title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_F06_464060

label_protocol: See mage-tab files linked to series entry for additional details


title: meyer-00180: 5500024037497121008340.F05

status: Public on Jun 09 2016

type: RNA

city: Rockville

first: Mervi

last: Heiskanen

state: MD

address: 9609 Medical Center Drive, 1W378

department: CBIIT

country: USA

institute: NCI

hyb_protocol: See mage-tab files linked to series entry for additional details

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: brain

tag: diseasestate

value: GLIOBLASTOMA MULTIFORME

tag: organismpart

value: Brain

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

value: GBM

tag: individual

tag: sample

tag: tissue anatomic site

value: NOT SPECIFIED

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: 5500024037497121008340.E07

scan_protocol: See mage-tab files linked to series entry for additional details

value: OVERLAPPING LESION OF BRAIN

value: MALIGNANT


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B08_516420

data_processing: See mage-tab files linked to series entry for additional details

value: Glioblastoma Multiforme

value: Untreated primary (De Nova) GBM

value: Female


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_F09_464038

extract_protocol: See mage-tab files linked to series entry for additional details


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_F09_464038


title: meyer-00180: 5500024035100021608462.B06


title: meyer-00180: 5500024035736031208615.D03


title: Colo H 24h H1650 cell

status: Public on Jun 10 2016

city: Taipei

first: Su-Yu

last: Chen

address: No.1, Changde St., Zhongzheng Dist., Taipei City 100, Taiwan (R.O.C.)

department: Department of Clinical Laboratory Sciences and Medical Biotechnology

country: Taiwan

institute: National Taiwan University

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

source_name: NCI-H1650 cells treated for colo H for 24h

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: The H1650 cell was cultivated in RPMI-1640 medium. Cultural media was supplemented with 10% heat-inactivated fetal calf serum (FBS), penicillin (100 U/mL), streptomycin sulfate (100 μg/mL), amphotericin B (250 ng/mL), L-glutamine (2 mM), and non-essential amino acids (0.1 mM). The cells were cultivated at 37 °C in humidified incubator supplied with 5% CO2.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: H1650 cells (1000000 cells) were seeded in 10-cm Petri dishes and allowed to adhere, and then treated with colo H (40 μM) for 12 or 24h.

tag: cell line

tag: cell type

value: lung cancer


title: CXCR4 wild-type baseline replicate 3

city: Boston

first: Zachary

middle: Richard

last: Hunter

state: MA

address: 450 Brookline Ave, Mayer 544

institute: Dana-Farber Cancer Institute

description: Gene expression data from CXCR4 WT transduced BCWM.1 cell lines at baseline

hyb_protocol: Hybridization was preformed following manufactures instructions

scan_protocol: GeneChip Scanner 3000 7G

data_processing: CEL files were loaded into bioconductor and normalized using rma() from the oligo package. Data was then analyzed using limma.

source_name: CXCR4 WT expressing BCWM.1

label_protocol: Labeling was preformed following manufactures instructions

growth_protocol: Five days after transduction, GFP positive cells were sorted and used for functional studies. Cells were cultured in 10% FBS

extract_protocol: RNA was extracted using the AllPrep mini kit (Qiagen, Valencia, CA) as per manufactures protocol.

treatment_protocol: Cells were harvested at baseline and post 2 hour stimulation with 50nM CXCL12

value: Baseline

tag: cxcr4 mutation

value: wild-type

tag: batch


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_F06_464060

value: Male


title: CXCR4 wild-type CXCL12 stimulated replicate 1

description: Gene expression data from CXCR4 WT transduced BCWM.1 cell lines following two hour CXCL12 stimulation

value: Stimulated


title: CXCR4 wild-type CXCL12 stimulated replicate 2


title: CXCR4 wild-type baseline replicate 1


title: meyer-00180: 5500024035736031208615.F05


title: Rosette of cat2-2, treated, biological rep 3

city: Helsinki

first: Cezary

last: Waszczak

address: Viikinkaari 1

department: Dept. of Biosciences

country: Finland

institute: University of Helsinki

description:
cat2-2_photorespiratory conditions_3
Frag-Biotin-aRNA

hyb_protocol: A mixture of purified and fragmented biotinylated aRNA and hybridisation controls (Affymetrix) was hybridised on Affymetrix' Arabidopsis ATH1 Genome arrays followed by staining and washing in a GeneChip® Fluidics Station 450 (Affymetrix) according to the manufacturer’s procedures.

scan_protocol: To assess the raw probe signal intensities, chips were scanned using a GeneChip® scanner 3000 (Affymetrix).

data_processing: Background correction, normalization and calculation of expression values were performed with Robust Multi-array Average method.

label: Biotin

organism: Arabidopsis thaliana

source_name: rosette of cat2-2, treated

label_protocol: RNA concentration and purity were determined spectrophotometrically using the NanoDrop ND-1000 (NanoDrop Technologies) and RNA integrity was assessed using a Bioanalyser 2100 (Agilent). Per sample, an amount of 100 ng of total RNA spiked with bacterial RNA transcript positive controls (Affymetrix) was amplified and labeled using the GeneChip 3' IVT express kit (Affymetrix). All steps were carried out according to the manufacturer's protocol (Affymetrix).

growth_protocol: Arabidopsis thaliana plants were grown on Petri dishes (150 x 25 mm, Becton-Dickinson, USA) on full-strength Murashige and Skoog agar solidified medium supplemented with 1% sucrose, 100 mg/L myo-inositol, nicotinic acid 0.5 mg/L, pyridoxine 0.5 mg/L, thiamine 1 mg/L at 21°C and long day 16h light (100 μmol•m−2•s−1)/8h dark conditions. Each plate contained approx. 30 cat2-2 and 30 shr-6 cat2-2 plants.

extract_protocol: RNA was extracted with Spectrum Plant Total RNA Kit (Sigma).

treatment_protocol: After 21 days of growth, the surgical tape that sealed the plates (Micropore) was replaced by two layers of parafilm M (Bemis) to restrict gas exchange, then plants were transferred to a continuous light regime 100 μmol•m−2•s−1) for 24 hours. Shoot tissue was sampled in three biological replicates before (T = 0) and after 24 hours (T = 24H) of the treatment. Each replicate consisted of at least 15 rosettes.

tag: strain/background

tag: genotype/variation

tag: tissue

value: rosette

value: 22 days after sowing

tag: treatment

value: photorespiratory conditions

tag: time point


title: meyer-00180: 5500024035736031208615.E04

tag: diseasestate

value: GLIOBLASTOMA MULTIFORME

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite


title: Control H1650 cell

source_name: NCI-H1650 cells


title: cat2-2 atrbohD rep3

city: Gent

first: Patrick

last: Willems

address: Technologiepark 927

department: PSB

country: Belgium

institute: Ghent University

description: After 3 weeks of growth under mild photorespiratory-promoting conditions, leaf tissue from the three different genotypes (cat2, cat2 rbohD and cat2 rbohF) was harvested in triplicate.

hyb_protocol: Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C and at 60 rounds/min. The GeneChips were washed and stained in the Affymetrix Fluidics Station 400 and 450.

scan_protocol: GeneChips were scanned using the GeneChip Scanner 3000 7G.

data_processing: Normalised using GCRMA

source_name: Leaves

label_protocol: Biotinylated cRNA was prepared according to the standard Affymetrix protocol from 5 microg total RNA.

growth_protocol: Plants were grown in air from seeds under a 16 h/8 h day/night regime, relative humidity was 65%, and an irradiance of 200 μmol·m-2·s-1 was used to drive oxidative stress in the cat2 background plants. Arabidopsis Col-0, cat2, cat2 rbohD and cat2 rbohF were 3 week old before sampling.

extract_protocol: Three biological replicates were generated each consisting of a pool of leaves from at least 8 plants. Total RNA was isolated using Trizol Reagent (Life Technologies, Gaithersburg, USA).

treatment_protocol: After 3 weeks of growth in mild photorespiratory-promoting conditions, leaf tissue from the three different genotypes was harvested in triplicate. Design: 3 replicates x 3 genotypes (cat2, cat2 rbohD and cat2 rbohF)

tag: age

value: 3 weeks

tag: ecotype

value: cat2 rbohD


title: Colo H 12h H1650 cell

source_name: NCI-H1650 cells treated for colo H for 12h


title: Rosette of cat2-2, treated, biological rep 2

description:
cat2-2_photorespiratory conditions_2
Frag-Biotin-aRNA


title: CXCR4 wild-type baseline replicate 2


title: Rosette of cat2-2, untreated, biological rep 1

description:
cat2-2_CTRL_1
Frag-Biotin-aRNA

source_name: rosette of cat2-2, untreated

value: 21 days after sowing

value: control


title: Rosette of cat2-2, untreated, biological rep 2

description:
cat2-2_CTRL_2
Frag-Biotin-aRNA


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A08_400414

value: Brain

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: 5500024024987031607949.G12

value: GBM

value: TEMPORAL LOBE

value: MALIGNANT


title: meyer-00180: 5500024035736031208615.C07

value: NOT SPECIFIED


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_D02_786980


title: Rosette of cat2-2, treated, biological rep 1

description:
cat2-2_photorespiratory conditions_1
Frag-Biotin-aRNA

tag: strain/background

tag: genotype/variation


title: meyer-00180: 5500024037497121008340.B01


title: meyer-00180: 5500024030700072107989.G10


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A05_400376

value: Glioblastoma Multiforme

value: Untreated primary (De Nova) GBM


title: meyer-00180: 5500024024987031607949.C11


title: meyer-00180: 5500024030700072107989.C09


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F07_588268

value: Male


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B01_786964


title: meyer-00180: 5500024035100021608462.A01


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D03_586194


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B10_516404

value: Female


title: meyer-00180: 5500024037497121008340.C09

value: PARIETAL LOBE


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_C05_724136


title: meyer-00180: 5500024032848101507996.C04

value: FRONTAL LOBE


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A08_297946


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C01_586220


title: meyer-00180: 5500024056197041909864.A08


title: Rosette of cat2-2, untreated, biological rep 3

description:
cat2-2_CTRL_3
Frag-Biotin-aRNA

tag: tissue

value: rosette

tag: treatment


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B03_400400

tag: diseasestate


title: meyer-00180: 5500024035100021608462.A09

value: GLIOBLASTOMA MULTIFORME

tag: organismpart

value: OVERLAPPING LESION OF BRAIN


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_E07_691656

tag: clinicaldiagnosis


title: meyer-00180: 5500024032848101507996.F06

tag: Sex


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_B05_298096

tag: cancersite


title: meyer-00180: 5500024056197041909864.B05

tag: age


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_B04_298060


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E10_588216


title: meyer-00180: 5500024056197041909864.B04


title: meyer-00180: 5500024032848101507996.D01


title: meyer-00180: 5500014026072032607011.E07


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A09_400412


title: meyer-00180: 5500024037497121008340.B08

value: OCCIPITAL LOBE


title: meyer-00180: 5500014026072032607011.A07


title: meyer-00180: 5500024032848101507996.D02


title: meyer-00180: 5500024037497121008340.D06


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B11_400384


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_F02_464052


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E04_588236


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_F03_464050


title: meyer-00180: 5500024037497121008340.B07


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A03_516396


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_F03_464050


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_F02_464052


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E09_464012


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C07_586178


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E09_464012


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_B09_464090


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_B09_464090


title: meyer-00180: 5500024035100021608462.C01


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_C01_400442


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_C07_724176


title: meyer-00180: 5500024035736031208615.B01


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_B09_691756


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_F04_464048


title: meyer-00180: 5500024037497121008340.A08


title: meyer-00180: 5500024035736031208615.A09

value: ANAPLASTIC ASTROCYTOMA


title: meyer-00180: 5500024032848101507996.F03


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_H05_724162


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_D01_297926


title: meyer-00180: 5500024035736031208615.E07


title: meyer-00180: 5500024056197041909864.D01


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D04_586192


title: meyer-00180: 5500024037497121008340.B12


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_F04_464048


title: meyer-00180: 5500024030700072107989.A11


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A10_586062


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A02_298028


title: meyer-00180: 5500024056197041909864.A02


title: meyer-00180: 5500024032848101507996.F04


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A10_787024


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C11_787010


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D04_516296


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A03_400380


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C03_516426


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D10_586146


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_F08_464056


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B06_786974


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_F08_464056


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D01_464120


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D01_464120


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E03_588238


title: meyer-00180: 5500024035736031208615.D04


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C05_464104


title: meyer-00180: 5500024037497121008340.E03


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D09_586144


title: meyer-00180: 5500024037497121008340.F09


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C05_464104


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D07_464116


title: meyer-00180: 5500024037497121008340.E08


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A02_400378


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B06_516466


title: meyer-00180: 5500024056197041909864.C05


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_E09_691686


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C05_297954


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C06_464106


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C06_464106


title: meyer-00180: 5500024056197041909864.A03


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A03_297980


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C10_464098


title: meyer-00180: 5500024030700072107989.C10


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C10_464098


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A10_400410


title: meyer-00180: 5500014026072032607011.B05


title: meyer-00180: 5500024024987031607949.C12


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_E07_723866


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_C02_400444


title: meyer-00180: 5500024037497121008340.A01


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E04_464026


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_B07_691694


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F08_588270


title: meyer-00180: 5500014026072032607011.F07


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_B09_723950


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D07_464116


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A02_586094


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_D05_724140


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_B09_724152


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B09_400388


title: meyer-00180: 5500024035100021608462.B03


title: meyer-00180: 5500024035736031208615.G07


title: meyer-00180: 5500024056197041909864.A09


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A09_298056


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_A05_724116


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A05_787018


title: meyer-00180: 5500024035736031208615.D01


title: meyer-00180: 5500024056197041909864.A01


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A01_298034


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_F07_724038


title: meyer-00180: 5500024032848101507996.G03


title: meyer-00180: 5500024056197041909864.A06


title: cat2-2 rep 1

value: 3 weeks

tag: ecotype


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E04_464026

value: Brain

tag: clinical diagnosis


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A09_516380

tag: individual


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_G06_588196

tag: sample


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A06_298074

value: GBM

tag: tissue anatomic site


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E10_464014

tag: pathologic status


title: meyer-00180: 5500024035736031208615.C03

tag: histologic diagnosis


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_G09_723956


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C06_298094


title: meyer-00180: 5500024056197041909864.C06


title: meyer-00180: 5500014026072032607011.D05


title: meyer-00180: 5500024056197041909864.B07


title: meyer-00180: 5500024035736031208615.C05


title: meyer-00180: 5500024037497121008340.F02


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_G03_588252


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_B07_297984


title: meyer-00180: 5500014026072032607011.G05


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A09_586058


title: meyer-00180: 5500024056197041909864.B06


title: meyer-00180: 5500024032848101507996.H03


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_B06_298078


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E09_588218


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B03_586208


title: meyer-00180: 5500024035736031208615.H03


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C12_586168


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_F01_464054


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_F01_464054


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E10_464014


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_G09_724166


title: meyer-00180: 5500024056197041909864.C08


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C06_786996


title: meyer-00180: SPANS_p_TCGA_Batch60_62_Expr_HT_HG-U133A_24-HTA_D09_692014


title: meyer-00180: 5500024024987031607949.B11


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C08_298024


title: meyer-00180: 5500024030700072107989.B09


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A03_787030


title: meyer-00180: 5500014026072032607011.B07


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A04_787028


title: meyer-00180: 5500024035736031208615.B03

value: TEMPORAL LOBE


title: meyer-00180: 5500024030700072107989.E08

value: MALIGNANT


title: meyer-00180: 5500024024987031607949.F10


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A06_400370


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B01_516436


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B07_586200


title: meyer-00180: 5500024037497121008340.E11

value: NOT SPECIFIED


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A04_400374

value: Glioblastoma Multiforme


title: meyer-00180: 5500024030700072107989.D09


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B03_516366

value: Untreated primary (De Nova) GBM


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E06_464006

value: Male


title: meyer-00180: 5500024037497121008340.E06


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C02_786958


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_B03_298026


title: meyer-00180: 5500024024987031607949.D11


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E06_464006


title: meyer-00180: SPANS_p_TCGA_Batch60_62_Expr_HT_HG-U133A_24-HTA_F09_691866


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A05_586074


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A11_787022


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D06_586188


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E02_588232

value: Female


title: meyer-00180: 5500024032848101507996.D03


title: meyer-00180: 5500024030700072107989.C08


title: meyer-00180: 5500024037497121008340.A02


title: meyer-00180: 5500024056197041909864.B03


title: meyer-00180: 5500024035736031208615.E01


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D03_516432


title: meyer-00180: 5500024030700072107989.B11

value: PARIETAL LOBE


title: meyer-00180: 5500024035736031208615.D09


title: meyer-00180: 5500024037497121008340.B05


title: meyer-00180: 5500024035736031208615.F01


title: meyer-00180: 5500024035736031208615.G01


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_G04_588254


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_H09_723968


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_D01_786982


title: meyer-00180: 5500024037497121008340.A04


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D04_464126


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D04_464126


title: meyer-00180: 5500024024987031607949.D10

value: FRONTAL LOBE


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_D02_298014


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F04_588262


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_C05_691664


title: meyer-00180: 5500024035736031208615.B10


title: meyer-00180: 5500024037497121008340.C02


title: meyer-00180: 5500024037497121008340.A12


title: meyer-00180: 5500024037497121008340.A06


title: meyer-00180: 5500024037497121008340.B09


title: meyer-00180: 5500024037497121008340.C07


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D02_464122


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C04_586218


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C10_586172


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A05_516414


title: meyer-00180: 5500024037497121008340.D04


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D02_464122


title: meyer-00180: 5500024024987031607949.E12


title: meyer-00180: 5500024030700072107989.E10


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C02_516392


title: meyer-00180: 5500024037497121008340.E09


title: meyer-00180: 5500024056197041909864.D02


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D07_586186


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A04_586086


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B02_400402


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C06_586180


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_E09_723996


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A10_298048


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D08_516336


title: meyer-00180: 5500024056197041909864.A10


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A01_586090


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_C09_723842


title: meyer-00180: 5500024032848101507996.B03


title: meyer-00180: 5500024030700072107989.H10


title: meyer-00180: 5500024024987031607949.H12


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B12_400440


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F10_588242


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A02_787032


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D02_516438


title: meyer-00180: 5500024035736031208615.H09


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A03_586082


title: meyer-00180: 5500024035736031208615.G03


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_D05_691768


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D10_464022


title: meyer-00180: 5500024032848101507996.C05


title: meyer-00180: 5500024035736031208615.G02


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_C09_691766


title: meyer-00180: 5500024037497121008340.A05


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_D09_691742


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C04_516328


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_F05_464062


title: meyer-00180: 5500024032848101507996.B06


title: meyer-00180: 5500024035736031208615.H05


title: meyer-00180: 5500024037497121008340.F07


title: meyer-00180: SPANS_p_TCGA_Batch60_62_Expr_HT_HG-U133A_24-HTA_G09_691928


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B12_586226


title: meyer-00180: 5500024035736031208615.F02


title: meyer-00180: 5500024037497121008340.A07


title: meyer-00180: 5500024035736031208615.A02


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C08_464110


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C08_464110


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C11_516340


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_G09_691658


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D06_516440


title: meyer-00180: SPANS_p_TCGA_Batch60_62_Expr_HT_HG-U133A_24-HTA_E09_691912


title: meyer-00180: 5500024035100021608462.C08

value: CEREBRUM


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D10_464022


title: meyer-00180: 5500024035100021608462.A11

value: GLIOBLASTOMA MULTIFORME


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_F05_464062


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C08_516462


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E02_464030


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A10_516472


title: meyer-00180: 5500024056197041909864.C10


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_F07_464058


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_F07_464058


title: meyer-00180: 5500024037497121008340.C04


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C10_297916


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_C09_724080


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B05_516398


title: meyer-00180: 5500024032848101507996.D05

value: OVERLAPPING LESION OF BRAIN


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A07_787014


title: meyer-00180: 5500024056197041909864.C09


title: meyer-00180: 5500024035736031208615.G06


title: meyer-00180: 5500024035100021608462.A07


title: meyer-00180: 5500024035736031208615.C04


title: meyer-00180: 5500024037497121008340.D03


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C06_516330


title: meyer-00180: 5500024035736031208615.B07


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E03_464024


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D07_516464


title: meyer-00180: 5500024056197041909864.C01


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E02_464030


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C01_298088


title: meyer-00180: 5500024032848101507996.E02


title: meyer-00180: 5500024032848101507996.G06


title: meyer-00180: 5500024035736031208615.E09


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A12_516376


title: meyer-00180: 5500024037497121008340.B10


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C09_298016


title: meyer-00180: 5500024037497121008340.E01


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A01_516368


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C01_516418


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B04_516390


title: meyer-00180: 5500024037497121008340.A11


title: meyer-00180: 5500024032848101507996.A03


title: meyer-00180: 5500014026072032607011.G07


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_G01_588248


title: meyer-00180: 5500024035100021608462.C04


title: meyer-00180: 5500014026072032607011.A05


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E03_464024


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B08_786978


title: meyer-00180: 5500024030700072107989.A10


title: meyer-00180: 5500024024987031607949.A12


title: meyer-00180: 5500024032848101507996.A04


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_H07_723918


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C03_786960


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_A05_691764


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_A09_691690


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_E09_723838


title: meyer-00180: 5500024032848101507996.E05


title: meyer-00180: 5500024035736031208615.B06


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_A07_724158


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C07_516424


title: meyer-00180: 5500024037497121008340.A10


title: meyer-00180: 5500024037497121008340.C03


title: meyer-00180: 5500024030700072107989.G08


title: meyer-00180: 5500024035736031208615.E03


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B01_586212


title: meyer-00180: 5500024035736031208615.D10


title: meyer-00180: 5500024024987031607949.H10


title: meyer-00180: 5500024037497121008340.C05


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E01_464028


title: meyer-00180: 5500024037497121008340.C01


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_G07_723860


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_H05_691802


title: meyer-00180: 5500024037497121008340.C06


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C05_516388


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A01_400382


title: meyer-00180: 5500024032848101507996.H02


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_H06_298000


title: meyer-00180: 5500024037497121008340.E02


title: meyer-00180: 5500024056197041909864.H06


title: meyer-00180: 5500024035736031208615.B09


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E05_464004


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C10_516326


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F06_588266


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E05_464004


title: meyer-00180: 5500024024987031607949.F12


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C03_464086


title: meyer-00180: 5500024030700072107989.F10


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C04_786962


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D05_464112


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C03_464086


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C12_516312


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E01_464028


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D05_464112


title: meyer-00180: 5500024037497121008340.C10

value: BRAIN, NOS


title: meyer-00180: 5500014026072032607011.H09


title: meyer-00180: 5500024030700072107989.H03


title: meyer-00180: 5500024035100021608462.B05


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B08_586202


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B04_786970


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_G07_691706


title: meyer-00180: 5500024024987031607949.B10


title: meyer-00180: 5500024037497121008340.A03

value: OCCIPITAL LOBE


title: meyer-00180: 5500024024987031607949.E10


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_C09_516402


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C11_464100


title: meyer-00180: 5500024037497121008340.F03


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_F05_724012


title: meyer-00180: 5500024030700072107989.D08


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C11_464100


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B06_586206


title: meyer-00180: 5500024032848101507996.F02


title: meyer-00180: 5500024035100021608462.C10


title: meyer-00180: 5500024035736031208615.H08


title: meyer-00180: 5500024035736031208615.D07


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_D09_723910


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_B09_297962


title: meyer-00180: 5500024056197041909864.B09


title: meyer-00180: 5500024037497121008340.D12


title: meyer-00180: 5500024035736031208615.C09


title: meyer-00180: 5500014026072032607011.E05


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D06_464114


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F02_588258


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D06_464114


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C11_586170


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C02_298052


title: meyer-00180: 5500024056197041909864.C02


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_F07_723920


title: meyer-00180: 5500024037497121008340.B04


title: meyer-00180: 5500024035100021608462.C06

value: GLIOBLASTOMA


title: meyer-00180: 5500024035100021608462.C12

value: Brain


title: meyer-00180: 5500024035736031208615.E05

value: GBM


title: meyer-00180: 5500024035100021608462.C09


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C04_464084


title: meyer-00180: 5500024032848101507996.D06


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A04_516382


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C04_464084


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C09_787006


title: meyer-00180: 5500024032848101507996.H01


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D09_464020


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D09_464020


title: meyer-00180: 5500024032848101507996.G04


title: meyer-00180: 5500024032848101507996.A05


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_G05_588198


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A07_516460


title: meyer-00180: 5500024035736031208615.H02


title: meyer-00180: 5500024030700072107989.D10


title: meyer-00180: 5500024037497121008340.E05


title: meyer-00180: 5500024035736031208615.A08

value: TEMPORAL LOBE


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B09_586228


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B12_786954


title: meyer-00180: 5500024056197041909864.B01


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D01_516450


title: meyer-00180: 5500014026072032607011.D07

value: MALIGNANT


title: meyer-00180: 5500024035736031208615.B08

value: NOT SPECIFIED


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C01_464082

value: Glioblastoma Multiforme


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C01_464082

value: Untreated primary (De Nova) GBM


title: meyer-00180: 5500024032848101507996.E01


title: meyer-00180: 5500024035100021608462.A05


title: meyer-00180: 5500024032848101507996.E03


title: meyer-00180: 5500024032848101507996.B05


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D09_516446


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A07_586066


title: meyer-00180: 5500024035736031208615.H04


title: meyer-00180: 5500024037497121008340.D09


title: meyer-00180: 5500024032848101507996.H05


title: meyer-00180: 5500024032848101507996.A01


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_C04_400432

value: Male


title: meyer-00180: 5500024024987031607949.D12


title: meyer-00180: 5500024037497121008340.A09


title: meyer-00180: 5500024056197041909864.B02


title: meyer-00180: 5500024035736031208615.E08


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D01_586198


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C12_787008


title: meyer-00180: 5500024056197041909864.H07


title: meyer-00180: 5500024030700072107989.H09


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_B12_464092


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E07_464000

value: Female


title: meyer-00180: 5500024024987031607949.H11


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B07_786976


title: meyer-00180: 5500024035736031208615.B02


title: meyer-00180: 5500024037497121008340.C12


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B04_400398


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E07_464000


title: meyer-00180: 5500024037497121008340.B02


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C09_586174


title: meyer-00180: 5500024037497121008340.D01


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E05_588210


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_B12_464092


title: meyer-00180: 5500024037497121008340.F06


title: meyer-00180: 5500024035736031208615.A03


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C07_787002


title: meyer-00180: 5500024035100021608462.A06


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_E05_724104


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A06_787016


title: meyer-00180: 5500024035100021608462.B11


title: meyer-00180: 5500024032848101507002_Collaborator082307.B02


title: meyer-00180: 5500024035100021608462.A08


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_B02_297952


title: meyer-00180: 5500024035100021608462.A04


title: meyer-00180: 5500024035100021608462.C03


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E08_588212


title: meyer-00180: 5500024024987031607949.C10


title: meyer-00180: 5500024035736031208615.D05


title: meyer-00180: 5500024030700072107989.B08


title: meyer-00180: 5500024035736031208615.A06


title: meyer-00180: 5500024037497121008340.D10


title: meyer-00180: 5500024030700072107989.G09


title: meyer-00180: 5500024024987031607949.G11


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_H09_724066


title: meyer-00180: 5500014026072032607011.H05


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B02_516364


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_E05_691674


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B11_516294


title: meyer-00180: 5500024037497121008340.D07


title: meyer-00180: 5500024035100021608462.C11

value: PARIETAL LOBE


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F03_588260


title: meyer-00180: 5500024032848101507996.G02


title: meyer-00180: 5500024035736031208615.C02

value: FRONTAL LOBE


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B05_786972


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A06_516284


title: meyer-00180: 5500024035100021608462.C05


title: meyer-00180: 5500024037497121008340.F04


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A02_516408


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A12_586054


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C08_586176


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B04_586210


title: meyer-00180: 5500024035100021608462.A02


title: meyer-00180: 5500014026072032607011.F05


title: meyer-00180: 5500024035736031208615.A07


title: meyer-00180: 5500014026072032607011.H07


title: ovarian cancer cell line OV2008 treated with mifepristone rep 1

city: Vermillion

first: Kathleen

middle: M

last: Eyster

state: SD

address: 414 E. Clark St.

department: Basic Biomedical Sciences

institute: University of South Dakota

description: OV2008 cell line was a kind gift from Dr. Stephen Howell, UCSD.

hyb_protocol: 10 micrograms of biotinylated cRNA were mixed with fragmentation buffer and heated to 94C for 20 min.  The fragmented cRNA was mixed with CodeLink hybridization buffer, loaded on the microarray slides, and hybridized for 18 hours at 37C.   (Eyster and Brannian, Meth Molec Biol 2010;590:71-89)

scan_protocol: The slides were scanned in an Axon GenePix 4000B scanner.

data_processing: global median normalization, CodeLink Expression Analysis 5.0

source_name: ovarian cancer cell line OV2008 treated with mifepristone passage 5

label_protocol: Biotinylated cRNA was prepared using the MessageAmp II-Biotin Enhanced Kit from Ambion from 1.0 microgram total RNA starting material.   (Eyster and Brannian, Meth Molec Biol 2010;590:71-89)

extract_protocol: Ovarian cancer cell lines were grown in culture.  TRI reagent was added to the cells for harvesting.  Bromochloropropane and sodium acetate were added to the samples and centrifuged.  The RNA-containing upper layer was removed and the RNA purified on an RNeasy extraction column (Qiagen).  The sample was treated with an on-column DNase treatment (RNase-free DNase, Qiagen).  The purity and quantity of total RNA was evaluated by spectrophotometry and agarose gel electrophoresis.   (Eyster and Brannian, Meth Molec Biol 2010;590:71-89)

tag: species

value: human

tag: gender

value: female

tag: cell type

value: ovarian epithelial

tag: cell line

tag: p53 status

value: wild type

value: 20 micromolar mifepristone

tag: pathology

value: serous cystoadenocarcinoma

tag: passage

tag: comments

value: sensitive to cisplatin

value: mifepristone 1


title: M226-36

city: Aarhus

first: mads

middle: heilskov

last: rasmussen

state: Please Select

address: Brendstrupgårdsvej 21

country: Denmark

institute: Aarhus University Hospital

description: Total RNA were subjected to amplification (Pico Ovation kit , Nugen)

hyb_protocol: Samples were hybridized using Affymetrix standard hybridization kit materials, and chips washed on a Fluidics 450 apparatus

scan_protocol: Affymetrix Gene ChIP 3000 7G Scanner

data_processing:
Data passed QC control metrices in Affymetrix Gene Expression Console. CEL files were loaded into GeneSpring v.12.5 were probes intensities were quantile normalized and summarized using IterPLIER.
probe group file: HuEx-1_0-st-v2.r2.pgf
meta-probeset file:  HuEx-1_0-st-v2.r2.dt1.hg18.full.mps

label_protocol: Total RNA (~10-50 ng) were amplified, fragmented and biotin labelled according to manufacturer's reccomendation (Pico Ovation kit , Nugen)

extract_protocol: Cancer or adjacent normal epithelium cells (as appropriate) were laser-microdissected (Veritas 704) from snap frozen tissue biopsies, and total RNA extracted using the RNeasy micro kit (Qiagen).

treatment_protocol: Metastatic colorectal cancer patients (stage IV) treated first-line with 5FU and oxaliplatin (described in DOI: 10.1016/j.molonc.2013.02.016)

tag: patient no

tag: cancer

value: Colorectal cancer

tag: 1st line treatment

value: oxa

tag: 1st line best response

value: Responder


title: ovarian cancer cell line OV2008/C13 treated with mifepristone rep 1

description: OV2008/C13 cell line was a kind gift from Dr. Stephen Howell, UCSD.

source_name: ovarian cancer cell line OV2008/C13 treated with mifepristone passage 4

tag: treatment

value: resistant to cisplatin


title: M226-32

source_name: Adenocarcinoma


title: M226-34


title: meyer-00180: 5500024032848101507996.G01

tag: diseasestate

value: GLIOBLASTOMA MULTIFORME

tag: organismpart

value: Brain

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

value: GBM

tag: individual

tag: sample

value: MALIGNANT


title: ovarian cancer cell line OV2008 rep 1

source_name: ovarian cancer cell line OV2008 passage 5

tag: species

tag: gender

tag: cell type

tag: cell line

tag: p53 status

tag: pathology

value: control 1


title: ovarian cancer cell line OV2008/C13 rep 1

source_name: ovarian cancer cell line OV2008/C13 passage 4

value: human

tag: passage

tag: comments


title: M226-35

tag: patient no

tag: cancer

tag: 1st line treatment

tag: 1st line best response


title: ovarian cancer cell line OV2008/C13 treated with mifepristone rep 2

source_name: ovarian cancer cell line OV2008/C13 treated with mifepristone passage 8

value: female

tag: treatment

value: mifepristone 2


title: M226-33


title: ovarian cancer cell line OV2008/C13 rep 3

source_name: ovarian cancer cell line OV2008/C13 passage 12

value: ovarian epithelial

value: wild type

value: control 3


title: ovarian cancer cell line OV2008/C13 rep 2

source_name: ovarian cancer cell line OV2008/C13 passage 8

value: serous cystoadenocarcinoma

value: control 2


title: ovarian cancer cell line OV2008 treated with mifepristone rep 3

source_name: ovarian cancer cell line OV2008 treated with mifepristone passage 21

value: 20 micromolar mifepristone

value: sensitive to cisplatin

value: mifepristone 3


title: meyer-00180: 5500024037497121008340.D05

source_name: brain

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: tissue anatomic site

value: OVERLAPPING LESION OF BRAIN

tag: pathologic status

tag: histologic diagnosis


title: ovarian cancer cell line OV2008 treated with mifepristone rep 2

source_name: ovarian cancer cell line OV2008 treated with mifepristone passage 12

tag: species

tag: gender

tag: cell type

tag: cell line

tag: p53 status

tag: pathology

tag: sample


title: ovarian cancer cell line SKOV-3 treated with mifepristone rep 2

description: SK-OV-3 cell line was obtained from American Type Culture Collection.

source_name: ovarian cancer cell line SK-OV-3 treated with mifepristone passage 11

tag: treatment

value: adenocarcinoma

tag: passage

tag: comments

value: moderately resistant to cisplatin


title: M226-30

tag: patient no

tag: cancer

value: Colorectal cancer

tag: 1st line treatment

tag: 1st line best response


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C02_586222

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: tissue anatomic site


title: M226-31

value: oxa

value: Responder


title: ovarian cancer cell line OV2008 rep 2

source_name: ovarian cancer cell line OV2008 passage 12

tag: species

value: human

tag: gender

tag: cell type

tag: cell line

tag: p53 status

tag: pathology

tag: sample


title: ovarian cancer cell line SKOV-3 treated with mifepristone rep 1

source_name: ovarian cancer cell line SK-OV-3 treated with mifepristone passage 5

value: female

tag: treatment

tag: passage

tag: comments

value: Mifepristone 1


title: ovarian cancer cell line SKOV-3 rep 1

source_name: ovarian cancer cell line SK-OV-3 passage 5

value: ovarian epithelial

tag: cell passage

value: control 1


title: ovarian cancer cell line SKOV-3 rep 3

source_name: ovarian cancer cell line SK-OV-3 passage 16


title: ovarian cancer cell line SKOV-3 treated with mifepristone rep 3

source_name: ovarian cancer cell line SK-OV-3 treated with mifepristone passage 16


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D05_516318

tag: diseasestate

value: Glioblastoma Multiforme

tag: organismpart

value: Brain

tag: clinicaldiagnosis

value: Untreated primary (De Nova) GBM

tag: Sex

value: Female

tag: pathologic status

tag: histologic diagnosis


title: M226-29L

tag: patient no

tag: cancer

tag: 1st line treatment

tag: 1st line best response


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B07_400392

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: tissue anatomic site


title: ovarian cancer cell line OV2008 rep 3

source_name: ovarian cancer cell line OV2008 passage 21

tag: species

tag: gender

tag: cell type

tag: cell line

tag: p53 status

value: wild type

tag: treatment

tag: pathology

value: serous cystoadenocarcinoma

tag: passage

tag: comments

value: sensitive to cisplatin

tag: sample

value: control 3


title: ovarian cancer cell line SKOV-3 rep 2

source_name: ovarian cancer cell line SK-OV-3 passage 11

value: adenocarcinoma

value: moderately resistant to cisplatin

value: control 2


title: meyer-00180: 5500024035736031208615.F04

tag: diseasestate

value: GLIOBLASTOMA MULTIFORME

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

value: GBM

value: TEMPORAL LOBE

tag: pathologic status

value: MALIGNANT

tag: histologic diagnosis


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_B09_516356

value: Male

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: tissue anatomic site


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B11_786952


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C11_297994

value: NOT SPECIFIED


title: meyer-00180: 5500024056197041909864.C11


title: meyer-00180: MULEY_p_TCGA_b53and79_Expr_HT_HG-U133A_24-HTA_F09_723902


title: meyer-00180: 5500024032848101507996.C06

value: FRONTAL LOBE


title: ovarian cancer cell line OV2008/C13 treated with mifepristone rep 3

source_name: ovarian cancer cell line OV2008/C13 treated with mifepristone passage 12

tag: species

value: human

tag: gender

value: female

tag: cell type

value: ovarian epithelial

tag: cell line

tag: p53 status

value: 20 micromolar mifepristone

value: resistant to cisplatin

value: mifepristone 3


title: meyer-00180: 5500024035736031208615.E10

value: Brain

tag: sample


title: meyer-00180: 5500024056197041909864.H04

tag: diseasestate


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_H04_298008

tag: organismpart


title: meyer-00180: 5500024024987031607949.E11

tag: clinicaldiagnosis


title: meyer-00180: 5500024035736031208615.A01

tag: Sex


title: meyer-00180: 5500024030700072107989.E09

tag: pathologic status


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A11_516346

value: Glioblastoma Multiforme

value: Untreated primary (De Nova) GBM

tag: histologic diagnosis


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_D09_723994

tag: cancersite


title: M226-25

tag: patient no

tag: cancer

value: Colorectal cancer

tag: 1st line treatment

value: oxa

tag: 1st line best response

value: Non-Responder


title: M226-28

source_name: Adenocarcinoma


title: M226-22L

value: Responder


title: M226-26


title: meyer-00180: 5500024035736031208615.C08

value: GLIOBLASTOMA MULTIFORME

tag: age

tag: clinical diagnosis

value: GBM

tag: individual

tag: tissue anatomic site

value: MALIGNANT


title: M226-24


title: M226-23L


title: M226-21_3


title: M226-18


title: M226-16L


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_C03_586216


title: meyer-00180: 5500024032848101507996.D04

value: FRONTAL LOBE


title: M226-19


title: M226-17L


title: M226-20L


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_D03_297948

value: NOT SPECIFIED


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E06_588208

value: Female


title: meyer-00180: 5500024056197041909864.D03


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_H07_691678


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F01_588256


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E08_464002


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B01_400404


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E08_464002


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B03_786968


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_F07_691636


title: meyer-00180: 5500024032848101507996.G05


title: meyer-00180: 5500024037497121008340.D02

value: OVERLAPPING LESION OF BRAIN


title: meyer-00180: 5500024037497121008340.B03

value: TEMPORAL LOBE


title: meyer-00180: 5500024035736031208615.F07


title: M226-27


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_D07_691684


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F05_588264

value: Male


title: M226-11


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_D07_724062


title: M226-14L


title: M226-13L


title: M226-12


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_D03_786986


title: M226-15


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A08_586070


title: M226-06


title: M226-07


title: M226-10


title: M226-02


title: M226-08L


title: M226-05


title: Rif1Myc ChIP in wt  cells

type: genomic

city: Bethesda

first: Shiv

last: Grewal

address: NCI bldg 37 Rm 6068 9000 Rockville Pike

department: LBMB

description: Rif1 Myc ChIP V3

hyb_protocol: Equal amounts of Cy5-labeled ChIP DNA and Cy3-labeled  whole-cell extract DNA were mixed and combined with human Cot1 DNA, Agilent Blocking Agent and Agilent Hybridization buffer, and hybridized to high-density  microarrays in Agilent SureHyb hybridization chamber for 24 hours at 65˚C, 10 rpm. After hybridization, slides were washed according to Agilent protocol.

scan_protocol: Scanned on an Agilent G2505B scanner.

data_processing: Data were extracted using Agilent Feature Extraction Software (CHIP_1105_Oct12 ). Signal was normalized by combined rank consistency filtering with LOWES intensity normalization.

molecule: genomic DNA

organism: Schizosaccharomyces pombe

source_name: Rif1Myc_log phase_Myc IP DNA

label_protocol: ChIP and whole-cell extract DNA was amplified by random-primed PCR and conjugated with Cy5 (ChIP DNA) or Cy3 (whole-cell extract DNA).

growth_protocol: Standard conditions were used to produce logarithmically growing cultures in rich media (YEA) at 30˚C.

extract_protocol: Fixed cells were lysed with glass-beads; DNA sheared by sonication to 500-1000bp fragments and immunoprecipitated with one of the following antibodies: GFP antibody (Taz1GFP ChIP; Abcam, ab290), antibody raised against recombinant Taz1 (Taz1 and Taz1L593F ChIP; antibody was kindly provided by J.P. Cooper) or with Myc antibody (Rif1-myc ChIP, Santa Cruz Biotechnology, c-Myc A14). Immunoprecipitated DNA was recovered by incubation with protein G or protein A slurry and reversed-crosslinked at 65˚C.

treatment_protocol: Exponentially growing cells were fixed in 3% paraformaldehyde at 30˚C.

tag: genotype/variation

tag: molecule subtype

value: Myc immunoprecipitated DNA

source_name: Rif1Myc_log phase_whole-cell extract DNA

value: Rif1 Myc cells

value: Whole-cell extract DNA


title: M226-03L


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_G07_724112

tag: diseasestate

tag: sample


title: M226-09


title: M226-01


title: M226-04


title: Taz1L593F ChIP

description: Taz1L593F ChIP V3

source_name: taz1l593F (mut5)_log phase_Taz1 IP DNA

value: taz1l593F (mut5)

value: Taz1 immunoprecipitated DNA (antibody raised against Taz1 protein)

source_name: taz1l593F (mut5)_log phase_whole-cell extract DNA


title: Taz1GFP ChIP in wt  cells

description: Taz1GFP ChIP V3

source_name: taz1GFP_log phase_GFP IP DNA

value: GFP immunoprecipitated DNA

source_name: taz1GFP_log phase_whole-cell extract DNA

value: taz1GFP cells


title: meyer-00180: 5500024030700072107989.G03

source_name: brain

tag: organismpart

value: Brain

tag: clinicaldiagnosis

value: BRAIN, NOS


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_G05_724174

tag: Sex

tag: pathologic status


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C02_464080

value: Glioblastoma Multiforme

value: Untreated primary (De Nova) GBM

tag: cancersite

tag: histologic diagnosis


title: meyer-00180: 5500024024987031607949.A10

value: GLIOBLASTOMA MULTIFORME

value: GBM

value: MALIGNANT


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C05_786998


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C02_464080

value: Female


title: meyer-00180: 5500024032848101507996.C02

value: FRONTAL LOBE


title: meyer-00180: 5500024032848101507996.F05


title: Taz1ChIP in wt  cells

description: Taz1 ChIP V3

source_name: wt_log phase_Taz1 IP DNA

value: wt

source_name: wt_log phase_whole-cell extract DNA


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F09_588240

value: Male


title: meyer-00180: 5500024035100021608462.A12


title: meyer-00180: 5500024056197041909864.B10

value: NOT SPECIFIED


title: H3K9me2 ChIP in  delta rif1 cells 3

description: H3K9me2 ChIP ∆rif1 V3 series 3

data_processing:
Data were extracted using Agilent Feature Extraction Software (CHIP_1105_Oct12 ). Signal was normalized by combined rank consistency filtering with LOWES intensity normalization.
Enrichment values were calculated as a ratio of Cy5 processed signal/ Cy3 processed signal.

source_name: ∆rif1_log phase_H3K9me2 IP DNA

extract_protocol: Fixed cells were lysed with glass-beads, DNA sheared by sonication to 500-1000bp fragments and immunoprecipitated with H3K9dime antibody (Abcam,ab1220 or ab115159). Immunoprecipitated DNA was recovered by incubation with protein G or protein A slurry and reversed-crosslinked at 65˚C.

value: delta rif1 cells

value: H3K9me2 immunoprecipitated DNA

source_name: ∆rif1_log phase_whole-cell extract DNA

value: delta rif1

value: Whole-cell extract DNA


title: meyer-00180: 5500024035100021608462.B01

value: TEMPORAL LOBE


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_B10_297936

value: Brain


title: H3K9me2 ChIP in  wild-type 3

description: H3K9me2 ChIP wt  V3 series 3

source_name: wild type_log phase_H3K9me2 IP DNA

value: wild type

source_name: wild type_log phase_whole-cell extract DNA


title: meyer-00180: 5500024037497121008340.B06


title: H3K9me2 ChIP in  wild-type 1

description: H3K9me2 ChIP wt  V3 series 1


title: meyer-00180: 5500024035736031208615.E06


title: meyer-00180: 5500024037497121008340.D08


title: BrdU IP in  cdc25-22 synchronized delta clr4 cells 140 min

description: BrdU IP  ∆clr4 140min V3 series1

hyb_protocol: Equal amounts of Cy5-labeled ChIP DNA and Cy3-labeled whole-cell extract DNA were mixed and combined with human Cot1 DNA, Agilent Blocking Agent and Agilent Hybridization buffer, and hybridized to high-density  microarrays in Agilent SureHyb hybridization chamber for 24 hours at 65˚C, 10 rpm. After hybridization, slides were washed according to Agilent protocol.

source_name: cdc25-22 delta clr4_synchronized_IP DNA

label_protocol: Immunoprecipitated and whole-cell extract DNA was amplified by random-primed PCR and conjugated with Cy5 (IP DNA) or Cy3 (whole-cell extract DNA).

growth_protocol: Cdc25-22 cells carrying thymidine kinase expression module Pnmt1-TK and nucleoside transport module Padh1-hENT were grown in minimal media at 26˚C and arrested at the G2/M block by raising temperature to 37˚C for 4h and 15 min.  Cells were released from block by reducing temperature to 26˚C, and cultures were supplemented at this time by 10mM hydroxyurea and 200μΜ 5-bromo-2'-deoxyuridine.

extract_protocol: The DNA was phenol-extracted from fixed cells by bead-beating with glass beads, sheared by sonication to 500-1000bp fragments and immunoprecipitated with anti-BrdU antibody (BD Pharmigen) immobilized to Dynal anti-mouse magnetic beads (Invitrogen).

treatment_protocol: Cells were collected at time intervals corresponding to maximum septation index and fixed with 0.1% sodium azide.

value: cdc25-22 ∆clr4 cells

value: BrdU immunoprecipitated DNA

value: cdc25-22 delta clr4 cells


title: BrdU IP in cdc25-22 synchronized wt cells 80min

description: BrdU IP wt 80min V3 series2

source_name: cdc25-22_synchronized_IP DNA

value: cdc25-22 cells


title: H3K9me2 ChIP in  wild-type 2

description: H3K9me2 ChIP wt  V3 series 2


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D12_464018

value: Glioblastoma Multiforme

value: Untreated primary (De Nova) GBM


title: H3K9me2 ChIP in  delta taz1 cells 1

description: H3K9me2 ChIP ∆taz1 V3 series 1

source_name: ∆taz1_log phase_H3K9me2 IP DNA

value: delta taz1 cells

source_name: ∆taz1_log phase_whole-cell extract DNA

value: delta taz1


title: meyer-00180: 5500024035736031208615.D02

value: GLIOBLASTOMA MULTIFORME

value: GBM


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D12_464018

value: Male


title: BrdU IP in  cdc25-22 synchronized delta clr4 cells 120 min

description: BrdU IP  ∆clr4 120min V3 series1


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B10_786950


title: Rec12 ChIP in pat1-114  cells

description: Rec12FLAG ChIP V3

source_name: synchronized meiotic cells_Rec2 ChIP

growth_protocol: EMM culture of Pat1-114 haploid cells was starved for nitrogen in minimal media at 25˚C for 18 hours and synchronized meiosis initiated by addition of NH4Cl with simultaneous shift to 36˚C for 4 hours.

extract_protocol: Cells were lysed with glass-beads in 10% trichloroacetic acid (TCA) and Rec12 self-linked to DNA was recovered with TCA precipitated proteins by centrifugation at 17000g. Chromatin was dissolved by boiling in 2%SDS and sheared to 500-1000bp fragments. After SDS dilution to <0.1% Rec12FLAG was immunoprecipitated with anti-FLAG M2 affinity gel (Sigma-Aldrich, A2220) and eluted by incubation with 1% SDS at 65˚C. Immunoprecipitated DNA was recovered after proteinase K (New England BioLabs) treatment.

value: Rec12 FLAG

value: Rec12 immunoprecipitated DNA

source_name: synchronized meiotic cells_whole-cell extract DNA

tag: cell type

value: synchronized meiotic cells


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_F11_588244

value: Female


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_B07_724034


title: BrdU IP in  cdc25-22 synchronized delta taz1 cells 140 min

description: BrdU IP  ∆taz1 140min V3 series1

source_name: cdc25-22 delta taz1_synchronized_IP DNA

value: cdc25-22 ∆taz1 cells

value: cdc25-22 delta taz1 cells

value: Whole-cell extract DNA


title: meyer-00180: 5500024024987031607949.B12

value: Brain

value: FRONTAL LOBE

value: MALIGNANT


title: meyer-00180: 5500024030700072107989.B10


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D08_464118

value: Glioblastoma Multiforme


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_H07_724006


title: BrdU IP in  cdc25-22synchronized  telr delta Is3 cells 80min

description: BrdU IP telr∆Is3 80min V3 series2

source_name: cdc25-22  telrdelta Is3_synchronized_IP DNA

value: cdc25-22  telr∆Is3 cells

value: BrdU immunoprecipitated DNA

source_name: cdc25-22  telr∆Is3_synchronized_whole-cell extract

value: cdc25-22  telr delta Is3 cells


title: meyer-00180: 5500024035736031208615.F08

value: GLIOBLASTOMA MULTIFORME

value: TEMPORAL LOBE


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_E07_724052


title: meyer-00180: 5500024056197041909864.H05

value: GBM

value: NOT SPECIFIED


title: meyer-00180: 5500014026072032607011.C07


title: meyer-00180: 5500024030700072107989.F09


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A11_400408

value: Untreated primary (De Nova) GBM

value: Male


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_F05_691676


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_A09_724056


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_H05_297958


title: meyer-00180: 5500024037497121008340.C08

value: PARIETAL LOBE


title: meyer-00180: 5500024035736031208615.C06


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_D04_786984


title: meyer-00180: 5500024037497121008340.D11

value: OVERLAPPING LESION OF BRAIN


title: meyer-00180: 5500024030700072107989.A09


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C10_787004


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A12_400406


title: BrdU IP in  cdc25-22 synchronized wt cells 140min

description: BrdU IP wt 140min V3 series1

value: cdc25-22 cells


title: meyer-00180: 5500024037497121008340.E10


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A04_298010


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D08_464118


title: BrdU IP in  cdc25-22 synchronized delta taz1 cells 100min

description: BrdU IP  ∆taz1 100min V3 series1

value: cdc25-22 ∆taz1 cells

value: cdc25-22 delta taz1 cells

value: Whole-cell extract DNA


title: BrdU IP in  cdc25-22synchronized wt cells 120min

description: BrdU IP wt 120min V3 series1


title: BrdU IP in cdc25-22 synchronized wt cells 100min

description: BrdU IP wt 100min V3 series1


title: meyer-00180: 5500024056197041909864.A04

value: Brain


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_B02_786966


title: meyer-00180: 5500024035736031208615.C10

value: MALIGNANT


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_H09_691650


title: H3K9me2 ChIP in  delta rif1 cells 2

description: H3K9me2 ChIP ∆rif1 V3 series 2

value: delta rif1 cells

value: H3K9me2 immunoprecipitated DNA

value: delta rif1


title: meyer-00180: 5500024035736031208615.A10

value: GLIOBLASTOMA MULTIFORME


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B06_400394

value: Glioblastoma Multiforme


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E07_588214


title: meyer-00180: 5500024035100021608462.C02

value: GBM


title: BrdU IP in  cdc25-22 synchronized delta clr4 cells 100min

description: BrdU IP  ∆clr4 100min V3 series1

value: cdc25-22 ∆clr4 cells

value: BrdU immunoprecipitated DNA

value: cdc25-22 delta clr4 cells


title: BrdU IP in  cdc25-22 synchronized delta taz1 cells 120 min

description: BrdU IP  ∆taz1 120min V3 series1


title: meyer-00180: 5500024035100021608462.B02

value: PARIETAL LOBE


title: meyer-00180: 5500024032848101507002_Collaborator082307.B08


title: meyer-00180: 5500024035736031208615.H01

value: OVERLAPPING LESION OF BRAIN


title: meyer-00180: 5500024035100021608462.A10


title: meyer-00180: 5500024035100021608462.B10


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_B05_400396

value: Untreated primary (De Nova) GBM

value: Male


title: meyer-00180: WARNS_p_TCGA_b79_Expr_HT_HG-U133A_24-HTA_F09_724094


title: meyer-00180: 5500024035736031208615.A05

value: NOT SPECIFIED


title: meyer-00180: 5500024035736031208615.D06


title: meyer-00180: SOCKS_p_TCGA_31_38_RX14_HT_HG-U133A_96-HTA_E01_588234


title: meyer-00180: 5500024035736031208615.B05


title: meyer-00180: 5500024032848101507996.C03


title: meyer-00180: 5500024035100021608462.B08


title: meyer-00180: 5500024035736031208615.G04


title: meyer-00180: 5500024035736031208615.H07


title: meyer-00180: 5500024035736031208615.F10


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A07_297924


title: meyer-00180: 5500024056197041909864.A07


title: meyer-00180: 5500024037497121008340.C11


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A01_787034


title: meyer-00180: 5500024035100021608462.C07


title: meyer-00180: 5500024032848101507996.A06


title: meyer-00180: 5500024056197041909864.A05


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C08_787000


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_A07_691750


title: meyer-00180: TALAR_p_TCGA_Batch62_Expr_HT_HG-U133A_24-HTA_C07_691784


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_A05_298092


title: meyer-00180: 5500024032848101507996.E04

value: TEMPORAL LOBE


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_C01_786956


title: meyer-00180: 5500024035736031208615.G08

value: Brain


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_A07_400372

value: Female


title: meyer-00180: 5500024035736031208615.F03


title: meyer-00180: 5500024035736031208615.D08


title: meyer-00180: NIDUS_p_TCGA_Batch10_RNA_HT_HG-U133A_96-HTA_C05_400434


title: meyer-00180: 5500024035736031208615.F09

value: MALIGNANT


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C09_464096


title: meyer-00180: 5500024056197041909864.B11


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C09_464096


title: SW620-miR625-rep1

description: replicate 1

data_processing:
Data passed QC control metrices in Affymetrix Gene Expression Console. CEL files were loaded into GeneSpring v.12.5 were probes intensities were quantile normalized and summarized using IterPLIER16.  Probe sets with a mean log2(expr) < 6 in both SW620.miR625-3p and SW620.Scr groups were discarded.
probe group file: HuGene-2_0-st.pgf
meta-probeset file: HuGene-2_0-st.mps

source_name: 50 ng/mL dox, 48 hours

label_protocol: Biotin module

growth_protocol: Cells were cultured in RPMI, 10% FCS, 1% Pen-strep

extract_protocol: QIAzol Lysis Reagent

treatment_protocol: 50 ng/mL doxycycline for 48 hours

tag: cell line

tag: shRNA


title: SW620-miR625-rep2

description: replicate 2


title: SW620-scramble-rep1

description: replicate 1

value: scramble


title: SW620-miR625-rep3

description: replicate 3


title: Serum from subject 6165

first: Alvin

middle: T.

last: Kho

address: 320 Longwood Avenue

department: Informatics Program

institute: Boston Children's Hospital

data_processing:
Raw output values in triplets for each sample: Ct on base 2 exponent, Cq confidence Cq_Conf, amplification score Amp_Score. Triplets with any “Undetermined” value, or Cq-Conf<0.8, or Amp_Score<1.24 are disregarded in subsequent analyses.
In the non_normalized.txt, three values are given for each sample: CT values on base 2 exponent. Cq confidence CQ_CONF. Amplification score AMP_SCORE.  Also the following miRBASE identifiers are included;
#MIRBASE_R21_ID = miRBase release 21 July 03, 2014
http://www.mirbase.org/identifier
#MIRBASE_R21_ACCESSION = miRBase release 21 July 03, 2014
http://www.mirbase.org/accession

The sample data table contains CT_QNORM values;
CT_QNORM = quantitative PCR threshold cycle power exponent base 2 CT from Non-Normalized data matrix that pass quality control threshold of AMP_SCORE >1.24 and CQ_CONF >0.80 (otherwise null valued), and then quantile normalized.

label: FAM

source_name: CAMP_Blood serum

label_protocol: Not applicable.

extract_protocol: Total RNA from 1 mL of serum from the CAMP participants was isolated using the miRNA isolation kit (Norgen Biotek).  We averaged around 4 ng/ul of total RNA in 20 ul measured by RiboGreen. Isolated RNA was reverse-transcribed and the product was pre-amplified using Megaplex PreAmp Primers and TaqMan PreAmp Master Mix (Applied Biosystems).

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

value: White non-Hispanic

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue

value: blood serum


title: Sertoli cells, 0.1mM MBP

city: Shanghai

first: Xiaoqin

last: Yin

state: Shanghai

address: No. 355 Luding Road, Shanghai 200062, P.R.China.

department: Shanghai Children’s Hospital

country: China

institute: School of medicine, Shanghai Jiao Tong University

scan_protocol: Genechips were scanned on the 3000 7G, an Affymetrix GeneChip scanner

organism: Rattus norvegicus

source_name: Rat Sertoli cells

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (

growth_protocol: Sertoli cells were isolated and cultured in DMEM/F12 medium. Testes from rats were aseptically removed, decapsulated, and digested into cell suspension. Isolated cells were placed on a tissue cultured dish in DMEM/F12 supplemented with 10% fetal bovine serum.

treatment_protocol: After primary culture for another 24 hours, Sertoli cells were divided into 4 groups: control, 0.1μM NP, 0.1mM MBP and 0.1μM NP+0.1mM MBP. After 24 hours culture, cells were placed on ice and treated with Trizol Reagent.

value: Tesis


title: meyer-00180: 5500024035736031208615.A04

source_name: brain

tag: diseasestate

value: GLIOBLASTOMA MULTIFORME

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

value: GBM

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 4192 replicate 2

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted


title: Serum from subject 6179

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C12_464102

tag: diseasestate

value: Glioblastoma Multiforme

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Sertoli cells, 0.1μM NP + 0.1mM MBP


title: Serum from subject 8295 replicate 2

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_D03_464124

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site


title: Serum from subject 4192 replicate 1

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 7313

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted


title: Serum from subject 8295 replicate 1

tag: camp subject id

tag: age (yrs)


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_D03_464124

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C12_464102


title: Sertoli cells, 0.1μM NP

tag: tissue


title: Serum from subject 5180

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count


title: Sertoli cells, control


title: Serum from subject 7215

tag: camp subject id

tag: age (yrs)

tag: pre fvc % predicted


title: Serum from subject 2101

tag: gender

tag: tissue


title: SW620-scramble-rep3

description: replicate 3

tag: cell line

tag: shRNA


title: Serum from subject 8207

tag: race

tag: height (cm)

tag: bmi %

tag: bmi


title: meyer-00180: 5500014026072032607011.C05

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 8162

tag: camp subject id

tag: age (yrs)

tag: gender

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 7135

tag: race

tag: height (cm)

tag: bmi %

tag: bmi


title: Serum from subject 4202

tag: camp subject id

tag: age (yrs)


title: Serum from subject 4034

tag: gender

tag: fev1 2 month change


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A12_787020

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: ADX_6 month Replicate 2

city: RTP

first: NIEHS

last: Microarray Core

state: NC

address: 111 T.W. Alexander Drive

department: DIR

institute: NIEHS

description: Gene expression after 6 month adrenalectomy

hyb_protocol: For each sample, 4 ug of Cy3 labeled cDNAs were hybridized for 17 hours in a rotating hybridization oven.

scan_protocol: Slides were washed and then scanned with an Agilent Scanner.

data_processing: Data was obtained using the Agilent Feature Extraction software (v9.5), using the 1-color defaults for all parameters.

organism: Mus musculus

source_name: Heart RNA from 6-month old adrenalectomized (ADX_6mo) mice (replicate 2)

label_protocol: Fifty ng of total RNA was amplified as directed in the NuGEN Ovation Pico WTA System and 5 ug of amplified cDNA was enzymatically labeled using the Agilent SureTag DNA Labeling Kit.

extract_protocol: RNA was isolated from heart using the RNeasy mini kit from Qiagen. RNA quality will be analyzed by gel electrophoresis and quantified using UV-spectrophotometer and nanodrop techniques. RNA quality will be further verified using the BioAnalyzer technique.

treatment_protocol: Mice were adrenalectomized at 1 month of age. Mice were aged for 6 months before gene expression analysis.

tag: strain

tag: tissue

value: Heart


title: meyer-00180: 5500024035736031208615.E02

value: FRONTAL LOBE


title: Serum from subject 6067 replicate 2

tag: camp subject id

tag: age (yrs)

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count


title: meyer-00180: 5500024056197041909864.C03

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: SW620-scramble-rep2

description: replicate 2

tag: cell line

tag: shRNA


title: Serum from subject 6067 replicate 1

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: tissue


title: Serum from subject 8116 replicate 2

tag: bronchodilator response %

tag: burst count


title: meyer-00180: 5500024035736031208615.B04

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: ADX_6 month Replicate 3

source_name: Heart RNA from 6-month old adrenalectomized (ADX_6mo) mice (replicate 3)

tag: strain

tag: gender


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E12_464010


title: Non-ADX_6 month Replicate 3

description: Gene expression after 6 month sham-adrenalectomy

source_name: Heart RNA from 6-month old non-adrenalectomized (Non_ADX_6mo) mice (replicate 3)

tag: tissue


title: meyer-00180: 5500024035736031208615.G09

value: OVERLAPPING LESION OF BRAIN


title: Serum from subject 7253

tag: camp subject id

tag: age (yrs)

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 4004

tag: gender

tag: burst count


title: Serum from subject 8231 replicate 2

tag: camp subject id

tag: tissue


title: Serum from subject 8231 replicate 1

tag: age (yrs)

tag: race


title: Serum from subject 7065

tag: height (cm)

tag: bmi %


title: Serum from subject 4016

tag: bmi

tag: fev1 2 month change


title: Serum from subject 8116 replicate 1

tag: fev1 2 month change % predicted

tag: pc20 change


title: Serum from subject 6181

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: Serum from subject 4061

tag: pre fvc (liter)

tag: pre fvc % predicted


title: Non-ADX_6 month Replicate 2

source_name: Heart RNA from 6-month old non-adrenalectomized (Non_ADX_6mo) mice (replicate 2)

tag: strain


title: meyer-00180: 5500024037497121008340.B11

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E12_464010

value: Untreated primary (De Nova) GBM


title: ADX_6 month Replicate 1

source_name: Heart RNA from 6-month old adrenalectomized (ADX_6mo) mice (replicate 1)

tag: tissue

tag: gender

value: Male


title: Serum from subject 8199

tag: camp subject id

tag: age (yrs)

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count


title: Serum from subject 6078

tag: pre fvc % predicted

tag: tissue


title: Serum from subject 6120

tag: camp subject id

tag: gender


title: Serum from subject 6112

tag: age (yrs)

tag: race


title: Serum from subject 8211

tag: height (cm)

tag: bmi %


title: Serum from subject 4166

tag: bmi

tag: fev1 2 month change


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A09_787026

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 2942

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Non-ADX_6 month Replicate 1

source_name: Heart RNA from 6-month old non-adrenalectomized (Non_ADX_6mo) mice (replicate 1)

tag: strain


title: embryo at E14, Transient Cartilage  [E14-C]

city: Kanpur

first: Amitabha

last: Bandyopadhyay

state: Uttar Pradesh

address: IIT Kanpur

department: BSBE

country: India

institute: Indian Institute of Technology Kanpur

description: Gene expression data from transient cartilage of HH40 (E14) Tibia

data_processing: Done by micro-array core facility of Dana-Farber Cancer Institute (DFCI); details not provided

organism: Gallus gallus

source_name: Transient Cartilage Tibia, isolated, HH40 (E14)

label_protocol: 5 microgram of total RNA for each sample was submitted to micro-array core facility of Dana-Farber Cancer Institute (DFCI), Smith Building, Room 1129 (sample drop-off), Boston, MA 02115

growth_protocol: Fertilized white leghorn Chicken (Gallus gallus) eggs were incubated at 38˚C in a humified incubator to be harvested at HH stage 38 (E12) and HH40 (E14).

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions. The RNA solution was cleaned-up using Qiagen micro KIT

treatment_protocol: Transient + articular cartilage (TC+AC) and pure transient cartilage (TC) were dissected out of both HH38 (E12) and HH40 (E14) chicken tibia rinsed with PBS and placed on ice in the Trizol solution.

value: Fertilized white leghorn Chicken egg

tag: developmental stage

value: tibia, epiphysis, purely transient cartilage


title: embryo at E12, Articular + Transient Cartilage  [E12-AC]

description: Gene expression data from transient cartilage + articular cartilage of HH38 (E12) Tibia

hyb_protocol: Done by micro-array core facility of Dana-Farber Cancer Institute (DFCI)

source_name: Transient Cartilage + Articular cartilage Tibia, isolated, HH38 (E12)

value: tibia, articular cartilage with some transient cartilage


title: embryo at E14, Articular + Transient Cartilage  [E14-AC]

description: Gene expression data from transient + articular cartilage of HH40 (E14) Tibia

scan_protocol: Done by micro-array core facility of Dana-Farber Cancer Institute (DFCI)

source_name: Transient Cartilage + Articular cartilage Tibia, isolated, HH40 (E14)

value: tibia, articular cartilage with some  transient cartilage,


title: meyer-00180: 5500024032848101507996.C01

tag: diseasestate

tag: organismpart

value: Brain

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

value: Blood

tag: pathologic status

value: NON-MALIGNANT

tag: histologic diagnosis

value: NO HISTOLOGY AVAILABLE


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_A11_586050


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_C07_464108

value: Female


title: Serum from subject 7128

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

value: White non-Hispanic

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

value: blood serum


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_C07_464108

tag: diseasestate

value: Glioblastoma Multiforme

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 7059

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: burst count

tag: tissue


title: Serum from subject 2962

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %


title: Serum from subject 1314

tag: camp subject id

tag: age (yrs)


title: Serum from subject 7139

tag: gender

tag: race


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_A08_516468

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: 5500024035100021608462.B12

value: GLIOBLASTOMA MULTIFORME

value: GBM

value: MALIGNANT


title: Serum from subject 5175

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: meyer-00180: 5500024056197041909864.C07

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

value: NOT SPECIFIED

tag: individual

tag: sample

tag: tissue anatomic site


title: Serum from subject 8252

tag: camp subject id

tag: age (yrs)

tag: gender

value: Male

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: meyer-00180: FEAST_p_TCGA_B20_21_Expression_HT_HG-U133A_96-HTA_D10_516384

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

value: Untreated primary (De Nova) GBM

tag: Sex

tag: cancersite

tag: age

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_D08_586184

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site


title: embryo at E12, Transient Cartilage [E12-C]

description: Gene expression data from transient cartilage of HH38 (E12) Tibia

source_name: Transient Cartilage Tibia, isolated, HH38 (E12)

tag: strain

value: Fertilized white leghorn Chicken egg

tag: developmental stage

tag: tissue

value: tibia, epiphysis, purely transient cartilage,


title: meyer-00180: 5500024032848101507996.B04

value: TEMPORAL LOBE


title: Serum from subject 4230

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count


title: Serum from subject 8111

tag: pre fev1 % predicted

tag: tissue


title: Serum from subject 2034

tag: camp subject id

tag: age (yrs)


title: Serum from subject 6093

tag: gender

tag: race


title: Serum from subject 3092

tag: height (cm)

tag: bmi %


title: Serum from subject 6118

tag: bmi

tag: fev1 2 month change


title: meyer-00180: BONES_p_TCGA_Batch8_9_RNA_HT_HG-U133A_96-HTA_C07_298036

tag: diseasestate

tag: organismpart

value: Brain

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 7147

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 8137

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change


title: Serum from subject 7239

tag: camp subject id

tag: age (yrs)


title: Serum from subject 6183

tag: gender

tag: race


title: Serum from subject 7235

tag: fev1 2 month change % predicted

tag: pc20 change


title: meyer-00180: APEEK_p_TCGA_GBM16_Ov15_Expr_HT_HG-U133A_96-HTA_E11_464008

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 2112

tag: camp subject id

tag: age (yrs)

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 6190

tag: gender

tag: race

tag: fev1 2 month change % predicted

tag: pc20 change


title: meyer-00180: APEEK_p_TCGA_GBM16-Ov15_Expr_HT_HG-U133A_96-HTA_E11_464008

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: 5500024030700072107989.F08

value: FRONTAL LOBE


title: Serum from subject 7338

tag: camp subject id

tag: age (yrs)

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 6066

tag: gender

tag: race

tag: fev1 2 month change % predicted

tag: pc20 change


title: Serum from subject 4274

tag: camp subject id

tag: age (yrs)


title: Serum from subject 1326

tag: height (cm)

tag: bmi %


title: Serum from subject 1172

tag: bmi

tag: fev1 2 month change


title: meyer-00180: 5500024024987031607949.G10

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis


title: Serum from subject 2131

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: meyer-00180: 5500024037497121008340.F08

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site


title: Serum from subject 8134

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: meyer-00180: URGED_p_TCGA_Pop_May2011_HT_HG-U133A_96-HTA_A08_787012

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: pathologic status

tag: histologic diagnosis


title: meyer-00180: 5500024037497121008340.E04

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

value: OVERLAPPING LESION OF BRAIN


title: Serum from subject 4221

tag: camp subject id

tag: age (yrs)

tag: gender

tag: race

tag: height (cm)

tag: bmi %

tag: bmi

tag: fev1 2 month change

tag: pre fvc (liter)

tag: pre fvc % predicted

tag: pre fev1/fvc

tag: bronchodilator response %

tag: burst count

tag: tissue


title: Serum from subject 8212

tag: fev1 2 month change % predicted

tag: pc20 change

tag: pre fev1 (liter)

tag: pre fev1 % predicted


title: meyer-00180: TARRE_p_MultiPlate_TCGA_SS_MA_Ref_HT_HG-U133A_96-HTA_B11_586224

tag: diseasestate

tag: organismpart

tag: clinicaldiagnosis

tag: Sex

tag: cancersite

tag: age

tag: clinical diagnosis

tag: individual

tag: sample

tag: tissue anatomic site

tag: pathologic status

tag: histologic diagnosis