title: WDC010_WNVMT_MOI500_8h_3_RNA


title: WDC010_WNVE218A_MOI500_8h_1_RNA

status: Public on Nov 04 2015

type: RNA

city: Richland

first: Natalie

last: Heller

address: 902 Battelle Blvd.

country: USA

institute: PNNL

hyb_protocol: Hybridization was performed according to Agilent One-Color Microarray-Based Gene Expression Analysis Protocol (Agilent Technology). The labeled cRNAs were purified by RNeasy Mini Kit (Qiagen). The concentration and specific activity of the labeled cRNAs (pmol Cy3/μg cRNA) were measured by NanoDrop ND-1000. 1 μg of each labeled cRNA was fragmented by adding 11 μl 10 × Blocking Agent and 2.2 μl of 25×Fragmentation Buffer, then heated at 60 °C for 30 min, and finally 55 μl 2 × GE Hybridization buffer was added to dilute the labeled cRNA. 100μl of hybridization solution was dispensed into the gasket slide and assembled to the gene expression microarray slide. The slides were incubated for 17 hours at 65°C in an Agilent Hybridization Oven.

scan_protocol: The hybridized arrays were washed, fixed and scanned with using the Agilent DNA Microarray Scanner (part number G2505C).

data_processing: Scanned images were analyzed using Agilent Feature Extraction Software (v11.0.1.1). The limma package for R (available on Bioconductor) was used to perform background correction, quantile normalization (normalizeBetweenArrays), and summarization (avereps) to derive a single normalized intensity value per probe. Outlier samples were detected using PCA and by visual inspection of heatmaps, and all data was re-processed after removing outlier samples. All data processing for each of the biological replicates was performed independently of the other.

molecule: total RNA

organism: Mus musculus

label_protocol: Total RNA was labeled according to Agilent’s Quick Amp Labeling protocol as part of the Agilent One-Color Microarray-Based Gene Expression Analysis Protocol (Agilent Technology). Total RNA from each sample was linearly amplified and labeled with Cy3-UTP.

growth_protocol: WNV009.0P: Preparing myeloid dendritic cells

extract_protocol: WNV003.0P: Harvesting protocol for panomics of mDC

treatment_protocol: Cells were infected with a multiplicity of infection of 500.

tag: strain

tag: cell type

value: primary myeloid dendritic cell

tag: time (h post-infection)

tag: virus


title: WDC010_WNVMT_MOI500_1h_3_RNA

value: WNVMT


title: WDC010_mockulum_MOI500_24h_3_RNA

value: mockulum


title: WDC010_WNVE218A_MOI500_24h_1_RNA


title: WDC010_WNVMT_MOI500_1h_2_RNA


title: WDC010_mockulum_MOI500_24h_1_RNA


title: WDC010_WNVE218A_MOI500_8h_3_RNA


title: WDC010_WNVMT_MOI500_24h_3_RNA


title: WDC010_WNVE218A_MOI500_12h_1_RNA


title: WDC010_WNVMT_MOI500_24h_2_RNA


title: WDC010_mockulum_MOI500_1h_2_RNA


title: WDC010_mockulum_MOI500_12h_1_RNA


title: WDC010_mockulum_MOI500_1h_1_RNA


title: WDC010_WNVMT_MOI500_12h_2_RNA


title: WDC010_mockulum_MOI500_12h_2_RNA


title: WDC010_WNVE218A_MOI500_1h_2_RNA


title: WDC010_mockulum_MOI500_1h_3_RNA


title: WDC010_WNVMT_MOI500_8h_1_RNA


title: WDC010_WNVMT_MOI500_1h_1_RNA


title: WDC010_mockulum_MOI500_8h_2_RNA


title: WDC010_WNVE218A_MOI500_1h_3_RNA


title: WDC010_mockulum_MOI500_12h_3_RNA


title: MK546_3a rescue2

status: Public on Oct 07 2015

city: Rensselaer

first: Sridar

middle: V

last: Chittur

state: NY

address: One Discovery Drive, CRC 342G

department: Center for Functional Genomics

institute: SUNY-University at Albany

description: PLIER expression value derived from Expression Console software; core-exon analysis

hyb_protocol: Standard Affymetrix WT protocol

scan_protocol: Standard Affymetrix rotocol for GCS30007G scanner

data_processing: CHP files generated with Affymetrix Expression Console using Core probeset

label: biotin

source_name: MK546_3a rescue

label_protocol: Standard Affymetrix WT protocol starting with 1ug total RNA and incuding riboreduction

growth_protocol: MK+/+ cells and MK-/- cells from wild type or α3-null neonatal mice, respectively, were immortalized by SV40 large T antigen expression.  MK-/-:hα3 cells are derived from α3-null MK-/- cells stably transfected with human α3.  All keratinocytes were maintained at 33 degrees C, 8% CO2, on plates coated with 30 μg/ml denatured rat tail collagen.  Cells were grown in Eagle's Minimum Essential Medium (EMEM) supplemented with 4% FBS from which Ca2+ had been chelated, 0.05 mM CaCl2, 0.4 μg/ml hydrocortisone, 5 μg/ml insulin, 10 units/ml interferon-γ, 10 ng/ml EGF, 100 units/ml penicillin, and 100 μg/ml streptomycin.

extract_protocol: Total cellular RNA was isolated from MK cells or primary keratinocytes using the RNeasy Plus isolation kit (Qiagen, Valencia, CA), and quality was confirmed on an Agilent Bioanalyzer.

tag: integrin a3 status

value: rescued with human a3


title: MK546_a3null_1


title: MK116_wild type1

source_name: MK116_wild type

value: wild type


title: MK116_wild type2


title: MK546_3a rescue1


title: MK546_a3null_2


title: microRNA IM103 VN1203 4d RNA 4

status: Public on Sep 05 2015

hyb_protocol: The labeled cRNA is fragmented and placed on the mouse 8x60K Gene Expression microarray and hybridized at 65°C for ~17 hours.

scan_protocol: The hybridized arrays are washed and scanned at 3 μM resolution on an Agilent G2565CA High Resolution Scanner.

data_processing: Scanned images were analyzed using Agilent Feature Extraction Software (v11.5.1.1) using the protocol GE1_1105_Oct12. The limma package for R (available on Bioconductor) was used to perform background correction, quantile normalization (normalizeBetweenArrays), and summarization (avereps) to derive a single normalized intensity value per probe. Outlier samples were detected using PCA and by visual inspection of heatmaps, and all data was re-processed after removing outlier samples. All data processing for each of the biological replicates was performed independently of the other.

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 4

label_protocol: One-color labeling reactions were prepared using the Agilent One-Color Protocol (Version 6.6). 200 ng of total RNA with the appropriate concentration of RNA spike-in controls is converted into double stranded cDNA using an olido (dT) primer linked to the T7 promoter sequence and MMLV-RT. The double stranded cDNA is then in vitro transcribed by T7 RNA polymerase, which simultaneously amplifies and incorporates cyanine 3-labeled CTP into the resulting cRNA. Labeled cRNA is then purified using Qiagen RNeasy columns and the labeling efficiency determined by the NanoDrop spectrophotometer.

extract_protocol: Total RNA was isolated from TRIzol homogenate of mouse lung.

treatment_protocol: Mice were anesthetized with isofllurane and inoculated with PBS or PBS containing virus in a volume of 50 μl.

tag: age

value: 22 weeks

tag: time


title: microRNA IM103 VN1203 4d RNA 5

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 5


title: Genomic DNA from prostate biopsy 16

status: Public on Oct 15 2015

type: genomic

city: Moscow

first: Elizaveta

last: Babikova

address: Malaya Pirogovskaya 1a

department: Molecular Biology

country: Russia

institute: Research Institute of Physico-Chemical Medicine

description: Normal prostate (cancer unrelated).

hyb_protocol: Bisulphite-converted DNA was amplified, fragmented and hybridised to Illumina HumanMethylation450 Beadchips using the standard Illumina protocol.

scan_protocol: Arrays were imaged using iScan Reader using the standard recommended Illumina scanner setting.

data_processing: GenomeStudio Software v2011.1. Average Beta values were normalized using internal controls

label: Cy5 and Cy3

molecule: genomic DNA

organism: Homo sapiens

source_name: prostate biopsy, normal

label_protocol: Cy5 and Cy3

extract_protocol: Genomic DNA was extracted and purified from Formalin-fixed, paraffin-embedded tissue samples using Qiagen

tag: tissue

value: normal prostate

tag: cancer patient

value: yes

tag: sample number


title: Genomic DNA from prostate biopsy 15

description: Prostate adenocarcinoma.

source_name: prostate biopsy, adenocarcinoma

value: adenocarcinoma


title: Genomic DNA from prostate biopsy 11

description: Prostate adenocarcinoma.


title: microRNA IM103 VN1203 4d RNA 1

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 1


title: microRNA IM103 VN1203 4d RNA 3

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 3


title: Genomic DNA from prostate biopsy 20

description: Normal prostate (cancer unrelated).


title: microRNA IM103 Mock 4d RNA 2

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 2


title: Genomic DNA from prostate biopsy 12

description: Normal prostate (cancer unrelated).


title: Genomic DNA from prostate biopsy 18

description: Normal prostate (cancer unrelated).


title: Genomic DNA from prostate biopsy 14

description: Normal prostate (cancer unrelated).


title: Genomic DNA from prostate biopsy 13

description: Prostate adenocarcinoma.


title: Genomic DNA from prostate biopsy 17

description: Prostate adenocarcinoma.


title: microRNA IM103 Mock 4d RNA 3

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 3


title: Genomic DNA from prostate biopsy 8

description: Normal prostate (cancer unrelated).


title: microRNA IM103 VN1203 2d RNA 1

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 1


title: microRNA IM103 Mock 4d RNA 1

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 1


title: microRNA IM103 VN1203 2d RNA 2

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 2


title: microRNA IM103 Mock 2d RNA 3

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 3


title: Genomic DNA from prostate biopsy 22

description: Normal prostate (cancer unrelated).


title: Genomic DNA from prostate biopsy 7

description: Prostate adenocarcinoma.


title: Genomic DNA from prostate biopsy 5

description: Prostate adenocarcinoma.


title: Genomic DNA from prostate biopsy 3

description: Prostate adenocarcinoma.


title: Genomic DNA from prostate biopsy 6

description: Normal prostate (cancer unrelated).


title: Genomic DNA from prostate biopsy 23

description: Prostate adenocarcinoma.


title: microRNA IM103 Mock 2d RNA 1

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 1


title: microRNA IM103 Mock 2d RNA 2

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 2


title: microRNA IM103 VN1203 2d RNA 3

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 3


title: Genomic DNA from prostate biopsy 24

description: Normal prostate (cancer unrelated).


title: Genomic DNA from prostate biopsy 19

description: Prostate adenocarcinoma.


title: Genomic DNA from prostate biopsy 21

description: Prostate adenocarcinoma.


title: Genomic DNA from prostate biopsy 4

description: Normal prostate (cancer unrelated).


title: Genomic DNA from prostate biopsy 1

description: Prostate adenocarcinoma.


title: IM103_VN1203-NS1trunc124_7d_RNA_4

status: Public on Aug 13 2015

data_processing: Scanned images were analyzed using Agilent Feature Extraction Software (v11.5.1.1) using the protocol GE1_1105_Oct12 and the 60K grid file 028005_D_F_20140728. The limma package for R (available on Bioconductor) was used to perform background correction, quantile normalization (normalizeBetweenArrays), and summarization (avereps) to derive a single normalized intensity value per probe. Outlier samples were detected using PCA and by visual inspection of heatmaps, and all data was re-processed after removing outlier samples. All data processing for each of the biological replicates was performed independently of the other.

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 7 day(s), bioreplicate 4


title: Genomic DNA from prostate biopsy 9

description: Prostate adenocarcinoma.


title: Genomic DNA from prostate biopsy 2

description: Normal prostate (cancer unrelated).


title: Genomic DNA from prostate biopsy 10

description: Normal prostate (cancer unrelated).


title: CVID_normal (GI_1504)

status: Public on Sep 02 2015

city: Oslo

first: Silje

last: Fjellgård Jørgensen

address: Postboks 4950 Nydalen

department: Research institute of internal medicine

country: Norway

institute: Oslo University Hospital

hyb_protocol: Standard Illumina hybridization protocol

data_processing: The raw data was imported into GenomeStudio Data Analysis Software (Illumina, Inc.). Probe signal values from GenomeStudio was imported into J-Express 2012 (Dysvik B, Jonassen I. J-Express: exploring gene expression data using Java. Bioinformatics 2001;17:369-370.) for quantile normalization

source_name: duodenal biopsy

label_protocol: Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification kit

extract_protocol: Total RNA was extracted from the tissues using TissueLyzer and QIAGEN RNeasy minikit

tag: disease state

value: CVID without increased intraepithelial lymphocytes

value: duodenal biopsy


title: IM103_VN1203-NS1trunc124_7d_RNA_1

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 7 day(s), bioreplicate 1


title: IM103_VN1203-NS1trunc124_7d_RNA_2

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 7 day(s), bioreplicate 2


title: IM103_VN1203_4d_RNA_3


title: IM103_VN1203-NS1trunc124_4d_RNA_4

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 4 day(s), bioreplicate 4


title: IM103_VN1203_4d_RNA_5

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 5


title: IM103_Mock_7d_RNA_1

source_name: Lung tissue, mock-inoculated, 7 day(s), bioreplicate 1


title: IM103_VN1203_4d_RNA_1

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 1


title: IM103_VN1203-NS1trunc124_4d_RNA_3

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 4 day(s), bioreplicate 3


title: IM103_VN1203-NS1trunc124_4d_RNA_1

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 4 day(s), bioreplicate 1


title: IM103_VN1203-NS1trunc124_7d_RNA_5

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 7 day(s), bioreplicate 5


title: IM103_Mock_4d_RNA_3

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 3


title: IM103_VN1203-NS1trunc124_4d_RNA_2

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 4 day(s), bioreplicate 2


title: IM103_Mock_7d_RNA_3

source_name: Lung tissue, mock-inoculated, 7 day(s), bioreplicate 3


title: IM103_Mock_7d_RNA_2

source_name: Lung tissue, mock-inoculated, 7 day(s), bioreplicate 2


title: IM103_Mock_4d_RNA_1

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 1


title: IM103_VN1203-NS1trunc124_2d_RNA_3

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 2 day(s), bioreplicate 3


title: IM103_VN1203-NS1trunc124_2d_RNA_5

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 2 day(s), bioreplicate 5


title: IM103_VN1203_2d_RNA_5

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 5


title: IM103_VN1203_4d_RNA_4

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 4


title: IM103_Mock_4d_RNA_2

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 2


title: IM103_VN1203-NS1trunc124_2d_RNA_1

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 2 day(s), bioreplicate 1


title: IM103_VN1203_2d_RNA_3

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 3


title: microRNA IM103 VN1203 2d RNA 5


title: IM103_VN1203-NS1trunc124_1d_RNA_5

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 1 day(s), bioreplicate 5


title: IM103_VN1203-NS1trunc124_1d_RNA_4

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 1 day(s), bioreplicate 4


title: IM103_Mock_2d_RNA_2

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 2


title: IM103_Mock_2d_RNA_3

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 3


title: IM103_VN1203_2d_RNA_2

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 2


title: IM103_Mock_2d_RNA_1

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 1


title: IFNaIHH001_IFN_18h_3

status: Public on Aug 06 2015

hyb_protocol: Sample labeling and array hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technology). Briefly, total RNA from each sample was linearly amplified and labeled with Cy3-UTP. The Labeled cRNAs were purified by RNeasy Mini Kit (Qiagen). The concentration and specific activity of the labeled cRNAs (pmol Cy3/μg cRNA) were measured by NanoDrop ND-1000. 1 μg of each labeled cRNA was fragmented by adding 11 μl 10 × Blocking Agent and 2.2 μl of 25×Fragmentation Buffer, then heated at 60 °C for 30 min, and finally 55 μl 2 × GE Hybridization buffer was added to dilute the labeled cRNA. 100μl of hybridization solution was dispensed into the gasket slide and assembled to the gene expression microarray slide. The slides were incubated for 17 hours at 65°C in an Agilent Hybridization Oven.

source_name: IHH cells, IFN treatment, 18 hours, replicate 2

label_protocol: Total RNA from each sample was amplified and transcribed into fluorescent cRNA using Agilent’s Quick Amp Labeling protocol (version 5.7, Agilent Technologies)

growth_protocol: IHH cells were maintained in DMEM medium with 5% FCS with L-glut, Anti-Anti, Na Pyruvate, and Non-essential AA

extract_protocol: RNA samples were collected by lysing cells directly in TRIzol.  Lysates were scraped into a tube, vortexed thoroughly and directly frozen at -80°C.

treatment_protocol: Treatments were initiated by replacing culture medium (containing 10% FBS) with fresh medium containing 500 U/ml of human interferon α (PBL Biosciences).  Mock-treated cells were given normal culture medium only.  Mock and treated cells were incubated at 37°C until sample collection time points.

value: IFN

tag: replicate


title: IM103_VN1203_1d_RNA_3

source_name: Lung tissue, VN1203-inoculated, 1 day(s), bioreplicate 3


title: IM103_Mock_1d_RNA_3

source_name: Lung tissue, mock-inoculated, 1 day(s), bioreplicate 3


title: IFNaIHH001_Mock_18h_3

source_name: IHH cells, mock treatment (no virus), 18 hours, replicate 3

value: Mock


title: IFNaIHH001_IFN_18h_1

source_name: IHH cells, IFN treatment, 18 hours, replicate 1


title: IFNaIHH001_IFN_12h_1

source_name: IHH cells, IFN treatment, 12 hours, replicate 1


title: IM103_VN1203_1d_RNA_4

source_name: Lung tissue, VN1203-inoculated, 1 day(s), bioreplicate 4


title: IFNaIHH001_IFN_12h_3

source_name: IHH cells, IFN treatment, 12 hours, replicate 3


title: IFNaIHH001_Mock_18h_2

source_name: IHH cells, mock treatment (no virus), 18 hours, replicate 2


title: IFNaIHH001_IFN_12h_2

source_name: IHH cells, IFN treatment, 12 hours, replicate 2


title: IFNaIHH001_Mock_12h_2

source_name: IHH cells, mock treatment (no virus), 12 hours, replicate 2


title: IFNaIHH001_Mock_12h_3

source_name: IHH cells, mock treatment (no virus), 12 hours, replicate 3


title: IM103_VN1203_2d_RNA_1

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 1


title: IFNaIHH001_Mock_18h_1

source_name: IHH cells, mock treatment (no virus), 18 hours, replicate 1


title: IM103_Mock_1d_RNA_2

source_name: Lung tissue, mock-inoculated, 1 day(s), bioreplicate 2


title: IM103_VN1203_1d_RNA_2

source_name: Lung tissue, VN1203-inoculated, 1 day(s), bioreplicate 2


title: IFNaIHH001_IFN_6h_3

source_name: IHH cells, IFN treatment, 6 hours, replicate 3


title: microRNA_IFNaIHH001_IFN_18h_3

source_name: IHH cells, IFN treatment, 18 hours, replicate 3


title: IFNaIHH001_IFN_6h_1

source_name: IHH cells, IFN treatment, 6 hours, replicate 1


title: microRNA_IFNaIHH001_IFN_18h_2

source_name: IHH cells, IFN treatment, 18 hours, replicate 2


title: IM103_VN1203-NS1trunc124_1d_RNA_3

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 1 day(s), bioreplicate 3


title: IFNaIHH001_Mock_6h_3

source_name: IHH cells, mock treatment (no virus), 6 hours, replicate 3


title: IM103_Mock_1d_RNA_1

source_name: Lung tissue, mock-inoculated, 1 day(s), bioreplicate 1


title: IFNaIHH001_Mock_12h_1

source_name: IHH cells, mock treatment (no virus), 12 hours, replicate 1


title: microRNA_IFNaIHH001_IFN_18h_1

source_name: IHH cells, IFN treatment, 18 hours, replicate 1


title: microRNA_IFNaIHH001_Mock_18h_2

source_name: IHH cells, mock treatment (no virus), 18 hours, replicate 2


title: microRNA_IFNaIHH001_IFN_12h_1

source_name: IHH cells, IFN treatment, 12 hours, replicate 1


title: microRNA_IFNaIHH001_Mock_18h_1


title: microRNA_IFNaIHH001_Mock_12h_3


title: microRNA_IFNaIHH001_IFN_12h_2

source_name: IHH cells, IFN treatment, 12 hours, replicate 2


title: IFNaIHH001_Mock_6h_1

source_name: IHH cells, mock treatment (no virus), 6 hours, replicate 1


title: microRNA_IFNaIHH001_Mock_12h_2

source_name: IHH cells, mock treatment (no virus), 12 hours, replicate 2


title: microRNA_IFNaIHH001_IFN_6h_1


title: microRNA_IFNaIHH001_IFN_6h_2

source_name: IHH cells, IFN treatment, 6 hours, replicate 2


title: microRNA_IFNaIHH001_Mock_6h_1


title: IFNaIHH001_Mock_6h_2

source_name: IHH cells, mock treatment (no virus), 6 hours, replicate 2


title: microRNA_IFNaIHH001_Mock_6h_2


title: IFNaIHH001_IFN_6h_2


title: microRNA_IM103_VN1203_4d_RNA_5

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 5


title: microRNA_IFNaIHH001_IFN_6h_3

source_name: IHH cells, IFN treatment, 6 hours, replicate 3


title: microRNA_IFNaIHH001_Mock_12h_1


title: IM103_VN1203-NS1trunc124_7d_RNA_5

source_name: Lung tissue, VN1203-inoculated, 7 day(s), bioreplicate 5


title: microRNA_IM103_VN1203_4d_RNA_4

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 4


title: microRNA_IM103_VN1203_4d_RNA_3

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 3


title: IM103_VN1203-NS1trunc124_7d_RNA_4

source_name: Lung tissue, VN1203-inoculated, 7 day(s), bioreplicate 4


title: microRNA_IM103_VN1203_4d_RNA_1

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 1


title: IM103_VN1203-NS1trunc124_4d_RNA_1

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 4 day(s), bioreplicate 1


title: IM103_Mock_7d_RNA_3

source_name: Lung tissue, mock-inoculated, 7 day(s), bioreplicate 3


title: IM103_VN1203-NS1trunc124_4d_RNA_3

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 4 day(s), bioreplicate 3


title: IM103_VN1203-NS1trunc124_7d_RNA_1

source_name: Lung tissue, VN1203-inoculated, 7 day(s), bioreplicate 1


title: microRNA_IM103_Mock_4d_RNA_3

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 3


title: IM103_VN1203_4d_RNA_3


title: IM103_Mock_7d_RNA_2

source_name: Lung tissue, mock-inoculated, 7 day(s), bioreplicate 2


title: microRNA_IM103_Mock_4d_RNA_2

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 2


title: IM103_Mock_4d_RNA_1

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 1


title: IM103_VN1203-NS1trunc124_4d_RNA_2

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 4 day(s), bioreplicate 2


title: IM103_Mock_7d_RNA_1

source_name: Lung tissue, mock-inoculated, 7 day(s), bioreplicate 1


title: IM103_Mock_4d_RNA_2


title: IM103_VN1203_4d_RNA_1


title: IM103_VN1203-NS1trunc124_4d_RNA_4

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 4 day(s), bioreplicate 4


title: IM103_VN1203_4d_RNA_5

source_name: Lung tissue, VN1203-inoculated, 4 day(s), bioreplicate 5


title: microRNA_IM103_Mock_4d_RNA_1


title: IM103_VN1203_4d_RNA_4


title: microRNA_IM103_VN1203_2d_RNA_5

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 5


title: IM103_VN1203-NS1trunc124_2d_RNA_3

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 2 day(s), bioreplicate 3


title: microRNA_IM103_VN1203_2d_RNA_3

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 3


title: microRNA_IM103_VN1203_2d_RNA_2

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 2


title: microRNA_IM103_Mock_2d_RNA_3

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 3


title: microRNA_IM103_VN1203_2d_RNA_1

source_name: Lung tissue, VN1203-inoculated, 2 day(s), bioreplicate 1


title: microRNA_IM103_Mock_2d_RNA_2

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 2


title: microRNA_IM103_Mock_2d_RNA_1

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 1


title: microRNA_IFNaIHH001_Mock_6h_3

source_name: IHH cells, mock treatment (no virus), 6 hours, replicate 3


title: IM103_VN1203-NS1trunc124_7d_RNA_2

source_name: Lung tissue, VN1203-inoculated, 7 day(s), bioreplicate 2


title: IM103_Mock_4d_RNA_3

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 3


title: IM103_VN1203-NS1trunc124_2d_RNA_5

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 2 day(s), bioreplicate 5


title: IM103_VN1203-NS1trunc124_1d_RNA_3

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 1 day(s), bioreplicate 3


title: IM103_Mock_2d_RNA_1


title: IM103_VN1203_2d_RNA_3


title: WB_non-statin_pt_447

status: Public on Jul 23 2015

city: Vancouver

first: Bruce

middle: Maxwell

last: McManus

state: BC

address: 1081 Burrard Street

department: UBC James Hogg Research Centre

country: Canada

institute: PROOF Centre of Excellence

hyb_protocol: Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)

scan_protocol: Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.

data_processing: RMA normalization with Farms bioconductor package to filter out non-informative probe sets

source_name: PAXgene whole blood mRNA

label_protocol: Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)

extract_protocol: Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)

tag: statin user (y/n)

value: N

tag: disease

value: COPD

tag: Sex

value: F

tag: smoking status

value: Former smoker

tag: fev1% predicted


title: WB_non-statin_pt_446

value: M

value: Current smoker


title: WB_statin_pt_168

value: Y


title: IM103_VN1203-NS1trunc124_1d_RNA_5

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 1 day(s), bioreplicate 5

tag: strain


title: WB_non-statin_pt_449


title: IM103_VN1203-NS1trunc124_1d_RNA_4

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 1 day(s), bioreplicate 4


title: IM103_VN1203-NS1trunc124_2d_RNA_1

source_name: Lung tissue, VN1203-NS1-trunc124 mutant-inoculated, 2 day(s), bioreplicate 1


title: IM103_VN1203_1d_RNA_3

source_name: Lung tissue, VN1203-inoculated, 1 day(s), bioreplicate 3


title: WB_non-statin_pt_448


title: WB_non-statin_pt_445


title: IM103_Mock_2d_RNA_3

value: mockulum


title: IM103_VN1203_2d_RNA_1


title: IM103_VN1203_1d_RNA_1

source_name: Lung tissue, VN1203-inoculated, 1 day(s), bioreplicate 1


title: WB_non-statin_pt_443


title: WB_non-statin_pt_441


title: IM103_Mock_2d_RNA_2


title: IM103_VN1203_2d_RNA_2


title: IM103_Mock_1d_RNA_2

source_name: Lung tissue, mock-inoculated, 1 day(s), bioreplicate 2


title: IM103_VN1203_1d_RNA_2

source_name: Lung tissue, VN1203-inoculated, 1 day(s), bioreplicate 2


title: IM103_VN1203_1d_RNA_4

source_name: Lung tissue, VN1203-inoculated, 1 day(s), bioreplicate 4


title: WB_non-statin_pt_444


title: IM103_Mock_1d_RNA_3

source_name: Lung tissue, mock-inoculated, 1 day(s), bioreplicate 3


title: WB_non-statin_pt_442


title: WB_non-statin_pt_440


title: WB_non-statin_pt_439


title: WB_non-statin_pt_434


title: IM103_Mock_1d_RNA_1

source_name: Lung tissue, mock-inoculated, 1 day(s), bioreplicate 1


title: WB_non-statin_pt_432


title: WB_non-statin_pt_436


title: WB_non-statin_pt_438


title: WB_non-statin_pt_429


title: WB_statin_pt_166


title: WB_non-statin_pt_431


title: WB_non-statin_pt_437


title: WB_non-statin_pt_425


title: WB_non-statin_pt_428


title: WB_non-statin_pt_433


title: WB_statin_pt_164


title: WB_non-statin_pt_427


title: WB_statin_pt_167


title: WB_non-statin_pt_422


title: WB_non-statin_pt_423


title: WB_statin_pt_165


title: WB_non-statin_pt_435


title: WB_statin_pt_163


title: WB_non-statin_pt_421


title: WB_non-statin_pt_430


title: WB_non-statin_pt_426


title: WB_non-statin_pt_424


title: WB_non-statin_pt_419


title: WB_non-statin_pt_420


title: WB_non-statin_pt_416


title: WB_non-statin_pt_418


title: WB_non-statin_pt_413


title: WB_non-statin_pt_415


title: WB_non-statin_pt_417


title: WB_non-statin_pt_412


title: WB_non-statin_pt_410


title: WB_non-statin_pt_409


title: WB_non-statin_pt_406


title: WB_non-statin_pt_414


title: WB_non-statin_pt_399


title: WB_non-statin_pt_403


title: WB_non-statin_pt_407


title: WB_non-statin_pt_402


title: WB_statin_pt_157


title: WB_non-statin_pt_408


title: WB_statin_pt_159


title: WB_non-statin_pt_405


title: WB_statin_pt_160


title: WB_non-statin_pt_411


title: WB_statin_pt_158


title: WB_statin_pt_161


title: WB_non-statin_pt_400


title: WB_statin_pt_156


title: WB_statin_pt_162


title: WB_non-statin_pt_404


title: WB_non-statin_pt_398


title: WB_non-statin_pt_395


title: WB_non-statin_pt_396


title: WB_non-statin_pt_397


title: WB_non-statin_pt_393


title: WB_non-statin_pt_401


title: WB_non-statin_pt_392


title: WB_statin_pt_155


title: WB_non-statin_pt_386


title: WB_non-statin_pt_381


title: WB_non-statin_pt_388


title: WB_non-statin_pt_394


title: WB_non-statin_pt_383


title: WB_non-statin_pt_390


title: WB_statin_pt_150


title: WB_statin_pt_148


title: WB_statin_pt_152


title: WB_non-statin_pt_384


title: WB_statin_pt_149


title: WB_statin_pt_153


title: WB_non-statin_pt_389


title: WB_non-statin_pt_391


title: WB_non-statin_pt_382


title: WB_statin_pt_147


title: WB_non-statin_pt_378


title: WB_non-statin_pt_377


title: WB_non-statin_pt_380


title: WB_non-statin_pt_387


title: WB_statin_pt_151


title: WB_statin_pt_143


title: WB_non-statin_pt_374


title: WB_non-statin_pt_372


title: WB_statin_pt_144


title: WB_non-statin_pt_369


title: WB_non-statin_pt_376


title: WB_statin_pt_154


title: WB_non-statin_pt_365


title: WB_statin_pt_145


title: WB_non-statin_pt_379


title: WB_statin_pt_141


title: WB_non-statin_pt_370


title: WB_non-statin_pt_366


title: WB_non-statin_pt_364


title: WB_non-statin_pt_368


title: WB_non-statin_pt_375


title: WB_non-statin_pt_385


title: WB_non-statin_pt_373


title: WB_statin_pt_146


title: WB_statin_pt_142


title: WB_statin_pt_140


title: WB_non-statin_pt_367


title: WB_non-statin_pt_371


title: WB_statin_pt_138


title: WB_non-statin_pt_361


title: WB_statin_pt_139


title: WB_non-statin_pt_360


title: WB_non-statin_pt_362


title: WB_statin_pt_136


title: WB_non-statin_pt_355


title: WB_statin_pt_137


title: WB_non-statin_pt_354


title: WB_non-statin_pt_363


title: WB_non-statin_pt_352


title: WB_statin_pt_135


title: WB_non-statin_pt_349


title: WB_non-statin_pt_353


title: WB_statin_pt_134


title: WB_non-statin_pt_357


title: WB_non-statin_pt_359


title: WB_non-statin_pt_344


title: WB_non-statin_pt_345


title: WB_statin_pt_132


title: WB_non-statin_pt_356


title: WB_non-statin_pt_346


title: WB_non-statin_pt_347


title: WB_non-statin_pt_350


title: WB_statin_pt_133


title: WB_non-statin_pt_342


title: WB_statin_pt_131


title: WB_non-statin_pt_348


title: WB_non-statin_pt_343


title: WB_non-statin_pt_340


title: WB_statin_pt_128


title: WB_statin_pt_126


title: WB_statin_pt_127


title: WB_non-statin_pt_341


title: WB_statin_pt_129


title: WB_non-statin_pt_351


title: WB_non-statin_pt_358


title: WB_statin_pt_125


title: WB_statin_pt_130


title: WB_non-statin_pt_333


title: WB_non-statin_pt_332


title: WB_statin_pt_121


title: WB_non-statin_pt_334


title: WB_non-statin_pt_336


title: WB_statin_pt_120


title: WB_statin_pt_124


title: WB_non-statin_pt_339


title: WB_non-statin_pt_331


title: WB_non-statin_pt_335


title: WB_non-statin_pt_337


title: WB_non-statin_pt_324


title: WB_non-statin_pt_329


title: WB_non-statin_pt_330


title: WB_non-statin_pt_338


title: WB_non-statin_pt_326


title: WB_statin_pt_122


title: WB_non-statin_pt_325


title: WB_non-statin_pt_322


title: WB_statin_pt_119


title: WB_non-statin_pt_328


title: WB_statin_pt_123


title: WB_statin_pt_118


title: WB_non-statin_pt_321


title: WB_non-statin_pt_320


title: WB_statin_pt_117


title: WB_non-statin_pt_327


title: WB_non-statin_pt_318


title: WB_non-statin_pt_316


title: WB_non-statin_pt_315


title: WB_non-statin_pt_317


title: WB_non-statin_pt_313


title: WB_non-statin_pt_311


title: WB_non-statin_pt_309


title: WB_non-statin_pt_312


title: WB_non-statin_pt_323


title: WB_non-statin_pt_308


title: WB_non-statin_pt_314


title: WB_non-statin_pt_319


title: WB_non-statin_pt_303


title: WB_statin_pt_116


title: WB_non-statin_pt_305


title: WB_non-statin_pt_304


title: WB_non-statin_pt_306


title: WB_non-statin_pt_298


title: WB_non-statin_pt_301


title: WB_non-statin_pt_297


title: WB_non-statin_pt_302


title: WB_non-statin_pt_300


title: WB_statin_pt_114


title: WB_non-statin_pt_296


title: WB_non-statin_pt_294


title: WB_non-statin_pt_292


title: WB_non-statin_pt_295


title: WB_non-statin_pt_307


title: WB_statin_pt_115


title: WB_non-statin_pt_299


title: WB_non-statin_pt_290


title: WB_non-statin_pt_293


title: WB_statin_pt_113


title: WB_non-statin_pt_310


title: WB_statin_pt_111


title: WB_statin_pt_112


title: WB_non-statin_pt_291


title: WB_non-statin_pt_287


title: WB_non-statin_pt_289


title: WB_non-statin_pt_288


title: WB_non-statin_pt_284


title: WB_non-statin_pt_282


title: WB_non-statin_pt_285


title: WB_non-statin_pt_277


title: WB_non-statin_pt_281


title: WB_non-statin_pt_278


title: WB_non-statin_pt_280


title: WB_non-statin_pt_276


title: WB_non-statin_pt_279


title: WB_non-statin_pt_275


title: WB_non-statin_pt_269


title: WB_non-statin_pt_271


title: WB_non-statin_pt_274


title: WB_non-statin_pt_267


title: WB_non-statin_pt_266


title: WB_non-statin_pt_272


title: WB_non-statin_pt_273


title: WB_non-statin_pt_268


title: WB_non-statin_pt_270


title: WB_non-statin_pt_265


title: WB_statin_pt_110


title: WB_non-statin_pt_283


title: WB_statin_pt_109


title: WB_statin_pt_108


title: WB_statin_pt_105


title: WB_statin_pt_104


title: WB_non-statin_pt_264


title: WB_statin_pt_106


title: WB_non-statin_pt_286


title: WB_statin_pt_103


title: WB_statin_pt_102


title: WB_non-statin_pt_262


title: WB_non-statin_pt_263


title: WB_non-statin_pt_261


title: WB_non-statin_pt_260


title: WB_statin_pt_96


title: WB_statin_pt_97


title: WB_statin_pt_95


title: WB_non-statin_pt_256


title: WB_non-statin_pt_257


title: WB_statin_pt_100


title: WB_statin_pt_92


title: WB_non-statin_pt_254


title: WB_statin_pt_94


title: WB_statin_pt_107


title: WB_non-statin_pt_259


title: WB_statin_pt_99


title: WB_statin_pt_93


title: WB_non-statin_pt_252


title: WB_statin_pt_98


title: WB_statin_pt_89


title: WB_non-statin_pt_255


title: WB_non-statin_pt_251


title: WB_non-statin_pt_253


title: WB_statin_pt_101


title: WB_statin_pt_91


title: WB_statin_pt_88


title: WB_non-statin_pt_250


title: WB_statin_pt_90


title: WB_non-statin_pt_249


title: WB_statin_pt_85


title: WB_non-statin_pt_248


title: WB_non-statin_pt_245


title: WB_non-statin_pt_247


title: WB_statin_pt_84


title: WB_statin_pt_87


title: WB_non-statin_pt_258


title: WB_statin_pt_83


title: WB_statin_pt_82


title: WB_non-statin_pt_243


title: WB_statin_pt_79


title: WB_non-statin_pt_237


title: WB_non-statin_pt_238


title: WB_non-statin_pt_242


title: WB_non-statin_pt_236


title: WB_non-statin_pt_233


title: WB_non-statin_pt_241


title: WB_non-statin_pt_232


title: WB_statin_pt_77


title: WB_non-statin_pt_246


title: WB_non-statin_pt_244


title: WB_statin_pt_78


title: WB_statin_pt_81


title: WB_statin_pt_86


title: WB_non-statin_pt_235


title: WB_non-statin_pt_240


title: WB_statin_pt_75


title: WB_non-statin_pt_239


title: WB_non-statin_pt_231


title: WB_statin_pt_74


title: WB_statin_pt_73


title: WB_non-statin_pt_229


title: WB_non-statin_pt_234


title: WB_statin_pt_80


title: WB_statin_pt_72


title: WB_statin_pt_71


title: WB_statin_pt_69


title: WB_statin_pt_70


title: WB_non-statin_pt_230


title: WB_statin_pt_68


title: WB_non-statin_pt_228


title: WB_non-statin_pt_224


title: WB_non-statin_pt_225


title: WB_non-statin_pt_220


title: WB_non-statin_pt_222


title: WB_non-statin_pt_216

value: Control

value: Never smoked


title: WB_statin_pt_67


title: WB_non-statin_pt_226


title: WB_non-statin_pt_223


title: WB_non-statin_pt_217


title: WB_non-statin_pt_215


title: WB_non-statin_pt_219


title: WB_statin_pt_66


title: WB_non-statin_pt_212


title: WB_non-statin_pt_218


title: WB_statin_pt_63


title: WB_non-statin_pt_213


title: WB_statin_pt_65


title: WB_non-statin_pt_221


title: WB_statin_pt_64


title: WB_statin_pt_60


title: WB_statin_pt_76


title: WB_non-statin_pt_210


title: WB_non-statin_pt_227


title: WB_statin_pt_62


title: WB_non-statin_pt_208


title: WB_non-statin_pt_207


title: WB_statin_pt_61


title: WB_non-statin_pt_211


title: WB_non-statin_pt_202


title: WB_non-statin_pt_200


title: WB_non-statin_pt_214


title: WB_non-statin_pt_209


title: WB_non-statin_pt_203


title: WB_non-statin_pt_198


title: WB_non-statin_pt_201


title: WB_non-statin_pt_197


title: WB_statin_pt_58


title: WB_statin_pt_57


title: WB_non-statin_pt_199


title: WB_statin_pt_59


title: WB_non-statin_pt_195


title: WB_statin_pt_56


title: WB_non-statin_pt_205


title: WB_non-statin_pt_206


title: WB_non-statin_pt_192


title: WB_non-statin_pt_191


title: WB_non-statin_pt_204


title: WB_non-statin_pt_193


title: WB_non-statin_pt_194


title: WB_non-statin_pt_196


title: WB_non-statin_pt_189


title: WB_non-statin_pt_190


title: WB_non-statin_pt_188


title: WB_statin_pt_54


title: WB_non-statin_pt_187


title: WB_non-statin_pt_184


title: WB_non-statin_pt_185


title: WB_statin_pt_47


title: WB_statin_pt_49


title: WB_statin_pt_51


title: WB_non-statin_pt_176


title: WB_non-statin_pt_182


title: WB_non-statin_pt_186


title: WB_statin_pt_45


title: WB_statin_pt_52


title: WB_non-statin_pt_183


title: WB_non-statin_pt_175


title: WB_non-statin_pt_173


title: WB_non-statin_pt_168


title: WB_non-statin_pt_179


title: WB_non-statin_pt_169


title: WB_non-statin_pt_167


title: WB_non-statin_pt_178


title: WB_statin_pt_50


title: WB_statin_pt_44


title: WB_non-statin_pt_180


title: WB_non-statin_pt_165


title: WB_non-statin_pt_174


title: WB_non-statin_pt_170


title: WB_non-statin_pt_166


title: WB_non-statin_pt_164


title: WB_non-statin_pt_172


title: WB_statin_pt_42


title: WB_non-statin_pt_163


title: WB_statin_pt_41


title: WB_non-statin_pt_181


title: WB_non-statin_pt_159


title: WB_statin_pt_46


title: WB_statin_pt_53


title: WB_non-statin_pt_171


title: WB_non-statin_pt_162


title: WB_non-statin_pt_160


title: WB_non-statin_pt_161


title: WB_statin_pt_40


title: WB_non-statin_pt_156


title: WB_non-statin_pt_157


title: WB_non-statin_pt_154


title: WB_non-statin_pt_152


title: WB_statin_pt_38


title: WB_non-statin_pt_150


title: WB_non-statin_pt_153


title: WB_statin_pt_39


title: WB_non-statin_pt_145


title: WB_non-statin_pt_155


title: WB_non-statin_pt_146


title: WB_non-statin_pt_147


title: WB_non-statin_pt_151


title: WB_non-statin_pt_148


title: WB_statin_pt_36


title: WB_statin_pt_35


title: WB_non-statin_pt_149


title: WB_non-statin_pt_144


title: WB_non-statin_pt_177


title: WB_statin_pt_43


title: WB_statin_pt_55


title: WB_statin_pt_48


title: WB_non-statin_pt_136


title: WB_statin_pt_34


title: WB_non-statin_pt_143


title: WB_non-statin_pt_141


title: WB_non-statin_pt_140


title: WB_non-statin_pt_158


title: WB_non-statin_pt_138


title: WB_non-statin_pt_137


title: WB_non-statin_pt_142


title: WB_non-statin_pt_132


title: WB_statin_pt_37


title: WB_non-statin_pt_133


title: WB_non-statin_pt_139


title: WB_statin_pt_32


title: WB_statin_pt_28


title: WB_statin_pt_31


title: WB_non-statin_pt_124


title: WB_non-statin_pt_123


title: WB_statin_pt_29


title: WB_non-statin_pt_129


title: WB_non-statin_pt_135


title: WB_statin_pt_30


title: WB_non-statin_pt_125


title: WB_non-statin_pt_119


title: WB_non-statin_pt_131


title: WB_non-statin_pt_112


title: WB_non-statin_pt_120


title: WB_statin_pt_27


title: WB_non-statin_pt_134


title: WB_non-statin_pt_126


title: WB_non-statin_pt_130


title: WB_non-statin_pt_122


title: WB_non-statin_pt_128


title: WB_non-statin_pt_115


title: WB_non-statin_pt_117


title: WB_non-statin_pt_121


title: WB_non-statin_pt_113


title: WB_non-statin_pt_111


title: WB_non-statin_pt_127


title: WB_non-statin_pt_116


title: WB_statin_pt_33


title: WB_statin_pt_26


title: WB_non-statin_pt_114


title: WB_non-statin_pt_104


title: WB_statin_pt_25


title: WB_non-statin_pt_110


title: WB_non-statin_pt_100


title: WB_non-statin_pt_109


title: WB_non-statin_pt_118


title: WB_non-statin_pt_99


title: WB_non-statin_pt_108


title: WB_non-statin_pt_93


title: WB_non-statin_pt_97


title: WB_non-statin_pt_105


title: WB_non-statin_pt_94


title: WB_non-statin_pt_103


title: WB_non-statin_pt_98


title: WB_non-statin_pt_92


title: WB_non-statin_pt_96


title: WB_non-statin_pt_107


title: WB_non-statin_pt_102


title: WB_non-statin_pt_101


title: WB_statin_pt_24


title: WB_non-statin_pt_95


title: WB_statin_pt_23


title: WB_non-statin_pt_106


title: WB_non-statin_pt_80


title: WB_statin_pt_22


title: WB_non-statin_pt_86


title: WB_non-statin_pt_82


title: WB_non-statin_pt_81


title: WB_non-statin_pt_90


title: WB_non-statin_pt_87


title: WB_non-statin_pt_79


title: WB_non-statin_pt_88


title: WB_non-statin_pt_89


title: WB_non-statin_pt_83


title: WB_non-statin_pt_84


title: WB_non-statin_pt_77


title: WB_non-statin_pt_85


title: WB_non-statin_pt_73


title: WB_non-statin_pt_75


title: WB_non-statin_pt_72


title: WB_non-statin_pt_91


title: WB_non-statin_pt_78


title: WB_non-statin_pt_76


title: WB_non-statin_pt_71


title: WB_non-statin_pt_67


title: WB_non-statin_pt_68


title: WB_statin_pt_21


title: WB_non-statin_pt_74


title: WB_non-statin_pt_66


title: WB_non-statin_pt_69


title: WB_non-statin_pt_63


title: WB_non-statin_pt_70


title: WB_non-statin_pt_64


title: WB_non-statin_pt_59


title: WB_non-statin_pt_62


title: WB_non-statin_pt_65


title: WB_non-statin_pt_56


title: WB_non-statin_pt_58


title: WB_non-statin_pt_57


title: WB_non-statin_pt_51


title: WB_non-statin_pt_45


title: WB_non-statin_pt_53


title: WB_non-statin_pt_55


title: WB_non-statin_pt_54


title: WB_statin_pt_20


title: WB_non-statin_pt_39


title: WB_non-statin_pt_52


title: WB_non-statin_pt_49


title: WB_non-statin_pt_41


title: WB_non-statin_pt_47


title: WB_non-statin_pt_61


title: WB_non-statin_pt_48


title: WB_non-statin_pt_60


title: WB_non-statin_pt_50


title: WB_non-statin_pt_37


title: WB_non-statin_pt_36


title: WB_statin_pt_18


title: WB_statin_pt_19


title: WB_non-statin_pt_33


title: WB_non-statin_pt_46


title: WB_non-statin_pt_44


title: WB_non-statin_pt_42


title: WB_non-statin_pt_24


title: WB_non-statin_pt_40


title: WB_statin_pt_17


title: WB_statin_pt_13


title: WB_statin_pt_12


title: WB_statin_pt_10


title: WB_non-statin_pt_38


title: WB_statin_pt_16


title: WB_non-statin_pt_30


title: WB_non-statin_pt_35


title: WB_non-statin_pt_32


title: WB_statin_pt_9


title: WB_non-statin_pt_22


title: WB_non-statin_pt_31


title: WB_non-statin_pt_21


title: WB_non-statin_pt_34


title: WB_non-statin_pt_25


title: WB_non-statin_pt_43


title: WB_non-statin_pt_29


title: WB_statin_pt_7


title: WB_non-statin_pt_26


title: WB_statin_pt_14


title: WB_non-statin_pt_27


title: WB_statin_pt_15


title: WB_non-statin_pt_15


title: WB_non-statin_pt_14


title: WB_non-statin_pt_28


title: WB_non-statin_pt_16


title: WB_statin_pt_6


title: WB_non-statin_pt_17


title: WB_statin_pt_11


title: WB_statin_pt_5


title: WB_non-statin_pt_11


title: WB_non-statin_pt_20


title: WB_non-statin_pt_12


title: WB_non-statin_pt_23


title: WB_non-statin_pt_19


title: WB_non-statin_pt_13


title: WB_statin_pt_8


title: WB_non-statin_pt_3


title: WB_statin_pt_4


title: WB_non-statin_pt_5


title: WB_non-statin_pt_6


title: WB_statin_pt_2


title: WB_non-statin_pt_4


title: WB_non-statin_pt_9


title: WB_non-statin_pt_18


title: WB_non-statin_pt_10


title: WB_non-statin_pt_2


title: WB_non-statin_pt_1


title: WB_non-statin_pt_7


title: WB_non-statin_pt_8


title: IFNaCL001_IFN_18h_4_microRNA

status: Public on Jun 25 2015

description: microRNA

source_name: Calu-3, IFNα-inoculated, 18hr, bioreplicate 4

growth_protocol: SCL002.0P: Maintenance, Plating and Virus Infection of Calu-3 cells

extract_protocol: RNA samples were collected by lysing cells directly in TRIzol.  Lysates were scraped into a tube, vortexed thoroughly and directly frozen at -80°C. To obtain cell pellets, cells were scraped into cold 1X PBS after washing one time with cold 1X PBS in the plate.  Scraped cells were centrifuged for 10 minutes at 4°C, PBS was removed by aspiration, and pellets were directly frozen at -80°C.

tag: cell line


title: WB_statin_pt_1


title: IFNaCL001_IFN_18h_1_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 18hr, bioreplicate 1


title: IFNaCL001_Mock_18h_4_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 18hr, bioreplicate 4

value: Mockulum


title: IFNaCL001_IFN_12h_4_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 12hr, bioreplicate 4


title: WB_statin_pt_3


title: IFNaCL001_Mock_18h_1_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 18hr, bioreplicate 1


title: IFNaCL001_IFN_18h_2_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 18hr, bioreplicate 2


title: IFNaCL001_IFN_18h_3_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 18hr, bioreplicate 3


title: IFNaCL001_IFN_12h_3_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 12hr, bioreplicate 3


title: IFNaCL001_Mock_18h_2_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 18hr, bioreplicate 2


title: IFNaCL001_IFN_12h_2_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 12hr, bioreplicate 2


title: IFNaCL001_IFN_18h_4_RNA


title: IFNaCL001_IFN_12h_1_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 12hr, bioreplicate 1


title: IFNaCL001_IFN_18h_2_RNA


title: IFNaCL001_Mock_12h_3_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 12hr, bioreplicate 3


title: IFNaCL001_IFN_18h_3_RNA


title: IFNaCL001_Mock_12h_2_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 12hr, bioreplicate 2


title: IFNaCL001_IFN_6h_3_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 6hr, bioreplicate 3


title: IFNaCL001_IFN_6h_4_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 6hr, bioreplicate 4


title: IFNaCL001_Mock_12h_1_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 12hr, bioreplicate 1


title: IFNaCL001_IFN_18h_1_RNA


title: IFNaCL001_IFN_6h_2_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 6hr, bioreplicate 2


title: IFNaCL001_Mock_6h_3_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 6hr, bioreplicate 3


title: IFNaCL001_IFN_6h_1_microRNA

description: microRNA

source_name: Calu-3, IFNα-inoculated, 6hr, bioreplicate 1


title: IFNaCL001_Mock_18h_3_RNA

source_name: Calu-3, mock-inoculated, 18hr, bioreplicate 3


title: IFNaCL001_Mock_18h_1_RNA


title: IFNaCL001_Mock_6h_2_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 6hr, bioreplicate 2


title: IFNaCL001_IFN_12h_4_RNA

source_name: Calu-3, IFNα-inoculated, 12hr, bioreplicate 4


title: IFNaCL001_Mock_6h_1_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 6hr, bioreplicate 1


title: IFNaCL001_Mock_6h_4_microRNA

description: microRNA

source_name: Calu-3, mock-inoculated, 6hr, bioreplicate 4


title: IFNaCL001_IFN_12h_3_RNA

source_name: Calu-3, IFNα-inoculated, 12hr, bioreplicate 3


title: IFNaCL001_IFN_12h_2_RNA


title: IFNaCL001_IFN_12h_1_RNA


title: IFNaCL001_Mock_12h_3_RNA


title: IFNaCL001_Mock_12h_2_RNA


title: IFNaCL001_Mock_18h_2_RNA

source_name: Calu-3, mock-inoculated, 18hr, bioreplicate 2


title: IFNaCL001_Mock_18h_3_microRNA

description: microRNA


title: IFNaCL001_Mock_12h_1_RNA


title: IFNaCL001_IFN_6h_4_RNA


title: IFNaCL001_IFN_6h_3_RNA


title: EIHH002_EBOV-WT_48hr_2_microRNA

status: Public on Jun 18 2015

source_name: IHH_EBOV-WT treatment_48 hrs

extract_protocol: Cells were scraped into Trizol and total RNA was isolated from the Trizol extract.

treatment_protocol: Cells were infected with wild-type Ebola viruses at a multiplicity of infection of 0.5.

value: IHH

tag: cell type

value: Immortalized Human Hepatocytes

value: EBOV-WT

tag: time (hrs post infection)

value: 48 hours


title: EIHH002_EBOV-WT_24hr_3_microRNA

source_name: IHH_EBOV-WT treatment_24 hrs

tag: virus

value: 24 hours


title: IFNaCL001_IFN_6h_2_RNA

value: IFN


title: IFNaCL001_Mock_6h_4_RNA


title: IFNaCL001_IFN_6h_1_RNA


title: IFNaCL001_Mock_6h_1_RNA


title: EIHH002_Mock_24hr_2_microRNA

source_name: IHH_mock treatment (no virus)_24 hrs

value: mock


title: EIHH002_EBOV-WT_24hr_2_microRNA


title: EIHH002_EBOV-WT_24hr_1_microRNA


title: IFNaCL001_Mock_6h_3_RNA


title: EIHH002_EBOV-WT_12hr_2_microRNA

source_name: IHH_EBOV-WT treatment_12 hrs

value: 12 hours


title: EIHH002_Mock_24hr_1_microRNA


title: EIHH002_Mock_12hr_1_microRNA

source_name: IHH_mock treatment (no virus)_12 hrs


title: EIHH002_EBOV-WT_48hr_3_microRNA


title: IFNaCL001_Mock_6h_2_RNA


title: EIHH002_Mock_12hr_3_microRNA


title: IFNaCL001_Mock_18h_4_RNA

source_name: Calu-3, mock-inoculated, 18hr, bioreplicate 4


title: EIHH002_EBOV-WT_12hr_1_microRNA


title: EIHH002_Mock_48hr_2_microRNA

source_name: IHH_mock treatment (no virus)_48 hrs


title: EIHH002_Mock_48hr_3_microRNA


title: EIHH002_Mock_12hr_2_microRNA


title: EIHH002_EBOV-WT_12hr_3_microRNA


title: EIHH002_EBOV-mucin_72hr_3_RNA

source_name: IHH_EBOV-mucin treatment_72 hrs

treatment_protocol: Cells were infected with reconstructed Ebola viruses at a multiplicity of infection of 0.5.

value: Immortalized Human Hepatocytes (IHH)

value: EBOV-mucin

value: 72 hours


title: EIHH002_EBOV-R312A_72hr_3_RNA

source_name: IHH_EBOV-R312A treatment_72 hrs


title: EIHH002_EBOV-R312A_72hr_1_RNA


title: EIHH002_EBOV-sGP_72hr_3_RNA

source_name: IHH_EBOV-sGP treatment_72 hrs

value: EBOV-sGP


title: EIHH002_EBOV-sGP_72hr_1_RNA


title: IM101_NS1-124_7d_RNA_7

source_name: Lung_NS1-124-inoculated_7 days

tag: age

value: 22 weeks

tag: time (d.p.i)

value: lung


title: EIHH002_EBOV-mucin_72hr_2_RNA


title: EIHH002_EBOV-mucin_72hr_1_RNA


title: EIHH002_EBOV-R312A_72hr_2_RNA


title: EIHH002_EBOV-WT_72hr_1_RNA

source_name: IHH_EBOV-WT treatment_72 hrs


title: EIHH002_Mock_72hr_2_RNA

source_name: IHH_mock treatment (no virus)_72 hrs


title: EIHH002_EBOV-sGP_72hr_2_RNA


title: IM101_NS1-124_7d_RNA_6

tag: tissue


title: EIHH002_Mock_72hr_1_RNA


title: EIHH002_EBOV-R312A_48hr_3_RNA

source_name: IHH_EBOV-R312A treatment_48 hrs


title: IM101_NS1-124_7d_RNA_1


title: EIHH002_EBOV-R312A_48hr_1_RNA


title: EIHH002_EBOV-R312A_48hr_2_RNA


title: IM101_NS1-124_7d_RNA_5


title: IM101_NS1-124_7d_RNA_4


title: IM101_CA04_7d_RNA_2

source_name: Lung_CA04-inoculated_7 days


title: IM101_CA04_7d_RNA_7


title: EIHH002_EBOV-WT_72hr_3_RNA


title: IM101_CA04_7d_RNA_3


title: EIHH002_EBOV-WT_72hr_2_RNA


title: EIHH002_EBOV-sGP_48hr_3_RNA

source_name: IHH_EBOV-sGP treatment_48 hrs


title: EIHH002_EBOV-mucin_48hr_1_RNA

source_name: IHH_EBOV-mucin treatment_48 hrs


title: IM101_CA04_7d_RNA_4


title: EIHH002_EBOV-mucin_48hr_2_RNA


title: IM101_CA04_7d_RNA_1


title: IM101_Mock_7d_RNA_1

source_name: Lung_mock-inoculated_7 days


title: IM101_NS1-124_4d_RNA_8

source_name: Lung_NS1-124-inoculated_4 days


title: EIHH002_EBOV-WT_48hr_2_RNA

source_name: IHH_EBOV-WT treatment_48 hrs


title: EIHH002_EBOV-WT_48hr_3_RNA


title: IM101_Mock_7d_RNA_2


title: IM101_NS1-124_4d_RNA_7


title: EIHH002_EBOV-sGP_48hr_2_RNA


title: IM101_Mock_7d_RNA_3


title: IM101_NS1-124_4d_RNA_3


title: EIHH002_Mock_48hr_2_RNA


title: EIHH002_EBOV-WT_48hr_1_RNA


title: EIHH002_EBOV-R312A_24hr_2_RNA

source_name: IHH_EBOV-R312A treatment_24 hrs


title: EIHH002_Mock_48hr_3_RNA


title: EIHH002_EBOV-sGP_48hr_1_RNA


title: IM101_NS1-124_4d_RNA_5


title: IM101_NS1-124_4d_RNA_1


title: EIHH002_EBOV-R312A_24hr_1_RNA


title: EIHH002_Mock_48hr_1_RNA


title: IM101_VN1203_4d_RNA_4

source_name: Lung_VN1203-inoculated_4 days


title: IM101_VN1203_4d_RNA_3


title: EIHH002_EBOV-mucin_24hr_2_RNA

source_name: IHH_EBOV-mucin treatment_24 hrs


title: IM101_VN1203_4d_RNA_2


title: EIHH002_EBOV-mucin_24hr_1_RNA


title: IM101_VN1203_4d_RNA_6


title: EIHH002_EBOV-mucin_24hr_3_RNA


title: IM101_VN1203_4d_RNA_1


title: EIHH002_EBOV-sGP_24hr_3_RNA

source_name: IHH_EBOV-sGP treatment_24 hrs


title: IM101_CA04_4d_RNA_3

source_name: Lung_CA04-inoculated_4 days


title: EIHH002_EBOV-sGP_24hr_1_RNA


title: IM101_CA04_4d_RNA_2


title: IM101_CA04_4d_RNA_4


title: EIHH002_EBOV-WT_24hr_2_RNA

source_name: IHH_EBOV-WT treatment_24 hrs


title: EIHH002_Mock_24hr_3_RNA

source_name: IHH_mock treatment (no virus)_24 hrs


title: IM101_Mock_4d_RNA_2

source_name: Lung_mock-inoculated_4 days


title: EIHH002_EBOV-WT_24hr_3_RNA


title: EIHH002_EBOV-R312A_12hr_3_RNA

source_name: IHH_EBOV-R312A treatment_12 hrs


title: EIHH002_Mock_24hr_2_RNA


title: IM101_Mock_4d_RNA_1


title: IM101_Mock_4d_RNA_3


title: IM101_CA04_4d_RNA_1


title: EIHH002_EBOV-R312A_12hr_1_RNA


title: EIHH002_EBOV-mucin_12hr_1_RNA

source_name: IHH_EBOV-mucin treatment_12 hrs


title: EIHH002_EBOV-mucin_12hr_3_RNA


title: IM101_VN1203_2d_RNA_6

source_name: Lung_VN1203-inoculated_2 days


title: IM101_CA04_4d_RNA_5


title: EIHH002_EBOV-WT_24hr_1_RNA


title: EIHH002_EBOV-R312A_12hr_2_RNA


title: IM101_NS1-124_2d_RNA_7

source_name: Lung_NS1-124-inoculated_2 days


title: IM101_NS1-124_2d_RNA_3


title: IM101_NS1-124_2d_RNA_5


title: IM101_NS1-124_2d_RNA_4


title: IM101_VN1203_2d_RNA_4


title: IM101_NS1-124_2d_RNA_2


title: EIHH002_Mock_24hr_1_RNA


title: EIHH002_EBOV-sGP_12hr_3_RNA

source_name: IHH_EBOV-sGP treatment_12 hrs


title: EIHH002_EBOV-sGP_12hr_2_RNA


title: IM101_VN1203_2d_RNA_3


title: IM101_CA04_2d_RNA_6

source_name: Lung_CA04-inoculated_2 days


title: IM101_VN1203_2d_RNA_2


title: IM101_VN1203_2d_RNA_1


title: EIHH002_EBOV-WT_12hr_2_RNA

source_name: IHH_EBOV-WT treatment_12 hrs


title: IM101_CA04_2d_RNA_4


title: EIHH002_Mock_12hr_3_RNA

source_name: IHH_mock treatment (no virus)_12 hrs


title: EIHH002_EBOV-R312A_6hr_3_RNA

source_name: IHH_EBOV-R312A treatment_6 hrs

value: 6 hours


title: EIHH002_Mock_12hr_1_RNA


title: IM101_CA04_2d_RNA_3


title: EIHH002_Mock_12hr_2_RNA


title: IM101_Mock_2d_RNA_3

source_name: Lung_mock-inoculated_2 days


title: EIHH002_EBOV-mucin_6hr_3_RNA

source_name: IHH_EBOV-mucin treatment_6 hrs


title: IM101_CA04_2d_RNA_1


title: EIHH002_EBOV-R312A_6hr_2_RNA


title: EIHH002_EBOV-mucin_6hr_2_RNA


title: EIHH002_EBOV-R312A_6hr_1_RNA


title: IM101_CA04_2d_RNA_2


title: EIHH002_EBOV-sGP_6hr_3_RNA

source_name: IHH_EBOV-sGP treatment_6 hrs


title: IM101_NS1-124_1d_RNA_7

source_name: Lung_NS1-124-inoculated_1 day


title: EIHH002_EBOV-sGP_6hr_2_RNA


title: IM101_Mock_2d_RNA_1


title: EIHH002_EBOV-WT_12hr_3_RNA


title: EIHH002_EBOV-mucin_6hr_1_RNA


title: IM101_NS1-124_1d_RNA_3


title: IM101_Mock_2d_RNA_2


title: IM101_NS1-124_1d_RNA_8


title: EIHH002_EBOV-sGP_6hr_1_RNA


title: IM101_NS1-124_1d_RNA_2


title: EIHH002_EBOV-WT_6hr_2_RNA

source_name: IHH_EBOV-WT treatment_6 hrs


title: EIHH002_EBOV-WT_6hr_1_RNA


title: IM101_VN1203_1d_RNA_7

source_name: Lung_VN1203-inoculated_1 day


title: IM101_NS1-124_1d_RNA_1


title: EIHH002_Mock_6hr_3_RNA

source_name: IHH_mock treatment (no virus)_6 hrs


title: IM101_VN1203_1d_RNA_6


title: EIHH002_Mock_6hr_2_RNA


title: IM101_VN1203_1d_RNA_1


title: EIHH002_Mock_6hr_1_RNA


title: EIHH002_EBOV-R312A_0hr_3_RNA

source_name: IHH_EBOV-R312A treatment_0 hrs

value: 0 hours


title: IM101_CA04_1d_RNA_5

source_name: Lung_CA04-inoculated_1 day


title: EIHH002_EBOV-mucin_0hr_3_RNA

source_name: IHH_EBOV-mucin treatment_0 hrs


title: IM101_VN1203_1d_RNA_5


title: IM101_VN1203_1d_RNA_3


title: EIHH002_EBOV-R312A_0hr_2_RNA


title: IM101_CA04_1d_RNA_4


title: IM101_CA04_1d_RNA_3


title: EIHH002_EBOV-mucin_0hr_2_RNA


title: EIHH002_Mock_72hr_3_RNA

source_name: IHH_mock treatment (no virus)_72 hrs


title: IM101_Mock_1d_RNA_2

source_name: Lung_mock-inoculated_1 day


title: IM101_Mock_1d_RNA_3


title: EIHH002_EBOV-R312A_0hr_1_RNA


title: EIHH002_EBOV-sGP_24hr_2_RNA

source_name: IHH_EBOV-sGP treatment_24 hrs


title: IM101_CA04_1d_RNA_1


title: IM101_NS1-124_4d_microRNA_8

source_name: Lung_NS1-124-inoculated_4 days


title: IM101_NS1-124_4d_microRNA_7


title: IM101_NS1-124_4d_microRNA_5


title: IM101_VN1203_4d_microRNA_6

source_name: Lung_VN1203-inoculated_4 days


title: IM101_NS1-124_4d_microRNA_3


title: IM101_VN1203_4d_microRNA_2


title: IM101_Mock_1d_RNA_1


title: IM101_VN1203_4d_microRNA_4


title: IM101_VN1203_4d_microRNA_1


title: IM101_CA04_4d_microRNA_5

source_name: Lung_CA04-inoculated_4 days


title: IM101_CA04_4d_microRNA_4


title: IM101_CA04_4d_microRNA_2


title: IM101_CA04_4d_microRNA_1


title: IM101_CA04_4d_microRNA_3


title: IM101_VN1203_4d_microRNA_3


title: EIHH002_EBOV-mucin_0hr_1_RNA


title: IM101_Mock_4d_microRNA_3

source_name: Lung_mock-inoculated_4 days


title: EIHH002_EBOV-sGP_0hr_2_RNA

source_name: IHH_EBOV-sGP treatment_0 hrs


title: IM101_CA04_1d_RNA_2


title: IM101_Mock_4d_microRNA_2


title: IM101_NS1-124_4d_microRNA_1


title: IM101_Mock_4d_microRNA_1


title: IM101_NS1-124_2d_microRNA_4

source_name: Lung_NS1-124-inoculated_2 days


title: IM101_NS1-124_2d_microRNA_5


title: IM101_NS1-124_2d_microRNA_2


title: IM101_NS1-124_2d_microRNA_3


title: IM101_VN1203_2d_microRNA_6

source_name: Lung_VN1203-inoculated_2 days


title: IM101_VN1203_2d_microRNA_4


title: IM101_VN1203_2d_microRNA_1


title: IM101_VN1203_2d_microRNA_2


title: IM101_CA04_2d_microRNA_4

source_name: Lung_CA04-inoculated_2 days


title: EIHH002_EBOV-sGP_0hr_1_RNA


title: IM101_CA04_2d_microRNA_3


title: EIHH002_Mock_0hr_3_RNA

source_name: IHH_mock treatment (no virus)_0 hrs


title: IM101_CA04_2d_microRNA_2


title: IM101_CA04_2d_microRNA_1


title: EIHH002_EBOV-WT_0hr_2_RNA

source_name: IHH_EBOV-WT treatment_0 hrs


title: IM101_Mock_2d_microRNA_3

source_name: Lung_mock-inoculated_2 days


title: IM101_NS1-124_2d_microRNA_7


title: EIHH002_EBOV-sGP_0hr_3_RNA


title: IM101_Mock_2d_microRNA_1


title: IM101_Mock_2d_microRNA_2


title: EIHH002_EBOV-WT_0hr_3_RNA


title: EIHH002_Mock_0hr_1_RNA


title: EIHH002_EBOV-WT_0hr_1_RNA


title: EIHH002_Mock_0hr_2_RNA


title: Wild type littermate for MPI 118Q/118Q knockin, replicate 1

status: Public on Jun 14 2015

city: Bunkyo-ku

first: Kaoru

last: Mogushi

state: Tokyo

address: 2-1-1 Hongo

department: Intractable Disease Research Center

country: Japan

institute: Juntendo University

description: Gene expression profile of mouse cerebellum

hyb_protocol: Hybridization and signal detection of Mouse Genome 430 2.0 arrays (Affymetrix) was performed following the manufacturer's instruction using the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using Affymetrix GeneChip Scanner 3000.

data_processing: The data was normalized by robust multichip analysis (RMA) using justRMA function in R/Bioconductor.

source_name: cerebellum

label_protocol: cRNA was prepared using one-cycle target labeling and control reagents kit (Affymetrix, Santa Clara, CA).

extract_protocol: Total RNA was extracted from tissue specimens using RNeasy kit (Qiagen, Hilden, Germany). Integrity of obtained RNA was assessed using Agilent 2100 BioAnalyzer (Agilent Technologies, Palo Alto, CA). All samples had RNA Integrity Number (RIN) greater than 5.0. Contaminant DNA was removed by digestion with RNase-free DNase (Qiagen).

treatment_protocol: The wild type, MPI 118Q/118Q and MPI 11Q/11Q mice (n = 3 in each group) were used.

tag: genotype

value: MPI 118Q-WT

value: cerebellum

tag: genetic background


title: MPI 118Q/118Q knockin mouse, replicate 2

value: MPI 118Q-KI


title: ICL102_F/M_24hr_RNA_1034

status: Public on May 20 2015

extract_protocol: TCL001.0P: Preparation of Samples from Calu-3 cells for Isolation of RNA.

treatment_protocol: Cells were washed twice with PBS and infected with a multiplicity of infection of 1.

tag: infected with

tag: time point

value: 24h post-infection


title: MPI 118Q/118Q knockin mouse, replicate 3


title: Wild type littermate for MPI 11Q/11Q knockin, replicate 3

value: MPI 11Q-WT


title: IM101_VN1203_2d_microRNA_3


title: ICL102_691_24hr_RNA_1039

value: AH1 - 691 (ferret adapted virus)


title: Wild type littermate for MPI 11Q/11Q knockin, replicate 2


title: MPI 11Q/11Q knockin mouse, replicate 3

value: MPI 11Q-KI


title: MPI 118Q/118Q knockin mouse, replicate 1


title: MPI 11Q/11Q knockin mouse, replicate 1


title: Wild type littermate for MPI 118Q/118Q knockin, replicate 3


title: Wild type littermate for MPI 11Q/11Q knockin, replicate 1


title: ICL102_691_24hr_RNA_1037


title: ICL102_691_24hr_RNA_1036


title: Wild type littermate for MPI 118Q/118Q knockin, replicate 2


title: ICL102_AH1_24hr_RNA_1027


title: ICL102_F/M_24hr_RNA_1032


title: ICL102_AH1_24hr_RNA_1028


title: MPI 11Q/11Q knockin mouse, replicate 2


title: ICL102_F/M_24hr_RNA_1033


title: ICL102_F/M_24hr_RNA_1031


title: ICL102_Mock_24hr_RNA_1024

value: none (mock control)


title: ICL102_AH1_24hr_RNA_1026


title: ICL102_AH1_24hr_RNA_1029


title: ICL102_691_12hr_RNA_647

value: 12h post-infection


title: ICL102_Mock_24hr_RNA_1022


title: ICL102_691_24hr_RNA_1038


title: ICL102_Mock_24hr_RNA_1023


title: ICL102_Mock_24hr_RNA_1021


title: ICL102_F/M_12hr_RNA_640


title: ICL102_691_12hr_RNA_646


title: ICL102_691_12hr_RNA_645


title: ICL102_F/M_12hr_RNA_639


title: ICL102_691_12hr_RNA_644


title: ICL102_Mock_12hr_RNA_630


title: ICL102_Mock_12hr_RNA_631


title: ICL102_AH1_12hr_RNA_635


title: ICL102_691_7hr_RNA_450

value: 7h post-infection


title: ICL102_F/M_7hr_RNA_445


title: ICL102_AH1_12hr_RNA_636


title: ICL102_Mock_12hr_RNA_629


title: ICL102_F/M_12hr_RNA_641


title: ICL102_Mock_12hr_RNA_632


title: ICL102_AH1_7hr_RNA_441


title: ICL102_Mock_7hr_RNA_434


title: ICL102_AH1_7hr_RNA_440


title: ICL102_F/M_7hr_RNA_443


title: ICL102_AH1_12hr_RNA_634


title: ICL102_691_7hr_RNA_448


title: ICL102_691_7hr_RNA_449


title: ICL102_Mock_7hr_RNA_435


title: ICL102_F/M_7hr_RNA_444


title: ICL102_691_7hr_RNA_451


title: ICL102_AH1_7hr_RNA_439


title: ICL102_AH1_7hr_RNA_438


title: ICL102_F/M_7hr_RNA_446


title: ICL102_Mock_7hr_RNA_436


title: ICL102_F/M_12hr_RNA_642 [miRNA]

value: 12hrs post-infection

tag: replicate


title: ICL102_F/M_12hr_RNA_640 [miRNA]


title: ICL102_691_0hr_RNA_59

value: 0h post-infection


title: ICL102_AH1_0hr_RNA_48


title: ICL102_F/M_12hr_RNA_639 [miRNA]


title: ICL102_F/M_0hr_RNA_53


title: ICL102_AH1_12hr_RNA_637 [miRNA]


title: ICL102_AH1_12hr_RNA_636 [miRNA]


title: ICL102_691_0hr_RNA_57


title: ICL102_AH1_12hr_RNA_635 [miRNA]


title: ICL102_Mock_12hr_RNA_631 [miRNA]


title: ICL102_Mock_12hr_RNA_632 [miRNA]


title: ICL102_Mock_12hr_RNA_630 [miRNA]


title: ICL102_AH1_12hr_RNA_634 [miRNA]


title: ICL102_691_0hr_RNA_56


title: ICL102_F/M_0hr_RNA_52


title: ICL102_Mock_0hr_RNA_43


title: ICL102_F/M_0hr_RNA_54


title: ICL102_AH1_0hr_RNA_47


title: ICL102_F/M_0hr_RNA_51


title: ICL102_AH1_0hr_RNA_46


title: ICL102_Mock_0hr_RNA_42


title: ICL102_Mock_0hr_RNA_41


title: ICL102_F/M_7hr_RNA_446 [miRNA]

value: 7hrs post-infection


title: ICL102_Mock_12hr_RNA_629 [miRNA]


title: ICL102_Mock_0hr_RNA_44


title: ICL102_F/M_7hr_RNA_445 [miRNA]


title: ICL102_F/M_12hr_RNA_641 [miRNA]


title: ICL102_AH1_12hr_RNA_637


title: ICL102_F/M_7hr_RNA_444 [miRNA]


title: ICL102_F/M_7hr_RNA_443 [miRNA]


title: ICL102_AH1_7hr_RNA_441 [miRNA]


title: ICL102_AH1_7hr_RNA_439 [miRNA]


title: ICL102_AH1_7hr_RNA_440 [miRNA]


title: ICL102_Mock_7hr_RNA_436 [miRNA]


title: ICL102_AH1_7hr_RNA_438 [miRNA]


title: ICL102_Mock_7hr_RNA_435 [miRNA]


title: ICL102_Mock_7hr_RNA_434 [miRNA]


title: ICL102_Mock_7hr_RNA_433 [miRNA]


title: IM102_691_7d_RNA_4

status: Public on May 16 2015

data_processing: Scanned images were analyzed using Agilent Feature Extraction Software (v11.0.1.1). The limma package for R (available on Bioconductor) was used to perform background correction, quantile normalization (normalizeBetweenArrays), and summarization (avereps) to derive a single normalized intensity value per probe. Outlier samples were detected using PCA and by visual inspection of heatmaps, and all data was re-processed after removing outlier samples. All data processing for each of the two biological replicates was performed independently of the other.

source_name: Lung tissue, 691-inoculated, 7 day(s), bioreplicate 4

extract_protocol: Total RNA was isolated from Trizol.

value: 22 weeks

tag: time (d.p.i.)


title: IM102_F/M_7d_RNA_6

source_name: Lung tissue, FM-inoculated, 7 day(s), bioreplicate 6

value: lung

value: FM


title: IM102_AH1_7d_RNA_3

source_name: Lung tissue, AH-1-inoculated, 7 day(s), bioreplicate 3


title: IM102_F/M_7d_RNA_4

source_name: Lung tissue, FM-inoculated, 7 day(s), bioreplicate 4


title: IM102_AH1_7d_RNA_1

source_name: Lung tissue, AH-1-inoculated, 7 day(s), bioreplicate 1


title: IM102_691_7d_RNA_3

source_name: Lung tissue, 691-inoculated, 7 day(s), bioreplicate 3


title: IM102_AH1_7d_RNA_5

source_name: Lung tissue, AH-1-inoculated, 7 day(s), bioreplicate 5


title: ICL102_F/M_12hr_RNA_642


title: IM102_Mock_7d_RNA_4

source_name: Lung tissue, mock-inoculated, 7 day(s), bioreplicate 3

value: mockulum


title: IM102_691_7d_RNA_2

source_name: Lung tissue, 691-inoculated, 7 day(s), bioreplicate 2


title: IM102_691_4d_RNA_3

source_name: Lung tissue, 691-inoculated, 4 day(s), bioreplicate 3


title: IM102_AH1_7d_RNA_6

source_name: Lung tissue, AH-1-inoculated, 7 day(s), bioreplicate 6


title: IM102_F/M_7d_RNA_3

source_name: Lung tissue, FM-inoculated, 7 day(s), bioreplicate 3


title: IM102_F/M_4d_RNA_6

source_name: Lung tissue, FM-inoculated, 4 day(s), bioreplicate 6


title: IM102_Mock_7d_RNA_3

source_name: Lung tissue, mock-inoculated, 7 day(s), bioreplicate 2


title: IM102_691_4d_RNA_2

source_name: Lung tissue, 691-inoculated, 4 day(s), bioreplicate 2


title: IM102_F/M_7d_RNA_2

source_name: Lung tissue, FM-inoculated, 7 day(s), bioreplicate 2


title: IM102_691_4d_RNA_5

source_name: Lung tissue, 691-inoculated, 4 day(s), bioreplicate 5


title: IM102_691_4d_RNA_6

source_name: Lung tissue, 691-inoculated, 4 day(s), bioreplicate 6


title: IM102_F/M_4d_RNA_5

source_name: Lung tissue, FM-inoculated, 4 day(s), bioreplicate 5


title: IM102_AH1_7d_RNA_2

source_name: Lung tissue, AH-1-inoculated, 7 day(s), bioreplicate 2


title: IM102_AH1_4d_RNA_3

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 3


title: IM102_AH1_4d_RNA_6

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 6


title: IM102_AH1_4d_RNA_8

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 8


title: IM102_Mock_7d_RNA_1

source_name: Lung tissue, mock-inoculated, 7 day(s), bioreplicate 1


title: IM102_F/M_4d_RNA_7

source_name: Lung tissue, FM-inoculated, 4 day(s), bioreplicate 7


title: IM102_691_4d_RNA_4

source_name: Lung tissue, 691-inoculated, 4 day(s), bioreplicate 4


title: IM102_AH1_4d_RNA_5

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 5


title: IM102_F/M_4d_RNA_2

source_name: Lung tissue, FM-inoculated, 4 day(s), bioreplicate 2


title: IM102_AH1_4d_RNA_2

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 2


title: IM102_691_2d_RNA_6

source_name: Lung tissue, 691-inoculated, 2 day(s), bioreplicate 6


title: IM102_691_2d_RNA_3

source_name: Lung tissue, 691-inoculated, 2 day(s), bioreplicate 3


title: IM102_AH1_2d_RNA_3

source_name: Lung tissue, AH-1-inoculated, 2 day(s), bioreplicate 3


title: IM102_Mock_2d_RNA_3

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 3


title: IM102_F/M_2d_RNA_3

source_name: Lung tissue, FM-inoculated, 2 day(s), bioreplicate 3


title: IM102_Mock_4d_RNA_1

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 1


title: IM102_AH1_2d_RNA_2

source_name: Lung tissue, AH-1-inoculated, 2 day(s), bioreplicate 2


title: IM102_Mock_4d_RNA_3

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 3


title: IM102_691_2d_RNA_4

source_name: Lung tissue, 691-inoculated, 2 day(s), bioreplicate 4


title: IM102_F/M_2d_RNA_5

source_name: Lung tissue, FM-inoculated, 2 day(s), bioreplicate 5


title: IM102_Mock_4d_RNA_2

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 2


title: IM102_F/M_2d_RNA_2

source_name: Lung tissue, FM-inoculated, 2 day(s), bioreplicate 2


title: IM102_F/M_2d_RNA_4

source_name: Lung tissue, FM-inoculated, 2 day(s), bioreplicate 4


title: IM102_F/M_2d_RNA_1

source_name: Lung tissue, FM-inoculated, 2 day(s), bioreplicate 1


title: IM102_Mock_2d_RNA_2

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 2


title: IM102_AH1_2d_RNA_1

source_name: Lung tissue, AH-1-inoculated, 2 day(s), bioreplicate 1


title: IM102_691_2d_RNA_2

source_name: Lung tissue, 691-inoculated, 2 day(s), bioreplicate 2


title: IM102_691_1d_RNA_5

source_name: Lung tissue, 691-inoculated, 1 day(s), bioreplicate 5


title: IM102_691_2d_RNA_5

source_name: Lung tissue, 691-inoculated, 2 day(s), bioreplicate 5


title: IM102_F/M_1d_RNA_8

source_name: Lung tissue, FM-inoculated, 1 day(s), bioreplicate 8


title: IM102_691_1d_RNA_6

source_name: Lung tissue, 691-inoculated, 1 day(s), bioreplicate 6


title: IM102_691_1d_RNA_4

source_name: Lung tissue, 691-inoculated, 1 day(s), bioreplicate 4


title: IM102_Mock_2d_RNA_1

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 1


title: IM102_691_1d_RNA_3

source_name: Lung tissue, 691-inoculated, 1 day(s), bioreplicate 3


title: IM102_691_1d_RNA_2

source_name: Lung tissue, 691-inoculated, 1 day(s), bioreplicate 2


title: IM102_F/M_1d_RNA_4

source_name: Lung tissue, FM-inoculated, 1 day(s), bioreplicate 4


title: IM102_Lung_F/M_4d_miRNA_5

source_name: Lung tissue, FM-inoculated, 4 day(s), bioreplicate 5

tag: time


title: IM102_Lung_F/M_4d_miRNA_2

source_name: Lung tissue, FM-inoculated, 4 day(s), bioreplicate 2


title: IM102_Lung_F/M_4d_miRNA_7

source_name: Lung tissue, FM-inoculated, 4 day(s), bioreplicate 7


title: IM102_Lung_F/M_4d_miRNA_6

source_name: Lung tissue, FM-inoculated, 4 day(s), bioreplicate 6


title: IM102_F/M_1d_RNA_3

source_name: Lung tissue, FM-inoculated, 1 day(s), bioreplicate 3


title: IM102_Lung_AH1_4d_miRNA_8

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 8


title: IM102_Lung_F/M_4d_miRNA_1

source_name: Lung tissue, FM-inoculated, 4 day(s), bioreplicate 1


title: IM102_AH1_1d_RNA_5

source_name: Lung tissue, AH-1-inoculated, 1 day(s), bioreplicate 5


title: IM102_F/M_1d_RNA_1

source_name: Lung tissue, FM-inoculated, 1 day(s), bioreplicate 1


title: IM102_Lung_AH1_4d_miRNA_3

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 3


title: IM102_Lung_AH1_4d_miRNA_6

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 6


title: IM102_Lung_AH1_4d_miRNA_5

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 5


title: IM102_Lung_AH1_4d_miRNA_2

source_name: Lung tissue, AH-1-inoculated, 4 day(s), bioreplicate 2


title: IM102_AH1_1d_RNA_3

source_name: Lung tissue, AH-1-inoculated, 1 day(s), bioreplicate 3


title: IM102_Lung_Mock_4d_miRNA_3

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 3

value: Mock


title: IM102_AH1_1d_RNA_2

source_name: Lung tissue, AH-1-inoculated, 1 day(s), bioreplicate 2


title: IM102_Lung_Mock_4d_miRNA_1

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 1


title: IM102_Lung_F/M_2d_miRNA_5

source_name: Lung tissue, FM-inoculated, 2 day(s), bioreplicate 8


title: IM102_Lung_Mock_4d_miRNA_2

source_name: Lung tissue, mock-inoculated, 4 day(s), bioreplicate 2


title: IM102_Lung_F/M_2d_miRNA_3

source_name: Lung tissue, FM-inoculated, 2 day(s), bioreplicate 3


title: IM102_Mock_1d_RNA_2

source_name: Lung tissue, mock-inoculated, 1 day(s), bioreplicate 2


title: IM102_Lung_AH1_2d_miRNA_3

source_name: Lung tissue, AH-1-inoculated, 2 day(s), bioreplicate 3


title: IM102_Lung_AH1_2d_miRNA_2

source_name: Lung tissue, AH-1-inoculated, 2 day(s), bioreplicate 2


title: IM102_Lung_F/M_2d_miRNA_1

source_name: Lung tissue, FM-inoculated, 2 day(s), bioreplicate 1


title: IM102_Lung_Mock_2d_miRNA_1

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 1


title: IM102_Lung_Mock_2d_miRNA_2

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 2


title: IM102_Lung_AH1_2d_miRNA_1

source_name: Lung tissue, AH-1-inoculated, 2 day(s), bioreplicate 1


title: IM102_Lung_Mock_2d_miRNA_3

source_name: Lung tissue, mock-inoculated, 2 day(s), bioreplicate 3


title: IM102_F/M_1d_RNA_2

source_name: Lung tissue, FM-inoculated, 1 day(s), bioreplicate 2


title: IM102_Mock_1d_RNA_3

source_name: Lung tissue, mock-inoculated, 1 day(s), bioreplicate 3


title: IM102_AH1_1d_RNA_4

source_name: Lung tissue, AH-1-inoculated, 1 day(s), bioreplicate 4


title: IM102_AH1_1d_RNA_1

source_name: Lung tissue, AH-1-inoculated, 1 day(s), bioreplicate 1


title: IM102_Mock_1d_RNA_1

source_name: Lung tissue, mock-inoculated, 1 day(s), bioreplicate 1


title: IM102_Lung_F/M_2d_miRNA_2

source_name: Lung tissue, FM-inoculated, 2 day(s), bioreplicate 2


title: U112 rep 3

status: Public on May 02 2015

city: Hannibal

first: Siva

middle: Tej

last: Sarva

state: Missouri

address: 6500 Hospital Dr

department: Division of Pulmonary Critical Care

institute: Hannibal Regional Medical Group

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.17

hyb_protocol: Following fragmentation, cDNA was hybridized for 16 hr at 45C on custom Nimble Express Affymetrix microarray. The microarrays were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Genechip Scanner 3000 (Affymetrix).

data_processing: Data was scaled using GCOS (Affymetrix) to a mean intensity of 1000 using the Francisella Traditional Probe Sets (please see annotation files for details) as a scaling mask

organism: Francisella tularensis subsp. novicida U112

source_name: Francisella tularensis novicida U112 at O.D. 0.6

label_protocol: Biotinylated cDNA were prepared according to the Affymetrix standard prokaryotic protocol.

growth_protocol: All the strains of Francisella were grown to optical density of 0.6 in a chemical defined medium (Chamberlain medium). Schu4 and OR960246 were grown in BSL3 conditions. LVS and U112 were grown in conditions similar to those of the virulent strains in BSL2 conditions.

extract_protocol: Total RNA isolated using TRIZOL (Invitrogen) and DNase treated using Turbo DNA-free (Ambion) according to manufacture instructions.

treatment_protocol: Cell cultures of the strains were grown to to an optical density of 0.6 and cell pellets were obtained and immediately placed in TRIZOL (invitrogen) solution.

tag: medium of growth

value: Chamberlain


title: U112 rep 2

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.16


title: Schu4 rep 3

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.14

organism: Francisella tularensis subsp. tularensis SCHU S4

source_name: Francisella tularensis tularemia Schu4 at O.D. 0.6


title: LVS rep 2

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.7

organism: Francisella tularensis subsp. holarctica LVS

source_name: Francisella tularensis holarctica LVS at O.D. 0.6


title: U112 rep 1

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.15


title: LVS rep 1

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.6


title: Schu4 rep 1

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.12


title: LVS rep 3

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.8


title: WGCN003_WNVE218A_24h_2_mRNA

status: Public on Apr 29 2015

source_name: Primary granule cell neurons, WNVE218A-inoculated, 24 hour(s), bioreplicate 2, technical replicate 2

growth_protocol: Mouse neonatal brain was taken from day 6 C57Bl/6J mouse pups. After removing meninges and choroid plexus, cerebellar tissue was dissociated, filtered and plated in neurobasal medium (with B27 supplement, Glutamax and penicillin/streptomycin) at a density of 5 x 10^5 cells/well in a poly-D-lysine coated 24-well dish. Two days after plating (D1), cell medium was replaced with fresh medium.

treatment_protocol: On day 4, triplicate technical replicates of granule cell neurons were mock-inoculated or inoculated with plasmid-derived wild type West Nile virus NY99 clone 382 (WNVWT) or a plasmid-derived isogenic E218A mutant West Nile virus NY99 clone 382 (WNVE218A). After 1 hr of infection at 37C, virus inoculum was removed. Neurons were then cultured for 0-23 additional hours at 37C. At 1, 8, 12 and 24 hours after inoculation medium was removed and RNA harvested from adherent neurons using Trizol.

value: day 6

tag: developmental stage

value: neonatal


title: WGCN003_WNVE218A_12h_3_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 12 hour(s), bioreplicate 2, technical replicate 3

tag: strain


title: Schu4 rep 2

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.13


title: WGCN003_WNVE218A_24h_3_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 24 hour(s), bioreplicate 2, technical replicate 3


title: OR960246 rep 2

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.10

organism: Francisella tularensis subsp. holarctica OR96246

source_name: Francisella tularensis holarctica OR960246 at O.D. 0.6


title: WGCN003_WNVE218A_1h_2_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 1 hour(s), bioreplicate 2, technical replicate 2


title: WGCN003_WNVE218A_8h_3_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 8 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_WNVE218A_1h_3_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 1 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_WNVE218A_12h_1_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 12 hour(s), bioreplicate 2, technical replicate 1


title: WGCN003_WNVWT_24h_2_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 24 hour(s), bioreplicate 2, technical replicate 2

value: WNVWT


title: WGCN003_WNVE218A_8h_2_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 8 hour(s), bioreplicate 2, technical replicate 2


title: OR960246 rep 1

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.9


title: WGCN003_WNVE218A_24h_1_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 24 hour(s), bioreplicate 2, technical replicate 1


title: WGCN003_WNVE218A_8h_1_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 8 hour(s), bioreplicate 2, technical replicate 1


title: WGCN003_WNVWT_24h_1_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 24 hour(s), bioreplicate 2, technical replicate 1


title: WGCN003_WNVE218A_1h_1_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 1 hour(s), bioreplicate 2, technical replicate 1


title: OR960246 rep 3

description: Gene expression data of bacteria grown in chemically defined medium(Chamberlain) grown to O.D. 0.11


title: WGCN003_WNVE218A_12h_2_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 12 hour(s), bioreplicate 2, technical replicate 2


title: WGCN003_WNVWT_12h_1_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 12 hour(s), bioreplicate 2, technical replicate 1


title: WGCN003_WNVWT_12h_2_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 12 hour(s), bioreplicate 2, technical replicate 2


title: WGCN003_WNVWT_12h_3_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 12 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_WNVWT_24h_3_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 24 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_WNVWT_8h_3_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 8 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_WNVWT_1h_2_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 1 hour(s), bioreplicate 2, technical replicate 2


title: WGCN003_mock_24h_3_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 24 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_WNVWT_8h_2_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 8 hour(s), bioreplicate 2, technical replicate 2


title: WGCN003_WNVWT_1h_1_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 1 hour(s), bioreplicate 2, technical replicate 1


title: WGCN003_mock_24h_1_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 24 hour(s), bioreplicate 2, technical replicate 1


title: WGCN003_WNVWT_1h_3_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 1 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_mock_12h_3_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 12 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_mock_12h_1_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 12 hour(s), bioreplicate 2, technical replicate 1


title: WGCN003_mock_8h_3_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 8 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_mock_12h_2_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 12 hour(s), bioreplicate 2, technical replicate 2


title: WGCN003_mock_24h_2_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 24 hour(s), bioreplicate 2, technical replicate 2


title: WGCN003_mock_8h_2_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 8 hour(s), bioreplicate 2, technical replicate 2


title: WGCN003_mock_1h_3_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 1 hour(s), bioreplicate 2, technical replicate 3


title: WGCN003_mock_8h_1_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 8 hour(s), bioreplicate 2, technical replicate 1


title: WGCN002_WNVE218A_12h_2_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 12 hour(s), bioreplicate 1, technical replicate 2


title: WGCN003_mock_1h_2_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 1 hour(s), bioreplicate 2, technical replicate 2


title: WGCN002_WNVWT_24h_1_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 24 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_WNVE218A_1h_1_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 1 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_WNVE218A_12h_3_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 12 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_WNVE218A_24h_2_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 24 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_WNVE218A_1h_2_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 1 hour(s), bioreplicate 1, technical replicate 2


title: WGCN003_mock_1h_1_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 1 hour(s), bioreplicate 2, technical replicate 1


title: WGCN002_WNVE218A_24h_1_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 24 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_WNVE218A_1h_3_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 1 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_WNVWT_12h_2_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 12 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_WNVWT_12h_1_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 12 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_WNVWT_24h_2_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 24 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_WNVE218A_8h_3_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 8 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_WNVE218A_8h_2_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 8 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_WNVWT_24h_3_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 24 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_WNVE218A_12h_1_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 12 hour(s), bioreplicate 1, technical replicate 1


title: WGCN003_WNVE218A_12h_2_microRNA

hyb_protocol: Sample labeling and array hybridization were performed according to the Agilent miRNA Complete Labeling and Hyb Kit protocol (Agilent Technology). Briefly, 500 ng of total RNA from each sample was labeled with Cy3-pCp. Labeled RNA was mixed with 4.5 μL 10 × Blocking Agent and 22.5 μL of 2X Hi-RPM Hybridization Buffer, heated at 100°C for 5 minutes, and then immediately transfered to an ice water bath for 5 minutes. All of the volume of the hybridization sample was dispensed into the gasket slide and assembled to the miRNA expression microarray slide. The slides were incubated for 55°C for 20 hours in an Agilent Hybridization Oven.

scan_protocol: The hybridized arrays were washed, fixed and scanned with Agilent DNA Microarray Scanner (part number G2505C).

source_name: Primary granule cell neurons, WNVE218A-inoculated, 12 hour(s), bioreplicate 1, technical replicate 2

label_protocol: Total RNA from each sample was labeled using miRNA Complete Labeling and Hyb Kit (v2.4, Agilent Technologies)


title: WGCN002_WNVWT_12h_3_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 12 hour(s), bioreplicate 1, technical replicate 3


title: WGCN003_WNVE218A_12h_3_microRNA


title: WGCN002_WNVWT_8h_3_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 8 hour(s), bioreplicate 1, technical replicate 3


title: WGCN003_WNVWT_12h_3_microRNA


title: WGCN003_WNVWT_12h_2_microRNA


title: WGCN003_WNVE218A_12h_1_microRNA


title: WGCN003_mock_12h_3_microRNA

source_name: Primary granule cell neurons, mock-inoculated, 12 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_WNVWT_8h_2_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 8 hour(s), bioreplicate 1, technical replicate 2


title: WGCN003_WNVWT_12h_1_microRNA


title: WGCN002_WNVWT_1h_2_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 1 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_WNVWT_8h_1_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 8 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_mock_24h_3_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 24 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_WNVE218A_12h_2_microRNA


title: WGCN002_WNVE218A_24h_3_mRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 24 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_WNVE218A_12h_3_microRNA

source_name: Primary granule cell neurons, WNVE218A-inoculated, 12 hour(s), bioreplicate 1, technical replicate 3


title: WGCN003_mock_12h_1_microRNA

source_name: Primary granule cell neurons, mock-inoculated, 12 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_WNVWT_12h_3_microRNA


title: WGCN003_mock_12h_2_microRNA

source_name: Primary granule cell neurons, mock-inoculated, 12 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_mock_24h_1_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 24 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_WNVWT_12h_1_microRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 12 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_mock_24h_2_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 24 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_mock_12h_2_microRNA


title: WGCN002_mock_12h_2_mRNA


title: WGCN002_mock_12h_1_microRNA


title: WGCN002_mock_12h_1_mRNA


title: WGCN002_WNVWT_12h_2_microRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 12 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_mock_8h_2_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 8 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_WNVWT_1h_1_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 1 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_mock_8h_3_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 8 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_mock_8h_1_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 8 hour(s), bioreplicate 1, technical replicate 1


title: WGCN002_mock_1h_2_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 1 hour(s), bioreplicate 1, technical replicate 2


title: WGCN002_mock_1h_3_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 1 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_WNVWT_1h_3_mRNA

source_name: Primary granule cell neurons, WNVWT-inoculated, 1 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_mock_12h_3_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 12 hour(s), bioreplicate 1, technical replicate 3


title: WGCN002_mock_12h_3_microRNA


title: WCN003_WNVE218A_24h_3_mRNA

status: Public on Apr 04 2015

source_name: Primary cortical neurons, inoculated with WNVE218A, 24 hour(s), bioreplicate 2, technical replicate 3

growth_protocol: Mouse fetal brain was taken from C57Bl/6J mouse embryos at E15. After removing meninges, cortical tissue was dissociated, filtered and plated in neurobasal medium (with B27 supplement, Glutamax and penicillin/streptomycin) at a density of 5 x 105 cells/well in a poly-D-lysine and laminin coated 24-well dish. Three days after plating (D2), cell medium was replaced with fresh medium.

treatment_protocol: On day 4, triplicate technical replicates of cortical neurons were mock-inoculated or inoculated with plasmid-derived wild type West Nile virus NY99 clone 382 (WNVWT) or a plasmid-derived isogenic E218A mutant West Nile virus NY99 clone 382 (WNVE218A). After 1 hr of infection at 37oC, virus inoculum was removed. Neurons were then cultured for 0-23 additional hours at 37oC. At 1, 8, 12 and 24 hours after inoculation medium was removed and RNA harvested from adherent neurons using Trizol.

tag: embryonic stage

value: embryo

value: brain


title: WCN003_WNVE218A_12h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 12 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_WNVE218A_8h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 8 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_WNVE218A_1h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 1 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_WNVE218A_1h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 1 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_WNVE218A_8h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 8 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_WNVE218A_8h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 8 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_WNVE218A_24h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 24 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_WNVE218A_12h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 12 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_WNVE218A_24h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 24 hour(s), bioreplicate 2, technical replicate 1


title: WGCN002_mock_1h_1_mRNA

source_name: Primary granule cell neurons, mock-inoculated, 1 hour(s), bioreplicate 1, technical replicate 1


title: WCN003_WNVE218A_1h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 1 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_WNVWT_24h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 24 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_WNVWT_24h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 24 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_WNVWT_24h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 24 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_WNVWT_12h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 12 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_WNVWT_12h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 12 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_WNVWT_12h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 12 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_mock_24h_3_mRNA

source_name: Primary cortical neurons, mock-inoculated, 24 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_WNVWT_8h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 8 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_WNVWT_1h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 1 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_WNVWT_8h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 8 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_WNVWT_1h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 1 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_WNVWT_8h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 8 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_WNVWT_1h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 1 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_mock_12h_1_mRNA

source_name: Primary cortical neurons, mock-inoculated, 12 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_mock_12h_2_mRNA

source_name: Primary cortical neurons, mock-inoculated, 12 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_mock_24h_2_mRNA

source_name: Primary cortical neurons, mock-inoculated, 24 hour(s), bioreplicate 2, technical replicate 2


title: WCN003_mock_24h_1_mRNA

source_name: Primary cortical neurons, mock-inoculated, 24 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_mock_12h_3_mRNA

source_name: Primary cortical neurons, mock-inoculated, 12 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_mock_8h_2_mRNA

source_name: Primary cortical neurons, mock-inoculated, 8 hour(s), bioreplicate 2, technical replicate 2


title: WCN002_WNVE218A_24h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 24 hour(s), bioreplicate 1, technical replicate 1


title: WCN002_WNVE218A_24h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 24 hour(s), bioreplicate 1, technical replicate 2


title: WCN003_mock_1h_2_mRNA

source_name: Primary cortical neurons, mock-inoculated, 1 hour(s), bioreplicate 2, technical replicate 2


title: WCN002_WNVE218A_24h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 24 hour(s), bioreplicate 1, technical replicate 3


title: WCN002_WNVE218A_1h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 1 hour(s), bioreplicate 1, technical replicate 2


title: WCN002_WNVE218A_12h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 12 hour(s), bioreplicate 1, technical replicate 2


title: WCN002_WNVE218A_12h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 12 hour(s), bioreplicate 1, technical replicate 3


title: WCN003_mock_8h_1_mRNA

source_name: Primary cortical neurons, mock-inoculated, 8 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_mock_1h_1_mRNA

source_name: Primary cortical neurons, mock-inoculated, 1 hour(s), bioreplicate 2, technical replicate 1


title: WCN003_WNVE218A_12h_1_microRNA

source_name: Primary cortical neurons, WNVE-inoculated, 12 hour(s), bioreplicate 2, technical replicate 1


title: WCN002_WNVWT_12h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 12 hour(s), bioreplicate 1, technical replicate 1


title: WCN002_WNVWT_8h_2_mRNA

source_name: Primary cortical neurons, inoculated with WNVWT, 8 hour(s), bioreplicate 1, technical replicate 2


title: WCN002_WNVE218A_8h_3_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 8 hour(s), bioreplicate 1, technical replicate 3


title: WCN003_WNVWT_12h_3_microRNA

source_name: Primary cortical neurons, WNVW-inoculated, 12 hour(s), bioreplicate 2, technical replicate 3


title: WCN003_mock_8h_3_mRNA

source_name: Primary cortical neurons, mock-inoculated, 8 hour(s), bioreplicate 2, technical replicate 3


title: WCN002_WNVE218A_12h_1_mRNA

source_name: Primary cortical neurons, inoculated with WNVE218A, 12 hour(s), bioreplicate 1, technical replicate 1