

description: Sample name: s825


title: Blood of newborn infant, s827

description: Sample name: s827


title: Blood of newborn infant, s828

description: Sample name: s828


title: Blood of newborn infant, s819

description: Sample name: s819

source_name: newborn whole blood, maternal age 39yr


title: Blood of newborn infant, s823

description: Sample name: s823


title: Blood of newborn infant, s821

description: Sample name: s821


title: Blood of newborn infant, s818

description: Sample name: s818


title: Blood of newborn infant, s820

description: Sample name: s820

source_name: newborn whole blood, maternal age 36yr


title: Blood of newborn infant, s822

description: Sample name: s822


title: Blood of newborn infant, s817

description: Sample name: s817

source_name: newborn whole blood, maternal age 27yr


title: Blood of newborn infant, s824

description: Sample name: s824


title: Blood of newborn infant, s810

description: Sample name: s810


title: Blood of newborn infant, s812

description: Sample name: s812

source_name: newborn whole blood, maternal age 19yr


title: Blood of newborn infant, s813

description: Sample name: s813

source_name: newborn whole blood, maternal age 24yr


title: Blood of newborn infant, s808

description: Sample name: s808


title: Blood of newborn infant, s814

description: Sample name: s814


title: Blood of newborn infant, s816

description: Sample name: s816

source_name: newborn whole blood, maternal age 25yr


title: Blood of newborn infant, s807

description: Sample name: s807


title: Blood of newborn infant, s815

description: Sample name: s815


title: Blood of newborn infant, s809

description: Sample name: s809


title: Blood of newborn infant, s801

description: Sample name: s801

source_name: newborn whole blood, maternal age 32yr


title: Blood of newborn infant, s804

description: Sample name: s804

source_name: newborn whole blood, maternal age 28yr


title: Blood of newborn infant, s793

description: Sample name: s793


title: Blood of newborn infant, s805

description: Sample name: s805


title: Blood of newborn infant, s803

description: Sample name: s803


title: Blood of newborn infant, s794

description: Sample name: s794


title: Blood of newborn infant, s798

description: Sample name: s798

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s800

description: Sample name: s800


title: Blood of newborn infant, s795

description: Sample name: s795


title: Blood of newborn infant, s799

description: Sample name: s799


title: Blood of newborn infant, s802

description: Sample name: s802


title: Blood of newborn infant, s796

description: Sample name: s796


title: Blood of newborn infant, s797

description: Sample name: s797

source_name: newborn whole blood, maternal age 34yr


title: Blood of newborn infant, s787

description: Sample name: s787


title: Blood of newborn infant, s783

description: Sample name: s783

source_name: newborn whole blood, maternal age 37yr


title: Blood of newborn infant, s785

description: Sample name: s785


title: Blood of newborn infant, s790

description: Sample name: s790


title: Blood of newborn infant, s788

description: Sample name: s788


title: Blood of newborn infant, s777

description: Sample name: s777


title: Blood of newborn infant, s791

description: Sample name: s791


title: Blood of newborn infant, s781

description: Sample name: s781


title: Blood of newborn infant, s780

description: Sample name: s780


title: Blood of newborn infant, s792

description: Sample name: s792


title: Blood of newborn infant, s789

description: Sample name: s789


title: Blood of newborn infant, s786

description: Sample name: s786


title: Blood of newborn infant, s771

description: Sample name: s771


title: Blood of newborn infant, s773

description: Sample name: s773


title: Blood of newborn infant, s772

description: Sample name: s772

source_name: newborn whole blood, maternal age 22yr


title: Blood of newborn infant, s776

description: Sample name: s776


title: Blood of newborn infant, s782

description: Sample name: s782


title: Blood of newborn infant, s784

description: Sample name: s784


title: Blood of newborn infant, s778

description: Sample name: s778


title: Blood of newborn infant, s774

description: Sample name: s774


title: Blood of newborn infant, s844

description: Sample name: s844


title: Blood of newborn infant, s832

description: Sample name: s832


title: Blood of newborn infant, s775

description: Sample name: s775


title: Blood of newborn infant, s770

description: Sample name: s770


title: Blood of newborn infant, s767

description: Sample name: s767


title: Blood of newborn infant, s806

description: Sample name: s806


title: Blood of newborn infant, s769

description: Sample name: s769


title: Blood of newborn infant, s811

description: Sample name: s811

source_name: newborn whole blood, maternal age 44yr


title: Blood of newborn infant, s779

description: Sample name: s779


title: Blood of newborn infant, s764

description: Sample name: s764


title: Blood of newborn infant, s762

description: Sample name: s762


title: Blood of newborn infant, s765

description: Sample name: s765


title: Blood of newborn infant, s768

description: Sample name: s768


title: Blood of newborn infant, s761

description: Sample name: s761


title: Blood of newborn infant, s757

description: Sample name: s757


title: Blood of newborn infant, s760

description: Sample name: s760

source_name: newborn whole blood, maternal age 18yr


title: Blood of newborn infant, s750

description: Sample name: s750


title: Blood of newborn infant, s756

description: Sample name: s756

source_name: newborn whole blood, maternal age 38yr


title: Blood of newborn infant, s754

description: Sample name: s754


title: Blood of newborn infant, s763

description: Sample name: s763

source_name: newborn whole blood, maternal age 26yr


title: Blood of newborn infant, s758

description: Sample name: s758

source_name: newborn whole blood, maternal age 29yr


title: Blood of newborn infant, s766

description: Sample name: s766


title: Blood of newborn infant, s755

description: Sample name: s755

source_name: newborn whole blood, maternal age 35yr


title: Blood of newborn infant, s759

description: Sample name: s759

source_name: newborn whole blood, maternal age 30yr


title: Blood of newborn infant, s753

description: Sample name: s753


title: Blood of newborn infant, s744

description: Sample name: s744


title: Blood of newborn infant, s752

description: Sample name: s752

source_name: newborn whole blood, maternal age 23yr


title: Blood of newborn infant, s749

description: Sample name: s749

source_name: newborn whole blood, maternal age 33yr


title: Blood of newborn infant, s748

description: Sample name: s748


title: Blood of newborn infant, s741

description: Sample name: s741


title: Blood of newborn infant, s747

description: Sample name: s747


title: Blood of newborn infant, s746

description: Sample name: s746


title: Blood of newborn infant, s742

description: Sample name: s742

source_name: newborn whole blood, maternal age 21yr


title: Blood of newborn infant, s743

description: Sample name: s743


title: Blood of newborn infant, s745

description: Sample name: s745

source_name: newborn whole blood, maternal age 20yr


title: Blood of newborn infant, s740

description: Sample name: s740


title: Blood of newborn infant, s737

description: Sample name: s737

source_name: newborn whole blood, maternal age 42yr


title: Blood of newborn infant, s736

description: Sample name: s736


title: Blood of newborn infant, s738

description: Sample name: s738

source_name: newborn whole blood, maternal age 28yr


title: Blood of newborn infant, s734

description: Sample name: s734


title: Blood of newborn infant, s739

description: Sample name: s739


title: Blood of newborn infant, s728

description: Sample name: s728


title: Blood of newborn infant, s733

description: Sample name: s733


title: Blood of newborn infant, s751

description: Sample name: s751


title: Blood of newborn infant, s730

description: Sample name: s730

source_name: newborn whole blood, maternal age 25yr


title: Blood of newborn infant, s726

description: Sample name: s726

source_name: newborn whole blood, maternal age 34yr


title: Blood of newborn infant, s721

description: Sample name: s721


title: Blood of newborn infant, s725

description: Sample name: s725


title: Blood of newborn infant, s731

description: Sample name: s731


title: Blood of newborn infant, s719

description: Sample name: s719

source_name: newborn whole blood, maternal age 37yr


title: Blood of newborn infant, s724

description: Sample name: s724

source_name: newborn whole blood, maternal age 27yr


title: Blood of newborn infant, s727

description: Sample name: s727


title: Blood of newborn infant, s716

description: Sample name: s716


title: Blood of newborn infant, s722

description: Sample name: s722


title: Blood of newborn infant, s714

description: Sample name: s714


title: Blood of newborn infant, s718

description: Sample name: s718


title: Blood of newborn infant, s729

description: Sample name: s729


title: Blood of newborn infant, s717

description: Sample name: s717


title: Blood of newborn infant, s720

description: Sample name: s720


title: Blood of newborn infant, s732

description: Sample name: s732


title: Blood of newborn infant, s723

description: Sample name: s723

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s713

description: Sample name: s713


title: Blood of newborn infant, s711

description: Sample name: s711


title: Blood of newborn infant, s709

description: Sample name: s709


title: Blood of newborn infant, s715

description: Sample name: s715


title: Blood of newborn infant, s710

description: Sample name: s710


title: Blood of newborn infant, s735

description: Sample name: s735

source_name: newborn whole blood, maternal age 36yr


title: Blood of newborn infant, s708

description: Sample name: s708


title: Blood of newborn infant, s707

description: Sample name: s707


title: Blood of newborn infant, s704

description: Sample name: s704


title: Blood of newborn infant, s705

description: Sample name: s705


title: Blood of newborn infant, s706

description: Sample name: s706


title: Blood of newborn infant, s712

description: Sample name: s712

source_name: newborn whole blood, maternal age 22yr


title: Blood of newborn infant, s703

description: Sample name: s703


title: Blood of newborn infant, s687

description: Sample name: s687


title: Blood of newborn infant, s695

description: Sample name: s695


title: Blood of newborn infant, s701

description: Sample name: s701


title: Blood of newborn infant, s702

description: Sample name: s702


title: Blood of newborn infant, s692

description: Sample name: s692


title: Blood of newborn infant, s700

description: Sample name: s700


title: Blood of newborn infant, s690

description: Sample name: s690


title: Blood of newborn infant, s696

description: Sample name: s696


title: Blood of newborn infant, s686

description: Sample name: s686

source_name: newborn whole blood, maternal age 38yr


title: Blood of newborn infant, s683

description: Sample name: s683


title: Blood of newborn infant, s685

description: Sample name: s685


title: Blood of newborn infant, s697

description: Sample name: s697

source_name: newborn whole blood, maternal age 29yr


title: Blood of newborn infant, s684

description: Sample name: s684

source_name: newborn whole blood, maternal age 32yr


title: Blood of newborn infant, s699

description: Sample name: s699


title: Blood of newborn infant, s682

description: Sample name: s682

source_name: newborn whole blood, maternal age 24yr


title: Blood of newborn infant, s693

description: Sample name: s693


title: Blood of newborn infant, s691

description: Sample name: s691


title: Blood of newborn infant, s698

description: Sample name: s698


title: Blood of newborn infant, s679

description: Sample name: s679

source_name: newborn whole blood, maternal age 30yr


title: Blood of newborn infant, s678

description: Sample name: s678


title: Blood of newborn infant, s675

description: Sample name: s675


title: Blood of newborn infant, s677

description: Sample name: s677


title: Blood of newborn infant, s680

description: Sample name: s680


title: Blood of newborn infant, s681

description: Sample name: s681


title: Blood of newborn infant, s673

description: Sample name: s673


title: Blood of newborn infant, s676

description: Sample name: s676


title: Blood of newborn infant, s672

description: Sample name: s672


title: Blood of newborn infant, s665

description: Sample name: s665


title: Blood of newborn infant, s663

description: Sample name: s663


title: Blood of newborn infant, s668

description: Sample name: s668

source_name: newborn whole blood, maternal age 33yr


title: Blood of newborn infant, s669

description: Sample name: s669


title: Blood of newborn infant, s667

description: Sample name: s667


title: Blood of newborn infant, s664

description: Sample name: s664


title: Blood of newborn infant, s666

description: Sample name: s666


title: Blood of newborn infant, s662

description: Sample name: s662

source_name: newborn whole blood, maternal age 39yr


title: Blood of newborn infant, s670

description: Sample name: s670


title: Blood of newborn infant, s654

description: Sample name: s654


title: Blood of newborn infant, s660

description: Sample name: s660


title: Blood of newborn infant, s653

description: Sample name: s653


title: Blood of newborn infant, s658

description: Sample name: s658


title: Blood of newborn infant, s650

description: Sample name: s650

source_name: newborn whole blood, maternal age 26yr


title: Blood of newborn infant, s651

description: Sample name: s651


title: Blood of newborn infant, s661

description: Sample name: s661


title: Blood of newborn infant, s655

description: Sample name: s655


title: Blood of newborn infant, s694

description: Sample name: s694

source_name: newborn whole blood, maternal age 23yr


title: Blood of newborn infant, s647

description: Sample name: s647


title: Blood of newborn infant, s659

description: Sample name: s659

source_name: newborn whole blood, maternal age 35yr


title: Blood of newborn infant, s689

description: Sample name: s689


title: Blood of newborn infant, s688

description: Sample name: s688


title: Blood of newborn infant, s646

description: Sample name: s646


title: Blood of newborn infant, s652

description: Sample name: s652


title: Blood of newborn infant, s648

description: Sample name: s648


title: Blood of newborn infant, s642

description: Sample name: s642


title: Blood of newborn infant, s641

description: Sample name: s641


title: Blood of newborn infant, s671

description: Sample name: s671

source_name: newborn whole blood, maternal age 21yr


title: Blood of newborn infant, s644

description: Sample name: s644


title: Blood of newborn infant, s674

description: Sample name: s674


title: Blood of newborn infant, s643

description: Sample name: s643


title: Blood of newborn infant, s656

description: Sample name: s656


title: Blood of newborn infant, s649

description: Sample name: s649


title: Blood of newborn infant, s630

description: Sample name: s630


title: Blood of newborn infant, s638

description: Sample name: s638


title: Blood of newborn infant, s645

description: Sample name: s645


title: Blood of newborn infant, s657

description: Sample name: s657


title: Blood of newborn infant, s628

description: Sample name: s628


title: Blood of newborn infant, s636

description: Sample name: s636

source_name: newborn whole blood, maternal age 28yr


title: Blood of newborn infant, s640

description: Sample name: s640

source_name: newborn whole blood, maternal age 34yr


title: Blood of newborn infant, s631

description: Sample name: s631

source_name: newborn whole blood, maternal age 40yr


title: Blood of newborn infant, s633

description: Sample name: s633

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s635

description: Sample name: s635


title: Blood of newborn infant, s639

description: Sample name: s639


title: Blood of newborn infant, s629

description: Sample name: s629

source_name: newborn whole blood, maternal age 36yr


title: Blood of newborn infant, s637

description: Sample name: s637


title: Blood of newborn infant, s634

description: Sample name: s634


title: Blood of newborn infant, s632

description: Sample name: s632


title: Blood of newborn infant, s620

description: Sample name: s620


title: Blood of newborn infant, s626

description: Sample name: s626


title: Blood of newborn infant, s624

description: Sample name: s624

source_name: newborn whole blood, maternal age 27yr


title: Blood of newborn infant, s625

description: Sample name: s625


title: Blood of newborn infant, s619

description: Sample name: s619


title: Blood of newborn infant, s627

description: Sample name: s627


title: Blood of newborn infant, s618

description: Sample name: s618


title: Blood of newborn infant, s621

description: Sample name: s621


title: Blood of newborn infant, s622

description: Sample name: s622


title: Blood of newborn infant, s615

description: Sample name: s615


title: Blood of newborn infant, s623

description: Sample name: s623


title: Blood of newborn infant, s617

description: Sample name: s617


title: Blood of newborn infant, s614

description: Sample name: s614

source_name: newborn whole blood, maternal age 42yr


title: Blood of newborn infant, s616

description: Sample name: s616


title: Blood of newborn infant, s612

description: Sample name: s612


title: Blood of newborn infant, s613

description: Sample name: s613


title: Blood of newborn infant, s611

description: Sample name: s611

source_name: newborn whole blood, maternal age 25yr


title: Blood of newborn infant, s610

description: Sample name: s610


title: Blood of newborn infant, s608

description: Sample name: s608


title: Blood of newborn infant, s609

description: Sample name: s609


title: Blood of newborn infant, s603

description: Sample name: s603


title: Blood of newborn infant, s602

description: Sample name: s602

source_name: newborn whole blood, maternal age 32yr


title: Blood of newborn infant, s604

description: Sample name: s604


title: Blood of newborn infant, s607

description: Sample name: s607


title: Blood of newborn infant, s605

description: Sample name: s605


title: Blood of newborn infant, s601

description: Sample name: s601

source_name: newborn whole blood, maternal age 37yr


title: Blood of newborn infant, s599

description: Sample name: s599


title: Blood of newborn infant, s606

description: Sample name: s606

source_name: newborn whole blood, maternal age 29yr


title: Blood of newborn infant, s598

description: Sample name: s598


title: Blood of newborn infant, s594

description: Sample name: s594


title: Blood of newborn infant, s589

description: Sample name: s589


title: Blood of newborn infant, s596

description: Sample name: s596


title: Blood of newborn infant, s593

description: Sample name: s593


title: Blood of newborn infant, s590

description: Sample name: s590

source_name: newborn whole blood, maternal age 20yr


title: Blood of newborn infant, s591

description: Sample name: s591

source_name: newborn whole blood, maternal age 38yr


title: Blood of newborn infant, s597

description: Sample name: s597


title: Blood of newborn infant, s588

description: Sample name: s588

source_name: newborn whole blood, maternal age 33yr


title: Blood of newborn infant, s600

description: Sample name: s600


title: Blood of newborn infant, s595

description: Sample name: s595


title: Blood of newborn infant, s587

description: Sample name: s587

source_name: newborn whole blood, maternal age 24yr


title: Blood of newborn infant, s584

description: Sample name: s584

source_name: newborn whole blood, maternal age 30yr


title: Blood of newborn infant, s586

description: Sample name: s586


title: Blood of newborn infant, s578

description: Sample name: s578

source_name: newborn whole blood, maternal age 19yr


title: Blood of newborn infant, s583

description: Sample name: s583

source_name: newborn whole blood, maternal age 23yr


title: Blood of newborn infant, s581

description: Sample name: s581

source_name: newborn whole blood, maternal age 26yr


title: Blood of newborn infant, s592

description: Sample name: s592

source_name: newborn whole blood, maternal age 18yr


title: Blood of newborn infant, s585

description: Sample name: s585

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s580

description: Sample name: s580


title: Blood of newborn infant, s576

description: Sample name: s576


title: Blood of newborn infant, s577

description: Sample name: s577


title: Blood of newborn infant, s575

description: Sample name: s575


title: Blood of newborn infant, s574

description: Sample name: s574


title: Blood of newborn infant, s564

description: Sample name: s564


title: Blood of newborn infant, s571

description: Sample name: s571

source_name: newborn whole blood, maternal age 34yr


title: Blood of newborn infant, s567

description: Sample name: s567


title: Blood of newborn infant, s569

description: Sample name: s569

source_name: newborn whole blood, maternal age 28yr


title: Blood of newborn infant, s572

description: Sample name: s572


title: Blood of newborn infant, s562

description: Sample name: s562


title: Blood of newborn infant, s568

description: Sample name: s568


title: Blood of newborn infant, s573

description: Sample name: s573


title: Blood of newborn infant, s563

description: Sample name: s563


title: Blood of newborn infant, s558

description: Sample name: s558


title: Blood of newborn infant, s566

description: Sample name: s566


title: Blood of newborn infant, s561

description: Sample name: s561


title: Blood of newborn infant, s557

description: Sample name: s557


title: Blood of newborn infant, s570

description: Sample name: s570

source_name: newborn whole blood, maternal age 27yr


title: Blood of newborn infant, s552

description: Sample name: s552


title: Blood of newborn infant, s559

description: Sample name: s559


title: Blood of newborn infant, s556

description: Sample name: s556


title: Blood of newborn infant, s555

description: Sample name: s555


title: Blood of newborn infant, s547

description: Sample name: s547


title: Blood of newborn infant, s548

description: Sample name: s548


title: Blood of newborn infant, s565

description: Sample name: s565

source_name: newborn whole blood, maternal age 35yr


title: Blood of newborn infant, s551

description: Sample name: s551


title: Blood of newborn infant, s541

description: Sample name: s541


title: Blood of newborn infant, s546

description: Sample name: s546


title: Blood of newborn infant, s554

description: Sample name: s554


title: Blood of newborn infant, s545

description: Sample name: s545


title: Blood of newborn infant, s579

description: Sample name: s579


title: Blood of newborn infant, s549

description: Sample name: s549


title: Blood of newborn infant, s538

description: Sample name: s538

source_name: newborn whole blood, maternal age 32yr


title: Blood of newborn infant, s540

description: Sample name: s540


title: Blood of newborn infant, s582

description: Sample name: s582


title: Blood of newborn infant, s553

description: Sample name: s553


title: Blood of newborn infant, s542

description: Sample name: s542


title: Blood of newborn infant, s537

description: Sample name: s537

source_name: newborn whole blood, maternal age 21yr


title: Blood of newborn infant, s536

description: Sample name: s536


title: Blood of newborn infant, s543

description: Sample name: s543


title: Blood of newborn infant, s539

description: Sample name: s539


title: Blood of newborn infant, s544

description: Sample name: s544


title: Blood of newborn infant, s531

description: Sample name: s531


title: Blood of newborn infant, s530

description: Sample name: s530


title: Blood of newborn infant, s534

description: Sample name: s534


title: Blood of newborn infant, s532

description: Sample name: s532


title: Blood of newborn infant, s527

description: Sample name: s527


title: Blood of newborn infant, s525

description: Sample name: s525


title: Blood of newborn infant, s528

description: Sample name: s528


title: Blood of newborn infant, s535

description: Sample name: s535


title: Blood of newborn infant, s560

description: Sample name: s560

source_name: newborn whole blood, maternal age 25yr


title: Blood of newborn infant, s529

description: Sample name: s529

source_name: newborn whole blood, maternal age 29yr


title: Blood of newborn infant, s523

description: Sample name: s523

source_name: newborn whole blood, maternal age 40yr


title: Blood of newborn infant, s520

description: Sample name: s520


title: Blood of newborn infant, s526

description: Sample name: s526


title: Blood of newborn infant, s533

description: Sample name: s533


title: Blood of newborn infant, s513

description: Sample name: s513


title: Blood of newborn infant, s522

description: Sample name: s522


title: Blood of newborn infant, s517

description: Sample name: s517


title: Blood of newborn infant, s515

description: Sample name: s515

source_name: newborn whole blood, maternal age 38yr


title: Blood of newborn infant, s516

description: Sample name: s516


title: Blood of newborn infant, s519

description: Sample name: s519


title: Blood of newborn infant, s521

description: Sample name: s521


title: Blood of newborn infant, s514

description: Sample name: s514


title: Blood of newborn infant, s524

description: Sample name: s524


title: Blood of newborn infant, s501

description: Sample name: s501


title: Blood of newborn infant, s518

description: Sample name: s518


title: Blood of newborn infant, s511

description: Sample name: s511


title: Blood of newborn infant, s502

description: Sample name: s502

source_name: newborn whole blood, maternal age 33yr


title: Blood of newborn infant, s508

description: Sample name: s508

source_name: newborn whole blood, maternal age 30yr


title: Blood of newborn infant, s550

description: Sample name: s550

source_name: newborn whole blood, maternal age 22yr


title: Blood of newborn infant, s509

description: Sample name: s509

source_name: newborn whole blood, maternal age 24yr


title: Blood of newborn infant, s512

description: Sample name: s512


title: Blood of newborn infant, s504

description: Sample name: s504


title: Blood of newborn infant, s503

description: Sample name: s503


title: Blood of newborn infant, s505

description: Sample name: s505


title: Blood of newborn infant, s510

description: Sample name: s510


title: Blood of newborn infant, s497

description: Sample name: s497


title: Blood of newborn infant, s507

description: Sample name: s507


title: Blood of newborn infant, s500

description: Sample name: s500


title: Blood of newborn infant, s499

description: Sample name: s499


title: Blood of newborn infant, s489

description: Sample name: s489


title: Blood of newborn infant, s496

description: Sample name: s496


title: Blood of newborn infant, s494

description: Sample name: s494

source_name: newborn whole blood, maternal age 26yr


title: Blood of newborn infant, s506

description: Sample name: s506


title: Blood of newborn infant, s490

description: Sample name: s490


title: Blood of newborn infant, s487

description: Sample name: s487


title: Blood of newborn infant, s495

description: Sample name: s495


title: Blood of newborn infant, s498

description: Sample name: s498


title: Blood of newborn infant, s488

description: Sample name: s488


title: Blood of newborn infant, s491

description: Sample name: s491


title: Blood of newborn infant, s486

description: Sample name: s486


title: Blood of newborn infant, s492

description: Sample name: s492

source_name: newborn whole blood, maternal age 23yr


title: Blood of newborn infant, s476

description: Sample name: s476


title: Blood of newborn infant, s493

description: Sample name: s493


title: Blood of newborn infant, s481

description: Sample name: s481

source_name: newborn whole blood, maternal age 36yr


title: Blood of newborn infant, s485

description: Sample name: s485


title: Blood of newborn infant, s477

description: Sample name: s477


title: Blood of newborn infant, s479

description: Sample name: s479


title: Blood of newborn infant, s469

description: Sample name: s469


title: Blood of newborn infant, s480

description: Sample name: s480

source_name: newborn whole blood, maternal age 19yr


title: Blood of newborn infant, s483

description: Sample name: s483

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s475

description: Sample name: s475


title: Blood of newborn infant, s470

description: Sample name: s470

source_name: newborn whole blood, maternal age 39yr


title: Blood of newborn infant, s484

description: Sample name: s484

source_name: newborn whole blood, maternal age 27yr


title: Blood of newborn infant, s473

description: Sample name: s473


title: Blood of newborn infant, s466

description: Sample name: s466


title: Blood of newborn infant, s458

description: Sample name: s458

source_name: newborn whole blood, maternal age 32yr


title: Blood of newborn infant, s474

description: Sample name: s474

source_name: newborn whole blood, maternal age 28yr


title: Blood of newborn infant, s478

description: Sample name: s478

source_name: newborn whole blood, maternal age 37yr


title: Blood of newborn infant, s482

description: Sample name: s482

source_name: newborn whole blood, maternal age 21yr


title: Blood of newborn infant, s461

description: Sample name: s461


title: Blood of newborn infant, s467

description: Sample name: s467


title: Blood of newborn infant, s468

description: Sample name: s468

source_name: newborn whole blood, maternal age 25yr


title: Blood of newborn infant, s471

description: Sample name: s471


title: Blood of newborn infant, s463

description: Sample name: s463


title: Blood of newborn infant, s472

description: Sample name: s472


title: Blood of newborn infant, s459

description: Sample name: s459


title: Blood of newborn infant, s460

description: Sample name: s460


title: Blood of newborn infant, s462

description: Sample name: s462

source_name: newborn whole blood, maternal age 20yr


title: C. elegans_control_rep3

city: Salisbury Cove

first: Dustin

middle: Lynn

last: Updike

state: ME

address: 159 Old Bar Harbor Rd.

institute: Mount Desert Island Biological Laboratory

hyb_protocol: For the hybridization, the Agilent Gene Expression Hybridization Kit (Agilent Technologies) was used following the manufacture`s protocol. 600 ng cRNA was hybridized on a 8x60K microarray at 65° C for 17 h using Agilent`s recommended hybridization chamber and oven. Finally, the microarray was washed once with Agilent Gene Expression Wash Buffer 1 for one minute at ambient temperature followed by a second wash with preheated (37° C) Gene Expression Wash Buffer 2 for one minute.

scan_protocol: Fluorescence signals on microarrays are detected by the SureScan Microarray Scanner (Agilent Technologies) at a resolution of 3 micron for SurePrint G3 Gene Expression Microarrays and 5 micron for HD Microarray formats, generating a 20 bit TIFF file respectively.

data_processing: Data of all samples were quantile normalized using ranked median quantiles (Bolstad et al. 2003).

organism: Caenorhabditis elegans

source_name: control_whole, young adult worm lysate

label_protocol: The Low Input QuickAmp Labeling Kit (Agilent Technologies) is used for generation of fluorescent cRNA (complementary RNA). cRNA was amplified by using oligo-dT primer and labelled with cyanine 3-CTP following the manufacture`s protocol.

growth_protocol: For each of the four biological replicates of DUP17 and DUP9 strains, synchronized L1 larvae were seeded on 10 plates, grown at 20°C, and young adults were collected (corresponding to 90% with a vulva and no or few eggs).

extract_protocol: Total RNA was extracted with Trizol Reagent and ran through an RNA Stable kit (Biomatrica), which was submitted for expression analysis.

treatment_protocol: Young adults were washed three times, pelleted, and frozen.

tag: strain

value: control

tag: developmental stage

value: young adult worms


title: Blood of newborn infant, s454

description: Sample name: s454

tag: gender


title: Blood of newborn infant, s464

description: Sample name: s464

source_name: newborn whole blood, maternal age 35yr


title: C. elegans_control_rep2


title: Blood of newborn infant, s456

description: Sample name: s456

source_name: newborn whole blood, maternal age 38yr


title: Blood of newborn infant, s457

description: Sample name: s457


title: C. elegans_control_rep1


title: Blood of newborn infant, s452

description: Sample name: s452

source_name: newborn whole blood, maternal age 29yr


title: C. elegans_control_rep4


title: Blood of newborn infant, s453

description: Sample name: s453

source_name: newborn whole blood, maternal age 34yr


title: Blood of newborn infant, s465

description: Sample name: s465


title: Blood of newborn infant, s449

description: Sample name: s449

source_name: newborn whole blood, maternal age 33yr


title: Blood of newborn infant, s448

description: Sample name: s448


title: C. elegans_elli-1_rep4

source_name: elli-1_whole, young adult worm lysate


title: Blood of newborn infant, s445

description: Sample name: s445


title: Blood of newborn infant, s450

description: Sample name: s450

source_name: newborn whole blood, maternal age 26yr


title: Blood of newborn infant, s447

description: Sample name: s447


title: Blood of newborn infant, s455

description: Sample name: s455


title: Blood of newborn infant, s442

description: Sample name: s442

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s446

description: Sample name: s446


title: Blood of newborn infant, s440

description: Sample name: s440


title: Blood of newborn infant, s443

description: Sample name: s443


title: C. elegans_elli-1_rep2


title: Blood of newborn infant, s451

description: Sample name: s451


title: Blood of newborn infant, s441

description: Sample name: s441


title: Blood of newborn infant, s438

description: Sample name: s438


title: Blood of newborn infant, s444

description: Sample name: s444


title: Blood of newborn infant, s434

description: Sample name: s434


title: Blood of newborn infant, s436

description: Sample name: s436


title: Blood of newborn infant, s437

description: Sample name: s437

source_name: newborn whole blood, maternal age 22yr


title: Blood of newborn infant, s439

description: Sample name: s439

source_name: newborn whole blood, maternal age 23yr


title: crestin (+) scale 3 [gene-level]

first: Leonard

last: Zon

address: 1 Blackfan Circle

department: Oncology/Hematology

description:
G+III.071813_(ZebGene-1_0-st).CEL
RMA expression value derived from Expression Console software

hyb_protocol: Samples were hybridized to Zebarfish Gene 1.0 ST Arrays (Affymetrix) and scanned at the Microarray Core Facility at the IDDRC of Boston Children's Hospital and Harvard Medical School.

scan_protocol: Scanning was done per manufacturer's instructions.

data_processing: Raw data were processed using the Affymetrix Command Console Software to determine RMA-normalized expression values (log2) and used to identify differences in gene expression between GFP (+) and (-) samples.

organism: Danio rerio

label_protocol: Amplification and library preparation was performed using the Ovation Pico WTA System V2 and Encore Biotin Module labeling.

growth_protocol: Adult zebrafish grown under standard husbandry conditions in pH-monitored, fish water at 28.5 C fed with Artemia per institutional and IACUC protocols.

extract_protocol: Transgenic p53/BRAF/Na/MiniCoopR/crestin:EGFP melanoma-prone zebrafish adults were viewed under the fluorescent dissecting scope for the presence of crestin:EGFP (+) scales.  Single EGFP (+) and adjacent (-) scales were plucked and immediately placed into Trizol, vortexed for 2 minutes, and then purified per manufacturer's instructions with the use of Sigma LPA polymer during precipitation.  RNA was run on a Bioanalyzer to ensure high quality.

tag: scale

value: crestin:EGFP (+)


title: crestin (-) scale 1 [gene-level]

description:
G-I.071813_(ZebGene-1_0-st).CEL
RMA expression value derived from Expression Console software

value: crestin:EGFP (-)


title: crestin (-) scale 2 [gene-level]

description:
G-II.071813_(ZebGene-1_0-st).CEL
RMA expression value derived from Expression Console software


title: crestin (-) scale 3 [gene-level]

description:
G-III.071813_(ZebGene-1_0-st).CEL
RMA expression value derived from Expression Console software


title: C. elegans_elli-1_rep1


title: crestin (+) scale 1 [gene-level]

description:
G+I.071813_(ZebGene-1_0-st).CEL
RMA expression value derived from Expression Console software


title: crestin (+) scale 2 [gene-level]

description:
G+II.071813_(ZebGene-1_0-st).CEL
RMA expression value derived from Expression Console software


title: C. elegans_elli-1_rep3


title: Blood of newborn infant, s433

description: Sample name: s433


title: Blood of newborn infant, s426

description: Sample name: s426

value: female


title: Blood of newborn infant, s428

description: Sample name: s428


title: Blood of newborn infant, s432

description: Sample name: s432


title: Blood of newborn infant, s430

description: Sample name: s430


title: Blood of newborn infant, s425

description: Sample name: s425


title: Blood of newborn infant, s419

description: Sample name: s419


title: Blood of newborn infant, s422

description: Sample name: s422

source_name: newborn whole blood, maternal age 27yr


title: Blood of newborn infant, s435

description: Sample name: s435

source_name: newborn whole blood, maternal age 19yr


title: Blood of newborn infant, s427

description: Sample name: s427


title: Blood of newborn infant, s415

description: Sample name: s415


title: Blood of newborn infant, s421

description: Sample name: s421


title: Blood of newborn infant, s431

description: Sample name: s431

source_name: newborn whole blood, maternal age 32yr


title: Blood of newborn infant, s417

description: Sample name: s417


title: Blood of newborn infant, s418

description: Sample name: s418


title: Blood of newborn infant, s408

description: Sample name: s408


title: Blood of newborn infant, s410

description: Sample name: s410


title: Blood of newborn infant, s416

description: Sample name: s416

source_name: newborn whole blood, maternal age 24yr


title: Blood of newborn infant, s412

description: Sample name: s412


title: Blood of newborn infant, s409

description: Sample name: s409

source_name: newborn whole blood, maternal age 21yr


title: Blood of newborn infant, s406

description: Sample name: s406


title: Blood of newborn infant, s420

description: Sample name: s420


title: Blood of newborn infant, s424

description: Sample name: s424


title: Blood of newborn infant, s405

description: Sample name: s405


title: Blood of newborn infant, s414

description: Sample name: s414

source_name: newborn whole blood, maternal age 30yr


title: Blood of newborn infant, s423

description: Sample name: s423


title: Blood of newborn infant, s407

description: Sample name: s407


title: Blood of newborn infant, s411

description: Sample name: s411


title: Blood of newborn infant, s404

description: Sample name: s404


title: Blood of newborn infant, s399

description: Sample name: s399


title: Blood of newborn infant, s403

description: Sample name: s403


title: Blood of newborn infant, s395

description: Sample name: s395


title: Blood of newborn infant, s402

description: Sample name: s402

source_name: newborn whole blood, maternal age 28yr


title: Blood of newborn infant, s390

description: Sample name: s390


title: Blood of newborn infant, s398

description: Sample name: s398

source_name: newborn whole blood, maternal age 39yr


title: Blood of newborn infant, s393

description: Sample name: s393


title: Blood of newborn infant, s396

description: Sample name: s396


title: Blood of newborn infant, s401

description: Sample name: s401


title: Blood of newborn infant, s392

description: Sample name: s392


title: Blood of newborn infant, s429

description: Sample name: s429


title: Blood of newborn infant, s413

description: Sample name: s413


title: Blood of newborn infant, s394

description: Sample name: s394


title: Blood of newborn infant, s397

description: Sample name: s397


title: Blood of newborn infant, s387

description: Sample name: s387


title: Blood of newborn infant, s382

description: Sample name: s382


title: Blood of newborn infant, s400

description: Sample name: s400


title: Blood of newborn infant, s380

description: Sample name: s380


title: Blood of newborn infant, s383

description: Sample name: s383


title: Blood of newborn infant, s389

description: Sample name: s389


title: Blood of newborn infant, s388

description: Sample name: s388

source_name: newborn whole blood, maternal age 37yr


title: Blood of newborn infant, s376

description: Sample name: s376


title: Blood of newborn infant, s385

description: Sample name: s385

source_name: newborn whole blood, maternal age 17yr


title: Blood of newborn infant, s386

description: Sample name: s386


title: Blood of newborn infant, s379

description: Sample name: s379


title: Blood of newborn infant, s384

description: Sample name: s384


title: Blood of newborn infant, s377

description: Sample name: s377


title: Blood of newborn infant, s381

description: Sample name: s381


title: Blood of newborn infant, s372

description: Sample name: s372


title: Blood of newborn infant, s369

description: Sample name: s369


title: Blood of newborn infant, s375

description: Sample name: s375


title: Blood of newborn infant, s391

description: Sample name: s391


title: Blood of newborn infant, s371

description: Sample name: s371

source_name: newborn whole blood, maternal age 25yr


title: Blood of newborn infant, s374

description: Sample name: s374


title: Blood of newborn infant, s370

description: Sample name: s370


title: Blood of newborn infant, s378

description: Sample name: s378


title: Blood of newborn infant, s373

description: Sample name: s373


title: Blood of newborn infant, s360

description: Sample name: s360

source_name: newborn whole blood, maternal age 38yr


title: Blood of newborn infant, s359

description: Sample name: s359

source_name: newborn whole blood, maternal age 36yr


title: Blood of newborn infant, s368

description: Sample name: s368

source_name: newborn whole blood, maternal age 29yr


title: Blood of newborn infant, s356

description: Sample name: s356


title: Blood of newborn infant, s357

description: Sample name: s357


title: Blood of newborn infant, s358

description: Sample name: s358


title: Blood of newborn infant, s355

description: Sample name: s355

source_name: newborn whole blood, maternal age 20yr


title: Blood of newborn infant, s351

description: Sample name: s351


title: Blood of newborn infant, s367

description: Sample name: s367


title: Blood of newborn infant, s364

description: Sample name: s364


title: Blood of newborn infant, s349

description: Sample name: s349


title: Blood of newborn infant, s366

description: Sample name: s366


title: Blood of newborn infant, s354

description: Sample name: s354


title: Blood of newborn infant, s365

description: Sample name: s365


title: Blood of newborn infant, s353

description: Sample name: s353

source_name: newborn whole blood, maternal age 35yr


title: Blood of newborn infant, s362

description: Sample name: s362

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s350

description: Sample name: s350


title: Blood of newborn infant, s352

description: Sample name: s352


title: Blood of newborn infant, s361

description: Sample name: s361


title: Blood of newborn infant, s346

description: Sample name: s346

source_name: newborn whole blood, maternal age 34yr


title: Blood of newborn infant, s363

description: Sample name: s363

source_name: newborn whole blood, maternal age 19yr


title: Blood of newborn infant, s344

description: Sample name: s344


title: Blood of newborn infant, s345

description: Sample name: s345


title: Blood of newborn infant, s343

description: Sample name: s343


title: Blood of newborn infant, s347

description: Sample name: s347

source_name: newborn whole blood, maternal age 26yr


title: Blood of newborn infant, s342

description: Sample name: s342

source_name: newborn whole blood, maternal age 22yr


title: Blood of newborn infant, s348

description: Sample name: s348


title: Blood of newborn infant, s339

description: Sample name: s339


title: Blood of newborn infant, s336

description: Sample name: s336


title: Blood of newborn infant, s335

description: Sample name: s335

source_name: newborn whole blood, maternal age 40yr


title: Blood of newborn infant, s338

description: Sample name: s338


title: Blood of newborn infant, s334

description: Sample name: s334

source_name: newborn whole blood, maternal age 44yr


title: Blood of newborn infant, s337

description: Sample name: s337

source_name: newborn whole blood, maternal age 23yr


title: Blood of newborn infant, s331

description: Sample name: s331


title: Blood of newborn infant, s332

description: Sample name: s332


title: Blood of newborn infant, s341

description: Sample name: s341


title: Blood of newborn infant, s333

description: Sample name: s333

source_name: newborn whole blood, maternal age 33yr


title: Blood of newborn infant, s340

description: Sample name: s340


title: Blood of newborn infant, s326

description: Sample name: s326


title: Blood of newborn infant, s322

description: Sample name: s322


title: Blood of newborn infant, s327

description: Sample name: s327


title: Blood of newborn infant, s328

description: Sample name: s328


title: Blood of newborn infant, s321

description: Sample name: s321


title: Blood of newborn infant, s330

description: Sample name: s330


title: Blood of newborn infant, s329

description: Sample name: s329


title: Blood of newborn infant, s320

description: Sample name: s320


title: Blood of newborn infant, s325

description: Sample name: s325

source_name: newborn whole blood, maternal age 28yr


title: Blood of newborn infant, s323

description: Sample name: s323

source_name: newborn whole blood, maternal age 24yr


title: Blood of newborn infant, s314

description: Sample name: s314


title: Blood of newborn infant, s317

description: Sample name: s317


title: Blood of newborn infant, s324

description: Sample name: s324


title: Blood of newborn infant, s316

description: Sample name: s316


title: Blood of newborn infant, s319

description: Sample name: s319


title: Blood of newborn infant, s318

description: Sample name: s318


title: Blood of newborn infant, s310

description: Sample name: s310


title: Blood of newborn infant, s315

description: Sample name: s315


title: Blood of newborn infant, s304

description: Sample name: s304


title: Blood of newborn infant, s311

description: Sample name: s311


title: Blood of newborn infant, s306

description: Sample name: s306


title: Blood of newborn infant, s313

description: Sample name: s313


title: Blood of newborn infant, s307

description: Sample name: s307

source_name: newborn whole blood, maternal age 32yr


title: Blood of newborn infant, s308

description: Sample name: s308

source_name: newborn whole blood, maternal age 25yr


title: Blood of newborn infant, s302

description: Sample name: s302


title: Blood of newborn infant, s309

description: Sample name: s309


title: Blood of newborn infant, s300

description: Sample name: s300


title: Blood of newborn infant, s299

description: Sample name: s299

source_name: newborn whole blood, maternal age 30yr


title: Blood of newborn infant, s303

description: Sample name: s303


title: Blood of newborn infant, s312

description: Sample name: s312


title: Blood of newborn infant, s305

description: Sample name: s305


title: Blood of newborn infant, s293

description: Sample name: s293


title: Blood of newborn infant, s297

description: Sample name: s297


title: Blood of newborn infant, s294

description: Sample name: s294

source_name: newborn whole blood, maternal age 29yr


title: Blood of newborn infant, s291

description: Sample name: s291


title: Blood of newborn infant, s301

description: Sample name: s301

source_name: newborn whole blood, maternal age 20yr


title: Blood of newborn infant, s295

description: Sample name: s295


title: Blood of newborn infant, s298

description: Sample name: s298

source_name: newborn whole blood, maternal age 36yr


title: Blood of newborn infant, s292

description: Sample name: s292


title: Blood of newborn infant, s296

description: Sample name: s296


title: Blood of newborn infant, s287

description: Sample name: s287

source_name: newborn whole blood, maternal age 27yr


title: Blood of newborn infant, s284

description: Sample name: s284


title: Blood of newborn infant, s286

description: Sample name: s286


title: Blood of newborn infant, s288

description: Sample name: s288


title: Blood of newborn infant, s289

description: Sample name: s289


title: Blood of newborn infant, s285

description: Sample name: s285


title: Blood of newborn infant, s275

description: Sample name: s275


title: Blood of newborn infant, s290

description: Sample name: s290


title: Blood of newborn infant, s281

description: Sample name: s281


title: Blood of newborn infant, s283

description: Sample name: s283


title: Blood of newborn infant, s279

description: Sample name: s279


title: Blood of newborn infant, s277

description: Sample name: s277


title: Blood of newborn infant, s280

description: Sample name: s280


title: Blood of newborn infant, s282

description: Sample name: s282


title: Blood of newborn infant, s278

description: Sample name: s278


title: Blood of newborn infant, s273

description: Sample name: s273

source_name: newborn whole blood, maternal age 34yr


title: Blood of newborn infant, s271

description: Sample name: s271

source_name: newborn whole blood, maternal age 38yr


title: Blood of newborn infant, s272

description: Sample name: s272


title: Blood of newborn infant, s276

description: Sample name: s276


title: Blood of newborn infant, s267

description: Sample name: s267


title: Blood of newborn infant, s268

description: Sample name: s268


title: Blood of newborn infant, s270

description: Sample name: s270


title: Blood of newborn infant, s274

description: Sample name: s274

source_name: newborn whole blood, maternal age 35yr


title: Blood of newborn infant, s262

description: Sample name: s262


title: Blood of newborn infant, s264

description: Sample name: s264


title: Blood of newborn infant, s269

description: Sample name: s269


title: Blood of newborn infant, s263

description: Sample name: s263


title: Blood of newborn infant, s265

description: Sample name: s265


title: Blood of newborn infant, s266

description: Sample name: s266


title: Blood of newborn infant, s260

description: Sample name: s260

source_name: newborn whole blood, maternal age 26yr


title: Blood of newborn infant, s259

description: Sample name: s259


title: Blood of newborn infant, s261

description: Sample name: s261


title: Blood of newborn infant, s255

description: Sample name: s255


title: Blood of newborn infant, s253

description: Sample name: s253


title: Blood of newborn infant, s251

description: Sample name: s251

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s254

description: Sample name: s254


title: Blood of newborn infant, s256

description: Sample name: s256


title: Blood of newborn infant, s257

description: Sample name: s257


title: Blood of newborn infant, s248

description: Sample name: s248


title: Blood of newborn infant, s247

description: Sample name: s247


title: Blood of newborn infant, s243

description: Sample name: s243

source_name: newborn whole blood, maternal age 18yr


title: Blood of newborn infant, s250

description: Sample name: s250


title: Blood of newborn infant, s252

description: Sample name: s252


title: Blood of newborn infant, s245

description: Sample name: s245


title: Blood of newborn infant, s249

description: Sample name: s249


title: Blood of newborn infant, s244

description: Sample name: s244


title: Blood of newborn infant, s258

description: Sample name: s258


title: Blood of newborn infant, s241

description: Sample name: s241


title: Blood of newborn infant, s246

description: Sample name: s246


title: Blood of newborn infant, s237

description: Sample name: s237


title: Blood of newborn infant, s238

description: Sample name: s238


title: Blood of newborn infant, s240

description: Sample name: s240


title: Blood of newborn infant, s231

description: Sample name: s231

source_name: newborn whole blood, maternal age 21yr


title: Blood of newborn infant, s235

description: Sample name: s235


title: Blood of newborn infant, s239

description: Sample name: s239


title: Blood of newborn infant, s232

description: Sample name: s232


title: Blood of newborn infant, s242

description: Sample name: s242


title: Blood of newborn infant, s236

description: Sample name: s236


title: Blood of newborn infant, s234

description: Sample name: s234


title: Blood of newborn infant, s233

description: Sample name: s233

source_name: newborn whole blood, maternal age 40yr


title: Blood of newborn infant, s230

description: Sample name: s230


title: Blood of newborn infant, s224

description: Sample name: s224

source_name: newborn whole blood, maternal age 22yr


title: Blood of newborn infant, s216

description: Sample name: s216

source_name: newborn whole blood, maternal age 41yr


title: Blood of newborn infant, s227

description: Sample name: s227


title: Blood of newborn infant, s223

description: Sample name: s223


title: Blood of newborn infant, s225

description: Sample name: s225


title: Blood of newborn infant, s226

description: Sample name: s226


title: Blood of newborn infant, s218

description: Sample name: s218


title: Blood of newborn infant, s221

description: Sample name: s221


title: Blood of newborn infant, s222

description: Sample name: s222


title: Blood of newborn infant, s215

description: Sample name: s215


title: Blood of newborn infant, s212

description: Sample name: s212

source_name: newborn whole blood, maternal age 24yr


title: Blood of newborn infant, s213

description: Sample name: s213

source_name: newborn whole blood, maternal age 28yr


title: Blood of newborn infant, s229

description: Sample name: s229


title: Blood of newborn infant, s228

description: Sample name: s228


title: Blood of newborn infant, s214

description: Sample name: s214

source_name: newborn whole blood, maternal age 32yr


title: Blood of newborn infant, s210

description: Sample name: s210

source_name: newborn whole blood, maternal age 17yr


title: Blood of newborn infant, s219

description: Sample name: s219


title: Blood of newborn infant, s208

description: Sample name: s208


title: Blood of newborn infant, s211

description: Sample name: s211


title: Blood of newborn infant, s209

description: Sample name: s209


title: Blood of newborn infant, s202

description: Sample name: s202

source_name: newborn whole blood, maternal age 23yr


title: Blood of newborn infant, s217

description: Sample name: s217

source_name: newborn whole blood, maternal age 29yr


title: Blood of newborn infant, s220

description: Sample name: s220


title: Blood of newborn infant, s204

description: Sample name: s204

source_name: newborn whole blood, maternal age 37yr


title: Blood of newborn infant, s207

description: Sample name: s207


title: Blood of newborn infant, s206

description: Sample name: s206

source_name: newborn whole blood, maternal age 36yr


title: Blood of newborn infant, s205

description: Sample name: s205


title: Blood of newborn infant, s203

description: Sample name: s203


title: Blood of newborn infant, s201

description: Sample name: s201

source_name: newborn whole blood, maternal age 27yr


title: Blood of newborn infant, s198

description: Sample name: s198

source_name: newborn whole blood, maternal age 30yr


title: Blood of newborn infant, s199

description: Sample name: s199

source_name: newborn whole blood, maternal age 25yr


title: Blood of newborn infant, s196

description: Sample name: s196

source_name: newborn whole blood, maternal age 31yr


title: Blood of newborn infant, s195

description: Sample name: s195


title: Blood of newborn infant, s193

description: Sample name: s193


title: Blood of newborn infant, s191

description: Sample name: s191

source_name: newborn whole blood, maternal age 26yr


title: Blood of newborn infant, s194

description: Sample name: s194


title: Blood of newborn infant, s197

description: Sample name: s197


title: Blood of newborn infant, s189

description: Sample name: s189