title: Mm_B6_Q111_F_wk18_hyb8711

description: gene expression mouse striatum

source_name: Q111 mouse striatum 18 weeks old


title: Mm_B6_WT_M_wk5_hyb8730

status: Public on Mar 01 2017

type: RNA

city: Seattle

first: Jocelynn

middle: Renee

last: Pearl

state: Washington

address: 401 Terry Ave N

country: USA

institute: Institute for Systems Biology

description: gene expression mouse striatum

hyb_protocol: Hybridized to Agilent-028005 SurePrint G3 8x60k Mouse Microarrays [GPL10787]

scan_protocol: Agilent Technologies Scanner G2505C

data_processing: performed quantile normalization and log2-transformation. We used ComBat (Johnson et al., 2007) to remove batch effects related to the date on which microarrays were hybridized. Linear models were fit using the limma R package (Smyth, 2005). Expression levels were extracted from Agilent microarray image files. Data were reduced by taking the mean expression value of duplicate probes within each array. Expression levels were then quantile normalized across arrays and log-transformed.For each array, we calculated a quality score (Q), using the formula: Q = sqrt((IRC/10)^2+Rho^2)/sqrt(2) where IRC is the count of in-range features on this array and Rho is the Spearman rank correlation coefficient comparing the rank-order of probe-level expression  on this array to the median rank-ordering of probes across all arrays. We removed low quality arrays at a threshold of Q < 0.8, determined by manual inspection of the data.

molecule: total RNA

organism: Mus musculus

source_name: WT mouse striatum 5 weeks old

label_protocol: 50 ng of total RNA was labeled with Agilent Low Input QuickAmp kit

growth_protocol: Heterozygous males of six different strains (129S2/SvPasCrl.HttQ111/+, FVB/NCrl.HttQ111/+, CD-1.HttQ111/+, C57BL/6J.HttQ92/+, C57BL/6J.HttQ50/+, C57BL/6J.Htt Q111/+) were crossed with wild type females of corresponding background strains in order to generate cohorts of age-matched heterozygous pups and WT controls for the time-course assigned tissue harvests. A tail snip was acquired at weaning (2-4-weeks) to determine the CAG repeat length of each mouse. One heterozygous animal and one age-matched wild type control animal from each strain were harvested three times weekly from 4 to 21 weeks of age. The sex of mice harvested at these times was randomized. An additional 5 female and 5 male heterozygous animals from the B6 Htt Q111 and CD1 Htt Q111 strains were harvested at 4, 8, 12, 16, and 21 weeks of age. Time of day of harvest was randomized within the hours of light in the mouse room, typically ≥3 hours after lights came on and ≥3 hours before lights went off.

extract_protocol: Total RNA extracted from individual mouse striata using Trizol following manufacturer's instructions

treatment_protocol: The right hemisphere of each animal's brain was microdissected.  Tissues were snap frozen and stored at -80°C.  The right hemisphere striata of each animal was used for isolation of RNA for transcriptional profiling.

tag: strain

tag: sample id

tag: mouse id

tag: allele nominal

value: WT

tag: allele actual

tag: date harvest

tag: time harvest

tag: date hyb

tag: Sex

value: M

tag: age (weeks)

tag: tissue

value: striatum


title: Mm_CD1_WT_F_wk10_hyb8669

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old

value: F


title: Mm_FVB_WT_M_wk5_hyb8652

description: gene expression mouse striatum

value: FVB


title: Mm_CD1_WT_M_wk14_hyb8645

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_B6_Q111_M_wk20_hyb8664

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_FVB_WT_F_wk6_hyb8602

description: gene expression mouse striatum

source_name: WT mouse striatum 6 weeks old


title: Mm_129_Q111_M_wk15_hyb8612

description: gene expression mouse striatum

source_name: Q111 mouse striatum 15 weeks old


title: Mm_CD1_WT_F_wk6_hyb8592

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk4_hyb8398

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_B6_WT_F_wk9_hyb8514

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_CD1_Q111_F_wk12_hyb8233

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_B6_Q111_M_wk16_hyb8212

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_129_Q111_M_wk16_hyb8298

description: gene expression mouse striatum


title: Mm_129_WT_F_wk9_hyb8334

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk10_hyb8452

description: gene expression mouse striatum

source_name: Q111 mouse striatum 10 weeks old


title: Mm_FVB_Q111_F_wk18_hyb8285

description: gene expression mouse striatum


title: Mm_B6_Q111_F_wk9_hyb8208

description: gene expression mouse striatum

source_name: Q111 mouse striatum 9 weeks old


title: Mm_B6_Q50_M_wk17_hyb8230

description: gene expression mouse striatum

source_name: Q50 mouse striatum 17 weeks old


title: Mm_CD1_Q111_M_wk16_hyb8244

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk13_hyb8426

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_CD1_Q111_M_wk8_hyb8445

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_WT_F_wk10_hyb8472

description: gene expression mouse striatum


title: Mm_129_WT_F_wk16_hyb8465

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_FVB_WT_M_wk8_hyb8420

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_CD1_WT_F_wk14_hyb8204

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk17_hyb8211

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk4_hyb8365

description: gene expression mouse striatum

source_name: WT mouse striatum 4 weeks old


title: Mm_CD1_Q111_F_wk4_hyb8286

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk12_hyb8573

description: gene expression mouse striatum

source_name: Q50 mouse striatum 12 weeks old


title: Mm_B6_Q111_F_wk12_hyb8377

description: gene expression mouse striatum


title: Mm_129_Q111_M_wk5_hyb8194

description: gene expression mouse striatum

source_name: Q111 mouse striatum 5 weeks old


title: Mm_B6_Q111_M_wk12_hyb8474

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk5_hyb8200

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_129_WT_M_wk17_hyb8364

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_B6_Q111_M_wk16_hyb8304

description: gene expression mouse striatum


title: Mm_129_WT_M_wk15_hyb8277

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_B6_WT_M_wk18_hyb8196

description: gene expression mouse striatum

source_name: WT mouse striatum 18 weeks old


title: Mm_CD1_WT_M_wk4_hyb8145

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk8_hyb7965

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk20_hyb7989

description: gene expression mouse striatum

source_name: Q50 mouse striatum 20 weeks old


title: Mm_B6_Q50_M_wk12_hyb8006

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk10_hyb8178

description: gene expression mouse striatum


title: Mm_B6_Q111_F_wk8_hyb8191

description: gene expression mouse striatum


title: Mm_FVB_Q111_F_wk20_hyb7975

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_FVB_Q111_F_wk17_hyb8185

description: gene expression mouse striatum

source_name: Q111 mouse striatum 17 weeks old


title: Mm_129_WT_F_wk13_hyb7937

description: gene expression mouse striatum


title: Mm_FVB_WT_M_wk12_hyb8180

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_B6_Q111_M_wk7_hyb8146

description: gene expression mouse striatum

source_name: Q111 mouse striatum 7 weeks old


title: Mm_B6_Q111_M_wk17_hyb7936

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk19_hyb7915

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_B6_Q111_M_wk16_hyb8165

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_129_Q111_M_wk6_hyb7980

description: gene expression mouse striatum

source_name: Q111 mouse striatum 6 weeks old


title: Mm_B6_WT_M_wk6_hyb8170

description: gene expression mouse striatum

source_name: WT mouse striatum 6 weeks old


title: Mm_129_WT_F_wk14_hyb7931

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_B6_Q111_F_wk5_hyb8048

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk9_hyb7874

description: gene expression mouse striatum

source_name: Q111 mouse striatum 9 weeks old


title: Mm_FVB_Q111_M_wk14_hyb7905

description: gene expression mouse striatum

source_name: Q111 mouse striatum 14 weeks old


title: Mm_B6_Q50_M_wk12_hyb7848

description: gene expression mouse striatum

source_name: Q50 mouse striatum 12 weeks old


title: Mm_B6_Q50_F_wk8_hyb7832

description: gene expression mouse striatum

source_name: Q50 mouse striatum 8 weeks old


title: Mm_129_Q111_M_wk9_hyb7840

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk20_hyb7828

description: gene expression mouse striatum


title: Mm_B6_Q111_F_wk11_hyb7827

description: gene expression mouse striatum

source_name: Q111 mouse striatum 11 weeks old


title: Mm_B6_Q111_M_wk8_hyb7811

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_129_WT_F_wk12_hyb7858

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk12_hyb7882

description: gene expression mouse striatum


title: Mm_B6_Q111_F_wk11_hyb7759

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk9_hyb7760

description: gene expression mouse striatum


title: Mm_FVB_WT_M_wk12_hyb7756

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk14_hyb7776

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk7_hyb7766

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_B6_Q92_M_wk18_hyb7601

description: gene expression mouse striatum

source_name: Q92 mouse striatum 18 weeks old


title: Mm_B6_WT_M_wk9_hyb8082

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_FVB_WT_F_wk11_hyb7757

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_B6_Q50_F_wk8_hyb7572

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk17_hyb7731

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_CD1_WT_M_wk19_hyb7773

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk18_hyb7553

description: gene expression mouse striatum

source_name: Q111 mouse striatum 18 weeks old


title: Mm_CD1_Q111_M_wk11_hyb7591

description: gene expression mouse striatum


title: Mm_B6_Q92_M_wk9_hyb7441

description: gene expression mouse striatum

source_name: Q92 mouse striatum 9 weeks old


title: Mm_B6_Q50_M_wk11_hyb7575

description: gene expression mouse striatum

source_name: Q50 mouse striatum 11 weeks old


title: Mm_B6_Q92_F_wk11_hyb7758

description: gene expression mouse striatum

source_name: Q92 mouse striatum 11 weeks old


title: Mm_129_Q111_F_wk8_hyb7638

description: gene expression mouse striatum


title: Mm_129_WT_F_wk20_hyb7516

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_B6_WT_M_wk11_hyb7714

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk15_hyb7770

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_B6_WT_F_wk17_hyb7500

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk12_hyb7411

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_129_Q111_M_wk18_hyb7527

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk16_hyb7749

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_B6_WT_F_wk14_hyb7636

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_CD1_Q111_M_wk8_hyb7558

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk16_hyb7472

description: gene expression mouse striatum

source_name: Q50 mouse striatum 16 weeks old


title: Mm_FVB_Q111_F_wk15_hyb7639

description: gene expression mouse striatum

source_name: Q111 mouse striatum 15 weeks old


title: Mm_CD1_WT_F_wk8_hyb7387

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_FVB_Q111_F_wk17_hyb7359

description: gene expression mouse striatum

source_name: Q111 mouse striatum 17 weeks old


title: Mm_129_WT_F_wk6_hyb7341

description: gene expression mouse striatum

source_name: WT mouse striatum 6 weeks old


title: Mm_CD1_WT_M_wk5_hyb7354

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_B6_WT_M_wk12_hyb7385

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_B6_Q92_F_wk19_hyb7340

description: gene expression mouse striatum

source_name: Q92 mouse striatum 19 weeks old


title: Mm_129_WT_M_wk11_hyb7181

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_B6_Q50_M_wk16_hyb7099

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk11_hyb7282

description: gene expression mouse striatum


title: Mm_B6_Q92_F_wk6_hyb7150

description: gene expression mouse striatum

source_name: Q92 mouse striatum 6 weeks old


title: Mm_B6_WT_M_wk19_hyb7309

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_B6_Q50_M_wk20_hyb7042

description: gene expression mouse striatum

source_name: Q50 mouse striatum 20 weeks old


title: Mm_B6_Q92_M_wk20_hyb7081

description: gene expression mouse striatum

source_name: Q92 mouse striatum 20 weeks old


title: Mm_B6_WT_F_wk16_hyb7320

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_FVB_Q111_F_wk14_hyb7003

description: gene expression mouse striatum

source_name: Q111 mouse striatum 14 weeks old


title: Mm_B6_WT_F_wk19_hyb7000

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk15_hyb7164

description: gene expression mouse striatum

source_name: Q50 mouse striatum 15 weeks old


title: Mm_B6_Q50_M_wk19_hyb6997

description: gene expression mouse striatum

source_name: Q50 mouse striatum 19 weeks old


title: Mm_B6_Q50_M_wk18_hyb7292

description: gene expression mouse striatum

source_name: Q50 mouse striatum 18 weeks old


title: Mm_CD1_Q111_M_wk4_hyb7221

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_B6_Q50_M_wk10_hyb6990

description: gene expression mouse striatum

source_name: Q50 mouse striatum 10 weeks old


title: Mm_B6_Q111_F_wk7_hyb7021

description: gene expression mouse striatum

source_name: Q111 mouse striatum 7 weeks old


title: Mm_B6_WT_F_wk9_hyb6898

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_CD1_Q111_M_wk13_hyb6956

description: gene expression mouse striatum

source_name: Q111 mouse striatum 13 weeks old


title: Mm_B6_Q111_M_wk6_hyb6979

description: gene expression mouse striatum

source_name: Q111 mouse striatum 6 weeks old


title: Mm_B6_Q111_M_wk4_hyb6975

description: gene expression mouse striatum


title: Mm_FVB_WT_M_wk19_hyb7070

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk6_hyb8085

description: gene expression mouse striatum

source_name: WT mouse striatum 6 weeks old


title: Mm_129_Q111_F_wk16_hyb6949

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_B6_WT_F_wk19_hyb6788

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk17_hyb6888

description: gene expression mouse striatum

source_name: Q111 mouse striatum 17 weeks old


title: Mm_FVB_WT_M_wk8_hyb6821

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_CD1_Q111_M_wk4_hyb6830

description: gene expression mouse striatum


title: Mm_B6_Q92_M_wk20_hyb6770

description: gene expression mouse striatum


title: Mm_FVB_Q111_F_wk18_hyb6768

description: gene expression mouse striatum

source_name: Q111 mouse striatum 18 weeks old


title: Mm_B6_Q50_M_wk4_hyb6819

description: gene expression mouse striatum

source_name: Q50 mouse striatum 4 weeks old


title: Mm_FVB_Q111_M_wk6_hyb6895

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk17_hyb6755

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_B6_Q111_M_wk8_hyb6959

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_Q111_F_wk4_hyb6844

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk19_hyb6732

description: gene expression mouse striatum

source_name: Q111 mouse striatum 19 weeks old


title: Mm_B6_Q50_M_wk19_hyb6745

description: gene expression mouse striatum

source_name: Q50 mouse striatum 19 weeks old


title: Mm_B6_Q111_M_wk13_hyb6724

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk20_hyb6878

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_129_WT_M_wk7_hyb6723

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_FVB_WT_F_wk4_hyb6684

description: gene expression mouse striatum

source_name: WT mouse striatum 4 weeks old


title: Mm_B6_WT_F_wk15_hyb6659

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_CD1_WT_F_wk12_hyb6704

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_FVB_Q111_M_wk13_hyb6644

description: gene expression mouse striatum

source_name: Q111 mouse striatum 13 weeks old


title: Mm_CD1_WT_F_wk7_hyb6702

description: gene expression mouse striatum


title: Mm_B6_Q92_F_wk17_hyb6765

description: gene expression mouse striatum

source_name: Q92 mouse striatum 17 weeks old


title: Mm_129_Q111_F_wk10_hyb6646

description: gene expression mouse striatum

source_name: Q111 mouse striatum 10 weeks old


title: Mm_B6_WT_M_wk11_hyb6687

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_FVB_WT_M_wk10_hyb6642

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_B6_WT_F_wk10_hyb6708

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk15_hyb6631

description: gene expression mouse striatum

source_name: Q111 mouse striatum 15 weeks old


title: Mm_FVB_Q111_M_wk10_hyb6678

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk4_hyb6852

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_B6_Q111_M_wk17_hyb6622

description: gene expression mouse striatum

source_name: Q111 mouse striatum 17 weeks old


title: Mm_B6_WT_M_wk14_hyb6488

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_B6_WT_M_wk8_hyb6535

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_B6_Q50_F_wk10_hyb6580

description: gene expression mouse striatum

source_name: Q50 mouse striatum 10 weeks old


title: Mm_B6_Q50_F_wk20_hyb6556

description: gene expression mouse striatum

source_name: Q50 mouse striatum 20 weeks old


title: Mm_B6_Q50_M_wk18_hyb6786

description: gene expression mouse striatum

source_name: Q50 mouse striatum 18 weeks old


title: Mm_CD1_WT_M_wk14_hyb6448

description: gene expression mouse striatum


title: Mm_FVB_WT_M_wk16_hyb6539

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_B6_WT_M_wk7_hyb6335

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_CD1_WT_F_wk15_hyb6612

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_CD1_WT_F_wk20_hyb6493

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_B6_Q111_F_wk13_hyb6364

description: gene expression mouse striatum

source_name: Q111 mouse striatum 13 weeks old


title: Mm_B6_Q50_M_wk6_hyb6407

description: gene expression mouse striatum

source_name: Q50 mouse striatum 6 weeks old


title: Mm_B6_Q92_F_wk10_hyb6216

description: gene expression mouse striatum

source_name: Q92 mouse striatum 10 weeks old


title: Mm_B6_WT_M_wk14_hyb6620

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk16_hyb6254

description: gene expression mouse striatum


title: Mm_FVB_WT_F_wk17_hyb6246

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_B6_Q50_F_wk7_hyb6176

description: gene expression mouse striatum

source_name: Q50 mouse striatum 7 weeks old


title: Mm_CD1_WT_M_wk17_hyb6156

description: gene expression mouse striatum


title: Mm_B6_Q92_F_wk8_hyb6225

description: gene expression mouse striatum

source_name: Q92 mouse striatum 8 weeks old


title: Mm_B6_Q111_F_wk16_hyb6288

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_129_WT_F_wk10_hyb6479

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_B6_WT_F_wk10_hyb6359

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk19_hyb6603

description: gene expression mouse striatum

source_name: Q111 mouse striatum 19 weeks old


title: Mm_129_Q111_F_wk5_hyb6118

description: gene expression mouse striatum

source_name: Q111 mouse striatum 5 weeks old


title: Mm_FVB_WT_M_wk11_hyb6105

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_129_Q111_F_wk10_hyb6292

description: gene expression mouse striatum

source_name: Q111 mouse striatum 10 weeks old


title: Mm_B6_Q92_F_wk18_hyb6243

description: gene expression mouse striatum

source_name: Q92 mouse striatum 18 weeks old


title: Mm_FVB_Q111_F_wk5_hyb6317

description: gene expression mouse striatum


title: Mm_129_WT_F_wk11_hyb6310

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk7_hyb6012

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk18_hyb5889

description: gene expression mouse striatum

source_name: Q111 mouse striatum 18 weeks old


title: Mm_CD1_WT_F_wk4_hyb6057

description: gene expression mouse striatum

source_name: WT mouse striatum 4 weeks old


title: Mm_129_Q111_F_wk19_hyb5886

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk18_hyb5796

description: gene expression mouse striatum

source_name: WT mouse striatum 18 weeks old


title: Mm_129_WT_F_wk14_hyb5969

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_FVB_WT_F_wk17_hyb5868

description: gene expression mouse striatum


title: Mm_129_Q111_M_wk11_hyb5887

description: gene expression mouse striatum

source_name: Q111 mouse striatum 11 weeks old


title: Mm_B6_WT_F_wk12_hyb6000

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_129_Q111_F_wk19_hyb5760

description: gene expression mouse striatum


title: Mm_B6_Q92_M_wk7_hyb5795

description: gene expression mouse striatum

source_name: Q92 mouse striatum 7 weeks old


title: Mm_CD1_WT_M_wk20_hyb6091

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_129_WT_M_wk7_hyb6050

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_129_Q111_F_wk11_hyb6002

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk4_hyb5798

description: gene expression mouse striatum

source_name: Q50 mouse striatum 4 weeks old


title: Mm_B6_Q111_F_wk20_hyb5766

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_FVB_Q111_F_wk4_hyb6078

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_CD1_Q111_F_wk18_hyb6082

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk16_hyb5892

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_129_WT_F_wk8_hyb5877

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_B6_WT_M_wk8_hyb5922

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk16_hyb5681

description: gene expression mouse striatum

source_name: Q50 mouse striatum 16 weeks old


title: Mm_B6_WT_M_wk17_hyb5756

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_FVB_WT_M_wk10_hyb5617

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_B6_Q111_F_wk16_hyb5649

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk20_hyb5636

description: gene expression mouse striatum

source_name: Q50 mouse striatum 20 weeks old


title: Mm_FVB_WT_M_wk6_hyb5620

description: gene expression mouse striatum

source_name: WT mouse striatum 6 weeks old


title: Mm_B6_Q50_F_wk7_hyb5747

description: gene expression mouse striatum

source_name: Q50 mouse striatum 7 weeks old


title: Mm_B6_Q111_F_wk9_hyb5587

description: gene expression mouse striatum

source_name: Q111 mouse striatum 9 weeks old


title: Mm_FVB_Q111_F_wk16_hyb5490

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk8_hyb5464

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_Q92_F_wk15_hyb5633

description: gene expression mouse striatum

source_name: Q92 mouse striatum 15 weeks old


title: Mm_129_WT_M_wk18_hyb5514

description: gene expression mouse striatum

source_name: WT mouse striatum 18 weeks old


title: Mm_B6_WT_M_wk14_hyb5476

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_FVB_WT_F_wk18_hyb5585

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk20_hyb5691

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_FVB_Q111_M_wk11_hyb5277

description: gene expression mouse striatum

source_name: Q111 mouse striatum 11 weeks old


title: Mm_CD1_WT_F_wk11_hyb5441

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_CD1_WT_M_wk17_hyb5336

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk13_hyb5340

description: gene expression mouse striatum

source_name: Q111 mouse striatum 13 weeks old


title: Mm_B6_Q50_F_wk14_hyb5351

description: gene expression mouse striatum

source_name: Q50 mouse striatum 14 weeks old


title: Mm_B6_WT_F_wk15_hyb5268

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_FVB_WT_F_wk13_hyb5261

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_CD1_Q111_F_wk12_hyb5312

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_CD1_WT_M_wk8_hyb5324

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_B6_WT_F_wk11_hyb5337

description: gene expression mouse striatum


title: Mm_B6_Q111_F_wk12_hyb5245

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk12_hyb5368

description: gene expression mouse striatum

source_name: Q50 mouse striatum 12 weeks old


title: Mm_B6_WT_F_wk19_hyb5251

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_B6_WT_F_wk4_hyb5358

description: gene expression mouse striatum

source_name: WT mouse striatum 4 weeks old


title: Mm_129_WT_M_wk9_hyb5185

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_B6_Q111_M_wk15_hyb5224

description: gene expression mouse striatum

source_name: Q111 mouse striatum 15 weeks old


title: Mm_FVB_Q111_F_wk7_hyb5106

description: gene expression mouse striatum

source_name: Q111 mouse striatum 7 weeks old


title: Mm_129_Q111_M_wk10_hyb5077

description: gene expression mouse striatum

source_name: Q111 mouse striatum 10 weeks old


title: Mm_CD1_Q111_M_wk20_hyb5118

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_B6_Q92_M_wk11_hyb5068

description: gene expression mouse striatum

source_name: Q92 mouse striatum 11 weeks old


title: Mm_B6_Q111_F_wk10_hyb5138

description: gene expression mouse striatum


title: Mm_B6_Q92_M_wk18_hyb5065

description: gene expression mouse striatum

source_name: Q92 mouse striatum 18 weeks old


title: Mm_B6_Q92_F_wk16_hyb5111

description: gene expression mouse striatum

source_name: Q92 mouse striatum 16 weeks old


title: Mm_CD1_Q111_M_wk7_hyb5044

description: gene expression mouse striatum


title: Mm_129_Q111_M_wk7_hyb5050

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk16_hyb5000

description: gene expression mouse striatum

source_name: Q50 mouse striatum 16 weeks old


title: Mm_FVB_Q111_M_wk9_hyb5120

description: gene expression mouse striatum

source_name: Q111 mouse striatum 9 weeks old


title: Mm_B6_WT_M_wk4_hyb5181

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk13_hyb5012

description: gene expression mouse striatum

source_name: Q50 mouse striatum 13 weeks old


title: Mm_CD1_Q111_F_wk4_hyb4992

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_B6_Q50_M_wk16_hyb5153

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk16_hyb4966

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_CD1_WT_F_wk13_hyb4975

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_B6_WT_F_wk17_hyb4924

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_B6_WT_M_wk10_hyb4954

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_B6_WT_M_wk20_hyb4906

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_B6_Q111_M_wk8_hyb4919

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_FVB_Q111_F_wk7_hyb4899

description: gene expression mouse striatum


title: Mm_B6_Q92_F_wk17_hyb4831

description: gene expression mouse striatum

source_name: Q92 mouse striatum 17 weeks old


title: Mm_FVB_WT_F_wk7_hyb4976

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_CD1_WT_M_wk13_hyb4941

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk16_hyb4944

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk8_hyb4829

description: gene expression mouse striatum

source_name: Q50 mouse striatum 8 weeks old


title: Mm_FVB_Q111_F_wk13_hyb4971

description: gene expression mouse striatum

source_name: Q111 mouse striatum 13 weeks old


title: Mm_B6_WT_F_wk18_hyb4780

description: gene expression mouse striatum

source_name: WT mouse striatum 18 weeks old


title: Mm_CD1_Q111_M_wk12_hyb4961

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_CD1_WT_M_wk17_hyb4903

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk11_hyb4815

description: gene expression mouse striatum

source_name: Q111 mouse striatum 11 weeks old


title: Mm_B6_Q50_M_wk8_hyb4851

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk5_hyb4820

description: gene expression mouse striatum

source_name: Q111 mouse striatum 5 weeks old


title: Mm_129_Q111_F_wk6_hyb4753

description: gene expression mouse striatum

source_name: Q111 mouse striatum 6 weeks old


title: Mm_CD1_Q111_M_wk5_hyb4748

description: gene expression mouse striatum


title: Mm_129_WT_M_wk5_hyb4625

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_B6_Q50_F_wk6_hyb5512

description: gene expression mouse striatum

source_name: Q50 mouse striatum 6 weeks old


title: Mm_B6_Q111_F_wk16_hyb4729

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_B6_Q111_M_wk19_hyb4686

description: gene expression mouse striatum

source_name: Q111 mouse striatum 19 weeks old


title: Mm_FVB_WT_F_wk15_hyb4658

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_B6_Q50_M_wk19_hyb4584

description: gene expression mouse striatum

source_name: Q50 mouse striatum 19 weeks old


title: Mm_CD1_WT_M_wk18_hyb4711

description: gene expression mouse striatum


title: Mm_129_Q111_M_wk9_hyb4570

description: gene expression mouse striatum

source_name: Q111 mouse striatum 9 weeks old


title: Mm_B6_Q92_M_wk18_hyb4560

description: gene expression mouse striatum

source_name: Q92 mouse striatum 18 weeks old


title: Mm_B6_Q92_F_wk19_hyb4573

description: gene expression mouse striatum

source_name: Q92 mouse striatum 19 weeks old


title: Mm_B6_Q50_F_wk5_hyb4456

description: gene expression mouse striatum

source_name: Q50 mouse striatum 5 weeks old


title: Mm_B6_Q111_F_wk4_hyb4457

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_FVB_Q111_M_wk14_hyb4664

description: gene expression mouse striatum

source_name: Q111 mouse striatum 14 weeks old


title: Mm_CD1_WT_M_wk15_hyb4511

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk9_hyb4443

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk20_hyb4539

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_CD1_WT_F_wk12_hyb4551

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_B6_Q50_F_wk16_hyb4565

description: gene expression mouse striatum

source_name: Q50 mouse striatum 16 weeks old


title: Mm_B6_Q50_F_wk4_hyb4518

description: gene expression mouse striatum

source_name: Q50 mouse striatum 4 weeks old


title: Mm_FVB_Q111_M_wk4_hyb4701

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk6_hyb4463

description: gene expression mouse striatum

source_name: Q111 mouse striatum 6 weeks old


title: Mm_CD1_WT_M_wk17_hyb4654

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_129_WT_F_wk19_hyb4617

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_CD1_Q111_F_wk20_hyb5169

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_B6_WT_M_wk11_hyb4424

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_B6_WT_M_wk16_hyb4370

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_FVB_WT_F_wk9_hyb4383

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_B6_Q111_F_wk19_hyb4447

description: gene expression mouse striatum

source_name: Q111 mouse striatum 19 weeks old


title: Mm_CD1_Q111_M_wk5_hyb4438

description: gene expression mouse striatum

source_name: Q111 mouse striatum 5 weeks old


title: Mm_129_Q111_F_wk15_hyb4371

description: gene expression mouse striatum

source_name: Q111 mouse striatum 15 weeks old


title: Mm_CD1_WT_M_wk5_hyb4369

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_B6_Q50_M_wk16_hyb4363

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk12_hyb4345

description: gene expression mouse striatum

source_name: Q50 mouse striatum 12 weeks old


title: Mm_129_WT_M_wk18_hyb4304

description: gene expression mouse striatum

source_name: WT mouse striatum 18 weeks old


title: Mm_CD1_Q111_M_wk12_hyb4352

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_FVB_WT_M_wk4_hyb4320

description: gene expression mouse striatum

source_name: WT mouse striatum 4 weeks old


title: Mm_129_Q111_F_wk8_hyb4333

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_WT_F_wk7_hyb4315

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_FVB_Q111_M_wk8_hyb4222

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk13_hyb4282

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_CD1_WT_M_wk11_hyb4193

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk13_hyb4261

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk5_hyb4213

description: gene expression mouse striatum


title: Mm_129_Q111_F_wk20_hyb4156

description: gene expression mouse striatum


title: Mm_FVB_WT_M_wk18_hyb4192

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk12_hyb4136

description: gene expression mouse striatum


title: Mm_FVB_WT_F_wk20_hyb4039

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_B6_WT_M_wk15_hyb4135

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_CD1_WT_M_wk18_hyb4116

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk20_hyb4127

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_B6_WT_M_wk9_hyb4172

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk8_hyb4063

description: gene expression mouse striatum


title: Mm_129_Q111_F_wk4_hyb4008

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_129_Q111_F_wk4_hyb3991

description: gene expression mouse striatum


title: Mm_129_WT_F_wk8_hyb4386

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_B6_WT_M_wk4_hyb3981

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk7_hyb3951

description: gene expression mouse striatum

source_name: Q111 mouse striatum 7 weeks old


title: Mm_FVB_WT_F_wk16_hyb4031

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_CD1_WT_M_wk9_hyb3972

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_B6_WT_M_wk7_hyb4013

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk14_hyb3973

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_FVB_WT_M_wk14_hyb3898

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk8_hyb4006

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk12_hyb3812

description: gene expression mouse striatum


title: Mm_FVB_WT_M_wk19_hyb3859

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_129_Q111_M_wk12_hyb3883

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk16_hyb3894

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_B6_WT_M_wk12_hyb3696

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_B6_Q92_F_wk14_hyb3698

description: gene expression mouse striatum

source_name: Q92 mouse striatum 14 weeks old


title: Mm_B6_Q92_M_wk13_hyb3718

description: gene expression mouse striatum

source_name: Q92 mouse striatum 13 weeks old


title: Mm_B6_WT_M_wk10_hyb3705

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_B6_WT_M_wk9_hyb3677

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk8_hyb3683

description: gene expression mouse striatum

source_name: Q50 mouse striatum 8 weeks old


title: Mm_B6_WT_F_wk20_hyb3975

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk13_hyb3663

description: gene expression mouse striatum

source_name: Q50 mouse striatum 13 weeks old


title: Mm_B6_Q50_F_wk12_hyb3676

description: gene expression mouse striatum

source_name: Q50 mouse striatum 12 weeks old


title: Mm_B6_Q111_F_wk12_hyb3656

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_B6_WT_F_wk10_hyb3919

description: gene expression mouse striatum


title: Mm_B6_Q92_F_wk14_hyb3805

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk18_hyb3749

description: gene expression mouse striatum

source_name: WT mouse striatum 18 weeks old


title: Mm_B6_Q111_M_wk20_hyb3827

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_B6_Q92_F_wk11_hyb3601

description: gene expression mouse striatum

source_name: Q92 mouse striatum 11 weeks old


title: Mm_B6_WT_F_wk11_hyb3629

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_B6_Q50_F_wk4_hyb3600

description: gene expression mouse striatum

source_name: Q50 mouse striatum 4 weeks old


title: Mm_B6_Q92_F_wk8_hyb3599

description: gene expression mouse striatum

source_name: Q92 mouse striatum 8 weeks old


title: Mm_B6_Q50_M_wk17_hyb3561

description: gene expression mouse striatum

source_name: Q50 mouse striatum 17 weeks old


title: Mm_B6_Q111_M_wk18_hyb3475

description: gene expression mouse striatum

source_name: Q111 mouse striatum 18 weeks old


title: Mm_B6_WT_F_wk10_hyb3546

description: gene expression mouse striatum


title: Mm_B6_Q92_M_wk9_hyb3477

description: gene expression mouse striatum

source_name: Q92 mouse striatum 9 weeks old


title: Mm_B6_Q50_M_wk9_hyb3593

description: gene expression mouse striatum

source_name: Q50 mouse striatum 9 weeks old


title: Mm_CD1_WT_M_wk11_hyb3492

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk8_hyb3523

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk12_hyb3470

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk9_hyb3458

description: gene expression mouse striatum

source_name: Q111 mouse striatum 9 weeks old


title: Mm_B6_WT_M_wk16_hyb3445

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_129_WT_M_wk17_hyb3400

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_CD1_WT_M_wk8_hyb3359

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_B6_Q50_M_wk4_hyb3344

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk16_hyb3435

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_B6_WT_F_wk12_hyb3338

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_B6_Q50_F_wk15_hyb3412

description: gene expression mouse striatum

source_name: Q50 mouse striatum 15 weeks old


title: Mm_FVB_WT_M_wk15_hyb3316

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_B6_Q111_F_wk14_hyb3301

description: gene expression mouse striatum

source_name: Q111 mouse striatum 14 weeks old


title: Mm_FVB_Q111_M_wk18_hyb4019

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk11_hyb3351

description: gene expression mouse striatum

source_name: Q111 mouse striatum 11 weeks old


title: Mm_129_Q111_F_wk12_hyb3288

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_CD1_WT_M_wk5_hyb3290

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_B6_WT_M_wk17_hyb3178

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk8_hyb3260

description: gene expression mouse striatum


title: Mm_CD1_WT_M_wk14_hyb3343

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_CD1_Q111_F_wk8_hyb3215

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_Q50_M_wk8_hyb3222

description: gene expression mouse striatum

source_name: Q50 mouse striatum 8 weeks old


title: Mm_B6_Q92_M_wk6_hyb3248

description: gene expression mouse striatum

source_name: Q92 mouse striatum 6 weeks old


title: Mm_B6_Q111_M_wk8_hyb3237

description: gene expression mouse striatum


title: Mm_B6_Q111_F_wk16_hyb3144

description: gene expression mouse striatum


title: Mm_B6_Q92_F_wk15_hyb3264

description: gene expression mouse striatum

source_name: Q92 mouse striatum 15 weeks old


title: Mm_FVB_WT_F_wk4_hyb3172

description: gene expression mouse striatum

source_name: WT mouse striatum 4 weeks old


title: Mm_CD1_Q111_F_wk19_hyb3322

description: gene expression mouse striatum

source_name: Q111 mouse striatum 19 weeks old


title: Mm_FVB_Q111_F_wk20_hyb3157

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_FVB_WT_M_wk9_hyb3306

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_129_WT_F_wk10_hyb3195

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_CD1_WT_M_wk19_hyb3139

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_CD1_Q111_M_wk5_hyb3135

description: gene expression mouse striatum

source_name: Q111 mouse striatum 5 weeks old


title: Mm_B6_WT_F_wk8_hyb3132

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_129_Q111_F_wk19_hyb3268

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk20_hyb3060

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk20_hyb3125

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_B6_Q92_F_wk12_hyb3028

description: gene expression mouse striatum

source_name: Q92 mouse striatum 12 weeks old


title: Mm_129_WT_F_wk12_hyb3026

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_B6_WT_F_wk5_hyb3013

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_CD1_Q111_M_wk14_hyb3023

description: gene expression mouse striatum

source_name: Q111 mouse striatum 14 weeks old


title: Mm_129_WT_F_wk13_hyb2998

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_B6_Q92_M_wk8_hyb3012

description: gene expression mouse striatum

source_name: Q92 mouse striatum 8 weeks old


title: Mm_CD1_WT_M_wk20_hyb2936

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk15_hyb2968

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_B6_Q111_M_wk12_hyb2953

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_129_Q111_F_wk8_hyb2812

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_129_Q111_M_wk17_hyb2924

description: gene expression mouse striatum

source_name: Q111 mouse striatum 17 weeks old


title: Mm_CD1_WT_F_wk20_hyb3499

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk19_hyb2874

description: gene expression mouse striatum


title: Mm_CD1_WT_M_wk11_hyb2766

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_B6_WT_M_wk15_hyb2722

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk12_hyb2709

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk13_hyb2952

description: gene expression mouse striatum


title: Mm_B6_Q92_F_wk16_hyb2696

description: gene expression mouse striatum

source_name: Q92 mouse striatum 16 weeks old


title: Mm_B6_Q111_M_wk20_hyb2682

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_129_WT_M_wk9_hyb2776

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_FVB_WT_M_wk11_hyb2761

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk4_hyb2689

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_B6_WT_F_wk16_hyb2942

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_FVB_WT_F_wk19_hyb2680

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_CD1_WT_F_wk18_hyb2861

description: gene expression mouse striatum

source_name: WT mouse striatum 18 weeks old


title: Mm_129_Q111_M_wk18_hyb2835

description: gene expression mouse striatum

source_name: Q111 mouse striatum 18 weeks old


title: Mm_B6_Q111_M_wk16_hyb2657

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_FVB_WT_M_wk16_hyb2672

description: gene expression mouse striatum


title: Mm_B6_Q111_F_wk6_hyb2647

description: gene expression mouse striatum

source_name: Q111 mouse striatum 6 weeks old


title: Mm_FVB_Q111_F_wk4_hyb2615

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk6_hyb2613

description: gene expression mouse striatum

source_name: WT mouse striatum 6 weeks old


title: Mm_B6_WT_F_wk20_hyb2637

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_B6_WT_F_wk12_hyb2553

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_B6_Q50_M_wk5_hyb2552

description: gene expression mouse striatum

source_name: Q50 mouse striatum 5 weeks old


title: Mm_B6_Q50_M_wk4_hyb2576

description: gene expression mouse striatum

source_name: Q50 mouse striatum 4 weeks old


title: Mm_B6_Q111_F_wk13_hyb2595

description: gene expression mouse striatum

source_name: Q111 mouse striatum 13 weeks old


title: Mm_B6_Q50_F_wk8_hyb2559

description: gene expression mouse striatum

source_name: Q50 mouse striatum 8 weeks old


title: Mm_CD1_Q111_F_wk6_hyb2407

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk11_hyb2466

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_B6_WT_M_wk13_hyb2391

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_B6_WT_M_wk18_hyb2532

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk4_hyb2520

description: gene expression mouse striatum

source_name: WT mouse striatum 4 weeks old


title: Mm_CD1_Q111_M_wk4_hyb2512

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_FVB_Q111_M_wk16_hyb2324

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk10_hyb2469

description: gene expression mouse striatum

source_name: Q50 mouse striatum 10 weeks old


title: Mm_B6_WT_F_wk7_hyb2432

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_129_WT_F_wk19_hyb2270

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_FVB_WT_M_wk13_hyb2271

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk9_hyb2550

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_FVB_WT_M_wk9_hyb2509

description: gene expression mouse striatum


title: Mm_129_Q111_F_wk13_hyb2236

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk4_hyb2344

description: gene expression mouse striatum


title: Mm_129_WT_F_wk15_hyb2326

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_CD1_Q111_M_wk8_hyb2507

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_Q111_M_wk11_hyb2247

description: gene expression mouse striatum

source_name: Q111 mouse striatum 11 weeks old


title: Mm_129_Q111_M_wk7_hyb2212

description: gene expression mouse striatum

source_name: Q111 mouse striatum 7 weeks old


title: Mm_CD1_Q111_F_wk13_hyb2948

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk6_hyb2220

description: gene expression mouse striatum

source_name: Q111 mouse striatum 6 weeks old


title: Mm_CD1_Q111_F_wk16_hyb2195

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_CD1_Q111_F_wk6_hyb2229

description: gene expression mouse striatum


title: Mm_B6_Q111_F_wk8_hyb2173

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk11_hyb2191

description: gene expression mouse striatum


title: Mm_B6_Q92_M_wk4_hyb2230

description: gene expression mouse striatum

source_name: Q92 mouse striatum 4 weeks old


title: Mm_129_WT_F_wk7_hyb2171

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk10_hyb2088

description: gene expression mouse striatum

source_name: Q111 mouse striatum 10 weeks old


title: Mm_CD1_Q111_F_wk10_hyb2121

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk4_hyb2141

description: gene expression mouse striatum

source_name: Q50 mouse striatum 4 weeks old


title: Mm_129_Q111_M_wk4_hyb2137

description: gene expression mouse striatum


title: Mm_CD1_WT_M_wk7_hyb2132

description: gene expression mouse striatum


title: Mm_B6_Q111_M_wk15_hyb2077

description: gene expression mouse striatum

source_name: Q111 mouse striatum 15 weeks old


title: Mm_FVB_WT_M_wk10_hyb1928

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_CD1_WT_F_wk19_hyb2138

description: gene expression mouse striatum


title: Mm_129_WT_F_wk11_hyb2019

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_B6_WT_F_wk15_hyb2108

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk12_hyb2140

description: gene expression mouse striatum

source_name: Q50 mouse striatum 12 weeks old


title: Mm_B6_Q92_F_wk5_hyb1972

description: gene expression mouse striatum

source_name: Q92 mouse striatum 5 weeks old


title: Mm_B6_Q50_F_wk6_hyb1966

description: gene expression mouse striatum

source_name: Q50 mouse striatum 6 weeks old


title: Mm_B6_Q111_M_wk20_hyb1915

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_CD1_WT_F_wk6_hyb2071

description: gene expression mouse striatum

source_name: WT mouse striatum 6 weeks old


title: Mm_CD1_WT_M_wk16_hyb2136

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_B6_Q111_M_wk7_hyb1935

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk18_hyb2162

description: gene expression mouse striatum

source_name: WT mouse striatum 18 weeks old


title: Mm_CD1_WT_F_wk15_hyb1986

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_B6_WT_M_wk18_hyb1963

description: gene expression mouse striatum


title: Mm_FVB_WT_M_wk7_hyb2124

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_129_WT_F_wk20_hyb2127

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_B6_WT_F_wk4_hyb1875

description: gene expression mouse striatum

source_name: WT mouse striatum 4 weeks old


title: Mm_B6_WT_M_wk4_hyb1905

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk9_hyb1910

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_CD1_Q111_M_wk20_hyb1859

description: gene expression mouse striatum


title: Mm_CD1_WT_M_wk7_hyb2099

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk16_hyb2134

description: gene expression mouse striatum

source_name: Q50 mouse striatum 16 weeks old


title: Mm_129_WT_F_wk19_hyb1871

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_CD1_Q111_M_wk6_hyb1838

description: gene expression mouse striatum

source_name: Q111 mouse striatum 6 weeks old


title: Mm_CD1_Q111_F_wk8_hyb1799

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_Q50_M_wk5_hyb1802

description: gene expression mouse striatum

source_name: Q50 mouse striatum 5 weeks old


title: Mm_B6_WT_F_wk12_hyb1825

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_FVB_WT_M_wk5_hyb1800

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_FVB_WT_M_wk15_hyb1774

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk17_hyb1768

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_CD1_Q111_M_wk17_hyb1773

description: gene expression mouse striatum

source_name: Q111 mouse striatum 17 weeks old


title: Mm_FVB_Q111_F_wk20_hyb1965

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_CD1_Q111_F_wk16_hyb1575

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_CD1_Q111_F_wk15_hyb1715

description: gene expression mouse striatum

source_name: Q111 mouse striatum 15 weeks old


title: Mm_B6_Q50_M_wk8_hyb1524

description: gene expression mouse striatum

source_name: Q50 mouse striatum 8 weeks old


title: Mm_129_Q111_F_wk5_hyb1598

description: gene expression mouse striatum

source_name: Q111 mouse striatum 5 weeks old


title: Mm_B6_Q50_M_wk20_hyb1666

description: gene expression mouse striatum

source_name: Q50 mouse striatum 20 weeks old


title: Mm_129_WT_M_wk14_hyb1622

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_CD1_WT_F_wk19_hyb1538

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk13_hyb1613

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_FVB_Q111_M_wk10_hyb1618

description: gene expression mouse striatum

source_name: Q111 mouse striatum 10 weeks old


title: Mm_FVB_WT_F_wk6_hyb1686

description: gene expression mouse striatum

source_name: WT mouse striatum 6 weeks old


title: Mm_B6_Q50_M_wk20_hyb1521

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk17_hyb1610

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk7_hyb1501

description: gene expression mouse striatum

source_name: Q50 mouse striatum 7 weeks old


title: Mm_CD1_WT_F_wk9_hyb1417

description: gene expression mouse striatum

source_name: WT mouse striatum 9 weeks old


title: Mm_B6_Q111_F_wk8_hyb1515

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_Q111_F_wk8_hyb1474

description: gene expression mouse striatum


title: Mm_129_Q111_F_wk20_hyb1379

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk10_hyb1434

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_129_Q111_F_wk6_hyb1343

description: gene expression mouse striatum

source_name: Q111 mouse striatum 6 weeks old


title: Mm_B6_Q50_M_wk20_hyb1402

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk5_hyb1472

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_129_Q111_F_wk14_hyb1314

description: gene expression mouse striatum

source_name: Q111 mouse striatum 14 weeks old


title: Mm_B6_WT_M_wk11_hyb1315

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_129_WT_M_wk12_hyb1351

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_129_Q111_F_wk18_hyb1733

description: gene expression mouse striatum

source_name: Q111 mouse striatum 18 weeks old


title: Mm_129_Q111_F_wk9_hyb1296

description: gene expression mouse striatum

source_name: Q111 mouse striatum 9 weeks old


title: Mm_B6_Q92_F_wk17_hyb1238

description: gene expression mouse striatum

source_name: Q92 mouse striatum 17 weeks old


title: Mm_B6_WT_M_wk7_hyb1237

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_B6_WT_F_wk14_hyb1235

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_B6_WT_F_wk20_hyb1242

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_FVB_WT_F_wk5_hyb1205

description: gene expression mouse striatum


title: Mm_129_WT_F_wk4_hyb1209

description: gene expression mouse striatum

source_name: WT mouse striatum 4 weeks old


title: Mm_CD1_Q111_M_wk12_hyb1437

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_FVB_Q111_M_wk5_hyb1187

description: gene expression mouse striatum

source_name: Q111 mouse striatum 5 weeks old


title: Mm_FVB_WT_F_wk18_hyb1226

description: gene expression mouse striatum

source_name: WT mouse striatum 18 weeks old


title: Mm_FVB_WT_M_wk12_hyb1278

description: gene expression mouse striatum


title: Mm_FVB_Q111_M_wk7_hyb1181

description: gene expression mouse striatum

source_name: Q111 mouse striatum 7 weeks old


title: Mm_B6_Q92_F_wk12_hyb1163

description: gene expression mouse striatum

source_name: Q92 mouse striatum 12 weeks old


title: Mm_B6_WT_F_wk17_hyb1171

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_B6_Q111_F_wk4_hyb1128

description: gene expression mouse striatum

source_name: Q111 mouse striatum 4 weeks old


title: Mm_B6_Q92_F_wk13_hyb1202

description: gene expression mouse striatum

source_name: Q92 mouse striatum 13 weeks old


title: Mm_B6_Q111_F_wk10_hyb1101

description: gene expression mouse striatum

source_name: Q111 mouse striatum 10 weeks old


title: Mm_B6_Q50_F_wk4_hyb1019

description: gene expression mouse striatum

source_name: Q50 mouse striatum 4 weeks old


title: Mm_CD1_WT_M_wk18_hyb1108

description: gene expression mouse striatum


title: Mm_CD1_Q111_F_wk4_hyb1091

description: gene expression mouse striatum


title: Mm_B6_Q92_M_wk16_hyb1065

description: gene expression mouse striatum

source_name: Q92 mouse striatum 16 weeks old


title: Mm_129_WT_F_wk6_hyb1229

description: gene expression mouse striatum

source_name: WT mouse striatum 6 weeks old


title: Mm_CD1_WT_M_wk16_hyb1062

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_FVB_Q111_M_wk9_hyb1089

description: gene expression mouse striatum

source_name: Q111 mouse striatum 9 weeks old


title: Mm_CD1_Q111_M_wk4_hyb0978

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk8_hyb1012

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_B6_Q92_M_wk4_hyb1061

description: gene expression mouse striatum

source_name: Q92 mouse striatum 4 weeks old


title: Mm_CD1_WT_M_wk12_hyb0997

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_CD1_WT_F_wk13_hyb1137

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_CD1_WT_F_wk13_hyb0975

description: gene expression mouse striatum


title: Mm_B6_Q92_M_wk9_hyb0976

description: gene expression mouse striatum

source_name: Q92 mouse striatum 9 weeks old


title: Mm_B6_Q50_F_wk16_hyb0898

description: gene expression mouse striatum

source_name: Q50 mouse striatum 16 weeks old


title: Mm_129_WT_M_wk10_hyb1015

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_B6_Q111_F_wk4_hyb0803

description: gene expression mouse striatum


title: Mm_FVB_WT_F_wk20_hyb0960

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_129_Q111_F_wk16_hyb0760

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_CD1_Q111_M_wk12_hyb0827

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_B6_Q92_M_wk5_hyb1755

description: gene expression mouse striatum

source_name: Q92 mouse striatum 5 weeks old


title: Mm_B6_WT_M_wk19_hyb0732

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_B6_Q50_F_wk15_hyb0793

description: gene expression mouse striatum

source_name: Q50 mouse striatum 15 weeks old


title: Mm_B6_Q92_M_wk7_hyb0621

description: gene expression mouse striatum

source_name: Q92 mouse striatum 7 weeks old


title: Mm_B6_WT_M_wk16_hyb0616

description: gene expression mouse striatum


title: Mm_FVB_WT_F_wk7_hyb0759

description: gene expression mouse striatum

source_name: WT mouse striatum 7 weeks old


title: Mm_B6_WT_M_wk10_hyb0632

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk14_hyb0637

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_B6_Q111_F_wk5_hyb0582

description: gene expression mouse striatum

source_name: Q111 mouse striatum 5 weeks old


title: Mm_FVB_Q111_F_wk6_hyb0746

description: gene expression mouse striatum

source_name: Q111 mouse striatum 6 weeks old


title: Mm_CD1_Q111_F_wk16_hyb0581

description: gene expression mouse striatum


title: Mm_B6_Q50_F_wk12_hyb0589

description: gene expression mouse striatum

source_name: Q50 mouse striatum 12 weeks old


title: Mm_B6_Q50_F_wk20_hyb0698

description: gene expression mouse striatum

source_name: Q50 mouse striatum 20 weeks old


title: Mm_CD1_Q111_M_wk12_hyb0730

description: gene expression mouse striatum


title: Mm_B6_Q111_F_wk20_hyb0596

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_FVB_WT_F_wk17_hyb0529

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_B6_Q111_M_wk18_hyb0591

description: gene expression mouse striatum

source_name: Q111 mouse striatum 18 weeks old


title: Mm_FVB_Q111_M_wk15_hyb0485

description: gene expression mouse striatum

source_name: Q111 mouse striatum 15 weeks old


title: Mm_B6_Q50_M_wk9_hyb0564

description: gene expression mouse striatum

source_name: Q50 mouse striatum 9 weeks old


title: Mm_B6_Q111_F_wk12_hyb0499

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk18_hyb0588

description: gene expression mouse striatum

source_name: Q50 mouse striatum 18 weeks old


title: Mm_CD1_Q111_F_wk20_hyb0667

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk5_hyb0542

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_129_WT_M_wk13_hyb0477

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_129_WT_F_wk17_hyb0467

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk20_hyb0597

description: gene expression mouse striatum

source_name: WT mouse striatum 20 weeks old


title: Mm_B6_WT_F_wk12_hyb0423

description: gene expression mouse striatum

source_name: WT mouse striatum 12 weeks old


title: Mm_B6_WT_F_wk11_hyb0427

description: gene expression mouse striatum

source_name: WT mouse striatum 11 weeks old


title: Mm_CD1_WT_M_wk11_hyb0457

description: gene expression mouse striatum


title: Mm_B6_WT_F_wk8_hyb0419

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_B6_WT_F_wk15_hyb0406

description: gene expression mouse striatum

source_name: WT mouse striatum 15 weeks old


title: Mm_B6_Q50_M_wk11_hyb0362

description: gene expression mouse striatum

source_name: Q50 mouse striatum 11 weeks old


title: Mm_B6_Q50_M_wk12_hyb0389

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk11_hyb0378

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk8_hyb0357

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_Q92_F_wk15_hyb0353

description: gene expression mouse striatum

source_name: Q92 mouse striatum 15 weeks old


title: Mm_CD1_Q111_M_wk9_hyb0349

description: gene expression mouse striatum

source_name: Q111 mouse striatum 9 weeks old


title: Mm_B6_Q111_F_wk12_hyb0268

description: gene expression mouse striatum

source_name: Q111 mouse striatum 12 weeks old


title: Mm_FVB_Q111_M_wk15_hyb0335

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk15_hyb1658

description: gene expression mouse striatum


title: Mm_CD1_WT_F_wk14_hyb0314

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Mm_B6_WT_M_wk17_hyb0198

description: gene expression mouse striatum

source_name: WT mouse striatum 17 weeks old


title: Mm_CD1_WT_F_wk16_hyb0179

description: gene expression mouse striatum

source_name: WT mouse striatum 16 weeks old


title: Mm_B6_Q111_F_wk20_hyb0292

description: gene expression mouse striatum

source_name: Q111 mouse striatum 20 weeks old


title: Mm_B6_WT_M_wk8_hyb0182

description: gene expression mouse striatum


title: Mm_FVB_Q111_F_wk17_hyb0347

description: gene expression mouse striatum

source_name: Q111 mouse striatum 17 weeks old


title: Mm_B6_WT_F_wk15_hyb0329

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk16_hyb0318

description: gene expression mouse striatum

source_name: Q111 mouse striatum 16 weeks old


title: Mm_B6_Q92_M_wk7_hyb0251

description: gene expression mouse striatum

source_name: Q92 mouse striatum 7 weeks old


title: Mm_B6_Q92_M_wk20_hyb0380

description: gene expression mouse striatum

source_name: Q92 mouse striatum 20 weeks old


title: Mm_CD1_Q111_M_wk16_hyb0133

description: gene expression mouse striatum


title: Mm_CD1_Q111_M_wk20_hyb0150

description: gene expression mouse striatum


title: Mm_B6_WT_M_wk5_hyb0116

description: gene expression mouse striatum

source_name: WT mouse striatum 5 weeks old


title: Mm_FVB_Q111_M_wk12_hyb1074

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk9_hyb0131

description: gene expression mouse striatum

source_name: Q50 mouse striatum 9 weeks old


title: Mm_B6_Q111_M_wk14_hyb0111

description: gene expression mouse striatum

source_name: Q111 mouse striatum 14 weeks old


title: Mm_B6_WT_M_wk14_hyb0092

description: gene expression mouse striatum


title: Mm_B6_Q50_M_wk20_hyb0068

description: gene expression mouse striatum

source_name: Q50 mouse striatum 20 weeks old


title: Mm_B6_WT_F_wk10_hyb0052

description: gene expression mouse striatum

source_name: WT mouse striatum 10 weeks old


title: Mm_129_WT_F_wk8_hyb0303

description: gene expression mouse striatum

source_name: WT mouse striatum 8 weeks old


title: Mm_CD1_WT_F_wk19_hyb0197

description: gene expression mouse striatum

source_name: WT mouse striatum 19 weeks old


title: Mm_B6_WT_F_wk13_hyb0007

description: gene expression mouse striatum

source_name: WT mouse striatum 13 weeks old


title: Mm_B6_Q92_M_wk13_hyb0091

description: gene expression mouse striatum

source_name: Q92 mouse striatum 13 weeks old


title: Mm_FVB_Q111_M_wk8_hyb0108

description: gene expression mouse striatum

source_name: Q111 mouse striatum 8 weeks old


title: Mm_B6_Q50_F_wk12_hyb0310

description: gene expression mouse striatum

source_name: Q50 mouse striatum 12 weeks old


title: Mm_B6_WT_M_wk14_hyb0026

description: gene expression mouse striatum

source_name: WT mouse striatum 14 weeks old


title: Untreated-RG9-3

city: Lebanon

first: Tammara

last: Wood

state: NH

address: WTRB 674

department: Biomedical Data Science

institute: Dartmouth Medical School

description: Control

hyb_protocol: Fragmentation Buffer and Hybridization Buffer (Agilent Gene Expression Hybridization Kit) were added, and samples applied to Agilent SurePrint G3 Mouse GE 8x60K microarrays

scan_protocol: Scanned on Agilent scanner

data_processing: Images were quantified using Feature Extraction Software

source_name: Universal Mouse Reference

label_protocol: 25ng of total RNA was reversed transcribed using Agilent Low Input Quick-Amp Labeling Kit and labeled with Perkin Elmer Cy5

extract_protocol: Total RNA extracted using RNeasy Fibrous Tissue Mini following manufacturers protocol

treatment_protocol: melanoma tumor biopsies

tag: sample type

value: reference

source_name: Sample: MouseTissue Biopsy_Control

value: melanoma


title: Resistant-RG5-3

description: 120 day treated

source_name: Sample: MouseTissue Biopsy_120 day treated


title: Untreated-RG10-3

description: Control


title: Spleen_25islets_KC100

city: Fukuoka

first: Hitomi

last: Nishinakamura

address: 7-45-1 Nanakuma, Jonan-ku

department: Department of Regenerative Medicine and Transplantation

country: Japan

institute: Faculty of Medicine, Fukuoka University

description: Sample 3

hyb_protocol: cRNA was hybridized to a 60K 60-mer oligomicroarray (Agilent-028005 SurePrint G3 Mouse Gene Expression Microarray 8x60K; Agilent Technologies) according to the manufacturer's instructions.

scan_protocol: The hybridized microarray slides were scanned using an Agilent scanner. The relative hybridization intensities and background hybridization values were calculated using Feature Extraction Software version 9.5.1.1 (Agilent Technologies).

data_processing: The scanned images were analyzed with Feature Extraction Software 9.5.1.1 (Agilent) using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities. The raw signal intensities and flags for each probe were calculated from the hybridization intensities and spot information according to the procedures recommended by Agilent Technologies using the Flag criteria in the GeneSpring Software. In addition, the raw signal intensities of all samples were normalized by the quantile algorithm with the Bioconductor.

source_name: Spleen, 25 islets, KC100

label_protocol: cRNA was amplified and labelled using a Low input Quick Amp Labelling Kit (Agilent Technologies).

extract_protocol: Total RNA was isolated from tissues using TRIzol Reagent (Invitrogen) and purified using SV Total RNA Isolation System (Promega).

treatment_protocol: Twenty-five islets and 100 islets were transplanted into spleen and beneath the kidney capsule of recipient mice, respectively (SP25+KC100). Then, spleen was harvested just after transplantation (Sample 1) or 2 days after transplantation (Sample 2). Furthermore, 100 days after receiving SP25+KC100, nephrectomy was performed for removing islet graft in the kidney, and those nephrectomized mice received splenectomy on 139 days after transplantation for harvesting the spleen sample of the recipient mice (Sample 3).

tag: strain/background

value: spleen

tag: treatment

value: 25 islets transplanted into spleen + 100 islets transplanted beneath the kidney capsule

tag: treatment 2

value: nephrectomy to remove islet graft in kidney 100 days after transplant

tag: time after transplantation

value: 139 days


title: Spleen_25islets_Day2

description: Sample 2

source_name: Spleen, 25 islets, day2

value: 25 islets transplanted into spleen

value: 2 days


title: Untreated-RG10-2

description: Control


title: Resistant-RG5-5

description: 120 day treated


title: Untreated-RG10-5

description: Control


title: 60day-RG7-2

description: 60 day treated

source_name: Sample: MouseTissue Biopsy_60 day treated


title: 60day-RG6-1

description: 60 day treated


title: 60day-RG7-1

description: 60 day treated


title: 60day-RG6-4

description: 60 day treated


title: Resistant-RG4-3

description: 120 day treated


title: 4day-STS1

description: 4 day treated

source_name: Sample: MouseTissue Biopsy_4 day treated


title: Resistant-RG4-4

description: 120 day treated


title: Spleen_25islets_Day0

description: Sample 1

source_name: Spleen, 25 islets, day0

value: 0 days


title: 4day-STS2

description: 4 day treated


title: 4day-STS4

description: 4 day treated


title: 4day-STS3

description: 4 day treated


title: wildtype 2

city: Sapporo

first: Kensuke

last: Ninomiya

address: Kita-15, Nishi-7, Kita-Ku

institute: Hokkaido University

description:
Gene expression data from wildtype mouse brain
cerebrum

hyb_protocol: Following fragmentation, 12 ug of aRNA were hybridized for 16 hr at 45C on Affymetrix.GeneChip.Mouse430_2. GeneChips were washed and stained using GeneChip Hybridization Wash and Stain Kit in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using Affymetrix GeneChip Scanner 3000G

data_processing: The data were analyzed with RMA using RMA Express software.

label: biotin

source_name: 8–9-week-old male wildtype mouse

label_protocol: Biotinylated aRNA were prepared from 100 ng total RNA using GeneChip® 3' IVT Express Kit (Affymetrix) from 100 ng total RNA according to the manufacturer's instruction

growth_protocol: BCAS1 KO ( -/-) and WT (+/+) mice were obtained by breeding BCAS1 (+/-) C57BL/6 mice.

extract_protocol: Total RNA was extracted from a brain of 8–9-week-old male mouse using Sepazol-RNA I Super (Nacalai Tesque) and then treated with RQ1 RNase-free DNase (Promega).

treatment_protocol: Brains were dissected from 8–9-week-old male mice.

tag: background strain

value: brain

tag: genotype

value: wildtype

tag: gender

value: male

tag: age

value: 8-9 weeks


title: H11

city: San Francisco

first: Kyle

middle: D

last: Halliwill

state: CA

address: 1450 Third Street

department: Helen Diller Family Comprehensive Cancer Center

institute: UCSF

description:
MT-324
Expression data from a squamous cell skin carcinoma derived cell line with spindle morphology

hyb_protocol: 200 microliters of hybridization sample were incubated in the Affymetrix Hybridization Oven 640 instrument for 16 hours at 45C with 60 rpm rotation. Arrays were processed with the Affymetrix Fluidics Station 450 instrument, using the FS450_0001 fluidics script and GeneChip Hybridization, Wash, and Stain Kit.

scan_protocol: The Affymetrix GCS3000 7G instrument was used to acquire the microarray image data.

data_processing: CEL files were background corrected and normalized with RMA using oligo in R and then log2 transformed

source_name: log-phase cell culture

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA

growth_protocol: Mouse cell lines grown in serum harvested during log phase growth.

extract_protocol: Trizol followed by Qiagen RNEasy clean-up

treatment_protocol: not applicable

tag: cell line

tag: cell type


title: BCAS1 KO2

description:
Gene expression data fromBCAS1 knockout mouse brain
cerebrum

source_name: 8–9-week-old male BCAS1 knockout mouse

value: BCAS1 KO


title: MSC7A

description:
MT-323
Expression data from a squamous cell skin carcinoma derived cell line. This tumor developed on a Spretus/CBA crossed mouse.


title: CarC

description:
MT-325
Expression data from a squamous cell skin carcinoma derived cell line with spindle morphology

value: CarC


title: BCAS1 KO1

description:
Gene expression data from BCAS1 knockout mouse brain
cerebrum


title: B9

description:
MT-320
Expression data from a squamous cell skin carcinoma derived cell line


title: PDVC57

description:
MT-318
Expression data from a squamous cell skin carcinoma derived cell line


title: NK

description:
MT-322
Expression data from an immortalized keratinocyte cell line from a p53 null mouse

value: NK


title: MSN2

description:
MT-321
Expression data from a squamous cell skin carcinoma derived cell line with spindle morphology


title: CarB

description:
MT-326
Expression data from a squamous cell skin carcinoma derived cell line with spindle morphology

value: CarB


title: Mm_129_Q111_M_wk14_hyb0398

description: gene expression mouse striatum

source_name: Q111 mouse striatum 14 weeks old

tag: strain

tag: sample id

tag: mouse id

tag: allele nominal

tag: allele actual

tag: date harvest

value: M

value: striatum


title: MSCP1

description:
MT-316
Expression data from a squamous cell skin carcinoma derived cell line. This tumor developed on a Spretus/CBA crossed mouse.


title: wildtype 1

tag: tissue


title: MSC11B

description:
MT-317
Expression data from a squamous cell skin carcinoma derived cell line. This tumor developed on a Spretus/CBA crossed mouse.


title: E4

description:
MT-319
Expression data from a squamous cell skin carcinoma derived cell line


title: Hrasnull

description:
MT-313
Expression data from an immortalized keratinocyte cell line

value: Hrasnull


title: MSC12

description:
MT-309
Expression data from a squamous cell skin carcinoma derived cell line. This tumor developed on a Spretus/CBA crossed mouse.


title: A5

description:
MT-315
Expression data from a squamous cell skin carcinoma derived cell line with spindle morphology


title: D3DP

description:
MT-311
Expression data from a squamous cell skin carcinoma derived cell line with spindle morphology


title: B9ras

description:
MT-306
Expression data from a squamous cell skin carcinoma derived cell line


title: MSCP5

description:
MT-308
Expression data from a squamous cell skin carcinoma derived cell line. This tumor developed on a Spretus/CBA crossed mouse.


title: C5N

description:
MT-314
Expression data from an immortalized keratinocyte cell line


title: P6

description:
MT-310
Expression data from a papilloma derived cell line

value: papilloma derived cell line


title: B9rassmad

description:
MT-307
Expression data from a squamous cell skin carcinoma derived cell line


title: MSCb1

description:
MT-304
Expression data from a squamous cell skin carcinoma derived cell line. This tumor developed on a Spretus/CBA crossed mouse.


title: D3

description:
MT-303
Expression data from a squamous cell skin carcinoma derived cell line with spindle morphology


title: B9Smad

description:
MT-312
Expression data from a squamous cell skin carcinoma derived cell line with spindle morphology


title: PDV

description:
MT-301
Expression data from a squamous cell skin carcinoma derived cell line

value: PDV


title: 2945CA

description:
MT-302
Expression data from a squamous cell skin carcinoma derived cell line


title: SN161

description:
MT-305
Expression data from a squamous cell skin carcinoma derived cell line. This tumor developed on a Spretus/NIH crossed mouse.


title: Mouse brain tissue as control for Medulloblastoma model, GZH038

city: Memphis

first: David

last: Finkelstein

state: TN

address: 332 N. Lauderdale St.

department: Computational Biology

institute: St Jude Children's Research Hospital

description: Gene expression data from mouse brain tissue

hyb_protocol: Following fragmentation, 10 microg of cRNA were hybridized for 16 hr at 45C on GeneChip Mus musculus Genome Array Mouse 430 v2. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the GCS 3000

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.

source_name: mouse brain

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 microg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

tag: genotype/variation

value: PtenKO

value: cerebellum

tag: inducing age


title: Mouse brain tissue as control for Medulloblastoma model, GZH034


title: peyers patches, T1L reovirus 6h, replicate 3

city: Cambridge

first: Mukund

last: Varma

state: MA

address: 415 Main Street

institute: Broad Institute

description:
replicate 3
RB88

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were background corrected (Illumina BeadStudio), normalised using quantile normalization and then Log2 transformed.

source_name: Mouse peyers patches

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

extract_protocol: RNA was extracted with with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

tag: mouse strain

tag: mouse age

value: 6-8 weeks

value: peyers patches

tag: stimulation

value: T1L reovirus

tag: virus titre

tag: time(hr)


title: Mouse brain tissue as control for Medulloblastoma model, GZH030

tag: background strain

tag: gender


title: Mouse brain tissue as control for Medulloblastoma model, GZH037

value: wt


title: Mouse brain tissue as control for Medulloblastoma model, GZH033


title: Mouse brain tissue as control for Medulloblastoma model, GZH031


title: Mouse brain tissue as control for Medulloblastoma model, GZH032


title: peyers patches, T1L reovirus 6h, replicate 2

description:
replicate 2
RB87


title: peyers patches, Sham 6h, replicate 3

description:
replicate 3
RB86

value: Sham


title: peyers patches, T3D-RV reovirus 6h, replicate 3

description:
replicate 3
RB90

value: T3D-RV reovirus


title: Mouse brain tissue as control for Medulloblastoma model, GZH035


title: epithelium, T3D-RV reovirus 48h, replicate 3

description:
replicate 3
RB71

source_name: Mouse epithelium

value: epithelium


title: epithelium, T3D-RV reovirus 48h, replicate 2

description:
replicate 2
RB70


title: peyers patches, Sham 6h, replicate 1

description:
replicate 1
RB82


title: epithelium, T1L reovirus 48h, replicate 3

description:
replicate 3
RB69


title: Mouse brain tissue as control for Medulloblastoma model, GZH036


title: peyers patches, T3D-RV reovirus 6h, replicate 2

description:
replicate 2
RB89


title: peyers patches, Sham 6h, replicate 2

description:
replicate 2
RB85


title: peyers patches, T3D-RV reovirus 6h, replicate 1

description:
replicate 1
RB84


title: peyers patches, T1L reovirus 6h, replicate 1

description:
replicate 1
RB83


title: Medulloblastoma from Pten;p53 double knockout mouse induced at P0/1, GZH028

description: Gene expression data from Pten;p53 double knockout Medulloblastoma mouse model

value: F

tag: genotype/varation

value: Pten;p53 double knockout

value: Medulloblastoma


title: epithelium, T1L reovirus 48h, replicate 2

description:
replicate 2
RB68


title: VCaP treatred with (R)-9bMS

city: Ann Arbor

first: Rohit

last: Malik

state: MI

address: 1400 E Medical Center Dr.

department: Pathology

institute: University of Michigan

hyb_protocol: Oligoarray control targets and hybridization buffer (Agilent In Situ Hybridization Kit Plus) were added, and samples were applied to microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed sequential

scan_protocol: Scanned on an Agilent G2505B scanner.Images were quantified using Agilent Feature Extraction Software (version A.8.5.1.1).

data_processing: Agilent Feature Extraction Software (v 8.5.1.1) was used for background subtraction and LOWESS normalization. Control Features were omitted. The LogRatio and PValueLogRatio columns from each feature file were then merged into a single processed data matrix

organism: Homo sapiens

source_name: Cell line: VCaP

label_protocol: 10 ug of total RNA were primed with 2 ul of 100 uM T16N2 DNA primer at 70_C for 10 min, then reversed transcribed at 42_C for 1 h in the presence of 400 U SuperScript II RTase (Invitrogen), and 100 uM each dATP, dTTP, dGTP, with 25 uM dCTP, 25 uM Cy3-label.

growth_protocol: VCaP (DMEM), LNCaP-C4-2B (RPMI+F12), LAPC4 (IMDM), PC3 (DMEM), DU145 (MEM) were grown in indicated media with 10% of FBS and antibiotics.

extract_protocol: Total RNA was extracted using RNeasy Mini Kit (Qiagen)

treatment_protocol: Prostate cancer cell lines were grown in charcoal stripped media (androgen-deficient media for 24-48 hours) and then were treated with (R)-9bMS inhibitor for 24 hours.

tag: cell line

value: Prostate Cancer VCaP

tag: treatment

value: (R)-9bMS, 24 Hrs


title: Medulloblastoma from Pten;p53 double knockout mouse induced at P0/1, GZH027


title: epithelium, Sham 48h, replicate 2

description:
replicate 2
RB67


title: Medulloblastoma from Pten;p53 double knockout mouse induced at P0/1, GZH026


title: Medulloblastoma from Pten;p53 double knockout mouse induced at P0/1, GZH029


title: Medulloblastoma from Pten;p53 double knockout mouse induced at P0/1, GZH025

value: M


title: Medulloblastoma from Pten;p53 double knockout mouse induced at P0/1, GZH024


title: PC3 treatred with DMSO

source_name: Cell line: PC3

value: Prostate Cancer PC3

value: DMSO, 24 Hrs


title: peyers patches, T3D-RV reovirus 48h, replicate 3

description:
replicate 2
RB54


title: VCaP treatred with DMSO


title: epithelium, Sham 48h, replicate 1

description:
replicate 1
RB58


title: epithelium, T3D-RV reovirus 48h, replicate 1

description:
replicate 1
RB60


title: C4-2B treatred with DMSO

source_name: Cell line: C42B

value: Prostate Cancer C42B


title: peyers patches, Sham 48h, replicate 2

description:
replicate 2
RB49


title: LAPC4 treatred with DMSO

source_name: Cell line: LAPC4

value: Prostate Cancer LAPC4


title: LPS_1h-REP4

city: Cantoblanco

first: Juan

middle: Carlos

last: Oliveros

state: Madrid

address: Darwin 3

country: Spain

institute: CNB, CSIC

description:
MH-S cell line-Treated with lipopolysaccharide (LPS) , collected at 1h p.i.-REP4
MH-S cell line macrophage (alveolar) treated with lipopolysaccharide (LPS) , collected at 1h p.i.

hyb_protocol: Aliquots (1.2 µg) of antisense, labeled RNA were appropriately hybridized to Agilent oligomicroarrays. Each sample was directly hybridized on a single microarray.

scan_protocol: After washing, microarray slides were scanned using a Gene Pix 4100A scanner (Molecular Devices, Inc).

data_processing: Extraction of numerical data from scanned microarray images (one channel per slide) was carried out using the GenePix Pro software (Molecular Devices, Inc). Median intensity values for each spot were used in subsequent analysis. Background signal was removed by the normexp method (Silver et al., 2009) with an offset of 50. Background-removed intensities were normalized by quantile adjustment of all replicates involved in each comparison. Both background removal and data normalization steps were performed with limma package (Ritchie et al., 2015) (functions normexp and normalizeQuantiles, respectively).

source_name: MH-S cell line macrophage (alveolar)

label_protocol: One microgram of total RNA from each sample was amino-allyl labeled and amplified using the Amino Allyl MessageAmp II aRNA Amplification Kit (Applied Biosystems, Foster City, CA). Aliquots of antisense amplified RNA were fluorescently labeled using Cy3, according to manufacturer’s instructions.

growth_protocol: MH-S cells (ATCC® CRL-2019™) were originally obtained from bronchoalveolar lavage of BALB/cj mice and were in vitro transformed with SV40 (Mbawuike & Herscowitz, 1989). They lack contact inhibition of growth and are trypsin-sensitive but they maintain typical macrophage morphology, and express cell surface Ia and Mac-1 antigens. MH-S cells were maintained in RPMI 1640 medium supplemented with 10% fetal bovine serum (FBS), 4 mM L-glutamine, 100 U/ml penicillin and 100 U/ml streptomycin. All cells were incubated at 37ºC in a 5% CO2 atmosphere.

extract_protocol: For human RSV, MH-S subconfluent monolayers were either mock-infected or infected with RSV at a multiplicity of infection (MOI) of 3 plaque forming units (pfu) per cell. Cells were incubated with the viral inoculum in RPMI with 2% FBS (RPMI2) for 90 min at 37ºC. After that time, the inoculum was removed and fresh RPMI2 was added. At 1 h and 18 h post-infection, culture supernatants were removed, cells were trypsinized, washed with PBS and RNA was extracted. Infection of MH-S with influenza virus was done similarly at a MOI of 3 pfu/cell in RPMI2 and harvested 7 h after infection.

treatment_protocol: For S. aureus, S. pneumoniae,  and K. pneumoniae infections, MH-S cells were incubated with bacteria at a ratio of 1:50 for 30 min. Subsequently, cells were washed with PBS; then, fresh medium with gentamycin (100 µg/ml) and penicillin (100 U/ml) was added. At 1h, 4h, or 8h post-infection (Table I), cells were harvested, and total RNA extracted and stored at -80ºC until analysis. In addition, MH-S subconfluent monolayers were also incubated in quadruplicate with 1µg/ml of smooth lipopolysaccharide (LPS) from Escherichia coli O55B5 (Sigma-Aldrich, St. Louis, MO, U.S.A.) or buffer for 1h. Then culture supernatants were removed and cells were scraped and washed with PBS before RNA extraction.

tag: strain

value: BALB/c

value: MH-S cell line macrophage (alveolar)

tag: infectant

value: lipopolysaccharide (LPS)

tag: time post infection


title: PC3 treatred with (R)-9bMS


title: peyers patches, Sham 48h, replicate 3

description:
replicate 3
RB50

value: 6-8 weeks

value: peyers patches


title: epithelium, T3D-RV reovirus 6h, replicate 2

description:
replicate 2
RB45

value: T3D-RV reovirus


title: DU145 treatred with DMSO

source_name: Cell line: Du145

value: Prostate Cancer Du145


title: C4-2B treatred with (R)-9bMS


title: LPS_1h-REP1

description:
MH-S cell line-Treated with lipopolysaccharide (LPS) , collected at 1h p.i.-REP1
MH-S cell line macrophage (alveolar) treated with lipopolysaccharide (LPS) , collected at 1h p.i.


title: peyers patches, T1L reovirus 48h, replicate 1

description:
replicate 1
RB47

value: T1L reovirus


title: LPS_NI-REP4

description:
MH-S cell line-Not infected-REP4
MH-S cell line macrophage (alveolar). Not Infected.

value: Not Infected


title: LPS_1h-REP2

description:
MH-S cell line-treated with lipopolysaccharide (LPS) , collected at 1h p.i.-REP2
MH-S cell line macrophage (alveolar) treated with lipopolysaccharide (LPS) , collected at 1h p.i.


title: peyers patches, T1L reovirus 48h, replicate 3

description:
replicate 3
RB52


title: DU145 treatred with (R)-9bMS


title: LPS_1h-REP3

description:
MH-S cell line-Treated with lipopolysaccharide (LPS) , collected at 1h p.i.-REP3
MH-S cell line macrophage (alveolar) treated with lipopolysaccharide (LPS) , collected at 1h p.i.


title: epithelium, Sham 6h, replicate 3

description:
replicate 2
RB43

value: epithelium

value: Sham


title: peyers patches, T3D-RV reovirus 48h, replicate 2

description:
replicate 2
RB53


title: peyers patches, Sham 48h, replicate 1

description:
replicate 1
RB46


title: epithelium, T1L reovirus 6h, replicate 3

description:
replicate 3
RB44


title: peyers patches, T3D-RV reovirus 48h, replicate 1

description:
replicate 1
RB48


title: LAPC4 treatred with (R)-9bMS

value: (R)-9bMS, 24 Hrs


title: LPS_NI-REP3

description:
MH-S cell line-Not infected-REP3
MH-S cell line macrophage (alveolar). Not Infected.


title: peyers patches, T1L reovirus 48h, replicate 2

description:
replicate 2
RB51


title: LPS_NI-REP2

description:
MH-S cell line-Not infected-REP2
MH-S cell line macrophage (alveolar). Not Infected.


title: IAV_PR8_7h-REP3

description:
MH-S cell line-Infected with influenza A virus (PR8), collected at 7h p.i.-REP3
MH-S cell line macrophage (alveolar) infected with influenza A virus (PR8), collected at 7h p.i.

value: influenza A virus (PR8)


title: epithelium, T3D-RV reovirus 6h, replicate 1

description:
replicate 1
RB42


title: LPS_NI-REP1

description:
MH-S cell line-Not infected-REP1
MH-S cell line macrophage (alveolar). Not Infected.


title: IAV_PR8deltaNS1_7h-REP1

description:
MH-S cell line-Infected with influenza A virus (PR8 delta NS1), collected at 7h p.i.-REP1
MH-S cell line macrophage (alveolar) infected with influenza A virus (PR8 delta NS1), collected at 7h p.i.

value: influenza A virus (PR8 delta NS1)


title: epithelium, T3D-RV reovirus 6h, replicate 3

description:
replicate 3
RB41


title: epithelium, T1L reovirus 6h, replicate 1

description:
replicate 1
RB39


title: epithelium, T1L reovirus 48h, replicate 1

description:
replicate 1
RB59


title: epithelium, T1L reovirus 6h, replicate 2

description:
replicate 2
RB40


title: epithelium, Sham 6h, replicate 1

description:
replicate 1
RB37


title: epithelium, Sham 6h, replicate 2

description:
replicate 1
RB38


title: lamina propria, T3D-RV reovirus 6h, replicate 3

description:
replicate 3
RB36

source_name: Mouse lamina propria

value: lamina propria


title: lamina propria, T1L reovirus 6h, replicate 1

description:
replicate 1
RB29


title: RSV_Long_1h-REP1

description:
MH-S cell line-Infected with respiratory syncytial virus Long (RSV Long), collected at 1h p.i.-REP1
MH-S cell line macrophage (alveolar) infected with respiratory syncytial virus Long (RSV Long), collected at 1h p.i.


title: RSV_Long_18h-REP2

description:
MH-S cell line-Infected with respiratory syncytial virus Long (RSV Long), collected at 18h p.i.-REP2
MH-S cell line macrophage (alveolar) infected with respiratory syncytial virus Long (RSV Long), collected at 18h p.i.


title: RSV_A2_18h-REP4

description:
MH-S cell line-Infected with respiratory syncytial virus A2 (RSV A2), collected at 18h p.i.-REP4
MH-S cell line macrophage (alveolar) infected with respiratory syncytial virus A2 (RSV A2), collected at 18h p.i.

value: respiratory syncytial virus A2 (RSV A2)


title: IAV_PR8_7h-REP1

description:
MH-S cell line-Infected with influenza A virus (PR8), collected at 7h p.i.-REP1
MH-S cell line macrophage (alveolar) infected with influenza A virus (PR8), collected at 7h p.i.


title: IAV_PR8_7h-REP2

description:
MH-S cell line-Infected with influenza A virus (PR8), collected at 7h p.i.-REP2
MH-S cell line macrophage (alveolar) infected with influenza A virus (PR8), collected at 7h p.i.


title: lamina propria, Sham 6h, replicate 3

description:
replicate 3
RB34


title: mesenteric lymph node, T3D-RV reovirus 6h, replicate 3

description:
replicate 3
RB27

source_name: Mouse mesenteric lymph node

value: mesenteric lymph node


title: RSV_Long_18h-REP3

description:
MH-S cell line-Infected with respiratory syncytial virus Long (RSV Long), collected at 18h p.i.-REP3
MH-S cell line macrophage (alveolar) infected with respiratory syncytial virus Long (RSV Long), collected at 18h p.i.

value: BALB/c