title: Lung_tissue_TL_ rep2

city: Yangling

first: Cunling

last: Jia

state: Shaanxi

address: Xinong road 22#

department: Animal science

institute: Northwest A&F University

description: Gene expression of lung tissue in Tibetan pig at lowland

hyb_protocol: 875ng of Cy3-labelled cRNA was fragmented at 60°C for 30 minutes in a reaction volume of 55μl containing 25x Agilent fragmentation buffer and 10x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 55μl of 2x GEx Agilent hybridization buffer was added to the fragmentation mixture and hybridized to Agilent Whole Porcine Genome Oligo (4 X 44K) Microarrays  for 17 hours at 65°C in a rotating Agilent hybridization oven (10rpm).  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent), then dried immediately by brief centrifugation.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505B) .

data_processing: The scanned images were analyzed with Feature Extraction Software 9.1 (Agilent) using default parameters (protocol GE1-v1_91 and Grid: 012391_D_20060331) to obtain background subtracted and spatially detrended Processed Signal intensities.  Features flagged in Feature Extraction as Feature Non-uniform outliers were excluded.

organism: Sus scrofa

source_name: Lung tissue, Tibetan pig, lowland, replicate 2

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 2 ug RNA using the One-Color Low RNA Input Linear Amplification kit (Agilent) according to the manufacturer's instructions, followed by RNeasy® mini kit (QIAGEN, Valencia, CA).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

extract_protocol: Total RNA was extracted from lung tissue using the Trizol RNA isolation (Invitrogen, USA). RNA was purified and DNase treated with QIAGEN RNeasy Mini kit (QIAGEN, Valencia, CA) according to the manufacturer’s instructions. The integrity and quality of the extracted RNA was evaluated by the Agilent 2100 bioanalyzer (Agilent Technologies, Inc., Santa Clara, CA, USA).

treatment_protocol: Tibetan pigs were raised at Tibetan Autonomous Prefecture of Diqing (3,500 m) (TH), and Duroc pigs were raised at lowland (Guangzhou, 40 m) (DL). Tibetan pigs from TH population and Duroc pigs from DL population were migrated to lowland (TL) or highland (DH) on 1 month old and raised until 6 month old  , respectively. Lung samples of  four groups were obtained, then were snap frozen in liquid nitrogen and stored at -80℃ until RNA extraction.

value: lung

tag: age

tag: breed

value: Tibetan

tag: location

value: lowland


title: AdiposeTissue_after_PLA_subject_10

status: Public on Jul 15 2016

type: RNA

city: Wageningen

first: Guido

last: Hooiveld

address: HELIX, Stippeneng 4

department: Div. Human Nutrition & Health

country: Netherlands

institute: Wageningen University

hyb_protocol: Samples were hybridized to Affymetrix GeneChip Human Gene 1.1 ST array plates (Santa Clara, CA) according to manufacturer's instructions.

scan_protocol: Arrays were scanned on an Affymetrix GeneTitan instrument (Affymetrix, Santa Clara, CA).

data_processing: Expression estimates were calculated applying the RMA algorithm in the Bioconductor library 'Oligo' (v1.34.0).

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: Subcutaneous adipose tissue biopsy, after 1 wk of intervention with placebo, subject 10

label_protocol: One hundred nanogram of total RNA was used for whole transcript cDNA synthesis with the Whole-Transcript Sense Target Assay (Affymetrix, Santa Clara, CA, USA; P/N 900652).

growth_protocol: Fifty-seven low active (<3h organized sports activities per week), weight-stable (<2 kg body weight change 3 months prior to inclusion), overweight/obese (BMI 25-35 kg/m2) Caucasian men aged between 35 and 70 years with impaired glucose metabolism (either fasting glucose > 6.1 mmol/l, and/or 2h glucose between 7.8-11 mmol/l) were included in this study. For a period of 3 months before entering the study, subjects did not use antibiotics. Exclusion criteria were known allergic reactions to vancomycin, teicoplanine, amoxicillin or related antibiotics, hearing disorders, cancer, liver malfunction, major illnesses with a life expectancy < 5 years and pulmonary, hepatic, cardiovascular, kidney, and gastrointestinal disease. Participants did not use beta-blockers, lipid and glucose lowering-drugs, antioxidants or chronic corticosteroids. All subjects gave written informed consent for participation in this study, which was reviewed and approved by the local Medical Ethical Committee of Maastricht University Medical Centre+. All procedures were executed according to the declaration of Helsinki.

extract_protocol: Total RNA was prepared from the abdominal subcutaneous adipose biopsies (~500mg) using TRIzol reagent, whereafter purified total RNA was isolated using Qiagen RNeasy columns. RNA integrity was checked on chip analysis (Agilent 2100 Bioanalyzer, Agilent Technologies, Amsterdam, The Netherlands) according to the manufacturer's instructions. RNA was judged as suitable for array hybridization only if samples exhibited intact bands corresponding to the 18S and 28S ribosomal RNA subunits, and displayed no chromosomal peaks or RNA degradation products (RNA Integrity Number > 7.0).

treatment_protocol: In this double-blind, randomized controlled, parallel intervention trial, participants received 500 mg/day amoxicillin, vancomycin or placebo for 7 days. All medication (amoxicillin, vancomycin and placebo (microcrystalline cellulose)) was encapsulated equally to blind the content to subjects and investigators (Basic Pharma, Geleen, The Netherlands). After completion of the study, returned capsules were counted for compliance. The randomization was established by the ALEA Randomization Service (www.tenalea.net). Randomization with stratification for BMI, age and 2h-glucose values was used to increase the homogeneity of the three treatment groups. The treatment period started at the day after the last baseline measurement of week 1. All measurements were performed before the antibiotics (week 1) and in the week after the antibiotics (week 3), with a wash out period of 2 days after intervention before performing the measurements. 8 weeks after cessation of the intervention (week 10), a follow-up measurement was planned. In total, subjects were asked to visit the university 7 times (screening, 2x3 clinical investigation days, and one follow-up meeting). Subjects were instructed to maintain their habitual lifestyle pattern throughout the study. In week 1, 3 and 10, subjects were asked to fill in a 3 day food intake record in order to monitor changes in dietary energy and macronutrient intake. Two days prior to the clinical investigation days (CID), participants refrained from intense exercise and alcohol. The evening before an investigation day, a low-fiber and low-fat meal was consumed. After an overnight fast, participants came to the university by car or public transport. All procedures were executed in a resting, half-supine position. At the first investigation day, an abdominal subcutaneous adipose tissue biopsies were taken under local anesthesia under fasted conditions.

tag: tissue

value: subcutaneous adipose

tag: gender

value: male

tag: age (yrs)

tag: population

value: Caucasian

tag: phenotype

value: overweight/obese

tag: disease state

value: prediabetic

tag: treatment

value: placebo

tag: time point

value: after 1 wk of intervention


title: AdiposeTissue_after_PLA_subject_3

source_name: Subcutaneous adipose tissue biopsy, after 1 wk of intervention with placebo, subject 3


title: AdiposeTissue_before_intervention_ subject_3

source_name: Subcutaneous adipose tissue biopsy, before intervention (baseline measurement), subject 3

value: before intervention


title: AdiposeTissue_after_PLA_subject_4

source_name: Subcutaneous adipose tissue biopsy, after 1 wk of intervention with placebo, subject 4


title: AdiposeTissue_before_intervention_ subject_4

source_name: Subcutaneous adipose tissue biopsy, before intervention (baseline measurement), subject 4


title: Lung_tissue_TL_ rep1

country: China

source_name: Lung tissue, Tibetan pig, lowland, replicate 1


title: AdiposeTissue_before_intervention_ subject_6

source_name: Subcutaneous adipose tissue biopsy, before intervention (baseline measurement), subject 6


title: AdiposeTissue_before_intervention_ subject_11

source_name: Subcutaneous adipose tissue biopsy, before intervention (baseline measurement), subject 11


title: AdiposeTissue_before_intervention_ subject_15

source_name: Subcutaneous adipose tissue biopsy, before intervention (baseline measurement), subject 15


title: Lung_tissue_DH_ rep2

description: Gene expression of lung tissue in Duroc pig at  highland

source_name: Lung tissue, Duroc pig,highland, replicate 2

value: Duroc

value: highland


title: Lung_tissue_TH_ rep2

description: Gene expression of lung tissue in Tibetan pig at highland

source_name: Lung tissue, Tibetan pig, highland, replicate 2


title: Lung_tissue_DH_ rep1

source_name: Lung tissue, Duroc pig,highland, replicate 1


title: Lung_tissue_TH_ rep1

source_name: Lung tissue, Tibetan pig, highland, replicate 1


title: Lung_tissue_DL_ rep1

description: Gene expression of lung tissue in Duroc pig at lowland

source_name: Lung tissue, Duroc pig, lowland, replicate 1


title: 1_73187_ 0wk

city: Atlanta

first: Gregory

middle: K

last: Tharp

state: GA

address: 954 Gatewood Dr

department: Developmental and Cognitive Neuroscience

country: USA

institute: Yerkes National Primate Research Center

hyb_protocol: Arrays were washed, stained and scanned as described in the Affymetrix GeneChip® Expression Analysis Technical Manual

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G.

data_processing: Background adjustment, normalization and median polish summarization of .CEL files was performed with the robust multi-chip average (RMA) algorithm using the affy Bioconductor package.

label_protocol: Twenty µg of the amplified RNA was fragmented, biotinylated, and hybridized to arrays using the Genechip 3'IVT Express Kit, according to kit instructions.

extract_protocol: Total RNA extraction was performed using the Paxgene RNA kit (QIAGEN, Hilden, Germany)

treatment_protocol: Study participants received chloroquine 250mg orally or placebo for 12 weeks.

value: blood

tag: subjectid

value: Placebo

tag: timepoint


title: 4_102388_12wk

value: Chloroquine


title: 3_102388_0wk


title: 8_258498_12wk


title: Lung_tissue_DL_ rep2

source_name: Lung tissue, Duroc pig, lowland, replicate 2


title: 6_253626_12wk


title: 2_73187_12wk


title: 9_581152_0wk


title: 10_581152_12wk


title: 7_258498_0wk


title: 13_610992_0wk


title: 16_611285_12wk


title: 5_253626_0wk


title: 12_581162_12wk


title: 11_581162_0wk


title: 17_621942_0wk


title: 18_621942_12wk


title: 15_611285_0wk


title: 21_21959_0wk


title: 25_102400_0wk


title: 24_102392_12wk


title: 23_102392_0wk


title: 27_251809_0wk


title: 14_610992_12wk


title: 19_21826_0wk


title: 26_102400_12wk


title: 29_363185_0wk


title: 28_251809_12wk


title: 20_21826_12wk


title: 30_363185_12wk


title: 22_21959_12wk


title: 34_108024_12wk


title: 32_621783_12wk


title: 35_102365_0wk


title: 31_621783_0wk


title: 36_102365_12wk


title: 37_321578_0wk


title: 39_620895_0wk


title: 40_620895_12wk


title: 38_321578_12wk


title: 43_251662_Week0


title: 42_21990_Week12


title: 35_621083_Week0


title: 41_21990_Week0


title: 23_253597_Week0


title: 38_621807_Week12


title: 44_251662_Week12


title: 1_21698_Week0


title: 8_251535_Week12


title: 37_621807_Week0


title: 24_253597_Week12


title: 29_363055_Week0


title: 33_108024_0wk


title: 2_21698_Week12


title: 11_253577_Week0


title: 36_621083_Week12


title: 25_253598_Week0


title: 12_253577_Week12


title: 7_251535_Week0


title: 39_781429_Week0

value: Chloroq


title: 19_781388_Week0


title: 22_214285_Week12


title: 40_781429_Week12


title: 21_214285_Week0


title: 28_258566_Week12


title: 16_580178_Week12


title: 26_253598_Week12


title: 30_363055_Week12


title: 20_781388_Week12


title: 34_611243_Week12


title: 27_258566_Week0


title: 15_580178_Week0


title: 18_621772_Week12


title: 33_611243_Week0


title: 13_363057_Week0


title: 14_363057_Week12


title: 9_251555_Week0


title: 32_363061_Week12


title: 130729_46LMD0_7296_MCL

city: Bethesda

first: Delong

last: Liu

state: MD

address: 10 Center Drive

institute: NHLBI/NIH

description: Gene expression from tumor cells in lymph node mix

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: Affymetrix Expression Console was used to extract log2 RMA signal intensities of the probesets from cel files.

source_name: Mantle cell lymphoma

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, Affymetrix).

growth_protocol: Mononuclear cells from PB and LN single-cell suspension were isolated by density gradient centrifugation using the lymphocyte separation medium (ICN Biomedicals). Fresh cells were subject to CD19 selection by magnetic beads labeling using the MACS columns (Miltenyi Biotec). CD19 samples with purity of >96% were stored at -80°C for subsequent use.

extract_protocol: Extraction of total RNA was performed according to the manufacturer's instructions.

value: unpurified lymph node biopsy

tag: cell type

value: mixture of B, T and other cells


title: 10_251555_Week12


title: 31_363061_Week0


title: 130729_48LMD0_7129_MCL


title: 17_621772_Week0


title: 130729_49LMD0_7130_MCL


title: 130729_42LMD0_7109_MCL


title: 130729_40LMD0_5742_MCL


title: 130729_44LMD0_7124_MCL


title: 130729_39LMD0_5740_MCL


title: 130729_47LMD0_7128_MCL


title: 130729_24LMD0_4922_MCL


title: High3, biological rep3

city: Beijing

first: Yuan

last: LUO

state: Beijing

address: No. 30 Fucheng Road, Haidian District

institute: Air Force General Hospital, PLA, P. R. China

description: miRNAs expression data from HepG2 cells treated with 600μM H2O2 for 24 hours

hyb_protocol: Labeled miRNA was hybridized to the array for 16 hours at 48 “C and 60 rpm as described in the protocol.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000 7G

data_processing: The data were analyzed with Robust Multi-chip Average (RMA) algorithm as normalization method.

source_name: High concentration group, 600μM

label_protocol: Per RNA sample, 1 ug were used as input into the procedure as recommended by protocol (Genisphere FlashTagTM Biotin RNA Labeling for Affymetrix GeneChip miRNA arrays).

growth_protocol: HepG2 cells were maintained as a monolayer culture in DMEM supplemented with 10% fetal bovine serum, 100 IU/ml penicillin and 100 μg/ml streptomycin. HepG2 cells were cultured in a humidified incubator with 5% CO2 at 37°C.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: HepG2 cells were seeded in 10 cm dishes and cultured as usual until they reached 80% confluence. The cells were treated with H2O2 (0, 30 and 600 μM) for 24 h and each concentration was repeated in 3 dishes.

tag: cell line

value: human hepatocellular carcinoma


title: 110608_36LMD0_5736_MCL


title: 110608_38LMD0_5738_MCL


title: 090727_32LMD0_5077_MCL


title: 090727_31LMD0_4935_MCL


title: 130729_28LMD0_4940_MCL


title: High2, biological rep2


title: 110608_35LMD0_5734_MCL


title: High1, biological rep1


title: 090727_27LMD0_4934_MCL


title: 090727_15LMD0_4938_MCL


title: 090727_21LMD0_4937_MCL


title: 090727_08LMD0_4926_MCL


title: 110608_09LMD0_5075_MCL


title: 110608_03LMD0_4939_MCL


title: 130729_25LMD0_4928_MCL


title: 090727_04LMD0_4927_MCL


title: 090727_17LMD0_5073_MCL


title: 110608_34LMD0_5732_MCL


title: Low3, biological rep3

description: miRNAs expression data from HepG2 cells treated with 30μM H2O2 for 24 hours

source_name: Low concentration group, 30μM


title: 090727_20LMD0_4920_MCL


title: Low2, biological rep2


title: Low1, biological rep1


title: 090727_10LMD0_4924_MCL


title: 090727_11LMD0_4917_MCL


title: 090727_19LMD0_4918_MCL


title: 090727_22LMD0_4914_MCL


title: Con3, biological rep3

description: miRNAs expression data from HepG2 cells without H2O2 treatment

source_name: Control group, without H2O2


title: 090727_23LMD0_4912_MCL


title: 090727_16LMD0_4910_MCL


title: Con2, biological rep2


title: Con1, biological rep1


title: 090727_07LMD0_2979_MCL


title: 090727_14LMD0_4182_MCL


title: B-catenin_Hs ChIP-seq

type: SRA

city: Utrecht

first: Jurian

last: Schuijers

state: Utrecht

address: Uppsalalaan 8

institute: Hubrecht Insitute

library_source: genomic

data_processing:
Sequencing reads were mapped against the reference genome (mm9) using BWA package
Sequencing reads were mapped against the reference genome (hg19) using BWA package
Multiple reads mapping to same location and strand have been collapsed to single read and only uniquely placed reads were used for peak calling.
Genome_build: mm9, hg19
Supplementary_files_format_and_content: [.wig] file reports peaks

molecule: genomic DNA

source_name: L8 colorectal cells

growth_protocol: Cells were cultured in DMEM supplemented with 10% FBS and Pen/Strep

extract_protocol:
human cells or mouse intestinal crypts were crosslinked with 1% formaldehyde for 20 min at room temperature. For β-catenin ChIP-seq, cells were crosslinked for 40 min using ethylene glycol-bis(succinimidylsuccinate) (Thermo Scientific) at 12.5 mM final concentration, with the addition of formaldehyde (1% final concentration) after 20 min of incubation. The reaction was quenched with glycine, and the cells were successively washed with PBS, buffer B (0.25% Triton X-100, 10 mM EDTA, 0.5 mM EGTA, 20 mM HEPES, pH 7.6), and buffer C (0.15 M NaCl, 1 mM EDTA, 0.5 mM EGTA, 20 mM HEPES, pH 7.6). The cells were then resuspended in shearing buffer (0.3% SDS, 1% Triton X-100, 0.15 M NaCl, 1 mM EDTA, 0.5 mM EGTA, 20 mM HEPES, pH 7.6) and sheared using Covaris S2 (Covaris) for 8 min with the following settings: duty cycle, max; intensity, max; cycles per burst, max; mode, power tracking.
Immunoprecipitated chromatin was sheared, end-repaired, sequencing adaptors were ligated and the library was amplified by ligation mediated PCR (LMPCR). After LMPCR, the library was purified and checked for the proper size range and for the absence of adaptor dimers on a 2% agarose gel, barcoded and sequenced on SOLiD/AB sequencer in multiplexed way to produce 50 base pair long reads.

value: colorectal cancer cell line L8

tag: chip antibody

value: rabbit-anti-β-catenin (H102; Santa Cruz, catalog# sc-7199)


title: ASCL2_Hs ChIP-seq

value: mouse-anti-Ascl2 (7E2; Millipore, catalog# MAB4418)


title: 130729_39PBD0_5435_MCL

description: Gene expression from tumor cells in peripheral blood

value: peripheral blood


title: 110707_06PBD0_2932_MCL


title: 130729_46LMD0_6747_MCL_SCS

description: Gene expression from tumor cells in lymph node

value: purified lymph node


title: 130729_24PBD0_4530_MCL


title: 130729_37PBD0_5250_MCL


title: 090727_33PBD0_5123_MCL


title: 130729_28LMD0_4756_MCL_SCS


title: 130729_42LMD0_5838_MCL_SCS


title: 110707_01PBD0_2797_MCL


title: 130729_21PBD0_4458_MCL


title: 130729_29PBD0_4772_MCL


title: 130729_21LMD0_4453_MCL_SCS


title: BALBLpsd BHT biological rep 3

status: Public on Jul 14 2016

city: Aurora

first: Alison

middle: Kendall

last: Bauer

state: CO

address: 12850 E. Montview Blvd.; Rm 3125

department: Environmental and Occupational Health

institute: University of Colorado Denver

hyb_protocol: 3.5ug of fragmented and biotinylated ss-cDNA was hybridizised to the Affymetrix Mouse Gene 2.0 ST arrays in the GeneChip Hybridization Oven 640 with rotation at 60 rpm for 16 hours at 45°C.

scan_protocol: GeneChips were scanned in an Affymetrix GCS3000 scanner with autoloader.

data_processing: Partek Genomics Suite 6.6 software was used to normalize the data. The CEL files were all RMA normalized.

organism: Mus musculus

source_name: Bronchoalveolar lavage

label_protocol: 150 ng total RNA was processed according to the UserGuide GeneChip® WT PLUS Reagent Kit Rev3 protocol.  Biotinylated cRNA was prepared using the Affymetrix TdT and biotinylated labeling reagents.

extract_protocol: Total RNA was extracted from individual mouse BALF macrophages using  Macherey-Nagel NucleoSpin RNA II kit . Total RNA was quality tested using an Agilent Tapestation Bioanalyzer (Agilent) and only those samples passing with a RIN of 7 or higher were used.

treatment_protocol: Animals were exposed to oil or BHT (1 dose of BHT every week for 4 weeks) then sacrificed 3 days following the last BHT injection.

value: Macrophages

value: Male

tag: strain

value: BALBLpsd


title: 110707_50PBD0_3011_MCL


title: 130729_46PBD0_6744_MCL


title: 080409_12PBD0_4040_MCL


title: 090727_52PBD0_2721_MCL


title: BALBLpsd oil biological rep 1


title: 080409_23PBD0_4523_MCL


title: 130729_28PBD0_4758_MCL


title: BALBLpsd BHT biological rep 2


title: BALBLpsd oil biological rep 2


title: 130729_25PBD0_4579_MCL


title: 080409_09PBD0_3073_MCL


title: 090727_51PBD0_3064_MCL


title: BALB BHT biological rep 3

value: BALB/cJ


title: BALB BHT biological rep 1


title: BALBLpsd BHT biological rep 1


title: BALB BHT biological rep 2


title: BALB BHT biological rep 4


title: BALB oil biological rep 4


title: BALB oil biological rep 3


title: BALB oil biological rep 2


title: BALB oil biological rep 1


title: OFF_R

city: Basel

first: Till

middle: Steffen

last: Voss

address: Socinstrasse 59

department: Medical Parasitology and Infection Biology

country: Switzerland

institute: Swiss Tropical and Public Health Institute

hyb_protocol: Microarray hybridizations were carried out as described in (Painter HJ, Altenhofen LM, Kafsack BF, Llinás M: Whole-genome analysis of Plasmodium spp. Utilizing a new agilent technologies DNA microarray platform. Methods Mol Biol. 2013;923:213-9). In short, 250ng Cy5-labeled test cDNA and 250ng Cy3-labeled reference pool cDNA were hybridized on a P. falciparum 8x15K Agilent gene expression microarray for 16 hours at 65°C in an Agilent hybridisation oven (G2545A).

scan_protocol: Microarrays were scanned as described in [Bozdech Z, Llinas M, Pulliam BL, Wong ED, Zhu J, DeRisi JL: The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol 2003, 1(1):E5]. In short, scanning was performed with an Axon GenePix 4000B microarray scanner and associated GenePix Pro v6.0 software (Axon Instruments, Union City, California, USA).

data_processing: The raw microarray data representing relative transcript abundance ratios between each test sample and the reference pool (Cy5/Cy3 log2 ratios) were subjected to lowess normalization and background filtering as implemented by the Acuity 4.0 program (Molecular Devices). Flagged features and features with either Cy3 or Cy5 intensities lower than two-fold the background were discarded.

organism: Plasmodium falciparum 3D7

source_name: RNA extracted from 3D7/TRFGFP-OFF parasites at 16-24hpi

label_protocol: Labeling was carried out as described in [Bozdech Z, Llinas M, Pulliam BL, Wong ED, Zhu J, DeRisi JL: The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum. PLoS Biol 2003, 1(1):E5]

growth_protocol: 3D7/TRPGFP-ON parasites were synchronized twice 16 hrs apart to obtain an eight hour growth window. At 4-12 hpi the culture was split into two populations, where one third of the culture was maintained in presence of Shield-1 (3D7/TRPGFP-ON) and two thirds were cultured in absence of Shield-1 (3D7/TRPGFP-OFF). At 16-24 hpi both populations were synchronized again. After re-invasion total RNA was isolated from late ring stages (R; 16-24 hpi), trophozoites (T; 24-32 hpi) ), early schizonts (ES; 32-40 hpi) and late schizonts (LS; 40-48 hpi). For 3D7/TRPGFP-OFF parasites a fifth TP was harvested four hrs later (LS2; 44-52 hpi) due to their delay in progression through schizogony

extract_protocol: Total RNA was extracted using Ribozol (Amresco) following manufacturer's instructions.

value: conditional mutant 3D7/TRF-GFP-DD

value: 16-24 hours post-invasion (hpi)

value: whole organism

source_name: reference pool RNA

value: wild type strain 3D7

tag: time

value: 8-48 hours post-invasion (hpi)


title: ON_T

source_name: RNA extracted from 3D7/TRFGFP-ON parasites at 24-32hpi

value: 24-32 hours post-invasion (hpi)


title: OFF_T

source_name: RNA extracted from 3D7/TRFGFP-OFF parasites at 24-32hpi


title: ON_LS

source_name: RNA extracted from 3D7/TRFGFP-ON parasites at 40-48hpi

value: 40-48 hours post-invasion (hpi)


title: OFF_LS2

source_name: RNA extracted from 3D7/TRFGFP-OFF parasites at 44-52hpi

value: 44-52 hours post-invasion (hpi)


title: OFF_ES

source_name: RNA extracted from 3D7/TRFGFP-OFF parasites at 32-40hpi

value: 32-40 hours post-invasion (hpi)


title: OFF_LS

source_name: RNA extracted from 3D7/TRFGFP-OFF parasites at 40-48hpi


title: ON_R

source_name: RNA extracted from 3D7/TRFGFP-ON parasites at 16-24hpi


title: ON_ES

source_name: RNA extracted from 3D7/TRFGFP-ON parasites at 32-40hpi


title: Control_Granulosa_bio_rep_13

city: Ankara

first: Bala

last: Gur Dedeoglu

address: Ankara University Tandogan Campus

department: Biotechnology Institute

country: Turkey

institute: Ankara University

description: miRNA expression data from granulosa cell from control patient

hyb_protocol: 500 ng of total RNA were hybridized for 18 hours at 48oC on Affymetrix miRNA 3.0 array. Chips were washed and stained in the Affymetrix GeneChip Fluidics Station 450.

scan_protocol: Arrays were scanned using the Affymetrix Genechip Scanner 3000 according to the manufacturer's instructions.

data_processing: The data were normalized with Affymetrix Expression Console v1.4.1 using Affymetrix default normalization settings (RMA+DABG-All_Organisms Normalization).

label: Biotin

source_name: mural granulosa cells from control individual (male factor infertility)

label_protocol: miRNAs were polyadenylated and labeled by Affymetrix FlashTag Biotin HSR RNA Labeling Kit according to the manufacturer's instructions.

extract_protocol: QIAzol (Qiagen) extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Follicular fluid was collected from the patients during in-vitro fertilization treatment. Granulosa cells were isolated from the follicular fluid with Biocoll phase-gradient separating solution.

value: ovary

value: mural granulosa cell

tag: diagnosis

value: Control (healthy)

tag: age


title: Control_Granulosa_bio_rep_10

tag: tissue


title: Control_Granulosa_bio_rep_6


title: Control_Granulosa_bio_rep_8


title: Control_Granulosa_bio_rep_9


title: Control_Granulosa_bio_rep_12


title: Control_Granulosa_bio_rep_11


title: Control_Granulosa_bio_rep_7


title: Control_Granulosa_bio_rep_4


title: Control_Granulosa_bio_rep_2


title: PCOS_Granulosa_bio_rep_13

description: miRNA expression data from granulosa cell from PCOS patient

source_name: mural granulosa cells from PCOS patient

value: PCOS


title: Control_Granulosa_bio_rep_1


title: PCOS_Granulosa_bio_rep_11


title: PCOS_Granulosa_bio_rep_15


title: PCOS_Granulosa_bio_rep_10


title: Control_Granulosa_bio_rep_3


title: Control_Granulosa_bio_rep_5


title: PCOS_Granulosa_bio_rep_9


title: PCOS_Granulosa_bio_rep_14


title: PCOS_Granulosa_bio_rep_8


title: PCOS_Granulosa_bio_rep_12


title: PCOS_Granulosa_bio_rep_6


title: PCOS_Granulosa_bio_rep_7


title: PCOS_Granulosa_bio_rep_4


title: PCOS_Granulosa_bio_rep_2


title: PCOS_Granulosa_bio_rep_1


title: Uninfected HeLa cells

city: Piscataway

first: Joseph

last: Dougherty

state: NJ

address: 675 Hoes Lane West

department: Department of Pharmacology

institute: Rutgers University - Robert Wood Johnson Medical School

description: Uninfected

hyb_protocol: System Biosciences hybridized the labeled cDNA to the Affymetrix GeneChip Array (HG-U133+ 2.0) using GeneChip Hybridization Oven 640 and washed and stained using GeneChip Fluidics Station 450 as a fee for service according to GeneChip Expression Analysis Technical Manual (P/N 702232 Rev. 3): Chapter 3

scan_protocol: GeneChips were scanned using GeneChip Scanner 3000 7G

data_processing:
The data were analyzed with GeneChip Operating Software v1.4 using default analysis and normalization settings
GeneChip Operating Software v1.4 signal intensities per probeset ID were averaged for each individual microarray. In other words, probeset signal intensities were averaged for the experimental sample microarray and probeset signal intensities were averaged for the reference control sample microarray). Averages per probeset ID are reported in two separate columns in the matrix file according to which array they were obtained from.

source_name: Unifected HeLa cells transduced with shRNA library and cultured for 17 days

label_protocol: System Biosciences amplified the cDNA using Biotin-conjugated primers as a fee for service according to GeneChip Expression Analysis Technical Manual (P/N 702232 Rev. 3): Chapter 2

growth_protocol: HeLa cells transduced with the shRNA library were cultured for 17 days in standard conditions (37 degrees celsius with 5% CO2) in MEM GlutaMAX medium (Life Technologies, Grand Island, NY) supplemented with 10% FetalClone III Serum (Thermo Scientific Hyclone, Logan, UT), 2X MEM Non-essential amino acids solution (Life Technologies, Grand Island, NY), 100U/mL penicillin-100μg/mL streptomycin solution (Life Technologies, Grand Island, NY), and 0.75μg/mL Puromycin (Sigma-Aldrich, St. Louis, MO).

extract_protocol: System Biosciences isolated total RNA, reverse transcribed the RNA into cDNA, and amplified the cDNA as a fee for service according to GeneChip Expression Analysis Technical Manual (P/N 702232 Rev. 3): Chapter 2

treatment_protocol: Latently infected and unifected HeLa cells were transduced with the lentiviral shRNA library for 6 hours at an MOI of approximately 0.4. Transduced cells were selected with Puromycin and cultured for a total of 17 days, which was experimentally determined to provide ample time for shRNA expression and knockdown of the target gene, as well as viral reactivation and viral protein-mediated cell death in the experimental sample. In other words, a negative selection protocol was used to identify shRNAs that activated latent virus by taking advantage of the cytotoxic effects of the HIV-1 viral protein Vpr.

value: Human epithelial carcinoma cell line

value: HeLa

tag: infection

value: Uninfected


title: Latently infected HeLa cells

description: Latently infected with an HIV-1 NL4-3-derived reporter construct that is rendered replication-incompetent via deletions in pol and env and expresses red fluorescence protein (RFP) from the nef position and Renilla luciferase (RLUC) from the env position upon viral reactivation.

source_name: Latently infected HeLa cells transduced with shRNA library and cultured for 17 days


title: PCOS_Granulosa_bio_rep_3


title: PCOS_Granulosa_bio_rep_5


title: Wanokaka51 [GRC14300313]

type: genomic

city: Tucson

first: Tatiana

middle: M.

last: Karafet

state: AZ

address: BSW #246, 1041 E Lowell Str.

department: ARL

institute: University of Arizona

description: Genomic DNA extracted from blood was genotyped using Illumina HumanOmniExpress-24 v1.0 BeadChip platform.

hyb_protocol: Standard Illumina procedures.

scan_protocol: Standard Illumina procedures.

data_processing:
Illumina GenomeStudio Software has been used to analyze the data. GenomeStudio Genotyping Module Version is  1.9.4.
Genotype data is provided in each sample record.Dataset is also converted into PLINK format (http://pngu.mgh.harvard.edu/~purcell/plink/) . Files INDONESIA_SUMBA_TIMOR.bed  INDONESIA_SUMBA_TIMOR.bim  INDONESIA_SUMBA_TIMOR.fam  are provided.

source_name: blood

label_protocol: Standard Illumina procedures.

extract_protocol: Extraction of genomic DNA from blood was performed using standard extraction protocols.

value: Wanokaka

tag: island

value: Sumba

tag: country

value: Indonesia

tag: region

value: Southeast Asia

tag: gender

value: Male


title: Wanokaka25 [GRC14300297]

tag: population


title: Wanokaka46 [GRC14300311]


title: Wanokaka49 [GRC14300312]


title: Wanokaka38 [GRC14300306]


title: Wanokaka44 [GRC14300309]


title: Wanokaka41 [GRC14300307]


title: Wanokaka34 [GRC14300305]


title: Wanokaka27 [GRC14300299]


title: Wanokaka32 [GRC14300303]


title: Wanokaka01 [GRC14300284]


title: Wanokaka31 [GRC14300302]


title: Wanokaka45 [GRC14300310]


title: Wanokaka23 [GRC14300296]


title: Wanokaka21 [GRC14300295]


title: Wanokaka02 [GRC14300285]


title: Wanokaka16 [GRC14300290]


title: Wanokaka12 [GRC14300287]


title: Wanokaka33 [GRC14300304]


title: Wanokaka17 [GRC14300291]


title: Wanokaka20 [GRC14300294]


title: Wanokaka52 [GRC14300314]


title: Wanokaka28 [GRC14300300]


title: Wanokaka30 [GRC14300301]


title: Wanokaka07 [GRC14300286]


title: Wanokaka26 [GRC14300298]


title: Wanokaka19 [GRC14300293]


title: Wanokaka18 [GRC14300292]


title: Wanokaka14 [GRC14300288]


title: Wanokaka15 [GRC14300289]


title: Umanen_Lawalu47 [GRC14300282]

value: Umanen Lawalu

value: Timor


title: Umanen_Lawalu09 [GRC14300278]


title: Kamanasa38 [GRC14300273]

value: Kamanasa


title: Mamboro19 [GRC14300254]

value: Mamboro


title: Kamanasa23 [GRC14300271]


title: Mamboro40 [GRC14300264]


title: Mamboro46 [GRC14300266]


title: Kamanasa28 [GRC14300272]


title: Kamanasa22 [GRC14300270]


title: Mamboro34 [GRC14300259]


title: Mamboro37 [GRC14300261]


title: Mamboro41 [GRC14300265]


title: Mamboro39 [GRC14300263]


title: Mamboro35 [GRC14300260]


title: Mamboro16 [GRC14300251]


title: Mamboro18 [GRC14300253]


title: Mamboro38 [GRC14300262]


title: Mamboro23 [GRC14300255]


title: Umanen_Lawalu08 [GRC14300277]


title: Mamboro10 [GRC14300247]


title: Mamboro47 [GRC14300267]


title: Mamboro31 [GRC14300258]


title: Mamboro17 [GRC14300252]


title: Mamboro29 [GRC14300256]


title: Mamboro09 [GRC14300246]


title: Mamboro50 [GRC14300268]


title: Mamboro14 [GRC14300249]


title: Mamboro15 [GRC14300250]


title: Mamboro30 [GRC14300257]


title: Mamboro11 [GRC14300248]


title: Mamboro02 [GRC14300240]


title: Loli35 [GRC14300236]

value: Loli


title: Mamboro06 [GRC14300243]


title: Loli34 [GRC14300235]


title: Loli37 [GRC14300237]


title: Loli23 [GRC14300227]


title: Loli32 [GRC14300233]


title: Loli17 [GRC14300222]


title: Loli22 [GRC14300226]


title: Loli25 [GRC14300228]


title: Loli21 [GRC14300225]


title: Loli29 [GRC14300231]


title: Mamboro03 [GRC14300241]


title: Loli20 [GRC14300224]


title: Loli18 [GRC14300223]


title: Loli15 [GRC14300220]


title: Loli31 [GRC14300232]


title: Mamboro07 [GRC14300244]


title: Loli38 [GRC14300238]


title: Loli33 [GRC14300234]


title: Loli13 [GRC14300218]


title: Mamboro01 [GRC14300239]


title: Loli12 [GRC14300217]


title: Loli16 [GRC14300221]


title: Mamboro08 [GRC14300245]


title: Mamboro04 [GRC14300242]


title: Loli14 [GRC14300219]


title: Loli27 [GRC14300230]


title: Loli26 [GRC14300229]


title: Loli11 [GRC14300216]


title: Loli06 [GRC14300212]


title: Loli07 [GRC14300213]


title: Loli08 [GRC14300214]


title: Loli04 [GRC14300210]


title: Lamboya39 [GRC14300203]

value: Lamboya


title: Lamboya35 [GRC14300200]


title: Lamboya48 [GRC14300208]


title: Loli02 [GRC14300209]


title: Loli10 [GRC14300215]


title: Lamboya24 [GRC14300194]


title: Lamboya26 [GRC14300195]


title: Lamboya41 [GRC14300205]


title: Lamboya31 [GRC14300198]


title: Lamboya36 [GRC14300201]


title: Lamboya40 [GRC14300204]


title: Lamboya38 [GRC14300202]


title: Lamboya32 [GRC14300199]


title: Lamboya43 [GRC14300206]


title: Lamboya23 [GRC14300193]


title: Lamboya19 [GRC14300191]


title: Loli05 [GRC14300211]


title: Lamboya45 [GRC14300207]


title: Lamboya17 [GRC14300189]


title: Lamboya16 [GRC14300188]


title: Lamboya15 [GRC14300187]


title: Lamboya20 [GRC14300192]


title: Lamboya14 [GRC14300186]


title: Lamboya18 [GRC14300190]


title: Lamboya28 [GRC14300197]


title: Lamboya27 [GRC14300196]


title: Lamboya12 [GRC14300185]


title: Lamboya08 [GRC14300184]


title: Kodi43 [GRC14300176]

value: Kodi


title: Kodi39 [GRC14300172]


title: Kodi44 [GRC14300177]


title: Kodi41 [GRC14300174]


title: Lamboya07 [GRC14300183]


title: Kodi27 [GRC14300162]


title: Lamboya02 [GRC14300179]


title: Kodi25 [GRC14300161]


title: Kodi31 [GRC14300165]


title: Kodi34 [GRC14300168]


title: Kodi30 [GRC14300164]


title: Lamboya05 [GRC14300182]


title: Kodi42 [GRC14300175]


title: Kodi40 [GRC14300173]


title: Lamboya03 [GRC14300180]


title: Kodi45 [GRC14300178]


title: Kodi32 [GRC14300166]


title: Kodi33 [GRC14300167]


title: Kodi35 [GRC14300169]


title: Kodi38 [GRC14300171]


title: Lamboya04 [GRC14300181]


title: Kodi22 [GRC14300158]


title: Kodi24 [GRC14300160]


title: Kodi15 [GRC14300156]


title: Kodi21 [GRC14300157]


title: Kodi07 [GRC14300154]


title: Kodi28 [GRC14300163]


title: Kodi08 [GRC14300155]


title: Kodi06 [GRC14300153]


title: Kodi23 [GRC14300159]


title: Kodi01 [GRC14300149]


title: Rindi86 [GRC14300143]

value: Rindi


title: Kodi05 [GRC14300152]


title: Rindi93 [GRC14300146]


title: Rindi92 [GRC14300145]


title: Rindi73 [GRC14300137]


title: Rindi83 [GRC14300141]


title: Rindi91 [GRC14300144]


title: Rindi98 [GRC14300148]


title: Kodi04 [GRC14300151]


title: Rindi68 [GRC14300135]


title: Rindi85 [GRC14300142]


title: Rindi72 [GRC14300136]


title: Rindi77 [GRC14300139]


title: Kodi03 [GRC14300150]


title: Rindi54 [GRC14300129]


title: Rindi57 [GRC14300131]


title: Rindi74 [GRC14300138]


title: Rindi58 [GRC14300132]


title: Rindi81 [GRC14300140]


title: Rindi94 [GRC14300147]


title: Rindi59 [GRC14300133]


title: Rindi60 [GRC14300134]


title: Rindi56 [GRC14300130]


title: Rindi53 [GRC14300128]


title: Rindi50 [GRC14300127]


title: Wunga38 [GRC14300124]

value: Wunga


title: Wunga42 [GRC14300126]


title: Wunga31 [GRC14300119]


title: Wunga37 [GRC14300123]


title: Wunga36 [GRC14300122]


title: Wunga35 [GRC14300121]


title: Wunga28 [GRC14300116]


title: Wunga33 [GRC14300120]


title: Liver_HFD_rep10

city: Reus

first: Josep

middle: Maria

last: del Bas

state: Tarragona

address: Avd Universitat 1

country: Spain

institute: Centre tecnològic de Nutrició i Salut

hyb_protocol: protocol was acording Agilent Two-Color Microarray- Based Exon_LIQA WT Labeling Protocol. Dye-swap was performed in order to avoid dye label bias.

scan_protocol: Custom 60-mer microarrays printed with SurePrint technology were used for this study (Agilent Technologies, Palo Alto, USA). Microarrays were applied according manufacturer's conditions and data was analysed using limma software

data_processing: Data acquisition, background substraction with the minimum method, normalization within arrays with the loess method, between arrays with the Aquantile method, spot averaging, linear model construction using pooled control samples (STD) and subsequent  empirical Bayesian moderation were performed using the  Limma package for R (Nucleic Acids Research 43(7), e47.) standard parameters of the Limma package.

label: Cy3 (STD) and Cy5 (HFD)

organism: Mesocricetus auratus

source_name: STD and HFD diet

label_protocol: For Cy3 and Cy5 labeled cRNA synthesis, 100 ng of liver RNA were processed with the Agilent's Low Input Quick Amp WT Labeling Kit (Agilent Technologies, Santa Clara, CA, USA) following the manufacturer’s instructions. The resulting labeled cRNA was purified with the Qiagen RNAeasy Mini Spin (Izasa, Barcelona, Spain). cRNA quality, quantity and the Cy3 and Cy5 labeling specific activity were evaluated with a NanoDrop ND-1000 spectrophotometer (NanoDrop Technologies Wilmintog, Delaware, USA).

extract_protocol: The RNeasy kit (Qiagen) was used following manufacturer instructions

value: male

value: liver

label: Cy5 (STD) and Cy3 (HFD)

tag: tag


title: Wunga29 [GRC14300117]


title: Wunga27 [GRC14300115]


title: Liver_HFD_rep8


title: Liver_HFD_rep9


title: Wunga19 [GRC14300109]


title: Wunga10 [GRC14300103]


title: Wunga23 [GRC14300112]


title: Wunga12 [GRC14300107]


title: Wunga21 [GRC14300111]


title: Wunga26 [GRC14300114]


title: Wunga30 [GRC14300118]


title: Wunga08 [GRC14300101]


title: Liver_HFD_rep6


title: Wunga20 [GRC14300110]


title: Wunga09 [GRC14300102]


title: Liver_HFD_rep4


title: Liver_HFD_rep5


title: Liver_HFD_rep7


title: Liver_HFD_rep2


title: Wunga07 [GRC14300100]


title: Wunga06 [GRC14300099]


title: Rindi100 [GRC14300104]


title: Wunga03 [GRC14300097]


title: Wunga24 [GRC14300113]


title: Wunga15 [GRC14300108]


title: Wunga39 [GRC14300125]


title: KOSR Rep3 HVJu5.1

city: New York

first: Sophie

middle: M

last: Morgani

state: NY

address: Rockefeller Research Labs, 430 E 67th St

department: Development Program

institute: Sloan Kettering Institute, MSKCC

description: Gene expression after a minimun of 3 passages in KOSR/LIF

hyb_protocol: Hybridisation was carried out using the version 6.6 of the Agilent one-colour microarray-based gene expression analysis (low input quick amp labelling) protocol as per manufacturers instructions.

scan_protocol: Scanning was carried out using the version 6.6 of the Agilent one-colour microarray-based gene expression analysis (low input quick amp labelling) protocol as per manufacturers instructions.

data_processing:
Sample data was normalized using quantile normalization. Outliers were fixed as follows:
(1) Principal component analysis (PCA) for individual replications indicated that replications #1 and #5 for KOSRL are biased for some genes. Thus, these arrays were adjusted first. If the value in arrays #1 and/or #5 was 5 fold higher (or lower) than both the median in all arrays and average in replications #2,3,4 (good arrays), then the value was replaced by the average in replications #2,3,4.
(2) The second round of outlier correction was done for all arrays: if the value in a given array was 5 fold higher (or lower) than both the median in all arrays and the average in other replications for the same cell type, then the value was replaced by the average in other replications for the same cell type.

source_name: HVJu5.1 ES cells maintained in KOSR/LIF, replicate 3

label_protocol: mRNA was labelled with Cyanine3-CTP dye using the version 6.6 of the Agilent one-colour microarray-based gene expression analysis (low input quick amp labelling) protocol as per manufacturers instructions.

growth_protocol: ES cell lines were grown in 3 separate media conditions (standard serum/LIF, 2i/LIF or KOSR/LIF) for at least 3 passages.

extract_protocol: mRNA was extracted using Qiagen Rneasy kit as per manufacturers instructions.

tag: background strain

value: embryonic stem cell


title: Wunga02 [GRC14300096]


title: Liver_HFD_rep3


title: Liver_HFD_rep1


title: Wunga04 [GRC14300098]


title: Wunga01 [GRC14300095]


title: Rindi102 [GRC14300105]


title: KOSR Rep2 HVJu9.3

source_name: HVJu9.3 ES cells maintained in KOSR/LIF, replicate 2


title: Anakalang49 [GRC14300094]

value: Anakalang


title: HSA_LOW_1

city: Paris

first: Ana

last: Cumano

address: 25 Rue du Dr. Roux

department: Immunology

country: France

institute: Pasteur Institute

hyb_protocol: Gene expression was determined by hybridization of the labeled template to HuGene 1.0 ST microarrays (Affymetrix, Inc.,Santa Clara, CA). Hybridization cocktail and post-hybridization processing was performed according to the “Target Preparation for Affymetrix GeneChip® Eukaryotic Array Analysis” protocol found in the appendix of the Nugen protocol of the fragmentation kit. Arrays were hybridized for 18 hours and washed using fluidics protocol FS450_0007 on a GeneChip Fluidic Station 450 (Affymetrix, Inc.)

scan_protocol: Data was scanned with an Affymetrix Genechip Scanner 3000, generating CEL files for each array. Three (3) Biological replicates were run for each condition.

data_processing: Quality assessment and normalization of the arrays was performed with the tools available in Expression Console v1.1 (Affymetrix, Inc.,Santa Clara, CA) and  Bioconductor packages

source_name: E13 fetal liver progenitors

label_protocol: For microarray target material used in the study, 50 ng total RNA was reverse transcribed and amplified per the manufacturer’s protocols using the Ovation Pico WTA System v2  (Nugen Technologies, Inc.  #3302-12), fragmented and biotin labeled using the Encore Biotin Module, (Nugen Technologies, Inc. #4200-12).

growth_protocol: Freshly isolated fetal liver cells were depleted of lineage positive cells and lymphoid progenitors were sorted on a FACS Aria III cell sorted directly to RLT buffer.

extract_protocol: RNA was isoalted using the MicroRNAeasy kit from Quiagen France that included a DNAse treatment according to the manufacture's instructions. RNA quality was checked in an Agilent 2100 Bioanalyzer  platform (Agilent Technologies).

tag: progenitors

tag: development stage

value: Embryonic day 13


title: 2i Rep5 HVJu9.3 (2)

description: Gene expression after a minimun of 3 passages in 2i/LIF

source_name: HVJu9.3 ES cells maintained in 2i/LIF, replicate 5

tag: cell type


title: HSA_LOW_2


title: HSA_LOW_3


title: HSA_HIGH_2


title: HSA_HIGH_1


title: HSA_HIGH_3


title: 2i Rep4 HVJu5.1 (2)

source_name: HVJu9.3 ES cells maintained in 2i/LIF, replicate 4


title: Anakalang21 [GRC14300081]

value: Sumba

value: Indonesia


title: a4b7_3

value: Flt3+ a4b7+


title: Tip5-shRNA rep3

city: San Francisco

first: Hunter

last: Richards

state: CA

address: 513 Parnassus Ave., HSW 863

department: Orofacial Sciences

institute: UCSF

description: SAMPLE 6

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing:
The data were normalized using average normalization and subtracting background parameters with GenomeStudio V2011.1. To remove probes for targets that were likely not significant, we consider the intensity value as “1” if signal intensity is less than 1.
Average fold was calculated by the each triplicate ratio of Tip5-shRNA vs control-shRNA (average_fold_data.txt).

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

growth_protocol: E14 cells were maintained in ES medium (knock-out DMEM, 20% fetal bovine serum, 55 µM mercaptoethanol, 1 mM sodium pyruvate, 2 mM glutamine, 0.1 mM nonessential amino acids, and 1000 U/ml mouse LIF), on tissue culture plates coated with 0.1% gelatin, in 6% CO2 at 37°C.

extract_protocol: Total RNA was purified using TRI reagent (Sigma) and further cleaned using the RNeasy kit (Qiagen). The quality of total RNA was confirmed on a Bioanalyzer 2100 (Agilent Technologies, Inc.).

treatment_protocol: Control non-specific shRNA and Tip5 shRNA coned into pSuper vector were electroporated into E14 cells using Amaxa Nucleofector.  To increase the efficiency of Tip5 knockdown, combination of shRNA constructs in different selection markers were used. Seventy-two hours later, transfected cells were further selected for 6 days with appropriate antibiotics.

value: E14 embryonic stem cell from ATCC (CRL-1821)

tag: transfected with

value: Tip5 shRNA

tag: genotype/variation

tag: time point

value: passage 3 after each transfection


title: Anakalang42 [GRC14300090]

value: Southeast Asia

value: Male


title: Anakalang32 [GRC14300084]


title: Anakalang43 [GRC14300091]


title: Anakalang33 [GRC14300085]


title: Anakalang40 [GRC14300089]


title: Anakalang18 [GRC14300079]


title: Anakalang34 [GRC14300086]


title: Anakalang39 [GRC14300088]


title: Anakalang17 [GRC14300078]


title: Wunga11 [GRC14300106]


title: HSA_INT_3


title: Tip5-shRNA rep2

description: SAMPLE 5


title: a4b7_2


title: 2i Rep1 HVJu5.1

source_name: E14 ES cells maintained in 2i/LIF, replicate 1


title: 2i Rep3 E14

source_name: HVJu5.1 ES cells maintained in 2i/LIF, replicate 3


title: a4b7_1


title: Serum Rep3 E14

description: Gene expression after a minimun of 3 passages in serum/LIF

source_name: E14 ES cells maintained in serum/LIF, replicate 3


title: 2i Rep2 HVJu9.3

source_name: HVJu5.1 ES cells maintained in 2i/LIF, replicate 2


title: Anakalang45 [GRC14300092]


title: Anakalang16 [GRC14300077]


title: KOSR Rep1 E14

source_name: E14 ES cells maintained in KOSR/LIF, replicate 1


title: Anakalang14 [GRC14300075]


title: Anakalang30 [GRC14300083]


title: Tip5-shRNA rep1

description: SAMPLE 4


title: Anakalang19 [GRC14300080]


title: Anakalang15 [GRC14300076]


title: Serum Rep1 HVJu5.1

source_name: HVJu5.1 ES cells maintained in serum/LIF, replicate 1


title: HSA_INT_2


title: Serum Rep2 HVJu9.3

source_name: HVJu9.3 ES cells maintained in serum/LIF, replicate 2


title: control-shRNA rep3

description: SAMPLE 3

value: Control non-specific shRNA

value: wild type


title: control-shRNA rep2

description: SAMPLE 2


title: control-shRNA rep1

description: SAMPLE 1


title: HSA_INT_1


title: Anakalang47 [GRC14300093]


title: Anakalang27 [GRC14300082]


title: Anakalang11 [GRC14300072]


title: Anakalang12 [GRC14300073]


title: hPGES2 1n_methylation

status: Public on Jul 13 2016

city: shanghai

first: cuiqing

last: zhong

address: yueyang road 320

institute: institute of biochemistry and cell biology

description: GC6 P13 1N

hyb_protocol: Bisulfite converted DNA was amplified, fragmented and hybridized to Illumina Infinium HumanMethylation450 Beadchip using standard Infinium HD  Methylation Assay protocol.

scan_protocol: Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting.

data_processing: GenomeStudio software v2010.3, Methylation module v1.8.5, Minfi R package

label: Cy5 and Cy3

source_name: G0/G1 haploid ESCs for parthenogenetic blastocysts

label_protocol: Human Infinium HD Methylation Assay, Manual Protocol RevA (standard Illumina Protocol)

growth_protocol: human ESCs were cultured on feeder in human ES medium supplemented with 10μM Y-27635

extract_protocol: QIAGEN blood and tissue kit

treatment_protocol: ESCs were washed with DPBS and trypsinizd with Accutase and collected by centrifugation. After Hoechst33342 staining,G0/G1 cells (1C DNA content) were harvested by FACS.

value: female

tag: cell line


title: hPGES2 2n_methylation

description: GC6 P13 2N

source_name: G0/G1 diploid ESCs for parthenogenetic blastocysts


title: hPGES1 1n_methylation

description: GC5 P13 1N

value: G0/G1 haploid ESCs for parthenogenetic blastocysts


title: human fibroblast_methylation

description: HF P2

source_name: human from skin fibroblast

value: male

value: human forskin fibroblast


title: hPGES1 2n_methylation

description: GC5 P14 2N

value: G0/G1 diploid ESCs for parthenogenetic blastocysts


title: Anakalang37 [GRC14300087]

source_name: blood

value: Anakalang


title: H9 2n_methylation

description: H9 P50 2N

source_name: G0/G1 normal ESCs

value: G0/G1 normal ESCs


title: Anakalang13 [GRC14300074]

value: Sumba


title: genomic DNA from saliva of subject 257

city: Los Angeles

first: Steve

last: Horvath

address: 695 Charles E. Young Drive South, Box 708822

department: Human Genetics

institute: University of California, Los Angeles

description:
genomic DNA from human saliva
X200123470035_R05C02

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing: BeadStudio software v3.2.

label: Cy3 and Cy5

source_name: Saliva

label_protocol: Standard Illumina Protocol

extract_protocol: genomic DNA was extracted and purified from saliva spit cups using the RecoverEase DNA Isolation Kit.

tag: age

tag: ethnicity

value: Hispanic


title: Anakalang10 [GRC14300071]

value: Indonesia


title: genomic DNA from saliva of subject 255

description:
genomic DNA from human saliva
X200123470035_R04C02


title: genomic DNA from saliva of subject 259

description:
genomic DNA from human saliva
X200123470035_R06C02


title: Anakalang05 [GRC14300067]


title: genomic DNA from saliva of subject 251

description:
genomic DNA from human saliva
X200123470035_R02C02

value: Caucasian


title: genomic DNA from saliva of subject 250

description:
genomic DNA from human saliva
X200123470035_R02C01


title: genomic DNA from saliva of subject 253

description:
genomic DNA from human saliva
X200123470035_R03C02


title: Anakalang09 [GRC14300070]


title: genomic DNA from saliva of subject 249

description:
genomic DNA from human saliva
X200123470035_R01C02


title: genomic DNA from saliva of subject 256

description:
genomic DNA from human saliva
X200123470035_R05C01


title: Anakalang08 [GRC14300069]


title: genomic DNA from saliva of subject 258

description:
genomic DNA from human saliva
X200123470035_R06C01


title: genomic DNA from saliva of subject 252

description:
genomic DNA from human saliva
X200123470035_R03C01


title: genomic DNA from saliva of subject 242

description:
genomic DNA from human saliva
X200123470008_R04C01


title: genomic DNA from saliva of subject 246

description:
genomic DNA from human saliva
X200123470008_R06C01


title: genomic DNA from saliva of subject 244

description:
genomic DNA from human saliva
X200123470008_R05C01


title: genomic DNA from saliva of subject 248

description:
genomic DNA from human saliva
X200123470035_R01C01


title: genomic DNA from saliva of subject 245

description:
genomic DNA from human saliva
X200123470008_R05C02


title: Anakalang06 [GRC14300068]

description: Genomic DNA extracted from blood was genotyped using Illumina HumanOmniExpress-24 v1.0 BeadChip platform.


title: genomic DNA from saliva of subject 247

description:
genomic DNA from human saliva
X200123470008_R06C02


title: Anakalang04 [GRC14300066]


title: genomic DNA from saliva of subject 241

description:
genomic DNA from human saliva
X200123470008_R03C02


title: genomic DNA from saliva of subject 238

description:
genomic DNA from human saliva
X200123470008_R02C01


title: genomic DNA from saliva of subject 243

description:
genomic DNA from human saliva
X200123470008_R04C02


title: genomic DNA from saliva of subject 235

description:
genomic DNA from human saliva
X200091640111_R06C02


title: genomic DNA from saliva of subject 239

description:
genomic DNA from human saliva
X200123470008_R02C02


title: genomic DNA from saliva of subject 240

description:
genomic DNA from human saliva
X200123470008_R03C01


title: genomic DNA from saliva of subject 234

description:
genomic DNA from human saliva
X200091640111_R06C01


title: genomic DNA from saliva of subject 237

description:
genomic DNA from human saliva
X200123470008_R01C02


title: genomic DNA from saliva of subject 231

description:
genomic DNA from human saliva
X200091640111_R04C02


title: genomic DNA from saliva of subject 224

description:
genomic DNA from human saliva
X200091640111_R01C01


title: genomic DNA from saliva of subject 229

description:
genomic DNA from human saliva
X200091640111_R03C02


title: genomic DNA from saliva of subject 228

description:
genomic DNA from human saliva
X200091640111_R03C01


title: Anakalang01 [GRC14300065]


title: genomic DNA from saliva of subject 233

description:
genomic DNA from human saliva
X200091640111_R05C02


title: genomic DNA from saliva of subject 254

description:
genomic DNA from human saliva
X200123470035_R04C01


title: genomic DNA from saliva of subject 230

description:
genomic DNA from human saliva
X200091640111_R04C01


title: genomic DNA from saliva of subject 227

description:
genomic DNA from human saliva
X200091640111_R02C02


title: genomic DNA from saliva of subject 232

description:
genomic DNA from human saliva
X200091640111_R05C01


title: genomic DNA from saliva of subject 225

description:
genomic DNA from human saliva
X200091640111_R01C02


title: genomic DNA from saliva of subject 223

description:
genomic DNA from human saliva
X200091640109_R06C02


title: genomic DNA from saliva of subject 219

description:
genomic DNA from human saliva
X200091640109_R04C02


title: genomic DNA from saliva of subject 222

description:
genomic DNA from human saliva
X200091640109_R06C01


title: genomic DNA from saliva of subject 226

description:
genomic DNA from human saliva
X200091640111_R02C01


title: genomic DNA from saliva of subject 216

description:
genomic DNA from human saliva
X200091640109_R03C01


title: genomic DNA from saliva of subject 236

description:
genomic DNA from human saliva
X200123470008_R01C01


title: genomic DNA from saliva of subject 217

description:
genomic DNA from human saliva
X200091640109_R03C02


title: genomic DNA from saliva of subject 218

description:
genomic DNA from human saliva
X200091640109_R04C01


title: genomic DNA from saliva of subject 210

description:
genomic DNA from human saliva
X200091640108_R06C01


title: genomic DNA from saliva of subject 211

description:
genomic DNA from human saliva
X200091640108_R06C02


title: genomic DNA from saliva of subject 221

description:
genomic DNA from human saliva
X200091640109_R05C02


title: genomic DNA from saliva of subject 212

description:
genomic DNA from human saliva
X200091640109_R01C01


title: genomic DNA from saliva of subject 214

description:
genomic DNA from human saliva
X200091640109_R02C01


title: genomic DNA from saliva of subject 213

description:
genomic DNA from human saliva
X200091640109_R01C02


title: genomic DNA from saliva of subject 209

description:
genomic DNA from human saliva
X200091640108_R05C02


title: genomic DNA from saliva of subject 206

description:
genomic DNA from human saliva
X200091640108_R04C01


title: genomic DNA from saliva of subject 220

description:
genomic DNA from human saliva
X200091640109_R05C01


title: genomic DNA from saliva of subject 208

description:
genomic DNA from human saliva
X200091640108_R05C01


title: genomic DNA from saliva of subject 204

description:
genomic DNA from human saliva
X200091640108_R03C01


title: genomic DNA from saliva of subject 215

description:
genomic DNA from human saliva
X200091640109_R02C02


title: genomic DNA from saliva of subject 207

description:
genomic DNA from human saliva
X200091640108_R04C02


title: genomic DNA from saliva of subject 202

description:
genomic DNA from human saliva
X200091640108_R02C01


title: genomic DNA from saliva of subject 205

description:
genomic DNA from human saliva
X200091640108_R03C02


title: genomic DNA from saliva of subject 200

description:
genomic DNA from human saliva
X200091640108_R01C01


title: genomic DNA from saliva of subject 203

description:
genomic DNA from human saliva
X200091640108_R02C02


title: genomic DNA from saliva of subject 201

description:
genomic DNA from human saliva
X200091640108_R01C02


title: genomic DNA from saliva of subject 193

description:
genomic DNA from human saliva
X200091640092_R03C02


title: genomic DNA from saliva of subject 199

description:
genomic DNA from human saliva
X200091640092_R06C02


title: genomic DNA from saliva of subject 198

description:
genomic DNA from human saliva
X200091640092_R06C01


title: genomic DNA from saliva of subject 191

description:
genomic DNA from human saliva
X200091640092_R02C02


title: genomic DNA from saliva of subject 186

description:
genomic DNA from human saliva
X200091640088_R06C01


title: genomic DNA from saliva of subject 196

description:
genomic DNA from human saliva
X200091640092_R05C01


title: genomic DNA from saliva of subject 192

description:
genomic DNA from human saliva
X200091640092_R03C01


title: genomic DNA from saliva of subject 195

description:
genomic DNA from human saliva
X200091640092_R04C02


title: genomic DNA from saliva of subject 187

description:
genomic DNA from human saliva
X200091640088_R06C02


title: genomic DNA from saliva of subject 184

description:
genomic DNA from human saliva
X200091640088_R05C01


title: genomic DNA from saliva of subject 197

description:
genomic DNA from human saliva
X200091640092_R05C02


title: genomic DNA from saliva of subject 188

description:
genomic DNA from human saliva
X200091640092_R01C01


title: genomic DNA from saliva of subject 194

description:
genomic DNA from human saliva
X200091640092_R04C01


title: genomic DNA from saliva of subject 185

description:
genomic DNA from human saliva
X200091640088_R05C02


title: genomic DNA from saliva of subject 189

description:
genomic DNA from human saliva
X200091640092_R01C02


title: genomic DNA from saliva of subject 183

description:
genomic DNA from human saliva
X200091640088_R04C02


title: genomic DNA from saliva of subject 179

description:
genomic DNA from human saliva
X200091640088_R02C02


title: genomic DNA from saliva of subject 190

description:
genomic DNA from human saliva
X200091640092_R02C01


title: genomic DNA from saliva of subject 181

description:
genomic DNA from human saliva
X200091640088_R03C02


title: genomic DNA from saliva of subject 180

description:
genomic DNA from human saliva
X200091640088_R03C01


title: genomic DNA from saliva of subject 175

description:
genomic DNA from human saliva
X200091640067_R06C02


title: genomic DNA from saliva of subject 182

description:
genomic DNA from human saliva
X200091640088_R04C01


title: genomic DNA from saliva of subject 178

description:
genomic DNA from human saliva
X200091640088_R02C01


title: genomic DNA from saliva of subject 177

description:
genomic DNA from human saliva
X200091640088_R01C02


title: genomic DNA from saliva of subject 174

description:
genomic DNA from human saliva
X200091640067_R06C01


title: genomic DNA from saliva of subject 172

description:
genomic DNA from human saliva
X200091640067_R05C01


title: genomic DNA from saliva of subject 171

description:
genomic DNA from human saliva
X200091640067_R04C02


title: genomic DNA from saliva of subject 176

description:
genomic DNA from human saliva
X200091640088_R01C01


title: genomic DNA from saliva of subject 170

description:
genomic DNA from human saliva
X200091640067_R04C01


title: genomic DNA from saliva of subject 173

description:
genomic DNA from human saliva
X200091640067_R05C02


title: genomic DNA from saliva of subject 164

description:
genomic DNA from human saliva
X200091640067_R01C01


title: genomic DNA from saliva of subject 168

description:
genomic DNA from human saliva
X200091640067_R03C01


title: genomic DNA from saliva of subject 158

description:
genomic DNA from human saliva
X200091640062_R04C01


title: genomic DNA from saliva of subject 162

description:
genomic DNA from human saliva
X200091640062_R06C01


title: genomic DNA from saliva of subject 163

description:
genomic DNA from human saliva
X200091640062_R06C02


title: genomic DNA from saliva of subject 156

description:
genomic DNA from human saliva
X200091640062_R03C01


title: genomic DNA from saliva of subject 166

description:
genomic DNA from human saliva
X200091640067_R02C01


title: genomic DNA from saliva of subject 169

description:
genomic DNA from human saliva
X200091640067_R03C02


title: genomic DNA from saliva of subject 161

description:
genomic DNA from human saliva
X200091640062_R05C02


title: genomic DNA from saliva of subject 160

description:
genomic DNA from human saliva
X200091640062_R05C01


title: genomic DNA from saliva of subject 153

description:
genomic DNA from human saliva
X200091640062_R01C02


title: genomic DNA from saliva of subject 155

description:
genomic DNA from human saliva
X200091640062_R02C02


title: genomic DNA from saliva of subject 159

description:
genomic DNA from human saliva
X200091640062_R04C02


title: genomic DNA from saliva of subject 167

description:
genomic DNA from human saliva
X200091640067_R02C02


title: genomic DNA from saliva of subject 165

description:
genomic DNA from human saliva
X200091640067_R01C02


title: genomic DNA from saliva of subject 150

description:
genomic DNA from human saliva
X200091640061_R06C01


title: genomic DNA from saliva of subject 154

description:
genomic DNA from human saliva
X200091640062_R02C01


title: genomic DNA from saliva of subject 148

description:
genomic DNA from human saliva
X200091640061_R05C01


title: genomic DNA from saliva of subject 152

description:
genomic DNA from human saliva
X200091640062_R01C01


title: genomic DNA from saliva of subject 144

description:
genomic DNA from human saliva
X200091640061_R03C01


title: genomic DNA from saliva of subject 157

description:
genomic DNA from human saliva
X200091640062_R03C02


title: genomic DNA from saliva of subject 151

description:
genomic DNA from human saliva
X200091640061_R06C02


title: genomic DNA from saliva of subject 140

description:
genomic DNA from human saliva
X200091640061_R01C01


title: genomic DNA from saliva of subject 142

description:
genomic DNA from human saliva
X200091640061_R02C01


title: genomic DNA from saliva of subject 141

description:
genomic DNA from human saliva
X200091640061_R01C02


title: genomic DNA from saliva of subject 145

description:
genomic DNA from human saliva
X200091640061_R03C02


title: genomic DNA from saliva of subject 149

description:
genomic DNA from human saliva
X200091640061_R05C02


title: genomic DNA from saliva of subject 147

description:
genomic DNA from human saliva
X200091640061_R04C02


title: genomic DNA from saliva of subject 143

description:
genomic DNA from human saliva
X200091640061_R02C02


title: genomic DNA from saliva of subject 146

description:
genomic DNA from human saliva
X200091640061_R04C01


title: genomic DNA from saliva of subject 131

description:
genomic DNA from human saliva
X200049730103_R02C01


title: genomic DNA from saliva of subject 130

description:
genomic DNA from human saliva
X200049730103_R01C02


title: genomic DNA from saliva of subject 126

description:
genomic DNA from human saliva
X200049730077_R05C01


title: genomic DNA from saliva of subject 136

description:
genomic DNA from human saliva
X200049730103_R04C02


title: genomic DNA from saliva of subject 134

description:
genomic DNA from human saliva
X200049730103_R03C02


title: genomic DNA from saliva of subject 129

description:
genomic DNA from human saliva
X200049730103_R01C01


title: genomic DNA from saliva of subject 132

description:
genomic DNA from human saliva
X200049730103_R02C02


title: genomic DNA from saliva of subject 137

description:
genomic DNA from human saliva
X200049730103_R05C01


title: genomic DNA from saliva of subject 138

description:
genomic DNA from human saliva
X200049730103_R06C01


title: genomic DNA from saliva of subject 139

description:
genomic DNA from human saliva
X200049730103_R06C02


title: genomic DNA from saliva of subject 125

description:
genomic DNA from human saliva
X200049730077_R04C02


title: genomic DNA from saliva of subject 119

description:
genomic DNA from human saliva
X200049730077_R01C02


title: genomic DNA from saliva of subject 122

description:
genomic DNA from human saliva
X200049730077_R03C01


title: genomic DNA from saliva of subject 124

description:
genomic DNA from human saliva
X200049730077_R04C01


title: genomic DNA from saliva of subject 120

description:
genomic DNA from human saliva
X200049730077_R02C01


title: genomic DNA from saliva of subject 115

description:
genomic DNA from human saliva
X200049730005_R05C02


title: genomic DNA from saliva of subject 121

description:
genomic DNA from human saliva
X200049730077_R02C02


title: genomic DNA from saliva of subject 117

description:
genomic DNA from human saliva
X200049730005_R06C02


title: genomic DNA from saliva of subject 112

description:
genomic DNA from human saliva
X200049730005_R04C01


title: genomic DNA from saliva of subject 135

description:
genomic DNA from human saliva
X200049730103_R04C01


title: genomic DNA from saliva of subject 113

description:
genomic DNA from human saliva
X200049730005_R04C02


title: genomic DNA from saliva of subject 118

description:
genomic DNA from human saliva
X200049730077_R01C01


title: genomic DNA from saliva of subject 111

description:
genomic DNA from human saliva
X200049730005_R03C02


title: genomic DNA from saliva of subject 110

description:
genomic DNA from human saliva
X200049730005_R03C01


title: genomic DNA from saliva of subject 123

description:
genomic DNA from human saliva
X200049730077_R03C02


title: genomic DNA from saliva of subject 133

description:
genomic DNA from human saliva
X200049730103_R03C01


title: genomic DNA from saliva of subject 128

description:
genomic DNA from human saliva
X200049730077_R06C02


title: genomic DNA from saliva of subject 116

description:
genomic DNA from human saliva
X200049730005_R06C01


title: genomic DNA from saliva of subject 127

description:
genomic DNA from human saliva
X200049730077_R05C02


title: genomic DNA from saliva of subject 109

description:
genomic DNA from human saliva
X200049730005_R02C02


title: genomic DNA from saliva of subject 105

description:
genomic DNA from human saliva
X200049730004_R06C02


title: genomic DNA from saliva of subject 98

description:
genomic DNA from human saliva
X200049730004_R03C01


title: genomic DNA from saliva of subject 108

description:
genomic DNA from human saliva
X200049730005_R02C01


title: genomic DNA from saliva of subject 102

description:
genomic DNA from human saliva
X200049730004_R05C01


title: genomic DNA from saliva of subject 114

description:
genomic DNA from human saliva
X200049730005_R05C01


title: genomic DNA from saliva of subject 107

description:
genomic DNA from human saliva
X200049730005_R01C02


title: genomic DNA from saliva of subject 99

description:
genomic DNA from human saliva
X200049730004_R03C02


title: genomic DNA from saliva of subject 97

description:
genomic DNA from human saliva
X200049730004_R02C02


title: genomic DNA from saliva of subject 101

description:
genomic DNA from human saliva
X200049730004_R04C02


title: genomic DNA from saliva of subject 103

description:
genomic DNA from human saliva
X200049730004_R05C02


title: genomic DNA from saliva of subject 96

description:
genomic DNA from human saliva
X200049730004_R02C01


title: genomic DNA from saliva of subject 93

description:
genomic DNA from human saliva
X100946230031_R06C02


title: genomic DNA from saliva of subject 85

description:
genomic DNA from human saliva
X100946230031_R02C02


title: genomic DNA from saliva of subject 95

description:
genomic DNA from human saliva
X200049730004_R01C02


title: genomic DNA from saliva of subject 104

description:
genomic DNA from human saliva
X200049730004_R06C01


title: genomic DNA from saliva of subject 86

description:
genomic DNA from human saliva
X100946230031_R03C01


title: genomic DNA from saliva of subject 91

description:
genomic DNA from human saliva
X100946230031_R05C02


title: genomic DNA from saliva of subject 94

description:
genomic DNA from human saliva
X200049730004_R01C01


title: genomic DNA from saliva of subject 92

description:
genomic DNA from human saliva
X100946230031_R06C01


title: genomic DNA from saliva of subject 89

description:
genomic DNA from human saliva
X100946230031_R04C02


title: genomic DNA from saliva of subject 88

description:
genomic DNA from human saliva
X100946230031_R04C01


title: genomic DNA from saliva of subject 82

description:
genomic DNA from human saliva
X100946230031_R01C01


title: genomic DNA from saliva of subject 84

description:
genomic DNA from human saliva
X100946230031_R02C01


title: genomic DNA from saliva of subject 90

description:
genomic DNA from human saliva
X100946230031_R05C01


title: genomic DNA from saliva of subject 83

description:
genomic DNA from human saliva
X100946230031_R01C02


title: genomic DNA from saliva of subject 79

description:
genomic DNA from human saliva
X100946230030_R05C01


title: genomic DNA from saliva of subject 74

description:
genomic DNA from human saliva
X100946230030_R02C02


title: genomic DNA from saliva of subject 71

description:
genomic DNA from human saliva
X100946230030_R01C01


title: genomic DNA from saliva of subject 70

description:
genomic DNA from human saliva
X100946230024_R06C02


title: genomic DNA from saliva of subject 58

description:
genomic DNA from human saliva
X100946200165_R06C02


title: genomic DNA from saliva of subject 66

description:
genomic DNA from human saliva
X100946230024_R04C02


title: genomic DNA from saliva of subject 65

description:
genomic DNA from human saliva
X100946230024_R04C01


title: genomic DNA from saliva of subject 78

description:
genomic DNA from human saliva
X100946230030_R04C02


title: genomic DNA from saliva of subject 67

description:
genomic DNA from human saliva
X100946230024_R05C01


title: genomic DNA from saliva of subject 64

description:
genomic DNA from human saliva
X100946230024_R03C02


title: genomic DNA from saliva of subject 61

description:
genomic DNA from human saliva
X100946230024_R02C01


title: genomic DNA from saliva of subject 69

description:
genomic DNA from human saliva
X100946230024_R06C01


title: genomic DNA from saliva of subject 56

description:
genomic DNA from human saliva
X100946200165_R05C02


title: genomic DNA from saliva of subject 57

description:
genomic DNA from human saliva
X100946200165_R06C01


title: genomic DNA from saliva of subject 106

description:
genomic DNA from human saliva
X200049730005_R01C01


title: genomic DNA from saliva of subject 75

description:
genomic DNA from human saliva
X100946230030_R03C01


title: genomic DNA from saliva of subject 59

description:
genomic DNA from human saliva
X100946230024_R01C01


title: genomic DNA from saliva of subject 63

description:
genomic DNA from human saliva
X100946230024_R03C01


title: genomic DNA from saliva of subject 72

description:
genomic DNA from human saliva
X100946230030_R01C02


title: genomic DNA from saliva of subject 60

description:
genomic DNA from human saliva
X100946230024_R01C02


title: genomic DNA from saliva of subject 76

description:
genomic DNA from human saliva
X100946230030_R03C02


title: genomic DNA from saliva of subject 55

description:
genomic DNA from human saliva
X100946200165_R05C01


title: genomic DNA from saliva of subject 81

description:
genomic DNA from human saliva
X100946230030_R06C01


title: genomic DNA from saliva of subject 77

description:
genomic DNA from human saliva
X100946230030_R04C01


title: genomic DNA from saliva of subject 54

description:
genomic DNA from human saliva
X100946200165_R04C02


title: genomic DNA from saliva of subject 68

description:
genomic DNA from human saliva
X100946230024_R05C02


title: genomic DNA from saliva of subject 62

description:
genomic DNA from human saliva
X100946230024_R02C02


title: genomic DNA from saliva of subject 100

description:
genomic DNA from human saliva
X200049730004_R04C01


title: genomic DNA from saliva of subject 53

description:
genomic DNA from human saliva
X100946200165_R04C01


title: genomic DNA from saliva of subject 80

description:
genomic DNA from human saliva
X100946230030_R05C02


title: genomic DNA from saliva of subject 49

description:
genomic DNA from human saliva
X100946200165_R02C01


title: genomic DNA from saliva of subject 51

description:
genomic DNA from human saliva
X100946200165_R03C01


title: genomic DNA from saliva of subject 73

description:
genomic DNA from human saliva
X100946230030_R02C01


title: genomic DNA from saliva of subject 48

description:
genomic DNA from human saliva
X100946200165_R01C02


title: genomic DNA from saliva of subject 43

description:
genomic DNA from human saliva
X100946200152_R05C01


title: genomic DNA from saliva of subject 46

description:
genomic DNA from human saliva
X100946200152_R06C02


title: genomic DNA from saliva of subject 45

description:
genomic DNA from human saliva
X100946200152_R06C01


title: genomic DNA from saliva of subject 38

description:
genomic DNA from human saliva
X100946200152_R02C01


title: genomic DNA from saliva of subject 47

description:
genomic DNA from human saliva
X100946200165_R01C01


title: genomic DNA from saliva of subject 42

description:
genomic DNA from human saliva
X100946200152_R04C02


title: genomic DNA from saliva of subject 44

description:
genomic DNA from human saliva
X100946200152_R05C02


title: genomic DNA from saliva of subject 40

description:
genomic DNA from human saliva
X100946200152_R03C01


title: genomic DNA from saliva of subject 50

description:
genomic DNA from human saliva
X100946200165_R02C02


title: genomic DNA from saliva of subject 41

description:
genomic DNA from human saliva
X100946200152_R03C02


title: genomic DNA from saliva of subject 33

description:
genomic DNA from human saliva
X100946200151_R05C02


title: genomic DNA from saliva of subject 52

description:
genomic DNA from human saliva
X100946200165_R03C02


title: genomic DNA from saliva of subject 35

description:
genomic DNA from human saliva
X100946200151_R06C02


title: genomic DNA from saliva of subject 31

description:
genomic DNA from human saliva
X100946200151_R04C02


title: genomic DNA from saliva of subject 34

description:
genomic DNA from human saliva
X100946200151_R06C01


title: genomic DNA from saliva of subject 32

description:
genomic DNA from human saliva
X100946200151_R05C01


title: genomic DNA from saliva of subject 28

description:
genomic DNA from human saliva
X100946200151_R03C01


title: genomic DNA from saliva of subject 29

description:
genomic DNA from human saliva
X100946200151_R03C02


title: genomic DNA from saliva of subject 87

description:
genomic DNA from human saliva
X100946230031_R03C02


title: genomic DNA from saliva of subject 30

description:
genomic DNA from human saliva
X100946200151_R04C01


title: genomic DNA from saliva of subject 36

description:
genomic DNA from human saliva
X100946200152_R01C01


title: genomic DNA from saliva of subject 26

description:
genomic DNA from human saliva
X100946200151_R02C01


title: genomic DNA from saliva of subject 25

description:
genomic DNA from human saliva
X100946200151_R01C02


title: genomic DNA from saliva of subject 27

description:
genomic DNA from human saliva
X100946200151_R02C02


title: YoungTsimane: genomic DNA from whole blood of subject Sample46

description: genomic DNA from Blood

data_processing:
BeadStudio software v3.2.
Unmethylated and methylated signal intensities and detection p values

source_name: Whole Blood

extract_protocol: genomic DNA was extracted and purified from EDTA tubes using the RecoverEase DNA Isolation Kit.

tag: Sex

value: Tsimane

tag: dnamage

tag: ageaccelerationresidual

tag: ageaccelerationvscaucasian

tag: ieaa

tag: eeaa

tag: plasmablast

tag: cd8 t cell

tag: cd4 t

tag: natural killer

tag: b cell

tag: monocyte

tag: granulocyte


title: genomic DNA from saliva of subject 39

description:
genomic DNA from human saliva
X100946200152_R02C02

tag: gender


title: YoungTsimane: genomic DNA from whole blood of subject Sample42

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 23

description:
genomic DNA from human saliva
X100946200126_R06C02


title: YoungTsimane: genomic DNA from whole blood of subject Sample44

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 24

description:
genomic DNA from human saliva
X100946200151_R01C01


title: YoungTsimane: genomic DNA from whole blood of subject Sample45

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 16

description:
genomic DNA from human saliva
X100946200126_R03C01


title: genomic DNA from saliva of subject 17

description:
genomic DNA from human saliva
X100946200126_R03C02


title: genomic DNA from saliva of subject 14

description:
genomic DNA from human saliva
X100946200126_R02C01


title: genomic DNA from saliva of subject 37

description:
genomic DNA from human saliva
X100946200152_R01C02


title: genomic DNA from saliva of subject 20

description:
genomic DNA from human saliva
X100946200126_R05C01


title: genomic DNA from saliva of subject 12

description:
genomic DNA from human saliva
X100946200126_R01C01


title: genomic DNA from saliva of subject 10

description:
genomic DNA from human saliva
X100946150004_R06C01


title: genomic DNA from saliva of subject 8

description:
genomic DNA from human saliva
X100946150004_R04C02


title: genomic DNA from saliva of subject 15

description:
genomic DNA from human saliva
X100946200126_R02C02


title: genomic DNA from saliva of subject 21

description:
genomic DNA from human saliva
X100946200126_R05C02


title: YoungTsimane: genomic DNA from whole blood of subject Sample36

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 19

description:
genomic DNA from human saliva
X100946200126_R04C02


title: genomic DNA from saliva of subject 18

description:
genomic DNA from human saliva
X100946200126_R04C01


title: YoungTsimane: genomic DNA from whole blood of subject Sample40

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 9

description:
genomic DNA from human saliva
X100946150004_R05C02


title: genomic DNA from saliva of subject 7

description:
genomic DNA from human saliva
X100946150004_R04C01


title: YoungTsimane: genomic DNA from whole blood of subject Sample34

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 22

description:
genomic DNA from human saliva
X100946200126_R06C01


title: YoungTsimane: genomic DNA from whole blood of subject Sample41

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample32

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 13

description:
genomic DNA from human saliva
X100946200126_R01C02


title: YoungTsimane: genomic DNA from whole blood of subject Sample31

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample35

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample28

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample29

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 3

description:
genomic DNA from human saliva
X100946150004_R02C01


title: YoungTsimane: genomic DNA from whole blood of subject Sample26

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample38

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample30

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample25

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample43

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample24

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample37

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample23

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample22

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample21

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample20

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 4

description:
genomic DNA from human saliva
X100946150004_R02C02


title: YoungTsimane: genomic DNA from whole blood of subject Sample19

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample17

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample16

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample15

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample18

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 11

description:
genomic DNA from human saliva
X100946150004_R06C02


title: YoungTsimane: genomic DNA from whole blood of subject Sample14

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 6

description:
genomic DNA from human saliva
X100946150004_R03C02


title: YoungTsimane: genomic DNA from whole blood of subject Sample13

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample11

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 1

description:
genomic DNA from human saliva
X100946150004_R01C01


title: YoungTsimane: genomic DNA from whole blood of subject Sample12

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample10

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample33

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample7

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample9

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample8

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample6

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample5

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample3

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample4

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample39

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample2

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample1

description: genomic DNA from Blood


title: YoungTsimane: genomic DNA from whole blood of subject Sample27

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample335

description: genomic DNA from Blood

tag: natural killer cell


title: PEGforRace: genomic DNA from whole blood of subject Sample333

description: genomic DNA from Blood

tag: age


title: genomic DNA from saliva of subject 2

description:
genomic DNA from human saliva
X100946150004_R01C02

tag: ethnicity


title: PEGforRace: genomic DNA from whole blood of subject Sample334

description: genomic DNA from Blood

tag: Sex


title: PEGforRace: genomic DNA from whole blood of subject Sample332

description: genomic DNA from Blood

tag: dnamage


title: PEGforRace: genomic DNA from whole blood of subject Sample331

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample330

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample328

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample329

description: genomic DNA from Blood


title: genomic DNA from saliva of subject 5

description:
genomic DNA from human saliva
X100946150004_R03C01


title: PEGforRace: genomic DNA from whole blood of subject Sample321

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample320

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample323

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample327

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample322

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample326

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample324

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample325

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample318

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample317

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample316

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample310

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample312

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample309

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample315

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample308

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample313

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample307

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample304

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample306

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample303

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample301

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample319

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample300

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample298

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample302

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample299

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample294

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample295

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample297

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample296

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample292

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample311

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample291

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample290

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample289

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample288

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample314

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample287

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample284

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample282

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample283

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample285

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample305

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample281

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample280

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample278

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample276

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample274

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample275

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample273

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample272

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample293

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample270

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample269

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample268

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample266

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample263

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample262

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample286

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample261

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample260

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample264

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample265

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample259

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample257

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample258

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample256

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample279

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample277

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample253

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample252

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample254

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample250

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample249

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample248

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample247

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample271

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample246

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample245

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample267

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample243

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample244

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample242

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample241

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample239

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample236

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample240

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample235

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample255

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample234

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample238

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample232

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample229

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample228

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample233

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample230

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample225

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample226

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample251

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample224

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample220

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample222

description: genomic DNA from Blood


title: PEGforRace: genomic DNA from whole blood of subject Sample219

description: genomic DNA from Blood