title: LNCaP_6AA_2

status: Public on May 11 2016

city: Brisbane

first: Colleen

last: Nelson

state: Queensland

address: 199 Ipswich Road

department: Institute of Health and Biomedical Innovation; Vancouver Prostate Centre

country: Australia

institute: Queensland University of Technology; University of British Columbia

description: Biological replicate 2 of 4.

hyb_protocol: 1650 ng of the labeled cRNA were hybridised onto a custom Agilent oligo microarray at 65⁰C for 17 hours.

scan_protocol: Arrays were scanned on an Agilent scanner (G2565CA) using the Agilent Scan Control Software (A.8.4.1), and feature extraction was performed using the Agilent Feature Extraction Software (10.7).

data_processing: A quantile between array normalization was applied and differential expression was determined using the Bayesian adjusted t-statistic linear model of the 'Linear Models for Microarray Data' (LIMMA) package in R.

source_name: LNCaP, 6-AA

label_protocol: 150 ng of total RNA was amplified and labelled using the Agilent Low Input Quick Amp Labeling Kit according to the manufacturer's protocol.

growth_protocol: LNCaP cells were seeded at 1.5 x 10^5 cells per well into 6-well plates in phenol-red free RPMI-1640 medium + 5% FBS and cultured at 37°C in an atmosphere containing 5% CO2 for 24 h before treatment.

extract_protocol: Total cellular RNA was extracted using the Qiagen RNeasy Mini Kit including on-column DNase-I treatment.

treatment_protocol: LNCaP cells were treated for 24 h with 10 nM 6-acetoxy-anopterine (6-AA). 4 biological repeats were processed for microarray analysis.

value: LNCaP

value: prostate cancer cell line

tag: treatment

value: 6-acetoxy-anopterine (6-AA)


title: LNCaP_VIN_3

type: RNA

description: Biological replicate 3 of 3.

molecule: total RNA

organism: Homo sapiens

source_name: LNCaP, vinblastine

treatment_protocol: LNCaP cells were treated for 24 h with 3.25 nM vinblastine. 3 biological repeats were processed for microarray analysis.

tag: cell line

tag: cell type

value: Vinblastine


title: LNCaP_VIN_2

description: Biological replicate 2 of 3.


title: WT_Dark_r3

status: Public on Jun 01 2016

city: Palaiseau

first: Adeline

last: SIMON

address: 22 place de l'agronomie

country: France

institute: INRAE

description: This sample is of wild-type Botrytis cinerea B0510, cultured in darkness. It is the third of three wild-type_dark (WT_D) biological replicates used in this experiment, each from separate cultures.

hyb_protocol: Hybridization on microarrays were done using the procedures established by NimbleGen (Roche)  and the reagents from Invitrogen (Life technologies, France).

scan_protocol: Scanning was performed  using NimbleScan.

data_processing: The raw data (.pair file) was subjected to RMA (Robust Multi-Array Analysis; Irizarry et al. Biostatistics 4(2):249), quantile normalization (Bolstad et al. Bioinformatics 19(2):185), and background correction as implemented in the ANAIS website (http://anais.versailles.inra.fr/).

organism: Botrytis cinerea B05.10

source_name: Botrytis cinerea B0510_wild-type

label_protocol: Synthesis of double-stranded cDNA and Cy3-labeling were done using the procedures established by NimbleGen (Roche) and the reagents from Invitrogen (Life technologies, France)

growth_protocol: Wild type B05.10 and the deltaBcLTF2 mutant were grown for 3-4 days on solid CM before non-sporulating mycelia were transferred to solid CM covered with cellophane overlays. Cultures were incubated for 54 h in darkness, and then half of the cultures were transferred to white light. After 60 min all four cultures (WT-D; WT-L; deltaBcLTF2-D; deltaBcLTF2-L) were harvested.

extract_protocol: Total RNA was extracted using the Trizol procedure. Total RNA was treated with the DNA-free kit to remove any trace of DNA (Ambion - Applied Biosystems, France).

tag: genotype

value: Wild-type

tag: light treatment

value: Dark


title: DeltaBcLTF2_Dark_r3

description: This sample is of Botrytis cinerea B0510 mutant deltaBcLTF2, cultured in darkness. It is the third of three deltaBcLTF2_dark (DeltaLTF2_D) biological replicates used in this experiment, each from separate cultures.

source_name: Botrytis cinerea B0510_deltaBcLTF2

value: Mutant deltaBcLTF2


title: genomic DNA from adjacent normal tissue of OT2

type: genomic

city: new delhi

first: binay

last: panda

address: 1649A vasant kunj

country: India

institute: ganit labs foundation

description: adjacent normal tissue from the oral tongue sub-site

hyb_protocol: bisulphite converted DNA was used as template for target preparation to hybridize on the beadchip and was processed as per the manufacturer’s instructions following Infinium HD and Infinium protocol for HumanMethylation450K BeadChip (Illumina, San Diego, CA) respectively

scan_protocol: data were collected using the HiScan (Illumina) reader

data_processing: GenomeStudio V2011.1 methylation module1.1.1 (Illumina)

label: Cy5 and Cy3

molecule: genomic DNA

label_protocol: Standard Illumina Protocol

extract_protocol: genomic DNA was extracted and purified from tissue samples DNeasy Blood and Tissue kit (Qiagen, Valencia,  CA) as per the manufacturer’s specifications

tag: subject id

tag: patient age (yrs)

tag: patient grade

value: M

tag: disease

value: Oral tongue squamous cell carcinomas (OTSCC)

tag: tissue type

tag: tumor grade

tag: tumor stage

tag: tumor nodal status

tag: survival status

value: Alive

tag: overall survival (months)

tag: disease-free survival (months)


title: WT_Dark_r4

description: This sample is of wild-type Botrytis cinerea B0510, cultured in darkness. It is the fourth of three wild-type_dark (WT_D) biological replicates used in this experiment, each from separate cultures.


title: LNCaP_6AA_3

description: Biological replicate 3 of 4.


title: WT_Dark_r1

description: This sample is of wild-type Botrytis cinerea B0510, cultured in darkness. It is the first of three wild-type_dark (WT_D) biological replicates used in this experiment, each from separate cultures.


title: WT_Light_r4

description: This sample is of wild-type Botrytis cinerea B0510, subjected to a light stimulation. It is the fourth of three wild-type_light (WT_L) biological replicates used in this experiment, each from separate cultures.

value: Light


title: WT_Light_r3

description: This sample is of wild-type Botrytis cinerea B0510, subjected to a light stimulation. It is the third of three wild-type_light (WT_L) biological replicates used in this experiment, each from separate cultures.


title: LNCaP_6AA_4

description: Biological replicate 4 of 4.


title: LNCaP_VIN_1

description: Biological replicate 1 of 3.


title: WT_Light_r1

description: This sample is of wild-type Botrytis cinerea B0510, subjected to a light stimulation. It is the first of three wild-type_light (WT_L) biological replicates used in this experiment, each from separate cultures.


title: LNCaP_6AA_1

description: Biological replicate 1 of 4.


title: LNCaP_DMSO_3

description: Biological replicate 3 of 3.

source_name: LNCaP, DMSO

treatment_protocol: LNCaP cells were treated for 24 h with DMSO (vehicle control). 3 biological repeats were processed for microarray analysis.

value: DMSO


title: CY75_1_CD45_CD8_1__S76_comb

status: Public on Apr 05 2016

type: SRA

city: Rehovot

first: Itay

last: Tirosh

address: Herzl 234

country: Israel

institute: WEIZMANN INSTITUTE OF SCIENCE

library_source: transcriptomic

data_processing:
Following sequencing on the NextSeq, BAM files were converted to merged, demultiplexed FASTQs. Paired-end reads were then mapped to the UCSC hg19 human transcriptome using Bowtie with parameters "-q --phred33-quals -n 1 -e 99999999 -l 25 -I 1 -X 2000 -a -m 15 -S -p 6", which allows alignment of sequences with single base changes such as due to point mutations. Expression levels of genes were quantified as Ei,j=log2(TPMi,j/10+1), where TPMi,j refers to transcript-per-million (TPM) for gene i in sample j, as calculated by RSEM v1.2.3 in paired-end mode. TPM values were divided by 10 since we estimate the complexity of our single cell libraries to be on the order of 100,000 transcripts and would like to avoid counting each transcript ~10 times, as would be the case with TPM, which may inflate the difference between the expression level of a gene in cells in which the gene is detected and those in which it is not detected. For each cell, we quantified the number of genes for which at least one read was mapped, and the average expression level of a curated list of housekeeping genes. We then excluded all cells with either fewer than 1,700 detected genes or an average housekeeping expression (E, as defined above) below 3. Only genes detected with E>2 in at least 5 cells were retained in the processed data file.
Genome_build: hg19
Supplementary_files_format_and_content: Tab-delimited text file containing the normalized expression levels (E) for all genes across all cells that passed QC. The first row denotes the tumor-of-origin, the second denotes classification (based on inferred CNVs) to malignant (2), non-malignant (1) or unresolved (0) cells. The third row denotes the inferred cell types for non-malignant cells, including T-cells (1), B-cells (2), Macrophages (3), Endothelial cells (4) and CAFs (5) and NK cells(6). All other rows correspond to genes, as indicated by the gene Symbols at the first column.

molecule: polyA RNA

source_name: human melanoma

growth_protocol: no culutring (freshly-resected tumor samples)

extract_protocol:
RNA and DNA were isolated using the Qiagen minikit following the manufacturers recommendations.  Whole Transcriptome amplification (WTA) was performed with a modified SMART-Seq2 protocol, with Maxima Reverse Transcriptase (Life Technologies) used in place of superscript II.
WTA products were cleaned with Agencourt XP DNA beads and 70% ethanol (Beckman Coulter) and Illumina sequencing libraries were prepared using Nextera XT (Illumina), as previously described (15). The 96 samples of a multiwall plate were pooled together, and cleaned with two 0.8x DNA SPRIs (Beckman Coulter). Library quality was assessed with a high sensitivity DNA chip (Agilent) and quantified with a high sensitivity dsDNA Quant Kit (Life Technologies). Samples were sequenced on an Illumina NextSeq 500 instrument using 30bp paired-end reads.

treatment_protocol: Resected tumors were transported in DMEM (ThermoFisher Scientific) on ice immediately after surgical procurement. Tumors were rinsed with PBS (Life Technologies). A small fragment was stored in RNA-protect (Qiagen) for bulk RNA and DNA isolation. Using scalpels, the remainder of the tumor was minced into tiny cubes <1 mm3 and transferred into a 50 ml conical tube (BD Falcon) containing 10 ml pre-warmed M199-media (ThermoFisher Scientific), 2 mg/ml collagenase P (Roche) and 10U/μl DNase I (Roche). Tumor pieces were digested in this digestion media for 10 minutes at 37°C, then vortexed for 10 seconds and pipetted up and down for 1 minute using pipettes of descending sizes (25 ml, 10 ml and 5 ml). If needed, this was repeated twice more until a single-cell suspension was obtained. This suspension was then filtered using a 70μm mesh (ThermoFisher Scientific) and residual cell clumps were discarded. The suspension was supplemented with 30 ml PBS (Life Technologies) with 2% fetal calf serum (FCS) (Gemini Bioproducts) and immediately placed on ice. After centrifuging at 580g at 4°C for 6 minutes, the supernatant was discarded and the cell pellet was re-suspended in PBS with FCS and placed on ice prior to staining for FACS. Single-cell suspensions were stained with CD45-FITC (VWR), Calcein-AM (Life Technologies) and CD90-PE (BioLegend) per manufacturer recommendations. First, doublets were excluded based on forward and sideward scatter, then we gated on viable cells (Calceinhigh) and sorted single cells (CD45+ or CD45-CD90+ or CD45-CD90-) into 96-well plates chilled to 4°C, pre-prepared with 10μl TCL buffer (Qiagen) supplemented with 1% beta-mercaptoethanol (lysis buffer). Single-cell lysates were vortexed, spun down at 3700 rpm at 4°C for 2 minutes, immediately placed on dry ice and transferred for storage at -80°C.

tag: disease state

value: melanoma

tag: tumor index


title: cy79-p3-CD45-neg-PD1-pos-AS-C3-R1-E09-S345-comb

description: single cell RNA-seq

data_processing:
Following sequencing on the NextSeq, BAM files were converted to merged, demultiplexed FASTQs. Paired-end reads were then mapped to the UCSC hg19 human transcriptome using Bowtie with parameters "-q --phred33-quals -n 1 -e 99999999 -l 25 -I 1 -X 2000 -a -m 15 -S -p 6", which allows alignment of sequences with single base changes such as due to point mutations. Expression levels of genes were quantified as Ei,j=log2(TPMi,j/10+1), where TPMi,j refers to transcript-per-million (TPM) for gene i in sample j, as calculated by RSEM v1.2.3 in paired-end mode. TPM values were divided by 10 since we estimate the complexity of our single cell libraries to be on the order of 100,000 transcripts and would like to avoid counting each transcript ~10 times, as would be the case with TPM, which may inflate the difference between the expression level of a gene in cells in which the gene is detected and those in which it is not detected. For each cell, we quantified the number of genes for which at least one read was mapped, and the average expression level of a curated list of housekeeping genes. We then excluded all cells with either fewer than 1,700 detected genes or an average housekeeping expression (E, as defined above) below 3. Only genes detected with E>2 in at least 5 cells were retained in the processed data file.
Genome_build: hg19
Supplementary_files_format_and_content: Tab-delimited text file containing the normalized expression levels (E) for all genes with E>2 in at least 5 cells, across 3,249 cells that passed QC. the tumor-of-origin is indicated in the name of each cell (CY##). The first row denotes the classification (based on inferred CNVs) to malignant (2), non-malignant (1) or unresolved (0) cells. The second row denotes the inferred cell types for non-malignant cells, including T-cells (1), B-cells (2), Macrophages (3), Endothelial cells (4) and CAFs (5). All other rows correspond to genes.

source_name: melanoma tumor

growth_protocol: no culturing (freshly-resected tumor samples)

tag: tumor-of-origin


title: CY75_1_CD45_CD8_7__S274_comb


title: CY75_1_CD45_CD8_1__S93_comb


title: LNCaP_DMSO_2

description: Biological replicate 2 of 3.

tag: cell line

tag: cell type

tag: treatment


title: cy79-p1-CD45-pos-PD1-pos-AS-C5-R1-C04-S220-comb

description: single cell RNA-seq


title: CY75_1_CD45_CD8_1__S65_comb


title: CY75_1_CD45_CD8_1__S25_comb


title: CY75_1_CD45_CD8_7__S223_comb


title: LNCaP_DMSO_1

description: Biological replicate 1 of 3.


title: meningioma sample Jed49_MN

status: Public on Apr 20 2016

city: Jeddah

first: Hans-Juergen

last: Schulten

department: Center of Excellence in Genomic Medicine Research

country: Saudi Arabia

institute: King Abdulaziz University

description:
Jed49_MN
Gene expression data from brain tumor tissue.

hyb_protocol: Following fragmentation, 6 ug of cDNA were hybridized for 17 hr at 45C on GeneChip HuGene-1.0-st arrays. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.

data_processing:
Data were generated using the Affymetrix Expression Console Software using Affymetrix default analysis settings.
Meningioma and control data were RMA normalized and analyzed with Partek Genomics Suite 6.6. The RMA-normalized data for the control samples are available in 'GSE77259_normalized_data_for_normal_brain_controls.txt', which is linked to the GSE77259 record as a supplementary file.

label: biotin

source_name: meningioma, grade II, atypical histology with brain invasion

label_protocol: Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 250 ng total RNA.

extract_protocol: Total RNA from biospecimens was extracted using the Qiagen RNeasy mini kit according to the manufacturer's instructions. Integrity of RNA was checked by using the Agilent Bioanalyzer.

tag: tissue

value: meningioma

value: II

tag: tumor location

value: posterior right subfalcine (recurrence)

tag: histology

value: atypical with brain invasion

tag: gender

value: female

tag: age


title: CY75_1_CD45_CD8_1__S12_comb


title: CY75_1_CD45_CD8_3__S127_comb


title: CY75_1_CD45_CD8_1__S61_comb


title: CY75_1_CD45_CD8_7__S265_comb


title: meningioma sample Jed70_MN

description:
Jed70_MN
Gene expression data from brain tumor tissue.

source_name: meningioma, grade I, fibroblastic histology

tag: tumor grade

value: I

value: right temporal

value: fibroblastic


title: CY75_1_CD45_CD8_8__S384_comb


title: CY75_1_CD45_CD8_7__S278_comb


title: CY75_1_CD45_CD8_7__S242_comb


title: CY75_1_CD45_CD8_7__S258_comb


title: CY75_1_CD45_CD8_3__S139_comb


title: CY75_1_CD45_CD8_3__S132_comb


title: CY75_1_CD45_CD8_8__S334_comb


title: CY75_1_CD45_CD8_3__S117_comb


title: CY75_1_CD45_CD8_1__S7_comb


title: CY75_1_CD45_CD8_7__S222_comb


title: CY75_1_CD45_CD8_1__S95_comb


title: WTA0003E+4E_TR (Technical Replicate)

city: Bangalore

first: Genotypic

last: technology

state: Karnataka

address: 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE

institute: Genotypic Technology

description: RNA from soil Samples

hyb_protocol: 4000ng of labeled cRNA were hybridized on the array using the Gene Expression Hybridization kit (Part Number 5188-6420; Agilent) in Sure hybridization Chambers (Agilent) at 65º C for 16 hours. Hybridized slides were washed using Agilent Gene Expression wash buffers (Part No: 5188-5327).

scan_protocol: Scanned using the Agilent Microarray Scanner (Agilent Technologies, Part Number G2600D)

data_processing: Images were quantified using Feature Extraction Software ( Agilent). Normalization of the data was done in GeneSpring GX using the 75th percentile shift method

organism: Mycobacterium leprae

source_name: RNA from soil Samples

label_protocol: The samples were labeled using Agilent Low input Quick-Amp kit Lot No: (Part number: 5190-2331). 25ng of total RNA was reverse transcribed using WT primer tagged to T7 promoter sequence. cDNA thus obtained was converted to double stranded cDNA in the same reaction. Further the cDNA was converted to cRNA in the in-vitro transcription step using T7 RNA polymerase enzyme and Cy3 dye was added into the reaction mix. During cRNA synthesis Cy3 dye was incorporated into the newly synthesized strands. cRNA obtained was cleaned up using Qiagen RNeasy columns (Qiagen, Cat No: 74106). Concentration and amount of dye incorporated was determined using Nanodrop

extract_protocol: RNA was extracted from soil samples with Power Soil® Total RNA Isolation Kit (Mo Bio lab. Inc, Cat log no.12866-25)  following  manufacturer’s protocol.

tag: isolate

value: Pond soil sample from bathing area


title: CY75_1_CD45_CD8_8__S360_comb


title: CY75_1_CD45_CD8_3__S187_comb


title: CY75_1_CD45_CD8_8__S348_comb


title: CY75_1_CD45_CD8_3__S129_comb


title: CY75_1_CD45_CD8_1__S66_comb


title: WTA0003E+4E

description: RNA from soil Samples


title: CY75_1_CD45_CD8_3__S113_comb


title: CY75_1_CD45_CD8_8__S341_comb


title: CY75_1_CD45_CD8_8__S304_comb


title: WTA001H+2H+4H+5H+6H+7H

description: Skin biopsy Specimens

source_name: Skin biopsy Specimens

value: Biopsy taken from Leprosy patient


title: CY75_1_CD45_CD8_8__S300_comb


title: CY75_1_CD45_CD8_3__S134_comb


title: CY75_1_CD45_CD8_3__S169_comb


title: CY75_1_CD45_CD8_7__S287_comb


title: CY75_1_CD45_CD8_3__S181_comb


title: CY75_1_CD45_CD8_1__S23_comb


title: CY75_1_CD45_CD8_7__S235_comb


title: WTA001H+2H+4H+5H+6H+7H_TR (Technical Replicate)

description: Skin biopsy Specimens


title: LCL ICF

status: Public on May 02 2016

city: L'Hospitalet del Llobregat

first: Sebastian

last: Moran

state: Barcelona

address: Av. Gran Via de l'Hospitalet, 199-203

department: PEBC

country: Spain

institute: IDIBELL

description: LCL ICF

hyb_protocol: Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting

data_processing: Genome Studio V2011.2

label: Cy3, Cy5

label_protocol: Standard Illumina labelling protocol

extract_protocol: Total DNA was isolated by standard procedures

value: ICF

value: lymphoblastoid cell line


title: CY75_1_CD45_CD8_8__S344_comb


title: CY75_1_CD45_CD8_1__S63_comb


title: CY75_1_CD45_CD8_3__S112_comb


title: LCL Normal 2

description: LCL Normal

source_name: MS

value: healthy


title: CY75_1_CD45_CD8_7__S203_comb


title: LCL Normal 1

description: LCL Normal

source_name: XX


title: CY75_1_CD45_CD8_1__S6_comb


title: CY75_1_CD45_CD8_3__S111_comb


title: CY75_1_CD45_CD8_3__S184_comb


title: CY75_1_CD45_CD8_7__S218_comb


title: CY75_1_CD45_CD8_1__S69_comb


title: CY75_1_CD45_CD8_3__S149_comb


title: CY75_1_CD45_CD8_7__S288_comb


title: CY75_1_CD45_CD8_1__S1_comb


title: CY75_1_CD45_CD8_3__S156_comb


title: CY75_1_CD45_CD8_7__S248_comb


title: CY75_1_CD45_CD8_8__S354_comb


title: Fibroblast Control

description: Fibroblast Control

value: fibroblast


title: Fibroblast ICF

description: Fibroblast ICF


title: CY75_1_CD45_CD8_7__S205_comb


title: CY75_1_CD45_CD8_8__S355_comb


title: CY75_1_CD45_CD8_3__S120_comb


title: CY75_1_CD45_CD8_8__S368_comb


title: CY75_1_CD45_CD8_8__S303_comb


title: CY75_1_CD45_CD8_7__S252_comb


title: CY75_1_CD45_CD8_7__S224_comb


title: CY75_1_CD45_CD8_1__S21_comb


title: CY75_1_CD45_CD8_7__S240_comb


title: CY75_1_CD45_CD8_3__S104_comb


title: CY75_1_CD45_CD8_1__S73_comb


title: CY75_1_CD45_CD8_8__S363_comb


title: CY75_1_CD45_CD8_1__S78_comb


title: CY75_1_CD45_CD8_1__S14_comb


title: CY75_1_CD45_CD8_7__S238_comb


title: CY75_1_CD45_CD8_7__S247_comb


title: CY75_1_CD45_CD8_8__S375_comb


title: CY75_1_CD45_CD8_7__S256_comb


title: CY75_1_CD45_CD8_7__S194_comb


title: CY75_1_CD45_CD8_8__S321_comb


title: CY75_1_CD45_CD8_7__S254_comb


title: CY75_1_CD45_CD8_7__S214_comb


title: CY75_1_CD45_CD8_1__S33_comb


title: CY75_1_CD45_CD8_7__S230_comb


title: CY75_1_CD45_CD8_3__S172_comb


title: CY75_1_CD45_CD8_1__S17_comb


title: CY75_1_CD45_CD8_3__S105_comb


title: CY75_1_CD45_CD8_8__S335_comb


title: CY75_1_CD45_CD8_7__S231_comb


title: CY75_1_CD45_CD8_1__S4_comb


title: CY75_1_CD45_CD8_7__S217_comb


title: CY75_1_CD45_CD8_3__S179_comb


title: CY75_1_CD45_CD8_3__S164_comb


title: CY75_1_CD45_CD8_1__S43_comb


title: CY75_1_CD45_CD8_7__S209_comb


title: CY75_1_CD45_CD8_3__S99_comb


title: CY75_1_CD45_CD8_3__S116_comb


title: CY75_1_CD45_CD8_3__S133_comb


title: CY75_1_CD45_CD8_3__S137_comb


title: CY75_1_CD45_CD8_7__S202_comb


title: CY75_1_CD45_CD8_8__S320_comb


title: CY75_1_CD45_CD8_8__S312_comb


title: CY75_1_CD45_CD8_8__S328_comb


title: CY75_1_CD45_CD8_8__S352_comb


title: CY75_1_CD45_CD8_3__S190_comb


title: CY75_1_CD45_CD8_3__S170_comb


title: CY75_1_CD45_CD8_8__S291_comb


title: CY75_1_CD45_CD8_8__S326_comb


title: CY75_1_CD45_CD8_1__S67_comb


title: CY75_1_CD45_CD8_3__S124_comb


title: CY75_1_CD45_CD8_8__S367_comb


title: CY75_1_CD45_CD8_7__S263_comb


title: CY75_1_CD45_CD8_7__S262_comb


title: CY75_1_CD45_CD8_7__S269_comb


title: CY75_1_CD45_CD8_8__S327_comb


title: CY75_1_CD45_CD8_1__S77_comb


title: CY75_1_CD45_CD8_1__S87_comb


title: CY75_1_CD45_CD8_8__S302_comb


title: CY75_1_CD45_CD8_7__S220_comb


title: CY75_1_CD45_CD8_7__S236_comb


title: CY75_1_CD45_CD8_3__S171_comb


title: CY75_1_CD45_CD8_8__S299_comb


title: CY75_1_CD45_CD8_1__S53_comb


title: CY75_1_CD45_CD8_3__S97_comb


title: CY75_1_CD45_CD8_1__S62_comb


title: CY75_1_CD45_CD8_1__S49_comb


title: CY75_1_CD45_CD8_3__S114_comb


title: CY75_1_CD45_CD8_3__S161_comb


title: CY75_1_CD45_CD8_7__S245_comb


title: CY75_1_CD45_CD8_1__S72_comb


title: CY75_1_CD45_CD8_1__S42_comb


title: CY75_1_CD45_CD8_8__S383_comb


title: CY75_1_CD45_CD8_3__S138_comb


title: CY75_1_CD45_CD8_8__S289_comb


title: CY75_1_CD45_CD8_3__S147_comb


title: CY75_1_CD45_CD8_8__S342_comb


title: CY75_1_CD45_CD8_1__S58_comb


title: CY75_1_CD45_CD8_1__S20_comb


title: CY75_1_CD45_CD8_8__S361_comb


title: CY75_1_CD45_CD8_7__S208_comb


title: CY75_1_CD45_CD8_8__S362_comb


title: CY75_1_CD45_CD8_7__S216_comb


title: CY75_1_CD45_CD8_7__S227_comb


title: CY75_1_CD45_CD8_1__S70_comb


title: CY75_1_CD45_CD8_8__S376_comb


title: CY75_1_CD45_CD8_3__S119_comb


title: CY75_1_CD45_CD8_7__S255_comb


title: CY75_1_CD45_CD8_7__S260_comb


title: CY75_1_CD45_CD8_3__S128_comb


title: CY75_1_CD45_CD8_3__S157_comb


title: CY75_1_CD45_CD8_1__S24_comb


title: CY75_1_CD45_CD8_8__S316_comb


title: CY75_1_CD45_CD8_8__S378_comb


title: CY75_1_CD45_CD8_7__S196_comb


title: CY75_1_CD45_CD8_7__S210_comb


title: CY75_1_CD45_CD8_8__S382_comb


title: CY75_1_CD45_CD8_7__S241_comb


title: CY75_1_CD45_CD8_3__S135_comb


title: CY75_1_CD45_CD8_7__S253_comb


title: CY75_1_CD45_CD8_7__S215_comb


title: CY75_1_CD45_CD8_1__S68_comb


title: CY75_1_CD45_CD8_3__S178_comb


title: CY75_1_CD45_CD8_3__S100_comb


title: CY75_1_CD45_CD8_7__S268_comb


title: CY75_1_CD45_CD8_7__S279_comb


title: CY75_1_CD45_CD8_7__S249_comb


title: CY75_1_CD45_CD8_8__S372_comb


title: CY75_1_CD45_CD8_8__S324_comb


title: CY75_1_CD45_CD8_8__S315_comb


title: CY75_1_CD45_CD8_1__S51_comb


title: CY75_1_CD45_CD8_7__S259_comb


title: CY75_1_CD45_CD8_1__S83_comb


title: CY75_1_CD45_CD8_7__S221_comb


title: CY75_1_CD45_CD8_7__S228_comb


title: CY75_1_CD45_CD8_1__S47_comb


title: CY75_1_CD45_CD8_3__S106_comb


title: CY75_1_CD45_CD8_3__S163_comb


title: CY75_1_CD45_CD8_3__S108_comb


title: CY75_1_CD45_CD8_8__S349_comb


title: CY75_1_CD45_CD8_1__S11_comb


title: CY75_1_CD45_CD8_8__S339_comb


title: CY75_1_CD45_CD8_1__S27_comb


title: CY75_1_CD45_CD8_8__S322_comb


title: CY75_1_CD45_CD8_7__S266_comb


title: CY75_1_CD45_CD8_7__S225_comb


title: CY75_1_CD45_CD8_1__S88_comb


title: CY75_1_CD45_CD8_3__S155_comb


title: CY75_1_CD45_CD8_1__S71_comb


title: CY75_1_CD45_CD8_1__S55_comb


title: CY75_1_CD45_CD8_8__S319_comb


title: CY75_1_CD45_CD8_3__S150_comb


title: CY75_1_CD45_CD8_8__S343_comb


title: CY75_1_CD45_CD8_3__S174_comb


title: CY75_1_CD45_CD8_8__S306_comb


title: CY75_1_CD45_CD8_8__S293_comb


title: CY75_1_CD45_CD8_7__S206_comb


title: CY75_1_CD45_CD8_3__S107_comb


title: CY75_1_CD45_CD8_7__S285_comb


title: CY75_1_CD45_CD8_8__S290_comb


title: CY75_1_CD45_CD8_8__S337_comb


title: CY75_1_CD45_CD8_8__S336_comb


title: CY75_1_CD45_CD8_7__S212_comb


title: CY75_1_CD45_CD8_8__S356_comb


title: CY75_1_CD45_CD8_1__S16_comb


title: CY75_1_CD45_CD8_7__S198_comb


title: CY75_1_CD45_CD8_3__S158_comb


title: CY75_1_CD45_CD8_8__S350_comb


title: CY75_1_CD45_CD8_3__S123_comb


title: CY75_1_CD45_CD8_1__S79_comb


title: CY75_1_CD45_CD8_1__S2_comb


title: CY75_1_CD45_CD8_8__S338_comb


title: CY75_1_CD45_CD8_8__S292_comb


title: CY75_1_CD45_CD8_3__S148_comb


title: CY75_1_CD45_CD8_8__S331_comb


title: CY75_1_CD45_CD8_7__S283_comb


title: CY75_1_CD45_CD8_7__S250_comb


title: CY75_1_CD45_CD8_1__S50_comb


title: CY75_1_CD45_CD8_8__S295_comb


title: CY75_1_CD45_CD8_1__S96_comb


title: CY75_1_CD45_CD8_8__S381_comb


title: CY75_1_CD45_CD8_8__S357_comb


title: CY75_1_CD45_CD8_3__S159_comb


title: CY75_1_CD45_CD8_8__S374_comb


title: CY75_1_CD45_CD8_1__S29_comb


title: CY75_1_CD45_CD8_8__S364_comb


title: CY75_1_CD45_CD8_7__S200_comb


title: CY75_1_CD45_CD8_1__S5_comb


title: CY75_1_CD45_CD8_8__S296_comb


title: CY75_1_CD45_CD8_7__S286_comb


title: monika_A4_S103_comb


title: SS2_G5_S191_comb


title: CY75_1_CD45_CD8_7__S211_comb


title: CY75_1_CD45_CD8_8__S347_comb


title: CY75_1_CD45_CD8_7__S257_comb


title: SS2_A4_S154_comb


title: monika_B9_S117_comb


title: monika_C5_S123_comb


title: monika_F8_S151_comb


title: monika_F9_S152_comb


title: SS2_F6_S185_comb


title: monika_A3_S102_comb


title: CY75_1_CD45_CD8_7__S271_comb


title: SS2_B1_S156_comb


title: SS2_H7_S192_comb


title: monika_D4_S129_comb


title: monika_F10_S145_comb


title: monika_A5_S104_comb


title: SS2_B4_S161_comb


title: monika_D3_S128_comb


title: monika_A12_S100_comb


title: SS2_A12_S153_comb


title: monika_E6_S140_comb


title: SS2_D1_S168_comb


title: SS2_F8_S187_comb


title: monika_B8_S116_comb


title: monika_B3_S112_comb


title: SS2_D2_S170_comb


title: SS2_E7_S180_comb


title: SS2_B10_S157_comb


title: SS2_D8_S174_comb


title: monika_B10_S109_comb


title: SS2_B2_S160_comb


title: SS2_A5_S155_comb


title: monika_A11_S99_comb


title: monika_A10_S98_comb


title: monika_E1_S134_comb


title: SS2_E3_S177_comb


title: monika_E12_S137_comb


title: SS2_G12_S189_comb


title: SS2_F7_S186_comb


title: SS2_E1_S175_comb


title: monika_A6_S105_comb


title: SS2_B7_S162_comb


title: SS2_D4_S172_comb


title: monika_B2_S111_comb


title: SS2_B9_S163_comb


title: monika_E9_S143_comb


title: SS2_E5_S178_comb


title: monika_B6_S114_comb


title: monika_D6_S131_comb


title: SS2_B12_S159_comb


title: SS2_C10_S164_comb


title: monika_F1_S144_comb


title: monika_E10_S135_comb


title: monika_D8_S133_comb


title: monika_B7_S115_comb


title: monika_E2_S138_comb


title: monika_D11_S127_comb


title: SS2_F2_S183_comb


title: SS2_E10_S176_comb


title: monika_F2_S146_comb


title: monika_E5_S139_comb


title: monika_A8_S107_comb


title: monika_C6_S124_comb


title: monika_B11_S110_comb


title: SS2_E8_S181_comb


title: monika_A1_S97_comb


title: SS2_F5_S184_comb


title: monika_F5_S148_comb


title: monika_C9_S125_comb


title: monika_B5_S113_comb


title: monika_C3_S122_comb


title: monika_B1_S108_comb


title: monika_D5_S130_comb


title: SS2_C4_S165_comb


title: monika_E8_S142_comb


title: SS2_F10_S182_comb


title: monika_E11_S136_comb


title: monika_A2_S101_comb


title: SS2_B11_S158_comb


title: SS2_C5_S166_comb


title: monika_C12_S120_comb


title: monika_F4_S147_comb


title: monika_D7_S132_comb


title: monika_F6_S149_comb


title: SS2_G11_S188_comb


title: monika_D1_S126_comb


title: SS2_C8_S167_comb


title: monika_C11_S119_comb


title: monika_F7_S150_comb


title: SS2_D3_S171_comb


title: CY84_PRIM_POS_All_7_A07_S199_comb


title: CY84_PRIM_POS_All_7_A01_S193_comb


title: CY84_PRIM_POS_All_7_D01_S229_comb


title: CY84_PRIM_POS_All_8_C07_S127_comb


title: CY94_CD45NEG_CD90POS_2_D08_S44_comb


title: CY94_CD45NEG_CD90POS_2_F04_S64_comb


title: CY84_PRIM_POS_All_8_A01_S97_comb


title: CY94_CD45NEG_CD90POS_2_D06_S42_comb


title: SS2_G2_S190_comb


title: CY84_PRIM_POS_All_6_E04_S436_comb


title: CY84_PRIM_POS_All_6_A01_S385_comb


title: CY84_PRIM_POS_All_7_E03_S243_comb


title: CY84_PRIM_POS_All_7_F10_S262_comb


title: CY94_CD45NEG_CD90POS_2_C06_S30_comb


title: CY94_CD45NEG_CD90POS_2_C01_S25_comb


title: CY84_PRIM_POS_All_8_B08_S116_comb


title: CY94_CD45NEG_CD90POS_2_C11_S35_comb


title: CY94_CD45NEG_CD90POS_2_B11_S23_comb


title: CY94_CD45NEG_CD90POS_2_E09_S57_comb


title: SS2_E6_S179_comb


title: CY84_PRIM_POS_All_6_E07_S439_comb


title: CY84_PRIM_POS_All_6_D12_S432_comb


title: CY84_PRIM_POS_All_8_A02_S98_comb


title: CY84_PRIM_POS_All_8_E11_S155_comb


title: CY94_CD45NEG_CD90POS_2_A03_S3_comb


title: CY94_CD45NEG_CD90POS_2_E01_S49_comb


title: CY84_PRIM_POS_All_6_C04_S412_comb


title: CY84_PRIM_POS_All_7_B12_S216_comb


title: CY94_CD45NEG_CD90POS_2_F07_S67_comb


title: CY94_CD45NEG_CD90POS_2_F02_S62_comb


title: CY94_CD45NEG_CD90POS_2_F12_S72_comb


title: CY84_PRIM_POS_All_7_E12_S252_comb


title: CY84_PRIM_POS_All_7_F11_S263_comb


title: CY94_CD45NEG_CD90POS_2_F03_S63_comb


title: CY84_PRIM_POS_All_6_H12_S480_comb


title: CY94_CD45NEG_CD90POS_2_C03_S27_comb


title: CY84_PRIM_POS_All_7_A12_S204_comb


title: CY84_PRIM_POS_All_6_A08_S392_comb


title: CY84_PRIM_POS_All_6_A11_S395_comb


title: CY94_CD45NEG_CD90POS_2_G03_S75_comb


title: CY84_PRIM_POS_All_7_B04_S208_comb


title: CY94_CD45NEG_CD90POS_2_E06_S54_comb


title: CY94_CD45NEG_CD90POS_2_F09_S69_comb


title: CY94_CD45NEG_CD90POS_2_F01_S61_comb


title: CY84_PRIM_POS_All_7_G05_S269_comb


title: CY94_CD45NEG_CD90POS_2_B02_S14_comb


title: CY84_PRIM_POS_All_8_G07_S175_comb


title: CY94_CD45NEG_CD90POS_2_D04_S40_comb


title: CY94_CD45NEG_CD90POS_2_A09_S9_comb


title: CY84_PRIM_POS_All_6_G01_S457_comb


title: CY94_CD45NEG_CD90POS_2_D09_S45_comb


title: CY94_CD45NEG_CD90POS_2_B06_S18_comb


title: CY94_CD45NEG_CD90POS_2_G07_S79_comb


title: CY84_PRIM_POS_All_7_H06_S282_comb


title: CY84_PRIM_POS_All_6_D06_S426_comb


title: CY94_CD45NEG_CD90POS_2_G06_S78_comb


title: CY84_PRIM_POS_All_6_G08_S464_comb


title: CY84_PRIM_POS_All_8_H07_S187_comb


title: CY84_PRIM_POS_All_6_C05_S413_comb


title: CY84_PRIM_POS_All_6_C09_S417_comb


title: CY94_CD45NEG_CD90POS_2_A07_S7_comb


title: CY94_CD45NEG_CD90POS_2_A04_S4_comb


title: CY94_CD45NEG_CD90POS_2_B12_S24_comb


title: CY84_PRIM_POS_All_8_D04_S136_comb


title: CY84_PRIM_POS_All_6_C10_S418_comb


title: CY84_PRIM_POS_All_7_F02_S254_comb


title: CY84_PRIM_POS_All_8_B06_S114_comb


title: CY94_CD45NEG_CD90POS_2_G10_S82_comb


title: CY84_PRIM_POS_All_7_F12_S264_comb


title: CY94_CD45NEG_CD90POS_2_F06_S66_comb


title: CY84_PRIM_POS_All_8_E10_S154_comb


title: CY94_CD45NEG_CD90POS_2_E05_S53_comb


title: CY94_CD45NEG_CD90POS_2_D05_S41_comb


title: CY84_PRIM_POS_All_8_B11_S119_comb


title: CY84_PRIM_POS_All_8_E07_S151_comb


title: CY84_PRIM_POS_All_6_A07_S391_comb


title: CY94_CD45NEG_CD90POS_2_C08_S32_comb


title: CY94_CD45NEG_CD90POS_2_C09_S33_comb


title: CY84_PRIM_POS_All_7_B11_S215_comb


title: CY84_PRIM_POS_All_7_H09_S285_comb


title: CY84_PRIM_POS_All_7_E07_S247_comb


title: CY94_CD45NEG_CD90POS_2_E08_S56_comb


title: CY94_CD45NEG_CD90POS_2_A12_S12_comb


title: CY94_CD45NEG_CD90POS_2_A08_S8_comb


title: CY94_CD45NEG_CD90POS_2_F11_S71_comb


title: CY94_CD45NEG_CD90POS_2_B09_S21_comb


title: CY94_CD45NEG_CD90POS_2_B04_S16_comb


title: CY84_PRIM_POS_All_7_D02_S230_comb


title: CY94_CD45NEG_CD90POS_2_A02_S2_comb


title: CY94_CD45NEG_CD90POS_2_D02_S38_comb


title: CY94_CD45NEG_CD90POS_2_H07_S91_comb


title: CY94_CD45NEG_CD90POS_2_B01_S13_comb


title: CY84_PRIM_POS_All_6_G06_S462_comb


title: CY94_CD45NEG_CD90POS_2_A05_S5_comb


title: CY94_CD45NEG_CD90POS_2_B10_S22_comb


title: CY94_CD45NEG_CD90POS_2_G09_S81_comb


title: CY84_PRIM_POS_All_7_B06_S210_comb


title: CY94_CD45NEG_CD90POS_2_F08_S68_comb


title: CY84_PRIM_POS_All_6_B03_S399_comb


title: CY84_PRIM_POS_All_7_C02_S218_comb


title: CY94_CD45NEG_CD90POS_2_C02_S26_comb


title: CY94_CD45NEG_CD90POS_2_G04_S76_comb


title: CY94_CD45NEG_CD90POS_2_A10_S10_comb


title: CY88CD45_150813_F11_S359_comb


title: CY94CD45POS_1_D03_S135_comb


title: CY88CD45_150813_H01_S373_comb


title: CY94CD45POS_1_H07_S187_comb


title: CY94CD45POS_1_H03_S183_comb


title: CY88CD45POS_7_C05_S221_comb


title: CY88CD45_150813_D03_S327_comb


title: CY88CD45_150813_E02_S338_comb


title: CY94CD45POS_1_F06_S162_comb


title: CY88CD45POS_7_E09_S249_comb


title: CY88CD45POS_7_G03_S267_comb


title: CY88CD45POS_7_G04_S268_comb


title: CY88CD45POS_2_G01_S457_comb


title: CY94CD45POS_1_G12_S180_comb


title: CY94CD45POS_1_A11_S107_comb


title: CY88CD45POS_2_C03_S411_comb


title: CY88CD45_150813_B07_S307_comb


title: CY88CD45POS_7_F04_S256_comb


title: CY88CD45POS_7_D09_S237_comb


title: CY94CD45POS_1_E08_S152_comb


title: CY94CD45POS_1_E04_S148_comb


title: CY94CD45POS_1_G09_S177_comb


title: CY88CD45_150813_E08_S344_comb


title: CY88CD45POS_2_B01_S397_comb


title: CY88CD45POS_7_B07_S211_comb


title: CY88CD45POS_2_C01_S409_comb


title: CY88CD45POS_2_H12_S480_comb


title: CY94CD45POS_1_C09_S129_comb


title: CY88CD45POS_2_F05_S449_comb


title: CY88CD45_150813_H10_S382_comb


title: CY88CD45_150813_B09_S309_comb


title: CY88CD45POS_7_B05_S209_comb


title: CY88CD45POS_2_B07_S403_comb


title: CY88CD45POS_2_D09_S429_comb


title: CY94CD45POS_1_C08_S128_comb


title: CY88CD45POS_2_G06_S462_comb


title: CY94CD45POS_1_B12_S120_comb


title: CY88CD45POS_7_B11_S215_comb


title: CY88CD45_150813_F07_S355_comb


title: CY94CD45POS_1_G01_S169_comb


title: CY88CD45_150813_F09_S357_comb


title: CY88CD45POS_2_F11_S455_comb


title: CY88CD45POS_2_G08_S464_comb


title: CY88CD45_150813_D07_S331_comb


title: CY94CD45POS_1_F04_S160_comb


title: CY88CD45POS_2_F09_S453_comb


title: CY88CD45POS_2_B11_S407_comb


title: CY88CD45_150813_B05_S305_comb


title: CY94CD45POS_1_B03_S111_comb


title: CY94CD45POS_1_F07_S163_comb


title: CY88CD45_150813_D05_S329_comb


title: CY88CD45POS_7_E02_S242_comb


title: CY88CD45POS_7_C01_S217_comb


title: CY94CD45POS_1_B04_S112_comb


title: CY88CD45_150813_H11_S383_comb


title: CY88CD45POS_2_G07_S463_comb


title: CY88CD45POS_7_E03_S243_comb


title: CY88CD45_150813_F08_S356_comb


title: CY94CD45POS_1_B07_S115_comb


title: CY88CD45POS_7_C09_S225_comb


title: CY88CD45POS_2_G09_S465_comb


title: CY88CD45POS_7_D07_S235_comb


title: CY88CD45POS_2_C09_S417_comb


title: CY94CD45POS_1_C10_S130_comb


title: CY94CD45POS_1_B01_S109_comb


title: CY88CD45POS_2_F07_S451_comb


title: CY88CD45_150813_G12_S372_comb


title: CY88CD45POS_2_G04_S460_comb


title: CY88CD45POS_2_B05_S401_comb


title: CY94CD45POS_1_D04_S136_comb


title: CY94CD45POS_1_G08_S176_comb


title: CY94CD45POS_1_D06_S138_comb


title: CY88CD45_150813_F05_S353_comb


title: CY88CD45_150813_B11_S311_comb


title: CY94CD45POS_1_E10_S154_comb


title: CY88CD45_150813_B01_S301_comb


title: CY88CD45POS_2_H09_S477_comb


title: CY94CD45POS_1_H06_S186_comb


title: CY88CD45_150813_G08_S368_comb


title: CY94CD45POS_1_F09_S165_comb


title: CY88CD45POS_7_E05_S245_comb


title: CY94CD45POS_1_F12_S168_comb


title: CY88CD45POS_7_F03_S255_comb


title: CY94CD45POS_1_D10_S142_comb


title: CY94CD45POS_1_H04_S184_comb


title: CY94CD45POS_1_A10_S106_comb


title: CY88CD45_150813_C06_S318_comb


title: CY94CD45POS_1_E05_S149_comb


title: CY88CD45POS_2_F03_S447_comb


title: CY88CD45POS_2_E05_S437_comb


title: CY88CD45POS_2_H10_S478_comb


title: CY94CD45POS_1_C06_S126_comb


title: CY88CD45POS_2_G11_S467_comb


title: CY88CD45POS_2_H08_S476_comb


title: CY94CD45POS_1_H12_S192_comb


title: CY94CD45POS_1_A01_S97_comb


title: CY94CD45POS_1_G05_S173_comb


title: CY88CD45_150813_C09_S321_comb


title: CY88CD45_150813_C07_S319_comb


title: CY88CD45POS_7_D02_S230_comb


title: CY94CD45POS_1_A04_S100_comb


title: CY88CD45_150813_D01_S325_comb


title: CY88CD45POS_7_B09_S213_comb


title: CY88CD45POS_7_E07_S247_comb


title: CY88CD45_150813_C01_S313_comb


title: CY88CD45_150813_E05_S341_comb


title: CY94CD45POS_1_E06_S150_comb


title: CY88CD45POS_2_D04_S424_comb


title: CY88CD45POS_7_G02_S266_comb


title: CY88CD45POS_7_F02_S254_comb


title: CY88CD45POS_7_B01_S205_comb


title: CY88CD45_150813_C05_S317_comb


title: CY94CD45POS_1_D12_S144_comb


title: CY94CD45POS_1_E09_S153_comb


title: CY94CD45POS_1_A03_S99_comb


title: CY88CD45_150813_A12_S300_comb


title: CY88CD45POS_2_D02_S422_comb


title: CY88CD45POS_7_H03_S279_comb


title: CY88CD45_150813_H04_S376_comb


title: CY94CD45POS_1_F01_S157_comb


title: CY88CD45_150813_G06_S366_comb


title: CY88CD45POS_7_B03_S207_comb


title: CY88CD45POS_2_B09_S405_comb


title: CY88CD45POS_2_C07_S415_comb


title: CY94CD45POS_1_H11_S191_comb


title: CY94CD45POS_1_C05_S125_comb


title: CY88CD45POS_7_E01_S241_comb


title: CY94CD45POS_1_D01_S133_comb


title: CY94CD45POS_1_C02_S122_comb


title: CY88CD45POS_2_D07_S427_comb


title: CY94CD45POS_1_G07_S175_comb


title: CY88CD45_150813_A01_S289_comb


title: CY88CD45_150813_G11_S371_comb


title: CY94CD45POS_1_C12_S132_comb


title: CY94CD45POS_1_A05_S101_comb


title: CY94CD45POS_1_E07_S151_comb


title: CY88CD45_150813_G09_S369_comb


title: CY88CD45_150813_E11_S347_comb


title: CY88CD45POS_2_C05_S413_comb


title: CY88CD45_150813_C11_S323_comb


title: CY88CD45POS_2_H11_S479_comb


title: CY88CD45_150813_D09_S333_comb


title: CY88CD45_150813_E09_S345_comb


title: CY94CD45POS_1_G10_S178_comb


title: CY94CD45POS_1_C03_S123_comb


title: CY88CD45_150813_H06_S378_comb


title: CY88CD45_150813_G05_S365_comb


title: CY94CD45POS_1_G02_S170_comb


title: CY94CD45POS_1_A02_S98_comb


title: CY88CD45POS_7_H05_S281_comb


title: CY88CD45POS_7_F01_S253_comb


title: CY88CD45POS_7_G05_S269_comb


title: CY94CD45POS_1_H02_S182_comb


title: CY88CD45POS_2_F02_S446_comb


title: CY94CD45POS_1_G04_S172_comb


title: CY88CD45POS_2_F01_S445_comb


title: CY88CD45_150813_F06_S354_comb


title: CY94CD45POS_1_F02_S158_comb


title: CY88CD45POS_7_F07_S259_comb


title: CY88CD45POS_2_D11_S431_comb


title: CY94CD45POS_1_D07_S139_comb


title: CY94CD45POS_1_B09_S117_comb


title: CY94CD45POS_1_H01_S181_comb


title: CY94CD45POS_1_A06_S102_comb


title: CY88CD45POS_2_F06_S450_comb


title: CY88CD45_150813_C02_S314_comb


title: CY94CD45POS_1_C01_S121_comb


title: CY88CD45POS_7_G07_S271_comb


title: CY88CD45_150813_G07_S367_comb


title: CY94CD45POS_1_B06_S114_comb


title: CY94CD45POS_1_F05_S161_comb


title: CY94CD45POS_1_E12_S156_comb


title: CY88CD45_150813_G02_S362_comb


title: CY94CD45POS_1_B02_S110_comb


title: CY88CD45POS_7_F05_S257_comb


title: CY94CD45POS_1_C04_S124_comb


title: CY94CD45POS_1_E02_S146_comb


title: CY88CD45_150813_E06_S342_comb


title: CY88CD45_150813_F03_S351_comb


title: CY94CD45POS_1_H05_S185_comb


title: CY88CD45_150813_E03_S339_comb


title: CY94CD45POS_1_B05_S113_comb


title: CY88CD45POS_7_D05_S233_comb


title: CY94CD45POS_1_A09_S105_comb


title: CY88CD45POS_7_D03_S231_comb


title: CY94CD45POS_1_D09_S141_comb


title: CY88CD45_150813_E01_S337_comb


title: CY88CD45POS_7_D01_S229_comb


title: CY94CD45POS_1_F08_S164_comb


title: CY94CD45POS_1_C07_S127_comb


title: CY88CD45POS_2_D03_S423_comb


title: CY88CD45_150813_B03_S303_comb


title: CY88CD45_150813_F01_S349_comb


title: CY94CD45POS_1_D08_S140_comb


title: CY94CD45POS_1_G11_S179_comb


title: CY88CD45_150813_H12_S384_comb


title: CY94CD45POS_1_H10_S190_comb


title: CY88CD45POS_2_D01_S421_comb


title: CY94CD45POS_1_B10_S118_comb


title: CY94CD45POS_1_A12_S108_comb


title: CY94CD45POS_1_F11_S167_comb


title: CY88CD45POS_7_C03_S219_comb


title: CY94CD45POS_1_D05_S137_comb


title: CY88CD45_150813_H07_S379_comb


title: CY88CD45_150813_D11_S335_comb


title: CY94CD45POS_1_H08_S188_comb


title: CY94CD45POS_1_B11_S119_comb


title: CY94CD45POS_1_H09_S189_comb


title: CY88CD45POS_2_D05_S425_comb


title: CY88CD45POS_2_E09_S441_comb


title: CY88CD45POS_2_G03_S459_comb


title: CY88CD45POS_7_F09_S261_comb


title: CY88CD45_150813_D04_S328_comb


title: CY88CD45POS_2_D06_S426_comb


title: CY88CD45_150813_G04_S364_comb


title: CY94CD45POS_1_F10_S166_comb


title: CY88CD45POS_2_E03_S435_comb


title: CY88CD45POS_2_F04_S448_comb


title: CY94CD45POS_1_E01_S145_comb


title: CY88CD45POS_2_G05_S461_comb


title: CY88CD45_150813_C03_S315_comb


title: CY88CD45POS_2_C11_S419_comb


title: CY94CD45POS_1_D11_S143_comb


title: CY94CD45POS_1_G06_S174_comb


title: CY94CD45POS_1_D02_S134_comb


title: CY88CD45POS_7_C07_S223_comb


title: CY88CD45POS_2_D12_S432_comb


title: cy94_cd45neg_cd90pos_A09_S297_comb


title: CY88CD45POS_2_A06_S390_comb


title: cy94_cd45pos_4_H12_S96_comb


title: cy94_cd45pos_B05_S113_comb


title: cy88_cd45pos_5_C02_S218_comb


title: cy94_cd45neg_cd90pos_H07_S379_comb


title: cy94_cd45pos_G09_S177_comb


title: cy94_cd45pos_A04_S100_comb


title: cy88_cd45pos_5_B05_S209_comb


title: cy94_cd45pos_H02_S182_comb


title: cy94_cd45neg_cd90pos_E06_S342_comb


title: cy94_cd45pos_B09_S117_comb


title: CY88CD45_150813_E07_S343_comb


title: cy94_cd45neg_cd90pos_B07_S307_comb


title: cy94_cd45pos_4_G04_S76_comb


title: cy94_cd45pos_H03_S183_comb


title: cy94_cd45pos_4_G02_S74_comb


title: cy94_cd45pos_F02_S158_comb


title: cy94_cd45pos_4_B04_S16_comb


title: cy94_cd45pos_D01_S133_comb


title: cy94_cd45neg_cd90pos_C02_S314_comb


title: cy94_cd45pos_C02_S122_comb


title: cy94_cd45pos_H12_S192_comb


title: cy94_cd45pos_4_D12_S48_comb


title: cy88_cd45pos_5_D03_S231_comb


title: cy94_cd45pos_C09_S129_comb


title: cy94_cd45pos_4_A03_S3_comb


title: cy94_cd45pos_4_B07_S19_comb


title: cy94_cd45pos_F08_S164_comb


title: cy94_cd45neg_cd90pos_C05_S317_comb


title: cy94_cd45pos_C05_S125_comb


title: cy94_cd45pos_B12_S120_comb


title: cy94_cd45neg_cd90pos_A12_S300_comb


title: cy88_cd45pos_5_E02_S242_comb


title: cy94_cd45pos_B02_S110_comb


title: cy88_cd45pos_5_B02_S206_comb


title: cy94_cd45pos_4_H05_S89_comb


title: cy94_cd45pos_4_C04_S28_comb


title: cy94_cd45pos_H06_S186_comb


title: cy94_cd45pos_F09_S165_comb


title: cy94_cd45neg_cd90pos_G03_S363_comb


title: cy88_cd45pos_5_G03_S267_comb


title: cy94_cd45pos_4_B11_S23_comb


title: cy94_cd45pos_H11_S191_comb


title: cy88_cd45pos_5_G04_S268_comb


title: cy94_cd45pos_4_C03_S27_comb


title: cy94_cd45neg_cd90pos_G11_S371_comb


title: cy94_cd45neg_cd90pos_B08_S308_comb


title: cy94_cd45pos_4_D09_S45_comb


title: cy94_cd45pos_A07_S103_comb


title: cy94_cd45pos_F10_S166_comb


title: cy94_cd45pos_4_A10_S10_comb


title: cy94_cd45neg_cd90pos_G08_S368_comb


title: cy94_cd45pos_4_H11_S95_comb


title: cy94_cd45neg_cd90pos_H02_S374_comb


title: cy94_cd45pos_4_D10_S46_comb


title: cy94_cd45neg_cd90pos_F12_S360_comb


title: cy88_cd45pos_5_D05_S233_comb


title: cy94_cd45neg_cd90pos_D09_S333_comb


title: cy94_cd45pos_4_H10_S94_comb


title: cy94_cd45pos_D09_S141_comb


title: cy94_cd45pos_C01_S121_comb


title: cy94_cd45neg_cd90pos_D05_S329_comb


title: cy94_cd45neg_cd90pos_H03_S375_comb


title: cy94_cd45neg_cd90pos_B02_S302_comb


title: cy94_cd45pos_F12_S168_comb


title: cy94_cd45pos_4_B09_S21_comb


title: cy94_cd45pos_A02_S98_comb


title: cy94_cd45neg_cd90pos_D04_S328_comb


title: cy94_cd45neg_cd90pos_C09_S321_comb


title: cy94_cd45neg_cd90pos_A06_S294_comb


title: cy94_cd45pos_4_H06_S90_comb


title: cy94_cd45pos_B03_S111_comb


title: cy94_cd45pos_4_E06_S54_comb


title: cy94_cd45neg_cd90pos_H09_S381_comb


title: cy94_cd45neg_cd90pos_D12_S336_comb


title: cy94_cd45pos_4_A05_S5_comb


title: cy94_cd45neg_cd90pos_F09_S357_comb


title: cy94_cd45pos_4_G03_S75_comb


title: cy94_cd45neg_cd90pos_A07_S295_comb


title: cy94_cd45neg_cd90pos_D11_S335_comb


title: cy94_cd45pos_4_E05_S53_comb


title: cy94_cd45pos_B08_S116_comb


title: cy94_cd45neg_cd90pos_E04_S340_comb


title: cy94_cd45pos_4_H03_S87_comb


title: cy94_cd45pos_4_H08_S92_comb


title: cy94_cd45neg_cd90pos_F05_S353_comb


title: cy94_cd45pos_C10_S130_comb


title: cy94_cd45pos_H08_S188_comb


title: cy94_cd45pos_G06_S174_comb


title: cy94_cd45pos_4_G12_S84_comb


title: cy94_cd45pos_F11_S167_comb


title: cy94_cd45neg_cd90pos_F07_S355_comb


title: cy94_cd45neg_cd90pos_G12_S372_comb


title: cy94_cd45pos_H10_S190_comb


title: cy94_cd45pos_A08_S104_comb


title: cy94_cd45pos_4_E03_S51_comb


title: cy88_cd45pos_5_E05_S245_comb


title: cy88_cd45pos_5_B03_S207_comb


title: cy94_cd45pos_A12_S108_comb


title: cy94_cd45pos_D11_S143_comb


title: cy94_cd45neg_cd90pos_D01_S325_comb


title: cy94_cd45pos_G07_S175_comb


title: cy94_cd45pos_4_C08_S32_comb


title: cy94_cd45neg_cd90pos_F10_S358_comb


title: cy94_cd45neg_cd90pos_A08_S296_comb


title: cy94_cd45pos_4_H07_S91_comb


title: cy94_cd45pos_H07_S187_comb


title: cy94_cd45pos_B10_S118_comb


title: cy94_cd45pos_4_E09_S57_comb


title: cy94_cd45pos_D03_S135_comb


title: cy94_cd45pos_D10_S142_comb


title: cy94_cd45pos_4_E11_S59_comb


title: cy94_cd45pos_4_C07_S31_comb


title: cy94_cd45pos_4_B08_S20_comb


title: cy94_cd45neg_cd90pos_H08_S380_comb


title: cy94_cd45pos_4_H01_S85_comb


title: cy88_cd45pos_5_E01_S241_comb


title: cy94_cd45pos_4_B12_S24_comb


title: cy94_cd45pos_4_E07_S55_comb


title: cy94_cd45neg_cd90pos_F02_S350_comb


title: cy94_cd45neg_cd90pos_D06_S330_comb


title: cy94_cd45neg_cd90pos_B03_S303_comb


title: cy94_cd45pos_B07_S115_comb


title: cy94_cd45pos_4_D04_S40_comb


title: cy94_cd45neg_cd90pos_D07_S331_comb


title: cy94_cd45pos_4_G01_S73_comb


title: cy94_cd45pos_4_G09_S81_comb


title: cy94_cd45neg_cd90pos_C11_S323_comb


title: cy94_cd45pos_4_E08_S56_comb


title: cy94_cd45pos_A03_S99_comb


title: cy94_cd45pos_4_G10_S82_comb


title: cy94_cd45pos_4_A06_S6_comb


title: cy94_cd45pos_D02_S134_comb


title: cy94_cd45pos_G01_S169_comb


title: cy94_cd45pos_H01_S181_comb


title: cy94_cd45neg_cd90pos_D03_S327_comb


title: cy94_cd45neg_cd90pos_C04_S316_comb


title: cy94_cd45neg_cd90pos_H01_S373_comb


title: cy94_cd45pos_G05_S173_comb


title: cy94_cd45neg_cd90pos_G02_S362_comb


title: cy94_cd45pos_4_A01_S1_comb


title: cy94_cd45pos_G04_S172_comb


title: cy94_cd45pos_4_A09_S9_comb


title: cy94_cd45pos_4_G06_S78_comb


title: cy94_cd45neg_cd90pos_E10_S346_comb


title: cy88_cd45pos_5_B01_S205_comb


title: cy94_cd45pos_G12_S180_comb


title: cy94_cd45neg_cd90pos_F08_S356_comb


title: cy94_cd45pos_4_H04_S88_comb


title: cy94_cd45pos_G02_S170_comb


title: cy94_cd45pos_G08_S176_comb


title: cy88_cd45pos_5_D02_S230_comb


title: cy88_cd45pos_5_D01_S229_comb


title: cy94_cd45pos_A01_S97_comb


title: cy88_cd45pos_5_E04_S244_comb


title: cy94_cd45neg_cd90pos_F11_S359_comb


title: cy88_cd45pos_5_G02_S266_comb


title: cy94_cd45neg_cd90pos_A01_S289_comb


title: cy94_cd45pos_4_A04_S4_comb


title: cy94_cd45pos_B04_S112_comb


title: cy94_cd45pos_4_H09_S93_comb


title: cy94_cd45pos_4_C01_S25_comb


title: cy94_cd45pos_H09_S189_comb


title: cy94_cd45pos_4_C02_S26_comb


title: cy94_cd45neg_cd90pos_F01_S349_comb


title: cy94_cd45pos_4_C06_S30_comb


title: cy94_cd45pos_4_C11_S35_comb


title: cy94_cd45pos_A09_S105_comb


title: cy94_cd45pos_D08_S140_comb


title: cy94_cd45pos_4_A02_S2_comb


title: cy94_cd45pos_4_D08_S44_comb


title: cy94_cd45pos_B11_S119_comb


title: cy94_cd45pos_G10_S178_comb


title: cy94_cd45pos_B06_S114_comb


title: cy94_cd45pos_4_B06_S18_comb


title: cy94_cd45neg_cd90pos_B04_S304_comb


title: cy94_cd45neg_cd90pos_G05_S365_comb


title: cy94_cd45pos_D06_S138_comb


title: cy94_cd45pos_C04_S124_comb


title: cy94_cd45pos_4_E10_S58_comb


title: cy94_cd45pos_D05_S137_comb


title: cy94_cd45pos_H04_S184_comb


title: cy94_cd45neg_cd90pos_C03_S315_comb


title: cy94_cd45pos_4_D07_S43_comb


title: cy94_cd45neg_cd90pos_D02_S326_comb


title: cy88_cd45pos_5_C03_S219_comb


title: cy94_cd45pos_A10_S106_comb


title: cy94_cd45neg_cd90pos_H11_S383_comb


title: cy94_cd45pos_4_D06_S42_comb


title: cy94_cd45pos_F01_S157_comb


title: cy94_cd45pos_D04_S136_comb


title: cy94_cd45pos_C08_S128_comb


title: cy94_cd45pos_4_G08_S80_comb


title: cy94_cd45neg_cd90pos_B12_S312_comb


title: cy88_cd45pos_5_F05_S257_comb


title: cy94_cd45pos_4_D01_S37_comb


title: cy94_cd45pos_A06_S102_comb


title: cy94_cd45neg_cd90pos_E12_S348_comb


title: cy94_cd45pos_C11_S131_comb


title: cy94_cd45pos_4_H02_S86_comb


title: cy88_cd45pos_5_C01_S217_comb


title: cy94_cd45neg_cd90pos_F04_S352_comb


title: cy94_cd45neg_cd90pos_A10_S298_comb


title: cy94_cd45pos_4_G11_S83_comb


title: cy94_cd45pos_4_D02_S38_comb


title: cy94_cd45pos_4_C09_S33_comb


title: cy94_cd45pos_F03_S159_comb


title: cy94_cd45neg_cd90pos_A11_S299_comb


title: cy94_cd45pos_4_B03_S15_comb


title: cy94_cd45pos_4_E04_S52_comb


title: cy94_cd45pos_B01_S109_comb


title: cy94_cd45pos_A11_S107_comb


title: cy94_cd45neg_cd90pos_E05_S341_comb


title: cy94_cd45pos_4_B10_S22_comb


title: cy94_cd45neg_cd90pos_H04_S376_comb


title: cy94_cd45pos_4_E12_S60_comb


title: cy94_cd45neg_cd90pos_B11_S311_comb


title: cy94_cd45pos_F05_S161_comb


title: cy94_cd45pos_4_E02_S50_comb


title: cy94_cd45pos_D12_S144_comb


title: cy94_cd45neg_cd90pos_C10_S322_comb


title: cy94_cd45pos_F07_S163_comb


title: cy94_cd45neg_cd90pos_G06_S366_comb


title: cy94_cd45pos_4_G07_S79_comb


title: cy88_cd45pos_5_C05_S221_comb


title: cy94_cd45pos_F04_S160_comb


title: cy94_cd45neg_cd90pos_E08_S344_comb


title: cy94_cd45pos_4_D11_S47_comb


title: cy94_cd45pos_D07_S139_comb


title: cy94_cd45pos_C03_S123_comb


title: cy94_cd45pos_G11_S179_comb


title: cy94_cd45neg_cd90pos_H12_S384_comb


title: cy94_cd45neg_cd90pos_H06_S378_comb


title: cy94_cd45neg_cd90pos_G07_S367_comb


title: cy94_cd45pos_A05_S101_comb


title: cy94_cd45neg_cd90pos_E02_S338_comb


title: cy88_cd45pos_5_E03_S243_comb


title: cy88_cd45pos_5_F03_S255_comb


title: cy94_cd45pos_4_E01_S49_comb


title: CY75_1FNA_B01_S493_comb


title: cy94_cd45neg_cd90pos_E11_S347_comb


title: CY89FNAQ2_A09_S393_comb


title: cy94_cd45neg_cd90pos_G04_S364_comb


title: cy94_cd45pos_C12_S132_comb


title: cy94_cd45pos_4_D05_S41_comb


title: cy94_cd45pos_4_C10_S34_comb


title: cy94_cd45pos_G03_S171_comb


title: CY89COREQ1_C01_S313_comb


title: CY89COREQ1_B03_S303_comb


title: CY75_1FNA_G06_S558_comb


title: cy94_cd45pos_C07_S127_comb


title: CY89FNA_G07_S271_comb


title: CY89COREQ1_A09_S297_comb


title: CY89COREQ1_C07_S319_comb


title: CY89CORE11_E02_S146_comb


title: CY89COREQ1_G09_S369_comb


title: CY89COREQ1_A07_S295_comb


title: cy88_cd45pos_5_F04_S256_comb


title: CY89NEG_G11_S83_comb


title: cy94_cd45neg_cd90pos_D08_S332_comb


title: CY89NEG_C04_S28_comb


title: CY89CORE11_A10_S106_comb


title: CY89NEG_H12_S96_comb


title: CY89NEG_F06_S66_comb


title: CY89FNA_C04_S220_comb


title: CY89NEG_E10_S58_comb


title: CY89FNA_E01_S241_comb


title: CY89CORE11_F06_S162_comb


title: CY89NEG_G07_S79_comb


title: CY89NEG_A08_S8_comb


title: CY89CORE11_C02_S122_comb


title: CY89CORE11_E08_S152_comb


title: CY89CORE11_G05_S173_comb


title: CY89NEG_F12_S72_comb


title: CY89COREQ1_F08_S356_comb


title: CY89COREQ1_A06_S294_comb


title: CY89COREQ1_F04_S352_comb


title: CY89FNAQ2_C08_S416_comb


title: CY89NEG_D08_S44_comb


title: CY89COREQ1_G01_S361_comb


title: CY75_1FNA_G01_S553_comb


title: CY89FNA_F03_S255_comb


title: CY89COREQ1_C08_S320_comb


title: CY89NEG_E04_S52_comb


title: CY89COREQ1_C10_S322_comb


title: CY89FNAQ2_F08_S452_comb


title: CY89COREQ1_D07_S331_comb


title: CY89COREQ1_E03_S339_comb


title: CY75_1FNA_G04_S556_comb


title: CY75_1FNA_G03_S555_comb


title: CY89CORE11_D03_S135_comb


title: CY89CORE11_G11_S179_comb


title: CY89CORE11_B07_S115_comb


title: CY89NEG_G05_S77_comb


title: CY89FNAQ2_A06_S390_comb


title: CY89FNAQ2_E09_S441_comb


title: CY89COREQ1_G05_S365_comb


title: CY75_1FNA_H03_S567_comb


title: CY89FNAQ2_C12_S420_comb


title: CY89COREQ1_H10_S382_comb


title: CY89FNAQ2_A11_S395_comb


title: CY89COREQ1_E12_S348_comb


title: CY89COREQ1_G10_S370_comb


title: CY75_1FNA_A12_S492_comb


title: CY75_1FNA_F12_S552_comb


title: CY75_1FNA_E09_S537_comb


title: CY89COREQ1_F06_S354_comb


title: CY89FNAQ2_G02_S458_comb


title: CY89FNAQ2_D09_S429_comb


title: CY89CORE11_G10_S178_comb


title: CY75_1FNA_F06_S546_comb


title: CY89NEG_C08_S32_comb


title: CY89CORE11_D04_S136_comb


title: CY89CORE11_H03_S183_comb


title: CY75_1FNA_F10_S550_comb


title: CY89NEG_H10_S94_comb


title: CY89FNA_F07_S259_comb


title: CY75_1FNA_E03_S531_comb


title: CY89NEG_B08_S20_comb


title: CY89COREQ1_G06_S366_comb


title: CY75_1FNA_F07_S547_comb


title: CY89FNA_B08_S212_comb


title: CY89NEG_H01_S85_comb


title: CY89FNAQ2_H05_S473_comb


title: CY75_1FNA_H11_S575_comb


title: CY89NEG_C02_S26_comb


title: CY89COREQ1_D12_S336_comb


title: CY89COREQ1_D02_S326_comb


title: CY89COREQ1_H01_S373_comb


title: CY89CORE11_G06_S174_comb


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title: CY89A_CD45_POS_4_D02_S422_comb


title: CY89A_CD45_POS_10_B02_S206_comb


title: CY89A_CD45_POS_4_E11_S443_comb


title: CY89A_CD45_POS_10_C12_S228_comb


title: CY89A_CD45_POS_6_H05_S185_comb


title: CY89A_CD45_POS_10_C11_S227_comb


title: CY89A_CD45_POS_6_B11_S119_comb


title: D3

status: Public on Aug 11 2015

city: Salamanca

first: Jesús

last: Pérez Losada

address: Campus Miguel de Unamuno

department: Centro de inv. del Cáncer (CIC).

institute: Inst. de Inv. Biomédica de Salamanca (IBSAL). H. U. de Salamanca. Inst. de Biología Molecular y Celular del Cáncer (IBMCC).

description:
origin: D3 is a spindle cell carcinoma from a multiple DMBA treated M. spretus X CBA F1hybrid mouse. B9, A5 and D3 were derived from the same tumor and are clonnaly related
Burns PA, et al.,. Loss of heterozygosity and mutational alterations of the p53 gene in skin tumours of interspecific hybrid mice. Oncogene. 1991 Dec;6(12):2363-9. PubMed PMID: 1766680.

hyb_protocol: Samples were heated at 95º C in darkness, hybridized, and washed with the robotic HS 4800 Pro system (Tecan®).

scan_protocol: Fluorescence was scanned with a GenePix 4000B (Axon Instruments™) microarray scanner. Raw data processing was performed with the ExiMiR package from R

data_processing: Image processing was accomplished with the Gene Prix Pro (v 6.0), and data processing was performed with the ExiMiR package for R (Gubian S, 2012; RDevelopment-Core-Team, 2010).

organism: Mus musculus x Mus spretus

source_name: Spindle skin cancer cell line

label_protocol: 1µg of total RNA was labelled with the Exiqon Kit protocol following the manufacturer´s instructions.

growth_protocol: Cells were cultured in DMEM supplemented with 10% foetal bovine serum (FBS), 1% penicillin-streptomycin and 4 mM L-glutamine at 37ºC and 5% of CO2.

extract_protocol: Total RNAs were isolated using the Qiagen™ kit (miRNA easy) following the manufacturer’s instructions

tag: phenotype

value: malignant spindle


title: A5_rep2

description:
origin: A5 is a spindle cell carcinoma from a multiple DMBA treated M. spretus X CBA F1hybrid mouse. B9, A5 and D3 were derived from the same tumor and are clonnaly related
Burns PA, et al.,. Loss of heterozygosity and mutational alterations of the p53 gene in skin tumours of interspecific hybrid mice. Oncogene. 1991 Dec;6(12):2363-9. PubMed PMID: 1766680.


title: PDVC57

description:
origin: PDVC57 was established from a tumor resulting from injection of PDV cells into C57BI mice. PDV cells were derived by in vitro transformation with DMBA of primary keratinocytes from C57B1 mice
Quintanilla M, et al.,. Carcinogen-specific mutation and amplification of Ha-ras during mouse skin carcinogenesis. Nature. 1986 Jul 3-9;322(6074):78-80. PubMed PMID: 3014349.

organism: Mus musculus

source_name: Squamous skin cancer cell line

value: malignant squamous


title: E4

description:
origin: E4 cells are single cell clones from SN161, derived from a lymph node metastasis of an F1:129/NIH mouse. E4 and H11 were derived from the same tumor and are clonnaly related
Bremner R, Balmain A. Genetic changes in skin tumor progression: correlation between presence of a mutant ras gene and loss of heterozygosity on mouse chromosome 7. Cell. 1990 May 4;61(3):407-17. PubMed PMID: 2185890.


title: H11

description:
origin: H11 cells are single cell clones from SN161, derived from a lymph node metastasis of an F1.129/NIH mouse. E4 and H11 were derived from the same tumor and are clonnaly related
Bremner R, Balmain A. Genetic changes in skin tumor progression: correlation between presence of a mutant ras gene and loss of heterozygosity on mouse chromosome 7. Cell. 1990 May 4;61(3):407-17. PubMed PMID: 2185890.


title: CARB

description:
origin: CarB and CarC are highly aggressive spindle cell carcinomas isolated from NIH/Swiss mice after DMBA/TPA treatment.
Quintanilla M, Brown K, Ramsden M, Balmain A. Carcinogen-specific mutation and amplification of Ha-ras during mouse skin carcinogenesis. Nature. 1986 Jul 3-9;322(6074):78-80. PubMed PMID: 3014349.

value: CARB


title: A5_rep1


title: P6

description:
origin: P6 is a papilloma line isolated from DMBA/TPA-treated Mus spretus X CBA
Haddow S, et al., Loss of growth control by TGF-beta occurs at a late stage of mouse skin carcinogenesis and is independent of ras-gene activation. Oncogene. 1991 Aug;6(8):1465-70.  PubMed PMID: 1886717.

source_name: Papilloma cell line

value: squamous non-malignant


title: CARC

value: CARC


title: control siRNA, IFN-γ

status: Public on Jan 21 2016

city: Suwon

first: jeehoon

last: lee

state: Gyoungido

address: San5, Woncheondong

department: Pharmacology

country: South Korea

institute: Ajou university, School of Medicine

description:
Gene expression data from IFN-γ-treated astrocytes that were control siRNA transfected
si-con+IFN-γ

hyb_protocol: Approximately 5.5 μg of labeled DNA target was hybridized to the Affymetrix GeneChip Array at 45°C for 16hour

scan_protocol: Hybridized arrays were washed and stained on a GeneChip Fluidics Station 450 and scanned on a GCS3000 Scanner (Affymetrix).

data_processing: Array data export processing and analysis was performed using Affymetrix® GeneChip Command Console® Software (AGCC)

organism: Rattus norvegicus

label_protocol: The sense cDNA was then fragmented and biotin-labeled with TdT (terminal deoxynucleotidyl transferase) using the GeneChip WT Terminal labeling kit

growth_protocol: Primary astrocytes were prepared by trypsinization. To deplete microglia and meningeal cells, astrocytes were incubated with serum-free MEM for 2 days before use

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Astrocytes transfect with control siRNA or SHP siRNA and treated with IFN-γ in the presence or absence of GW for 3 h

tag: strain

value: Sprague-Dawley

value: 1 day-old

value: cerebral cortex

value: astrocytes

tag: protocol

value: control siRNA transfection

value: IFN-γ


title: SHP siRNA, IFN-γ, GW

description:
Gene expression data from IFN-γ- and GW-treated astrocytes that were SHP siRNA transfected
si-SHP+IFN-γ+GW

value: SHP siRNA transfection

value: IFN-γ and GW


title: control siRNA, IFN-γ, GW

description:
Gene expression data from IFN-γ- and GW-treated astrocytes that were control siRNA transfected
si-con+IFN-γ+GW


title: ear fetus at 13.5 dpc, biological rep3

status: Public on Dec 31 2015

city: Mexico

first: Sara

last: Frias

state: Distrito Federal

address: Insurgentes Sur 3700-C 6o piso

department: Investigación en Genetica Humana/Medicina, Genómica y Toxicología Ambiental

country: Mexico

institute: Instituto Nacional de Pediatría/Instituto de Investigaciones Biomedicas, UNAM

description:
miRNA expression data from external ear (pinnae) at 13.5 dpc
total RNA including short RNAs (<200nt)

hyb_protocol: Denaturalized samples were placed to a GeneChip miRNA Array 3.0 and hybridized at 48°C and 60 rpm for 17 hours in an Affymetrix Hybridization Oven 645; stained and washed in the Affymetrix GeneChip Fluidic Station 450.

scan_protocol: GeneChip miRNA Array 3.0 were scanned using the Affymetrix GeneChip Scanner 3000 HR

data_processing: The array data were normalized by global normalization using the miRNA QC Tool of the Expression Console software (Affymetrix). Transcriptome Analysis Console software (Affymetrix) was used to identify differentially expressed miRNAs at each stage and for the  hierarchical clustering analysis.

source_name: One litter of Mus musculus fetus (13.5 dpc)

label_protocol: Total RNA including short RNAs was labeled with the kit FlashTag ® Biotin HSR (Genisphere/Affymetrix, Santa Clara, CA, USA) according  to manufacturer's instrucions; ) the labeling efficiency was tested with the Enzyme Linked Oligosorbent Assay (ELOSA) QC Assay.

growth_protocol: Scheduled mattings were carried out in order to obtain fetus at specific developmental stages, gestational age of the fetus was determined by the day of appearance of the vaginal plug (0.5 dpc) and confirmed by morphological criteria.

extract_protocol: Total RNA extraction including short RNAs (<200nt) was performed with RNA Mini elute kit (Qiagen) according to manufacturer's protocol.

treatment_protocol: Pregnant females were sacrificed at 13.5 dpc or 14.5 dpc, the fetus were dissected, external ear –pinna- and skin from the back tissues were dissected in iced cooled PBS nuclease free under stereomicroscope and kept in RNAlater (Ambion) at -80°C until their processing.

value: External ear (pinna)


title: control siRNA

description:
Gene expression data from control siRNA transfected astrocytes
si-con

source_name: control siRNA transfected astrocytes

value: control


title: back fetus at 14.5 dpc, biological rep2

description:
miRNA expression data from skin from the back at 14.5 dpc
total RNA including short RNAs (<200nt)

source_name: One litter of Mus musculus fetus (14.5 dpc)

value: Skin from the back


title: back fetus at 13.5 dpc, biological rep1

description:
miRNA expression data from skin from the back at 13.5 dpc
total RNA including short RNAs (<200nt)


title: ear fetus at 14.5 dpc, biological rep2

description:
miRNA expression data from external ear (pinnae) at 14.5 dpc
total RNA including short RNAs (<200nt)


title: back fetus at 13.5 dpc, biological rep2


title: ear fetus at 14.5 dpc, biological rep3


title: back fetus at 14.5 dpc, biological rep1


title: C50

description:
origin: C50 cells are an immortalized murine keratinocyte cell line
Plumb M, Telliez JB, Fee F, Daubersies P, Bailleul B, Balmain A. Structural analysis of the mouse c-Ha-ras gene promoter. Mol Carcinog. 1991;4(2):103-11. PubMed PMID: 2043251.

source_name: Immortalized keratinocytes


title: ear fetus at 14.5 dpc, biological rep1


title: back fetus at 13.5 dpc, biological rep3


title: NK

description:
origin: NK cells are spontaneously immortalized keratinocytes derived from a p53 null mouse.
Linardopoulos S, et al., Deletion and altered regulation of p16INK4a and p15INK4b in undifferentiated mouse skin tumors. Cancer Res. 1995 Nov 15;55(22):5168-72. PubMed PMID: 7585567.

value: NK


title: C5N

description:
origin: C5N is a nontumongenic immortalized cell line isolated by single cell cloning of MCA3D cells (premalignang keratinocytes)  derived from a BALB/c mouse.
Kulesz-Martin M, et al. Properties of carcinogen altered mouse epidermal cells resistant to calcium-induced terminal differentiation. Carcinogenesis. 1983 Nov;4(11):1367-77. PubMed PMID: 6196137.


title: ear fetus at 13.5 dpc, biological rep2


title: MSCP1

description:
origin: MSC P1  is a papilloma line isolated from DMBA/TPA-treated Mus spretus X CBA F1 hybrid mice
Haddow S, et al., Loss of growth control by TGF-beta occurs at a late stage of mouse skin carcinogenesis and is independent of ras-gene activation. Oncogene. 1991 Aug;6(8):1465-70. PubMed PMID: 1886717.


title: ear fetus at 13.5 dpc, biological rep1


title: H3K4me3_aggregate_mouse

status: Public on Oct 09 2015

city: Bethesda

first: Ian

last: Fingerman

state: MD

address: 45 Center Dr.

department: NCBI Epigenomics

country: USA

institute: National Institutes of Health

description: mouse ENCODE H3K4me3, aggregate track (aggregate of 24 tracks from various mouse primary tissues, primary cells and immortalized cell lines)

library_source: genomic

data_processing:
Experiments from Mouse ENCODE were first converted from bigWig files to wig files using a publically available script. Each input track was normalized by scaling all values to achieve a constant genome-wide summed signal. In the final track, the value in each 20 bp window is the arithmetic mean of the scaled input values.  Aggregate track was remapped to GRCm38 assembly using the NCBI Genome Remapping Service.
Genome_build: MGSCv37: H3K4me3_aggregate_mouse.wig.gz
Genome_build: GRCm38: H3K4me3_aggregate_mouse_GRCm38.wig.gz
Supplementary_files_format_and_content: WIG files generated by track averaging

extract_protocol:
Refer to extraction protocols described in the individual sample inputs for each average track
Refer to library contruction protocols described in the individual sample inputs for each average track

tag: tissue type


title: B9

description:
origin: B9 is a squamous cell carcinoma from a multiple DMBA treated M. spretus X CBA F1hybrid mouse. B9, A5 and D3 were derived from the same tumor and are clonnaly related
Burns PA, et al.,. Loss of heterozygosity and mutational alterations of the p53 gene in skin tumours of interspecific hybrid mice. Oncogene. 1991 Dec;6(12):2363-9. PubMed PMID: 1766680.


title: Sus064

status: Public on Aug 12 2014

city: Cardiff

first: Peter

last: Ghazal

address: Sir Geraint Evans Building, Academic Avenue

department: Systems Immunity University Research Institute

country: United Kingdom

institute: Cardiff University

description: Suspected Infected Test Set

hyb_protocol: 10ug of biotinylated cRNA was hybridised overnight at 37oC in 260ul hybridisation mix as described in the standard CodeLink hybridization protocol ( http://www.appliedmicroarrays.com/back_up/CodeLink.html )

scan_protocol: The bioarrays are then dried and scanned on the Agilent G2567A scanner at 5 um resolution using a standard CodeLink scanning protocol ( http://www.appliedmicroarrays.com/back_up/CodeLink.html ).

data_processing: Raw data were obtained from the scanned images using CodeLinkTM EXPv4.1 (GE Healthcare) feature extraction software. Subsequent data validation comprising data quality control and normalisation involved the use of the statistical software package R/Bioconductor. Raw scan data were background subtracted and subsequently normalised using the Robust Multi-array Average (RMA) method.

source_name: peripheral blood

label_protocol: Biotinylated cRNA were prepared using a linear amplification method using tailed oligo dT priming of total RNA. 500ng of total RNA was used with the manual target preparation protocol from Codelink Expression Bioarray System (GE/Amersham Biosciences). Double stranded cDNA synthesis was performed with a T7oligo (dT) primer, containing a T7 RNA polymerase promoter site added to the 3’. The cDNA is used as a template for in vitro transcription with biotin labeled nucleotides and the labeled cRNA used for hybridization ( http://www.appliedmicroarrays.com/back_up/CodeLink.html ).

extract_protocol: RNA was extracted from whole blood samples with PAXgene blood RNA reagent, followed by clean-up and DNase I treatment with QIAGEN PAXgene blood RNA kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

value: peripheral blood

tag: corrected gestational age (weeks+days)

value: Female

tag: on antibiotics at time of sample

value: No

tag: bloodculture result

value: negative

tag: other positive results

value: ET tip and eye swabs positive for Ecoli

tag: birthweight (g)


title: Sus074

description: Suspected Infected Test Set

value: no


title: PTC BRAF mut 6

status: Public on Feb 16 2015

description:
Sample name: TM-279-08R
Gene expression data from PTC with a BRAF mutation

data_processing: Data were generated using the Affymetrix Expression Console Software using Affymetrix default analysis settings. Data were RMA normalized and analyzed with Partek Genomics Suite 6.5.

source_name: PTC histology

label_protocol: Biotinylated cRNAs were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Total RNA from biospecimens was extracted using the Quagen RNeasy mini kit according to the manufacturer's instructions and integrity of RNA was checked using the Agilent Bioanalyzer.

tag: braf status

value: BRAFmutant

value: PTC with a BRAF mutation


title: Sus055

description: Suspected Infected Test Set

tag: tissue


title: Sus053

description: Suspected Infected Test Set


title: FVPTC 2

description:
Sample name: TM-301-12R
Gene expression data from FVPTC

source_name: FVPTC histology

value: BRAF wild type

value: FVPTC


title: Sus057

description: Suspected Infected Test Set


title: DS 1

status: Public on Jul 24 2015

city: London

first: Robert

last: Lowe

address: 4 Newark Street

department: Blizard Institute

institute: QMUL

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: Data was normalised and VST transformed using lumi

source_name: HMEC

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

growth_protocol: Normal finite life span HMECs were obtained from reduction mammoplasty tissue of a 21-year-old individual, specimen 184, and were cultured as previously described (Garbe et al., 2009). Independent cultures were serially passaged from passage 6 (early proliferating, EP cells) through to deep senescence (DS cells). DS cultures underwent no further expansion upon at least two serial passages. The DS cells in our experiments displayed the key characteristics of cellular senescence. All experiments were done on three individual cultures of EP and DS cells, passaged from single progenitor plates.

extract_protocol: Total RNA was isolated using the Qiagen RNeasy kit (Qiagen Inc).

treatment_protocol: HMECs were transfected with 60nM siGLO siRNA (Dharmacon) in 384-well or 6-well plates using Dharmafect3 (Dharmacon)

tag: Sex

value: F

tag: cell stage

value: deep senescence


title: Sus039

description: Suspected Infected Test Set

tag: gender

value: Male


title: Sus059

description: Suspected Infected Test Set


title: Sus035

description: Suspected Infected Test Set


title: Sus027

description: Suspected Infected Test Set


title: Sus033

description: Suspected Infected Test Set


title: Sus038

description: Suspected Infected Test Set


title: Sus044

description: Suspected Infected Test Set


title: Sus026

description: Suspected Infected Test Set


title: Sus061

description: Suspected Infected Test Set


title: Sus068

description: Suspected Infected Test Set


title: Sus054

description: Suspected Infected Test Set


title: Sus034

description: Suspected Infected Test Set

value: no, 2 days later had serratia marcesens in ET secretions


title: Sus037

description: Suspected Infected Test Set

value: over previous 5 days had coliforms and S.aureus in NP/ET secretions


title: Sus025

description: Suspected Infected Test Set


title: Sus041

description: Suspected Infected Test Set


title: Sus020

description: Suspected Infected Test Set


title: Sus024

description: Suspected Infected Test Set


title: Sus013

description: Suspected Infected Test Set


title: Sus036

description: Suspected Infected Test Set


title: Sus019

description: Suspected Infected Test Set


title: Sus010

description: Suspected Infected Test Set


title: Inf155

description: Validation Test Set

value: Klebsiella pneumoniae


title: Con179

description: Validation Test Set


title: Con014

description: Validation Test Set


title: Con006

description: Validation Test Set


title: Sus011

description: Suspected Infected Test Set

value: right eye swab coag neg staph (likely colonisation), csf negative


title: Sus008

description: Suspected Infected Test Set

value: peripheral blood


title: Sus005

description: Suspected Infected Test Set


title: Inf118

description: Validation Test Set

value: Coagulase -ve Staph. Aureus

value: CSF negative


title: Inf164

description: Platform Test Set

value: Female

value: Yes

value: positive(kelbsiella oxytoca)

value: not stated


title: Inf152

description: Platform Test Set

value: positive(coag neg staph)

value: blood culture 3 days previous 2 strains coag neg staph, line tip 2 days previous mixed coag neg staph


title: Inf032

description: Validation Test Set

value: No

value: negative

value: yes CSF grew Listeria monocytogenes, CSF white cell count 551, RBC 119, urine no growth


title: Inf161

description: Validation Test Set

value: Male

value: Klebsiella oxytoca

value: csf klebsiella oxytoca but blood stained


title: Sus002

description: Suspected Infected Test Set

value: no


title: Inf191

description: Platform Test Set

value: positive(E coli)

value: csf no growth


title: Inf159

description: Platform Test Set

value: peripheral blood

value: positive(enterococcus)

value: csf 1 no growth, 2 coag neg staph


title: Inf012

description: Validation Test Set

value: Female

value: CSF:enterovirus on PCR.  CSF also grew coag neg staph, CSF WCC 300, RBC 9


title: Inf132

description: Platform Test Set

value: Yes

value: Positive (E faecalis)

value: blood culture 2 and 4 days previously and next day also enterococcus


title: Inf125

description: Platform Test Set

value: Postive (coag neg staph)

value: blood culture 5 days previous grew coag neg staph


title: Inf198

description: Platform Test Set

value: No

value: positive(coag neg staph)

value: csf no growth, note CoNeg Staph resistant to fluclox and gent which baby on further deterioration and repeat sample though…


title: Inf137

description: Validation Test Set

value: Male

value: Coagulase -ve Staph. Aureus

value: long line tip also coag neg staph, coag neg staph from blood culture 6 days previously


title: Inf138

description: Platform Test Set

value: Positive (coag neg staph)


title: Inf091

description: Platform Test Set

value: peripheral blood

value: Positive (Group B Strep)

value: CSF negative


title: Inf089

description: Platform Test Set

value: positive (coag neg staph)

value: CSF and urine negative


title: Inf112

description: Platform Test Set

value: Female

value: Positive(group B strep)

value: CSF coag neg staph


title: Inf114

description: Platform Test Set

value: Positive(coag neg staph)

value: long line tip coag neg staph, previous day ETT tip and ETS Ecoli/coliforms


title: Inf107

description: Validation Test Set

value: Yes

value: BC next day also coag neg staph and line tip 2 days later.  ETS refer back to sample from 2 days previous where positive for ureaplasma and mycoplasma.


title: Inf084

description: Platform Test Set

value: CSF coag neg staph.  Also from day before long line tip and BC grew coag neg staph


title: Inf102

description: Platform Test Set

value: Positive (pseudomonas aeuruginosa and coag neg staph)

value: Blood culture positive for pseudomonas and coag neg staph, coag neg staph also present in blood cultures x 2 in previous week and also the next day


title: Inf162

description: Platform Test Set

value: Male

value: No

value: positive(coag neg staph)

value: 2 separate blood cultures coag neg staph, csf no growth


title: Inf082

description: Platform Test Set

value: peripheral blood

value: positive (enterobacter cloacae)

value: enterobacter cloacae (also 1 week post sample)


title: Con202

description: Platform Test Set


title: Con165

description: Platform Test Set

value: Female


title: Con087

description: Platform Test Set


title: Con079

description: Platform Test Set


title: Inf198

description: set:Training Set

data_processing: Raw scan data were background subtracted, VST transformed and subsequently robust spline normalised as performed by the lumi package of Bioconductor.  Array probe features that had a present count in one or more samples were retained.

tag: neonate

value: infected

value: csf no growth, note CoNeg Staph resistant to fluclox and gent which baby on further deterioration and repeat sample though…


title: Con072

description: Platform Test Set


title: Inf159

description: set:Training Set

value: positive(enterococcus)

value: csf 1 no growth, 2 coag neg staph


title: Con096

description: Platform Test Set


title: Inf162

description: set:Training Set


title: Con073

description: Platform Test Set

value: well. 3 days later had Saureus in wound swab.


title: Inf191

description: set:Training Set

value: positive(E coli)

value: csf no growth


title: Con081

description: Platform Test Set


title: Con200

description: Platform Test Set


title: Con086

description: Platform Test Set


title: Inf164

description: set:Training Set

value: Yes

value: positive(kelbsiella oxytoca)

value: not stated


title: Con065

description: Platform Test Set

value: No


title: Con071

description: Platform Test Set

value: Male


title: Inf145

description: set:Training Set

value: Enterococcus faecalis


title: Con069

description: Platform Test Set

value: peripheral blood


title: Inf047

description: Platform Test Set

value: candida

value: klebsiella in peritoneal fluid and ET secretions, NEC 1 week previously, candida in blood 4 days previously


title: Con067

description: Platform Test Set


title: Con181

description: Platform Test Set

value: Female


title: Inf138

description: set:Training Set

value: infected

value: Positive (coag neg staph)


title: Inf203

description: set:Training Set

value: Coagulase negative staphylococcus


title: Inf149

description: set:Training Set

value: negative

value: 1cfu Klebsiells in CSF


title: Inf152

description: set:Training Set

value: positive(coag neg staph)

value: blood culture 3 days previous 2 strains coag neg staph, line tip 2 days previous mixed coag neg staph


title: Inf157

description: set:Training Set


title: Inf133

description: set:Training Set

value: Yes


title: Con063

description: Platform Test Set


title: Inf125

description: set:Training Set

value: Postive (coag neg staph)

value: blood culture 5 days previous grew coag neg staph


title: Con051

description: Platform Test Set

value: No


title: Con058

description: Platform Test Set

value: Male


title: Con042

description: Platform Test Set

value: umbilical swab grew anaerobes, coliforms, Saureus and gp B strep


title: Inf114

description: set:Training Set

value: peripheral blood

value: Positive(coag neg staph)

value: long line tip coag neg staph, previous day ETT tip and ETS Ecoli/coliforms


title: Con062

description: Platform Test Set

value: Female

value: no. blood culture 3 days previously negative


title: Inf102

description: set:Training Set

value: infected

value: Positive (pseudomonas aeuruginosa and coag neg staph)

value: Blood culture positive for pseudomonas and coag neg staph, coag neg staph also present in blood cultures x 2 in previous week and also the next day


title: Inf111

description: set:Training Set

value: Coagulase negative staphylococcus

value: 2 blood cultures coag neg staph


title: Con001

description: Platform Test Set


title: Inf119

description: set:Training Set


title: Inf116

description: set:Training Set

value: negative

value: aspirate of abscess grew coag neg staph


title: Inf091

description: set:Training Set

value: Positive (Group B Strep)

value: CSF negative


title: Inf082

description: set:Training Set

value: Yes

value: positive (enterobacter cloacae)

value: enterobacter cloacae (also 1 week post sample)


title: Con017

description: Platform Test Set

value: peripheral blood

value: Male

value: No


title: Inf089

description: set:Training Set

value: positive (coag neg staph)

value: CSF and urine negative


title: Inf083

description: set:Training Set

value: infected

value: Female

value: Positive (E faecium)

value: Blood cultures 3 days before and 2 days after also E faecium


title: Vir228

description: Validation Test Set

hyb_protocol: Standard Affymetrix GeneTitan 3' IVT hybridisation and wash procedure.

scan_protocol: GeneChips were scanned using the Affymetrix GeneTitan Scanner using the GCOS software tool

data_processing: R/Bioconductor using RMA normalisation, non specific expression level filter of 50 applied and empirical Bayes statistical test with Benjamini-Hochberg FDR adjustment performed.

label_protocol: Biotinylated cRNA were prepared with the standard Affymetrix GeneChip GeneTitan 3' IVT labeling kit.

tag: corrected gestational age at sample (weeks+days)

value: Rhinovirus PCR +ve


title: Inf084

description: set:Training Set

value: Positive (coag neg staph)

value: CSF coag neg staph.  Also from day before long line tip and BC grew coag neg staph


title: Con049

description: Platform Test Set


title: Con028

description: Platform Test Set


title: Vir269

description: Validation Test Set

value: CMV


title: Inf112

description: set:Training Set

value: Positive(group B strep)

value: CSF coag neg staph


title: Inf083

description: Platform Test Set

value: Yes


title: Vir278

description: Validation Test Set


title: NEC283

description: Validation Test Set

value: Enterobacter cloacae, 6 days previously