title: CCR7+CD45RA+ CD8 T cells, Healthy donor 4

description:
Expression data from naïve (CCR7+CD45RA+) CD8 T cells of healty donor from Thailand
Naïve-4

source_name: Naïve CD8 T cells (CCR7+CD45RA+) from healthy donor

value: control

value: Adult


title: MEC-L2-4

status: Public on Oct 05 2016

type: RNA

city: Silverthorne

first: Margaret

middle: C

last: Neville

state: CO

address: 712 Eveningstar Rd

department: OB/GYN

country: USA

institute: UC Denver

description: microRNA expression of MECs isolated from Lactation day 2 mice

hyb_protocol: Hybridization was performed as per manufacturer's instructions by UC Denver Microarray core facility

scan_protocol: Scanning was performed as per manufacturer's instructions by UC Denver Microarray core facility

data_processing: All cel files were analyzed in miRNA Affy QC tool (version 1.0.33.0) and RMA normalized signal intensities were exported as text file for further analysis of mouse specific miRNA probesets (609) in GeneSpring.

label: biotin

molecule: total RNA

organism: Mus musculus

source_name: Mammary epithelial cells

label_protocol: Labelling was performed as per manufacturer's instructions by UC Denver Microarray core facility

growth_protocol: Eight CD1 mice were bred and day of observation of a vaginal plug was recorded as Day 0 of pregnancy

extract_protocol: Adipose depleted mammary epithelial cells were isolated from mammary gland tissue as described in PMID: 19953310 and RNA was isolated using TRIZOL and subsequently purified with Qiagen RNAeasy columns.

treatment_protocol: 4 mice were euthanized on day 14 of pregnancy and remaining 4 mice were euthanized on Lactation day 2

tag: subject

value: Female CD1 mice

tag: age


title: HLA-DR+CD38+ CD8 T cells, Dengue patient 3

city: Atlanta

first: Jaturong

last: Sewatanon

state: GA

address: 1462 Clifton Rd. NE, Room 412

department: Microbiology and Immunology

institute: Emory University School of Medicine

description:
Expression data from activated (HLA-DR+CD38+) CD8 T cells of dengue patient from Thailand
Dengue-3

hyb_protocol: Standard Affymetrix protocol

scan_protocol: Chips were scanned on a seventh−generation GeneChip scanner 3000 (Affymetrix)

data_processing: Affymetrix GCOS software was used to generate the raw intensity data file.

organism: Homo sapiens

source_name: Activated CD8 T cells (HLA-DR+CD38+) from dengue patient

label_protocol: Standard Affymetrix protocol

growth_protocol: PBMCs isolated from peripheral whole blood of dengue patients and healthy controls were stained with relevant antibodies at 4oC for 30 mins, washed thoroughly and suspended in PBS containg 2% FCS and immediately sorted on a BD FACS Aria III (Becton and Dickenson) with high forward scatter gates to account for the larger blasting effector lymphocytes. CD3+CD8+CD45RA+CCR7+ naïve CD8 T cells and CD3+CD8+HLA-DR+CD38+ activated CD8 T cells were isolated up to a purity of 99%.

extract_protocol: All samples were processed simultaneously for RNA isolation using glycogen as carrier by standard Trizol RNA isolation procedures. Total RNA was evaluated by spectrophotometry to determine quantity, protein concentration and organic solvent contamination and Agilent 2100 bio analyzer was used to determine RNA degradation. Two-rounds of in-vitro transcription were performed to amplify RNA.

treatment_protocol: FACS sorted cells were washed thoroughly and the cell pellet was immediately suspended in Trizol (Invitrogen) and stored at -80oC until RNA extraction.

tag: cell type

value: CD8 T cells from PBMCs

tag: disease state

value: Dengue fever (DF)

value: 29 years old


title: MEC-P14-4

description: microRNA expression of MECs isolated from Pregnancy day 14 mice


title: MEC-P14-3


title: HLA-DR+CD38+ CD8 T cells, Dengue patient 2

description:
Expression data from activated (HLA-DR+CD38+) CD8 T cells of dengue patient from Thailand
Dengue-2

value: 36 years old


title: AB20_Day 14_SEM-F_CD71+, CD235a+

city: Oxford

first: Alison

middle: T

last: Merryweather-Clarke

address: John Radcliffe Hospital, Headley Way, Headington

country: United Kingdom

institute: NHSBT Oxford

hyb_protocol: HTA2 arrays were hybridized with 5 μg of labelled DNA according to manufacturer's instructions.

scan_protocol: The Affymetrix GeneChip Fluidics Station 450 was used to wash and stain the arrays with streptavidin–phycoerythrin, according to the standard protocol for eukaryotic targets (IHC kit, Affymetrix). Arrays were scanned with an Affymetrix GeneChip scanner 3000 at 570nm.

data_processing: Intensity values were determined using GeneChip Operating Software (Affymetrix)and normalized by the Robust Multiarray Average algorithm using Affymetrix Expression Console software. Statistical analysis of differential expression was conducted using the Linear Models for Microarray Data package from the Bioconductor suite in R (www.bioconductor.org). The B values, p-values, and fold changes were used to select differentially expressed (DE) genes reaching a minimum linear expression value of 100 in all replicates of at least one sample group (p ≤ 0.01, fold change (FC) ≥ 2, B > 2.945). Principal component analysis (PCA) was conducted and displayed using Python packages. Hierarchical clustering (HC) analysis was performed using Python SciPy. Heat maps were generated using Python matplotlib. More advanced consensus clustering was conducted using SMART and Bi-CoPaM algorithms in MATLAB, using Biclustering from the biclust package in R. Biopython to fetch 1kb of genomic DNA sequence upstream of the transcriptional start sites (TSS) of each gene in the cluster. MEME suite was used for transcription factor binding site (TFBS) analysis, seeking homology with motifs in the Jolma database. Differentially-expressed genes were examined for enriched functional ontologies using GeneCoDis.

label: Biotin

source_name: AB_Day 14_SEM-F_CD71+,CD235a+

label_protocol: The target was prepared from 100ng DNAsed total RNA for hybridization to Affymetrix GeneChip Human Transcriptome 2.0 ST microarrays (HTA2) using the Ambion WT protocol (Life Technologies) and Affymetrix labelling and hybridization kits (Affymetrix). Labelled DNA mean yield was 13.5 μg (minimum: 8.5 μg; maximum: 20.5 μg).

growth_protocol: Human primary differentiating EBs derived from adult peripheral blood lymphocyte cones (AB) (NHS Blood and Transplant) or cord blood (CB) were obtained with informed consent in accordance with the Declaration of Helsinki. EBs were cultured using a three-phase liquid culture system {Griffiths, 2012 #516} with modifications. HiPSCs were established from fibroblasts or hematopoietic cells transduced with OCT4, SOX2 and KLF4 {Yang, 2014 #522} and EBs were generated by modifying a published protocol {Dias, 2011} in medium optimized for hiPSC-derived EB culture (SEM-i).

extract_protocol: Total RNA including miRNA was extracted using mirVana (Life Technologies) according to the manufacturer’s instructions. RNA quality and quantity was assessed using a Qubit fluorimeter (Life Technologies), a NanoDrop spectrophotometer (Thermo) and an Agilent Bioanalyzer 2100 (Agilent Technologies). RNA integrity numbers were in the range 8.7-10. Before target preparation for hybridization to Affymetrix Human Transcriptome 2.0 (HTA2.0) arrays (Affymetrix), RNA was treated with Turbo DNA-Free DNAse (Life Technologies).

treatment_protocol: AB- and CB-derived EBs were stained and sorted on a MoFlo II (Beckman Coulter) using anti–CD36-PE (BD Biosciences; for EBs cultured for between four and seven days), anti–CD71-FITC (Dako), anti–CD235a-APC (BD Biosciences; for EBs cultured between four and 12 days), and anti–CD235a-RPE (Dako; for EBs cultured for 14 days). At day 0, AB-, CB- and hiPSC-derived HSPCs were isolated using CD34-beads (Miltenyi). HiPSC-derived hematopoietic progenitors were also isolated using CD31 beads at day 0  to incorporate all possible sources of erythroid progenitors. As insufficient cell numbers were obtained for FACS sorting of EBs derived from hiPSCs, CD71 and CD235a-specific magnetic beads were used to isolate hiPSC-EB populations at days 7 and 14 respectively. AB-EBs were isolated using these beads for direct comparison with hiPSC-derived EBs. Maturation of EBs was monitored by staining cytospin preparations from 5x104 cells with Wright-Giemsa and assessed using light microscopy. To visualise hemoglobin expression, cytospins were stained with 1% O-dianisidine in methanol and counterstained with 10% Giemsa (BDH).

tag: days cultured

tag: source

value: Adult PBMCs

tag: population

tag: media

value: SEM-F

tag: enrichment method

value: Flow Cytometry

value: AB-EB


title: AB19_Day 14_SEM-F_CD71+, CD235a+


title: AB32_Day 14_SEM-F_CD235a+

source_name: AB_Day 14_SEM-F_CD235a+

value: Magnetic Beads


title: HLA-DR+CD38+ CD8 T cells, Dengue patient 7

description:
Expression data from activated (HLA-DR+CD38+) CD8 T cells of dengue patient from Thailand
Dengue-7

value: Dengue hemorrhagic fever (DHF)

value: 9 years old


title: AB43_Day 14_SEM-F_CD235a+


title: MEC-P14-2


title: CCR7+CD45RA+ CD8 T cells, Healthy donor 5

description:
Expression data from naïve (CCR7+CD45RA+) CD8 T cells of healty donor from Thailand
Naïve-5


title: AB32_Day 14_SEM-i_CD235a+

source_name: AB_Day 14_SEM-i_CD235a+

value: SEM-i


title: AB15_Day 14_SEM-F_CD71+, CD235a+


title: MEC-P14-1


title: AB33_Day 14_SEM-F_CD235a+


title: AB20_Day 14_SEM-B_CD71+, CD235a+

source_name: AB_Day 14_SEM-B_CD71+,CD235a+

value: SEM-B


title: AB33_Day 14_SEM-i_CD235a+


title: AB51_Day 10_SEM-F_CD71+, CD235a+

source_name: AB_Day 10_SEM-F_CD71+,CD235a+


title: AB49_Day 10_SEM-F_CD71+, CD235a+


title: CDT+DHT treated rep2

city: Philadelphia

first: Christopher

last: McNair

state: PA

address: 833 Chestnut Street Ste 1140

department: Medical Oncology

institute: Thomas Jefferson University

description: 72 hours in CDT + 3 hour DHT

hyb_protocol: 5ug cDNA in 220ul hybridization cocktail was hybridized on the Affymetrix Human Gene 1.0 ST Array in a GeneChip Hybridization Oven 645. Target denaturation was performed at 99C for 2 minutes, 45C for 5min, followed by hybridization for 18h.

scan_protocol: Affymetrix Gene ChIP Scanner 3000 7G

data_processing: iterPLIER summarization using PM-GCBG background correction and quantile normalization was performed in Affymetrix Expression Console 1.1

source_name: LNCaP CDT+DHT 2

label_protocol: 5ug cDNA was fragmented and chemically labeled with biotin using the FL-Ovation cDNA biotin module (NuGen Technologies, Inc)

growth_protocol: LNCaP cells were cultured in hormone proficient media

extract_protocol: Trizol RNA extraction, followed by cDNA amplification with the Ovation Pico WTA-system V2 RNA amplification system (NuGen Technologies, Inc)

treatment_protocol: Cells were treated with indicated drug 24 hours prior to harvest, and 10nM DHT 3 hours prior to harvest, with the exception of CDT control which treated with CDT for 72 hours and EtOH 3 hours prior to harvest

tag: cell line

value: LNCaP


title: CCR7+CD45RA+ CD8 T cells, Healthy donor 1

description:
Expression data from naïve (CCR7+CD45RA+) CD8 T cells of healty donor from Thailand
Naïve-1

value: control


title: AB19_Day 14_SEM-B_CD71+, CD235a+


title: AB50_Day 10_SEM-F_CD71+, CD235a+


title: late G1 arrested rep3

description: treated for 24 hours with 5μg/mL roscovitine + 3 hour DHT

source_name: LNCaP ROS 3


title: early G1 arrested rep3

description: treated for 24 hours with 0.5μM PD-0332991 +3 hour 10nm DHT

source_name: LNCaP PD treated 3


title: BJ_Ctr_3

city: Ribeirao Preto

first: Rodrigo

middle: Alexandre

last: Panepucci

state: São Paulo

address: R. Tenente Catao Roxo, 2501

country: Brazil

institute: Regional Blood Center of Ribeirâo Preto (FUNDHERP, HC-FMRP-USP)

description: Human BJ1 fibroblasts were transfected with 50 nM of synthetic control miR-Ctr and total RNA was extracted 72 hours post-transfection for analisis.

hyb_protocol: The cRNA was purified on an RNeasy column and 10µg were fragmented and hybridized to microarrays overnight (17h at 65oC and 4 RPM) in SureHyb chambers placed in a rotator oven incubator (Agilent, G2534A, G2530-60029 and G2545A), using the “Gene Expression Hybridization Kit” (Agilent, 5188-5242). After posthybridization washes (“Wash Buffers 1 and 2 Kit”, Agilent, 5188-5327), arrays were dried and analyzed.

scan_protocol: Microarray slides were scanned at 535 nm with 5 μm/pixel resolution using a DNA Microarray Scanner with SureScan High-Resolution Technology (Agilent Technologies) and the fluorescent intensities were determined by the Feature Extraction Software Version 11.5 (Agilent Technologies), to obtain Processed Signals (resulting from all intra-array pre-processing, including background corrections)  corresponding to the transcript levels.

data_processing: Inter-array quantile normalization was carried, forcing the entire empirical distribution of each array to be identical. Differentially expressed transcripts were computed by fitting the normalized intensities in a linear model and computing moderated t-test by empirical Bayes moderation of the standard errors towards a common value, as described in the the R/Bioconductor Limma Package. Adjusted P values were calculated using the False Discovery Rate multiple testing correction, and a cutoff of 0.05 was used.

source_name: miR-Ctr transfected BJ human fibroblasts

label_protocol: Cy3-labelled cRNA was generated using the “Quick Amp Labeling Kit, one-color” (Agilent, 5190-0442), following the manufacturer’s protocol. Briefly, 1µg total RNA from each studied sample was spiked with a control RNA (“One Color RNA Spike-In Kit”, Agilent, 5188-5282) and reverse transcribed using T7 oligo(dT) primers, followed by synthesis of the second complementary DNA (cDNA) strand and purification of double-strand cDNA with QIAquick columns (Qiagen). Cy3-labelled cRNA was then generated by an in vitro transcription reaction using T7 RNA polymerase and Cyanine 3-CTP and labeling efficiency was measured using a NanoDrop 1000 spectrophotometer.

growth_protocol: Human Human BJ1 fibroblasts were cultured in low glucose DMEM (Sigma Aldrich), 10% heat-inactivated FBS (Fetal Bovine Serum, from Hyclone), 1mM L-glutamine, 100U/ml penicillin/streptomycin (Invitrogen).

extract_protocol: Total RNA was extracted using TRIzol (Life Technologies) following the manufacturer's instructions. RNA was further cleaned up using was cleaned up using the RNeasy mini kit (QIAGEN)  prior to Cy3 labelling.

treatment_protocol: Human BJ1 fibroblasts were transfected with 50 nM of synthetic miR-29a mimics (n=3) or control miR-Ctr molecules (n=3) in 12-well plates, using Lipofectamine RNAiMax (Invitrogen), according to the manufacturer's instructions. Total RNA was extracted 72 hours post-transfection and analyzed.

tag: tissue

value: foreskin

tag: rna id


title: CDT+DHT treated rep1

description: 72 hours in CDT + 3 hour DHT

source_name: LNCaP CDT+DHT 1


title: AB50_Day 12_SEM-F_CD71+, CD235a+

source_name: AB_Day 12_SEM-F_CD71+,CD235a+


title: AB48_Day 7_SEM-i_CD71+

source_name: AB_Day 7_SEM-i_CD71+


title: CDT treated rep1

description: 72 hours in CDT + 3 hour EtOH

source_name: LNCaP CDT 1


title: AB51_Day 12_SEM-F_CD71+, CD235a+


title: CDT treated rep2

description: 72 hours in CDT + 3 hour EtOH

source_name: LNCaP CDT 2


title: BJ_PM29a_1

description: Human BJ1 fibroblasts were transfected with 50 nM of synthetic miR-29a mimics and total RNA was extracted 72 hours post-transfection for analisis.

source_name: miR-29a transfected BJ human fibroblasts


title: late G1 arrested rep1

source_name: LNCaP ROS 1


title: CDT treated rep3

description: 72 hours in CDT + 3 hour EtOH

source_name: LNCaP CDT3


title: BJ_Ctr_2


title: late G1 arrested rep2

source_name: LNCaP ROS 2


title: early G1 arrested rep2

source_name: LNCaP PD treated 2


title: BJ_PM29a_2


title: CCR7+CD45RA+ CD8 T cells, Healthy donor 2

description:
Expression data from naïve (CCR7+CD45RA+) CD8 T cells of healty donor from Thailand
Naïve-2

source_name: Naïve CD8 T cells (CCR7+CD45RA+) from healthy donor

value: Adult


title: AB15_Day 14_SEM-B_CD71+, CD235a+

source_name: AB_Day 14_SEM-B_CD71+,CD235a+


title: AB49_Day 12_SEM-F_CD71+, CD235a+


title: CDT+DHT treated rep3

description: 72 hours in CDT + 3 hour DHT

source_name: LNCaP CDT+DHT 3


title: BJ_PM29a_3


title: CCR7+CD45RA+ CD8 T cells, Healthy donor 3

description:
Expression data from naïve (CCR7+CD45RA+) CD8 T cells of healty donor from Thailand
Naïve-3

value: CD8 T cells from PBMCs


title: BJ_Ctr_1


title: late s arrested rep3

description: treated for 24 hours with 1mM hydroxyurea +3 hour 10nm DHT

source_name: LNCaP HU treated 3


title: AB35_Day 14_SEM-i_CD235a+

source_name: AB_Day 14_SEM-i_CD235a+


title: AB47_Day 7_SEM-i_CD71+


title: G2/M arrested rep3

description: 2μg/mL aphidicolin for 15 hours, followed by washout and treatment with 50ng/mL nocodozole for 9 hours+3 hour 10nm DHT

source_name: LNCaP APH/NOC treated 3


title: early G1 arrested rep1

source_name: LNCaP PD treated 1


title: AB46_Day 7_SEM-i_CD71+


title: late s arrested rep2

source_name: LNCaP HU treated 2


title: AB35_Day 7_SEM-i_CD71+


title: G2/M arrested rep2

description: 2μg/mL aphidicolin for 15 hours, followed by washout and treatment with 50ng/mL nocodozole for 9 hours +3 hour 10nm DHT

source_name: LNCaP APH/NOC treated 2


title: late s arrested rep1

source_name: LNCaP HU treated 1


title: early s arrested rep1

description: treated for 24 hours with 2μg/mL aphidicolin +3 hour 10nm DHT

source_name: LNCaP APH treated 1


title: AB32_Day 7_SEM-i_CD71+

source_name: AB_Day 7_SEM-i_CD71+


title: early s arrested rep2

source_name: LNCaP APH treated 2


title: MEC-L2-3

description: Gene expression of MECs isolated from Lactation day 2 mice

data_processing: All cell files were analyzed in Affymetrix GenChip Operating Software (GCOS) and Robust Multi-chip Array (RMA) normalized signal intensities were exported as text file for further analysis in GeneSpring.

source_name: Mammary epithelial cells

treatment_protocol: 4 mice wre euthanized on day 14 of pregnancy and remaining 4 mice were euthanized on Lactation day 2

value: Adipose depleted mammary epithelial cells

tag: strain

tag: Sex

value: female

tag: Stage

value: Lactation day 2 mice


title: AB45_Day 7_SEM-F_CD71+

source_name: AB_Day 7_SEM-F_CD71+

value: Adult PBMCs


title: Diagnostic_DLBCL_sample_H451 [re-analysis]

city: Aalborg

first: Julie

middle: Støve

last: Bødker

address: Sdr. Skovvej 15

department: Department of Heamatology

country: Denmark

institute: Aalborg University Hospital

hyb_protocol: Included in the label protocol.

scan_protocol: Gene Chips were scanned using the Affymetrix GeneChip scanner 3000 7G

data_processing:
Data were analyzed using R version 3.0.2 and several R and Bioconductor packages and Partek Genomics Suite version 6.6. The .CEL files were pre-processed in Partek using the Robust Multichip Average procedure (RMA) and scan date and labelling kit were set as random effects.
The .CEL files were pre-processed in Partek Genomics Suite version 6.6. RMA normalization was used and scan date and labelling kit were set as random effects.

source_name: diagnostic diffuse large B-cell lymphoma sample

label_protocol: Biotinylated cRNA were prepared using the GeneChip 3' IVT Express Kit (#P/N901229, Affymetrix) from 100 ng total RNA using manual P/N702646 Rev.4.

extract_protocol: Total RNA was purified from frozen diagnostic DLBCLs by homogenizing the sample in Trizol and incubating for 5 minutes at RT. 200µl chloroform was added and incubated 2 minutes at RT, the mixture was centrifuged at 12,000 g for 10 minutes at 4°C. The aqueous phase was transferred to a new tube and 100 % ethanol added in 1.25X the volume. Mix well and transfer to mirVANA columns (#1561, Ambion) and follow the manufacturer’s instruction from this point.

treatment_protocol: Diagnostic samples of diffuse large B-cell lymphoma (DLBCL)

value: diagnostic diffuse large B-cell lymphoma (DLBCL)

tag: abc/gcb class

value: ABC

tag: bags class

value: Plasmablast

tag: the regs probability of resistance towards doxorubicin (h)

tag: ipi status

tag: treatment

value: radiotherapy


title: MEC-P14-3

description: Gene expression of MECs isolated from Pregnancy day 14 mice

tag: cell type

value: Pregnancy day 14 mice


title: AB43_Day 7_SEM-F_CD71+

tag: days cultured

value: SEM-F

value: Magnetic Beads

value: AB-EB


title: MEC-P14-2


title: MEC-L2-2


title: AB33_Day 7_SEM-F_CD71+

tag: source


title: MEC-L2-4


title: AB35_Day 7_SEM-F_CD71+

tag: population


title: AB32_Day 7_SEM-F_CD71+

tag: media


title: G2/M arrested rep1

source_name: LNCaP APH/NOC treated 1

value: LNCaP


title: Primary hepatocytes, HO1 ko/HO2 kd, biological rep 1

city: Berlin

first: Karsten

last: Jürchott

address: Luisenstraße

department: Rahel Hirsch Center

country: Germany

institute: BIH at Charité

description:
HO1koHO2kd-1
Gene expression data, HO1-/-, HO2 knock-down (siRNA).

hyb_protocol: The biotinylated DNA was added to a hybridization cocktail for hybridization to the Human/Mouse/Rat Gene 1.0ST Array, also containing 50pM control oligonucleotide B2, eukaryotic hybridization controls (bioB, bioC, bioD, 1,5, 5; 25 pM respectively), accordingly to the manufacturer's protocol (Hybridization Wash and Stain Kit, Affymetrix). The hybridization in the Affymetrix hybridization oven 640 at 45°C and 60 rpm for 16hrs, the staining and washing, processed in the Fluidics Station 450 were carried out as recommended by Affymetrix (Affymetrix Inc., Santa Clara, CA, USA).

scan_protocol: The scanning on the GeneChip Scanner 3000 G7 system was carried out as recommended by Affymetrix (Affymetrix Inc., Santa Clara, CA, USA).

data_processing: Raw data were preprocessed and RMA normalized using the affy package from Bioconductor (R 2.15.0) with the default settings.

source_name: livers of male HO1-/- mice, HO2 knock-down

label_protocol: For the first cycle cDNA synthesis 300ng of total RNA was used. During the following in vitro transcription reaction cRNA was obtained and used as starting material for the second cycle cDNA synthesis. The second cycle random-primed single strand DNA synthesis resulted in a product containing incorporated deoxyuridine at predefined ratios relative to thymidine (Ambion® WT Expression Kit (Ambion, Austin, Texas, USA)). Subsequently, 5.5 μg of this generated single-strand DNA was fragmented with a combination of uracil DNA glucosylase (UDG) and apurinic/apyrimidinic endonuclease 1 (APE1) and then labeled using the WT terminal labeling kit (Affymetrix Inc., Santa Clara, CA, USA).

growth_protocol: Isolation of hepatocytes was performed essentially as previously described (Wilson et al. 2010). In brief, livers of anesthetized male HO1+/+ or HO1-/- (BALB/c background) mice were perfused with digestion buffer containing 5000 U collagenase (Worthington Biochemical Corp). After filtration and separation by using a Percoll gradient (Biochrome), cells were seeded in gelatine (0.2 % in PBS) in Dulbecco's Modified Eagle's Medium (DMEM) containing 10% FBS (Invitrogen) and 1% penicillin/streptomycin (GIBCO).

extract_protocol: Total RNA was prepared with the PureLink® RNA Mini Kit (LifeTechnologies™) including an additional DNase treatment step (PureLink® DNase (LifeTechnologies™). RNA integrity was checked by analyzing on the 2100 Bioanalyzer (Agilent Technologies, PA, USA).

treatment_protocol: After attachment to the cell culture plate, hepatocytes were transduced with lentivirus producing shRNA against Ho-2 mRNA (pLKO.1-TRCN0000076357, Thermo Fischer) or non-silencing control pLKO.1 vector containing scrambled shRNA (Plasmid 1864, Adgene) plus 8 ng/mL protamine sulfate. After 24 h, medium was exchanged to puromycin-containing (10 mg/mL) medium for selection. After 3 days, cells were synchronized with 1 µM dexamethasone for 30 min and harvested 28 h later.

tag: strain/background

value: BALB/c

tag: genotype/variation

tag: shRNA

tag: gender

value: male

value: primary hepatocytes


title: Primary hepatocytes, HO1 ko/HO2 kd, biological rep 2

description:
HO1koHO2kd-2
Gene expression data, HO1-/-, HO2 knock-down (siRNA).


title: Primary hepatocytes, HO1 ko, biological rep 1

description:
HO1ko-1
Gene expression data, HO1-/-.

source_name: livers of male HO1-/- mice

value: scrambled


title: Primary hepatocytes, control, biological rep 2

description:
Con-2
Gene expression data, control.

source_name: livers of male HO1+/+ mice


title: Primary hepatocytes, HO2 kd, biological rep 1

description:
HO2kd-1
Gene expression data, HO2 knock-down (siRNA).

source_name: livers of male HO1+/+ mice, HO2 knock-down


title: AB18_Day 7_SEM-F_CD36+, CD71+, CD235a+

tag: enrichment method

value: Flow Cytometry


title: AB20_Day 7_SEM-F_CD36+, CD71+, CD235a+


title: MEC-L2-1

value: Adipose depleted mammary epithelial cells

tag: strain

tag: Sex

value: female


title: Diagnostic_DLBCL_sample_H441 [re-analysis]

tag: tissue

tag: abc/gcb class

value: Centrocyte

value: radiotherapy and surgery


title: MEC-P14-4

tag: Stage


title: Primary hepatocytes, HO2 kd, biological rep 2

description:
HO2-kd-2
Gene expression data, HO2 knock-down (siRNA).


title: MEC-P14-1


title: Primary hepatocytes, control, biological rep 1

description:
Con-1
Gene expression data, control.


title: Primary hepatocytes, HO1 ko, biological rep 2

description:
HO1ko-2
Gene expression data, HO1-/-.


title: AB7_Day 7_SEM-F_CD36+, CD71+, CD235a+

value: Adult PBMCs


title: PatKO_3

city: London

first: Reiner

last: Schulz

address: 8th floor Guy's Tower

department: Medical & Molecular Genetics

institute: King's College London

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing:
Raw signals and detection p-values were exported for regular and control probes from GenomeStudio. Data were imported into R using the Bioconductor beadarray package. Data were background-corrected, quantile-normalised and log2-transformed using the limma implementation of the neqc method (Shi et al. Nucl Acids Res 2010).
Raw signals and detection p-values of non-control and control probes, and processed signals for non-control probes.

source_name: Ddc+/- mouse 3

label_protocol: Microarray libraries were generated using the Illumina TotalPrep RNA amplification kit (Ambion) as per the manufacturer's instructions.

extract_protocol: RNA was extracted using the Qiagen RNeasy kit according to manufacturers' instructions.

treatment_protocol: Heart samples were dissected from E15.5 embryos and snap frozen in liquid nitrogen.

tag: genotype

value: PatKO

tag: replicate


title: KO_1

source_name: Ddc-/- mouse 1

value: KO


title: AB19_Day 7_SEM-F_CD36+, CD71+, CD235a-

tag: cell type


title: AB18_Day 7_SEM-F_CD36+, CD71+, CD235a-

tag: days cultured


title: PatKO_2

source_name: Ddc+/- mouse 2


title: PatKO_4

source_name: Ddc+/- mouse 4


title: MatKO_3

source_name: Ddc-/+ mouse 3

value: MatKO


title: AB19_Day 7_SEM-B_CD36+, CD71+, CD235a+

tag: source

value: SEM-B


title: MatKO_4

source_name: Ddc-/+ mouse 4


title: PatKO_1

source_name: Ddc+/- mouse 1


title: AB20_Day 7_SEM-B_CD36+, CD71+, CD235a+

tag: population


title: MatKO_2

source_name: Ddc-/+ mouse 2


title: AB7_Day 7_SEM-F_CD36+, CD71+, CD235a-

tag: media

value: SEM-F


title: MatKO_1

source_name: Ddc-/+ mouse 1


title: aft2 under 2 h iron starvation, replicate 2

city: Jena

first: Sascha

last: Brunke

address: Beutenbergstr. 11a

department: MPM

institute: Hans-Knöll-Institut

hyb_protocol: Samples were hybridized using the Gene Expression Hybridization Kit (Agilent) according to manufacturer's instructions.

scan_protocol: Scanned with a GenePix 4200AL (GenePix Pro 6.1, Auto PMT wavelengths 635/594, pixel size 5 µm)

data_processing: Agilent Feature Extraction Software was used for background subtraction and LOWESS normalization.

organism: Nakaseomyces glabratus

source_name: Yeasts in SD medium, iron-free

label_protocol: 1 µg high-quality RNA was used to generate cRNA fluorescently labeled with Cy5 CTP (GE Healthcare) using the One-Color Quick Amp labeling kit (Agilent).

growth_protocol: Strains were cultured overnight in SD, harvested by centrifugation and washed four times in iron-free water. Cells were adjusted to 1×10E7 cells/ml in iron-free SD (pH 5.8) supplemented with 5 µM FeCl3 and pre-grown for 4 h at 37°C and 180 rpm.

extract_protocol: RNA was isolated with the RNAeasy Mini Kit (Qiagen) and quality was verified using the Agilent 2100 Bioanalyzer Nanochip system.

treatment_protocol: For the time series, cultures were harvested by centrifugation and washed four times with iron-free SD, then incubated in iron-free SD.

tag: time

value: 2 h

source_name: Yeast in YPD, log phase (common reference)

value: 4 h


title: aft2 under 4 h iron starvation, replicate 2


title: WT_3

source_name: wildtype mouse 3

value: WT


title: sef1 under 4 h iron starvation, replicate 2


title: aft2 under 0 h iron starvation, replicate 3

value: 0 h


title: ftr1 under 0 h iron starvation, replicate 3


title: ftr1 under 4 h iron starvation, replicate 2


title: AB18_Day 7_SEM-B_CD36+, CD71+, CD235a+

value: AB-EB


title: AB20_Day 7_SEM-B_CD36+, CD71+, CD235a-


title: WT_1

source_name: wildtype mouse 1


title: Wild type under 4 h iron starvation, replicate 2


title: sef1 under 0 h iron starvation, replicate 3


title: Wild type under 0 h iron starvation, replicate 3


title: sef1 under 2 h iron starvation, replicate 3


title: WT_2

source_name: wildtype mouse 2


title: AB18_Day 7_SEM-B_CD36+, CD71+, CD235a-


title: AB22_Day 4_SEM-i_CD36+, CD71+, CD235a-

value: SEM-i


title: AB19_Day 7_SEM-B_CD36+, CD71+, CD235a-

value: Flow Cytometry


title: aft2 under 1 h iron starvation, replicate 3

value: 1 h


title: aft2 under 2 h iron starvation, replicate 3


title: ftr1 under 2 h iron starvation, replicate 3


title: sef1 under 1 h iron starvation, replicate 3


title: ftr1 under 1 h iron starvation, replicate 3


title: Wild type under 2 h iron starvation, replicate 3


title: Wild type under 1 h iron starvation, replicate 3


title: AB28_Day 4_SEM-i_CD36+, CD71+, CD235a-


title: sef1 under 0 h iron starvation, replicate 1


title: AB8_Day 4_SEM-F_CD36+, CD71+, CD235a-


title: AB9_Day 4_SEM-F_CD36+, CD71+, CD235a-


title: AB17_Day 4_SEM-B_CD36+, CD71+, CD235a-


title: AB21_Day 4_SEM-i_CD36+, CD71+, CD235a-


title: AB11_Day 4_SEM-F_CD36+, CD71+, CD235a-


title: sef1 under 4 h iron starvation, replicate 3


title: AB16_Day 4_SEM-B_CD36+, CD71+, CD235a-

source_name: AB_Day 4_SEM-B


title: AB42_Day 0_CD34+

source_name: AB_Day 0_CD34+

value: Magnetic Beads


title: ftr1 under 0.5 h iron starvation, replicate 1


title: ftr1 under 0 h iron starvation, replicate 1


title: Wild type under 4 h iron starvation, replicate 3


title: sef1 under 1 h iron starvation, replicate 1


title: Wild type under 0 h iron starvation, replicate 1


title: aft2 under 1 h iron starvation, replicate 1


title: aft2 under 4 h iron starvation, replicate 1


title: aft2 under 0 h iron starvation, replicate 1


title: aft2 under 4 h iron starvation, replicate 3


title: sef1 under 4 h iron starvation, replicate 1


title: aft2 under 2 h iron starvation, replicate 1


title: sef1 under 2 h iron starvation, replicate 1


title: AB23_Day 0_CD34+


title: ftr1 under 4 h iron starvation, replicate 1


title: Wild type under 1 h iron starvation, replicate 1


title: ftr1 under 2 h iron starvation, replicate 1


title: ftr1 under 4 h iron starvation, replicate 3


title: AB24_Day 0_CD34+


title: sef1 under 0.5 h iron starvation, replicate 1


title: ftr1 under 2 h iron starvation, replicate 2


title: Wild type under 4 h iron starvation, replicate 1


title: Wild type under 2 h iron starvation, replicate 1


title: sef1 under 2 h iron starvation, replicate 2


title: sef1 under 1 h iron starvation, replicate 2


title: Wild type under 0 h iron starvation, replicate 2


title: aft2 under 1 h iron starvation, replicate 2


title: ftr1 under 1 h iron starvation, replicate 1


title: Wild type under 0.5 h iron starvation, replicate 1


title: aft2 under 0.5 h iron starvation, replicate 1


title: sef1 under 0.5 h iron starvation, replicate 2


title: Wild type under 1 h iron starvation, replicate 2


title: Wild type under 2 h iron starvation, replicate 2


title: NSC_rep2

city: Seoul

first: Hyun Woo

last: Choi

country: South Korea

institute: Konkuk University

hyb_protocol: 750 ng of labeled cRNA samples were hybridized to each Mouse Ref-8 expression v.2 bead array for 16-18 h at 58°C, according to the manufacturer's instructions (Illumina, Inc., San Diego, USA). Detection of array signal was carried out using Amersham fluorolink streptavidin-Cy3 (GE Healthcare Bio-Sciences, Little Chalfont, UK) following the bead array manual.

scan_protocol: Arrays were scanned with an Illumina bead array Reader confocal scanner according to the manufacturer's instructions.

data_processing: Raw data were extracted using the software provided by the manufacturer (Illumina GenomeStudio v2011.1 (Gene Expression Module v1.9.0)). Array probe signal value was transformed by logarithm and normalized by quantile method. The comparative analysis between test group and control group was carried out using fold-change and LPE (Local Pooled Error) test. False discovery rate (FDR) was controlled by adjusting p value using Benjamini-Hochberg algorithm.

source_name: 13.5 dpc, Brain-derived

label_protocol: Total RNA was amplified and purified using the Ambion Illumina RNA amplification kit (Ambion, Austin, USA) to yield biotinylated cRNA according to the manufacturer’s instructions. Briefly, 550 ng of total RNA was reverse-transcribed to cDNA using a T7 oligo(dT) primer. Second-strand cDNA was synthesized, in vitro transcribed, and labeled with biotin-NTP. After purification, the cRNA was quantified using the ND-1000 Spectrophotometer (NanoDrop, Wilmington, USA).

growth_protocol: ESCs were transferred onto inactivated MEF feeder layers, trypsinized, re-plated, and cultured in ESC medium (Dulbecco's modified Eagle's medium (DMEM; Gibco) supplemented with 15% fetal bovine serum (FBS; Gibco), 1× penicillin/streptomycin/glutamine, 1 mM nonessential amino acids (NEAA; Gibco), 0.1 mM β-mercaptoethanol (Gibco), and 1000 U/ml leukemia inhibitory factor (LIF; ESGRO, Chemicon).    Primary neurospheres were replated onto gelatinized dishes in NSC expansion medium: NS-A media (Euroclone) supplemented with N2 supplement, 10 ng/ml of EGF, and bFGF (Invitrogen), 50 mg/ml bovine serum albumin (BSA Fraction V; Gibco BRL), 1× penicillin/streptomycin/glutamine, and 1 × nonessential amino acids (Gibco BRL). Outgrowing cells were trypsinized, replated, and cultured in NSC expansion medium. NSCs were established by dissociation and replated onto gelatin-coated dishes in NSC expansion medium.

extract_protocol: Total RNA was extracted using Trizol (Invitrogen Life Technologies, Carlsbad, USA), purified using RNeasy columns (Qiagen, Valencia, USA) according to the manufacturers’ protocol. After processing with DNase digestion, clean-up procedures, RNA samples were quantified, aliquot and stored at -80°C until use. For quality control, RNA purity and integrity were evaluated by denaturing gel electrophoresis, OD 260/280 ratio, and analyzed on Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, USA).

treatment_protocol: Trypsinized single cells were washed with 1X PBS and centrifuged at 9000rpm for 3min prior to store at -70'C

value: Brain-NSCs (from 13.5dpc fetuses, ROSA26/OG2 heterozygous double transgenic)


title: aft2 under 0.5 h iron starvation, replicate 2


title: NED-NSC_rep2

description: Normal region-derived

source_name: 13.5dpc, Brain-derived

value: NED-NSCs (normal embryo-derived)


title: ESC_rep1

source_name: 3.5dpc blastocyst-derived

value: ESCs (OG2 heterozygous double transgenic)


title: ESC_rep2


title: NSC_rep1


title: aft2 under 0 h iron starvation, replicate 2


title: ftr1 under 0 h iron starvation, replicate 2


title: ftr1 under 0.5 h iron starvation, replicate 2


title: ftr1 under 1 h iron starvation, replicate 2


title: sef1 under 0 h iron starvation, replicate 2


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL23]

city: La Laguna

first: Emma

last: Carmelo

state: SANTA CRUZ DE TENERIFE

address: C/ Astrofisico Francisco Sanchez s/n, Campus de Anchieta

department: University Institute of Tropical Diseases and Public Health

country: Spain

institute: University of La Laguna

description: TEST

data_processing:
Cq values from the 47 samples analyzed were exported for normalization using three different algorithms: geNorm (qBasePLUS software (Biogazelle, Gent, Belgium)), NormFinder (http://moma.dk/normfinder-software) and RefFinder (http://fulxie.0fees.us/?type=reference).
The sample data table includes the normalized data using Il2rg+Itgb2 as reference genes, as identified and validated in our paper.
The 'Polr2a_Tbp_normalized.tx't includes the data normalized using Polr2a+Tbp as reference genes, two reference genes traditionally used in the literature for this model.

label: FAM

label_protocol:
The reverse transcription was performed with 2 ug of RNA with random hexamers using the High Capacity cDNA Reverse Transcription Kit (Life Technologies, Carlsbad, CA) according to manufacturer’s instructions.
Real-time PCR and fluorescence detection were performed using QuantStudio 12K Flex Real-Time PCR System (Life  Technologies, Carlsbad, CA) following manufacturer’s instructions, using Custom TaqMan OpenArray Real-Time PCR Plates

growth_protocol: 47 BALB/c (purchased to Charles River Laboratories, France) mice (14-15 weeks old) were used  in this study. Mice were randomly separated in two groups: (i) 23 control mice and (ii) 24 mice  that were infected with 10^6 stationary-phase L. infantum promastigotes via tail vein. Mice were euthanized by cervical dislocation and spleens were removed and immediately stored in RNAlater at -70ºC (Sigma-Aldrich, St. Louis, USA).

extract_protocol: Total RNA isolation from spleens (9-11 mg) was performed by cell disruption using FastPrep®  System (ProScientific, Cedex, France) and Lysing Matrix D (MP Biomedicals, Solon, USA) in TRI-Reagent (Sigma-Aldrich, St. Louis, USA). RNeasy Mini Kit (Qiagen) was subsequently used for mRNA enrichment following manufacturer’s instructions

treatment_protocol: 24 out of the 47 mice were infected with 10^6 stationary-phase L. infantum promastigotes via tail vein.

value: Balb/c

tag: age

value: 14-15 weeks old

tag: infected with

value: spleen


title: sef1 under 0.5 h iron starvation, replicate 3


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL24]

description: TEST

value: 10^6 stationary-phase L. infantum promastigotes via tail vein


title: iPS-NSC#3_rep1

source_name: iPS-derived NSC, In vitro differentiated

value: iPS-NSCs (In vitro differentiated)


title: iPS-cNSCs_rep2

description: Chimeric region-derived

value: iPS-cNSCs (In vivo differentiated, chimeric)


title: iPS-NSC#1_rep1


title: ftr1 under 0.5 h iron starvation, replicate 3

value: 4 h


title: NED-NSC_rep1

description: Normal region-derived


title: iPS-NSC#1_rep2


title: MEF_rep1

value: MEFs (from 13.5dpc fetuses, ROSA26/OG2 heterozygous double transgenic)


title: iPS-cNSCs_rep1

description: Chimeric region-derived


title: MEF_rep2


title: iPS-NSC#3_rep2


title: Wild type under 0.5 h iron starvation, replicate 2


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL22]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL21]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL19]

description: TEST


title: aft2 under 0.5 h iron starvation, replicate 3


title: Mt2-mmp(-/-) mammary gland, biological replicate 2

city: Ann Arbor

first: Stephen

middle: J.

last: Weiss

state: MI

address: 210 Washtenaw Avenue

department: Life Sciences Institute

institute: University of Michigan

description: Gene expression data from intact mammary epithelium-containing inguinal mammary gland tissue harvested from postnatal day 10 mice

hyb_protocol: Following labeling procedure, 9.97 ug of cDNA were hybridized at 45C on HT-MG 430 arrays, and were washed and stained using the Affymetrix Gene Atlas system (software version 1.0.4.267).

scan_protocol: Peg Arrays were scanned using the Affymetrix Gene Atlas system (software version 1.0.4.267)

data_processing: Data was analyzed using the affy Bioconductor package implemented in the R-statistical environment version 3.0.0. RMA was used to fit log2 transformed expression values.

source_name: Intact inguinal mammary gland

label_protocol: Biotinylated aRNA were prepared according to the Affymetrix GeneChip 3’ IVT Express kit protocol from 200 ng total RNA (Affymetrix GeneAtlas 3’ IVT Express kit Instruction Manual, P/N 702833 Rev. 4).

growth_protocol: Intact mammary epithelium-containing inguinal mammary gland tissue was harvested from postnatal day 10 mice

extract_protocol: Mammary tissue was flash frozen in liquid nitrogen and homogenized in 1mL TRIzol (Ambion, Life Technologies). Total RNA was extracted with chloroform according to standard protocols and purified with QIAGEN Rneasy Mini-kit columns.

value: postnatal day 10

tag: genotype/variation


title: Spleen of non-infected Balb/c mice [Ba-nr23]

description: CONTROL

source_name: Spleen of non-infected Balb/c mice

value: none (control)


title: Spleen of non-infected Balb/c mice [Ba-nr22]

description: CONTROL


title: Mt2-mmp(+/+) mammary gland, biological replicate 2


title: Mt2-mmp(-/-) mammary gland, biological replicate 1


title: Spleen of non-infected Balb/c mice [Ba-nr21]

description: CONTROL


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL17]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL18]

description: TEST


title: Spleen of non-infected Balb/c mice [Ba-nr18]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr19]

description: CONTROL


title: Mt2-mmp(+/+) mammary gland, biological replicate 1


title: Mt1-mmp(-/-) mammary gland, biological replicate 2

data_processing: Data was analyzed using the affy Bioconductor package implemented in the R-statistical environment version 2.15.1. RMA was used to fit log2 transformed expression values.

growth_protocol: Intact mammary epithelium-containing inguinal mammary gland tissue was harvested from postnatal day 10 mice.


title: Wild type under 0.5 h iron starvation, replicate 3


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL20]

description: TEST


title: Mt1-mmp(-/-) mammary gland, biological replicate 1


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL16]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL15]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL14]

description: TEST


title: Mt1-mmp(+/+) mammary gland, biological replicate 1


title: Spleen of non-infected Balb/c mice [Ba-nr20]

description: CONTROL


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL13]

description: TEST


title: Mt1-mmp(+/+) mammary gland, biological replicate 2


title: Spleen of non-infected Balb/c mice [Ba-nr17]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr16]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr15]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr13]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr14]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr12]

description: CONTROL


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL12]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL10]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL11]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL9]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL8]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL7]

description: TEST


title: Spleen of non-infected Balb/c mice [Ba-nr9]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr10]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr8]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr11]

description: CONTROL


title: Spleen of non-infected Balb/c mice [Ba-nr6]

description: CONTROL


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL6]

description: TEST


title: Spleen of non-infected Balb/c mice [Ba-nr7]

description: CONTROL


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL5]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL4]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL1]

description: TEST


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL3]

description: TEST


title: Prefrontal cortex_BTBR_replicate_2

city: Dublin

first: David

last: Henshall

address: 123 St Stephens Green

country: Ireland

institute: Royal College of Surgeons in Ireland

description: Test

data_processing:
All analyses were performed in R Bioconductor (R Core Team, 2016; Huber et al., 2015). The data was filtered as follows, if the cycle threshold (Ct) score for any miRNA in any sample was was > 35, then the Ct score was set to 40 (i.e. it was considered “Undetermined”). If the Ct was “Undetermined” in 4 or more samples for any miRNA then that miRNA was removed. The data was quantile-normalized and re-filtered by setting any Ct score that was > 30 to 40 (i.e. “Undetermined”). Again, if the Ct was “Undetermined” in 4 or more samples for any miRNA then that miRNA was removed. Using these criteria 306 miRNAs remained for the final data analysis. Differential expression analysis was performed by applying a Student’s t-test to the normalized Ct values between the two conditions and the p-values were adjusted for multiple testing by controlling the false discovery rate (FDR) according to the method of Benjamini and Hochberg (Benjamini and Hochberg, 1995). A miRNA was considered to be differentially expressed if the adjusted p-value was ≤ 0.05. The relative quantification (FC) was calculated as RQ = 2^−∆∆CT .
Fold Change worksheet reports FC, ΔΔCt, mean Control (B6), mean BTBR, t.test, p.value and adj.p.value. FC was calculated as 2^-ΔΔCt, where -ΔΔCt = -[ΔCt_test -Δct_control]. A Student’s t-test was applied to the normalized Ct values between the two conditions and the p-values were adjusted for multiple testing by controlling the false discovery rate (FDR) according to the method of Benjamini and Hochberg (Benjamini and Hochberg, 1995).

source_name: BTBR prefrontal cortex

label_protocol: 100ng of total RNA was processed by reverse transcriptase and pre-amplification steps following the manufacturer’s protocol (Applied Biosystems). The pre-amplification reaction was mixed with TaqMan OpenArray Real-Time PCR Master mix (1:1). The mix was loaded onto the OpenArray rodent panel (750 mouse/rat miRNAs) using the Accufill System and ran using a QuantStudio 12K Flex PCR (Life Technologies).

extract_protocol: RNAs from dissected prefrontal cortices (n=3 per experimental group) were purified using standard column purification according to the manufacturer’s protocol (RNAeasy Mini Kit, QIAGEN). RNA quality was analyzed by microfluidic gel electrophoresis on RNA 6000 NanoChips using the Agilent 2100 Bioanalyzer. Only RNA with a high (9) RNA integrity number was selected and used for subsequent retrotranscription, labeling, and array hybridization according to Agilent protocols.

treatment_protocol: Mice were housed in standard cages and received no pharmacological treatment. Prefrontal cortices were freshly dissected and frozen on dry ice.

tag: strain background

value: BTBR T+ Itpr3tf/J

tag: gender

value: male

value: 5 months

value: whole prefrontal cortex


title: Y094_tcell_Impaired

type: genomic

city: New York

first: Michael

last: Corley

state: NY

address: 413 East 69th Street

department: Medicine, Division of Infectious Diseases

institute: Weill Cornell Medicine

description: HIV+ Impaired T cell

hyb_protocol: Illumina Infinium protocol.

scan_protocol: Illumina Infinium protocol. Scanned using Illumina HiScan System.

data_processing: Data loaded into R using RnBeads 0.99.18, background subtracted using methylumi, and normalized using SWAN.

label: Cy5 and Cy3

molecule: genomic DNA

source_name: peripheral blood isolated CD8+ cells (T cells)

label_protocol: Illumina Infinium protocol.

extract_protocol: Human Monocytes and CD8+ T cells were isolated using magnetic beads from cryopreserved peripheral blood mononuclear cells using the manufacturer's protocol and DNA/RNA was extracted using Allprep DNA/RNA Mini Kit

tag: group

value: HAD

value: T cell

tag: education

tag: logvl

tag: sample type

value: HIV+ Impaired T cell


title: Prefrontal cortex_BTBR_replicate_3

description: Test

tag: tissue


title: Spleen of non-infected Balb/c mice [Ba-nr5]

description: CONTROL

tag: strain

value: Balb/c


title: Y105_tcell_Impaired

description: HIV+ Impaired T cell

tag: cell type


title: Y082_tcell_Impaired

description: HIV+ Impaired T cell

value: MC/MD


title: Y103_tcell

description: HIV+ Non-impaired T cell

value: Control

value: HIV+ Non-impaired T cell


title: Y065_tcell

description: HIV+ Non-impaired T cell


title: Prefrontal cortex_C57Bl6_replicate_3

description: Control

source_name: C57BL/6J prefrontal cortex

value: wild type


title: Spleen of non-infected Balb/c mice [Ba-nr4]

description: CONTROL

value: 14-15 weeks old

value: spleen


title: Prefrontal cortex_C57Bl6_replicate_2

description: Control


title: Prefrontal cortex_C57Bl6_replicate_1

description: Control


title: Spleen of non-infected Balb/c mice [Ba-nr3]

description: CONTROL


title: Y118_tcell_Impaired

description: HIV+ Impaired T cell


title: Spleen of non-infected Balb/c mice [Ba-nr1]

description: CONTROL


title: X732 genomic DNA from whole blood

status: Public on Oct 04 2016

city: Uppsala

first: Åsa

last: Johansson

state: Sweden

address: BMC, Husarg 3

department: IGP

country: Sweden

institute: Uppsala University

description: normal whole blood

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing:
IDAT files were preprocessed and converted into beta value by minfi Bioconductor package
Tab-delimited .txt files reporting normalized (SWAN) Average Beta values are linked as supplementary files on the Series record.

source_name: whole blood

label_protocol: Standard Illumina Protocol

extract_protocol: phenol:chloroform protocol

value: Male

value: whole blood

tag: disease state

value: normal


title: Y008_Monocyte

description: HIV+ impaired monocyte

source_name: peripheral blood isolated CD14+ cells (monocytes)

value: Monocyte

value: HIV+ impaired monocyte


title: Y028_tcell

description: HIV+ Non-impaired T cell

value: male


title: Y078A_Monocyte

description: HIV+ Non-impaired monocyte

value: HIV+ Non-impaired monocyte


title: X731 genomic DNA from whole blood

description: normal whole blood

value: Female


title: Spleen of non-infected Balb/c mice [Ba-nr2]

description: CONTROL

value: none (control)


title: X730 genomic DNA from whole blood

description: normal whole blood


title: Y168Z_Monocyte_Impaired

description: HIV+ impaired monocyte

value: HAD


title: X728 genomic DNA from whole blood

description: normal whole blood


title: X729 genomic DNA from whole blood

description: normal whole blood


title: X726 genomic DNA from whole blood

description: normal whole blood


title: Reticular dermis

city: Showa-ku, Nagoya

first: Yasushi

last: Date

address: 65 Tsurumai-cho

department: Graduate School of Medicine

country: Japan

institute: Nagoya University

hyb_protocol: The Gene Expression Hybridization Kit (Agilent) was used according to the manufacturer's instructions.

scan_protocol: The samples were scanned  on the Agilent DNA Microarray Scanner. The scanned images were analyzed with Agilent Feature Extraction Software 10.7.3.1.

data_processing: The Data was log2 transformed and normalized by quantile normalization by the Subio Platform 1.18 (Subio, Japan).

source_name: microdissected reticular dermis

label_protocol: The Ovation PicoSL WTA System V2 (NuGEN Technologies, San Carlos, CA) was used to amplify cDNA from total RNA. Cyanine-3 (Cy3) labeled cDNA was prepared from 1.8 ug cDNA using the SureTag DNA Labeling Kit (Agilent Technologies, Santa Clara, CA) according to the manufacturer's instructions.

extract_protocol: Total RNA was extracted using the RNeasy micro kit (Qiagen, Hilden, Germany) according   to the manufacturer's instructions.

value: microdissected reticular dermis

tag: tissue type

value: normal skin


title: Y068_Monocyte

description: HIV+ Non-impaired monocyte

value: Control


title: X724 genomic DNA from whole blood

description: normal whole blood


title: Y160L_Monocyte

description: HIV+ Non-impaired monocyte

value: female


title: X725 genomic DNA from whole blood

description: normal whole blood


title: X723 genomic DNA from whole blood

description: normal whole blood


title: X722 genomic DNA from whole blood

description: normal whole blood


title: X721 genomic DNA from whole blood

description: normal whole blood


title: X727 genomic DNA from whole blood

description: normal whole blood


title: X720 genomic DNA from whole blood

description: normal whole blood


title: X718 genomic DNA from whole blood

description: normal whole blood


title: X719 genomic DNA from whole blood

description: normal whole blood


title: Y136C_Monocyte

description: HIV+ Non-impaired monocyte


title: Y211T_Monocyte_Impaired

description: HIV+ impaired monocyte


title: Y037_Monocyte_Impaired

description: HIV+ impaired monocyte

value: MC/MD


title: X717 genomic DNA from whole blood

description: normal whole blood


title: Papillary dermis

source_name: microdissected papillary dermis

value: microdissected papillary dermis


title: X716 genomic DNA from whole blood

description: normal whole blood


title: Y060_Monocyte_Impaired

description: HIV+ impaired monocyte


title: Y213P_Monocyte_Impaired

description: HIV+ impaired monocyte


title: Y106_Monocyte

description: HIV+ Non-impaired monocyte


title: X714 genomic DNA from whole blood

description: normal whole blood


title: Y041S_Monocyte

description: HIV+ Non-impaired monocyte


title: Y113_Monocyte_Impaired

description: HIV+ impaired monocyte


title: Y135S_Monocyte

description: HIV+ Non-impaired monocyte


title: X709 genomic DNA from whole blood

description: normal whole blood


title: Prefrontal cortex_BTBR_replicate_1

description: Test

value: BTBR T+ Itpr3tf/J

value: 5 months

value: whole prefrontal cortex


title: X712 genomic DNA from whole blood

description: normal whole blood

value: whole blood

value: normal


title: X704 genomic DNA from whole blood

description: normal whole blood

value: Male


title: X706 genomic DNA from whole blood

description: normal whole blood


title: X708 genomic DNA from whole blood

description: normal whole blood


title: X707 genomic DNA from whole blood

description: normal whole blood


title: X700 genomic DNA from whole blood

description: normal whole blood


title: X698 genomic DNA from whole blood

description: normal whole blood


title: X711 genomic DNA from whole blood

description: normal whole blood


title: X699 genomic DNA from whole blood

description: normal whole blood


title: X695 genomic DNA from whole blood

description: normal whole blood


title: X703 genomic DNA from whole blood

description: normal whole blood


title: X701 genomic DNA from whole blood

description: normal whole blood


title: X705 genomic DNA from whole blood

description: normal whole blood


title: X713 genomic DNA from whole blood

description: normal whole blood


title: X702 genomic DNA from whole blood

description: normal whole blood


title: X697 genomic DNA from whole blood

description: normal whole blood


title: X696 genomic DNA from whole blood

description: normal whole blood


title: X694 genomic DNA from whole blood

description: normal whole blood


title: X715 genomic DNA from whole blood

description: normal whole blood


title: X693 genomic DNA from whole blood

description: normal whole blood


title: X689 genomic DNA from whole blood

description: normal whole blood


title: X690 genomic DNA from whole blood

description: normal whole blood


title: X692 genomic DNA from whole blood

description: normal whole blood


title: X685 genomic DNA from whole blood

description: normal whole blood


title: X688 genomic DNA from whole blood

description: normal whole blood


title: X691 genomic DNA from whole blood

description: normal whole blood


title: X684 genomic DNA from whole blood

description: normal whole blood


title: X687 genomic DNA from whole blood

description: normal whole blood


title: X686 genomic DNA from whole blood

description: normal whole blood


title: X674 genomic DNA from whole blood

description: normal whole blood


title: X673 genomic DNA from whole blood

description: normal whole blood


title: X683 genomic DNA from whole blood

description: normal whole blood


title: X682 genomic DNA from whole blood

description: normal whole blood


title: X680 genomic DNA from whole blood

description: normal whole blood


title: X668 genomic DNA from whole blood

description: normal whole blood


title: X677 genomic DNA from whole blood

description: normal whole blood


title: X681 genomic DNA from whole blood

description: normal whole blood


title: X679 genomic DNA from whole blood

description: normal whole blood


title: X676 genomic DNA from whole blood

description: normal whole blood


title: X675 genomic DNA from whole blood

description: normal whole blood


title: X671 genomic DNA from whole blood

description: normal whole blood


title: X670 genomic DNA from whole blood

description: normal whole blood


title: X710 genomic DNA from whole blood

description: normal whole blood


title: X678 genomic DNA from whole blood

description: normal whole blood


title: X667 genomic DNA from whole blood

description: normal whole blood


title: X666 genomic DNA from whole blood

description: normal whole blood


title: X663 genomic DNA from whole blood

description: normal whole blood


title: X669 genomic DNA from whole blood

description: normal whole blood


title: X662 genomic DNA from whole blood

description: normal whole blood


title: X657 genomic DNA from whole blood

description: normal whole blood


title: X660 genomic DNA from whole blood

description: normal whole blood


title: X659 genomic DNA from whole blood

description: normal whole blood


title: X665 genomic DNA from whole blood

description: normal whole blood


title: X672 genomic DNA from whole blood

description: normal whole blood


title: X664 genomic DNA from whole blood

description: normal whole blood


title: X653 genomic DNA from whole blood

description: normal whole blood


title: X655 genomic DNA from whole blood

description: normal whole blood


title: X654 genomic DNA from whole blood

description: normal whole blood


title: X661 genomic DNA from whole blood

description: normal whole blood


title: X658 genomic DNA from whole blood

description: normal whole blood


title: X651 genomic DNA from whole blood

description: normal whole blood


title: X650 genomic DNA from whole blood

description: normal whole blood


title: X647 genomic DNA from whole blood

description: normal whole blood


title: X648 genomic DNA from whole blood

description: normal whole blood


title: X646 genomic DNA from whole blood

description: normal whole blood


title: X649 genomic DNA from whole blood

description: normal whole blood


title: X643 genomic DNA from whole blood

description: normal whole blood


title: X645 genomic DNA from whole blood

description: normal whole blood


title: X644 genomic DNA from whole blood

description: normal whole blood


title: X652 genomic DNA from whole blood

description: normal whole blood


title: X642 genomic DNA from whole blood

description: normal whole blood


title: X641 genomic DNA from whole blood

description: normal whole blood


title: X656 genomic DNA from whole blood

description: normal whole blood


title: Spleen of Leishmania-infected Balb/c mice [Ba-rL2]

description: TEST

value: Balb/c

value: 14-15 weeks old

value: 10^6 stationary-phase L. infantum promastigotes via tail vein

value: spleen


title: X638 genomic DNA from whole blood

description: normal whole blood


title: X639 genomic DNA from whole blood

description: normal whole blood

value: Female


title: X634 genomic DNA from whole blood

description: normal whole blood


title: X633 genomic DNA from whole blood

description: normal whole blood


title: X637 genomic DNA from whole blood

description: normal whole blood


title: X635 genomic DNA from whole blood

description: normal whole blood


title: X628 genomic DNA from whole blood

description: normal whole blood


title: X630 genomic DNA from whole blood

description: normal whole blood


title: X632 genomic DNA from whole blood

description: normal whole blood


title: X625 genomic DNA from whole blood

description: normal whole blood


title: X627 genomic DNA from whole blood

description: normal whole blood


title: X629 genomic DNA from whole blood

description: normal whole blood


title: X622 genomic DNA from whole blood

description: normal whole blood


title: X623 genomic DNA from whole blood

description: normal whole blood


title: X620 genomic DNA from whole blood

description: normal whole blood


title: X618 genomic DNA from whole blood

description: normal whole blood


title: X636 genomic DNA from whole blood

description: normal whole blood


title: X617 genomic DNA from whole blood

description: normal whole blood


title: X616 genomic DNA from whole blood

description: normal whole blood


title: X621 genomic DNA from whole blood

description: normal whole blood


title: X631 genomic DNA from whole blood

description: normal whole blood


title: X640 genomic DNA from whole blood

description: normal whole blood


title: X614 genomic DNA from whole blood

description: normal whole blood


title: X615 genomic DNA from whole blood

description: normal whole blood


title: X619 genomic DNA from whole blood

description: normal whole blood


title: X613 genomic DNA from whole blood

description: normal whole blood


title: X611 genomic DNA from whole blood

description: normal whole blood


title: X610 genomic DNA from whole blood

description: normal whole blood


title: X607 genomic DNA from whole blood

description: normal whole blood


title: X626 genomic DNA from whole blood

description: normal whole blood


title: X612 genomic DNA from whole blood

description: normal whole blood


title: X604 genomic DNA from whole blood

description: normal whole blood


title: X624 genomic DNA from whole blood

description: normal whole blood


title: X608 genomic DNA from whole blood

description: normal whole blood


title: X606 genomic DNA from whole blood

description: normal whole blood


title: X605 genomic DNA from whole blood

description: normal whole blood


title: X603 genomic DNA from whole blood

description: normal whole blood


title: X600 genomic DNA from whole blood

description: normal whole blood


title: X601 genomic DNA from whole blood

description: normal whole blood


title: X599 genomic DNA from whole blood

description: normal whole blood


title: X597 genomic DNA from whole blood

description: normal whole blood


title: X595 genomic DNA from whole blood

description: normal whole blood


title: X594 genomic DNA from whole blood

description: normal whole blood


title: X592 genomic DNA from whole blood

description: normal whole blood


title: X596 genomic DNA from whole blood

description: normal whole blood


title: X591 genomic DNA from whole blood

description: normal whole blood


title: X587 genomic DNA from whole blood

description: normal whole blood


title: X589 genomic DNA from whole blood

description: normal whole blood


title: X593 genomic DNA from whole blood

description: normal whole blood


title: X598 genomic DNA from whole blood

description: normal whole blood


title: X586 genomic DNA from whole blood

description: normal whole blood


title: X588 genomic DNA from whole blood

description: normal whole blood


title: X585 genomic DNA from whole blood

description: normal whole blood


title: X590 genomic DNA from whole blood

description: normal whole blood


title: X609 genomic DNA from whole blood

description: normal whole blood


title: X584 genomic DNA from whole blood

description: normal whole blood


title: X602 genomic DNA from whole blood

description: normal whole blood


title: X582 genomic DNA from whole blood

description: normal whole blood


title: X580 genomic DNA from whole blood

description: normal whole blood


title: X581 genomic DNA from whole blood

description: normal whole blood


title: X577 genomic DNA from whole blood

description: normal whole blood


title: X576 genomic DNA from whole blood

description: normal whole blood


title: X573 genomic DNA from whole blood

description: normal whole blood


title: X572 genomic DNA from whole blood

description: normal whole blood


title: X578 genomic DNA from whole blood

description: normal whole blood


title: X570 genomic DNA from whole blood

description: normal whole blood


title: X569 genomic DNA from whole blood

description: normal whole blood


title: X571 genomic DNA from whole blood

description: normal whole blood


title: X579 genomic DNA from whole blood

description: normal whole blood


title: X568 genomic DNA from whole blood

description: normal whole blood


title: X567 genomic DNA from whole blood

description: normal whole blood


title: X583 genomic DNA from whole blood

description: normal whole blood


title: X566 genomic DNA from whole blood

description: normal whole blood


title: X563 genomic DNA from whole blood

description: normal whole blood


title: X565 genomic DNA from whole blood

description: normal whole blood


title: X574 genomic DNA from whole blood

description: normal whole blood


title: X564 genomic DNA from whole blood

description: normal whole blood


title: X575 genomic DNA from whole blood

description: normal whole blood


title: X561 genomic DNA from whole blood

description: normal whole blood


title: X562 genomic DNA from whole blood

description: normal whole blood


title: X560 genomic DNA from whole blood

description: normal whole blood


title: X559 genomic DNA from whole blood

description: normal whole blood


title: X558 genomic DNA from whole blood

description: normal whole blood


title: p12

city: Padova

first: Luca

last: Trentin

address: Via Giustiniani, 3

department: Department of Women's and Children's Health

country: Italy

institute: University of Padova

description: Gene expression data from leukemia samples at diagnosis_ batch 1

hyb_protocol: 15 ug of cRNA were fragmented and hybridized for 16 hr at 45°C on GeneChip Human Genome U133 Plus 2.0 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Scan GCS3000.

data_processing: The data were normalized using R software [www.r-ptoject.org] with BioConductor package [www.bioconductor.org] using RMA and batch effetcs were removed using the sva package

source_name: leukemia cell isolated from PB at diagnosis

label_protocol: Biotinylated cRNAs were prepared according to the standard Affymetrix protocol

extract_protocol: RNA was extracted using Trizol.

value: MLL-AF4 pediatric leukemia

tag: individual

tag: hoxa9/hoxa10 level

value: high

tag: k-ras/n-ras status

value: mut

value: PB

value: leukemia cell


title: p10

description: Gene expression data from leukemia samples at diagnosis_batch2


title: X557 genomic DNA from whole blood

description: normal whole blood

tag: age


title: p21


title: p13


title: p20

value: wt


title: X556 genomic DNA from whole blood

description: normal whole blood


title: p34


title: p24


title: p8


title: X554 genomic DNA from whole blood

description: normal whole blood


title: X555 genomic DNA from whole blood

description: normal whole blood


title: X553 genomic DNA from whole blood

description: normal whole blood


title: X552 genomic DNA from whole blood

description: normal whole blood


title: X551 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM095 - time: 32 hai - rep1

city: Ames

first: PLEXdb Curator

middle: Sudhansu

state: IA

address: 1023  Crop Genomes Informatics Lab (Iowa State University)

department: Virtual Reality Application Center

institute: Iowa State University

description: Two flats (each flat contained 75 doubled-haploid lines + 4 replicates of each parent = 81 cones/flat) plus CI 16137 (as an internal Mla1 allele control) were grown in a completely randomized design in the Arabidopsis Growth Facility in the Bessey Hall Greenhouse at Iowa State University, Ames, IA USA and transferred to a controlled growth chamber after 7 days. Seedlings were inoculated with B. graminis f. sp. hordei isolate 5874 (AVRa1, AVRa6, AVRa12) at 1600 hours US Central Standard Time.  Lights in the growth chamber were “off” from 4 PM to 12 AM and were “on” from 12:01 AM to 3:59 PM CST.  Seedling first leaves were collected and frozen in liquid nitrogen at 16 ad 32 hours after inoculation (HAI).  Five seedlings were harvested, pooled, and placed in liquid nitrogen for each line in the population within a 20 minute period at 16 and 32 HAI. (May still include original submitter created erros/discrepancies)

hyb_protocol: Affy- Eukaryotic Target Hybridization

scan_protocol: Affy- Array Scanning

data_processing: The MAS5.0 Normalization was performed using the justMAS function in the simpleaffy package of Bioconductor (www.bioconductor.org, Version: 2.12.1). The target value is 500 for all cases. The code was developed using R2.4.1 to 2.13.0, Bioconductor 1.9 to 2.12.1, and simpleaffy 2.8.0. to 2.28.0 The CDF files were downloaded from the Bioconductor website at http://www.bioconductor.org/packages/release/AffymetrixChip.html.

organism: Hordeum vulgare

source_name: tissue (genotype: QxSM095 - time: 32 hai)

label_protocol: Affy-Eukaryotic Target Preparation

growth_protocol: Growth Description:  Seedlings were grown in a temperature controlled green house (22˚C) for 7 days. Seedlings were then inoculated with B. graminis f. sp. hordei isolate 5874 (AVRa1, AVRa6, AVRa12) at 1600 hours US Central Standard Time and transferred to a growth chamber (18˚C) until tissue collection.  Lights in the growth chamber were “off” from 4 PM to 12 AM and were “on” from 12:01 AM to 3:59 PM CST.

extract_protocol: Hot Phenol/Guanidine Thiocyanate and RNeasy Clean up

tag: genotype

tag: time point

value: 32 hai

tag: agent

value: Blumeria graminis f. sp. hordei

tag: germplasm name

value: Accession # 18852

tag: organism part

value: vegetative cell ('PO:0020099')

tag: development stage

value: LP.01 one leaf visible ('PO:0007094')

value: 8 days

tag: growth media

value: peat/perlite/soil


title: genotype: CI 16137 - time: 16 hai - rep1

source_name: tissue (genotype: CI 16137 - time: 16 hai)

value: 16 hai

value: Accession # 15889


title: genotype: CI 16137 - time: 32 hai - rep1

source_name: tissue (genotype: CI 16137 - time: 32 hai)


title: p15

source_name: leukemia cell isolated from BM at diagnosis

value: BM


title: genotype: QxSM097 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM097 - time: 32 hai)

value: Accession # 18853


title: X549 genomic DNA from whole blood

description: normal whole blood

tag: gender

value: Female

value: whole blood

value: normal


title: X548 genomic DNA from whole blood

description: normal whole blood

tag: tissue


title: genotype: QxSM094 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM094 - time: 32 hai)

value: Accession # 18851


title: genotype: QxSM095 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM095 - time: 16 hai)


title: genotype: QxSM093 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM093 - time: 32 hai)

value: Accession # 18850


title: genotype: QxSM094 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM094 - time: 16 hai)


title: genotype: QxSM097 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM097 - time: 16 hai)


title: genotype: QxSM091 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM091 - time: 16 hai)

value: Accession # 18849


title: X546 genomic DNA from whole blood

description: normal whole blood

value: Male


title: X547 genomic DNA from whole blood

description: normal whole blood


title: X545 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM091 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM091 - time: 32 hai)

value: 32 hai

value: Blumeria graminis f. sp. hordei


title: X544 genomic DNA from whole blood

description: normal whole blood

source_name: whole blood


title: genotype: QxSM093 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM093 - time: 16 hai)

value: vegetative cell ('PO:0020099')


title: X543 genomic DNA from whole blood

description: normal whole blood


title: X550 genomic DNA from whole blood

description: normal whole blood


title: X542 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM090 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM090 - time: 16 hai)

value: Accession # 18848

value: LP.01 one leaf visible ('PO:0007094')


title: X541 genomic DNA from whole blood

description: normal whole blood


title: X539 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM089 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM089 - time: 16 hai)

value: Accession # 18847

value: 8 days

value: peat/perlite/soil


title: X540 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM088 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM088 - time: 32 hai)

value: Accession # 18846


title: genotype: QxSM089 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM089 - time: 32 hai)


title: X538 genomic DNA from whole blood

description: normal whole blood


title: X537 genomic DNA from whole blood

description: normal whole blood


title: X535 genomic DNA from whole blood

description: normal whole blood


title: X536 genomic DNA from whole blood

description: normal whole blood


title: X534 genomic DNA from whole blood

description: normal whole blood


title: X533 genomic DNA from whole blood

description: normal whole blood


title: X532 genomic DNA from whole blood

description: normal whole blood


title: X531 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM090 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM090 - time: 32 hai)


title: genotype: QxSM088 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM088 - time: 16 hai)

value: 16 hai


title: genotype: QxSM086 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM086 - time: 16 hai)

value: Accession # 18844


title: genotype: QxSM085 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM085 - time: 32 hai)

value: Accession # 18843


title: genotype: QxSM086 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM086 - time: 32 hai)


title: genotype: QxSM087 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM087 - time: 32 hai)

value: Accession # 18845


title: genotype: QxSM085 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM085 - time: 16 hai)


title: X529 genomic DNA from whole blood

description: normal whole blood

value: Female

value: whole blood

value: normal


title: X530 genomic DNA from whole blood

description: normal whole blood

value: Male


title: genotype: QxSM083 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM083 - time: 32 hai)

value: 32 hai

value: Accession # 18841


title: X528 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM084 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM084 - time: 16 hai)

value: Blumeria graminis f. sp. hordei

value: Accession # 18842

value: vegetative cell ('PO:0020099')


title: X527 genomic DNA from whole blood

description: normal whole blood


title: X526 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM087 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM087 - time: 16 hai)

value: LP.01 one leaf visible ('PO:0007094')


title: genotype: QxSM082 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM082 - time: 32 hai)

value: Accession # 18840

value: 8 days


title: genotype: QxSM082 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM082 - time: 16 hai)

value: peat/perlite/soil


title: X525 genomic DNA from whole blood

description: normal whole blood

source_name: whole blood


title: X524 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM084 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM084 - time: 32 hai)


title: X523 genomic DNA from whole blood

description: normal whole blood


title: X522 genomic DNA from whole blood

description: normal whole blood


title: X520 genomic DNA from whole blood

description: normal whole blood


title: X521 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM079 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM079 - time: 16 hai)

value: 16 hai

value: Accession # 18838


title: genotype: QxSM083 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM083 - time: 16 hai)


title: genotype: QxSM080 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM080 - time: 32 hai)

value: Accession # 18839


title: genotype: QxSM080 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM080 - time: 16 hai)


title: X518 genomic DNA from whole blood

description: normal whole blood


title: X517 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM078 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM078 - time: 32 hai)

value: Accession # 18837


title: genotype: QxSM078 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM078 - time: 16 hai)


title: X516 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM079 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM079 - time: 32 hai)


title: genotype: QxSM077 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM077 - time: 32 hai)

value: Accession # 18836


title: genotype: QxSM077 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM077 - time: 16 hai)


title: X515 genomic DNA from whole blood

description: normal whole blood

value: whole blood


title: X514 genomic DNA from whole blood

description: normal whole blood

value: Female

value: normal


title: X519 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM076 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM076 - time: 16 hai)

value: Accession # 18835


title: genotype: QxSM076 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM076 - time: 32 hai)

value: 32 hai


title: X510 genomic DNA from whole blood

description: normal whole blood

value: Male


title: X513 genomic DNA from whole blood

description: normal whole blood


title: X512 genomic DNA from whole blood

description: normal whole blood


title: X511 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM075 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM075 - time: 16 hai)

value: Blumeria graminis f. sp. hordei

value: Accession # 18834


title: X509 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM074 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM074 - time: 32 hai)

value: Accession # 18833

value: vegetative cell ('PO:0020099')

value: LP.01 one leaf visible ('PO:0007094')


title: genotype: QxSM074 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM074 - time: 16 hai)

value: 8 days

value: peat/perlite/soil


title: X507 genomic DNA from whole blood

description: normal whole blood


title: X506 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM070 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM070 - time: 32 hai)

value: Accession # 18830


title: genotype: QxSM069 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM069 - time: 32 hai)

value: Accession # 18829


title: genotype: QxSM075 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM075 - time: 32 hai)


title: genotype: QxSM070 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM070 - time: 16 hai)

value: 16 hai


title: genotype: QxSM073 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM073 - time: 32 hai)

value: Accession # 18832


title: genotype: QxSM073 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM073 - time: 16 hai)


title: X505 genomic DNA from whole blood

description: normal whole blood

source_name: whole blood

value: whole blood


title: genotype: QxSM068 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM068 - time: 32 hai)

value: Accession # 18828


title: genotype: QxSM069 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM069 - time: 16 hai)


title: X508 genomic DNA from whole blood

description: normal whole blood

value: normal


title: genotype: QxSM067 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM067 - time: 16 hai)

value: Accession # 18827


title: X503 genomic DNA from whole blood

description: normal whole blood


title: X502 genomic DNA from whole blood

description: normal whole blood

value: Female


title: genotype: QxSM067 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM067 - time: 32 hai)

value: 32 hai


title: genotype: QxSM066 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM066 - time: 16 hai)

value: Blumeria graminis f. sp. hordei

value: Accession # 18826


title: X501 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM066 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM066 - time: 32 hai)


title: genotype: QxSM065 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM065 - time: 16 hai)

value: Accession # 18825


title: X499 genomic DNA from whole blood

description: normal whole blood


title: X498 genomic DNA from whole blood

description: normal whole blood


title: X500 genomic DNA from whole blood

description: normal whole blood

value: Male


title: X497 genomic DNA from whole blood

description: normal whole blood


title: X496 genomic DNA from whole blood

description: normal whole blood


title: X504 genomic DNA from whole blood

description: normal whole blood


title: X495 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM068 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM068 - time: 16 hai)

value: vegetative cell ('PO:0020099')

value: LP.01 one leaf visible ('PO:0007094')


title: genotype: QxSM063 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM063 - time: 32 hai)

value: Accession # 18824

value: 8 days

value: peat/perlite/soil


title: X494 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM063 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM063 - time: 16 hai)

value: 16 hai


title: X493 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM065 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM065 - time: 32 hai)


title: X492 genomic DNA from whole blood

description: normal whole blood


title: X490 genomic DNA from whole blood

description: normal whole blood


title: X491 genomic DNA from whole blood

description: normal whole blood


title: X489 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM061 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM061 - time: 32 hai)

value: Accession # 18822


title: X488 genomic DNA from whole blood

description: normal whole blood

value: whole blood


title: genotype: QxSM061 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM061 - time: 16 hai)


title: genotype: QxSM062 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM062 - time: 32 hai)

value: Accession # 18823


title: genotype: QxSM058 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM058 - time: 32 hai)

value: Accession # 18819


title: genotype: QxSM060 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM060 - time: 32 hai)

value: Accession # 18821


title: genotype: QxSM059 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM059 - time: 32 hai)

value: Accession # 18820


title: X486 genomic DNA from whole blood

description: normal whole blood

source_name: whole blood

value: normal


title: genotype: QxSM062 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM062 - time: 16 hai)

value: Blumeria graminis f. sp. hordei


title: X487 genomic DNA from whole blood

description: normal whole blood

value: Female


title: genotype: QxSM057 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM057 - time: 32 hai)

value: 32 hai

value: Accession # 18818


title: X485 genomic DNA from whole blood

description: normal whole blood

value: Male


title: genotype: QxSM055 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM055 - time: 32 hai)

value: Accession # 18816

value: vegetative cell ('PO:0020099')

value: LP.01 one leaf visible ('PO:0007094')


title: genotype: QxSM058 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM058 - time: 16 hai)

value: 8 days

value: peat/perlite/soil


title: genotype: QxSM059 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM059 - time: 16 hai)

value: 16 hai


title: genotype: QxSM057 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM057 - time: 16 hai)


title: genotype: QxSM056 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM056 - time: 16 hai)

value: Accession # 18817


title: genotype: QxSM060 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM060 - time: 16 hai)


title: X483 genomic DNA from whole blood

description: normal whole blood

value: whole blood


title: genotype: QxSM052 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM052 - time: 32 hai)

value: Accession # 18814


title: X481 genomic DNA from whole blood

description: normal whole blood


title: X482 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM052 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM052 - time: 16 hai)


title: genotype: QxSM056 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM056 - time: 32 hai)


title: X480 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM054 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM054 - time: 16 hai)

value: Accession # 18815


title: genotype: QxSM050 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM050 - time: 16 hai)

value: Accession # 18813


title: X478 genomic DNA from whole blood

description: normal whole blood

value: normal


title: X477 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM054 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM054 - time: 32 hai)

value: Blumeria graminis f. sp. hordei


title: X476 genomic DNA from whole blood

description: normal whole blood

value: Female


title: X484 genomic DNA from whole blood

description: normal whole blood


title: X474 genomic DNA from whole blood

description: normal whole blood


title: X473 genomic DNA from whole blood

description: normal whole blood


title: X475 genomic DNA from whole blood

description: normal whole blood


title: X472 genomic DNA from whole blood

description: normal whole blood


title: X471 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM050 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM050 - time: 32 hai)

value: 32 hai


title: X468 genomic DNA from whole blood

description: normal whole blood


title: X469 genomic DNA from whole blood

description: normal whole blood


title: X470 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM055 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM055 - time: 16 hai)


title: genotype: QxSM048 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM048 - time: 32 hai)

value: Accession # 18811


title: genotype: QxSM049 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM049 - time: 16 hai)

value: Accession # 18812


title: genotype: QxSM046 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM046 - time: 32 hai)

value: Accession # 18809


title: genotype: QxSM045 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM045 - time: 16 hai)

value: Accession # 18808

value: vegetative cell ('PO:0020099')


title: genotype: QxSM047 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM047 - time: 32 hai)

value: Accession # 18810

value: LP.01 one leaf visible ('PO:0007094')

value: 8 days


title: X466 genomic DNA from whole blood

description: normal whole blood

source_name: whole blood

value: Male


title: X464 genomic DNA from whole blood

description: normal whole blood

value: whole blood


title: X465 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM048 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM048 - time: 16 hai)

value: 16 hai

value: peat/perlite/soil


title: X467 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM043 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM043 - time: 32 hai)

value: Accession # 18807


title: X463 genomic DNA from whole blood

description: normal whole blood

value: normal


title: X462 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM046 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM046 - time: 16 hai)

value: Blumeria graminis f. sp. hordei


title: genotype: QxSM041 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM041 - time: 32 hai)

value: Accession # 18805


title: genotype: QxSM042 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM042 - time: 32 hai)

value: 32 hai

value: Accession # 18806


title: genotype: QxSM041 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM041 - time: 16 hai)


title: X461 genomic DNA from whole blood

description: normal whole blood

value: Female


title: genotype: QxSM042 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM042 - time: 16 hai)


title: genotype: QxSM043 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM043 - time: 16 hai)


title: X457 genomic DNA from whole blood

description: normal whole blood


title: X459 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM039 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM039 - time: 32 hai)

value: Accession # 18804


title: X456 genomic DNA from whole blood

description: normal whole blood


title: X458 genomic DNA from whole blood

description: normal whole blood


title: X460 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM047 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM047 - time: 16 hai)


title: genotype: QxSM049 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM049 - time: 32 hai)

value: Accession # 18812


title: genotype: QxSM045 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM045 - time: 32 hai)

value: Accession # 18808

value: vegetative cell ('PO:0020099')


title: X455 genomic DNA from whole blood

description: normal whole blood


title: X454 genomic DNA from whole blood

description: normal whole blood


title: X453 genomic DNA from whole blood

description: normal whole blood


title: X452 genomic DNA from whole blood

description: normal whole blood


title: X451 genomic DNA from whole blood

description: normal whole blood


title: X450 genomic DNA from whole blood

description: normal whole blood


title: X448 genomic DNA from whole blood

description: normal whole blood


title: X449 genomic DNA from whole blood

description: normal whole blood


title: X446 genomic DNA from whole blood

description: normal whole blood


title: X447 genomic DNA from whole blood

description: normal whole blood


title: X445 genomic DNA from whole blood

description: normal whole blood


title: X444 genomic DNA from whole blood

description: normal whole blood


title: X443 genomic DNA from whole blood

description: normal whole blood


title: X442 genomic DNA from whole blood

description: normal whole blood


title: X441 genomic DNA from whole blood

description: normal whole blood


title: X440 genomic DNA from whole blood

description: normal whole blood


title: X438 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM038 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM038 - time: 16 hai)

value: Accession # 18803

value: LP.01 one leaf visible ('PO:0007094')


title: genotype: QxSM038 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM038 - time: 32 hai)

value: 8 days


title: genotype: QxSM039 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM039 - time: 16 hai)


title: genotype: QxSM037 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM037 - time: 32 hai)

value: Accession # 18802


title: X437 genomic DNA from whole blood

description: normal whole blood

source_name: whole blood

value: Male

value: whole blood


title: genotype: QxSM035 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM035 - time: 32 hai)

value: Accession # 18800

value: peat/perlite/soil


title: genotype: QxSM036 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM036 - time: 16 hai)

value: 16 hai

value: Blumeria graminis f. sp. hordei

value: Accession # 18801


title: genotype: QxSM036 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM036 - time: 32 hai)

value: 32 hai


title: genotype: QxSM037 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM037 - time: 16 hai)


title: X436 genomic DNA from whole blood

description: normal whole blood

value: Female

value: normal


title: X435 genomic DNA from whole blood

description: normal whole blood


title: X434 genomic DNA from whole blood

description: normal whole blood


title: X433 genomic DNA from whole blood

description: normal whole blood


title: X432 genomic DNA from whole blood

description: normal whole blood


title: X431 genomic DNA from whole blood

description: normal whole blood


title: X439 genomic DNA from whole blood

description: normal whole blood


title: X430 genomic DNA from whole blood

description: normal whole blood


title: X429 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM033 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM033 - time: 32 hai)

value: Accession # 18798


title: X428 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM035 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM035 - time: 16 hai)


title: X424 genomic DNA from whole blood

description: normal whole blood


title: X423 genomic DNA from whole blood

description: normal whole blood


title: X422 genomic DNA from whole blood

description: normal whole blood


title: X426 genomic DNA from whole blood

description: normal whole blood


title: X421 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM033 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM033 - time: 16 hai)


title: genotype: QxSM031 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM031 - time: 32 hai)

value: Accession # 18797


title: genotype: QxSM034 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM034 - time: 32 hai)

value: Accession # 18799

value: vegetative cell ('PO:0020099')


title: genotype: QxSM031 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM031 - time: 16 hai)

value: LP.01 one leaf visible ('PO:0007094')


title: X420 genomic DNA from whole blood

description: normal whole blood


title: X479 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM034 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM034 - time: 16 hai)

value: 8 days


title: X418 genomic DNA from whole blood

description: normal whole blood


title: X416 genomic DNA from whole blood

description: normal whole blood


title: X427 genomic DNA from whole blood

description: normal whole blood


title: X415 genomic DNA from whole blood

description: normal whole blood


title: X425 genomic DNA from whole blood

description: normal whole blood


title: X414 genomic DNA from whole blood

description: normal whole blood


title: X419 genomic DNA from whole blood

description: normal whole blood


title: X411 genomic DNA from whole blood

description: normal whole blood


title: X412 genomic DNA from whole blood

description: normal whole blood


title: X410 genomic DNA from whole blood

description: normal whole blood


title: X409 genomic DNA from whole blood

description: normal whole blood


title: X407 genomic DNA from whole blood

description: normal whole blood


title: X408 genomic DNA from whole blood

description: normal whole blood


title: X406 genomic DNA from whole blood

description: normal whole blood


title: X417 genomic DNA from whole blood

description: normal whole blood


title: X405 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM030 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM030 - time: 32 hai)

value: Accession # 18796


title: genotype: QxSM029 - time: 32 hai - rep1

source_name: tissue (genotype: QxSM029 - time: 32 hai)

value: Accession # 18795


title: X403 genomic DNA from whole blood

description: normal whole blood

value: Male

value: whole blood


title: genotype: QxSM030 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM030 - time: 16 hai)

value: peat/perlite/soil


title: X402 genomic DNA from whole blood

description: normal whole blood


title: X413 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM028 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM028 - time: 16 hai)

value: 16 hai

value: Accession # 18794


title: X400 genomic DNA from whole blood

description: normal whole blood


title: X399 genomic DNA from whole blood

description: normal whole blood


title: genotype: QxSM029 - time: 16 hai - rep1

source_name: tissue (genotype: QxSM029 - time: 16 hai)

value: Blumeria graminis f. sp. hordei