title: CD3-Tcell_female_after-weaning_stress_r2

data_processing: The extracted intensities were then analyzed using the R software environment for statistical computing (R Development Core Team, 2007) (http://www.r-project.org/). Log-ratios of the bound (Cy5) and input (Cy3) microarray channel intensities were computed for each microarray. Microarray quality was assessed using plots generated by the feature extraction software in addition to correlation matrix visualizations. Microarrays were normalized using quantile-normalization 8. Estimates of DNA methylation levels based on microarray probe intensities were obtained using a Bayesian deconvolution algorithm. Differential methylation between groups was determined in two stages. The first stage used linear models implemented in the ‘limma’ package 10 of Bioconductor 11 to compute a modified t-statistic at the individual probe level. As in typical microarray studies, the number of sample profiles is small so there is little information per probe from which to estimate probe variance. Hence, the modified t-statistic for each probe makes use of variance estimates derived from the other probes on the microarray. Correlation between technical replicates was modeled as a random effect using the “block” variable. An individual probe was called differentially methylated if the significance of its t-statistic was at most 0.05 (uncorrected for multiple testing) and the associated difference of log-normalized means between the groups was at least 0.5. In the second stage, differential statistics per promoter were derived from the t-statistics of the probes within the promoter. In particular, the Wilcoxon rank-sum test was used to identify enrichment for probes within the promoter having large positive or large negative t-statistics. The resulting promoter p-values were adjusted for multiple testing by calculating false discovery rates using the Benjamini-Hochberg algorithm. A promoter was called differentially methylated if its false discovery rate was at most 0.2 and it contained at least one probe called differentially methylated, as defined above.

organism: Macaca mulatta

label_protocol: After the sonication step, methylated DNA was immunoprecipitated with 10 μg of anti-5methyl-cytosine antibody (Eurogentec, Fremont, CA, USA) that is specific to DNA methylation, does not recognize hydroxymethylated DNA, and reveals changes in 5-methyl-cytosine exclusively. The DNA antibody complex was immunoprecipitated with protein G, and the methylated DNA was re-suspended in 0.25 ml of digestion buffer (50 mM TRisHCl pH = 8; 10 mM EDTA; 0.5 % SDS) and treated with 40 μg of proteinase K overnight at 55°C. The input and bound fractions were phenol/chloroform-extracted and ethanol-precipitated. The input and bound fractions were amplified using the Whole Genome Amplification Kit (Sigma-Aldrich; St. Luis; MO; USA) and then labeled for microarray hybridization with Cy3-dUTP and Cy5-dUTP, respectively, using the CGH Enzymatic Labeling Kit (Agilent Technologies; Mississauga; ON; Canada) in accordance with the manufacturer´s instructions.

growth_protocol: Male and female rhesus monkeys (Macaca mulatta) were born between 2009 and 2011 and housed at the Laboratory of Comparative Ethology, part of the National Institute of Child Health and Human Development, at the National Institutes of Health Animal Center (Poolesville, MD). In the maternal deprivation experiments monkeys were randomly divided into control (mother-reared, MR) and stress (surrogate peer-reared, SPR) groups at birth. Until imposed weaning (7-8 months of age), the MR monkeys lived with their mothers in large social groups of 8-10 adult females, 1 adult male, and 3-5 same-aged peers. The SPR monkeys lived in individual cages with an inanimate surrogate mother, and continual visual, tactile, and olfactory access to same-aged peers, they had 2 hours of daily socialization periods with age-matched peers. After imposed weaning, all monkeys (MR and SPR) were relocated from their living conditions and placed in a mixed social group in a different building where they lived up through 3 years of age.

extract_protocol: Peripheral blood was drawn into EDTA-coated tubes. PBMCs were isolated through centrifugation with Ficoll-Paque (GE Healthcare, Burnaby, BC, Canada), and T cells were isolated from the PBMCs using CD3+ Dynabeads (Life Technologies, Burlington, ON, Canada). The CD3+ T cell DNA was extracted using the Wizard Genomic DNA Purification kit (Promega; Madison; WI; USA). The dsDNA concentration was measured using the Qubit system (Life Technologies, Burlington, ON, Canada). The 1 month samples were pooled DNA (male and female separately) from 6 control and 5 stress subjects sampled twice, i.e., at postnatal days 14 and day 30, because of low DNA yield in individual samples. The DNA pooling procedure was applied for all time points, using the same amount of dsDNA from each individual sample, creating 4 different groups at the actual developmental stage: male control, male stress, female control, female stress.

tag: gender

value: female

tag: protocol

value: stress

tag: developmental stage

value: after-weaning

tag: chip antibody

value: anti-5-methylcytidine (33D3) antibody (Eurogentec)

tag: cell type

value: CD3+ T lymphocyte


title: FAD_50_Ovary_24h24h_3_X_Y_Z

status: Public on Jul 06 2016

type: RNA

city: Vicksburg

first: Natalia

last: Vinas

state: MS

address: 3909 Halls Ferry Rd

country: USA

institute: Mississippi State University

description:
chemical abbreviations: BPA, bisphenol-A; EE2, 17a-ethynyl estradiol;  FAD, fadrozole; FLU, flutamide; GEM, Gemfibrozil; KTC, ketoconazole; PRO, prochloraz; RDX, hexahydro-1,3,5-trinitro-1,3,5-triazine; TB, 17 -trenbolone; TCC, triclocarban; TNT, 2,4,6-trinitrotoluene; TRI,trilostane; VIN, vinclozolin; WLSSD, effluent from Western Lake Superior Sanitary District
Exposure duration abbreviations: D, day; H, hour; M, minute; HP, hours post exposure ; DP, days post exposure ; ACT, acute
Naming convention for sample names with multiple chemicals: Relative to the corresponding controls, additional chemcials present in a treated sample indicate its exposure conditions.  For example, compared to KTCTNT_Control_Ovary_024h1h_1_X_Y_Z, the treated sample KTCTNTKTC_0.5_Ovary_024h1h_1_X_Y_Z was exposed to the chemical KTC.  Similarly, with TbBPA_Control_Ovary_14d_1_X_Y_Z indicating a control sample, the sample TbBPATbBPA_10_Ovary_14d_1_X_Y_Z was exposed to both Tb and BPA.

hyb_protocol: The Agilent one-color microarray hybridization protocol (One-Color Microarray-Based Gene Expression Analysis, version 5.7, Agilent Technologies, Palo Alto, CA) was used for microarray hybridizations following the manufacturer’s protocol and recommendations.

scan_protocol: An Axon GenePix® 4000A/B Microarray Scanner (Molecular Devices Inc.) was used to scan microarray images at 5 µm resolution

data_processing: Microarray image processing was performed using the latest Agilent's Feature Extraction software available at the time (version 9.5) following the manufacturer’s protocol and recommendations.  Data processing was conducted using R package Limma, in the order of backgroundCorrect(normexp) and normalizeBetweenArrays(quantile).

molecule: total RNA

organism: Pimephales promelas

source_name: ovary tissue, fish exposed to various treatment conditions

label_protocol: cDNA synthesis, cRNA labeling, amplification and hybridization were performed following the manufacturer's kits and protocols (Quick Amp Labeling Kit; Agilent, Palo Alto, CA)

growth_protocol: Sexually mature adult fathead minnows (5-6 month old) were obtained from an on-site aquatic culture facility at the US EPA Mid-Continent Ecology Division, Duluth, MN, USA. Fish were held under a 16:8 light:dark photoperiod fed frozen adult brine shrimp (San Francisco Bay Brand, Newark, CA, USA). Fish survival, water temperature (mean ± SD; 25.0±0.3), and dissolved oxygen (mean ± SD; 7.0±0.2) were monitored daily over the duration of the exposure and did not vary significantly between treatment groups.

extract_protocol: Total RNA was isolated from ovary tissue of both fathead minnow using RNeasy kits (Qiagen, Valencia, CA, USA). RNA quality was evaluated using an Agilent 2100 Bioanalyzer (Agilent, Wilmington, DE, USA) and RNA was quantified spectrophotometrically (Nanodrop). Total RNA samples were stored at -80oC until used for microarray analyses.

treatment_protocol: To initiate a typical experiment, four males and four females were placed together in a glass test tank holding 10 L of Lake Superior water (4 µM filtered, UV sterilized) or test chemical dissolved in Lake Superior water, which was continuously renewed at a rate of about 45 mL/min. There were two such tanks for each treatment condition. The animals were held at 25 +/- 0.5 °C under a 16:8 L:D photoperiod, and were fed brine shrimp to satiation twice per day.

tag: chemical

value: FAD

tag: dose

tag: tissue

value: OVARY

tag: exposure duration

tag: dosage unit

value: ug/L

tag: age (month)

tag: arrayname

tag: featureextractiontime


title: FAD_50_Ovary_24h24h_4_X_Y_Z


title: FAD_Control_Ovary_24h6h_1_X_Y_Z

value: CONTROL


title: FAD_Control_Ovary_24h6h_2_X_Y_Z


title: CD3-Tcell_female_after-weaning_control_r2

type: genomic

city: Montreal

first: Moshe

last: Szyf

state: Quebec

address: McIntyre Medical Building, 3655 Promenade Sir William Osler, Room 1309

department: Pharmacology

country: Canada

institute: McGill University

hyb_protocol: All the steps of hybridization, washing, scanning and feature extraction were performed following the Agilent protocols for chip-on-chip analysis (MeDIP).

scan_protocol: Scanning was performed using the Agilent Technologies Scanner G2505B. Probe intensities were extracted from scanned microarray images using Agilent's Feature Extraction 10.7.3.1 Image Analysis Software

molecule: genomic DNA

value: control


title: FAD_50_Ovary_24h24h_2_X_Y_Z


title: CD3-Tcell_female_after-weaning_stress_r3


title: FAD_50_Ovary_24h24h_1_X_Y_Z


title: CD3-Tcell_female_after-weaning_control_r3


title: CD3-Tcell_female_after-weaning_control_r1


title: CD3-Tcell_male_after-weaning_stress_r3

value: male


title: CD3-Tcell_female_after-weaning_stress_r1


title: CD3-Tcell_male_after-weaning_control_r3


title: CD3-Tcell_male_after-weaning_stress_r1


title: FAD_Control_Ovary_24h24h_2_X_Y_Z


title: FAD_Control_Ovary_24h24h_4_X_Y_Z


title: FAD_Control_Ovary_24h24h_3_X_Y_Z


title: CD3-Tcell_male_after-weaning_stress_r2


title: CD3-Tcell_male_after-weaning_control_r2


title: FAD_Control_Ovary_24h24h_1_X_Y_Z


title: CD3-Tcell_male_after-weaning_control_r1


title: CD3-Tcell_female_before-weaning_stress_r2

value: before-weaning


title: CD3-Tcell_female_before-weaning_control_r2


title: CD3-Tcell_female_before-weaning_control_r1


title: CD3-Tcell_female_before-weaning_stress_r1


title: FAD_50_Ovary_24h12h_4_X_Y_Z


title: FAD_50_Ovary_24h12h_1_X_Y_Z


title: FAD_Control_Ovary_24h12h_4_X_Y_Z


title: CD3-Tcell_male_before-weaning_stress_r3


title: FAD_50_Ovary_24h12h_3_X_Y_Z


title: CD3-Tcell_female_before-weaning_control_r3


title: FAD_50_Ovary_24h12h_2_X_Y_Z


title: CD3-Tcell_male_before-weaning_control_r3


title: FAD_Control_Ovary_24h12h_3_X_Y_Z


title: CD3-Tcell_male_before-weaning_stress_r2


title: CD3-Tcell_female_before-weaning_stress_r3


title: FAD_Control_Ovary_24h12h_1_X_Y_Z


title: CD3-Tcell_male_before-weaning_control_r1


title: CD3-Tcell_male_before-weaning_stress_r1


title: CD3-Tcell_female_1month_stress_r3


title: CD3-Tcell_female_1month_stress_r1


title: FAD_Control_Ovary_24h12h_2_X_Y_Z


title: HUVEC

city: Copenhagen SV

first: Shizuka

last: Uchida

email: heart.lncrna@gmail.com, suc@dcm.aau.dk

address: Frederikskaj 10B, 2. (building C)

department: Department of Clinical Medicine

country: Denmark

institute: Aalborg University

hyb_protocol: Following fragmentation, cRNA were hybridized, washed and stained in the Affymetrix Fluidics Station 400 according to the standard Affymetrix protocol.

scan_protocol: GeneChips were scanned according to the standard Affymetrix protocol.

data_processing: The data were analyzed via R using affy, limma and vsn packages. Since the probe information have not been updated by Affymetrix since December 22, 2010, PERL scripts were written to extract the updated information about mature miRs from miRBase (Kozomara and Griffiths-Jones, 2014) by using the probe sequences given by Affymetrix to pattern match them against "mature.fa" provided by miRBase (downloaded on April 29, 2015). Reference: Kozomara, A., and Griffiths-Jones, S. (2014). miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic acids research 42, D68-73.

label: biotin

organism: Homo sapiens

source_name: HUVEC cells

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol.

growth_protocol: HEK-293 and Hs68 cells were cultured in the growth medium containing 10% FBS (Life Technologies, #10270106) in DMEM with low glucose, pyruvate (Life Technologies, #31885-023) supplemented with antibiotics (penicillin and streptomycin, Sigma-Aldrich, #P4333). All cells were cultured at 37°C in a humidified atmosphere containing 5% CO2.

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instruction.

tag: cell line

value: HUVEC


title: CD3-Tcell_female_1month_control_r3


title: Hs68

source_name: Hs68 cells


title: CD3-Tcell_female_1month_stress_r2


title: CD3-Tcell_male_1month_stress_r2


title: LOC400043-silenced cells using siRNA #2, biological rep2 [miRNA-2_0]

source_name: HEK-293 cells, LOC400043 siRNA

growth_protocol: HEK-293 cells were cultured in the growth medium containing 10% FBS (Life Technologies, #10270106) in DMEM with low glucose, pyruvate (Life Technologies, #31885-023) supplemented with antibiotics (penicillin and streptomycin, Sigma-Aldrich, #P4333). All cells were cultured at 37°C in a humidified atmosphere containing 5% CO2.

treatment_protocol: Transient siRNA transfection (10nM final concentration) was carried out using RNAiMax (Life Technologies) according to the manufacturer's protocol.

tag: sirna


title: CD3-Tcell_female_1month_control_r2


title: LOC400043-silenced cells using siRNA #2, biological rep1 [miRNA-2_0]


title: CD3-Tcell_female_1month_control_r1


title: CD3-Tcell_male_1month_stress_r3


title: CD3-Tcell_male_before-weaning_control_r2


title: LOC400043-silenced cells using siRNA #1, biological rep1 [miRNA-2_0]


title: LINC00324-silenced cells using siRNA #2, biological rep2 [miRNA-2_0]

source_name: HEK-293 cells, LINC00324 siRNA


title: CD3-Tcell_female_2years_control_r3


title: CD3-Tcell_male_1month_control_r2


title: HEK-293

source_name: HEK-293 cells


title: CD3-Tcell_female_2years_stress_r1


title: RHD-reversible PAH 4

city: Ningbo

first: Shiwei

last: Duan

state: Zhejiang

address: 818 Fenghua Road

department: Medical Genetics Centre

country: China

institute: Ningbo University

description:
RHD-reversible PAH
9266441194_R01C02

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing:
GenomeStudio software v2011.1
[non-normalized_data.txt] Unmethylated and methylated signal intensities

label: Cy3 and Cy5

source_name: RHD-PAH

label_protocol: Standard Illumina Protocol

extract_protocol: Nucleic acid extraction analyzer (Lab-Aid 820, Xiamen, China) was used to extract genomic DNA from peripheral blood samples.

value: Female

value: peripheral blood

tag: age

tag: disease state

value: RHD-reversible PAH


title: CD3-Tcell_male_1month_control_r3

tag: gender


title: CD3-Tcell_female_2years_stress_r3

tag: protocol


title: CD3-Tcell_male_1month_control_r1

tag: developmental stage


title: Control 3

description:
normal sample
9266441194_R06C01

source_name: control

value: normal


title: Control 4

description:
normal sample
9266441194_R02C02


title: Control 6

description:
normal sample
9266441194_R06C02


title: Control 5

description:
normal sample
9266441194_R04C02


title: LINC00324-silenced cells using siRNA #2, biological rep1 [miRNA-2_0]


title: CD3-Tcell_female_2years_control_r1

value: female

tag: chip antibody


title: RHD-irreversible PAH 2

description:
RHD-irreversible PAH
9266441194_R05C02

value: RHD-irreversible PAH


title: CD3-Tcell_female_2years_control_r2

tag: cell type


title: CD3-Tcell_female_2years_stress_r2

value: stress


title: RHD-irreversible PAH 1

description:
RHD-irreversible PAH
9266441194_R03C02


title: CD3-Tcell_male_1month_stress_r1

value: anti-5-methylcytidine (33D3) antibody (Eurogentec)


title: CD3-Tcell_male_2years_stress_r3

value: CD3+ T lymphocyte


title: Control 2

description:
normal sample
9266441194_R04C01


title: RHD-reversible PAH 3

description:
RHD-reversible PAH
9266441194_R05C01


title: CD3-Tcell_male_2years_stress_r2


title: RHD-reversible PAH 2

description:
RHD-reversible PAH
9266441194_R03C01


title: CD3-Tcell_male_2years_stress_r1


title: Patient 16

city: South San Francisco

first: Richard

last: Bourgon

state: CA

address: 1 DNA Way, MS 93

department: Bioinformatics & Computational Biology

institute: Genentech, Inc.

hyb_protocol: Per NanoString Total RNA Standard Protocol for formalin-fixed, paraffin-embedded (FFPE) samples.

data_processing: Raw count data were logged (base 2). A synthetic target distribution was computed by averaging expression across all samples for each gene. Raw log-scale expression values for each sample were centered and scaled so as to have the same mean and standard deviation as endogenous (i.e., non-control and non-housekeeping) probes in the synthetic target distribution. Finally, normalized log-expression values were converted to z-score so that each gene had mean 0 and standard deviation 1 across the panel. Note that this conversion took place before 27 outlier samples were dropped; data presented here no longer have row-wise means and SDs of exactly 0 and 1, respectively. See NanoStringQCPro package on Bioconductor for processing of supporting raw count RCC and platform definition RLF files.

label: Nucleotide/fluorophore barcode

source_name: Microdissected FFPE tumor sample, newly diagnosed supratentorial glioblastoma

tag: idh1 status

value: Mutant

tag: phillips subtype

value: Proneural

tag: tcga subtype

tag: treatment

value: Placebo

tag: surgical status

tag: Sex

value: Male

tag: corticosteroids

value: Off

tag: kps

tag: mgmt status

value: Methylated

tag: mmse

tag: rpa class

tag: who

tag: os time to event (months)

tag: os event type (0 = censored)

tag: pfs time to event (months)

tag: pfs event type (0 = censored)


title: Control 1

description:
normal sample
9266441194_R02C01

tag: gender

tag: tissue

tag: age

tag: disease state


title: LINC00324-silenced cells using siRNA #1, biological rep1 [miRNA-2_0]

tag: cell line

tag: sirna


title: siScramble-transfected cells, biological rep2 [miRNA-2_0]

source_name: HEK-293 cells, siScramble

value: Scramble


title: siScramble-transfected cells, biological rep1 [miRNA-2_0]


title: LOC400043-silenced cells using siRNA #1, biological rep2 [miRNA-2_0]


title: LINC00324-silenced cells using siRNA #1, biological rep2 [miRNA-2_0]


title: Horse_3_iDC_horse_serum

city: Guildford

first: Falko

last: Steinbach

address: Daphne Jackson Road

country: United Kingdom

institute: Univ of Surrey

hyb_protocol: Hybridization was performed according to NimbleGen Systems Inc.instructions following their standard operating protocol.

scan_protocol: Hybridised arrays were scanned at 2μm resolution with the Agilent High-resolution C Microarray Scanner (Agilent)

data_processing: Microarray images were processed using DEVA v1.2.1 software (Roche) to obtain a report containing the signal intensity values corresponding to each probe. The raw data was pre-processed using the DEVA v1.2.1 software by log2 transformation followed by RMA normalisation and summarisation to yield a signal intensity value for each probe set.

organism: Equus caballus

source_name: equine myeloid cells

label_protocol: 1 μg was labelled using a one-color DNA labelling kit (NimbleGen, Roche)

growth_protocol: Differentiation into eqMoDC was induced by addition of 25 ng/ml equine GM-CSF and 10 ng/ml equine IL-4 for 3 days

extract_protocol: RNA was extracted using the RNAqueous micro Kit (Life Technologies). RNA quality was assessed with the RNA 6000 Pico Labchip kit on the Agilent 2100 Bioanalyzer (Agilent Technologies). The Ovation PicoSL WTA System v2 kit (NuGEN) was used to amplify cDNA from 50ng total RNA. The MinElute Reaction Cleanup Kit (Qiagen) option was used to purify cDNA

treatment_protocol: One group of

tag: serum used

value: horse serum


title: Horse_3_iDC_fetal_bovine_serum

value: fetal bovine serum


title: Horse_3_mDC_fetal_bovine_serum


title: Patient 12

scan_protocol: Per NanoString Total RNA Standard Protocol for formalin-fixed, paraffin-embedded (FFPE) samples.

tag: idh1 status

tag: phillips subtype

tag: tcga subtype

tag: treatment

tag: surgical status

tag: Sex

value: Female

tag: corticosteroids


title: Horse_3_mDC_horse_serum


title: Horse_3_CD14_Mo

value: no serum


title: CD3-Tcell_male_2years_control_r1

value: male

tag: protocol

value: control

tag: developmental stage

tag: chip antibody

tag: cell type


title: Horse_2_iDC_fetal_bovine_serum


title: CD3-Tcell_male_2years_control_r2

tag: gender


title: PO_191 stress

label_protocol: After the sonication step, methylated DNA was immunoprecipitated with 10 μg of anti-5methylCytosine antibody (Eurogentec, Fremont, CA, USA) that is specific to DNA methylation, does not recognize hydroxymethylated DNA, and reveals changes in 5-methyl-cytosine exclusively. The DNA antibody complex was immunoprecipitated with protein G, and the methylated DNA was re-suspended in 0.25 ml of digestion buffer (50 mM TRisHCl pH = 8; 10 mM EDTA; 0.5 % SDS) and treated with 40 μg of proteinase K overnight at 55°C. The input and bound fractions were phenol/chloroform-extracted and ethanol-precipitated The input and bound fractions were amplified using the Whole Genome Amplification Kit (Sigma-Aldrich; St. Luis; MO; USA) and then labeled for microarray hybridization with Cy3-dUTP and Cy5-dUTP, respectively, using the CGH Enzymatic Labeling Kit (Agilent Technologies; Mississauga; ON; Canada) in accordance with the manufacturer´s instructions.

growth_protocol: Data were obtained from a cohort of mothers and their infants (n = 180) recruited during the third trimester of pregnancy in the Rhine-Neckar Region of Germany. A structured interview and questionnaires were used for risk factor assessment (Supplementary Table S1a). A composite score was calculated to take three different dimensions of stress into account: a) maternal psychopathology (primarily depressive and anxiety symptoms); b) perceived stress; and c) socioeconomic and psychosocial stress (Supplementary Table S1c). Stressful prenatal adverse conditions were also considered in order to define 10 infants with extremely high and 10 infants with extremely low levels of prenatal ELS respectively.

extract_protocol: Cord blood was collected immediately after birth and drawn into ethylenediaminetetraacetic (EDTA) coated tubes. Peripheral blood mononuclear cells (PBMCs) were isolated through centrifugation with Ficoll-Paque (GE Healthcare; Munich; Germany), and CD34+ cells were extracted from PBMCs using the Dynal CD34 Progenitor Cell Selection System (life technologies; Darmstadt; Germany).

value: high levels of prenatal stress

tag: tissue

value: cord blood


title: CD3-Tcell_male_2years_control_r3

value: anti-5-methylcytidine (33D3) antibody (Eurogentec)


title: Horse_2_mDC_horse_serum


title: Horse_2_mDC_fetal_bovine_serum


title: PO_189 stress

value: female


title: PO_190 stress


title: MR_ZI56_bucca

label_protocol: After the sonication step, 2 μg methylated DNA was immunoprecipitated with 5 μg of anti-5methyl-cytosine antibody (Eurogentec , Fremont , CA , USA) that is specific to DNA methylation, does not recognize hydroxymethylated DNA, and reveals changes in 5-methyl-cytosine exclusively. The DNA antibody complex was immunoprecipitated with protein G, and the methylated DNA was re-suspended in 0.25 ml of digestion buffer (50 mM TRisHCl pH = 8 , 10 mM EDTA , 0.5 % SDS) and treated with 40 μg of proteinase K overnight at 55°C. The input and bound fractions were phenol/chloroform-extracted and ethanol-precipitated The input and bound fractions were amplified using the Whole Genome Amplification Kit (Sigma-Aldrich , St. Luis , MO , USA) and then labeled for microarray hybridization with Cy3-dUTP and Cy5-dUTP, respectively, using the CGH Enzymatic Labeling Kit (Agilent Technologies , Mississauga , ON , Canada) in accordance with the manufacturer´s instructions.

growth_protocol: Male rhesus monkeys (Macaca mulatta) were born between 2009 and 2010 and housed at the Laboratory of Comparative Ethology, part of the National Institute of Child Health and Human Development, at the National Institutes of Health Animal Center (Poolesville, MD). In the parental deprivation experiment monkeys were randomly divided into control mother-reared (MR) and surrogate peer-reared (SPR) groups at birth. Until weaning (7-8 months of age), the MR monkeys lived with their mothers in large social groups of 8-10 adult females, 1 adult male, and 3-5 same-aged peers. The SPR monkeys lived in individual cages with an inanimate surrogate mother, and continual visual, tactile, and olfactory access to same-aged peers, they had 2 hours of daily socialization periods with age-matched peers. At imposed weaning, all monkeys (MR and SPR) were relocated from their living conditions and placed in a mixed social group in a different building. Biological samples were collected at the 2 year routine medical check-up under chemical restrain (using ketamine).

extract_protocol: Peripheral blood was drawn into EDTA-coated tubes, and genomic DNA was extracted from 300 μl whole blood using the Wizard Genomic DNA Purification kit (Promega , Madison , WI , USA). Buccal epithelial cells were collected by rubbing cotton swabs on the palate and gum (3 swabs from each subject were isolated together). The dsDNA concentration was measured using the Qubit system (Life Technologies, Burlington, ON, Canada).

value: MR

value: buccal swab


title: SPR_ZI42_bucca

value: SPR


title: MR_ZI40_bucca


title: PO_176 stress


title: SPR_ZI46_bucca


title: MR_ZI60_blood

value: whole blood


title: Horse_2_iDC_horse_serum


title: Horse_2_CD14_Mo


title: PO_156 control


title: MR_ZI60_bucca


title: PO_150 control


title: RHD-reversible PAH 1

description:
RHD-reversible PAH
9266441194_R01C01

value: peripheral blood

tag: age

tag: disease state

value: RHD-reversible PAH


title: SPR_ZI38_bucca


title: PO_145 control


title: SPR_ZI46_blood


title: MR_ZI56_blood


title: Horse_1_mDC_fetal_bovine_serum


title: PO_142 control


title: Horse_1_iDC_fetal_bovine_serum


title: PO_119 stress


title: Horse_1_iDC_horse_serum


title: Horse_1_CD14_Mo


title: PO_170 stress


title: SPR_ZI38_blood


title: Horse_1_mDC_horse_serum


title: PO_132 control


title: CellLine_ZR-75-30

status: Public on Jul 05 2016

city: L'Hospitalet del Llobregat

first: Sebastian

last: Moran

state: Barcelona

address: Av. Gran Via de l'Hospitalet, 199-203

department: PEBC

country: Spain

institute: IDIBELL

description: Sanger cell line

hyb_protocol: Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting

data_processing:
Genome Studio V2011.2
[Matrix.processed.txt] Average beta values and detection p-values.  Available on the Series record.
[Matrix.Signal.Intensities.txt] Unmethylated and methylated signal intensities.  Available on the Series record.

label: Cy3, Cy5

label_protocol: Standard Illumina labelling protocol

extract_protocol: Total DNA was isolated by standard procedures

tag: cell line

tag: primary site

value: breast

tag: primary histology


title: SPR_ZI42_blood


title: CellLine_YT

description: Sanger cell line

source_name: YT

value: YT

value: blood

value: lymphoid_neoplasm other


title: CellLine_YMB-1-E

description: Sanger cell line


title: CellLine_YKG-1

description: Sanger cell line

value: glioma


title: NC-2

city: Shanghai

first: Xiaoxian

last: Qian

address: No. 160 Pu Jian Ave, Shanghai 200127, China.

department: Gastroenterology and Hepatology

institute: Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University

hyb_protocol: 1 μg of each labeled cRNA was fragmented by adding 5 μl 10 × Blocking Agent and 1 μl of 25 × Fragmentation Buffer, then heated the mixture at 60 °C for 30 min, finally 25 μl 2 × GE Hybridization buffer was added to dilute the labeled cRNA. 50 μl of hybridization solution was dispensed into the gasket slide and assembled to the LncRNA expression microarray slide. The slides were incubated for 17 hours at 65°C in an Agilent Hybridization Oven.

scan_protocol: The hybridized arrays were washed, fixed and scanned using the Agilent Scanner G2505C.

data_processing: Agilent Feature Extraction software (version 11.0.1.1) was used to analyze acquired array images. Quantile normalization and subsequent data processing were performed with using the GeneSpring GX v12.1 software package (Agilent Technologies). For expression probes, raw signal intensities were normalized in quantile method by GeneSpring GX v12.1, and low intensity probes were filtered. Then, mRNAs and LncRNAs that at least 1 out of 6 samples have flags in Present or Marginal (“All Targets Value”) were chosen for further data analysis; For the tiling probes, raw signal intensities were firstly normalized in quantile method by GeneSpring GX v12.1. Then, the discrete transcribed regions were determined in the tiling regions by using a signal processing algorithm termed Otsu’s method [1, 2]. Then, the novel transcribed regions were identified by filtering the ones that overlap with the exons of known mRNAs or LncRNAs. The potential T-UCRs, RNA transcripts whose TUs overlap UCRs, UCR-proximal genes and novel transcribed regions, which were statistically differentially expressed, were identified through Volcano Plot filtering. Pathway analysis and GO analysis were applied to determine the roles of the UCR-related differential mRNAs played in these biological pathways or GO terms. Finally, Hierarchical Clustering was performed to show the distinguishable expression patterns of potential T-UCRs, RNA transcripts Whose TUs Overlap UCRs, UCR-proximal genes and novel transcribed regions among samples.

source_name: normal colon mucosa pinch biopsy sample under colonoscopy in  NC volunteers

label_protocol: Sample labeling and array hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technology) with minor modifications. Briefly, mRNAs and LncRNAs were purified from total RNA after removal of rRNA (mRNA-ONLY™ Eukaryotic mRNA Isolation Kit, Epicentre). Then, each sample was amplified and transcribed into fluorescent cRNA along the entire length of the transcripts without 3’ bias utilizing a random priming method (Arraystar Flash RNA Labeling Kit, Arraystar). The labeled cRNAs were purified by RNAeasy Mini Kit (Qiagen). The concentration and specific activity of the labeled cRNAs (pmol Cy3/μg cRNA) were measured by NanoDrop ND-1000.

extract_protocol: Total RNA were extracted using Trizol. The RNA quantity and quality were measured by NanoDrop ND-1000. RNA integrity was assessed by standard denaturing agarose gel electrophoresis.

tag: subject status

value: normal controls (NC) volunteer

tag: tag

value: colon

tag: tissue type

value: normal colon mucosa pinch biopsy


title: CellLine_YAPC

description: Sanger cell line

source_name: YAPC

value: YAPC

value: pancreas


title: MR_ZI40_blood

value: male

value: anti-5-methylcytidine (33D3) antibody (Eurogentec)


title: CellLine_WM793B

description: Sanger cell line

value: skin

value: melanoma


title: CellLine_WM35

description: Sanger cell line


title: CellLine_WSU-NHL

description: Sanger cell line

source_name: WSU-NHL

value: WSU-NHL


title: CellLine_WM278

description: Sanger cell line


title: CellLine_YH-13

description: Sanger cell line


title: PO_121 stress

value: female

value: high levels of prenatal stress

value: cord blood


title: PO_123 control

value: control


title: NC-1


title: CellLine_WM-266-4

description: Sanger cell line


title: CellLine_WM1552C

description: Sanger cell line


title: CellLine_WM-115

description: Sanger cell line


title: SPR_ZH58_blood

value: SPR

value: whole blood


title: CD-1

source_name: inflammed colon mucosa pinch biopsy sample under colonoscopy  in CD patients

value: Crohn's disease (CD) patient

value: inflammed colon mucosa pinch biopsy


title: CellLine_WIL2-NS

description: Sanger cell line

value: blood

value: lymphoid_neoplasm other


title: CellLine_VMRC-RCZ

description: Sanger cell line

source_name: VMRC-RCZ

value: VMRC-RCZ

value: kidney


title: NC-3

value: normal controls (NC) volunteer

value: colon

value: normal colon mucosa pinch biopsy


title: CellLine_VMRC-LCD

description: Sanger cell line

source_name: VMRC-LCD

value: VMRC-LCD

value: lung


title: CellLine_VCAP

description: Sanger cell line

source_name: VCAP

value: VCAP

value: prostate


title: CellLine_VAL

description: Sanger cell line

source_name: VAL

value: VAL


title: PO_086 stress

value: male

value: high levels of prenatal stress

value: anti-5-methylcytidine (33D3) antibody (Eurogentec)

value: cord blood


title: CellLine_VA-ES-BJ

description: Sanger cell line

source_name: VA-ES-BJ

value: VA-ES-BJ


title: CellLine_UWB1-289

description: Sanger cell line

value: ovary


title: PO_083 control

value: female

value: control


title: CellLine_VM-CUB-1

description: Sanger cell line

value: bladder


title: CellLine_U-CH2

description: Sanger cell line

value: bone


title: PO_094 control


title: CellLine_UACC-893

description: Sanger cell line

value: breast


title: CellLine_UACC-62

description: Sanger cell line

value: skin

value: melanoma


title: MR_ZH62_blood

value: MR

value: whole blood


title: CellLine_UACC-257

description: Sanger cell line


title: CellLine_UACC-812

description: Sanger cell line


title: CellLine_U-937

description: Sanger cell line

value: blood

value: lymphoid_neoplasm other


title: CellLine_U-87-MG

description: Sanger cell line

value: glioma


title: CellLine_U-698-M

description: Sanger cell line


title: SPR_ZH60_blood

value: male

value: SPR


title: CellLine_U-118-MG

description: Sanger cell line


title: CellLine_U-2-OS

description: Sanger cell line

value: osteosarcoma


title: PO_116 stress

value: high levels of prenatal stress

value: anti-5-methylcytidine (33D3) antibody (Eurogentec)

value: cord blood


title: MR_ZH61_blood


title: CellLine_U031

description: Sanger cell line

value: kidney


title: CellLine_TYK-NU

description: Sanger cell line

source_name: TYK-NU

value: TYK-NU

value: ovary


title: CellLine_TUR

description: Sanger cell line

source_name: TUR

value: TUR


title: CellLine_TT2609-C02

description: Sanger cell line

value: thyroid


title: PO_073 stress


title: CellLine_TOV-21G

description: Sanger cell line


title: CellLine_TT

description: Sanger cell line

source_name: TT

value: TT


title: CellLine_U-266

description: Sanger cell line

value: myeloma


title: CellLine_TOV-112D

description: Sanger cell line


title: CellLine_T-T

description: Sanger cell line

source_name: T-T

value: T-T

value: oesophagus


title: CellLine_TK10

description: Sanger cell line


title: CellLine_UMC-11

description: Sanger cell line

value: lung


title: CellLine_TK

description: Sanger cell line

source_name: TK

value: TK

value: blood


title: CellLine_THP-1

description: Sanger cell line


title: CellLine_TGW

description: Sanger cell line

source_name: TGW

value: TGW

value: neuroblastoma


title: CellLine_TGBC24TKB

description: Sanger cell line


title: CellLine_WSU-DLCL2

description: Sanger cell line


title: CellLine_TGBC1TKB

description: Sanger cell line


title: CellLine_TGBC11TKB

description: Sanger cell line

value: stomach


title: CellLine_TE-9

description: Sanger cell line


title: CellLine_TE-8

description: Sanger cell line


title: CellLine_TE-6

description: Sanger cell line


title: CellLine_TE-5

description: Sanger cell line


title: CellLine_TE-4

description: Sanger cell line


title: CellLine_TE-15

description: Sanger cell line


title: CellLine_TE-12

description: Sanger cell line


title: CellLine_TE-10

description: Sanger cell line


title: CellLine_TC-YIK

description: Sanger cell line

source_name: TC-YIK

value: TC-YIK

value: cervix


title: CellLine_TCCSUP

description: Sanger cell line

source_name: TCCSUP

value: TCCSUP

value: bladder


title: CellLine_TC-71

description: Sanger cell line

value: bone


title: CellLine_T98G

description: Sanger cell line

value: glioma


title: CellLine_TASK1

description: Sanger cell line


title: CellLine_TE-441-T

description: Sanger cell line

value: rhabdomyosarcoma


title: CellLine_TE-1

description: Sanger cell line


title: CellLine_TE-11

description: Sanger cell line


title: CellLine_T47D

description: Sanger cell line

value: breast


title: CellLine_T-24

description: Sanger cell line


title: CellLine_SW982

description: Sanger cell line


title: CellLine_T84

description: Sanger cell line


title: CellLine_SW962

description: Sanger cell line


title: CellLine_SW954

description: Sanger cell line


title: CellLine_SW872

description: Sanger cell line


title: CellLine_SW837

description: Sanger cell line


title: CellLine_SW780

description: Sanger cell line


title: CellLine_SW756

description: Sanger cell line


title: CellLine_SW-480

description: Sanger cell line


title: CellLine_SW684

description: Sanger cell line

value: fibrosarcoma


title: CellLine_SW626

description: Sanger cell line

value: ovary


title: CD-3

value: Crohn's disease (CD) patient

value: colon

value: inflammed colon mucosa pinch biopsy


title: CD-2


title: CellLine_SW1573

description: Sanger cell line

value: lung


title: CellLine_SW156

description: Sanger cell line

value: kidney


title: CellLine_SW1417

description: Sanger cell line


title: CellLine_U251

description: Sanger cell line


title: CellLine_SW1990

description: Sanger cell line

value: pancreas


title: CellLine_SW1710

description: Sanger cell line


title: CellLine_SW1783

description: Sanger cell line


title: CellLine_SW1463

description: Sanger cell line


title: CellLine_SW13

description: Sanger cell line


title: CellLine_SUP-T1

description: Sanger cell line

value: blood


title: CellLine_SW948

description: Sanger cell line


title: CellLine_SUP-HD1

description: Sanger cell line


title: CellLine_SW1116

description: Sanger cell line


title: CellLine_SW900

description: Sanger cell line


title: CellLine_SUP-B15

description: Sanger cell line


title: CellLine_SW1088

description: Sanger cell line


title: CellLine_SU-DHL-8

description: Sanger cell line


title: CellLine_SU-DHL-6

description: Sanger cell line


title: CellLine_SW48

description: Sanger cell line


title: CellLine_SU-DHL-4

description: Sanger cell line


title: CellLine_SU-DHL-5

description: Sanger cell line


title: CellLine_SU-DHL-16

description: Sanger cell line


title: CellLine_SU-DHL-10

description: Sanger cell line


title: CellLine_SU-DHL-1

description: Sanger cell line


title: CellLine_SW1353

description: Sanger cell line


title: CellLine_SW1271

description: Sanger cell line


title: CellLine_ST486

description: Sanger cell line


title: CellLine_SUP-M2

description: Sanger cell line


title: CellLine_SU8686

description: Sanger cell line


title: CellLine_SNU-C1

description: Sanger cell line


title: CellLine_SNU-C2B

description: Sanger cell line


title: CellLine_SUP-B8

description: Sanger cell line


title: CellLine_SNU-475

description: Sanger cell line

value: liver


title: CellLine_SNU-C5

description: Sanger cell line


title: CellLine_SR

description: Sanger cell line

source_name: SR

value: SR

value: lymphoid_neoplasm other


title: CellLine_SNU-407

description: Sanger cell line


title: CellLine_SNU-61

description: Sanger cell line


title: CellLine_SNU-81

description: Sanger cell line


title: CellLine_SNU-423

description: Sanger cell line


title: CellLine_SNU-398

description: Sanger cell line


title: CellLine_SNU-283

description: Sanger cell line


title: CellLine_SNU-387

description: Sanger cell line


title: CellLine_SNU-449

description: Sanger cell line


title: CellLine_SNU-182

description: Sanger cell line


title: CellLine_SUIT-2

description: Sanger cell line


title: CellLine_SNU-175

description: Sanger cell line


title: CellLine_SNU-1040

description: Sanger cell line


title: CellLine_SNU-1

description: Sanger cell line


title: CellLine_SNG-M

description: Sanger cell line

source_name: SNG-M

value: SNG-M

value: endometrium


title: CellLine_SLVL

description: Sanger cell line

source_name: SLVL

value: SLVL


title: CellLine_SNB75

description: Sanger cell line

value: glioma


title: CellLine_SN12C

description: Sanger cell line


title: CellLine_SK-UT-1

description: Sanger cell line


title: CellLine_SK-PN-DW

description: Sanger cell line

source_name: SK-PN-DW

value: SK-PN-DW

value: bone


title: CellLine_SNU-5

description: Sanger cell line


title: CellLine_SK-OV-3

description: Sanger cell line

value: ovary


title: CellLine_SK-N-SH

description: Sanger cell line

source_name: SK-N-SH

value: SK-N-SH

value: neuroblastoma


title: CellLine_SK-N-AS

description: Sanger cell line

source_name: SK-N-AS

value: SK-N-AS


title: CellLine_SK-N-BE(2)

description: Sanger cell line


title: CellLine_SKN-3

description: Sanger cell line

value: head and neck


title: CellLine_SK-N-FI

description: Sanger cell line

source_name: SK-N-FI

value: SK-N-FI


title: CellLine_SK-NEP-1

description: Sanger cell line

value: kidney


title: CellLine_SKN

description: Sanger cell line

source_name: SKN

value: SKN

value: uterus


title: CellLine_SK-N-DZ

description: Sanger cell line

source_name: SK-N-DZ

value: SK-N-DZ


title: CellLine_SK-MEL-24

description: Sanger cell line

value: skin

value: melanoma


title: CellLine_SK-MM-2

description: Sanger cell line

value: blood

value: myeloma


title: CellLine_SK-MEL-28

description: Sanger cell line


title: CellLine_SK-MG-1

description: Sanger cell line

value: glioma


title: CellLine_SK-MEL-3

description: Sanger cell line


title: CellLine_SK-MEL-31

description: Sanger cell line


title: CellLine_SK-MEL-2

description: Sanger cell line


title: CellLine_SKM-1

description: Sanger cell line

value: haematopoietic_neoplasm other


title: CellLine_SK-MES-1

description: Sanger cell line

value: lung


title: CellLine_SK-MEL-1

description: Sanger cell line


title: CellLine_SK-LMS-1

description: Sanger cell line


title: CellLine_SK-LU-1

description: Sanger cell line


title: CellLine_SK-HEP-1

description: Sanger cell line

value: liver


title: CellLine_SKG-IIIA

description: Sanger cell line

source_name: SKG-IIIA

value: SKG-IIIA

value: cervix


title: CellLine_SK-ES-1

description: Sanger cell line

value: bone


title: CellLine_SK-GT-4

description: Sanger cell line

value: oesophagus


title: CellLine_SK-GT-2

description: Sanger cell line

value: stomach


title: CellLine_SK-CO-1

description: Sanger cell line


title: CellLine_SK-MEL-5

description: Sanger cell line


title: CellLine_SJRH30

description: Sanger cell line

value: rhabdomyosarcoma


title: CellLine_SJSA-1

description: Sanger cell line


title: CellLine_SISO

description: Sanger cell line

source_name: SISO

value: SISO


title: CellLine_SIMA

description: Sanger cell line

source_name: SIMA

value: SIMA

value: neuroblastoma


title: CellLine_SIG-M5

description: Sanger cell line


title: CellLine_SK-MEL-30

description: Sanger cell line

value: skin


title: CellLine_SF539

description: Sanger cell line


title: CellLine_UM-UC-3

description: Sanger cell line

value: bladder


title: CellLine_SF126

description: Sanger cell line


title: CellLine_SCI-1

description: Sanger cell line

value: blood


title: CellLine_SCC-9

description: Sanger cell line

value: head and neck


title: CellLine_SCC-4

description: Sanger cell line


title: CellLine_SH-4

description: Sanger cell line

value: melanoma


title: CellLine_SCC-3

description: Sanger cell line


title: CellLine_SCH

description: Sanger cell line

source_name: SCH

value: SCH


title: CellLine_SCC-25

description: Sanger cell line


title: CellLine_SCABER

description: Sanger cell line

source_name: SCABER

value: SCABER


title: CellLine_SBC-3

description: Sanger cell line

value: lung


title: CellLine_SCC-15

description: Sanger cell line


title: CellLine_SBC-5

description: Sanger cell line


title: CellLine_SAT

description: Sanger cell line

source_name: SAT

value: SAT


title: CellLine_SACC-83

description: Sanger cell line


title: CellLine_SAOS-2

description: Sanger cell line

value: osteosarcoma


title: CellLine_SIHA

description: Sanger cell line

source_name: SIHA

value: SIHA

value: cervix


title: CellLine_S-117

description: Sanger cell line

value: thyroid


title: CellLine_RXF393

description: Sanger cell line

value: kidney


title: CellLine_SBC-1

description: Sanger cell line


title: CellLine_RWPE-1

description: Sanger cell line

value: prostate


title: CellLine_SF268

description: Sanger cell line

value: glioma


title: CellLine_RVH-421

description: Sanger cell line


title: CellLine_RT4

description: Sanger cell line


title: CellLine_SF295

description: Sanger cell line


title: CellLine_RS4-11

description: Sanger cell line

value: leukemia


title: CellLine_SCCH-196

description: Sanger cell line


title: CellLine_RPMI-8866

description: Sanger cell line


title: CellLine_RT-112

description: Sanger cell line


title: CellLine_RPMI-8226

description: Sanger cell line

value: myeloma


title: CellLine_RPMI-7951

description: Sanger cell line

value: skin


title: CellLine_RPMI-8402

description: Sanger cell line

value: blood


title: CellLine_ROS-50

description: Sanger cell line


title: CellLine_RPMI-6666

description: Sanger cell line


title: CellLine_RMG-I

description: Sanger cell line

source_name: RMG-I

value: RMG-I

value: ovary


title: CellLine_RL95-2

description: Sanger cell line

value: endometrium


title: CellLine_RL

description: Sanger cell line

source_name: RL

value: RL


title: CellLine_RKO

description: Sanger cell line

source_name: RKO

value: RKO


title: CellLine_SAS

description: Sanger cell line

source_name: SAS

value: SAS

value: head and neck


title: CellLine_RH-41

description: Sanger cell line

value: rhabdomyosarcoma


title: CellLine_RF-48

description: Sanger cell line

value: stomach


title: CellLine_RH-1

description: Sanger cell line


title: CellLine_RERF-LC-SQ1

description: Sanger cell line

value: lung


title: CellLine_RWPE2-W99

description: Sanger cell line


title: CellLine_RERF-LC-KJ

description: Sanger cell line

source_name: RERF-LC-KJ

value: RERF-LC-KJ


title: CellLine_RCM-1

description: Sanger cell line


title: CellLine_RH-18

description: Sanger cell line


title: CellLine_REH

description: Sanger cell line

source_name: REH

value: REH


title: CellLine_RCC-MF

description: Sanger cell line

source_name: RCC-MF

value: RCC-MF

value: kidney


title: CellLine_RCC-JW

description: Sanger cell line

source_name: RCC-JW

value: RCC-JW


title: CellLine_RC-K8

description: Sanger cell line


title: CellLine_RERF-GC-1B

description: Sanger cell line


title: CellLine_RCH-ACV

description: Sanger cell line

source_name: RCH-ACV

value: RCH-ACV


title: CellLine_RCC-ER

description: Sanger cell line

source_name: RCC-ER

value: RCC-ER


title: CellLine_RD

description: Sanger cell line

source_name: RD

value: RD


title: CellLine_RPMI-2650

description: Sanger cell line


title: CellLine_RCC-FG2

description: Sanger cell line


title: CellLine_RCC-AB

description: Sanger cell line

source_name: RCC-AB

value: RCC-AB


title: CellLine_RO82-W-1

description: Sanger cell line

value: thyroid


title: CellLine_RAMOS-2G6-4C10

description: Sanger cell line

value: blood


title: CellLine_QIMR-WIL

description: Sanger cell line

source_name: QIMR-WIL

value: QIMR-WIL


title: CellLine_QGP-1

description: Sanger cell line

value: pancreas


title: CellLine_RKN

description: Sanger cell line

source_name: RKN

value: RKN

value: ovary


title: CellLine_PWR-1E

description: Sanger cell line

value: prostate


title: CellLine_RCC10RGB

description: Sanger cell line


title: CellLine_PSN1

description: Sanger cell line


title: CellLine_RERF-LC-FM

description: Sanger cell line

source_name: RERF-LC-FM

value: RERF-LC-FM

value: lung


title: CellLine_PL18

description: Sanger cell line


title: CellLine_PL4

description: Sanger cell line


title: CellLine_PF-382

description: Sanger cell line


title: CellLine_PFSK-1

description: Sanger cell line

value: medulloblastoma


title: CellLine_PL-21

description: Sanger cell line


title: CellLine_PEO1

description: Sanger cell line


title: CellLine_PCI-4B

description: Sanger cell line

value: head and neck


title: CellLine_RERF-LC-MS

description: Sanger cell line

source_name: RERF-LC-MS

value: RERF-LC-MS


title: CellLine_PCI-30

description: Sanger cell line


title: CellLine_PCI-38

description: Sanger cell line


title: CellLine_PCI-15A

description: Sanger cell line


title: CellLine_PE-CA-PJ15

description: Sanger cell line


title: CellLine_PC-3_JPC-3

description: Sanger cell line


title: CellLine_PA-TU-8902

description: Sanger cell line


title: CellLine_PC-3

description: Sanger cell line


title: CellLine_PC-14

description: Sanger cell line


title: CellLine_RAJI

description: Sanger cell line

source_name: RAJI

value: RAJI


title: CellLine_PANC-10-05

description: Sanger cell line


title: CellLine_PCI-6A

description: Sanger cell line


title: CellLine_PANC-08-13

description: Sanger cell line


title: CellLine_P30-OHK

description: Sanger cell line


title: CellLine_P32-ISH

description: Sanger cell line


title: CellLine_PA-TU-8988T

description: Sanger cell line


title: CellLine_PA-1

description: Sanger cell line


title: CellLine_PANC-03-27

description: Sanger cell line


title: CellLine_PANC-04-03

description: Sanger cell line


title: CellLine_P12-ICHIKAWA

description: Sanger cell line


title: CellLine_PANC-02-03

description: Sanger cell line


title: CellLine_OVTOKO

description: Sanger cell line

source_name: OVTOKO

value: OVTOKO


title: CellLine_OVKATE

description: Sanger cell line

source_name: OVKATE

value: OVKATE


title: CellLine_OVK-18

description: Sanger cell line


title: CellLine_OVISE

description: Sanger cell line

source_name: OVISE

value: OVISE


title: CellLine_OVCAR-5

description: Sanger cell line


title: CellLine_OVCA433

description: Sanger cell line


title: CellLine_OVCAR-3

description: Sanger cell line


title: CellLine_OVCAR-4

description: Sanger cell line


title: CellLine_OV-7

description: Sanger cell line


title: CellLine_OVCAR-8

description: Sanger cell line


title: CellLine_OV-90

description: Sanger cell line


title: CellLine_ONS-76

description: Sanger cell line


title: CellLine_OS-RC-2

description: Sanger cell line

value: kidney


title: CellLine_OSC-19

description: Sanger cell line


title: CellLine_OV-17R

description: Sanger cell line


title: CellLine_P31-FUJ

description: Sanger cell line


title: CellLine_OE19

description: Sanger cell line

value: oesophagus


title: CellLine_OPM-2

description: Sanger cell line

value: blood

value: myeloma


title: CellLine_OE21

description: Sanger cell line


title: CellLine_OCUB-M

description: Sanger cell line

source_name: OCUB-M

value: OCUB-M

value: breast


title: CellLine_OV-56

description: Sanger cell line

value: ovary


title: CellLine_OE33

description: Sanger cell line


title: CellLine_OCI-M1

description: Sanger cell line


title: CellLine_OSC-20

description: Sanger cell line


title: CellLine_OCI-LY-19

description: Sanger cell line


title: CellLine_OCUM-1

description: Sanger cell line

value: stomach


title: CellLine_OVMIU

description: Sanger cell line

source_name: OVMIU

value: OVMIU


title: CellLine_OCI-AML3

description: Sanger cell line


title: CellLine_OC-314

description: Sanger cell line


title: CellLine_OAW-42

description: Sanger cell line


title: CellLine_OAW-28

description: Sanger cell line


title: CellLine_OVCA420

description: Sanger cell line


title: CellLine_OACP4C

description: Sanger cell line


title: CellLine_NY

description: Sanger cell line

source_name: NY

value: NY

value: bone

value: osteosarcoma


title: CellLine_OACM5-1

description: Sanger cell line


title: CellLine_NUGC-3

description: Sanger cell line


title: CellLine_OCI-AML2

description: Sanger cell line


title: CellLine_NU-DUL-1

description: Sanger cell line


title: CellLine_NOS-1

description: Sanger cell line


title: CellLine_NTERA-S-CL-D1

description: Sanger cell line

value: testis


title: CellLine_NOMO-1

description: Sanger cell line


title: CellLine_NUGC-4

description: Sanger cell line


title: CellLine_OMC-1

description: Sanger cell line

value: cervix


title: CellLine_NO-11

description: Sanger cell line

value: glioma


title: CellLine_NKM-1

description: Sanger cell line


title: CellLine_NH-12

description: Sanger cell line

value: neuroblastoma


title: CellLine_NEC8

description: Sanger cell line


title: CellLine_NK-92MI

description: Sanger cell line

value: lymphoid_neoplasm other


title: CellLine_OCI-AML5

description: Sanger cell line


title: CellLine_NO-10

description: Sanger cell line


title: CellLine_NCI-SNU-16

description: Sanger cell line


title: CellLine_NCI-H929

description: Sanger cell line


title: CellLine_NCI-H847

description: Sanger cell line

value: lung


title: CellLine_NCI-SNU-5

description: Sanger cell line


title: CellLine_NCI-SNU-1

description: Sanger cell line


title: CellLine_NCI-N87

description: Sanger cell line


title: CellLine_NCI-H838

description: Sanger cell line


title: CellLine_NCI-H835

description: Sanger cell line


title: CellLine_NCI-H841

description: Sanger cell line


title: CellLine_NCI-H82

description: Sanger cell line


title: CellLine_NCI-H810

description: Sanger cell line

value: lung_NSCLC_large cell


title: CellLine_NCI-H740

description: Sanger cell line


title: CellLine_NCI-H748

description: Sanger cell line


title: CellLine_NCI-H747

description: Sanger cell line


title: CellLine_NCI-H727

description: Sanger cell line


title: CellLine_NCI-H660

description: Sanger cell line

value: prostate


title: CellLine_NCI-H720

description: Sanger cell line


title: CellLine_NCI-H661

description: Sanger cell line


title: CellLine_NCI-H69

description: Sanger cell line


title: CellLine_NCI-H64

description: Sanger cell line


title: CellLine_NMC-G1

description: Sanger cell line


title: CellLine_NCI-H647

description: Sanger cell line

value: lung_NSCLC_not specified


title: CellLine_NCI-H650

description: Sanger cell line


title: CellLine_NCI-H524

description: Sanger cell line


title: CellLine_NCI-H520

description: Sanger cell line


title: CellLine_NCI-H596

description: Sanger cell line


title: CellLine_NCI-H522

description: Sanger cell line


title: CellLine_NCI-H510A

description: Sanger cell line


title: CellLine_NCI-H630

description: Sanger cell line


title: CellLine_NCI-H526

description: Sanger cell line


title: CellLine_NCI-H378

description: Sanger cell line


title: CellLine_NCI-H358

description: Sanger cell line


title: CellLine_NCI-H446

description: Sanger cell line


title: CellLine_NCI-H345

description: Sanger cell line


title: CellLine_NCI-H441

description: Sanger cell line


title: CellLine_NCI-H3122

description: Sanger cell line


title: CellLine_NCI-H292

description: Sanger cell line


title: CellLine_NCI-H322M

description: Sanger cell line


title: CellLine_NCI-H28

description: Sanger cell line

value: mesothelioma


title: CellLine_NCI-H716

description: Sanger cell line


title: CellLine_NCI-H2452

description: Sanger cell line


title: CellLine_NCI-H250

description: Sanger cell line


title: CellLine_NCI-H2291

description: Sanger cell line


title: CellLine_NCI-H2347

description: Sanger cell line


title: CellLine_NCI-H2342

description: Sanger cell line


title: CellLine_NCI-H2405

description: Sanger cell line


title: CellLine_NCI-H226

description: Sanger cell line


title: CellLine_NCI-H2444

description: Sanger cell line


title: CellLine_NCI-H23

description: Sanger cell line


title: CellLine_NCI-H2172

description: Sanger cell line


title: CellLine_NCI-H2196

description: Sanger cell line


title: CellLine_NCI-H508

description: Sanger cell line


title: CellLine_NCI-H2171

description: Sanger cell line


title: CellLine_NCI-H2227

description: Sanger cell line


title: CellLine_NCI-H2228

description: Sanger cell line


title: CellLine_NCI-H2126

description: Sanger cell line


title: CellLine_NCI-H2170

description: Sanger cell line


title: CellLine_NCI-H2141

description: Sanger cell line


title: CellLine_NCI-H211

description: Sanger cell line


title: CellLine_NCI-H2110

description: Sanger cell line


title: CellLine_NCI-H2122

description: Sanger cell line


title: CellLine_NCI-H209

description: Sanger cell line


title: CellLine_NCI-H2135

description: Sanger cell line


title: CellLine_NCI-H2066

description: Sanger cell line


title: CellLine_NCI-H2030

description: Sanger cell line


title: CellLine_NCI-H2087

description: Sanger cell line


title: CellLine_NCI-H2085

description: Sanger cell line


title: CellLine_NCI-H2081

description: Sanger cell line


title: CellLine_NCI-H2052

description: Sanger cell line


title: CellLine_NCI-H2029

description: Sanger cell line


title: CellLine_NCI-H1963

description: Sanger cell line


title: CellLine_NCI-H2009

description: Sanger cell line


title: CellLine_NCI-H196

description: Sanger cell line


title: CellLine_NCI-H1975

description: Sanger cell line


title: CellLine_NCI-H1993

description: Sanger cell line


title: CellLine_NCI-H2023

description: Sanger cell line


title: CellLine_NCI-H1876

description: Sanger cell line


title: CellLine_NCI-H1944

description: Sanger cell line


title: CellLine_NCI-H187

description: Sanger cell line


title: CellLine_NCI-H1869

description: Sanger cell line


title: CellLine_NCI-H1836

description: Sanger cell line


title: CellLine_NCI-H1838

description: Sanger cell line


title: CellLine_NCI-H1915

description: Sanger cell line


title: CellLine_NCI-H1688

description: Sanger cell line


title: CellLine_NCI-H1693

description: Sanger cell line


title: CellLine_NCI-H1651

description: Sanger cell line


title: CellLine_NCI-H1770

description: Sanger cell line


title: CellLine_NCI-H1650

description: Sanger cell line


title: CellLine_NCI-H1694

description: Sanger cell line


title: CellLine_NCI-H1734

description: Sanger cell line


title: CellLine_NCI-H1755

description: Sanger cell line


title: CellLine_NCI-H1792

description: Sanger cell line


title: CellLine_NCI-H1793

description: Sanger cell line


title: CellLine_NCI-H1623

description: Sanger cell line


title: CellLine_NCI-H1581

description: Sanger cell line


title: CellLine_NCI-H1573

description: Sanger cell line


title: CellLine_NCI-H1703

description: Sanger cell line


title: CellLine_NCI-H1781

description: Sanger cell line


title: CellLine_NCI-H146

description: Sanger cell line


title: CellLine_NCI-H1435

description: Sanger cell line


title: CellLine_NCI-H1355

description: Sanger cell line


title: CellLine_NCI-H1417

description: Sanger cell line


title: CellLine_NCI-H1304

description: Sanger cell line


title: CellLine_NCI-H1436

description: Sanger cell line


title: CellLine_NCI-H1299

description: Sanger cell line


title: CellLine_NCI-H1092

description: Sanger cell line


title: CellLine_NCI-H1155

description: Sanger cell line


title: CellLine_NCI-H1563

description: Sanger cell line


title: CellLine_NCC010

description: Sanger cell line

value: kidney


title: CellLine_NCI-H1437

description: Sanger cell line


title: CellLine_NCI-H1395

description: Sanger cell line


title: CellLine_NCI-H1341

description: Sanger cell line


title: CellLine_NBSUSSR

description: Sanger cell line

source_name: NBSUSSR

value: NBSUSSR


title: CellLine_NCCIT

description: Sanger cell line

source_name: NCCIT

value: NCCIT


title: CellLine_NCC021

description: Sanger cell line


title: CellLine_NB6

description: Sanger cell line


title: CellLine_NB69

description: Sanger cell line


title: CellLine_NB4

description: Sanger cell line

value: blood


title: CellLine_NCI-H1648

description: Sanger cell line


title: CellLine_NB5

description: Sanger cell line


title: CellLine_NCI-H1105

description: Sanger cell line


title: CellLine_NCI-H1666

description: Sanger cell line


title: CellLine_NB7

description: Sanger cell line


title: CellLine_NCI-H1568

description: Sanger cell line


title: CellLine_NCI-H128

description: Sanger cell line


title: CellLine_NCI-H1048

description: Sanger cell line


title: CellLine_NB14

description: Sanger cell line


title: CellLine_NB13

description: Sanger cell line


title: CellLine_NB17

description: Sanger cell line


title: CellLine_NB12

description: Sanger cell line


title: CellLine_NB10

description: Sanger cell line


title: CellLine_NB(TU)1-10

description: Sanger cell line


title: CellLine_MZ2-MEL

description: Sanger cell line

value: skin

value: melanoma


title: CellLine_MZ7-MEL

description: Sanger cell line


title: CellLine_NALM-6

description: Sanger cell line


title: CellLine_NAMALWA

description: Sanger cell line

source_name: NAMALWA

value: NAMALWA


title: CellLine_MRK-NU-1

description: Sanger cell line

value: breast


title: CellLine_MS751

description: Sanger cell line

value: cervix


title: CellLine_MONO-MAC-6

description: Sanger cell line


title: CellLine_MPP-89

description: Sanger cell line


title: CellLine_MS-1

description: Sanger cell line


title: CellLine_MSTO-211H

description: Sanger cell line


title: CellLine_MV-4-11

description: Sanger cell line

value: leukemia


title: CellLine_MOLT-13

description: Sanger cell line


title: CellLine_MOLM-13

description: Sanger cell line


title: CellLine_MY-M12

description: Sanger cell line


title: CellLine_MOLT-4

description: Sanger cell line


title: CellLine_MOLP-8

description: Sanger cell line

value: myeloma


title: CellLine_MO-T

description: Sanger cell line

source_name: MO-T

value: MO-T


title: CellLine_MOG-G-UVW

description: Sanger cell line

source_name: MOG-G-UVW

value: MOG-G-UVW

value: glioma


title: CellLine_MOG-G-CCM

description: Sanger cell line

source_name: MOG-G-CCM

value: MOG-G-CCM


title: CellLine_NB1

description: Sanger cell line

value: neuroblastoma


title: CellLine_MN-60

description: Sanger cell line


title: CellLine_MMAC-SF

description: Sanger cell line

source_name: MMAC-SF

value: MMAC-SF


title: CellLine_MM1S

description: Sanger cell line


title: CellLine_MZ1-PC

description: Sanger cell line

value: pancreas


title: CellLine_MO

description: Sanger cell line

source_name: MO

value: MO


title: CellLine_ML-1

description: Sanger cell line

value: thyroid


title: CellLine_ML-2

description: Sanger cell line

value: blood


title: CellLine_MKN7

description: Sanger cell line

value: stomach


title: CellLine_MKN28

description: Sanger cell line


title: CellLine_MKN1

description: Sanger cell line


title: CellLine_MOLT-16

description: Sanger cell line


title: CellLine_MINO

description: Sanger cell line

source_name: MINO

value: MINO


title: CellLine_MIA-PACA-2

description: Sanger cell line


title: CellLine_MKN45

description: Sanger cell line


title: CellLine_MHH-PREB-1

description: Sanger cell line


title: CellLine_MHH-ES-1

description: Sanger cell line

value: bone


title: CellLine_MHH-CALL-2

description: Sanger cell line


title: CellLine_MFM-223

description: Sanger cell line

value: breast


title: CellLine_MG-63

description: Sanger cell line

value: osteosarcoma


title: CellLine_MFH-INO

description: Sanger cell line

source_name: MFH-INO

value: MFH-INO


title: CellLine_MHH-CALL-4

description: Sanger cell line


title: CellLine_MFE-296

description: Sanger cell line

value: endometrium


title: CellLine_MHH-NB-11

description: Sanger cell line


title: CellLine_MFE-280

description: Sanger cell line


title: CellLine_MEWO

description: Sanger cell line

source_name: MEWO

value: MEWO

value: skin

value: melanoma


title: CellLine_MFE-319

description: Sanger cell line


title: CellLine_MES-SA

description: Sanger cell line

source_name: MES-SA

value: MES-SA

value: uterus


title: CellLine_MLMA

description: Sanger cell line

source_name: MLMA

value: MLMA


title: CellLine_MONO-MAC-1

description: Sanger cell line


title: CellLine_MEL-JUSO

description: Sanger cell line

source_name: MEL-JUSO

value: MEL-JUSO


title: CellLine_MEL-HO

description: Sanger cell line

source_name: MEL-HO

value: MEL-HO


title: CellLine_MEC-2

description: Sanger cell line


title: CellLine_MEC-1

description: Sanger cell line


title: CellLine_ME-180

description: Sanger cell line

value: cervix


title: CellLine_MDST8

description: Sanger cell line


title: CellLine_ME-1

description: Sanger cell line

value: blood


title: CellLine_MDA-MB-453

description: Sanger cell line


title: CellLine_MDA-MB-468

description: Sanger cell line


title: CellLine_MDA-MB-435

description: Sanger cell line


title: CellLine_MDA-MB-330

description: Sanger cell line


title: CellLine_MC-IXC

description: Sanger cell line

source_name: MC-IXC

value: MC-IXC

value: neuroblastoma


title: CellLine_MDA-MB-134-VI

description: Sanger cell line


title: CellLine_MCF7

description: Sanger cell line


title: CellLine_MDA-MB-231

description: Sanger cell line


title: CellLine_MC116

description: Sanger cell line


title: CellLine_MALME-3M

description: Sanger cell line


title: CellLine_M059J

description: Sanger cell line

value: glioma


title: CellLine_M059K

description: Sanger cell line


title: CellLine_LXF-289

description: Sanger cell line

value: lung


title: CellLine_LU-99A

description: Sanger cell line

value: lung_NSCLC_large cell


title: CellLine_LU-65

description: Sanger cell line


title: CellLine_LU-139

description: Sanger cell line


title: CellLine_LU-165

description: Sanger cell line


title: CellLine_MEG-01

description: Sanger cell line


title: CellLine_LU-134-A

description: Sanger cell line


title: CellLine_LS-513

description: Sanger cell line


title: CellLine_LU-135

description: Sanger cell line


title: CellLine_MDA-MB-415

description: Sanger cell line

value: breast


title: CellLine_MDA-MB-361

description: Sanger cell line


title: CellLine_LS-1034

description: Sanger cell line


title: CellLine_MDA-MB-436

description: Sanger cell line


title: CellLine_LS-123

description: Sanger cell line


title: CellLine_LS-411N

description: Sanger cell line


title: CellLine_LOVO

description: Sanger cell line

source_name: LOVO

value: LOVO


title: CellLine_LOXIMVI

description: Sanger cell line

source_name: LOXIMVI

value: LOXIMVI


title: CellLine_LOUCY

description: Sanger cell line

source_name: LOUCY

value: LOUCY


title: CellLine_LNZTA3WT4

description: Sanger cell line


title: CellLine_LN-229

description: Sanger cell line


title: CellLine_M14

description: Sanger cell line

value: skin

value: melanoma


title: CellLine_LOU-NH91

description: Sanger cell line


title: CellLine_LNCAP-CLONE-FGC

description: Sanger cell line

source_name: LNCAP-CLONE-FGC

value: LNCAP-CLONE-FGC

value: prostate


title: CellLine_LN-18

description: Sanger cell line


title: CellLine_MC-CAR

description: Sanger cell line

source_name: MC-CAR

value: MC-CAR

value: haematopoietic_neoplasm other


title: CellLine_LCLC-97TM1

description: Sanger cell line


title: CellLine_LCLC-103H

description: Sanger cell line


title: CellLine_LC-1F

description: Sanger cell line


title: CellLine_LC-1-SQ

description: Sanger cell line


title: CellLine_LC4-1

description: Sanger cell line


title: CellLine_LC-2-AD

description: Sanger cell line


title: CellLine_LB996-RCC

description: Sanger cell line

value: kidney


title: CellLine_LB771-HNC

description: Sanger cell line

value: head and neck


title: CellLine_LS-180

description: Sanger cell line


title: CellLine_LP-1

description: Sanger cell line

value: blood

value: myeloma


title: CellLine_LB647-SCLC

description: Sanger cell line


title: CellLine_LAN-6

description: Sanger cell line

value: neuroblastoma


title: CellLine_LB2518-MEL

description: Sanger cell line


title: CellLine_LB1047-RCC

description: Sanger cell line


title: CellLine_LB373-MEL-D

description: Sanger cell line


title: CellLine_LB2241-RCC

description: Sanger cell line


title: CellLine_MDA-MB-157

description: Sanger cell line


title: CellLine_LN-405

description: Sanger cell line

value: glioma


title: CellLine_LAMA-84

description: Sanger cell line


title: CellLine_KYSE-70

description: Sanger cell line

value: oesophagus


title: CellLine_KYSE-520

description: Sanger cell line


title: CellLine_LK-2

description: Sanger cell line

value: lung


title: CellLine_L-540

description: Sanger cell line


title: CellLine_KYSE-50

description: Sanger cell line


title: CellLine_KYSE-510

description: Sanger cell line


title: CellLine_L-363

description: Sanger cell line


title: CellLine_L-1236

description: Sanger cell line


title: CellLine_KYSE-450

description: Sanger cell line


title: CellLine_KYSE-410

description: Sanger cell line


title: CellLine_KYSE-270

description: Sanger cell line


title: CellLine_KYSE-220

description: Sanger cell line


title: CellLine_KYSE-180

description: Sanger cell line


title: CellLine_KY821

description: Sanger cell line

value: leukemia


title: CellLine_KYSE-150

description: Sanger cell line


title: CellLine_KURAMOCHI

description: Sanger cell line

source_name: KURAMOCHI

value: KURAMOCHI

value: ovary


title: CellLine_KYM-1

description: Sanger cell line

value: rhabdomyosarcoma


title: CellLine_KYAE-1

description: Sanger cell line


title: CellLine_KYSE-140

description: Sanger cell line


title: CellLine_KU812

description: Sanger cell line


title: CellLine_KU-19-19

description: Sanger cell line

value: bladder


title: CellLine_KS-1

description: Sanger cell line


title: CellLine_KP-N-YN

description: Sanger cell line

source_name: KP-N-YN

value: KP-N-YN


title: CellLine_KP-N-RT-BM-1

description: Sanger cell line


title: CellLine_KP-N-SI9S

description: Sanger cell line


title: CellLine_L-428

description: Sanger cell line


title: CellLine_KP-4

description: Sanger cell line

value: pancreas


title: CellLine_LB831-BLC

description: Sanger cell line


title: CellLine_KP-1N

description: Sanger cell line


title: CellLine_KOSC-2

description: Sanger cell line


title: CellLine_KON

description: Sanger cell line

source_name: KON

value: KON


title: CellLine_KO52

description: Sanger cell line


title: CellLine_KOPN-8

description: Sanger cell line


title: CellLine_KNS-81-FD

description: Sanger cell line


title: CellLine_KNS-42

description: Sanger cell line


title: CellLine_KMS-12-BM

description: Sanger cell line


title: CellLine_KMOE-2

description: Sanger cell line


title: CellLine_KMRC-20

description: Sanger cell line


title: CellLine_KMRC-1

description: Sanger cell line


title: CellLine_KM-H2

description: Sanger cell line


title: CellLine_KINGS-1

description: Sanger cell line


title: CellLine_KLE

description: Sanger cell line

source_name: KLE

value: KLE

value: endometrium


title: CellLine_KMH-2

description: Sanger cell line

value: thyroid


title: CellLine_KM12

description: Sanger cell line


title: CellLine_KGN

description: Sanger cell line

source_name: KGN

value: KGN


title: CellLine_KG-1

description: Sanger cell line

value: blood


title: CellLine_KP-N-YS

description: Sanger cell line

source_name: KP-N-YS

value: KP-N-YS

value: neuroblastoma


title: CellLine_KE-37

description: Sanger cell line


title: CellLine_KCL-22

description: Sanger cell line


title: CellLine_KATOIII

description: Sanger cell line

source_name: KATOIII

value: KATOIII

value: stomach


title: CellLine_KP-3

description: Sanger cell line


title: CellLine_KARPAS-620

description: Sanger cell line

value: haematopoietic_neoplasm other


title: CellLine_KARPAS-299

description: Sanger cell line


title: CellLine_KELLY

description: Sanger cell line

source_name: KELLY

value: KELLY


title: CellLine_KARPAS-45

description: Sanger cell line


title: CellLine_KASUMI-1

description: Sanger cell line


title: CellLine_KARPAS-422

description: Sanger cell line


title: CellLine_KARPAS-1106P

description: Sanger cell line


title: CellLine_K-562

description: Sanger cell line


title: CellLine_KNS-62

description: Sanger cell line

value: lung


title: CellLine_K5

description: Sanger cell line


title: CellLine_KALS-1

description: Sanger cell line

value: glioma


title: CellLine_KARPAS-231

description: Sanger cell line


title: CellLine_JVM-3

description: Sanger cell line

value: lymphoid_neoplasm other


title: CellLine_JVM-2

description: Sanger cell line


title: CellLine_JURKAT

description: Sanger cell line

source_name: JURKAT

value: JURKAT


title: CellLine_JSC-1

description: Sanger cell line


title: CellLine_JURL-MK1

description: Sanger cell line


title: CellLine_J-RT3-T3-5

description: Sanger cell line


title: CellLine_JIYOYEP-2003

description: Sanger cell line


title: CellLine_JJN-3

description: Sanger cell line


title: CellLine_JHOS-4

description: Sanger cell line

value: ovary


title: CellLine_JHOS-3

description: Sanger cell line


title: CellLine_JM1

description: Sanger cell line


title: CellLine_JHU-022

description: Sanger cell line

value: head and neck


title: CellLine_JHU-011

description: Sanger cell line


title: CellLine_K052

description: Sanger cell line


title: CellLine_JHH-2

description: Sanger cell line

value: liver


title: CellLine_JHH-7

description: Sanger cell line


title: CellLine_JHH-6

description: Sanger cell line


title: CellLine_J82

description: Sanger cell line

value: bladder


title: CellLine_JEKO-1

description: Sanger cell line


title: CellLine_IST-SL1

description: Sanger cell line


title: CellLine_IST-MES1

description: Sanger cell line

value: mesothelioma


title: CellLine_IST-MEL1

description: Sanger cell line

value: skin

value: melanoma


title: CellLine_JEG-3

description: Sanger cell line


title: CellLine_JAR

description: Sanger cell line

source_name: JAR

value: JAR


title: CellLine_JHOS-2

description: Sanger cell line


title: CellLine_JHH-4

description: Sanger cell line


title: CellLine_IOSE-523(-)

description: Sanger cell line


title: CellLine_JHH-1

description: Sanger cell line


title: CellLine_ISHIKAWA

description: Sanger cell line

source_name: ISHIKAWA

value: ISHIKAWA

value: endometrium


title: CellLine_IOSE-75-16SV40

description: Sanger cell line


title: CellLine_IPC-298

description: Sanger cell line


title: CellLine_IMR-5

description: Sanger cell line

value: neuroblastoma


title: CellLine_IMR-32

description: Sanger cell line


title: CellLine_IOSE-364(-)

description: Sanger cell line


title: CellLine_IM-9

description: Sanger cell line

value: blood

value: myeloma


title: CellLine_IOSE-397

description: Sanger cell line


title: CellLine_IM-95

description: Sanger cell line

value: stomach


title: CellLine_IHH-4

description: Sanger cell line

value: thyroid


title: CellLine_IGROV-1

description: Sanger cell line


title: CellLine_IGR39

description: Sanger cell line


title: CellLine_IGR-37

description: Sanger cell line


title: CellLine_IST-SL2

description: Sanger cell line

value: lung


title: CellLine_IGR-1

description: Sanger cell line


title: CellLine_I-9-2

description: Sanger cell line


title: CellLine_HUO9

description: Sanger cell line

value: bone

value: osteosarcoma


title: CellLine_HUH-1

description: Sanger cell line


title: CellLine_HUCCT1

description: Sanger cell line


title: CellLine_IA-LM

description: Sanger cell line

source_name: IA-LM

value: IA-LM

value: lung_NSCLC_large cell


title: CellLine_HT-3

description: Sanger cell line

value: cervix


title: CellLine_HT-144

description: Sanger cell line


title: CellLine_HUP-T4

description: Sanger cell line

value: pancreas


title: CellLine_HUH-7

description: Sanger cell line

value: liver


title: CellLine_HT-1197

description: Sanger cell line

value: bladder


title: CellLine_HUO-3N1

description: Sanger cell line


title: CellLine_HUP-T3

description: Sanger cell line


title: CellLine_HT55

description: Sanger cell line


title: CellLine_HT-1376

description: Sanger cell line


title: CellLine_HT-29

description: Sanger cell line


title: CellLine_HT-1080

description: Sanger cell line

value: fibrosarcoma


title: CellLine_HSC-4

description: Sanger cell line

value: head and neck


title: CellLine_HT-115

description: Sanger cell line


title: CellLine_HT

description: Sanger cell line

source_name: HT

value: HT


title: CellLine_HSC-39

description: Sanger cell line


title: CellLine_HUTU-80

description: Sanger cell line


title: CellLine_HSC-2

description: Sanger cell line


title: CellLine_HSC-3

description: Sanger cell line


title: CellLine_HS-944-T

description: Sanger cell line

value: skin

value: melanoma


title: CellLine_HTC-C3

description: Sanger cell line


title: CellLine_HS-940-T

description: Sanger cell line


title: CellLine_Hs-939-T

description: Sanger cell line


title: CellLine_HS-633T

description: Sanger cell line


title: CellLine_HS-578-T

description: Sanger cell line

value: breast


title: CellLine_HS-766T

description: Sanger cell line


title: CellLine_HOS

description: Sanger cell line

source_name: HOS

value: HOS


title: CellLine_HPAF-II

description: Sanger cell line

source_name: HPAF-II

value: HPAF-II


title: CellLine_HS746T

description: Sanger cell line

value: stomach


title: CellLine_HS-445

description: Sanger cell line

value: blood


title: CellLine_HS-683

description: Sanger cell line

value: glioma


title: CellLine_HO-1-N-1

description: Sanger cell line


title: CellLine_HOP-92

description: Sanger cell line

value: lung


title: CellLine_HN

description: Sanger cell line

source_name: HN

value: HN


title: 5 µM 4-OHT-treated 3D-retinas with 400 µM vitamin E

city: Kobe

first: Shin-ichiro

last: Ito

address: 2-2-3 Minatojima-minamimachi, Chuou-ku

country: Japan

institute: RIKEN Center for Developmental Biology

hyb_protocol: Arrays were hybridized on SurePrint G3 Mouse 8x60K microarrays for 17 hours at 65 degrees Celsius using Gene Expression Hybridization Kit (Agilent Technologies). Slides were washed with Gene Expression Wash Buffer (Agilent Technologies).

scan_protocol: Slides were scanned using Agilent Technologies Microarray Scanner.

data_processing: Data were extracted using Agilent Feature Extraction Software (version 10.7.3.1) .

organism: Mus musculus

source_name: Mouse iPS cells-derived 3D retinas, 5 µM 4-OHT + 400 µM vitamin E, DD 25, replicate 1

label_protocol: 50 ng RNA was used to label cRNA with Cyanine-3 (Cy3) using Low Input Quick Amp Labeling Kit (Agilent Technologies). The labeled cRNA was purified using RNAeasy mini spin columns (QIAGEN). Amplification and labeling efficiency of cRNA were checked with the NanoDrop 1000 (Thermo Fisher Scientific).

growth_protocol: Mouse Nrl-GFP iPSCs were established and maintained as previously described, and differentiated into optic-cup-like structures (optic cups) using a modified serum-free floating culture of embryoid-body-like aggregates with quick reaggregation (SFEBq).

extract_protocol: Total RNA was extracted using an RNeasy mini kit (Qiagen) according to a protocol recommended by the manufacturer.

treatment_protocol: On differentiation day (DD) 23, optic cups with bright GFP fluorescence (3D-retinas) were collected with tweezers, and each 3D-retina was treated with ethanol (vehicle) or 4-OHT. These 3D-retinas were collected on DD 25 when the GFP intensity stopped increasing, meaning  start of degeneration of photoreceptor cells.

tag: differetion day

value: DD 25

value: Retina


title: CellLine_HPAC

description: Sanger cell line

source_name: HPAC

value: HPAC

value: pancreas


title: Vehicle control- vs 5 µM 4-OHT-treated 3D-retinas

data_processing: Agilent Feature Extraction Software (version 10.7.3.1) was used for background subtraction and LOWESS normalization.

source_name: Mouse iPS cells-derived 3D retinas, 5 µM 4-OHT, DD 26, replicate 1

label_protocol: 50 ng RNA was used to label cRNA using Low Input Quick Amp Labeling Kit (Agilent Technologies). The labeled cRNA was purified using RNAeasy mini spin columns (QIAGEN). Amplification and labeling efficiency of cRNA were checked with the NanoDrop 1000 (Thermo Fisher Scientific).

treatment_protocol: On differentiation day (DD) 23, optic cups with bright GFP fluorescence (3D-retinas) were collected with tweezers, and each 3D-retina was treated with ethanol (vehicle control) or 4-OHT. These 3D-retinas were collected on DD 26 when the GFP intensity decreased, meaning  degeneration of photoreceptor cells.

value: DD 26

source_name: Mouse iPS cells-derived 3D retinas, vehicle control, DD 26, replicate 1


title: CellLine_HO-1-U-1

description: Sanger cell line

value: head and neck


title: 5 µM 4-OHT-treated 3D-retinas

source_name: Mouse iPS cells-derived 3D retinas, 5 µM 4-OHT, DD 25, replicate 1


title: Vehicle control-treated 3D-retinas

source_name: Mouse iPS cells-derived 3D retinas, vehicle control, DD 25, replicate 1


title: CellLine_HMV-II

description: Sanger cell line

source_name: HMV-II

value: HMV-II


title: CellLine_HLE

description: Sanger cell line

source_name: HLE

value: HLE

value: liver


title: CellLine_HL-60

description: Sanger cell line


title: CellLine_HH

description: Sanger cell line

source_name: HH

value: HH


title: 5 µM 4-OHT-treated 3D-retinas with 200 nM lutein

source_name: Mouse iPS cells-derived 3D retinas, 5 µM 4-OHT + 200 nM lutein, DD 25, replicate 1


title: CellLine_HLF

description: Sanger cell line

source_name: HLF

value: HLF


title: CellLine_HGC-27

description: Sanger cell line


title: CellLine_Hey

description: Sanger cell line

source_name: Hey

value: Hey

value: ovary


title: CellLine_H-EMC-SS

description: Sanger cell line

source_name: H-EMC-SS

value: H-EMC-SS

value: bone

value: chondrosarcoma


title: CellLine_HELASF

description: Sanger cell line

source_name: HELASF

value: HELASF

value: cervix


title: CellLine_HELA

description: Sanger cell line

source_name: HELA

value: HELA


title: CellLine_HDQ-P1

description: Sanger cell line

value: breast


title: CellLine_HEL

description: Sanger cell line

source_name: HEL

value: HEL

value: blood


title: CellLine_HEC-1

description: Sanger cell line

value: endometrium


title: CellLine_HDLM-2

description: Sanger cell line


title: CellLine_HCT-15

description: Sanger cell line


title: CellLine_HCE-7

description: Sanger cell line

value: oesophagus


title: CellLine_HCC-827

description: Sanger cell line

value: lung


title: CellLine_HCC70

description: Sanger cell line


title: CellLine_HCE-T

description: Sanger cell line

source_name: HCE-T

value: HCE-T

value: head and neck


title: CellLine_HCC-78

description: Sanger cell line


title: CellLine_HCT-116

description: Sanger cell line


title: CellLine_HCE-4

description: Sanger cell line


title: CellLine_HCC-56

description: Sanger cell line


title: CellLine_HCC-44

description: Sanger cell line


title: CellLine_HCC-366

description: Sanger cell line

value: lung_NSCLC_not specified


title: CellLine_HCC38

description: Sanger cell line


title: CellLine_HEP_G2

description: Sanger cell line

value: liver


title: CellLine_HEP3B2-1-7

description: Sanger cell line


title: CellLine_HCC2218

description: Sanger cell line


title: CellLine_HCC1954

description: Sanger cell line


title: CellLine_HCC2998

description: Sanger cell line


title: CellLine_HCC1937

description: Sanger cell line


title: CellLine_HCC2157

description: Sanger cell line


title: CellLine_HCC1806

description: Sanger cell line


title: CellLine_HCC202

description: Sanger cell line


title: CellLine_HD-MY-Z

description: Sanger cell line

source_name: HD-MY-Z

value: HD-MY-Z


title: CellLine_HCC1569

description: Sanger cell line


title: CellLine_HCC1599

description: Sanger cell line


title: CellLine_HCC1500

description: Sanger cell line


title: CellLine_HCC1428

description: Sanger cell line


title: CellLine_HCC-15

description: Sanger cell line


title: CellLine_HCC1419

description: Sanger cell line


title: CellLine_HCC1143

description: Sanger cell line


title: CellLine_HAL-01

description: Sanger cell line


title: CellLine_HCC1395

description: Sanger cell line


title: CellLine_HCC1187

description: Sanger cell line


title: CellLine_H9

description: Sanger cell line

value: lymphoid_neoplasm other


title: CellLine_H513

description: Sanger cell line

value: mesothelioma


title: CellLine_HC-1

description: Sanger cell line


title: CellLine_H2869

description: Sanger cell line


title: CellLine_HARA

description: Sanger cell line

source_name: HARA

value: HARA


title: CellLine_H290

description: Sanger cell line


title: CellLine_H2810

description: Sanger cell line


title: CellLine_H2818

description: Sanger cell line


title: CellLine_H2804

description: Sanger cell line


title: CellLine_H2803

description: Sanger cell line


title: CellLine_HCC-33

description: Sanger cell line


title: CellLine_H2595

description: Sanger cell line


title: CellLine_H2795

description: Sanger cell line


title: CellLine_H3118

description: Sanger cell line


title: CellLine_H2722

description: Sanger cell line


title: CellLine_H2591

description: Sanger cell line


title: CellLine_H2373

description: Sanger cell line


title: CellLine_H2461

description: Sanger cell line


title: CellLine_H2369

description: Sanger cell line


title: CellLine_GR-ST

description: Sanger cell line

source_name: GR-ST

value: GR-ST


title: CellLine_GT3TKB

description: Sanger cell line

value: stomach


title: CellLine_HA7-RCC

description: Sanger cell line

value: kidney


title: CellLine_GRANTA-519

description: Sanger cell line


title: CellLine_H4

description: Sanger cell line

value: glioma


title: CellLine_GMS-10

description: Sanger cell line


title: CellLine_G-MEL

description: Sanger cell line

source_name: G-MEL

value: G-MEL

value: skin

value: melanoma


title: CellLine_GOTO

description: Sanger cell line

source_name: GOTO

value: GOTO

value: neuroblastoma


title: CellLine_GI-1

description: Sanger cell line


title: CellLine_GDM-1

description: Sanger cell line

value: blood


title: CellLine_GI-ME-N

description: Sanger cell line

source_name: GI-ME-N

value: GI-ME-N


title: CellLine_H3255

description: Sanger cell line

value: lung


title: CellLine_GCT

description: Sanger cell line

source_name: GCT

value: GCT


title: CellLine_GB-1

description: Sanger cell line


title: CellLine_GCIY

description: Sanger cell line

source_name: GCIY

value: GCIY


title: CellLine_GAMG

description: Sanger cell line

source_name: GAMG

value: GAMG


title: CellLine_H2731

description: Sanger cell line

value: mesothelioma


title: CellLine_GA-10

description: Sanger cell line


title: CellLine_GAK

description: Sanger cell line

source_name: GAK

value: GAK


title: CellLine_G-402

description: Sanger cell line


title: CellLine_GA-10-CLONE-4

description: Sanger cell line


title: CellLine_G-292-CLONE-A141B1

description: Sanger cell line

value: bone

value: osteosarcoma


title: CellLine_G-361

description: Sanger cell line


title: CellLine_G-401

description: Sanger cell line

value: kidney


title: CellLine_FU97

description: Sanger cell line

value: stomach


title: CellLine_FTC-133

description: Sanger cell line

value: thyroid


title: CellLine_FLO-1

description: Sanger cell line

value: oesophagus


title: CellLine_GP5D

description: Sanger cell line


title: CellLine_FARAGE

description: Sanger cell line

source_name: FARAGE

value: FARAGE


title: CellLine_EW-3

description: Sanger cell line


title: CellLine_EW-7

description: Sanger cell line


title: CellLine_FADU

description: Sanger cell line

source_name: FADU

value: FADU

value: head and neck


title: CellLine_EW-18

description: Sanger cell line


title: CellLine_EW-22

description: Sanger cell line


title: CellLine_EW-13

description: Sanger cell line


title: CellLine_EW-12

description: Sanger cell line


title: CellLine_EW-11

description: Sanger cell line


title: CellLine_EW-1

description: Sanger cell line


title: CellLine_EW-16

description: Sanger cell line


title: CellLine_EVSA-T

description: Sanger cell line

source_name: EVSA-T

value: EVSA-T

value: breast


title: CellLine_ETK-1

description: Sanger cell line


title: CellLine_ESS-1

description: Sanger cell line

value: endometrium


title: CellLine_ESO51

description: Sanger cell line


title: CellLine_ES8

description: Sanger cell line


title: CellLine_FU-OV-1

description: Sanger cell line

value: ovary


title: CellLine_ESO26

description: Sanger cell line


title: CellLine_ES5

description: Sanger cell line


title: CellLine_ES6

description: Sanger cell line


title: CellLine_ES4

description: Sanger cell line


title: CellLine_ES3

description: Sanger cell line


title: CellLine_ES-2

description: Sanger cell line


title: CellLine_ES1

description: Sanger cell line


title: CellLine_EPLC-272H

description: Sanger cell line

value: lung


title: CellLine_EOL-1-CELL

description: Sanger cell line

value: blood

value: haematopoietic_neoplasm other


title: CellLine_EMC-BAC-2

description: Sanger cell line


title: CellLine_EM-2

description: Sanger cell line


title: CellLine_EJM

description: Sanger cell line

source_name: EJM

value: EJM

value: lymphoid_neoplasm other


title: CellLine_EKVX

description: Sanger cell line

source_name: EKVX

value: EKVX


title: CellLine_EW-24

description: Sanger cell line

value: bone


title: CellLine_EHEB

description: Sanger cell line

source_name: EHEB

value: EHEB


title: CellLine_EGI-1

description: Sanger cell line


title: CellLine_EFO-27

description: Sanger cell line


title: CellLine_EFO-21

description: Sanger cell line


title: CellLine_EC-GI-10

description: Sanger cell line


title: CellLine_ES7

description: Sanger cell line


title: CellLine_ECC4

description: Sanger cell line


title: CellLine_ECC10

description: Sanger cell line

value: stomach


title: CellLine_ECC12

description: Sanger cell line


title: CellLine_EB-3

description: Sanger cell line


title: CellLine_EB2

description: Sanger cell line


title: CellLine_EN

description: Sanger cell line

source_name: EN

value: EN


title: CellLine_EMC-BAC-1

description: Sanger cell line


title: CellLine_DOHH-2

description: Sanger cell line


title: CellLine_DOK

description: Sanger cell line

source_name: DOK

value: DOK


title: CellLine_DSH1

description: Sanger cell line

value: bladder


title: CellLine_DOTC2-4510

description: Sanger cell line

value: cervix


title: CellLine_DND-41

description: Sanger cell line


title: CellLine_DU-145

description: Sanger cell line

value: prostate


title: CellLine_DMS-53

description: Sanger cell line


title: CellLine_DMS-273

description: Sanger cell line


title: CellLine_DK-MG

description: Sanger cell line

source_name: DK-MG

value: DK-MG

value: glioma


title: CellLine_DJM-1

description: Sanger cell line

value: skin


title: CellLine_DMS-79

description: Sanger cell line

value: lung


title: CellLine_EFM-192A

description: Sanger cell line

value: breast


title: CellLine_DG-75

description: Sanger cell line

value: blood


title: CellLine_DETROIT562

description: Sanger cell line

value: head and neck


title: CellLine_EFM-19

description: Sanger cell line


title: CellLine_DIFI

description: Sanger cell line

source_name: DIFI

value: DIFI


title: CellLine_EBC-1

description: Sanger cell line


title: CellLine_DBTRG-05MG

description: Sanger cell line


title: CellLine_DB

description: Sanger cell line

source_name: DB

value: DB


title: CellLine_DAUDI

description: Sanger cell line

source_name: DAUDI

value: DAUDI


title: CellLine_DAOY

description: Sanger cell line

source_name: DAOY

value: DAOY

value: medulloblastoma


title: CellLine_D-566MG

description: Sanger cell line


title: CellLine_DAN-G

description: Sanger cell line

source_name: DAN-G

value: DAN-G

value: pancreas


title: CellLine_DOV13

description: Sanger cell line

value: ovary


title: CellLine_D-542MG

description: Sanger cell line


title: CellLine_DU-4475

description: Sanger cell line


title: CellLine_D-392MG

description: Sanger cell line


title: CellLine_D-502MG

description: Sanger cell line


title: CellLine_D-336MG

description: Sanger cell line


title: CellLine_DMS-114

description: Sanger cell line


title: CellLine_D-423MG

description: Sanger cell line


title: CellLine_D-263MG

description: Sanger cell line


title: CellLine_D-283MED

description: Sanger cell line


title: CellLine_CW-2

description: Sanger cell line


title: CellLine_D-245MG

description: Sanger cell line


title: CellLine_CTV-1

description: Sanger cell line


title: CellLine_D-247MG

description: Sanger cell line


title: CellLine_CTB-1

description: Sanger cell line


title: CellLine_CRO-AP2

description: Sanger cell line


title: CellLine_DEL

description: Sanger cell line

source_name: DEL

value: DEL

value: lymphoid_neoplasm other


title: CellLine_CP66-MEL

description: Sanger cell line

value: melanoma


title: CellLine_CS1

description: Sanger cell line

value: bone


title: CellLine_CP50-MEL-B

description: Sanger cell line

value: skin


title: CellLine_CPC-N

description: Sanger cell line

source_name: CPC-N

value: CPC-N

value: lung


title: CellLine_CP67-MEL

description: Sanger cell line


title: CellLine_COR-L95

description: Sanger cell line


title: CellLine_COR-L88

description: Sanger cell line


title: CellLine_COR-L311

description: Sanger cell line


title: CellLine_COR-L32

description: Sanger cell line


title: CellLine_COR-L23

description: Sanger cell line

value: lung_NSCLC_large cell


title: CellLine_COR-L279

description: Sanger cell line


title: CellLine_COR-L303

description: Sanger cell line


title: CellLine_COLO-829

description: Sanger cell line


title: CellLine_COR-L105

description: Sanger cell line


title: CellLine_COLO-824

description: Sanger cell line

value: breast


title: CellLine_COLO-741

description: Sanger cell line


title: CellLine_COLO-800

description: Sanger cell line


title: CellLine_COLO-684

description: Sanger cell line

value: endometrium


title: CellLine_COLO-792

description: Sanger cell line


title: CellLine_COLO-679

description: Sanger cell line


title: CellLine_COLO-678

description: Sanger cell line


title: CellLine_COLO-680N

description: Sanger cell line

value: oesophagus


title: CellLine_COLO-320

description: Sanger cell line


title: CellLine_COLO-205

description: Sanger cell line


title: CellLine_COLO-668

description: Sanger cell line


title: CellLine_CL-40

description: Sanger cell line


title: CellLine_CL-11

description: Sanger cell line


title: CellLine_COR-L321

description: Sanger cell line


title: CellLine_CHSA8926

description: Sanger cell line

value: chondrosarcoma


title: CellLine_CHL-1

description: Sanger cell line


title: CellLine_CHP-212

description: Sanger cell line

value: neuroblastoma


title: CellLine_COLO-320-HSR

description: Sanger cell line


title: CellLine_CGTH-W-1

description: Sanger cell line

value: thyroid


title: CellLine_CHP-126

description: Sanger cell line


title: CellLine_CFPAC-1

description: Sanger cell line


title: CellLine_CHP-134

description: Sanger cell line


title: CellLine_CESS

description: Sanger cell line

source_name: CESS

value: CESS

value: blood


title: CellLine_CCRF-CEM

description: Sanger cell line

source_name: CCRF-CEM

value: CCRF-CEM


title: CellLine_CCK-81

description: Sanger cell line


title: CellLine_CA-SKI

description: Sanger cell line

source_name: CA-SKI

value: CA-SKI

value: cervix


title: CellLine_CAS-1

description: Sanger cell line

value: glioma


title: CellLine_CAR-1

description: Sanger cell line


title: CellLine_CAPAN-2

description: Sanger cell line

value: pancreas


title: CellLine_CAPAN-1

description: Sanger cell line


title: CellLine_CAOV-4

description: Sanger cell line

value: ovary


title: CellLine_CML-T1

description: Sanger cell line


title: CellLine_CAOV-3

description: Sanger cell line


title: CellLine_CALU-6

description: Sanger cell line


title: CellLine_CAL-78

description: Sanger cell line

value: bone


title: CellLine_CAMA-1

description: Sanger cell line


title: CellLine_CAL-85-1

description: Sanger cell line


title: CellLine_CALU-3

description: Sanger cell line

value: lung


title: CellLine_CAL-54

description: Sanger cell line

value: kidney


title: CellLine_CAL-62

description: Sanger cell line


title: CellLine_CHAGO-K-1

description: Sanger cell line

value: lung_NSCLC_not specified


title: CellLine_CAL-33

description: Sanger cell line

value: head and neck


title: CellLine_CAL-72

description: Sanger cell line

value: osteosarcoma


title: CellLine_CAL-51

description: Sanger cell line

value: breast


title: CellLine_CAL-27

description: Sanger cell line


title: CellLine_CAL-29

description: Sanger cell line

value: bladder


title: CellLine_CAL-148

description: Sanger cell line


title: CellLine_CAL-120

description: Sanger cell line


title: CellLine_CAL-12T

description: Sanger cell line


title: CellLine_CCF-STTG1

description: Sanger cell line


title: CellLine_CADO-ES1

description: Sanger cell line


title: CellLine_CA9-22

description: Sanger cell line


title: CellLine_CAKI-1

description: Sanger cell line


title: CellLine_CA46

description: Sanger cell line


title: CellLine_C8166

description: Sanger cell line


title: CellLine_C-4-I

description: Sanger cell line


title: CellLine_C32

description: Sanger cell line

value: skin

value: melanoma


title: CellLine_C3A

description: Sanger cell line

value: liver


title: CellLine_C-33-A

description: Sanger cell line


title: CellLine_BXPC-3

description: Sanger cell line


title: CellLine_C2BBE1

description: Sanger cell line