title: Patient L247 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L247_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L247 Diagnostic

value: Patient L247


title: Patient L247 Remission

status: Public on Apr 10 2017

type: genomic

city: Philadelphia, PA

first: Richard

last: Aplenc

state: PA

address: 3501 Civic Center Blvd

department: Division of Oncology

country: USA

institute: Children's Hospital of Philadelphia

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L247_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

hyb_protocol: 20 hours at 48°C, according to manufacturer's instructions

scan_protocol: arrays were scanned using iScan

data_processing:
Genomic DNA extracted from AML diagnostic and remission bone marrow samples and genotyped using Human Omni 2.5M SNP arrays (2.5-4v1-D or 2.5-4v1-H) (Illumina).
Raw image data were saved to a project using Genome Studio (Illumina) and B-Allele Frequencies and Log-R Ratios were exported for analysis using ASCAT in R.

label: cy3 and cy5

molecule: genomic DNA

organism: Homo sapiens

source_name: Patient L247 Remission

label_protocol: 200 ng of genomic DNA was whole-genome amplified in an overnight reaction at 37°C using amplification master mix, according to the manufacturer's instructions

extract_protocol: Genomic DNA was extracted using the DNeasy Blood & Tissues Kit  from Qiagen according to manufacturer's instructions.  DNA concentration was determined by measuring absorbance at 260nm on a Nanodrop2000

tag: individual

tag: disease state

value: AML

tag: tissue

value: Bone Marrow

tag: patient status

value: Remission


title: GW18_CTX_93

type: RNA

city: San Francisco

first: Chandrasekhar

middle: S

last: Raju

state: CA

address: 1450 3rd Street

department: Neurosurgery

institute: UCSF

description: section number 77

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: The data were quantile normalized in R.

label: biotin

molecule: total RNA

source_name: Human neocortex

label_protocol: Biotinylated cRNA were prepared with the Ambion Illumina TotalPrep RNA Amplification kit for Illumina arrays

extract_protocol: RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser 2100.

tag: corelabel

tag: age

tag: rin

value: E


title: 6929726159_R03C01_SLE patient (case)

city: OKC

first: Jonathan

middle: Daniel

last: Wren

state: OK

address: 825 NE 13th St

department: Arthritis & Clinical Immunology

institute: Oklahoma Medical Research Foundation

hyb_protocol: Hybridization: 22 hr at 48 degrees C. (full protocol details for all steps can be found in Illumina Infinium HD Methylation Assay manual)

scan_protocol: iScan Scan Setting: Methylation  NXT

data_processing:
Average Beta value. β values are calculated using the formula:  β = Methylated / (Methylated + Unmethylated + 100)
The average beta calculation is given by the formula above (no special software)

label: cy3, cy5

source_name: Naïve CD4+ T cell

label_protocol: Staining Protocol (Tecan Freedom Evo): XStain HD BeadChip

growth_protocol: n/a (isolated cell populations)

extract_protocol: Naïve CD4+ T cells were isolated from whole blood by negative selection using the Naïve CD4+ T cell Isolation Kit II, human (Miltenyi Biotec, San Diego, CA, USA) according to manufacturer’s instructions. This kit uses an antibody cocktail to directly label the surface of undesired cells which are then bound to magnetic beads, allowing unlabeled naïve CD4+ T cells to be separated. The purity of the isolated populations was confirmed using surface protein staining and flow cytometry as CD3+, CD4+ and CD45RA+ using human FITC-conjugated human anti-CD3, human PE-conjugated anti-CD4, and human Pacific Blue-conjugated anti-CD45RA antibodies (BioLegend, San Diego, CA, USA). Cell population purity for all samples included in this study was >95%. Genomic DNA was extracted from isolated naïve CD4+ T cell populations using the DNeasy Blood and Tissue Kit (Qiagen, Valencia, CA, USA). Total RNA was also extracted simultaneously by lysing cells in TRIzol Reagent (ThermoFisher Scientific, Grand Island, NY, USA) and then purified using Direct-zol RNA MiniPrep Kit (Zymo Research, Irvine, CA, USA) according to manufacturer’s instructions.

tag: subject status

value: Systemic lupus erythematosus patient

tag: Sex

value: female

tag: ethnicity

value: African-American

tag: age (yrs)

tag: sledai score

value: peripheral blood

tag: cell type

value: Naïve CD4+ T cell


title: 6929726159_R02C01_SLE patient (case)

value: European-American


title: Patient L245 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L245_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L245 Diagnostic

value: Patient L245

value: Diagnostic


title: Patient L245 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L245_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L245 Remission


title: 6929726159_R01C01_SLE patient (case)


title: Patient L244 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L244_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L244 Diagnostic

value: Patient L244


title: Patient L246 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L246_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L246 Diagnostic

value: Patient L246


title: Patient L243 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L243_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L243 Diagnostic

value: Patient L243


title: GW18_CTX_87

description: section number 72

value: A


title: GW18_CTX_86

description: section number 71

value: I


title: GW18_CTX_85

description: section number 70


title: GW18_CTX_81

description: section number 66

value: G


title: GW18_CTX_82

description: section number 67

value: B


title: Patient L248 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L248_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L248 Remission

value: Patient L248

value: AML

value: Bone Marrow

value: Remission


title: Patient L242 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L242_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L242 Diagnostic

value: Patient L242


title: GW18_CTX_84

description: section number 69


title: Patient L242 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L242_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L242 Remission


title: Patient L243 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L243_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L243 Remission


title: GW18_CTX_80

description: section number 65


title: Patient L241 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L241_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L241 Remission

value: Patient L241


title: Patient L240 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L240_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L240 Diagnostic

value: Patient L240


title: Patient L241 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L241_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L241 Diagnostic


title: Patient L240 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L240_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L240 Remission


title: Patient L239 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L239_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L239 Remission

value: Patient L239


title: Patient L239 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L239_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L239 Diagnostic


title: GW18_CTX_79

description: section number 64

source_name: Human neocortex

value: D


title: Patient L238 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L238_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L238 Diagnostic

value: Patient L238

value: Diagnostic


title: Patient L238 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L238_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L238 Remission


title: Patient L236 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L236_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L236 Diagnostic

value: Patient L236


title: Patient L237 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L237_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L237 Remission

value: Patient L237


title: Patient L237 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L237_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L237 Diagnostic


title: Patient L235 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L235_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L235 Remission

value: Patient L235


title: Patient L234 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L234_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L234 Diagnostic

value: Patient L234


title: Patient L234 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L234_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L234 Remission


title: Patient L233 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L233_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L233 Diagnostic

value: Patient L233


title: Patient L233 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L233_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L233 Remission


title: Patient L232 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L232_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L232 Diagnostic

value: Patient L232


title: GW18_CTX_70

description: section number 57


title: GW18_CTX_78

description: section number 63

value: J


title: GW18_CTX_68

description: section number 55

value: G


title: GW18_CTX_73

description: section number 60

value: L


title: GW18_CTX_71

description: section number 58

value: B


title: GW18_CTX_76

description: section number 61

value: C


title: GW18_CTX_72

description: section number 59


title: Patient L235 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L235_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L235 Diagnostic

value: AML

value: Bone Marrow


title: Patient L232 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L232_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L232 Remission

value: Remission


title: Patient L230 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L230_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L230 Diagnostic

value: Patient L230


title: Patient L230 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L230_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L230 Remission


title: Patient L231 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L231_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L231 Remission

value: Patient L231


title: GW18_CTX_66

description: section number 53

source_name: Human neocortex

value: F


title: Patient L229 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L229_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L229 Diagnostic

value: Patient L229

value: Diagnostic


title: Patient L229 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L229_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L229 Remission


title: Patient L228 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L228_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L228 Diagnostic

value: Patient L228


title: Patient L228 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L228_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L228 Remission


title: GW18_CTX_67

description: section number 54


title: PC237N

city: Huntsville

first: Marie

middle: K

last: Kirby

state: AL

address: 601 Genome Way NE

institute: HudsonAlpha Institute for Biotechnology

hyb_protocol: hyb was performed using standard manufacture protocol

scan_protocol: scan was performed using standard manufacture protocol

data_processing:
Unmethylated and methylated signal intensities in matrix_signal_intensities.txt Series supplementary file.
We converted data points that were not significant above background intensity to NA. We removed CpGs having greater than 10% missing values prior to normalization. Data was normalized using the Combat R package. Post-ComBat normalization, we observed that Infinium I and Infinium II assays showed two distinct bimodal b-value distributions, so we developed a regression method to convert the type I and type II assays to a single bimondal b-distribution corresponding to Reduced Representation Bisulfite Sequencing b-values. After this conversion, any beta score greater than 1 was assigned a 1, and any beta score less than 0 was assigned a 0. The equations for correction are: Infinium I : RRBS = 0.00209 + 0.4377 x Methyl450 + 0.6303 x Methyl4502 ; Infinium II : RRBS = -0.01146 + 0.2541 x Methyl450 + 0.9832 x Methyl4502

label: Cy5 and cy3

source_name: prostate benign tissue

label_protocol: Labeling was performed using standard manufacture protocol.

extract_protocol: DNA was extracted from tissue lysate using the Qiagen AllPrep DNA/RNA mini kit

value: prostate benign tissue

tag: ethinicity


title: Patient L231 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L231_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L231 Diagnostic


title: GW18_CTX_65

description: section number 52


title: PC393N


title: PC370N

value: Caucasian


title: PC157N


title: Patient L227 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L227_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L227 Remission

value: Patient L227


title: PC594N


title: PC99N

value: Hispanic


title: Patient L226 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L226_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L226 Diagnostic

value: Patient L226


title: PC159N


title: Patient L225 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L225_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L225 Diagnostic

value: Patient L225


title: Patient L227 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L227_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L227 Diagnostic


title: GW18_CTX_62

description: section number 49

value: I


title: GW18_CTX_61

description: section number 48

value: H


title: GW18_CTX_64

description: section number 51

value: K


title: GW18_CTX_59

description: section number 47


title: Patient L224 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L224_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L224 Diagnostic

value: Patient L224

value: AML

value: Bone Marrow


title: Patient L223 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L223_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L223 Remission

value: Patient L223

value: Remission


title: PC185N


title: Patient L222 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L222_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L222 Remission

value: Patient L222


title: Patient L223 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L223_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L223 Diagnostic

value: Diagnostic


title: PC274N


title: PC184N


title: PC84N


title: GW18_CTX_58

description: section number 46

value: E


title: Patient L222 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L222_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L222 Diagnostic


title: PC453N

value: prostate benign tissue


title: GW18_CTX_54

description: section number 42


title: Patient L219 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L219_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L219 Diagnostic

value: Patient L219


title: GW18_CTX_57

description: section number 45

source_name: Human neocortex

value: L


title: Patient L219 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L219_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L219 Remission


title: Patient L220 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L220_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L220 Remission

value: Patient L220


title: GW18_CTX_55

description: section number 43

value: C


title: Patient L218 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L218_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L218 Diagnostic

value: Patient L218


title: Patient L218 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L218_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L218 Remission


title: PC450N

source_name: prostate benign tissue


title: PC188N

value: Caucasian


title: Patient L220 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L220_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L220 Diagnostic


title: GW18_CTX_56

description: section number 44

value: F


title: PC645N


title: PC375N


title: Patient L217 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L217_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L217 Remission

value: Patient L217


title: Patient L215 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L215_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L215 Diagnostic

value: Patient L215


title: Patient L217 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L217_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L217 Diagnostic

value: AML


title: Patient L214 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L214_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L214 Diagnostic

value: Patient L214

value: Bone Marrow


title: Patient L212 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L212_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L212 Diagnostic

value: Patient L212


title: Patient L212 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L212_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L212 Remission

value: Remission


title: Patient L213 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L213_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L213 Diagnostic

value: Patient L213

value: Diagnostic


title: Patient L214 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L214_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L214 Remission


title: PC473N

value: prostate benign tissue

value: Asian


title: Patient L213 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L213_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L213 Remission


title: GW18_CTX_52

description: section number 40

value: H


title: Patient L211 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L211_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L211 Diagnostic

value: Patient L211


title: Patient L215 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L215_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L215 Remission


title: Patient L210 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L210_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L210 Diagnostic

value: Patient L210


title: GW18_CTX_50

description: section number 38

source_name: Human neocortex

value: G


title: GW18_CTX_51

description: section number 39

value: B


title: PC629N


title: PC430N

value: Caucasian


title: Patient L210 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L210_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L210 Remission


title: GW18_CTX_53

description: section number 41

value: D


title: Patient L209 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L209_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L209 Diagnostic

value: Patient L209


title: Patient L209 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L209_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L209 Remission

value: AML


title: PC457N

source_name: prostate benign tissue


title: PC448N


title: GW18_CTX_48

description: section number 36

value: L


title: Patient L208 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L208_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L208 Diagnostic

value: Patient L208

value: Bone Marrow


title: PC470N


title: GW18_CTX_49

description: section number 37

value: C


title: Patient L207 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L207_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L207 Diagnostic

value: Patient L207


title: GW18_CTX_44

description: section number 35


title: Patient L208 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L208_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L208 Remission

value: Remission


title: Patient L206 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L206_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L206 Remission

value: Patient L206


title: GW18_CTX_43

description: section number 34

value: K


title: Patient L206 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L206_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L206 Diagnostic

value: Diagnostic


title: Patient L205 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L205_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L205 Diagnostic

value: Patient L205


title: Patient L205 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L205_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L205 Remission


title: Patient L204 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L204_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L204 Diagnostic

value: Patient L204


title: GW18_CTX_38

description: section number 30


title: GW18_CTX_39

description: section number 31


title: Patient L204 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L204_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L204 Remission


title: GW18_CTX_40

description: section number 32

value: F


title: Patient L203 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L203_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L203 Diagnostic

value: Patient L203


title: PC367N

value: prostate benign tissue

value: Caucasian


title: Patient L202 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L202_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L202 Remission

value: Patient L202


title: Patient L201 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L201_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L201 Diagnostic

value: Patient L201

value: AML


title: PC86N


title: PC480N


title: PC88N


title: PC646N


title: Patient L202 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L202_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L202 Diagnostic


title: Patient L201 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L201_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L201 Remission


title: Patient L200 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L200_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L200 Diagnostic

value: Patient L200


title: GW18_CTX_36

description: section number 28

source_name: Human neocortex

value: A


title: PC455N

source_name: prostate benign tissue


title: GW18_CTX_37

description: section number 29

value: E


title: PC363N


title: PC498N


title: GW18_CTX_35

description: section number 27

value: J


title: PC634N


title: GW18_CTX_34

description: section number 26


title: Patient L198 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L198_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L198 Diagnostic

value: Patient L198

value: Bone Marrow


title: GW18_CTX_32

description: section number 25

value: G


title: Patient L198 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L198_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L198 Remission

value: Remission


title: GW18_CTX_31

description: section number 24

value: I


title: Patient L197 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L197_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L197 Diagnostic

value: Patient L197

value: Diagnostic


title: Patient L203 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L203_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L203 Remission

value: Patient L203


title: PC575N

value: prostate benign tissue


title: Patient L197 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L197_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L197 Remission


title: PC621N

value: Caucasian


title: Patient L199 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L199_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L199 Remission

value: Patient L199


title: Patient L199 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L199_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L199 Diagnostic


title: Patient L196 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L196_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L196 Diagnostic

value: Patient L196


title: Patient L196 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L196_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L196 Remission

value: AML


title: Patient L194 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L194_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L194 Diagnostic

value: Patient L194


title: PC482N


title: PC45N


title: PC166N


title: Patient L194 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L194_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L194 Remission


title: Patient L193 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L193_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L193 Diagnostic

value: Patient L193


title: GW18_CTX_30

description: section number 23


title: GW18_CTX_29

description: section number 22

value: B


title: Patient L193 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L193_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L193 Remission


title: GW18_CTX_28

description: section number 21

value: L


title: Patient L192 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L192_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L192 Diagnostic

value: Patient L192


title: Patient L192 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L192_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L192 Remission

value: Bone Marrow


title: Patient L191 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L191_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L191 Diagnostic

value: Patient L191


title: Patient L191 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L191_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L191 Remission

value: Remission


title: PC366N

source_name: prostate benign tissue


title: Patient L189 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L189_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L189 Remission

value: Patient L189


title: PC538N


title: Patient L190 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L190_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L190 Diagnostic

value: Patient L190


title: PC527N


title: GW18_CTX_25

description: section number 19

source_name: Human neocortex

value: F


title: GW18_CTX_23

description: section number 17

value: K


title: Patient L187 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L187_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L187 Diagnostic

value: Patient L187

value: Diagnostic


title: Patient L188 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L188_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L188 Remission

value: Patient L188


title: GW18_CTX_24

description: section number 18


title: GW18_CTX_27

description: section number 20

value: E


title: PC604N

value: prostate benign tissue


title: Patient L187 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L187_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L187 Remission

value: AML


title: PC252N

value: Caucasian


title: GW18_CTX_21

description: section number 16

value: C


title: Patient L186 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L186_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L186 Diagnostic

value: Patient L186


title: Patient L188 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L188_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L188 Diagnostic


title: Patient L185 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L185_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L185 Diagnostic

value: Patient L185


title: PC423N


title: GW18_CTX_19

description: section number 14

value: H


title: Patient L184 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L184_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L184 Diagnostic

value: Patient L184

value: Bone Marrow


title: GW18_CTX_20

description: section number 15


title: Patient L185 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L185_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L185 Remission

value: Remission


title: Patient L184 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L184_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L184 Remission


title: Patient L183 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L183_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L183 Remission

value: Patient L183


title: Patient L181 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L181_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L181 Diagnostic

value: Patient L181


title: PC452N


title: PC490N


title: PC636N


title: Patient L181 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L181_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L181 Remission


title: Patient L183 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L183_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L183 Diagnostic


title: PC599N

source_name: prostate benign tissue


title: GW18_CTX_18

description: section number 13

value: A


title: GW18_CTX_41

description: section number 33

value: L


title: Patient L180 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L180_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L180 Remission

value: Patient L180


title: GW18_CTX_16

description: section number 12

value: F


title: Patient L180 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L180_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L180 Diagnostic

value: Diagnostic


title: GW18_CTX_15

description: section number 11

source_name: Human neocortex

value: E


title: Patient L179 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L179_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L179 Diagnostic

value: Patient L179

value: AML


title: Patient L179 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L179_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L179 Remission


title: PC485N

value: prostate benign tissue

value: Caucasian


title: Patient L177 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L177_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L177 Remission

value: Patient L177


title: PC474N


title: GW18_CTX_14

description: section number 10

value: D


title: Patient L178 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L178_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L178 Remission

value: Patient L178


title: Patient L178 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L178_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L178 Diagnostic

value: Bone Marrow


title: GW18_CTX_12

description: section number 9

value: B


title: Patient L177 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L177_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L177 Diagnostic


title: Patient L175 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L175_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L175 Diagnostic

value: Patient L175


title: GW18_CTX_7

description: section number 6

value: I


title: Patient L175 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L175_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L175 Remission

value: Remission


title: GW18_CTX_9

description: section number 8

value: K


title: PC625N


title: Patient L174 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L174_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L174 Diagnostic

value: Patient L174


title: PC537N


title: Patient L173 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L173_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L173 Remission

value: Patient L173


title: PC405N


title: Patient L173 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L173_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L173 Diagnostic

value: Diagnostic


title: GW18_CTX_5

description: section number 4


title: Patient L171 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L171_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L171 Diagnostic

value: Patient L171


title: Patient L172 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L172_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L172 Diagnostic

value: Patient L172


title: Patient L171 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L171_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L171 Remission

value: AML


title: Patient L170 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L170_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L170 Diagnostic

value: Patient L170


title: Patient L170 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L170_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L170 Remission


title: Patient L169 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L169_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L169 Diagnostic

value: Patient L169


title: Patient L169 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L169_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L169 Remission


title: PC343N

source_name: prostate benign tissue

value: prostate benign tissue

value: Caucasian


title: PC398N


title: GW18_CTX_2

description: section number 1

source_name: Human neocortex

value: H


title: PC627N


title: Patient L168 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L168_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L168 Remission

value: Patient L168

value: Bone Marrow


title: PC97N


title: Patient L167 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L167_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L167 Diagnostic

value: Patient L167


title: TPK471

city: Minneapolis

first: Todd

middle: P

last: Knutson

state: MN

address: 117 Pleasant St SE

department: Minnesota Supercomputing Institute

institute: University of Minnesota

description: T47D_PRB_K388R_progesterone_aglepristone_6h_expt_2_rep_2

data_processing: The data were filtered and any probes with a detection P value less than 0.05 were removed. The data was then normalized using log2 transformation and quantile normalization with R using the lumi bioconductor package

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with progesterone and aglepristone for 6 hours

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

growth_protocol: Samples grown in complete medium (MEM, 5% FBS, 1% NEAA, 1% pen/strep, 6ng/ml insulin, 200 ug/ml G418) before 1 day starvation in IMEM medium, then treated in IMEM medium for 6 hr.

extract_protocol: RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

treatment_protocol: Samples treated in IMEM medium, with or without progestin (10e-8 M) and/or antiprogestin (10e-7 M) for 6 hr.

tag: parental cell line

value: Breast

tag: stable vector integration

tag: treatment

value: progesterone and aglepristone

tag: time point

value: 6 hr


title: PC563N


title: TPK469

description: T47D_PRB_K388R_progesterone_onapristone_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with progesterone and onapristone for 6 hours

value: progesterone and onapristone


title: TPK470

description: T47D_PRB_K388R_progesterone_aglepristone_6h_expt_2_rep_1


title: TPK472

description: T47D_PRB_K388R_progesterone_aglepristone_6h_expt_2_rep_3


title: GW18_CTX_4

description: section number 3

value: D


title: GW18_CTX_3

description: section number 2

value: A


title: Patient L174 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L174_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L174 Remission

tag: individual

value: Patient L174

tag: disease state

value: Remission


title: Patient L168 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L168_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L168 Diagnostic

value: AML

tag: tissue

tag: patient status

value: Diagnostic


title: TPK468

description: T47D_PRB_K388R_progesterone_onapristone_6h_expt_2_rep_2


title: Patient L166 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L166_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L166 Diagnostic

value: Patient L166


title: PC582N

value: prostate benign tissue

tag: age


title: TPK467

description: T47D_PRB_K388R_progesterone_onapristone_6h_expt_2_rep_1


title: Patient L163 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L163_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L163 Diagnostic

value: Patient L163


title: Patient L162 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L162_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L162 Diagnostic

value: Patient L162


title: Patient L167 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L167_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L167 Remission


title: Patient L165 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L165_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L165 Diagnostic

value: Patient L165


title: Patient L162 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L162_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L162 Remission

value: Bone Marrow


title: PC551N

value: Caucasian


title: PC477N


title: Patient L164 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L164_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L164 Diagnostic

value: Patient L164


title: Patient L161 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L161_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L161 Remission

value: Patient L161


title: Patient L160 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L160_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L160 Diagnostic

value: Patient L160


title: PC593N

source_name: prostate benign tissue


title: PC501N


title: Patient L159 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L159_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L159 Diagnostic

value: Patient L159


title: TPK464

description: T47D_PRB_K388R_progesterone_RU486_6h_expt_2_rep_1

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with progesterone and RU486 for 6 hours

value: Breast

value: progesterone and RU486

value: 6 hr


title: Patient L161 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L161_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L161 Diagnostic


title: PC237T

source_name: prostate cancer tissue

value: prostate cancer tissue


title: PC47N


title: Patient L159 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L159_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L159 Remission

value: AML

value: Remission


title: TPK465

description: T47D_PRB_K388R_progesterone_RU486_6h_expt_2_rep_2


title: GW18_CTX_6

description: section number 5

source_name: Human neocortex

tag: corelabel

tag: rin

value: G


title: TB2682T


title: S07.8980T


title: TPK462

description: T47D_PRB_K388R_ethanol_aglepristone_6h_expt_2_rep_2

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with ethanol and aglepristone for 6 hours

value: ethanol and aglepristone


title: Patient L158 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L158_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L158 Diagnostic

value: Patient L158

value: Diagnostic


title: TPK463

description: T47D_PRB_K388R_ethanol_aglepristone_6h_expt_2_rep_3


title: Patient L157 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L157_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L157 Diagnostic

value: Patient L157


title: Patient L156 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L156_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L156 Diagnostic

value: Patient L156

value: Bone Marrow


title: Patient L157 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L157_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L157 Remission


title: Patient L156 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L156_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L156 Remission


title: Patient L153 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L153_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L153 Diagnostic

value: Patient L153


title: Patient L155 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L155_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L155 Diagnostic

value: Patient L155


title: TPK461

description: T47D_PRB_K388R_ethanol_aglepristone_6h_expt_2_rep_1


title: Patient L152 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L152_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L152 Diagnostic

value: Patient L152


title: PC242T

value: Caucasian


title: Patient L152 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L152_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L152 Remission


title: Patient L153 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L153_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L153 Remission


title: S07.8392T


title: Patient L151 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L151_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L151 Diagnostic

value: Patient L151


title: Patient L150 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L150_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L150 Diagnostic

value: Patient L150


title: S07.9957


title: PC85T


title: Patient L155 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L155_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L155 Remission


title: Patient L148 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L148_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L148 Diagnostic

value: Patient L148


title: Patient L147 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L147_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L147 Diagnostic

value: Patient L147


title: TPK466

description: T47D_PRB_K388R_progesterone_RU486_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with progesterone and RU486 for 6 hours

value: Breast

value: progesterone and RU486

value: 6 hr


title: TPK460

description: T47D_PRB_K388R_ethanol_onapristone_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with ethanol and onapristone for 6 hours

value: ethanol and onapristone


title: TPK456

description: T47D_PRB_K388R_ethanol_RU486_6h_expt_2_rep_2

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with ethanol and RU486, for 6 hours

value: ethanol and RU486


title: TPK457

description: T47D_PRB_K388R_ethanol_RU486_6h_expt_2_rep_3


title: Patient L147 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L147_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L147 Remission

value: AML

value: Remission


title: PC86T

source_name: prostate cancer tissue

value: prostate cancer tissue


title: TPK458

description: T47D_PRB_K388R_ethanol_onapristone_6h_expt_2_rep_1


title: TPK455

description: T47D_PRB_K388R_ethanol_RU486_6h_expt_2_rep_1


title: Patient L145 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L145_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L145 Diagnostic

value: Patient L145

value: Bone Marrow

value: Diagnostic


title: TPK459

description: T47D_PRB_K388R_ethanol_onapristone_6h_expt_2_rep_2


title: PC367T


title: Patient L144 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L144_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L144 Remission

value: Patient L144


title: Patient L142 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L142_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L142 Diagnostic

value: Patient L142


title: Patient L142 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L142_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L142 Remission


title: Patient L144 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L144_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L144 Diagnostic


title: TPK66

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, treated with R5020 for 6 hours


title: Patient L140 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L140_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L140 Remission

value: Patient L140


title: TPK60


title: PC643T

value: Caucasian


title: Patient L140 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L140_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L140 Diagnostic


title: PC648T


title: Patient L139 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L139_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L139 Diagnostic

value: Patient L139


title: Patient L139 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L139_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L139 Remission


title: Patient L138 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L138_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L138 Diagnostic

value: Patient L138


title: TPK453

description: T47D_PRB_K388R_ethanol_progesterone_6h_expt_2_rep_2

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with ethanol and progesterone, for 6 hours

value: Breast

value: ethanol and progesterone


title: Patient L138 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L138_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L138 Remission


title: TPK454

description: T47D_PRB_K388R_ethanol_progesterone_6h_expt_2_rep_3

value: 6 hr


title: PC646T


title: PC19N

source_name: prostate benign tissue

value: prostate benign tissue


title: PC159T


title: PC166T


title: Patient L136 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L136_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L136 Diagnostic

value: Patient L136


title: TPK65

description: T47D_PRB_K388R_ethanol_NA_6h_expt_1_rep_5

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, treated with ethanol (vehicle), for 6 hours

value: ethanol


title: TPK58

description: T47D_PRB_K388R_ethanol_NA_6h_expt_1_rep_4


title: TPK452

description: T47D_PRB_K388R_ethanol_progesterone_6h_expt_2_rep_1


title: PC645T

source_name: prostate cancer tissue


title: Patient L134 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L134_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L134 Diagnostic

value: Patient L134

value: AML


title: PC626T

value: prostate cancer tissue


title: TPK451

description: T47D_PRB_K388R_ethanol_ethanol_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with ethanol and ethanol (vehicle), for 6 hours

value: ethanol and ethanol


title: Patient L145 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L145_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L145 Remission

value: Patient L145

value: Bone Marrow

value: Remission


title: Patient L134 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L134_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L134 Remission


title: PC634T


title: Patient L132 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L132_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L132 Diagnostic

value: Patient L132

value: Diagnostic


title: Patient L133 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L133_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L133 Remission

value: Patient L133


title: Patient L133 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L133_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L133 Diagnostic


title: Patient L130 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L130_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L130 Diagnostic

value: Patient L130


title: Patient L132 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L132_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L132 Remission


title: Patient L129 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L129_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L129 Diagnostic

value: Patient L129


title: Patient L129 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L129_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L129 Remission


title: Patient L128 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L128_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L128 Diagnostic

value: Patient L128


title: TPK450

description: T47D_PRB_K388R_ethanol_ethanol_6h_expt_2_rep_2

value: Breast

value: 6 hr


title: Patient L128 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L128_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L128 Remission


title: PC621T

value: Caucasian


title: PC616T


title: PC629T


title: TPK447

description: T47D_PRB_wildtype_progesterone_aglepristone_6h_expt_2_rep_2

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, co-treated with progesterone and aglepristone for 6 hours

value: progesterone and aglepristone


title: Patient L126 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L126_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L126 Diagnostic

value: Patient L126


title: Patient L127 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L127_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L127 Diagnostic

value: Patient L127

value: AML


title: Patient L126 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L126_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L126 Remission


title: Patient L123 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L123_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L123 Diagnostic

value: Patient L123


title: Patient L123 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L123_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L123 Remission


title: PC625T

source_name: prostate cancer tissue

value: prostate cancer tissue


title: TPK449

description: T47D_PRB_K388R_ethanol_ethanol_6h_expt_2_rep_1

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-K388R, co-treated with ethanol and ethanol (vehicle), for 6 hours

value: ethanol and ethanol


title: TPK448

description: T47D_PRB_wildtype_progesterone_aglepristone_6h_expt_2_rep_3


title: Patient L122 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L122_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L122 Diagnostic

value: Patient L122

value: Bone Marrow


title: Patient L136 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L136_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L136 Remission

value: Patient L136

value: Remission


title: Patient L122 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L122_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L122 Remission


title: TPK443

description: T47D_PRB_wildtype_progesterone_onapristone_6h_expt_2_rep_1

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, co-treated with progesterone and onapristone for 6 hours

value: progesterone and onapristone


title: Patient L121 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L121_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L121 Diagnostic

value: Patient L121

value: Diagnostic


title: Patient L121 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L121_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L121 Remission


title: PC593T


title: PC594T


title: TPK445

description: T47D_PRB_wildtype_progesterone_onapristone_6h_expt_2_rep_3

value: Breast


title: TPK442

description: T47D_PRB_wildtype_progesterone_RU486_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, co-treated with progesterone and RU486 for 6 hours

value: progesterone and RU486

value: 6 hr


title: TPK444

description: T47D_PRB_wildtype_progesterone_onapristone_6h_expt_2_rep_2


title: PC582T

value: Caucasian


title: TPK446

description: T47D_PRB_wildtype_progesterone_aglepristone_6h_expt_2_rep_1

value: progesterone and aglepristone


title: Patient L117 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L117_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L117 Diagnostic

value: Patient L117


title: Patient L119 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L119_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L119 Diagnostic

value: Patient L119

value: AML


title: Patient L119 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L119_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L119 Remission


title: Patient L117 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L117_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L117 Remission


title: PC563T

value: prostate cancer tissue


title: PC579T


title: TPK440

description: T47D_PRB_wildtype_progesterone_RU486_6h_expt_2_rep_1


title: Patient L114 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L114_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L114 Diagnostic

value: Patient L114


title: PC551T


title: Patient L114 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L114_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L114 Remission


title: TPK439

description: T47D_PRB_wildtype_ethanol_aglepristone_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, co-treated with ethanol and aglepristone for 6 hours

value: ethanol and aglepristone


title: PC555T


title: Patient L112 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L112_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L112 Remission

value: Patient L112

value: Bone Marrow


title: Patient L112 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L112_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L112 Diagnostic


title: PC498T

source_name: prostate cancer tissue


title: PC540T


title: Patient L111 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L111_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L111 Diagnostic

value: Patient L111


title: TPK441

description: T47D_PRB_wildtype_progesterone_RU486_6h_expt_2_rep_2


title: Patient L113 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L113_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L113 Diagnostic

value: Patient L113


title: PC501T


title: Patient L111 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L111_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L111 Remission

value: Remission


title: Patient L110 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L110_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L110 Diagnostic

value: Patient L110

value: Diagnostic


title: Patient L108 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L108_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L108 Diagnostic

value: Patient L108


title: Patient L109 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L109_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L109 Remission

value: Patient L109


title: Patient L109 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L109_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L109 Diagnostic


title: Patient L107 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L107_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L107 Remission

value: Patient L107


title: Patient L108 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L108_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L108 Remission


title: PC494T

value: Caucasian


title: PC491T


title: TPK437

description: T47D_PRB_wildtype_ethanol_aglepristone_6h_expt_2_rep_1

value: Breast

value: 6 hr


title: TPK436

description: T47D_PRB_wildtype_ethanol_onapristone_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, co-treated with ethanol and onapristone for 6 hours

value: ethanol and onapristone


title: Patient L107 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L107_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L107 Diagnostic

value: AML


title: TPK434

description: T47D_PRB_wildtype_ethanol_onapristone_6h_expt_2_rep_1


title: Patient L105 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L105_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L105 Remission

value: Patient L105


title: PC482T

value: prostate cancer tissue


title: TPK433

description: T47D_PRB_wildtype_ethanol_RU486_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, co-treated with ethanol and RU486, for 6 hours

value: ethanol and RU486


title: Patient L105 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L105_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L105 Diagnostic

value: Bone Marrow


title: TPK432

description: T47D_PRB_wildtype_ethanol_RU486_6h_expt_2_rep_2


title: Patient L104 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L104_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L104 Diagnostic

value: Patient L104


title: TPK431

description: T47D_PRB_wildtype_ethanol_RU486_6h_expt_2_rep_1


title: TPK438

description: T47D_PRB_wildtype_ethanol_aglepristone_6h_expt_2_rep_2

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, co-treated with ethanol and aglepristone for 6 hours

value: ethanol and aglepristone


title: TPK435

description: T47D_PRB_wildtype_ethanol_onapristone_6h_expt_2_rep_2


title: Patient L102 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L102_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L102 Diagnostic

value: Patient L102


title: Patient L102 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L102_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L102 Remission

value: Remission


title: Patient L101 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L101_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L101 Remission

value: Patient L101


title: Patient L100 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L100_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L100 Remission

value: Patient L100


title: PC477T

source_name: prostate cancer tissue


title: TPK57

description: T47D_PRB_wildtype_R5020_NA_6h_expt_1_rep_5

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, treated with R5020 for 6 hours


title: Patient L098 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L098_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L098 Diagnostic

value: Patient L098

value: Diagnostic


title: PC470T

value: Caucasian


title: PC455T


title: TPK428

description: T47D_PRB_wildtype_ethanol_progesterone_6h_expt_2_rep_1

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, co-treated with ethanol and progesterone, for 6 hours

value: Breast

value: ethanol and progesterone


title: PC473T

value: Asian


title: Patient L100 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L100_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L100 Diagnostic

value: AML


title: TPK56

description: T47D_PRB_wildtype_R5020_NA_6h_expt_1_rep_4

value: 6 hr


title: Patient L098 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L098_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L098 Remission


title: PC457T

value: prostate cancer tissue


title: PC474T


title: Patient L099 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L099_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L099 Diagnostic

value: Patient L099


title: Patient L104 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L104_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L104 Remission

value: Bone Marrow


title: TPK430

description: T47D_PRB_wildtype_ethanol_progesterone_6h_expt_2_rep_3


title: TPK55

description: T47D_PRB_wildtype_ethanol_NA_6h_expt_1_rep_5

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, treated with ethanol (vehicle), for 6 hours

value: ethanol


title: PC423T


title: Patient L101 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L101_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L101 Diagnostic


title: TPK429

description: T47D_PRB_wildtype_ethanol_progesterone_6h_expt_2_rep_2


title: PC599T


title: Patient L097 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L097_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L097 Diagnostic

value: Patient L097


title: Patient L096 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L096_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L096 Diagnostic

value: Patient L096


title: TPK54

description: T47D_PRB_wildtype_ethanol_NA_6h_expt_1_rep_4


title: Patient L095 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L095_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L095 Diagnostic

value: Patient L095


title: PC453T


title: Patient L095 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L095_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L095 Remission

value: Remission


title: PC430T


title: PC480T


title: Patient L094 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L094_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L094 Diagnostic

value: Patient L094


title: Patient L093 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L093_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L093 Diagnostic

value: Patient L093


title: Patient L094 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L094_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L094 Remission


title: Patient L092 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L092_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L092 Remission

value: Patient L092


title: Patient L096 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L096_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L096 Remission


title: Patient L092 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L092_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L092 Diagnostic

value: Diagnostic


title: PC375T

source_name: prostate cancer tissue

value: Caucasian


title: PC343T


title: PC362T


title: TPK427

description: T47D_PRB_wildtype_ethanol_ethanol_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing pIRESneo3-PRB-wildtype, co-treated with ethanol and ethanol (vehicle), for 6 hours

value: Breast

value: ethanol and ethanol


title: Patient L090 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L090_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L090 Diagnostic

value: Patient L090

value: AML


title: Patient L090 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L090_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L090 Remission


title: Patient L093 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L093_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L093 Remission


title: Patient L087 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L087_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L087 Diagnostic

value: Patient L087


title: Patient L085 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L085_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L085 Remission

value: Patient L085


title: Patient L085 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L085_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L085 Diagnostic

value: Bone Marrow


title: Patient L084 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L084_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L084 Diagnostic

value: Patient L084


title: TPK426

description: T47D_PRB_wildtype_ethanol_ethanol_6h_expt_2_rep_2

value: 6 hr


title: PC274T

value: prostate cancer tissue


title: TPK425

description: T47D_PRB_wildtype_ethanol_ethanol_6h_expt_2_rep_1


title: TPK424

description: T47D_PR_null_progesterone_aglepristone_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing empty pIRESneo3 plasmid, co-treated with progesterone and aglepristone for 6 hours

value: progesterone and aglepristone


title: Patient L084 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L084_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L084 Remission

value: Remission


title: TPK423

description: T47D_PR_null_progesterone_aglepristone_6h_expt_2_rep_2


title: Patient L083 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L083_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L083 Diagnostic

value: Patient L083


title: TPK422

description: T47D_PR_null_progesterone_aglepristone_6h_expt_2_rep_1


title: Patient L083 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L083_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L083 Remission


title: TPK421

description: T47D_PR_null_progesterone_onapristone_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing empty pIRESneo3 plasmid, co-treated with progesterone and onapristone for 6 hours

value: progesterone and onapristone


title: Patient L081 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L081_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L081 Diagnostic

value: Patient L081


title: PC185T


title: Patient L081 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L081_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L081 Remission


title: Patient L080 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L080_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L080 Remission

value: Patient L080


title: Patient L079 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L079_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L079 Diagnostic

value: Patient L079

value: Diagnostic


title: TPK420

description: T47D_PR_null_progesterone_onapristone_6h_expt_2_rep_2

value: Breast


title: Patient L080 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L080_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L080 Diagnostic


title: Patient L078 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L078_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L078 Diagnostic

value: Patient L078


title: Patient L077 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L077_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L077 Diagnostic

value: Patient L077

value: AML


title: TPK419

description: T47D_PR_null_progesterone_onapristone_6h_expt_2_rep_1


title: Patient L079 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L079_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L079 Remission


title: Patient L077 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L077_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L077 Remission


title: Patient L076 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L076_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L076 Diagnostic

value: Patient L076


title: PC188T

source_name: prostate cancer tissue

value: Caucasian


title: TPK415

description: T47D_PR_null_ethanol_aglepristone_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing empty pIRESneo3 plasmid, co-treated with ethanol and aglepristone for 6 hours

value: ethanol and aglepristone


title: TPK417

description: T47D_PR_null_progesterone_RU486_6h_expt_2_rep_2

source_name: T47D-Y cells stably expressing empty pIRESneo3 plasmid, co-treated with progesterone and RU486 for 6 hours

value: progesterone and RU486

value: 6 hr


title: TPK418

description: T47D_PR_null_progesterone_RU486_6h_expt_2_rep_3


title: PC15T

value: prostate cancer tissue


title: TPK416

description: T47D_PR_null_progesterone_RU486_6h_expt_2_rep_1


title: PC248T


title: TPK414

description: T47D_PR_null_ethanol_aglepristone_6h_expt_2_rep_2


title: PC45T


title: Patient L075 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L075_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L075 Diagnostic

value: Patient L075

value: Bone Marrow


title: Patient L076 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L076_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L076 Remission

value: Remission


title: PC84T


title: PC21T


title: PC99T

value: Hispanic


title: Patient L075 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L075_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L075 Remission


title: Patient L074 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L074_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L074 Diagnostic

value: Patient L074


title: Patient L071 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L071_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L071 Remission

value: Patient L071


title: PC184T


title: TPK413

description: T47D_PR_null_ethanol_aglepristone_6h_expt_2_rep_1


title: Patient L071 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L071_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L071 Diagnostic

value: Diagnostic


title: PC636T


title: Patient L070 Remission

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L070_N
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L070 Remission

value: Patient L070


title: Patient L070 Diagnostic

description:
COG_LUM_AML_Batch_A_Processed_data.txt
COG_LUM_AML_Batch_A_Raw_Intensities.txt
matrix column prefix: L070_T
hybridized to Illumina Human Omni 2.5M SNP array
HumanOmni2.5-4v1-D

source_name: Patient L070 Diagnostic


title: TPK412

description: T47D_PR_null_ethanol_onapristone_6h_expt_2_rep_3

source_name: T47D-Y cells stably expressing empty pIRESneo3 plasmid, co-treated with ethanol and onapristone for 6 hours

value: Breast

value: ethanol and onapristone