title: H1N1 DEE3 Subject 23, Hour 5

description:
H1N1_DEE3_SAMPLE_440
Gene expression profile from peripheral blood of H1N1 DEE3 subject 23, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 23, Hour 101

status: Public on Jun 22 2016

type: RNA

city: Ann Arbor

first: Alfred

last: Hero

state: MI

address: 1301 Beal Avenue

country: USA

institute: University of Michigan

description:
H1N1_DEE3_SAMPLE_452
Gene expression profile from peripheral blood of H1N1 DEE3 subject 23, hour 101.

hyb_protocol: Following fragmentation, cRNA were hybridized on GeneChip Human Genome U133A 2.0 Array.

scan_protocol: GeneChips were scanned using the Affymetrix GeneArray Scanner.

data_processing:
The data were analyzed with robust multi-array average (RMA) normalization using default background adjustment and quantile normalization settings. Then possible batch effect was removed by the parametric and nonparametric empirical Bayes frameworks.
Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENTREZG].

label: biotin

molecule: total RNA

organism: Homo sapiens

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: RNA was extracted at Expression Analysis (Durham, NC) from whole blood using the PAXgene™ 96 Blood RNA Kit (PreAnalytiX, Valencia, CA) employing the manufacturer's recommended protocol. While whole blood RNA is initially extracted, a secondary procedure (B-globin reduction) was then employed to remove the contribution of red blood cell (RBC) RNA to the total RNA. A set of four peptide nucleic acid (PNA) oligomers whose sequences are complementary to the 3' portions of the alpha and beta hemoglobin RNA transcripts were added to reduce globin RNA transcription due to RBC. The inhibition of globin cDNA synthesis dramatically reduces the relative amount of anti-sense, biotin-labeled cRNA corresponding to the hemoglobin transcripts.

treatment_protocol: 148 human volunteer subjects under 4 different inoculation regimes (HRV, RSV, H1N1, H3N2). During each challenge study, subjects had peripheral blood taken prior to inoculation with virus (baseline), immediately prior to inoculation (pre-challenge) and at set intervals following challenge.

tag: tissue

value: peripheral blood

tag: virus

tag: time point

value: hour 101

tag: subject

value: H1N1 DEE3 subject 23


title: H1N1 DEE3 Subject 22, Hour 166

description:
H1N1_DEE3_SAMPLE_437
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 166.

value: hour 166

value: H1N1 DEE3 subject 22


title: H1N1 DEE3 Subject 23, Hour 77

description:
H1N1_DEE3_SAMPLE_449
Gene expression profile from peripheral blood of H1N1 DEE3 subject 23, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 22, Hour 118

description:
H1N1_DEE3_SAMPLE_434
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 118.

value: hour 118


title: 1 Mx+liver (non-cancerous)

city: Shanghai

first: Lijian

last: Hui

address: Yueyang Road 320

department: Institute of Biochemistry and Cell Biology

country: China

institute: Shanghai Institutes for Biological Sciences, Chinese Academy for Sciences

hyb_protocol: Each Slide was hybridized with 1.65 ug Cy3-labeled cRNA using Gene Expression Hybridization Kit(Cat#5188-5242, Agilent technologies, Santa Clara, CA, US) in Hybridization Oven (Cat#G2545A, Agilent technologies, Santa Clara, CA, US), according to the manufacturer's instructions. After 17 hours hybridization, slides were washed in staining dishes (Cat#121, Thermo Shandon, Waltham, MA, US) with Gene Expression Wash Buffer Kit (Cat#5188-5327, Agilent technologies, Santa Clara, CA, US), followed the manufacturer's instructions.

scan_protocol: Slides were scanned by Agilent Microarray Scanner (Cat#G2565CA, Agilent technologies, Santa Clara, CA, US) with default settings, Dye channel: Green, Scan resolution=5um, PMT 100%, 10%, 16 bit.

data_processing: The scanned images were analyzed with Feature Extraction Software 10.7 (Agilent) using default parameters (protocol GE1_105_Dec08 and Grid: 014868_D_F_20090416) to obtain background subtracted and spatially detrended Processed Signal intensities. Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded.

organism: Mus musculus

source_name: liver

label_protocol: Total RNA was amplified and labeled by Low Input Quick Amp Labelling Kit, One-Color (Cat#5190-2305, Agilent technologies, Santa Clara, CA, US), following the manufacturer's instructions. Labeled cRNA were purified by Rneasy mini Kit(Cat#74106, QIAGEN, GmBH, Germany).

extract_protocol: Total RNA was isolated from tissues by Trizol (Invitrogen) and further purified by RNeasy mini Kit and RNase-Free DNase Set following manufacturer's introductions,

treatment_protocol:
liver cancer induction: Male mice were injected by 50mg/Kg (body weight) N,Nitrosodiethylamine (DEN) at 2 weeks old
8 months after DEN treatent, mice were treated with poly(IC) and sacrificed for liver cancer analysis 1 week later

tag: genotype/variation

value: Mxcre+

tag: gender

value: male

tag: strain

tag: disease state

value: non-cancerous

tag: treatment

value: 1 week after poly(IC) treatment, 2 months after irradiation and bone marrow transplantation


title: H1N1 DEE3 Subject 22, Hour 125

description:
H1N1_DEE3_SAMPLE_435
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 125.

value: hour 125


title: H1N1 DEE3 Subject 22, Hour 108

description:
H1N1_DEE3_SAMPLE_433
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 22, Hour 142

description:
H1N1_DEE3_SAMPLE_436
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 22, Hour 45

description:
H1N1_DEE3_SAMPLE_425
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 22, Hour 77

description:
H1N1_DEE3_SAMPLE_429
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 77.


title: H1N1 DEE3 Subject 22, Hour 53

description:
H1N1_DEE3_SAMPLE_426
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 22, Hour 29

description:
H1N1_DEE3_SAMPLE_423
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 21, Hour 166

description:
H1N1_DEE3_SAMPLE_417
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 166.

value: peripheral blood

value: H1N1 DEE3 subject 21


title: H1N1 DEE3 Subject 22, Hour 84

description:
H1N1_DEE3_SAMPLE_430
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 22, Hour 93

description:
H1N1_DEE3_SAMPLE_431
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 21, Hour 118

description:
H1N1_DEE3_SAMPLE_414
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 118.


title: H1N1 DEE3 Subject 21, Hour 125

description:
H1N1_DEE3_SAMPLE_415
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 125.


title: H1N1 DEE3 Subject 22, Hour 36

description:
H1N1_DEE3_SAMPLE_424
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 36.

value: hour 36

value: H1N1 DEE3 subject 22


title: H1N1 DEE3 Subject 22, Hour 69

description:
H1N1_DEE3_SAMPLE_428
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 22, Hour 5

description:
H1N1_DEE3_SAMPLE_420
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 22, Hour 12

description:
H1N1_DEE3_SAMPLE_421
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 22, Hour 0

description:
H1N1_DEE3_SAMPLE_419
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 21, Hour 142

description:
H1N1_DEE3_SAMPLE_416
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 142.


title: H1N1 DEE3 Subject 22, Hour -21

description:
H1N1_DEE3_SAMPLE_418
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 22, Hour 101

description:
H1N1_DEE3_SAMPLE_432
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 21, Hour 101

description:
H1N1_DEE3_SAMPLE_412
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 101.


title: H1N1 DEE3 Subject 21, Hour 93

description:
H1N1_DEE3_SAMPLE_411
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 93.


title: H1N1 DEE3 Subject 22, Hour 60

description:
H1N1_DEE3_SAMPLE_427
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 21, Hour 77

description:
H1N1_DEE3_SAMPLE_409
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 21, Hour 108

description:
H1N1_DEE3_SAMPLE_413
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 21, Hour 84

description:
H1N1_DEE3_SAMPLE_410
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 84.


title: H1N1 DEE3 Subject 22, Hour 21

description:
H1N1_DEE3_SAMPLE_422
Gene expression profile from peripheral blood of H1N1 DEE3 subject 22, hour 21.

value: hour 21


title: H1N1 DEE3 Subject 21, Hour 53

description:
H1N1_DEE3_SAMPLE_407
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 21, Hour 45

description:
H1N1_DEE3_SAMPLE_406
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 45.

value: peripheral blood

value: hour 45


title: H1N1 DEE3 Subject 21, Hour 60

description:
H1N1_DEE3_SAMPLE_408
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 60.

value: H1N1 DEE3 subject 21


title: H1N1 DEE3 Subject 21, Hour 21

description:
H1N1_DEE3_SAMPLE_403
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 21.


title: H1N1 DEE3 Subject 21, Hour 29

description:
H1N1_DEE3_SAMPLE_404
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 20, Hour 60

description:
H1N1_DEE3_SAMPLE_388
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 60.

value: H1N1 DEE3 subject 20


title: H1N1 DEE3 Subject 20, Hour 118

description:
H1N1_DEE3_SAMPLE_395
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 20, Hour 142

description:
H1N1_DEE3_SAMPLE_397
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 20, Hour 166

description:
H1N1_DEE3_SAMPLE_398
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 166.

value: hour 166


title: H1N1 DEE3 Subject 21, Hour -21

description:
H1N1_DEE3_SAMPLE_399
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour -21.


title: H1N1 DEE3 Subject 20, Hour 84

description:
H1N1_DEE3_SAMPLE_391
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 20, Hour 101

description:
H1N1_DEE3_SAMPLE_393
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 101.


title: H1N1 DEE3 Subject 20, Hour 108

description:
H1N1_DEE3_SAMPLE_394
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 108.


title: H1N1 DEE3 Subject 21, Hour 0

description:
H1N1_DEE3_SAMPLE_400
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 21, Hour 36

description:
H1N1_DEE3_SAMPLE_405
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 20, Hour 36

description:
H1N1_DEE3_SAMPLE_385
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 36.


title: H1N1 DEE3 Subject 20, Hour 93

description:
H1N1_DEE3_SAMPLE_392
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 21, Hour 12

description:
H1N1_DEE3_SAMPLE_402
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 20, Hour 45

description:
H1N1_DEE3_SAMPLE_386
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 45.


title: H1N1 DEE3 Subject 20, Hour 53

description:
H1N1_DEE3_SAMPLE_387
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 53.


title: H1N1 DEE3 Subject 20, Hour 21

description:
H1N1_DEE3_SAMPLE_383
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 21.


title: H1N1 DEE3 Subject 20, Hour 12

description:
H1N1_DEE3_SAMPLE_382
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 12.


title: H1N1 DEE3 Subject 20, Hour 5

description:
H1N1_DEE3_SAMPLE_381
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 21, Hour 5

description:
H1N1_DEE3_SAMPLE_401
Gene expression profile from peripheral blood of H1N1 DEE3 subject 21, hour 5.


title: H1N1 DEE3 Subject 20, Hour -21

description:
H1N1_DEE3_SAMPLE_379
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 20, Hour 0

description:
H1N1_DEE3_SAMPLE_380
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 0.


title: H1N1 DEE3 Subject 19, Hour 125

description:
H1N1_DEE3_SAMPLE_376
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 125.

value: hour 125

value: H1N1 DEE3 subject 19


title: H1N1 DEE3 Subject 19, Hour 166

description:
H1N1_DEE3_SAMPLE_378
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 166.

value: peripheral blood


title: H1N1 DEE3 Subject 20, Hour 77

description:
H1N1_DEE3_SAMPLE_390
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 20, Hour 69

description:
H1N1_DEE3_SAMPLE_389
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 20, Hour 125

description:
H1N1_DEE3_SAMPLE_396
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 125.


title: H1N1 DEE3 Subject 19, Hour 142

description:
H1N1_DEE3_SAMPLE_377
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 142.


title: H1N1 DEE3 Subject 19, Hour 108

description:
H1N1_DEE3_SAMPLE_374
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 20, Hour 29

description:
H1N1_DEE3_SAMPLE_384
Gene expression profile from peripheral blood of H1N1 DEE3 subject 20, hour 29.

value: hour 29

value: H1N1 DEE3 subject 20


title: H1N1 DEE3 Subject 19, Hour 118

description:
H1N1_DEE3_SAMPLE_375
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 19, Hour 93

description:
H1N1_DEE3_SAMPLE_372
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 93.


title: H1N1 DEE3 Subject 19, Hour 101

description:
H1N1_DEE3_SAMPLE_373
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 19, Hour 69

description:
H1N1_DEE3_SAMPLE_369
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 69.


title: H1N1 DEE3 Subject 19, Hour 77

description:
H1N1_DEE3_SAMPLE_370
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 77.


title: H1N1 DEE3 Subject 19, Hour 60

description:
H1N1_DEE3_SAMPLE_368
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 19, Hour 29

description:
H1N1_DEE3_SAMPLE_364
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 29.


title: H1N1 DEE3 Subject 19, Hour -21

description:
H1N1_DEE3_SAMPLE_359
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour -21.


title: H1N1 DEE3 Subject 19, Hour 45

description:
H1N1_DEE3_SAMPLE_366
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 19, Hour 84

description:
H1N1_DEE3_SAMPLE_371
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 19, Hour 53

description:
H1N1_DEE3_SAMPLE_367
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 19, Hour 5

description:
H1N1_DEE3_SAMPLE_361
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 5.


title: H1N1 DEE3 Subject 19, Hour 36

description:
H1N1_DEE3_SAMPLE_365
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 18, Hour 166

description:
H1N1_DEE3_SAMPLE_358
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 166.

value: hour 166

value: H1N1 DEE3 subject 18


title: H1N1 DEE3 Subject 19, Hour 0

description:
H1N1_DEE3_SAMPLE_360
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 18, Hour 108

description:
H1N1_DEE3_SAMPLE_354
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 108.


title: H1N1 DEE3 Subject 18, Hour 142

description:
H1N1_DEE3_SAMPLE_357
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 18, Hour 101

description:
H1N1_DEE3_SAMPLE_353
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 101.

value: peripheral blood


title: H1N1 DEE3 Subject 18, Hour 118

description:
H1N1_DEE3_SAMPLE_355
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 118.


title: H1N1 DEE3 Subject 18, Hour 77

description:
H1N1_DEE3_SAMPLE_350
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 18, Hour 53

description:
H1N1_DEE3_SAMPLE_347
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 53.


title: H1N1 DEE3 Subject 18, Hour 69

description:
H1N1_DEE3_SAMPLE_349
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 18, Hour 125

description:
H1N1_DEE3_SAMPLE_356
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 125.

value: hour 125


title: H1N1 DEE3 Subject 19, Hour 21

description:
H1N1_DEE3_SAMPLE_363
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 21.

value: hour 21

value: H1N1 DEE3 subject 19


title: H1N1 DEE3 Subject 18, Hour 60

description:
H1N1_DEE3_SAMPLE_348
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 60.


title: H1N1 DEE3 Subject 19, Hour 12

description:
H1N1_DEE3_SAMPLE_362
Gene expression profile from peripheral blood of H1N1 DEE3 subject 19, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 18, Hour 93

description:
H1N1_DEE3_SAMPLE_352
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 18, Hour 45

description:
H1N1_DEE3_SAMPLE_346
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 45.


title: H1N1 DEE3 Subject 18, Hour 36

description:
H1N1_DEE3_SAMPLE_345
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 36.


title: H1N1 DEE3 Subject 18, Hour 29

description:
H1N1_DEE3_SAMPLE_344
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 18, Hour 84

description:
H1N1_DEE3_SAMPLE_351
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 84.


title: H1N1 DEE3 Subject 18, Hour 12

description:
H1N1_DEE3_SAMPLE_342
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 12.


title: H1N1 DEE3 Subject 18, Hour 5

description:
H1N1_DEE3_SAMPLE_341
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 17, Hour 142

description:
H1N1_DEE3_SAMPLE_337
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 142.

value: H1N1 DEE3 subject 17


title: H1N1 DEE3 Subject 18, Hour 21

description:
H1N1_DEE3_SAMPLE_343
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 21.


title: H1N1 DEE3 Subject 18, Hour -21

description:
H1N1_DEE3_SAMPLE_339
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 17, Hour 166

description:
H1N1_DEE3_SAMPLE_338
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 166.


title: H1N1 DEE3 Subject 17, Hour 93

description:
H1N1_DEE3_SAMPLE_332
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 93.


title: H1N1 DEE3 Subject 17, Hour 108

description:
H1N1_DEE3_SAMPLE_334
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 17, Hour 118

description:
H1N1_DEE3_SAMPLE_335
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 17, Hour 101

description:
H1N1_DEE3_SAMPLE_333
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 17, Hour 125

description:
H1N1_DEE3_SAMPLE_336
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 125.


title: H1N1 DEE3 Subject 17, Hour 84

description:
H1N1_DEE3_SAMPLE_331
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 17, Hour 77

description:
H1N1_DEE3_SAMPLE_330
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 77.


title: H1N1 DEE3 Subject 17, Hour 69

description:
H1N1_DEE3_SAMPLE_329
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 69.


title: H1N1 DEE3 Subject 17, Hour 60

description:
H1N1_DEE3_SAMPLE_328
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 17, Hour 45

description:
H1N1_DEE3_SAMPLE_326
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 45.

value: peripheral blood

value: hour 45


title: H1N1 DEE3 Subject 17, Hour 36

description:
H1N1_DEE3_SAMPLE_325
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 17, Hour 53

description:
H1N1_DEE3_SAMPLE_327
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 17, Hour -21

description:
H1N1_DEE3_SAMPLE_319
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour -21.


title: H1N1 DEE3 Subject 17, Hour 0

description:
H1N1_DEE3_SAMPLE_320
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 16, Hour 125

description:
H1N1_DEE3_SAMPLE_316
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 125.

value: hour 125

value: H1N1 DEE3 subject 16


title: H1N1 DEE3 Subject 16, Hour 118

description:
H1N1_DEE3_SAMPLE_315
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 118.


title: H1N1 DEE3 Subject 16, Hour 142

description:
H1N1_DEE3_SAMPLE_317
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 17, Hour 29

description:
H1N1_DEE3_SAMPLE_324
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 16, Hour 166

description:
H1N1_DEE3_SAMPLE_318
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 166.

value: hour 166


title: H1N1 DEE3 Subject 17, Hour 5

description:
H1N1_DEE3_SAMPLE_321
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 5.

value: hour 5

value: H1N1 DEE3 subject 17


title: H1N1 DEE3 Subject 17, Hour 12

description:
H1N1_DEE3_SAMPLE_322
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 17, Hour 21

description:
H1N1_DEE3_SAMPLE_323
Gene expression profile from peripheral blood of H1N1 DEE3 subject 17, hour 21.

value: hour 21


title: H1N1 DEE3 Subject 16, Hour 108

description:
H1N1_DEE3_SAMPLE_314
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 16, Hour 101

description:
H1N1_DEE3_SAMPLE_313
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 16, Hour 21

description:
H1N1_DEE3_SAMPLE_303
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 21.


title: H1N1 DEE3 Subject 16, Hour 93

description:
H1N1_DEE3_SAMPLE_312
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 16, Hour 36

description:
H1N1_DEE3_SAMPLE_305
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 36.

value: peripheral blood


title: H1N1 DEE3 Subject 16, Hour 12

description:
H1N1_DEE3_SAMPLE_302
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 12.


title: H1N1 DEE3 Subject 16, Hour 69

description:
H1N1_DEE3_SAMPLE_309
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 16, Hour 53

description:
H1N1_DEE3_SAMPLE_307
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 53.


title: H1N1 DEE3 Subject 16, Hour 0

description:
H1N1_DEE3_SAMPLE_300
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 0.


title: H1N1 DEE3 Subject 16, Hour 5

description:
H1N1_DEE3_SAMPLE_301
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 5.


title: H1N1 DEE3 Subject 16, Hour 29

description:
H1N1_DEE3_SAMPLE_304
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 29.


title: H1N1 DEE3 Subject 15, Hour 142

description:
H1N1_DEE3_SAMPLE_297
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 142.

value: H1N1 DEE3 subject 15


title: H1N1 DEE3 Subject 15, Hour 166

description:
H1N1_DEE3_SAMPLE_298
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 166.


title: H1N1 DEE3 Subject 16, Hour 84

description:
H1N1_DEE3_SAMPLE_311
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 15, Hour 118

description:
H1N1_DEE3_SAMPLE_295
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 16, Hour 60

description:
H1N1_DEE3_SAMPLE_308
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 15, Hour 125

description:
H1N1_DEE3_SAMPLE_296
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 125.

value: hour 125


title: H1N1 DEE3 Subject 15, Hour 108

description:
H1N1_DEE3_SAMPLE_294
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 108.


title: H1N1 DEE3 Subject 16, Hour 77

description:
H1N1_DEE3_SAMPLE_310
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 77.

value: hour 77

value: H1N1 DEE3 subject 16


title: H1N1 DEE3 Subject 15, Hour 69

description:
H1N1_DEE3_SAMPLE_289
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 69.


title: H1N1 DEE3 Subject 15, Hour 101

description:
H1N1_DEE3_SAMPLE_293
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 101.


title: H1N1 DEE3 Subject 16, Hour 45

description:
H1N1_DEE3_SAMPLE_306
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 15, Hour 36

description:
H1N1_DEE3_SAMPLE_285
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 15, Hour 77

description:
H1N1_DEE3_SAMPLE_290
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 77.


title: H1N1 DEE3 Subject 15, Hour 45

description:
H1N1_DEE3_SAMPLE_286
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 45.


title: H1N1 DEE3 Subject 15, Hour 84

description:
H1N1_DEE3_SAMPLE_291
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 84.


title: H1N1 DEE3 Subject 15, Hour 60

description:
H1N1_DEE3_SAMPLE_288
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 60.


title: H1N1 DEE3 Subject 15, Hour 53

description:
H1N1_DEE3_SAMPLE_287
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 16, Hour -21

description:
H1N1_DEE3_SAMPLE_299
Gene expression profile from peripheral blood of H1N1 DEE3 subject 16, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 14, Hour 142

description:
H1N1_DEE3_SAMPLE_278
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 142.

value: hour 142

value: H1N1 DEE3 subject 14


title: H1N1 DEE3 Subject 15, Hour 5

description:
H1N1_DEE3_SAMPLE_281
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 15, Hour 29

description:
H1N1_DEE3_SAMPLE_284
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 15, Hour 12

description:
H1N1_DEE3_SAMPLE_282
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 12.

value: peripheral blood

value: hour 12


title: H1N1 DEE3 Subject 15, Hour 21

description:
H1N1_DEE3_SAMPLE_283
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 21.

value: hour 21

value: H1N1 DEE3 subject 15


title: H1N1 DEE3 Subject 14, Hour 125

description:
H1N1_DEE3_SAMPLE_277
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 125.


title: H1N1 DEE3 Subject 14, Hour 166

description:
H1N1_DEE3_SAMPLE_279
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 166.

value: hour 166


title: H1N1 DEE3 Subject 14, Hour 118

description:
H1N1_DEE3_SAMPLE_276
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 15, Hour 0

description:
H1N1_DEE3_SAMPLE_280
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 15, Hour 93

description:
H1N1_DEE3_SAMPLE_292
Gene expression profile from peripheral blood of H1N1 DEE3 subject 15, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 14, Hour 108

description:
H1N1_DEE3_SAMPLE_275
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 14, Hour 101

description:
H1N1_DEE3_SAMPLE_274
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 14, Hour 93

description:
H1N1_DEE3_SAMPLE_273
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 93.


title: H1N1 DEE3 Subject 14, Hour 84

description:
H1N1_DEE3_SAMPLE_272
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 14, Hour 29

description:
H1N1_DEE3_SAMPLE_265
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 29.


title: H1N1 DEE3 Subject 13, Hour 142

description:
H1N1_DEE3_SAMPLE_258
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 142.

value: H1N1 DEE3 subject 13


title: H1N1 DEE3 Subject 14, Hour 60

description:
H1N1_DEE3_SAMPLE_269
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 14, Hour 5

description:
H1N1_DEE3_SAMPLE_262
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 5.


title: H1N1 DEE3 Subject 14, Hour 53

description:
H1N1_DEE3_SAMPLE_268
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 14, Hour 12

description:
H1N1_DEE3_SAMPLE_263
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 12.

value: H1N1 DEE3 subject 14


title: H1N1 DEE3 Subject 14, Hour 45

description:
H1N1_DEE3_SAMPLE_267
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 14, Hour 21

description:
H1N1_DEE3_SAMPLE_264
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 21.


title: H1N1 DEE3 Subject 13, Hour 166

description:
H1N1_DEE3_SAMPLE_259
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 166.


title: H1N1 DEE3 Subject 14, Hour 0

description:
H1N1_DEE3_SAMPLE_261
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 0.


title: H1N1 DEE3 Subject 14, Hour 69

description:
H1N1_DEE3_SAMPLE_270
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 14, Hour 77

description:
H1N1_DEE3_SAMPLE_271
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 77.

value: peripheral blood

value: hour 77


title: H1N1 DEE3 Subject 14, Hour -21

description:
H1N1_DEE3_SAMPLE_260
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 13, Hour 118

description:
H1N1_DEE3_SAMPLE_256
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 118.


title: H1N1 DEE3 Subject 13, Hour 125

description:
H1N1_DEE3_SAMPLE_257
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 125.

value: hour 125


title: H1N1 DEE3 Subject 13, Hour 108

description:
H1N1_DEE3_SAMPLE_255
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 108.


title: H1N1 DEE3 Subject 13, Hour 93

description:
H1N1_DEE3_SAMPLE_253
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 93.


title: H1N1 DEE3 Subject 14, Hour 36

description:
H1N1_DEE3_SAMPLE_266
Gene expression profile from peripheral blood of H1N1 DEE3 subject 14, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 13, Hour 29

description:
H1N1_DEE3_SAMPLE_245
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 13, Hour 45

description:
H1N1_DEE3_SAMPLE_247
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 45.


title: H1N1 DEE3 Subject 13, Hour 60

description:
H1N1_DEE3_SAMPLE_249
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 60.


title: H1N1 DEE3 Subject 13, Hour 53

description:
H1N1_DEE3_SAMPLE_248
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 53.


title: H1N1 DEE3 Subject 13, Hour 77

description:
H1N1_DEE3_SAMPLE_251
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 77.


title: H1N1 DEE3 Subject 13, Hour 21

description:
H1N1_DEE3_SAMPLE_244
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 21.

value: hour 21


title: H1N1 DEE3 Subject 13, Hour 69

description:
H1N1_DEE3_SAMPLE_250
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 69.


title: H1N1 DEE3 Subject 13, Hour 84

description:
H1N1_DEE3_SAMPLE_252
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 84.


title: H1N1 DEE3 Subject 13, Hour 101

description:
H1N1_DEE3_SAMPLE_254
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 101.


title: H1N1 DEE3 Subject 13, Hour 5

description:
H1N1_DEE3_SAMPLE_242
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 12, Hour 125

description:
H1N1_DEE3_SAMPLE_238
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 125.

value: H1N1 DEE3 subject 12


title: H1N1 DEE3 Subject 12, Hour 142

description:
H1N1_DEE3_SAMPLE_239
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 12, Hour 166

description:
H1N1_DEE3_SAMPLE_240
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 166.

value: hour 166


title: H1N1 DEE3 Subject 13, Hour 36

description:
H1N1_DEE3_SAMPLE_246
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 36.

value: H1N1 DEE3 subject 13


title: H1N1 DEE3 Subject 12, Hour 118

description:
H1N1_DEE3_SAMPLE_237
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 12, Hour 84

description:
H1N1_DEE3_SAMPLE_233
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 12, Hour 77

description:
H1N1_DEE3_SAMPLE_232
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 77.


title: H1N1 DEE3 Subject 12, Hour 101

description:
H1N1_DEE3_SAMPLE_235
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 12, Hour 93

description:
H1N1_DEE3_SAMPLE_234
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 12, Hour 108

description:
H1N1_DEE3_SAMPLE_236
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 12, Hour 21

description:
H1N1_DEE3_SAMPLE_225
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 21.

value: peripheral blood


title: H1N1 DEE3 Subject 12, Hour 60

description:
H1N1_DEE3_SAMPLE_230
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 12, Hour 69

description:
H1N1_DEE3_SAMPLE_231
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 12, Hour 53

description:
H1N1_DEE3_SAMPLE_229
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 13, Hour 0

description:
H1N1_DEE3_SAMPLE_241
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 12, Hour 45

description:
H1N1_DEE3_SAMPLE_228
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 12, Hour 12

description:
H1N1_DEE3_SAMPLE_224
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 12, Hour -21

description:
H1N1_DEE3_SAMPLE_221
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 11, Hour 166

description:
H1N1_DEE3_SAMPLE_220
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 166.

value: H1N1 DEE3 subject 11


title: H1N1 DEE3 Subject 12, Hour 0

description:
H1N1_DEE3_SAMPLE_222
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 0.

value: H1N1 DEE3 subject 12


title: H1N1 DEE3 Subject 12, Hour 5

description:
H1N1_DEE3_SAMPLE_223
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 11, Hour 125

description:
H1N1_DEE3_SAMPLE_218
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 125.

value: hour 125


title: H1N1 DEE3 Subject 11, Hour 142

description:
H1N1_DEE3_SAMPLE_219
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 11, Hour 108

description:
H1N1_DEE3_SAMPLE_216
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 108.


title: H1N1 DEE3 Subject 11, Hour 118

description:
H1N1_DEE3_SAMPLE_217
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 11, Hour 101

description:
H1N1_DEE3_SAMPLE_215
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 12, Hour 29

description:
H1N1_DEE3_SAMPLE_226
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 11, Hour 77

description:
H1N1_DEE3_SAMPLE_212
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 11, Hour 84

description:
H1N1_DEE3_SAMPLE_213
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 84.

value: peripheral blood

value: hour 84


title: H1N1 DEE3 Subject 12, Hour 36

description:
H1N1_DEE3_SAMPLE_227
Gene expression profile from peripheral blood of H1N1 DEE3 subject 12, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 11, Hour 69

description:
H1N1_DEE3_SAMPLE_211
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 11, Hour 93

description:
H1N1_DEE3_SAMPLE_214
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 11, Hour 45

description:
H1N1_DEE3_SAMPLE_208
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 11, Hour 60

description:
H1N1_DEE3_SAMPLE_210
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 11, Hour 53

description:
H1N1_DEE3_SAMPLE_209
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 11, Hour 0

description:
H1N1_DEE3_SAMPLE_202
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 0.

value: hour 0

value: H1N1 DEE3 subject 11


title: H1N1 DEE3 Subject 11, Hour 29

description:
H1N1_DEE3_SAMPLE_206
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 29.


title: H1N1 DEE3 Subject 11, Hour 36

description:
H1N1_DEE3_SAMPLE_207
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 36.


title: H1N1 DEE3 Subject 11, Hour 21

description:
H1N1_DEE3_SAMPLE_205
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 21.

value: hour 21


title: H1N1 DEE3 Subject 10, Hour 166

description:
H1N1_DEE3_SAMPLE_200
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 166.

value: hour 166

value: H1N1 DEE3 subject 10


title: H1N1 DEE3 Subject 11, Hour 12

description:
H1N1_DEE3_SAMPLE_204
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 11, Hour 5

description:
H1N1_DEE3_SAMPLE_203
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 10, Hour 118

description:
H1N1_DEE3_SAMPLE_197
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 10, Hour 101

description:
H1N1_DEE3_SAMPLE_195
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 10, Hour 93

description:
H1N1_DEE3_SAMPLE_194
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 93.

value: peripheral blood


title: H1N1 DEE3 Subject 10, Hour 142

description:
H1N1_DEE3_SAMPLE_199
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 10, Hour 125

description:
H1N1_DEE3_SAMPLE_198
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 125.

value: hour 125


title: H1N1 DEE3 Subject 10, Hour 108

description:
H1N1_DEE3_SAMPLE_196
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 10, Hour 77

description:
H1N1_DEE3_SAMPLE_192
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 11, Hour -21

description:
H1N1_DEE3_SAMPLE_201
Gene expression profile from peripheral blood of H1N1 DEE3 subject 11, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 10, Hour 60

description:
H1N1_DEE3_SAMPLE_190
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 10, Hour 69

description:
H1N1_DEE3_SAMPLE_191
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 10, Hour 53

description:
H1N1_DEE3_SAMPLE_189
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 10, Hour 45

description:
H1N1_DEE3_SAMPLE_188
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 10, Hour 36

description:
H1N1_DEE3_SAMPLE_187
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 10, Hour 29

description:
H1N1_DEE3_SAMPLE_186
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 9, Hour 118

description:
H1N1_DEE3_SAMPLE_177
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 118.

value: H1N1 DEE3 subject 9


title: H1N1 DEE3 Subject 10, Hour 5

description:
H1N1_DEE3_SAMPLE_183
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 5.

value: H1N1 DEE3 subject 10


title: H1N1 DEE3 Subject 10, Hour 84

description:
H1N1_DEE3_SAMPLE_193
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 9, Hour 125

description:
H1N1_DEE3_SAMPLE_178
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 125.


title: H1N1 DEE3 Subject 10, Hour 12

description:
H1N1_DEE3_SAMPLE_184
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 10, Hour 0

description:
H1N1_DEE3_SAMPLE_182
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 9, Hour 142

description:
H1N1_DEE3_SAMPLE_179
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 142.

value: peripheral blood


title: H1N1 DEE3 Subject 10, Hour -21

description:
H1N1_DEE3_SAMPLE_181
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour -21.


title: H1N1 DEE3 Subject 10, Hour 21

description:
H1N1_DEE3_SAMPLE_185
Gene expression profile from peripheral blood of H1N1 DEE3 subject 10, hour 21.

value: hour 21


title: H1N1 DEE3 Subject 9, Hour 166

description:
H1N1_DEE3_SAMPLE_180
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 166.

value: hour 166


title: H1N1 DEE3 Subject 9, Hour 93

description:
H1N1_DEE3_SAMPLE_174
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 9, Hour 101

description:
H1N1_DEE3_SAMPLE_175
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 9, Hour 108

description:
H1N1_DEE3_SAMPLE_176
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 9, Hour 60

description:
H1N1_DEE3_SAMPLE_170
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 9, Hour 69

description:
H1N1_DEE3_SAMPLE_171
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 9, Hour 53

description:
H1N1_DEE3_SAMPLE_169
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 9, Hour 45

description:
H1N1_DEE3_SAMPLE_168
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 9, Hour 77

description:
H1N1_DEE3_SAMPLE_172
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 9, Hour 36

description:
H1N1_DEE3_SAMPLE_167
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 9, Hour 29

description:
H1N1_DEE3_SAMPLE_166
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 29.

value: hour 29

value: H1N1 DEE3 subject 9


title: H1N1 DEE3 Subject 9, Hour 21

description:
H1N1_DEE3_SAMPLE_165
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 21.


title: H1N1 DEE3 Subject 9, Hour 84

description:
H1N1_DEE3_SAMPLE_173
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 9, Hour -21

description:
H1N1_DEE3_SAMPLE_161
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 9, Hour 12

description:
H1N1_DEE3_SAMPLE_164
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 9, Hour 0

description:
H1N1_DEE3_SAMPLE_162
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 0.

value: peripheral blood

value: hour 0


title: H1N1 DEE3 Subject 9, Hour 5

description:
H1N1_DEE3_SAMPLE_163
Gene expression profile from peripheral blood of H1N1 DEE3 subject 9, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 18, Hour 0

description:
H1N1_DEE3_SAMPLE_340
Gene expression profile from peripheral blood of H1N1 DEE3 subject 18, hour 0.

value: H1N1 DEE3 subject 18


title: H1N1 DEE3 Subject 8, Hour 166

description:
H1N1_DEE3_SAMPLE_160
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 166.

value: hour 166

value: H1N1 DEE3 subject 8


title: H1N1 DEE3 Subject 8, Hour 84

description:
H1N1_DEE3_SAMPLE_153
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 84.


title: H1N1 DEE3 Subject 8, Hour 142

description:
H1N1_DEE3_SAMPLE_159
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 8, Hour 93

description:
H1N1_DEE3_SAMPLE_154
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 8, Hour 101

description:
H1N1_DEE3_SAMPLE_155
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 8, Hour 77

description:
H1N1_DEE3_SAMPLE_152
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 77.


title: H1N1 DEE3 Subject 8, Hour 53

description:
H1N1_DEE3_SAMPLE_149
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 8, Hour 60

description:
H1N1_DEE3_SAMPLE_150
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 8, Hour 125

description:
H1N1_DEE3_SAMPLE_158
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 125.

value: hour 125


title: H1N1 DEE3 Subject 8, Hour 69

description:
H1N1_DEE3_SAMPLE_151
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 8, Hour 118

description:
H1N1_DEE3_SAMPLE_157
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 8, Hour 108

description:
H1N1_DEE3_SAMPLE_156
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 8, Hour 45

description:
H1N1_DEE3_SAMPLE_148
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 8, Hour 12

description:
H1N1_DEE3_SAMPLE_144
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 8, Hour 36

description:
H1N1_DEE3_SAMPLE_147
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 36.

value: peripheral blood

value: hour 36


title: H1N1 DEE3 Subject 8, Hour 29

description:
H1N1_DEE3_SAMPLE_146
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 8, Hour 0

description:
H1N1_DEE3_SAMPLE_142
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 8, Hour -21

description:
H1N1_DEE3_SAMPLE_141
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 8, Hour 5

description:
H1N1_DEE3_SAMPLE_143
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 5.

value: hour 5

value: H1N1 DEE3 subject 8


title: H1N1 DEE3 Subject 7, Hour 166

description:
H1N1_DEE3_SAMPLE_140
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 166.

value: hour 166

value: H1N1 DEE3 subject 7


title: H1N1 DEE3 Subject 7, Hour 118

description:
H1N1_DEE3_SAMPLE_137
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 118.


title: H1N1 DEE3 Subject 7, Hour 125

description:
H1N1_DEE3_SAMPLE_138
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 125.


title: H1N1 DEE3 Subject 7, Hour 108

description:
H1N1_DEE3_SAMPLE_136
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 108.


title: H1N1 DEE3 Subject 7, Hour 93

description:
H1N1_DEE3_SAMPLE_134
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 7, Hour 84

description:
H1N1_DEE3_SAMPLE_133
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 7, Hour 101

description:
H1N1_DEE3_SAMPLE_135
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 7, Hour 77

description:
H1N1_DEE3_SAMPLE_132
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 7, Hour 60

description:
H1N1_DEE3_SAMPLE_130
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 13, Hour 12

description:
H1N1_DEE3_SAMPLE_243
Gene expression profile from peripheral blood of H1N1 DEE3 subject 13, hour 12.

value: H1N1 DEE3 subject 13


title: H1N1 DEE3 Subject 7, Hour 21

description:
H1N1_DEE3_SAMPLE_125
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 21.

value: hour 21


title: H1N1 DEE3 Subject 7, Hour 45

description:
H1N1_DEE3_SAMPLE_128
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 7, Hour 36

description:
H1N1_DEE3_SAMPLE_127
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 36.

value: peripheral blood


title: H1N1 DEE3 Subject 7, Hour 29

description:
H1N1_DEE3_SAMPLE_126
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 29.


title: H1N1 DEE3 Subject 7, Hour 5

description:
H1N1_DEE3_SAMPLE_123
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 5.


title: H1N1 DEE3 Subject 7, Hour 12

description:
H1N1_DEE3_SAMPLE_124
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 7, Hour 0

description:
H1N1_DEE3_SAMPLE_122
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 0.


title: H1N1 DEE3 Subject 7, Hour -21

description:
H1N1_DEE3_SAMPLE_121
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour -21.


title: H1N1 DEE3 Subject 6, Hour 166

description:
H1N1_DEE3_SAMPLE_120
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 166.

value: H1N1 DEE3 subject 6


title: H1N1 DEE3 Subject 7, Hour 69

description:
H1N1_DEE3_SAMPLE_131
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 6, Hour 108

description:
H1N1_DEE3_SAMPLE_116
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 6, Hour 118

description:
H1N1_DEE3_SAMPLE_117
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 6, Hour 84

description:
H1N1_DEE3_SAMPLE_113
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 84.


title: H1N1 DEE3 Subject 7, Hour 53

description:
H1N1_DEE3_SAMPLE_129
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 6, Hour 69

description:
H1N1_DEE3_SAMPLE_111
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 69.


title: H1N1 DEE3 Subject 8, Hour 21

description:
H1N1_DEE3_SAMPLE_145
Gene expression profile from peripheral blood of H1N1 DEE3 subject 8, hour 21.

value: H1N1 DEE3 subject 8


title: H1N1 DEE3 Subject 6, Hour 60

description:
H1N1_DEE3_SAMPLE_110
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 60.


title: H1N1 DEE3 Subject 6, Hour 101

description:
H1N1_DEE3_SAMPLE_115
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 101.


title: H1N1 DEE3 Subject 6, Hour 53

description:
H1N1_DEE3_SAMPLE_109
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 53.


title: H1N1 DEE3 Subject 6, Hour 125

description:
H1N1_DEE3_SAMPLE_118
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 125.

value: hour 125


title: H1N1 DEE3 Subject 6, Hour 93

description:
H1N1_DEE3_SAMPLE_114
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 6, Hour 29

description:
H1N1_DEE3_SAMPLE_106
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 6, Hour 142

description:
H1N1_DEE3_SAMPLE_119
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 6, Hour 77

description:
H1N1_DEE3_SAMPLE_112
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 6, Hour 36

description:
H1N1_DEE3_SAMPLE_107
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 6, Hour 45

description:
H1N1_DEE3_SAMPLE_108
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 45.


title: H1N1 DEE3 Subject 6, Hour 5

description:
H1N1_DEE3_SAMPLE_103
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 5.

value: hour 5


title: H1N1 DEE3 Subject 6, Hour 12

description:
H1N1_DEE3_SAMPLE_104
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 12.


title: H1N1 DEE3 Subject 6, Hour -21

description:
H1N1_DEE3_SAMPLE_101
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 5, Hour 118

description:
H1N1_DEE3_SAMPLE_97
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 118.

value: H1N1 DEE3 subject 5


title: H1N1 DEE3 Subject 6, Hour 21

description:
H1N1_DEE3_SAMPLE_105
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 21.

value: peripheral blood

value: hour 21


title: H1N1 DEE3 Subject 6, Hour 0

description:
H1N1_DEE3_SAMPLE_102
Gene expression profile from peripheral blood of H1N1 DEE3 subject 6, hour 0.

value: hour 0

value: H1N1 DEE3 subject 6


title: H1N1 DEE3 Subject 5, Hour 166

description:
H1N1_DEE3_SAMPLE_100
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 166.

value: hour 166


title: H1N1 DEE3 Subject 5, Hour 108

description:
H1N1_DEE3_SAMPLE_96
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 5, Hour 125

description:
H1N1_DEE3_SAMPLE_98
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 125.


title: H1N1 DEE3 Subject 5, Hour 69

description:
H1N1_DEE3_SAMPLE_91
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 5, Hour 142

description:
H1N1_DEE3_SAMPLE_99
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 142.


title: H1N1 DEE3 Subject 5, Hour 84

description:
H1N1_DEE3_SAMPLE_93
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 5, Hour 93

description:
H1N1_DEE3_SAMPLE_94
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 93.


title: H1N1 DEE3 Subject 7, Hour 142

description:
H1N1_DEE3_SAMPLE_139
Gene expression profile from peripheral blood of H1N1 DEE3 subject 7, hour 142.

value: H1N1 DEE3 subject 7


title: H1N1 DEE3 Subject 5, Hour 101

description:
H1N1_DEE3_SAMPLE_95
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 5, Hour 60

description:
H1N1_DEE3_SAMPLE_90
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 5, Hour 77

description:
H1N1_DEE3_SAMPLE_92
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 77.


title: H1N1 DEE3 Subject 5, Hour 53

description:
H1N1_DEE3_SAMPLE_89
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 53.

value: hour 53


title: wild-type strain, time point 4, replicate 1

city: Ljubljana

first: Spela

last: Baebler

address: Vecna pot 111

department: Department of Biotechnology and Systems Biology

country: Slovenia

institute: National Institute of Biology

hyb_protocol: cRNA was cleaned and hybridized to microarrays using Gene Expression Hybridization Kit (Agilent Technologies) following manufacturers protocols. Hybridized microarrays were washed sing Gene Expression Wash Buffers (Agilent Technologies) followed by drying with acetonitrile (SIGMA).

scan_protocol: Fluorescent signal intensities were detected with Scan Control A.8.4.1 software (Agilent Technologies) on the Agilent DNA Microarray Scanner.

data_processing: Feature Extraction 10.7.1.1 software (Agilent Technologies) was used for feature extraction and quality control.Preprocessing was performed in R (packages Agi4x44PreProcess and limma).

organism: Saccharopolyspora erythraea

source_name: wild-type strain_time point 4

label_protocol: 300 ng of total RNA was spiked using (One-Color RNA Spike-In Mix, Agilent Technologies) and introduced to reverse transcription and subsequent in vitro transcription and Cy3 labelling using Full Spectrum™ MultiStart Primers for T7 IVT (System Biosciences) and Quick-Amp Labeling Kit One-Color (Agilent Technologies) and following manufacturer’s protocols.  cRNA yield and integrity were determined using NanoDrop ND-1000 (peqlab) and 2100 Bioanalyzer

growth_protocol: The S. erythraea NRRL23338 type strain and ABE1441 industrial overproducing strain were grown as described previously (Kirm et al., Miocrobial Cell Factories, 2013; PMID: 24341557).

extract_protocol: Cultures were fixed and RNA was isolated as described previously (Kirm e tal., 2013). Following DNase digestion, samples were cleaned using Rneasy MinElute (Qiagen) and their quality and quantity was controlled by 2100 Bioanalyzer and RNA 6000 Nano LabChip Kits (Agilent technologies).

treatment_protocol: Cultures were sampled in 4 time points of the fermentation process: at the beginning of fermentation (TP1), at the start of erythomycine production (TP2), at full production (TP3) and at the stationary bacterial growth phase (TP4).

tag: genotype/phenotype

value: wild type

tag: fermentation batch

value: stationary bacterial growth phase (TP4)

tag: time (h)

tag: sample type

value: bacterial cells from fermentation process


title: wild-type strain, time point 4, replicate 2


title: wild-type strain, time point 4, replicate 3


title: high-producer strain, time point 4, replicate 3

source_name: high-producer strain_time point 4

value: erythromycin high-producing strain


title: H1N1 DEE3 Subject 5, Hour 45

description:
H1N1_DEE3_SAMPLE_88
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 45.

value: hour 45

value: H1N1 DEE3 subject 5


title: H1N1 DEE3 Subject 5, Hour 29

description:
H1N1_DEE3_SAMPLE_86
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 29.

value: peripheral blood

value: hour 29


title: high-producer strain, time point 4, replicate 2


title: H1N1 DEE3 Subject 5, Hour 21

description:
H1N1_DEE3_SAMPLE_85
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 21.

value: hour 21


title: H1N1 DEE3 Subject 5, Hour 12

description:
H1N1_DEE3_SAMPLE_84
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 12.

value: hour 12


title: high-producer strain, time point 4, replicate 1


title: wild-type strain, time point 3, replicate 3

source_name: wild-type strain_time point 3

value: full production of erythomycine (TP3)


title: high-producer strain, time point 3, replicate 3

source_name: high-producer strain_time point 3


title: H1N1 DEE3 Subject 5, Hour 0

description:
H1N1_DEE3_SAMPLE_82
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 5, Hour -21

description:
H1N1_DEE3_SAMPLE_81
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour -21.

value: hour -21


title: high-producer strain, time point 3, replicate 2


title: H1N1 DEE3 Subject 5, Hour 36

description:
H1N1_DEE3_SAMPLE_87
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 36.

value: hour 36


title: high-producer strain, time point 3, replicate 1


title: H1N1 DEE3 Subject 4, Hour 142

description:
H1N1_DEE3_SAMPLE_79
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 142.

value: hour 142

value: H1N1 DEE3 subject 4


title: H1N1 DEE3 Subject 4, Hour 118

description:
H1N1_DEE3_SAMPLE_77
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 4, Hour 125

description:
H1N1_DEE3_SAMPLE_78
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 125.

value: hour 125


title: wild-type strain, time point 2, replicate 2

source_name: wild-type strain_time point 2

value: wild type

value: start of erythomycine production (TP2)


title: H1N1 DEE3 Subject 5, Hour 5

description:
H1N1_DEE3_SAMPLE_83
Gene expression profile from peripheral blood of H1N1 DEE3 subject 5, hour 5.

value: hour 5


title: wild-type strain, time point 2, replicate 3

value: bacterial cells from fermentation process


title: wild-type strain, time point 3, replicate 2


title: high-producer strain, time point 2, replicate 3

source_name: high-producer strain_time point 2

value: erythromycin high-producing strain


title: high-producer strain, time point 2, replicate 2


title: H1N1 DEE3 Subject 4, Hour 93

description:
H1N1_DEE3_SAMPLE_74
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 93.

value: peripheral blood

value: hour 93


title: H1N1 DEE3 Subject 4, Hour 101

description:
H1N1_DEE3_SAMPLE_75
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 101.

value: hour 101


title: high-producer strain, time point 2, replicate 1


title: H1N1 DEE3 Subject 4, Hour 84

description:
H1N1_DEE3_SAMPLE_73
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 4, Hour 108

description:
H1N1_DEE3_SAMPLE_76
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 4, Hour 166

description:
H1N1_DEE3_SAMPLE_80
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 166.

value: hour 166


title: wild-type strain, time point 1, replicate 1

source_name: wild-type strain_time point 1

value: beginning of fermentation (TP1)


title: H1N1 DEE3 Subject 4, Hour 60

description:
H1N1_DEE3_SAMPLE_70
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 4, Hour 69

description:
H1N1_DEE3_SAMPLE_71
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 4, Hour 53

description:
H1N1_DEE3_SAMPLE_69
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 53.

value: hour 53

value: H1N1 DEE3 subject 4


title: H1N1 DEE3 Subject 4, Hour 77

description:
H1N1_DEE3_SAMPLE_72
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 77.

value: hour 77


title: wild-type strain, time point 2, replicate 1

value: wild type


title: wild-type strain, time point 1, replicate 2


title: high-producer strain, time point 1, replicate 3

source_name: high-producer strain_time point 1


title: H1N1 DEE3 Subject 4, Hour 45

description:
H1N1_DEE3_SAMPLE_68
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 4, Hour 36

description:
H1N1_DEE3_SAMPLE_67
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 36.

value: hour 36


title: high-producer strain, time point 1, replicate 1

value: bacterial cells from fermentation process


title: H1N1 DEE3 Subject 4, Hour -21

description:
H1N1_DEE3_SAMPLE_61
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour -21.

value: hour -21


title: high-producer strain, time point 1, replicate 2

value: erythromycin high-producing strain


title: H1N1 DEE3 Subject 4, Hour 12

description:
H1N1_DEE3_SAMPLE_64
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 12.

value: peripheral blood

value: hour 12


title: H1N1 DEE3 Subject 4, Hour 21

description:
H1N1_DEE3_SAMPLE_65
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 21.

value: hour 21


title: H1N1 DEE3 Subject 4, Hour 0

description:
H1N1_DEE3_SAMPLE_62
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 0.

value: hour 0


title: H1N1 DEE3 Subject 3, Hour 166

description:
H1N1_DEE3_SAMPLE_60
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 166.

value: hour 166

value: H1N1 DEE3 subject 3


title: H1N1 DEE3 Subject 3, Hour 142

description:
H1N1_DEE3_SAMPLE_59
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 3, Hour 101

description:
H1N1_DEE3_SAMPLE_55
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 3, Hour 93

description:
H1N1_DEE3_SAMPLE_54
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 3, Hour 77

description:
H1N1_DEE3_SAMPLE_52
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 77.


title: H1N1 DEE3 Subject 3, Hour 84

description:
H1N1_DEE3_SAMPLE_53
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 3, Hour 69

description:
H1N1_DEE3_SAMPLE_51
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 69.

value: hour 69


title: H1N1 DEE3 Subject 4, Hour 5

description:
H1N1_DEE3_SAMPLE_63
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 5.

value: hour 5

value: H1N1 DEE3 subject 4


title: H1N1 DEE3 Subject 3, Hour 29

description:
H1N1_DEE3_SAMPLE_46
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 29.

value: hour 29


title: H1N1 DEE3 Subject 3, Hour 53

description:
H1N1_DEE3_SAMPLE_49
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 3, Hour 108

description:
H1N1_DEE3_SAMPLE_56
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 3, Hour 36

description:
H1N1_DEE3_SAMPLE_47
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 36.

value: hour 36


title: H1N1 DEE3 Subject 3, Hour 21

description:
H1N1_DEE3_SAMPLE_45
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 21.

value: peripheral blood


title: H1N1 DEE3 Subject 4, Hour 29

description:
H1N1_DEE3_SAMPLE_66
Gene expression profile from peripheral blood of H1N1 DEE3 subject 4, hour 29.


title: H1N1 DEE3 Subject 3, Hour 45

description:
H1N1_DEE3_SAMPLE_48
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 45.

value: hour 45


title: H1N1 DEE3 Subject 3, Hour 118

description:
H1N1_DEE3_SAMPLE_57
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 118.

value: hour 118


title: H1N1 DEE3 Subject 3, Hour 125

description:
H1N1_DEE3_SAMPLE_58
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 125.

value: hour 125


title: H1N1 DEE3 Subject 3, Hour 12

description:
H1N1_DEE3_SAMPLE_44
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 3, Hour 0

description:
H1N1_DEE3_SAMPLE_42
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 0.

value: hour 0

value: H1N1 DEE3 subject 3


title: H1N1 DEE3 Subject 3, Hour 5

description:
H1N1_DEE3_SAMPLE_43
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 5.


title: H1N1 DEE3 Subject 2, Hour 125

description:
H1N1_DEE3_SAMPLE_38
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 125.

value: H1N1 DEE3 subject 2


title: H1N1 DEE3 Subject 3, Hour -21

description:
H1N1_DEE3_SAMPLE_41
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 2, Hour 142

description:
H1N1_DEE3_SAMPLE_39
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 142.

value: hour 142


title: H1N1 DEE3 Subject 2, Hour 166

description:
H1N1_DEE3_SAMPLE_40
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 166.

value: hour 166


title: H1N1 DEE3 Subject 2, Hour 101

description:
H1N1_DEE3_SAMPLE_35
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 101.

value: hour 101


title: H1N1 DEE3 Subject 2, Hour 108

description:
H1N1_DEE3_SAMPLE_36
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 108.


title: H1N1 DEE3 Subject 2, Hour 118

description:
H1N1_DEE3_SAMPLE_37
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 118.


title: H1N1 DEE3 Subject 2, Hour 77

description:
H1N1_DEE3_SAMPLE_32
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 77.

value: hour 77


title: H1N1 DEE3 Subject 2, Hour 69

description:
H1N1_DEE3_SAMPLE_31
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 69.

value: hour 69


title: LRRK2KO MG LPS 24h rep1

city: Bethesda

first: Lixin

last: Sun

address: 35 Convent Drive

institute: NIH/NIA

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing:
Illumina BeadStudio software suite: quantile normalization method was applied to generate expression values for each probe.
non_normalized.txt contains non-normalized signal count data and detection p-value

source_name: mouse brain

label_protocol: Biotinylated cRNA were prepared with the Ambion Illumina Total Prep RNA Amplification kit

extract_protocol: RNA was extracted with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

tag: age

value: brain

tag: cell type

value: microglis cells

tag: treated with

value: LPS for 24hrs


title: H1N1 DEE3 Subject 2, Hour 84

description:
H1N1_DEE3_SAMPLE_33
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 84.

value: peripheral blood

value: hour 84


title: H1N1 DEE3 Subject 2, Hour 53

description:
H1N1_DEE3_SAMPLE_29
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 53.

value: hour 53


title: H1N1 DEE3 Subject 2, Hour 93

description:
H1N1_DEE3_SAMPLE_34
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 93.

value: hour 93


title: H1N1 DEE3 Subject 3, Hour 60

description:
H1N1_DEE3_SAMPLE_50
Gene expression profile from peripheral blood of H1N1 DEE3 subject 3, hour 60.

value: hour 60


title: H1N1 DEE3 Subject 2, Hour 60

description:
H1N1_DEE3_SAMPLE_30
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 60.


title: H1N1 DEE3 Subject 2, Hour 45

description:
H1N1_DEE3_SAMPLE_28
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 45.

value: hour 45


title: Ntg MG LPS 24h rep1


title: LRRK2KO MG PBS 24h rep1

value: PBS for 24hrs


title: Ntg MG PBS 24h rep1


title: LRRK2KO MG LPS 6h rep1

value: LPS for 6hrs


title: H1N1 DEE3 Subject 2, Hour 36

description:
H1N1_DEE3_SAMPLE_27
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 36.

value: hour 36

value: H1N1 DEE3 subject 2


title: 13. Sca1-tomato-Lmo2 thymus cells, biological replicate 6

city: Salamanca

first: Isidro

last: Sánchez García

address: Campus Miguel de Unamuno

department: Centro de inv. del Cáncer (CIC).

country: Spain

institute: Inst. de Inv. Biomédica de Salamanca (IBSAL). H. U. de Salamanca. Inst. de Biología Molecular y Celular del Cáncer (IBMCC).

description: Gene expression data from leukemic Sca1-TOMATO-Lmo2 thymus cells

hyb_protocol: Samples were hybridized using Affymetrix hybridization kit materials • Washing and scanning were performed using GeneChip System of Affymetrix (GeneChip Hybridization Oven 640, GeneChip Fluidics Station 450)

scan_protocol: Affymetrix Gene ChIP Scanner 3000 7G

data_processing: The RMA function provided by the package oligo from R/Bioconductor was applied to the raw expression data.

source_name: leukemic Sca1-TOMATO-Lmo2 thymus cells

label_protocol: Samples were enzymatically fragmented and biotinylated using the WT Terminal Labeling Kit (Ambion)

growth_protocol: Animals were housed in animal facility.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

value: Thymus

tag: genotype


title: 15. Sca1-tomato-Lmo2 thymus cells, biological replicate 8

tag: tissue


title: 16. Sca1-tomato-Lmo2 thymus cells, biological replicate 9


title: 12. Sca1-tomato-Lmo2 thymus cells, biological replicate 5


title: H1N1 DEE3 Subject 2, Hour 29

description:
H1N1_DEE3_SAMPLE_26
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 29.

tag: virus

value: hour 29


title: 11. Sca1-tomato-Lmo2 thymus cells, biological replicate 4


title: 14. Sca1-tomato-Lmo2 thymus cells, biological replicate 7


title: 17. Sca1-tomato-Lmo2 thymus cells, biological replicate 10


title: Ntg MG LPS 6h rep1


title: H1N1 DEE3 Subject 2, Hour 21

description:
H1N1_DEE3_SAMPLE_25
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 21.

tag: time point

value: hour 21


title: 10. Sca1-tomato-Lmo2 thymus cells, biological replicate 3


title: H1N1 DEE3 Subject 2, Hour 5

description:
H1N1_DEE3_SAMPLE_23
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 5.

value: hour 5

tag: subject


title: 09. Sca1-tomato-Lmo2 thymus cells, biological replicate 2


title: H1N1 DEE3 Subject 2, Hour 12

description:
H1N1_DEE3_SAMPLE_24
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 12.

value: hour 12


title: 08. Sca1-tomato-Lmo2 thymus cells, biological replicate 1


title: 07. Sca1-tomato-Lmo2 Nu/Nu bone marrow cells, biological replicate 3

description: Gene expression data from leukemic Sca1-TOMATO-Lmo2 Nu/Nu bone marrow cells

value: Bone marrow

value: Sca1-TOMATO-Lmo2 Nu/Nu


title: H1N1 DEE3 Subject 2, Hour 0

description:
H1N1_DEE3_SAMPLE_22
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour 0.

value: peripheral blood

value: hour 0


title: 05. Sca1-tomato-Lmo2 Nu/Nu bone marrow cells, biological replicate 1

source_name: leukemic Sca1-TOMATO-Lmo2 Nu/Nu bone marrow cells


title: H1N1 DEE3 Subject 1, Hour 166

description:
H1N1_DEE3_SAMPLE_20
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 166.

value: hour 166

value: H1N1 DEE3 subject 1


title: H1N1 DEE3 Subject 1, Hour 142

description:
H1N1_DEE3_SAMPLE_19
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 142.

value: hour 142


title: 04. Control Nude bone marrow cells, biological replicate 4

description: Gene expression data from Control Nude thymus cells

source_name: Control Nude thymus cells

value: nude


title: H1N1 DEE3 Subject 2, Hour -21

description:
H1N1_DEE3_SAMPLE_21
Gene expression profile from peripheral blood of H1N1 DEE3 subject 2, hour -21.

value: hour -21


title: H1N1 DEE3 Subject 1, Hour 118

description:
H1N1_DEE3_SAMPLE_17
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 118.

value: hour 118


title: 03. Control Nude bone marrow cells, biological replicate 3


title: STAM 12 weeks (1244_2.4)

city: Jefferson

first: Aline

last: de Conti

state: Arkansas

address: 3900 NCTR Road

department: Biochmical Toxicology

institute: FDA-NCTR

hyb_protocol: 0.6 ug of Cy3-labelled cRNA (specific activity > 9.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 25 ul containing 25x Agilent fragmentation buffer and 10x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 25 ul of 2x Agilent GEx hybridization buffer HI-RPM was added to the fragmentation mixture and hybridized to SurePrint G3 Mouse Gene Expression v2 8x60K Microarray (G4858A), Agilent, for 17 hours at 65°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent).

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (Agilent Technologies G2600D SG14324425) using one color scan setting for G3 Microarray format 8x60k (Scan Area 61x21.6 mm, Scan resolution 3um, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: The scanned images were analyzed with Feature Extraction Software 9.1 (Agilent) using default parameters (protocol GE1_1105_Oct12 and Grid: 074809_D_F_20150624) to obtain background subtracted and spatially detrended Processed Signal intensities.  Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded.

source_name: STAM model, euthanized after 12 weeks

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.6 ug RNA using the Quick Amp Labeling Kit, one-color (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

growth_protocol: Liver samples from male C57bl/6j submitted to STAMTM protocol were obtained from Stelic Institute Co.

extract_protocol: Total RNA was extracted from liver tissue using miRNeasy Mini kits (Qiagen, Valencia, CA) according to the manufacturer’s instructions. RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).

treatment_protocol: Mice were submitted to STAMTM model. This model has been developed by low-dose streptozotocin injection to induce a diabetic state in mice and high-fat diet feeding to develop steatosis and mild chronic hepatic inflammation from 4 weeks of age onwards. This mouse model progresses from NAFLD to NASH at 8 weeks of age and develops hepatocellular carcinoma at 16 weeks of age.

tag: protocol

value: submitted to STAM model

value: 12 weeks

value: fibrosis

value: liver

value: male


title: STAM 20 weeks; tumor tissue (1243_1.4)

source_name: STAM model, euthanized after 20 weeks, tumor tissue

value: 20 weeks

value: full-fledged HCC

value: liver (tumor tissue)

tag: gender


title: H1N1 DEE3 Subject 1, Hour 108

description:
H1N1_DEE3_SAMPLE_16
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 108.

value: hour 108


title: H1N1 DEE3 Subject 1, Hour 125

description:
H1N1_DEE3_SAMPLE_18
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 125.

value: peripheral blood

value: hour 125


title: H1N1 DEE3 Subject 1, Hour 84

description:
H1N1_DEE3_SAMPLE_13
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 84.

value: hour 84


title: H1N1 DEE3 Subject 1, Hour 101

description:
H1N1_DEE3_SAMPLE_15
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 101.

value: hour 101

value: H1N1 DEE3 subject 1


title: STAM 20 weeks; tumor tissue (1234_1.4)

tag: strain


title: 01. Control Nude bone marrow cells, biological replicate 1

value: Bone marrow

value: nude


title: 06. Sca1-tomato-Lmo2 Nu/Nu bone marrow cells, biological replicate 2

value: Sca1-TOMATO-Lmo2 Nu/Nu


title: STAM 20 weeks; tumor tissue (1235_1.4)

value: submitted to STAM model

tag: disease state


title: H1N1 DEE3 Subject 1, Hour 93

description:
H1N1_DEE3_SAMPLE_14
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 93.

value: hour 93


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 10

description: Gene expression data from leukemic Sca1-TOMATO-Lmo2 thymus cells

value: Thymus

value: leukemic


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 11


title: 02. Control Nude bone marrow cells, biological replicate 2


title: STAM 20 weeks; non-tumor tissue (1235_2.1)

source_name: STAM model, euthanized after 20 weeks, non-tumor tissue

value: liver (non-tumor tissue)

value: male


title: STAM 20 weeks; tumor tissue (1244_1.1)

value: 20 weeks

value: full-fledged HCC


title: STAM 20 weeks; non-tumor tissue (1244_2.2)


title: STAM 20 weeks; non-tumor tissue (1234_2.3)


title: STAM 12 weeks (1243_1.2)

value: 12 weeks

value: fibrosis

value: liver


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 9


title: H1N1 DEE3 Subject 1, Hour 77

description:
H1N1_DEE3_SAMPLE_12
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 77.

value: peripheral blood

value: hour 77


title: H1N1 DEE3 Subject 1, Hour 60

description:
H1N1_DEE3_SAMPLE_10
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 60.

value: hour 60

value: H1N1 DEE3 subject 1


title: H1N1 DEE3 Subject 1, Hour 69

description:
H1N1_DEE3_SAMPLE_11
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 69.

value: hour 69


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 6


title: STAM 12 weeks (1235_2.3)


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 7


title: STAM 20 weeks; non-tumor tissue (1243_2.3)


title: STAM 8 weeks (1244_1.3)

source_name: STAM model, euthanized after 8 weeks

value: 8 weeks

value: steatohepatitis


title: H1N1 DEE3 Subject 1, Hour 45

description:
H1N1_DEE3_SAMPLE_8
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 45.

value: hour 45


title: STAM 8 weeks (1235_1.2)

value: submitted to STAM model


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 5

value: Thymus

value: leukemic


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 3


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 4


title: H1N1 DEE3 Subject 1, Hour 12

description:
H1N1_DEE3_SAMPLE_4
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 12.

value: hour 12


title: H1N1 DEE3 Subject 1, Hour 5

description:
H1N1_DEE3_SAMPLE_3
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 5.

value: hour 5


title: WT thymus cells, biological replicate 4

description: Gene expression data from WT thymus cells

source_name: WT thymus cells

value: wild type

value: healthy


title: WT thymus cells, biological replicate 3


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 2


title: Sca1-tomato-Lmo2 thymus cells, biological replicate 1


title: STAM 6 weeks (1244_1.4)

source_name: STAM model, euthanized after 6 weeks

value: 6 weeks

value: steatosis

value: male


title: Control 20 weeks (1234_2.4)

source_name: 20 weeks age matched control

value: control

value: 20 weeks

value: liver


title: H1N1 DEE3 Subject 1, Hour 53

description:
H1N1_DEE3_SAMPLE_9
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 53.

value: peripheral blood

value: hour 53

value: H1N1 DEE3 subject 1


title: Control 20 weeks (1235_1.1)


title: H1N1 DEE3 Subject 1, Hour 29

description:
H1N1_DEE3_SAMPLE_6
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 29.

value: hour 29


title: STAM 12 weeks (1234_1.2)

value: submitted to STAM model

value: 12 weeks

value: fibrosis


title: Control 20 weeks (1244_2.3)


title: WT thymus cells, biological replicate 2

value: Thymus


title: H1N1 DEE3 Subject 1, Hour 0

description:
H1N1_DEE3_SAMPLE_2
Gene expression profile from peripheral blood of H1N1 DEE3 subject 1, hour 0.

value: hour 0


title: Sca1-tomato-Lmo2  tomato-positive thymus T cells replicate 5

description: Gene expression data from preleukemic Sca1-TOMATO-LMO2  TOMATO positive thymus T cells

value: TOMATO positive T cells

value: preleukemic


title: WT thymus cells, biological replicate 1

value: wild type

value: healthy


title: Control 12 weeks (1234_1.3)

source_name: 12 weeks age matched control

value: male


title: STAM 6 weeks (1234_2.1)

value: 6 weeks

value: steatosis


title: Sca1-tomato-Lmo2  tomato-positive thymus T cells replicate 3

source_name: preleukemic Sca1-TOMATO-LMO2  TOMATO positive thymus T cells


title: Sca1-tomato-Lmo2  tomato-positive thymus T cells replicate 4


title: Control 20 weeks (1243_1.3)

value: control

value: 20 weeks

value: liver


title: Sca1-tomato-Lmo2  tomato-positive thymus T cells replicate 2


title: Sca1-tomato-Lmo2  tomato-positive thymus T cells replicate 1


title: Sca1-tomato-Lmo2  tomato-negative thymus T cells replicate 5

description: Gene expression data from preleukemic Sca1-TOMATO-LMO2  TOMATO negative thymus T cells

value: TOMATO negative T cells


title: slide 344020

city: Jena

first: Akos

middle: T

last: Kovacs

address: Neugasse 23

department: Institute of Microbiology

country: Germany

institute: Friedrich Schiller University of Jena

description: comparison of B subtilis 168 on 2xSG liquid medium with and without manganese

hyb_protocol: The protocol was performed as described in Lulko, et. al. J. Mol. Microbiol. Biotechnol. 12:82-95 PMID: 17183215

scan_protocol: Scanning was done using the Genepix 4200AL laser scanner

data_processing: Dual-channel array images were analyzed with ArrayPro 4.5 software (Media Cybernetics Inc.). Spots were screened visually to identify those of low quality. Slide data were processed with MicroPreP as previously described (den Hengst et al J. Biol. Chem. 280:34332-34342; PMID: 16040604). Prior to analysis, automatically and manually flagged spots and spots with very low background subtracted signal intensity (5% of the weakest spots [sum of Cy3 and Cy5 net signals]) were filtered out of all data sets.Net signal intensities were calculated by grid-based background subtraction. A grid-based Lowess transformation was performed for slide normalization, negative and empty values were removed, and outliers were removed by the deviation test. Expression ratios were calculated for the wild type strain grown in a medium with manganese omitted over a medium with manganese added.. Further analysis was performed with a Cyber-T Student t test for paired data.

organism: Bacillus subtilis subsp. subtilis str. 168

source_name: Net{A}

label_protocol: Total RNA was incubated for 16 h at 42°C in the presence of 400 U Superscript III RNase H reverse transcriptase (Invitrogen), 0.2 mM aminoallyl dUTP (Amersham), 0.5 mM dATP, 0.5 mM dCTP, 0.5 mM dGTP, 0.3 mM dTTP, and 3.2 g random nonamers. The synthesized cDNA was then labeled by coupling either Cy3 or Cy5 to the dUTP aminoallyl reactive group (CyScribe postlabeling kit; Amersham Biosciences) and was purified using NucleoSpin Extract II columns

growth_protocol: For samples 1-3: B subtilis 168 was spotted on 2xSG agar medium with and without added manganese and grown for 3 days at 30C. Cells were harvested from the agar plate and RNA purification was performed on the samples. For samples 4-7: Bacillus subtilis was inoculated 1:100 in 2xSG liquid medium and grown overnight. Cells were harvested with centrifugation (10000rpm 2 min) and frozen in liquid nitrogen before RNA purification was performed.

extract_protocol: RNA was isolated and purified using the High Pure RNA isolation kit (Roche diagnostics) as described (Lulko, et. al. J. Mol. Microbiol. Biotechnol. 12:82-95 PMID: 17183215) and biofilm colony specific modifications are described in Kovacs and Kuipers (J.Bacteriol 2011 193:998-1002 PMID: 21097620). Contaminating genomic DNA was removed by treatment with RNase-free DNase I (Roche diagnostics). RNA was isolated from three or four biological replicate cultures.

treatment_protocol: no treatment

value: 2xSG liquid medium without addition of manganese

source_name: Net{B}

value: 2xSG liquid medium with 0.1mM manganese


title: slide 344016


title: slide 344012


title: Control 8 weeks (1235_1.3)

source_name: 8 weeks age matched control

value: 8 weeks


title: Control 12 weeks (1243_2.2)

value: 12 weeks


title: slide 188195

description: comparison of B subtilis 168 on 2xSG agar medium with and without manganese

value: 2xSG agar medium without addition of manganese

value: 2xSG agar medium with 0.1mM manganese


title: Control 8 weeks (1244_2.1)


title: slide 344024


title: Sca1-tomato-Lmo2  tomato-negative thymus T cells replicate 4

source_name: preleukemic Sca1-TOMATO-LMO2  TOMATO negative thymus T cells

value: Thymus


title: Control 6 weeks (1243_1.1)

source_name: 6 weeks age matched control


title: Sca1-tomato-Lmo2  tomato-negative thymus T cells replicate 3

value: preleukemic


title: Control 12 weeks (1244_1.2)


title: Control 8 weeks (1234_2.2)


title: slide 188194


title: slide 188193


title: Sca1-tomato-Lmo2  tomato-negative thymus T cells replicate 2


title: Control 6 weeks (1235_2.2)


title: Sca1-tomato-Lmo2  tomato-negative thymus T cells replicate 1


title: Control 6 weeks (1234_1.1)