title: BCFD9

source_name: genomic DNA from breast sample BCFD9

value: bi-sulphite converted genomic DNA from BCFD9


title: BCFD5

status: Public on Jun 18 2015

type: genomic

city: London

first: Andrew

middle: E

last: Teschendorff

address: 72 Huntley Street

department: UCL Cancer Institute/Institute for Women's Health

country: United Kingdom

institute: University College London

description:
Normal breast, normal-adjacent and breast cancer tissue samples
***WARNING: incomplete metadata supplied for this study***

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting

data_processing: idat files processed using minfi V1.8.9 and BMIQ v1.4

label: Cy5 and Cy3

molecule: genomic DNA

organism: Homo sapiens

source_name: genomic DNA from breast sample BCFD5

label_protocol: Standard Illumina Protocol for Infinium 450k Chip

extract_protocol: genomic DNA was extracted and purified from samples using Qiagen DNeasy Kit according to standard instructions

tag: molecule subtype

value: bi-sulphite converted genomic DNA from BCFD5

tag: status(0=normal 1=normal-adjacent 2=breast cancer 3=normal-brca1 4=cancer-brca1)

tag: ChIP

tag: er

tag: pr

tag: sentrix id


title: TRIB-172

status: Public on Dec 01 2014

type: RNA

city: Sao Paulo

first: Karina

middle: Lumi

last: Mine

address: Rua Loefgreen, 1235

department: Instituto de Imunogenetica

country: Brazil

institute: AFIP

description: preimplantation kidney biopsy from deceased donor 172

hyb_protocol: cDNA was added to the hybridization cocktail and hybridized to the array for 16 hours at 45°C using Hybrization oven 640 (Affymetrix).

scan_protocol: After the incubation the arrays were washed using the Affymetrix Fluidics Station 450 and images were acquired using the GeneChip Scanner 3000 (both from Affymetrix).

data_processing: The data analyses were performed using BRB-ArrayTools version 4.2.1 developed by Dr. Richard Simon and BRB-ArrayTools Development Team (http://linus.nci.nih.gov/BRB-ArrayTools.html). We applied the Robust Multiarray Analysis (RMA) algorithm for data summarization and background correction, and quantile normalization.

label: biotin

molecule: total RNA

source_name: preimplantation kidney biopsy

label_protocol: Briefly, 200 ng of total RNA underwent first- and second-strand cDNA synthesis. Complementary RNA was generated and used to produce sense-strand cDNA. All these steps were performed using The Ambion® WT Expression kit (Life Technologies), following manufacturer’s instructions. 5.5 ug of single-stranded cDNA samples were fragmented and end-labeled with the GeneChip® WT Terminal Labeling and Hybridization Kit (Affymetrix).

extract_protocol: Biopsy fragments were homogenized (Multipro; Dremel, Racine, WI) before total RNA extraction with RNeasy Minikit® (QIAGEN, Valencia, CA), according to manufacturer’s instructions.

tag: donor

tag: tissue type

value: preimplantation kidney biopsy

tag: dgf occurrence

value: DGF

tag: dgf lasting more than 14 days

value: yes

tag: egfr

value: High


title: BCFD10

source_name: genomic DNA from breast sample BCFD10

value: bi-sulphite converted genomic DNA from BCFD10


title: BCFD12

source_name: genomic DNA from breast sample BCFD12

value: bi-sulphite converted genomic DNA from BCFD12


title: TRIB-37

description: preimplantation kidney biopsy from deceased donor 37

value: without DGF

value: Low


title: TRIB-338

description: preimplantation kidney biopsy from deceased donor 338


title: TRIB-36

description: preimplantation kidney biopsy from deceased donor 36

value: no


title: BCFD13

source_name: genomic DNA from breast sample BCFD13

value: bi-sulphite converted genomic DNA from BCFD13


title: BCFD2

source_name: genomic DNA from breast sample BCFD2

value: bi-sulphite converted genomic DNA from BCFD2


title: TRIB-335

description: preimplantation kidney biopsy from deceased donor 335


title: TRIB-56

description: preimplantation kidney biopsy from deceased donor 56


title: BCFD3

source_name: genomic DNA from breast sample BCFD3

value: bi-sulphite converted genomic DNA from BCFD3


title: TRIB-318

description: preimplantation kidney biopsy from deceased donor 318


title: TRIB-309

description: preimplantation kidney biopsy from deceased donor 309


title: TRIB-276

description: preimplantation kidney biopsy from deceased donor 276


title: BCFD18

source_name: genomic DNA from breast sample BCFD18

value: bi-sulphite converted genomic DNA from BCFD18


title: BCFD49

source_name: genomic DNA from breast sample BCFD49

value: bi-sulphite converted genomic DNA from BCFD49


title: TRIB-275

description: preimplantation kidney biopsy from deceased donor 275


title: TRIB-277

description: preimplantation kidney biopsy from deceased donor 277


title: TRIB-184

description: preimplantation kidney biopsy from deceased donor 184


title: TRIB-28

description: preimplantation kidney biopsy from deceased donor 28


title: TRIB-22

description: preimplantation kidney biopsy from deceased donor 22


title: TRIB-271

description: preimplantation kidney biopsy from deceased donor 271


title: TRIB-17

description: preimplantation kidney biopsy from deceased donor 17


title: BCFD1

description:
Normal breast, normal-adjacent and breast cancer tissue samples
***WARNING: incomplete metadata supplied for this study***

source_name: genomic DNA from breast sample BCFD1

value: bi-sulphite converted genomic DNA from BCFD1


title: TRIB-72

description: preimplantation kidney biopsy from deceased donor 72


title: TRIB-15

description: preimplantation kidney biopsy from deceased donor 15


title: TRIB-32

description: preimplantation kidney biopsy from deceased donor 32


title: TRIB-174

description: preimplantation kidney biopsy from deceased donor 174


title: TRIB-319

description: preimplantation kidney biopsy from deceased donor 319


title: TRIB-323

description: preimplantation kidney biopsy from deceased donor 323


title: TRIB-317

description: preimplantation kidney biopsy from deceased donor 317


title: TRIB-300

description: preimplantation kidney biopsy from deceased donor 300


title: BCFD44

source_name: genomic DNA from breast sample BCFD44

value: bi-sulphite converted genomic DNA from BCFD44


title: TRIB-8

description: preimplantation kidney biopsy from deceased donor 8


title: TRIB-6

description: preimplantation kidney biopsy from deceased donor 6


title: TRIB-339

description: preimplantation kidney biopsy from deceased donor 339


title: BCFD27

source_name: genomic DNA from breast sample BCFD27

value: bi-sulphite converted genomic DNA from BCFD27


title: TRIB-26

description: preimplantation kidney biopsy from deceased donor 26

value: preimplantation kidney biopsy


title: TRIB-272

description: preimplantation kidney biopsy from deceased donor 272


title: TRIB-21

description: preimplantation kidney biopsy from deceased donor 21

value: DGF


title: TRIB-269

description: preimplantation kidney biopsy from deceased donor 269


title: TRIB-245

description: preimplantation kidney biopsy from deceased donor 245


title: TRIB-175

description: preimplantation kidney biopsy from deceased donor 175


title: TRIB-177

description: preimplantation kidney biopsy from deceased donor 177


title: TRIB-170

description: preimplantation kidney biopsy from deceased donor 170

value: yes


title: TRIB-16

description: preimplantation kidney biopsy from deceased donor 16

value: High


title: TRIB-13

description: preimplantation kidney biopsy from deceased donor 13


title: TRIB-136

description: preimplantation kidney biopsy from deceased donor 136


title: TRIB-12

description: preimplantation kidney biopsy from deceased donor 12


title: TRIB-7

description: preimplantation kidney biopsy from deceased donor 7


title: TRIB-299

description: preimplantation kidney biopsy from deceased donor 299


title: TRIB-2

description: preimplantation kidney biopsy from deceased donor 2


title: TRIB-14

description: preimplantation kidney biopsy from deceased donor 14


title: TRIB-11

description: preimplantation kidney biopsy from deceased donor 11


title: TRIB-132

description: preimplantation kidney biopsy from deceased donor 132


title: SAMPLE_106_Adult_expression

status: Public on Sep 18 2014

city: Tartu

first: Lili

last: Milani

address: Riia 23b

country: Estonia

institute: Estonian Genome Center, University of Tartu

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: Probes with detectable expression (detection p-value < 0.05) in < 10% of the samples were discarded. Next, the expression data was log2 transformed and normalized using quantile normalization with package lumi in R. The sequences of the expression probes were mapped to the human genome reference (build hg19). The expression probes which mapped uniquely to the reference genome and corresponding transcripts with at least 90% identity were retained. All expression probes mapping to either the X or Y chromosomes were discarded.

source_name: Liver

label_protocol: Biotinylated cRNA were prepared with theTargetAmp™-Nano Labeling Kit for Illumina® Expression BeadChip (Epicentre, Chicago, Illinois, USA).

extract_protocol: RNA was extracted and purified using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany), according to the standard protocol. Quality control was performed with Agilent Bioanalyser.

tag: tissue

value: Liver

tag: group

value: Cancer

tag: agegroup

value: Adult

tag: Sex

value: Female

tag: slide

tag: array

value: B


title: SAMPLE_104_Adult_expression

value: I


title: SAMPLE_110_Adult_expression

value: Male

value: J


title: SAMPLE_102_Adult_expression


title: SAMPLE_100_Adult_expression


title: SAMPLE_107_Adult_expression


title: SAMPLE_101_Adult_expression


title: SAMPLE_98_Adult_expression

value: L


title: SAMPLE_103_Adult_expression


title: SAMPLE_109_Adult_expression


title: SAMPLE_108_Adult_expression


title: SAMPLE_105_Adult_expression


title: SAMPLE_95_Adult_expression


title: SAMPLE_99_Adult_expression

value: H


title: SAMPLE_91_Adult_expression


title: SAMPLE_97_Adult_expression

value: K


title: TRIB-270

description: preimplantation kidney biopsy from deceased donor 270

value: without DGF


title: SAMPLE_93_Adult_expression


title: SAMPLE_94_Adult_expression

value: D


title: SAMPLE_89_Adult_expression


title: SAMPLE_88_Adult_expression


title: SAMPLE_90_Adult_expression


title: BCFD8

description:
Normal breast, normal-adjacent and breast cancer tissue samples
***WARNING: incomplete metadata supplied for this study***

source_name: genomic DNA from breast sample BCFD8

tag: molecule subtype

value: bi-sulphite converted genomic DNA from BCFD8


title: SAMPLE_96_Adult_expression


title: SAMPLE_86_Adult_expression


title: SAMPLE_85_Adult_expression


title: SAMPLE_87_Adult_expression


title: SAMPLE_82_Adult_expression


title: SAMPLE_81_Adult_expression


title: SAMPLE_80_Adult_expression


title: SAMPLE_78_Adult_expression


title: SAMPLE_79_Adult_expression


title: SAMPLE_77_Adult_expression


title: SAMPLE_83_Adult_expression


title: TRIB-295

description: preimplantation kidney biopsy from deceased donor 295

value: preimplantation kidney biopsy

value: DGF

value: no


title: SAMPLE_72_Adult_expression

value: Liver


title: SAMPLE_71_Adult_expression

value: Cancer


title: SAMPLE_84_Adult_expression

value: Adult

value: A


title: SAMPLE_75_Adult_expression

value: B


title: SAMPLE_76_Adult_expression


title: SAMPLE_66_Adult_expression

value: Accident

value: E


title: SAMPLE_70_Adult_expression

value: Female


title: SAMPLE_64_Adult_expression

value: Male


title: SAMPLE_61_Adult_expression


title: SAMPLE_68_Adult_expression

value: I


title: SAMPLE_67_Adult_expression

value: K


title: SAMPLE_63_Adult_expression

value: F


title: SAMPLE_69_Adult_expression


title: SAMPLE_65_Adult_expression

value: H


title: SAMPLE_58_Adult_expression


title: SAMPLE_60_Adult_expression

value: G


title: TRIB-320

description: preimplantation kidney biopsy from deceased donor 320

value: preimplantation kidney biopsy

value: without DGF

value: High


title: SAMPLE_59_Adult_expression

value: Liver


title: TRIB-322

description: preimplantation kidney biopsy from deceased donor 322

value: Low


title: SAMPLE_57_Adult_expression

value: Adult

value: C


title: SAMPLE_55_Adult_expression


title: SAMPLE_53_Adult_expression


title: SAMPLE_46_Adult_expression

value: A


title: SAMPLE_92_Adult_expression

value: Cancer

value: L


title: SAMPLE_54_Adult_expression

value: Accident

value: Female

value: D


title: SAMPLE_51_Adult_expression


title: SAMPLE_49_Adult_expression

value: Male


title: SAMPLE_47_Adult_expression

value: E


title: SAMPLE_50_Adult_expression


title: SAMPLE_56_Adult_expression


title: SAMPLE_44_Adult_expression

value: H


title: SAMPLE_45_Adult_expression

value: K


title: SAMPLE_42_Adult_expression


title: SAMPLE_41_Adult_expression


title: SAMPLE_39_Adult_expression


title: SAMPLE_40_Adult_expression


title: SAMPLE_37_Adult_expression


title: SAMPLE_38_Adult_expression


title: SAMPLE_48_Adult_expression

value: G


title: SAMPLE_35_Adult_expression

value: F


title: SAMPLE_34_Adult_expression


title: SAMPLE_32_Adult_expression


title: SAMPLE_52_Adult_expression


title: SAMPLE_33_Adult_expression


title: SAMPLE_43_Adult_expression


title: SAMPLE_31_Adult_expression


title: SAMPLE_29_Adult_expression


title: SAMPLE_30_Adult_expression


title: SAMPLE_28_Adult_expression


title: SAMPLE_25_Adult_expression


title: SAMPLE_26_Adult_expression


title: SAMPLE_22_Adult_expression


title: SAMPLE_21_Adult_expression


title: SAMPLE_27_Adult_expression

value: I


title: SAMPLE_18_Adult_expression

value: Liver


title: SAMPLE_23_Adult_expression


title: SAMPLE_16_Adult_expression


title: SAMPLE_17_Adult_expression


title: SAMPLE_19_Adult_expression


title: SAMPLE_15_Adult_expression


title: SAMPLE_24_Adult_expression


title: A7-LungMet

status: Public on Jun 20 2011

city: Chapel Hill

first: Charles

middle: M.

last: Perou

state: NC

address: 12-044 Lineberger Comprehensive Cancer Center CB# 7295

department: Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center

country: USA

institute: University of North Carolina at Chapel Hill

description:
A7 Lung Met
lung metastasis

scan_protocol: Fluorescent array images were collected for both Cy3 and Cy5 with a GenePix 4000B fluorescent scanner and image intensity data were extracted and analyzed with GenePix Pro 5.1 analysis software.

data_processing: Data for both channels were Lowess-normalized and then log(2) ratio was taken

source_name: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-529

extract_protocol: Total RNA isolated by Stratagene

tag: reference

value: Human Reference B

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-125

extract_protocol: Total RNA using Qiagen Rneasy Kit

tag: tumor

value: lung metastasis


title: A11-3  LungMet

description:
A11 Lung Met
lung metastasis

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-533

source_name: A11-3 LungMet


title: SAMPLE_20_Adult_expression

value: Adult


title: A1-17-Left-Primary-VIM-Int-Custom

description:
A1 Tumor
breast tumor

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-500

value: breast tumor


title: E12.5 mouse liver cells

status: Public on Feb 04 2013

city: Los Angeles

first: Kinji

last: Asahina

state: CA

address: 1333 San Pablo Street

department: Pathology

institute: University of Southern California

description:
Gene expression data from embryos younger than nuclear cycle 9, i.e. before zygotic genome activation.
Liver

hyb_protocol: Following fragmentation, 3.75 ug of cRNA were hybridized for 16 hr at 45C on Mouse Genome 430 2.0 Array in the GeneChip Hybridization Oven 640. Chips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Affymerix GeneArray® Scanner.

data_processing: We analyzed the data by RMA algorithm using Partek Genomics Suite Software.

organism: Mus musculus

source_name: E12.5 mouse liver cells

label_protocol: Biotinylated probes were synthesized from 20 ng total RNA using the Ovation RNA amplification system V2 and FL-Ovation cDNA Biotin module V2 (Nugen).

extract_protocol: Total RNA was extracted with RNAqueous Micro (Ambion).

tag: genotype

value: wild type

tag: strain

tag: age

value: E12.5 embryo


title: Current Smoker, Sample 99

status: Public on Oct 02 2007

city: Boston

first: Avrum

last: Spira

state: MA

address: 715 Albany Street, R304

department: Pulmonary and Critical Care Medicine

institute: Boston University Medical Center

description: RNA isolated from Bronchial Epithelial cells obtained from the large airway during time of bronchosocpy

hyb_protocol: Affymetrix Suggest Protocol

scan_protocol: Affymetrix Suggest Protocol

data_processing: GCRMA generated expression value

label: Biotin

source_name: Bronchial Epithelium

label_protocol: Affymetrix Suggest Protocol

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

tag: Current Smoker

tag: Age:39 Packyears:9.2


title: A1-01-Right-Lung

status: Public on Nov 23 2005

description:
A1 Lung Met
Intrinsic pair:pair 4. Single Sample Predictor Subtype: Basal-like

hyb_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

scan_protocol: Fluorescent array images were collected for both Cy3 and Cy5 with a GenePix 4000B fluorescent scanner and image intensity data were extracted and analyzed with GenePix Pro 4.1 analysis software.

extract_protocol: Total RNA isolated by Stratagene.

value: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

source_name: Autopsy patient #1 lung metastasis from breast

extract_protocol: Qiagen Rneasy Kit

tag: er  (1=positive; 0=negative)

tag: pgr  (1=positive; 0=negative)

tag: her2 clinical status ihc/fish (1=positive; 0=negative)

tag: node status (1=positive=1 or more nodes+; 0=negative)

tag: grade

tag: size (1= <=2cm; 2= >2cm to <=5cm; 3=>5cm; 4=any size with direct extension to chest wall or skin)

tag: rfs event (0=no relapse, 1=relapsed at any site or died of disease)

tag: rfs months

tag: overall survival event (0=alive, 1=dod or doc)

tag: overall suvival months

tag: pam50 predictions plus claudin-low classification (cell line predictor)

value: Basal

tag: dscores unc337


title: 9819-020204B

status: Public on Aug 20 2007

description:
A7 Tumor
Age: 58; ER status: negative; Node status: positive; Grade: ; Size: >5cm; RFS event: relapsed or DOD; RFS months: 17; OS Event:DOD or DOC; OS months: 25; Singe Sample Predictor Subtype: Basal-like; Treatment: AC_T; Overall Response: SD; pCR: no

source_name: Human Reference B

label_protocol: described in Hu et al., 2005, BioTechniques, 38:121-124

extract_protocol: Total RNA isolated by stratagene

tag: Stratagene Human Universal Reference that contained 1/10 added MCF7 and ME16C RNAs

tag: Breast Tumor


title: Nimblegen 385K pig array CGH (sample 11, replicate 1)

status: Public on Mar 19 2009

city: Tjele

first: Jakob

last: Hedegaard

address: PO-box 50

department: Department of Genetics and Biotechnology

country: Denmark

institute: Aarhus University, Faculty of Agricultural Sciences

description: Detailed descriptions of the above protocols are available in the manufacter´s website.

hyb_protocol: DNA hybridization was implemented according to the manufacturer’s protocol. Briefly, after the fragmenting by sonification and labelling the test boar A was hybridized against the reference R with a MAUI hybridization system (BioMicro Systems).

scan_protocol: Scanning and intensity feature extraction were implemented according to the manufacturer’s protocol. Briefly, the array was scanned at 5-micrometer resolution using the GenePix4000B scanner (Axon Instruments, Molecular Devices Corp., Sunnyvale, CA). Data was extracted from scanned images using NimbleScan 2.0 extraction software (NimbleGen Systems, Inc.), which allows for automated grid alignment, extraction, and generation of data files.

data_processing: Loess Normalization with the default parameters (except 'iterations'=10) as implemented in the Limma bioconductor package.

organism: Sus scrofa

source_name: Boar M, replicate 1

label_protocol: DNA labelling was implemented according to the manufacturer’s protocol. Briefly, the DNA was labeled with Cy3 labeled 9mer primers.

extract_protocol:
Genomic DNA was isolated from lung/liver tissue by the use of Genomic-tip 100/G. Genomic DNA Buffer Set and Genomic DNA Handbook from Qiagen. The precipitation was performed by adding 2.3xvolumes of cold 96% ethanol and 0.1xvolumes of 3M sodium acetate (pH 4.8). After 20 minutes of centrifugation at 4ºC and 13.000 rpm, the precipitated DNA was washed with 70% ethanol, re-precipitated by 5 minutes of centrifugation at 4ºC and 13.000 rpm and resuspended in 1xTE-buffer to a concentration of ~250 ng/μL. After precipitation, the isolated DNA was
resuspended in 1xTE-buffer to a concentration of ~ 250 ng/μL. After precipitation, the isolated DNA was resuspended in 1 mL of 1xTE-buffer (10 mM Tris-HCl, 1 mM EDTA; pH 8).

tag: Genomic DNA from blood of a male Duroc pig, here called boar M

source_name: Reference boar R

label_protocol: DNA labelling was implemented according to the manufacturer’s protocol. Briefly, the DNA was labeled with Cy5 labeled 9mer primers.

tag: Genomic DNA from lung/liver tissue of a male Hampshire pig, here called boar R


title: Nimblegen 385K pig array CGH (sample 10, replicate 1)

source_name: Boar H, replicate 1

tag: Genomic DNA from blood of a male Duroc pig, here called boar H


title: Nimblegen 385K pig array CGH (sample 7, replicate 2)

source_name: Boar J, replicate 2

tag: Genomic DNA from blood of a male Duroc pig, here called boar J


title: Nimblegen 385K pig array CGH (sample 7, replicate 1)

source_name: Boar J, replicate 1


title: Nimblegen 385K pig array CGH (sample 9, replicate 1)

source_name: Boar L, replicate 1

tag: Genomic DNA from blood of a male Duroc pig, here called boar L


title: Nimblegen 385K pig array CGH (sample 9, replicate 2)

source_name: Boar L, replicate 2


title: Nimblegen 385K pig array CGH (sample 10, replicate 2)

source_name: Boar H, replicate 2


title: Nimblegen 385K pig array CGH (sample 8, replicate 2)

source_name: Boar K, replicate 2

tag: Genomic DNA from blood of a male Duroc pig, here called boar K


title: Nimblegen 385K pig array CGH (sample 12, replicate 2)

source_name: Boar N, replicate 2

tag: Genomic DNA from lung/liver tissue of a male Duroc pig, here called boar N


title: Nimblegen 385K pig array CGH (sample 1, replicate 2)

source_name: Boar A, replicate 2

tag: Genomic DNA from blood of a male Duroc pig, here called boar A


title: Nimblegen 385K pig array CGH (sample 12, replicate 1)

source_name: Boar N, replicate 1


title: Nimblegen 385K pig array CGH (sample 8, replicate 1)

source_name: Boar K, replicate 1


title: Nimblegen 385K pig array CGH (sample 6, replicate 2)

source_name: Boar G, replicate 2

tag: Genomic DNA from blood of a male Duroc pig, here called boar G


title: Nimblegen 385K pig array CGH (sample 11, replicate 2)

source_name: Boar M, replicate 2


title: Nimblegen 385K pig array CGH (sample 4, replicate 1)

source_name: Boar D, replicate 1

tag: Genomic DNA from blood of a male Duroc pig, here called boar D


title: Nimblegen 385K pig array CGH (sample 5, replicate 2)

source_name: Boar E, replicate 2

tag: Genomic DNA from blood of a male Duroc pig, here called boar E


title: Nimblegen 385K pig array CGH (sample 3, replicate 1)

source_name: Boar C, replicate 1

tag: Genomic DNA from blood of a male Duroc pig, here called boar C


title: Nimblegen 385K pig array CGH (sample 2, replicate 2)

source_name: Boar B, replicate 2

tag: Genomic DNA from blood of a male Duroc pig, here called boar B

source_name: Reference boar R


title: Nimblegen 385K pig array CGH (sample 3, replicate 2)

source_name: Boar C, replicate 2


title: Nimblegen 385K pig array CGH (sample 6, replicate 1)

source_name: Boar G, replicate 1


title: Nimblegen 385K pig array CGH (sample 5, replicate 1)

source_name: Boar E, replicate 1


title: Nimblegen 385K pig array CGH (sample 1, replicate 1)

source_name: Boar A, replicate 1


title: Nimblegen 385K pig array CGH (sample 4, replicate 2)

source_name: Boar D, replicate 2


title: Nimblegen 385K pig array CGH (sample 2, replicate 1)

source_name: Boar B, replicate 1