title: sample_198194-CP-saliva


title: sample_200128-CP-saliva

status: Public on Nov 23 2017

type: genomic

city: Toronto

first: Stephen

middle: W

last: Scherer

state: Ontario

address: 686 Bay Street

department: Genetics and Genomic Biology

country: Canada

institute: The Hospital for Sick Children

hyb_protocol: DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to the array at 50C for 17 hours according to the manufacturer's instructions.

scan_protocol: The array was washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.

data_processing:
To achieve comprehensive CNV calling, we used four separate algorithms to detect CNVs; Affymetrix Chromosome Analysis Suite (ChAS), iPattern, Nexus and Partek.
primary data description: Genotype Call (SNP call): AA, AB, BB, and NoCall

label: biotin

molecule: genomic DNA

organism: Homo sapiens

source_name: Mother

label_protocol: As per manufacturer (Affymetrix)

extract_protocol: Oragene saliva kits were heated o/n (5pm - 9am) at 50C in an air oven. OG500 saliva kits collected from adults were extracted using Puregene chemistry on an AutopureLS automated DNA extractor. Saliva lysates were RNase a treated prior to extracting using either a 5.0ml or 2.5ml lysate protocol depending on collected saliva volume. OG575 saliva kits collected from children were extracted manually using same Puregene chemistry and RNase A treatment. Pelleted DNA was rehydrated in TE overnight and quantitated next day using Hoescht dye and FLX800 Flurometer.

tag: gender

value: Female

tag: tissue

value: saliva


title: sample_198193-CP-saliva

source_name: Father

value: Male


title: sample_200127-CP-saliva

source_name: Child


title: sample_198195-CP-saliva


title: sample_234280-CP-saliva


title: sample_234277-CP-saliva


title: sample_216072-CP-saliva


title: sample_234284-CP-saliva


title: sample_234271-CP-saliva


title: sample_234261-CP-saliva


title: sample_234281-CP-saliva


title: sample_234274-CP-saliva


title: sample_200129-CP-saliva


title: sample_234267-CP-saliva


title: sample_239837-CP-saliva


title: sample_205095-CP-saliva


title: sample_234268-CP-saliva


title: sample_239836-CP-saliva


title: sample_239838-CP-saliva


title: sample_234266-CP-saliva


title: sample_234260-CP-saliva


title: sample_238883-CP-saliva


title: sample_234970-CP-saliva


title: sample_238885-CP-saliva


title: sample_238886-CP-saliva


title: sample_259862-CP-saliva


title: sample_234969-CP-saliva


title: sample_234968-CP-saliva


title: sample_259868-CP-saliva


title: sample_222551-CP-saliva


title: sample_259864-CP-saliva


title: sample_255957-CP-saliva


title: sample_256453-CP-saliva


title: sample_256451-CP-saliva


title: sample_222555-CP-saliva


title: sample_222569-CP-saliva


title: sample_256448-CP-saliva


title: sample_256452-CP-saliva


title: sample_222552-CP-saliva


title: sample_234263-CP-saliva


title: sample_256450-CP-saliva


title: sample_222561-CP-saliva


title: sample_222565-CP-saliva


title: sample_247944-CP-saliva


title: sample_247943-CP-saliva


title: sample_222699-CP-saliva


title: sample_238891-CP-saliva


title: sample_247948-CP-saliva


title: sample_247946-CP-saliva


title: sample_238890-CP-saliva


title: sample_222697-CP-saliva


title: sample_242601-CP-saliva


title: sample_242599-CP-saliva


title: sample_242600-CP-saliva


title: sample_222571-CP-saliva


title: sample_222556-CP-saliva


title: sample_222553-CP-saliva


title: sample_222557-CP-saliva


title: sample_222564-CP-saliva


title: sample_228159-CP-saliva


title: sample_222703-CP-saliva


title: sample_246155-CP-saliva


title: sample_228160-CP-saliva


title: sample_246152-CP-saliva


title: sample_256454-CP-saliva


title: sample_222709-CP-saliva


title: sample_222710-CP-saliva


title: sample_219593-CP-saliva


title: sample_219594-CP-saliva


title: sample_244121-CP-saliva


title: sample_244119-CP-saliva


title: sample_214273-CP-saliva


title: sample_214274-CP-saliva


title: sample_222568-CP-saliva


title: sample_214271-CP-saliva


title: sample_222562-CP-saliva


title: sample_246157-CP-saliva


title: sample_214267-CP-saliva


title: sample_214279-CP-saliva


title: sample_214247-CP-saliva


title: sample_219591-CP-saliva


title: sample_219590-CP-saliva


title: sample_214281-CP-saliva


title: sample_219592-CP-saliva


title: sample_214284-CP-saliva


title: sample_214282-CP-saliva


title: sample_214283-CP-saliva


title: sample_208367-CP-saliva


title: sample_208368-CP-saliva


title: sample_208365-CP-saliva


title: sample_217743-CP-saliva


title: sample_217737-CP-saliva


title: sample_219373-CP-saliva


title: sample_219374-CP-saliva


title: sample_214280-CP-saliva


title: sample_208363-CP-saliva


title: sample_208362-CP-saliva


title: sample_208360-CP-saliva


title: sample_217739-CP-saliva


title: sample_208364-CP-saliva


title: sample_214246-CP-saliva


title: sample_214244-CP-saliva


title: sample_219375-CP-saliva


title: sample_208348-CP-saliva


title: sample_208371-CP-saliva


title: sample_208361-CP-saliva


title: Lung_WT-inLPS_rep1

status: Public on Nov 22 2017

type: RNA

city: Nashville

first: Timothy

middle: S.

last: Blackwell

state: TN

department: Department of Cancer Biology

country: USA

institute: Vanderbilt University

description:
WT mice on dox for 1 week 48 hours after intratracheal LPS administration
WT-LPS_85

hyb_protocol: RNA quality control, hybridization to the Affymetrix Mouse Gene 1.0 ST array, and array scanning were performed by the Vanderbilt VANTAGE Core.

data_processing: The Robust Multichip Average method (30) implemented in R package “oligo” (v1.28.3) (31) was employed to normalize imported raw data. Probe sets interrogating control, unmapped, or intron sequences were ignored, leaving 79% of probe sets for a differential expression analysis. Linear models and empirical Bayes methods implemented in R package “limma” (v3.20.8) (32) were applied to estimate log fold changes and p-values for the p52-vs-WT effect.  Since samples with and without LPS stimulation were processed and microarray profiled at the same time, we assumed the random data variations were similar across all samples and built a linear model across the eight samples accounting for both p52 and LPS experimental factors (33).  The coefficient (estimated log fold change) and p-value associated with the p52 factor were retrieved for the selection of differentially expressed genes. When selecting top-ranking p52-induced genes, only probe sets mapping to known genes and having positive expression changes were considered.

molecule: total RNA

organism: Mus musculus

source_name: WT with LPS, pooled from 3 mice lungs

growth_protocol: CCSP-tTS/(tet-O)7-FLAG-p52 mice on an FVB background were mated to CCSP-rtTA homozygous mice (gift from Dr. J.A. Whitsett, University of Cincinnati, Cincinnati, OH) to generate CCSP-p52 mice, which inducibly express FLAG-tagged p52 in the airway epithelium. Age- and sex-matched transgenic mice along with genotype-negative littermate controls (called WT in our studies) were used in experiments.

extract_protocol: The RNeasy Mini kit (Qiagen) was used to isolate whole lung RNA from the lungs of CCSP-p52 and WT mice on dox for 1 week and mice on dox for 1 week 48 hours after intratracheal LPS administration.

treatment_protocol: Transgene expression of p52 was activated by administering 2 g/L dox (Sigma) along with 2% sucrose in drinking water.  CCSP-p52 and WT mice were put on dox for 1 week;  half mice were additionally subjected to intratracheal LPS administration for 48 hours right before sacrifice.

value: lung

tag: strain

value: FVB

tag: age

value: 8-12 weeks old

tag: Sex

value: evenly mixed in each group

tag: inducedexpression

tag: stimulus

value: Lipopolysaccharide (LPS)


title: Lung_WT-inLPS_rep2

description:
WT mice on dox for 1 week 48 hours after intratracheal LPS administration
WT-LPS_86

scan_protocol: RNA quality control, hybridization to the Affymetrix Mouse Gene 1.0 ST array, and array scanning were performed by the Vanderbilt VANTAGE Core.


title: Lung_p52-inLPS_rep1

description:
CCSP-p52 mice on dox for 1 week 48 hours after intratracheal LPS administration
CCSP-p52-LPS_87

source_name: CCSP-p52 with LPS, pooled from 3 mice lungs

label_protocol: RNA quality control, hybridization to the Affymetrix Mouse Gene 1.0 ST array, and array scanning were performed by the Vanderbilt VANTAGE Core.


title: Lung_p52_rep1

description:
CCSP-p52 mice on dox for 1 week
CCSP-p52_83

source_name: CCSP-p52 dox only, pooled from 3 mice lungs


title: Lung_WT_rep2

description:
WT mice on dox for 1 week
WT_82

source_name: WT dox only, pooled from 3 mice lungs


title: Lung_p52-inLPS_rep2

description:
CCSP-p52 mice on dox for 1 week 48 hours after intratracheal LPS administration
CCSP-p52-LPS_88


title: MGF34_CD14

city: Paris

first: Sonia

last: Berrih-Aknin

state: State...

address: 105  Boulevard de l’Hôpital

department: Sorbonne Universités

country: France

institute: UPMC - Inserm UMRS 974, CNRS FRE3617

hyb_protocol: Standard Illumina hybridization protocol

scan_protocol: Standard Illumina scanning protocol

data_processing: Data was  log2 transformed data and   filtered for non-expressed genes (detection p-value<0.01), and for low variance transcripts across samples (variance <5%). Data was normzlaized using loess normaliztion and analyzed  using one-way ANOVA using JMP Genomics V7 software (SAS Institute Inc, Cary, NC)

source_name: Monocyte RNA from MG female age 34

label_protocol: Biotinylated cRNA were prepared with the TargetAmp™- Nano Labeling Kit for  Illumina® Expression BeadChip®

extract_protocol: PBMCs were purified from 60 ml blood by Ficoll density gradient centrifugation (U16 NovaMed). The CD14 subset was isolated using EasySep™ Human Monocyte Enrichment Kit (#19059 Stemcell).  Recovery was 65-80% with a purity > 95% for all cell-subsets.  From each sample both RNA and DNA was extracted using AllPrep kit (#80204 QIAGENE) according to manufacturer's protocol. DNA concentration was measured by picogreen and stored at 4°C until use. RNA quantity and quality was measured by NanoDrop and Agilent BioAnalyzer respectively and stored at -80°C until use.

value: blood

tag: cell type

value: CD14 purified from PBMC

value: 34 years

tag: clincal phenotype

value: MG

tag: twin status

value: Singelton

tag: arrayrun

value: III


title: F36N_CD14

source_name: Monocyte RNA from a healthy female age 36

value: 36 years

value: Healthy


title: C_MG_108_CD14 2

source_name: Repeat of C_MG_108_CD14

value: 59 years


title: Lung_p52_rep2

description:
CCSP-p52 mice on dox for 1 week
CCSP-p52_84


title: D_H_193_CD14

source_name: Monocyte RNA from female  MG discordant twins  pair19

value: Twin pair 19

value: II

value: Female


title: D_MG_195_CD14

value: Twin Pair 19


title: MGF59_CD14

source_name: Monocyte RNA from MG female age 59


title: MGF48_CD14

source_name: Monocyte RNA from MG female age 48

value: 48 years


title: F49O_CD14

source_name: Repeat of F49CD14

value: 49 years


title: C_MG_219_CD14

source_name: Monocyte RNA from female  MG concordant twins  pair21

value: 66 years

value: Twin pair 21


title: D_MG_223_CD14

source_name: Monocyte RNA from female  MG discordant twins  pair22

value: blood

value: 21 years

value: Twin pair 22


title: D_MG_176_CD14

source_name: Monocyte RNA from female  MG discordant twins  pair17

value: CD14 purified from PBMC

value: 35 years

value: MG

value: Twin Pair 17


title: C_MG_189_CD14

source_name: Monocyte RNA from female  MG concordant twins  pair18

value: 54 years

value: Twin Pair 18


title: C_MG_188_CD14


title: D_H_222_CD14

value: Healthy

value: Twin piar 22


title: D_H_177_CD14

value: Twin pair 17

value: II

value: Female


title: F23N_CD14

source_name: Monocyte RNA from a healthy female age 23

value: 23 years

value: Singelton

value: III


title: F32N_CD14

source_name: Monocyte RNA from a healthy female age 32

value: blood

value: 32 years


title: C_MG_218_CD14

value: 66 years

value: Twin pair 21


title: C_MG_108_CD14

source_name: Monocyte RNA from female  MG concordant twins  pair10

value: CD14 purified from PBMC

value: 59 years

value: Twin Pair 10


title: C_MG_107_CD14

value: MG


title: Lung_WT_rep1

description:
WT mice on dox for 1 week
WT_81

value: lung

value: FVB

value: 8-12 weeks old

value: evenly mixed in each group


title: F52CD14

source_name: Monocyte RNA from a healthy female age 52

value: 52 years

value: Healthy

value: I


title: F30CD14

source_name: Monocyte RNA from a healthy female age 30

value: 30 years

value: Singelton

value: Female


title: F41CD14

source_name: Monocyte RNA from a healthy female age 41

value: blood

value: 41 years


title: F49CD14

source_name: Monocyte RNA from a healthy female age 49

value: 49 years


title: sample_214275-CP-saliva

source_name: Child

value: Male

value: saliva


title: F33CD14

source_name: Monocyte RNA from a healthy female age 33

value: CD14 purified from PBMC

value: 33 years


title: y2

city: Tokyo

first: AI

last: Mitsuhashi

address: 5-1-1, Tsukiji, Chuo-ku

country: Japan

institute: National Cancer Center Research Institute

hyb_protocol: Hybridized for 16 h at 32 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..

scan_protocol: 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction (Toray Industries Inc., Tokyo, Japan).

data_processing: The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all negative control 2 spots’ signal intensities of 95% confidence intervals. To normalize the signals across different microarrays, the global median normalization method was used, and the median of the distribution was set at 25.

source_name: primary breast cancer

label_protocol: Extracted total RNA was labeled with Cy5 using the 3D-Gene miRNA labeling kit (Toray Industries Inc., Tokyo, Japan).

extract_protocol: On average, eight µm-thick sections were prepared for the extraction of total RNA using miRNeasy FFPE kit® (QIAGEN) from tumor cell-rich areas which were identified by a surgical pathologist (AH).

value: primary breast cancer

tag: patient id

tag: Stage

tag: ihc subtype

value: Luminal B

tag: recurrence status in the first  5 years after surgery

value: No


title: y8

value: Luminal A


title: y9


title: y3

value: Triple negative


title: y10


title: y1


title: y7


title: y14


title: y12


title: y15


title: y16


title: y19


title: sample_247947-CP-saliva


title: y21


title: y23


title: y25

value: Luminal B Her2+


title: y28


title: y26


title: Genomic DNA from GSC23

city: Chicago

first: Rajendra

middle: Prasad

last: Pangeni

state: IL

department: Neurology

institute: Northwestern University

hyb_protocol: bisulphite converted DNA was hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing:
Illumina GenomeStudio Software
Unmethylated and methylated signal intensities

label: Cy3 and Cy5

source_name: glioma stem cells23

label_protocol: Standard Illumina Protocol

growth_protocol: Cells grown on DMEM F12, supplemented with B27, EGF, FGF and heparin at 37°C with 5% CO2

extract_protocol: genomic DNA was extracted using Gentra Puragene Cell kit (Qiagen, USA) according to manufacturer's instructions

value: glioma stem cells

tag: subtypes

value: Unknown phenotype 1


title: Genomic DNA from GSC22

description: UNKNOWN

source_name: glioma stem cells22

value: Unknown phenotype


title: Genomic DNA from GSC16

source_name: glioma stem cells16

value: Unknown phenotype 2


title: Genomic DNA from GSC19

source_name: glioma stem cells19


title: Genomic DNA from GSC18

description: PN

source_name: glioma stem cells18

value: Proneural GSC


title: y29


title: y30


title: Genomic DNA from GSC14

source_name: glioma stem cells14


title: y33


title: Genomic DNA from GSC21

description: MES

source_name: glioma stem cells21

value: Mesenchymal GSC


title: y32


title: Genomic DNA from GSC20

description: UNKNOWN

source_name: glioma stem cells20

value: Unknown phenotype 3


title: y35


title: y34


title: Genomic DNA from GSC17

source_name: glioma stem cells17


title: Genomic DNA from GSC9

description: PN

source_name: glioma stem cells9


title: Genomic DNA from GSC15

source_name: glioma stem cells15


title: y36


title: Genomic DNA from GSC10

description: PN

source_name: glioma stem cells10


title: Genomic DNA from GSC12

source_name: glioma stem cells12


title: Genomic DNA from GSC11

source_name: glioma stem cells11


title: y38


title: y31


title: y37


title: Genomic DNA from GSC7

description: PN

source_name: glioma stem cells7


title: Genomic DNA from GSC4

description: PN

source_name: glioma stem cells4


title: y39

source_name: primary breast cancer


title: Genomic DNA from GSC13

source_name: glioma stem cells13


title: Genomic DNA from GSC6

description: PN

source_name: glioma stem cells6


title: y40


title: Genomic DNA from GSC8

description: PN

source_name: glioma stem cells8


title: y41

value: Yes


title: Genomic DNA from GSC2

description: MES

source_name: glioma stem cells2


title: CMG_188: monocytes DNA from female MG concordant twins pair18

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 18
Array Run II
CMG_188

data_processing: The methylation β-values were extracted  from iDAT files and normalized using ChAMP R pipeline, .

source_name: monocytes

label_protocol: Satndart Illumina label protocol

value: Female

tag: age (years)

tag: clinical phenotype

value: MG


title: Genomic DNA from GSC1

description: MES

source_name: glioma stem cells1


title: DMG_223: monocytes DNA from female MG discordant twins pair22

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 22
Array Run II
DMG_223

tag: gender

value: CD14 purified from PBMC


title: CMG_189: monocytes DNA from female MG concordant twins pair18

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 18
Array Run II
CMG_189


title: y13

tag: tissue

value: primary breast cancer


title: y11

tag: age


title: y4


title: DH_222: monocytes DNA from female MG discordant twins pair22

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 22
Array Run II
DH_222

value: Healthy


title: y42

value: No


title: DH_177: monocytes DNA from female MG discordant twins pair17

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 17
Array Run II
DH_177


title: Genomic DNA from GSC5

description: PN

source_name: glioma stem cells5


title: y17


title: DMG_176: monocytes DNA from female MG discordant twins pair17

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 17
Array Run II
DMG_176


title: CMG_218: monocytes DNA from female MG concordant twins pair21

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 21
Array Run II
CMG_218


title: y18


title: y20


title: DMG_195: monocytes DNA from female MG discordant twins pair19

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 19
Array Run II
DMG_195


title: Genomic DNA from GSC3

description: MES

source_name: glioma stem cells3


title: DH_193: monocytes DNA from female MG discordant twins pair19

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 19
Array Run II
DH_193


title: y24

value: Luminal B


title: CMG_219: monocytes DNA from female MG concordant twins pair17

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 21
Array Run II
CMG_219


title: y43


title: CMGO_108: Repeat of CMG_108

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 10
Array Run II
CMGO_108


title: n6

source_name: normal tissues neighboring  breast cancer

value: normal breast

value: Triple negative


title: y44

value: Luminal A


title: n8


title: n9


title: n7


title: F33: Monocytes DNA from healthy female

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run I
F33


title: y45


title: n12


title: n15


title: MGF48: monocytes DNA from female MG singlton

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run: III
MGF48


title: n25

value: Luminal B Her2+


title: n14


title: n28


title: n26


title: y5


title: n22


title: n33


title: F49O: Repeat of F49

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run: III
F49O


title: F32N: Monocytes DNA from healthy female

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run: III
F32N


title: n35


title: n43


title: y6


title: F49: Monocytes DNA from healthy female

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run I
F49


title: F23N: Monocytes DNA from healthy female

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run: III
F23N


title: RCH_p1

city: Sydney

first: Ashwin

last: Unnikrishnan

state: NSW

address: Room 217, Level 2, Adult Cancer Program, Lowy Cancer Research Centre, University of New South Wales

department: Lowy Cancer Research Centre

country: Australia

institute: University of New South Wales

description: Reprogrammed Chondrocytes

scan_protocol: Illumina BeadArray Reader HD, Software version 3.0 BeadScan Software

data_processing: The data was normalized using quantile normalization on GenePattern.

label: Biotin

source_name: mouse adult bone marrow mesenchymal stem cells

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays

extract_protocol: Total RNA was extracted using Qiagen's Rneasy kit following manufacturer's standard recommendation.

tag: strain

value: Reprogrammed Chondrocytes


title: Os_d21

description: Differentiated Ostoecytes

value: Differentiated Ostoecytes


title: RAD_p1

description: Reprogrammed Adipocytes

value: Reprogrammed Adipocytes


title: n5


title: n38


title: MSC_p4

description: Undifferentiated MSCs

value: Undifferentiated MSCs


title: CMG_107: monocytes DNA from female MG concordant twins pair10

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 10
Array Run II
CMG_107


title: MGF34: monocytes DNA from female MG singlton

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run: III
MGF34


title: Ad_d7

description: Differentiated Adipocytes

value: Differentiated Adipocytes


title: y22


title: y27

value: Yes


title: ROS_p1

description: Reprogrammed Osteocytes

value: Reprogrammed Osteocytes


title: MSC_d0

description: Undifferentiated MSCs


title: Ch_d28

description: Differentiated Chondrocytes

value: Differentiated Chondrocytes


title: CMG_108: monocytes DNA from female MG concordant twins pair10

description:
CD14 isolated using EasySep™#19059 Stemcell
Twin pair 10
Array Run: III
CMG_108

value: Female

value: MG

value: CD14 purified from PBMC


title: F36N: Monocytes DNA from healthy female

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run: III
F36N

value: Healthy


title: Adult Microglia 6

status: Public on Nov 21 2017

city: Singapore

first: jinmiao

last: chen

address: 8A Biomedical Grove, #04-06 Immunos

country: Singapore

institute: Singapore Immunology Network

description: Replicate 6

hyb_protocol: 1500 ng of cRNA was hybridized on Illumina Mouse WG-6 Version 2 chips (Illumina, San Diego, CA, USA) for 17 hours at 58°C.

scan_protocol: The chips were scanned using BeadArray Scanner 500GX (Illumina, San Diego, CA, USA).

data_processing: Raw intensity values of gene expression were extracted from microarray data using Illumina GenomeStudio software, and quantile-normalized using R package lumi.

source_name: Mouse brain

label_protocol: Biotinylated cRNA was prepared according to the protocol by TargetAmp™-Nano Labeling Kit for Illumina® Expression BeadChip® (Epicentre® (an Illumina company)) using 50 ng of total RNA.

extract_protocol: Total RNA was extracted using the Ambion mirVana™ miRNA Isolation Kit (Ambion® Thermo Fisher Scientific, Waltham, MA, USA) according to manufacturer's protocol.

value: Brain

tag: developmental stage

value: Adult (2 months)


title: Newborn (P0) Microglia 3

description: Replicate 3

value: New born (P0)


title: Newborn (P0) Microglia 2

description: Replicate 2


title: E16.5 Microglia 3

description: Replicate 3


title: E16.5 Microglia 2

description: Replicate 2


title: Adult Microglia 5

description: Replicate 5


title: F52: Monocytes DNA from healthy female

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run I
F52


title: Adult Microglia 1

description: Replicate 1


title: E12.5 Microglia 2

description: Replicate 2


title: E16.5 Microglia 1

description: Replicate 1


title: E18.5 Microglia 2

description: Replicate 2


title: Newborn (P0) Microglia 1

description: Replicate 1


title: Adult Microglia 2

description: Replicate 2


title: Adult Microglia 3

description: Replicate 3


title: E18.5 Microglia 1

description: Replicate 1


title: E12.5 Microglia 1

description: Replicate 1


title: E18.5 Microglia 3

description: Replicate 3


title: E14.5 Microglia 3

description: Replicate 3


title: E10.5 Yolk sac Mac 4

description: Replicate 4

source_name: Mouse yolk sac

value: Yolk sac


title: E14.5 Microglia 2

description: Replicate 2


title: E10.5 Yolk sac Mac 3

description: Replicate 3


title: E10.5 Microglia 1

description: Replicate 1


title: Adult Microglia 4

description: Replicate 4


title: E10.5 Microglia 2

description: Replicate 2


title: E10.5 Microglia 3

description: Replicate 3


title: E12.5 Microglia 3

description: Replicate 3


title: E14.5 Microglia 1

description: Replicate 1


title: E10.5 Yolk sac Mac 2

description: Replicate 2


title: Cholangiocarcinoma biopsy

city: Moscow

first: Maria

middle: Vladimirovna

last: Suntsova

address: Miklukho-Maklaya, 16/10

department: Department of Genetics and Postgenomic Technologies

country: Russia

institute: M.M. Shemyakin and Yu.A. Ovchinnikov  Institute of  bioorganic chemistry of the Russian Academy of Sciences

hyb_protocol: Hybridization was performed according to CustomArray ElectraSense™ Hybridization and Detection protocol. Hybridization mix contained 2.5 ug of labeled DNA library, 6X SSPE, 0.05% Tween-20, 20mM EDTA, 5x Denhardt solution, 100 ng/ul sonicated calf thymus gDNA, 0,05% SDS. Hybridization mix was incubated with chip overnight at 50ºC.

scan_protocol: Hybridization efficiency was detected electrochemically using CustomArray ElectraSense™ Detection Kit and ElectraSense™ 4X2K/12K Reader.

data_processing: Electrochemical signal intensity valued by ElectraSense™Software. Gene expression data was merged with adult liver control tissues from GSE61276 and quantile normalized using R statistical programming language and 'preprocessCore' library. Probe IDs from GSE61276 were converted to Entrez Gene ID with manufacturer manifest file (Illumina humanht-12 v4). Probes were geometrically averaged for each gene. Case gene expression data was merged with gene expression in normal tissues by Entrez Gene ID.

source_name: Cholangiocarcinoma formalin-fixed, paraffin-embedded (FFPE) biopsy sample

label_protocol: Complete Whole Transcriptome Amplification WTA2 Kit (Sigma) was used for reverse transcription and library amplification. Manufacturer's protocol was modified by adding to amplification reaction dNTP mix containing biotinylated dUTP, resulting to final proportion dTTP/biotin-dUTP as 5/1.

extract_protocol: RecoverAll™ Total Nucleic Acid Isolation Kit (Ambion) was used for total RNA extraction. RNA was quantified using NanoDrop.

value: Cholangiocarcinoma


title: MGF59: monocytes DNA from female MG singlton

description:
CD14 isolated using EasySep™#19059 Stemcell
Singleton
Array Run: III
MGF59


title: ID006: nitrogenXheatXco2_rep3

city: Beijing

first: Yunfeng

last: Yang

address: No.1 Qinghuayuan, Haidian District

department: School of Environment

country: China

institute: Tsinghua University

hyb_protocol: labeled DNA was hybridized with GeoChip 4.6 at 42℃ for 16 h on a MAUI hybridization station (BioMicro, Salt Lake City, UT, USA)

scan_protocol: scanned with a NimbleGen MS 200 Microarray Scanner (Roche, Basel, Switzerland)

data_processing: we processed raw GeoChip data using the following steps: (i) removed the spots with a signal-to-noise ratio (SNR) less than 2.0; (ii) log-transformed the data and then, on each microarray, divide them by the mean intensity of all the genes; and (iii) remove genes detected only once in four replicates.

organism: soil metagenome

source_name: nitrogenXheatXco2 (interactive effect)

label_protocol: DNA was labeled with Cy-3 fluorescent dye using random priming method, purified and dried at 45℃ (SpeedVac, ThermoSavant, Milford, MA, USA).

growth_protocol: The experiment was conducted at the Jasper Ridge Global Change Experiment (JRGCE) site located in California, USA, which has been operated on an annual grassland under a Mediterranean-type climate at the Jasper Ridge Biological Preserve (37°24’N, 122°13’W) since October 1998. Soil samples were collected in April 2012, i.e. 14 years after the experiment began.

extract_protocol: DNA was extracted from 5 g of well mixed soil using a freeze-grinding mechanical lysis method as previously described (Zhou et al., 1996). DNA was purified by agarose gel electrophoresis followed by extractions with phenol and chloroform, and precipitation with butanol. DNA quality was determined by light absorbance ratio at wavelengths of 260/280nm and 260/230nm using a Nanodrop (NanoDrop Technologies Inc., Wilmington, DE, USA). Then, DNA concentrations were quantified with PicoGreen (Ahn et al., 1996) using a FLUOstar Optima microplate reader (BMG Labtech, Jena, Germany).

treatment_protocol: The JRGCE was designed to assess grassland responses to single and multiple components of global change, which includes elevated CO2, warming, nitrate amendment and enhanced precipitation. Each experimental unit at the JRGCE was circular, 2 m in diameter, and equally divided into four quadrants of 0.78 m2. The CO2 and warming treatments are operated at the plot level and N and water treatments were operated at the quadrants level in a factorial design. This creates 16 treatments with 8 replicates each. However, an experimental fire burned four replicate blocks in 2011 to simulate the wildfire effect, thus only the other four replicate blocks (a total of 64 samples) were used in this study.

tag: nitrogen

value: yes


title: ID021: nitrogenXheatXwater_rep1


title: ID074: nitrogenXwaterXheatXco2_rep2


title: ID095: nitrogenXheatXco2_rep4


title: ID077: nitrogenXheatXwater_rep2


title: ID093: nitrogenXwaterXheatXco2_rep4


title: ID043: nitrogenXheatXco2_rep1


title: ID014: nitrogenXco2_rep3

source_name: nitrogenXco2 (interactive effect)


title: ID085: nitrogenXheatXwater_rep4


title: ID084: nitrogenXco2Xwater_rep2

source_name: nitrogenXco2Xwater (interactive effect)


title: ID013: nitrogenXco2Xwater_rep3


title: ID088: nitrogenXheat_rep4

source_name: nitrogenXheat (interactive effect)


title: ID037: nitrogenXco2_rep1


title: ID075: nitrogenXheatXco2_rep2


title: ID098: nitrogenXco2_rep4


title: ID083: nitrogenXco2_rep2


title: ID044: nitrogenXwaterXheatXco2_rep1


title: ID011: nitrogenXheatXwater_rep3


title: ID099: nitrogenXco2Xwater_rep4


title: ID004: nitrogenXwater_rep3

source_name: nitrogenXwater (interactive effect)


title: ID121: nitrogenXwater_rep2


title: ID005: nitrogenXwaterXheatXco2_rep3


title: ID089: nitrogen_rep4

source_name: nitrogen (7g of N per m2 per year calcium nitrate)


title: ID038: nitrogenXco2Xwater_rep1


title: ID080: nitrogenXheat_rep2


title: ID024: nitrogenXheat_rep1


title: ID009: nitrogenXheat_rep3


title: ID092: nitrogenXwater_rep4


title: ID020: nitrogenXwater_rep1


title: ID002: nitrogen_rep3


title: E10.5 Yolk sac Mac 1

description: Replicate 1


title: ID122: nitrogen_rep2


title: ID008: heatXco2_rep3

source_name: heatXco2 (interactive effect)

value: no


title: ID073: waterXheatXco2_rep2

source_name: waterXheatXco2 (interactive effect)


title: ID007: waterXheatXco2_rep3


title: ID017: nitrogen_rep1


title: ID016: co2Xwater_rep3

source_name: co2Xwater (interactive effect)


title: ID094: heatXco2_rep4


title: ID081: co2Xwater_rep2


title: ID097: co2Xwater_rep4


title: ID076: heatXco2_rep2


title: ID087: heatXwater_rep4

source_name: heatXwater (interactive effect)


title: ID040: co2_rep1

source_name: co2 ( 680 ppm(Ambient CO2 concentrations averaged 380  ppm))


title: ID039: co2Xwater_rep1


title: ID041: waterXheatXco2_rep1


title: ID096: waterXheatXco2_rep4


title: ID100: co2_rep4


title: ID015: co2_rep3


title: ID010: heatXwater_rep3


title: ID023: heatXwater_rep1


title: ID078: heatXwater_rep2


title: ID086: heat_rep4

source_name: heat ( increased 1.5°C)


title: ID042: heatXco2_rep1


title: ID012: heat_rep3


title: ID082: co2_rep2


title: ID091: water_rep4

source_name: water (An irrigation system increased precipitation by supplementing 50% to every rainfall event)


title: ID022: heat_rep1


title: ID079: heat_rep2


title: ID018: water_rep1


title: ID001: water_rep3


title: ID123: water_rep2


title: ID019: control_rep1

source_name: control (undisturbed plots)


title: ID090: control_rep4


title: SAMPLE 13: WholeBlood_Healthy

city: Antwerp (Wilrijk)

first: Ken

last: Declerck

address: Universiteitsplein 1

country: Belgium

institute: University of Antwerp

description:
SAMPLE 13
Whole blood gDNA from healthy subject

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol

data_processing: Cg-probes were filtered before normalization based on following criteria: probes containing a SNP within 3 bp of the analysed CpG site, bad quality probes based on an iterative greedycut algorithm where a detection p-value of 0.01 was set as a threshold for an unreliable measurement, and probes with missing values in at least one sample. After filtering these cg-probes, beta-values were within-array normalized using the beta mixture quantile dilation (BMIQ) method. Another filtering step was performed after normalization based on following criteria: probes measuring methylation not at CpG sites.

label: Cy5 and Cy3

source_name: WholeBlood, Healthy

extract_protocol: gDNA was extracted from whole blood samples using Dnaesy Blood & Tissue kit from Qiagen

tag: disease

value: Male

value: Whole blood


title: SAMPLE 16: WholeBlood_Healthy

description:
SAMPLE 16
Whole blood gDNA from healthy subject


title: ID124: control_rep2


title: SAMPLE 15: WholeBlood_Healthy

description:
SAMPLE 15
Whole blood gDNA from healthy subject


title: SAMPLE 11: WholeBlood_Healthy

description:
SAMPLE 11
Whole blood gDNA from healthy subject


title: ID003: control_rep3


title: SAMPLE 14: WholeBlood_Healthy

description:
SAMPLE 14
Whole blood gDNA from healthy subject


title: SAMPLE 9: WholeBlood_Healthy

description:
SAMPLE 9
Whole blood gDNA from healthy subject


title: SAMPLE 10: WholeBlood_Healthy

description:
SAMPLE 10
Whole blood gDNA from healthy subject


title: SAMPLE 7: WholeBlood_Atherosclerosis

description:
SAMPLE 7
Whole blood gDNA from atherosclerotic patient

source_name: WholeBlood, Atherosclerosis

value: Atherosclerosis


title: SAMPLE 12: WholeBlood_Healthy

description:
SAMPLE 12
Whole blood gDNA from healthy subject


title: SAMPLE 8: WholeBlood_Atherosclerosis

description:
SAMPLE 8
Whole blood gDNA from atherosclerotic patient


title: SAMPLE 6: WholeBlood_Atherosclerosis

description:
SAMPLE 6
Whole blood gDNA from atherosclerotic patient


title: SAMPLE 1: WholeBlood_Atherosclerosis

description:
SAMPLE 1
Whole blood gDNA from atherosclerotic patient


title: Human Fetal Microglia 16+2

description: Early stage

hyb_protocol: 750 ng of cRNA was hybridized on Illumina Human-HT12 Version 4 chips (Illumina, San Diego, CA, USA) for 17 hours at 58°C.

source_name: Human fetal brain

label_protocol: Biotinylated cRNA was prepared according to the protocol by Epicentre TargetAmp™ 2-Round Biotin-aRNA Amplification Kit 3.0 (Epicentre® (an Illumina company)) using 500 pg of total RNA.

extract_protocol: Total RNA was isolated from Human fetal microglia cells following the double extraction protocol:  RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction (TRIzol, Thermo Fisher Scientific) followed by a Qiagen RNeasy Micro clean-up procedure according to the manufacturer's protocol.

value: 16 weeks 2 days EGA


title: SAMPLE 5: WholeBlood_Atherosclerosis

description:
SAMPLE 5
Whole blood gDNA from atherosclerotic patient


title: Human Fetal Microglia 16+5

description: Early stage

value: 16 weeks 5 days EGA


title: Human Fetal Microglia 19+5

description: Late stage

value: 19 weeks 5 days EGA


title: Human Fetal Microglia 14 (2)

description: Early stage

value: 14 weeks EGA


title: SAMPLE 4: WholeBlood_Atherosclerosis

description:
SAMPLE 4
Whole blood gDNA from atherosclerotic patient


title: Human Fetal Microglia 14 (1)

description: Early stage


title: Diaphragm 12 weeks_LFA_rep1

status: Public on Nov 20 2017

city: Leicester

first: Kate

middle: Marie

last: Dudek

address: Hodgkin Building, Lancaster Road

department: Genomics Group

country: United Kingdom

institute: MRC Toxicology Unit

description: Gene expression after 12 weeks - LFA treated mice - diaphragm

hyb_protocol: 600 ng of Cy3-labelled cRNA (specific activity >6.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 25 µl containing 25x Agilent fragmentation buffer and 10x Agilent blocking agent following the manufacturer's instructions. On completion of the fragmentation reaction, 25 µl of 2x Agilent GE hybridization buffer was added to the fragmentation mixture and hybridized to Agilent SurePrint G3 Mouse 8x60k microarrays (G4852A) for 17 hours at 65°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed for 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute at 37°C with GE Wash buffer 2 (Agilent). Slides were slowly removed from wash buffer 2 and scanned immediately.

scan_protocol: Slides were scanned on an Agilent Microarray scanner (G2505C) using scan control version A.8.4.1. Scan resolution was 3 µm, the green channel was scanned and the PMT was set to 100%.

data_processing: Data was extracted using the Agilent Feature Extraction software (version 10.7.3.1) using parameters: Grid name 028005_D_F_20120201 and Protocol GE1_107_Sep09. Data was analysed using Agilent GeneSpring GX software (version 12.1). To analyse statistically significant differential expression an unpaired Student’s T-Test with Benjamini-Hochberg multiple testing correction was applied. mRNAs that had a p value ≤ 0.05 and a fold change of > 2.0 were considered to be both statistically and biologically significant.

source_name: Diaphragm RNA, LFA, 12 weeks

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 200 ng RNA using the One-Color Low Input Quick Amp Labelling kit (Agilent) according to the manufacturer's instructions, followed by RNeasy column purification (Qiagen).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

growth_protocol: Mice were kept in a group size of five in standard caging with sawdust bedding within a pathogen-free Home Office approved facility. Mice were maintained on a normal 12-h light and dark cycle. Prior to the treatment, mice were kept for 7 days in the facility to acclimatize.

extract_protocol: RNA was extracted using TRIzol as per the manufacturer's instructions (Life Technologies). Quality of the extracted RNA was checked using a NanoDrop ND-1000 and Agilent Bioanalyser.

treatment_protocol: Carbon nanotubes were uniformly dispersed by ultrasonication in 0.5% bovine serum albumin (BSA)/saline at a concentration of 50 μg/ml and were injected into the pleural cavity of female C57Bl/6 mice (aged 8 weeks) at a dose of 50μg/mL (100 μL; total dose, 5 μg per mouse).   Mixed length amosite asbestos enriched for long fibers (LFA) (100% fibers ≥ 5 µm, 50.3% fibers > 15 μm, and 35.2% fibers > 20 μm), and shortened amosite asbestos (SFA) (3.1% fibers ≥ 5 μm) were created from the same batch of South African amosite obtained from the Manville Corporation, United States. SFA was prepared by grinding long fibers in a ceramic ball mill, and the resulting fiber preparation sedimented in water. Asbestos fibre samples were dispersed in 0.5% BSA/saline and administered at a dose of 25 μg/mouse. 100 μL of 0.5% BSA/saline was injected into mice as a vehicle control.  Injection directly into the pleural space without perforating the lung was enabled by the addition of a sleeve over the tip of the 27-Gauge, which prevented the needle from passing through the pleural space into the lung. Five groups of mice received injection of one of the following: vehicle control, SFA, LFA, NTS and NTL, with n=4 in each group. After 12 weeks the mice were euthanized by asphyxiation in 100% CO2 and the diaphragms were collected, sanp frozen and stored at -80°C.

value: Female

value: Diaphragm

tag: type of fibre

value: Long asbestos fibres


title: Human Fetal Microglia 23+3

description: Late stage

value: Brain

value: 23 weeks 3 days EGA


title: Human Fetal Microglia 16

description: Late stage

value: 16 weeks EGA


title: Diaphragm 12 weeks_NTL_rep4

description: Gene expression after 12 weeks - NTL treated mice - diaphragm

source_name: Diaphragm RNA, NTL, 12 weeks

value: Long carbon nanotubes


title: Diaphragm 12 weeks_SFA_rep3

description: Gene expression after 12 weeks - SFA treated mice - diaphragm

source_name: Diaphragm RNA, SFA, 12 weeks

value: Short asbestos fibres


title: Diaphragm 12 weeks_NTL_rep2


title: Diaphragm 12 weeks_NTS_rep2

description: Gene expression after 12 weeks - NTS treated mice - diaphragm

source_name: Diaphragm RNA, NTS, 12 weeks

value: Short carbon nanotubes


title: Diaphragm 12 weeks_NTS_rep4


title: Diaphragm 12 weeks_NTS_rep1


title: Diaphragm 12 weeks_LFA_rep3


title: Diaphragm 12 weeks_SFA_rep2


title: Diaphragm 12 weeks_NTS_rep3


title: Diaphragm 12 weeks_LFA_rep4


title: Diaphragm 12 weeks_SFA_rep1


title: SAMPLE 2: WholeBlood_Atherosclerosis

description:
SAMPLE 2
Whole blood gDNA from atherosclerotic patient


title: D2 (differentiated 30 day mouse osteoblasts)

city: Houston

first: Li-yuan

last: Yu-Lee

state: TX

address: One Baylor Plaza

department: Medicine

institute: Baylor College of Medicine

description: differentiated 30 day mouse osteoblasts

hyb_protocol: 1 μg of each labeled cRNA was fragmented by adding 11 μl 10 × Blocking Agent and 2.2 μl of 25×Fragmentation Buffer, then heated at 60 °C for 30 min, and finally 55 μl 2 × GE Hybridization buffer was added to dilute the labeled cRNA. 100μl of hybridization solution was dispensed into the gasket slide and assembled to the gene expression microarray slide. The slides were incubated for 17 hours at 65°C in an Agilent Hybridization Oven.

scan_protocol: The hybridized arrays were washed, fixed and scanned with using the Agilent DNA Microarray Scanner (part number G2505C).

data_processing:
Raw gene data normalization and low intensity filtering: Raw signal intensities were normalized in quantile method by GeneSpring GX software (v11.5.1), and low intensity genes were filtered (Genes that at least 1 out of 6 samples have flags in Detected were chosen for further analysis).
Differentially expressed genes screening: Contains differentially expressed Genes with statistical significance that passed Volcano Plot filtering (Fold Change >= 2.0, P-value <= 0.05).

source_name: differentiated 30 day mouse osteoblasts

label_protocol: Sample labeling and array hybridization were performed according to the Agilent One-Color Microarray-Based Gene Expression Analysis protocol (Agilent Technology). Briefly, total RNA from each sample was linearly amplified and labeled with Cy3-UTP. The Labeled cRNAs were purified by RNeasy Mini Kit (Qiagen). The concentration and specific activity of the labeled cRNAs (pmol Cy3/μg cRNA) were measured by NanoDrop ND-1000.

growth_protocol: Calvarial mouse osteoblasts were prepared from 2-5 day old newborn mice. Osteoblasts were cultured in MEM+10% FBS until confluence (undifferentiated osteoblasts, samples C1 and C2).  Confluent osteoblasts were cultured in differentiation medium for 30 days (differentiated osteoblasts, samples D1 and D2). Confluent osteoblasts were cultured in differentiation medium plus cabozantinib (XL184) for 30 days (sample X1 and X2).

extract_protocol: RNA was prepared using TrizolRNA preparation kit plus RNAeasy according to manufacturer's protocol.  RNA quantity and quality were measured by NanoDrop ND-1000. RNA integrity was assessed by standard denaturing agarose gel electrophoresis.

value: calvarial osteoblasts

value: 2-5 day newborn mice


title: Human Fetal Microglia 20

description: Late stage

value: 20 weeks EGA


title: Human Fetal Microglia 14+2

description: Early stage

value: 14 weeks 2 days EGA


title: Diaphragm 12 weeks_LFA_rep2


title: Diaphragm 12 weeks_NTL_rep1


title: Diaphragm 12 weeks_NTL_rep3


title: Diaphragm 12 weeks_SFA_rep4


title: X1 (osteoblasts in differentiation medium and cabozantinib for 30 days)

treatment_protocol: Confluent osteoblasts were cultured in differentiation medium plus cabozantinib (XL184) for 30 days (sample X1 and X2).


title: D1 (differentiated 30 day mouse osteoblasts)

description: differentiated 30 day mouse osteoblasts


title: X2 (osteoblasts in differentiation medium and cabozantinib for 30 days)


title: Human Fetal Microglia 15+1

description: Early stage

value: 15 weeks 1 day EGA


title: Diaphragm 12 weeks_control_rep3

description: Gene expression after 12 weeks - 0.5% BSA/saline control  - diaphragm

source_name: Diaphragm RNA, 0.5% BSA/saline control, 12 weeks


title: Diaphragm 12 weeks_control_rep4


title: Diaphragm 12 weeks_control_rep2


title: C2 (undifferentiated mouse osteoblasts)

description: undifferentiated mouse osteoblasts

source_name: undifferentiated mouse osteoblasts


title: Diaphragm 12 weeks_control_rep1


title: SAMPLE 3: WholeBlood_Atherosclerosis

description:
SAMPLE 3
Whole blood gDNA from atherosclerotic patient

value: Atherosclerosis

value: Male

value: Whole blood


title: db/db HSC, biological rep1

city: WORCESTER

first: Lyne

last: Khair

state: MA

address: 368 PLANTATION STREET

department: SURGERY

institute: UMASS MEDICAL SCHOOL

description: microRNA expression in hematopoietic stem cells

hyb_protocol: Following fragmentation, 20 ng of total RNA were hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned by the Affymetrix Scanner 3000(Affymetrix).

data_processing:
The scanned images were analyzed using Expression Console Software (version 1.3.1 Affymetrix)
affymetrix-algorithm-name = rma : dabg

source_name: Hematopoietic stem cells from db/db mice

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 20 ng total RNA

growth_protocol: hematopoietic stem cells were sorted by flowcytometry

extract_protocol: total RNA were isolated by mirVana miRNA isolation kit according to manufacturer's instructions (Applied Biosystems).

tag: cell type

value: bone marrow hematopoietic stem cells

tag: genotype

value: leptin receptor mutation

value: 3 month old mice


title: wt HSC, biological rep1 (2)

source_name: Hematopoietic stem cells from WT mice

value: wt


title: wt HSC, biological rep2 (2)


title: C1 (undifferentiated mouse osteoblasts)

description: undifferentiated mouse osteoblasts


title: Mouse_liver_normal_1

status: Public on Nov 18 2017

city: Ann Arbor

first: Weichen

last: Zhou

state: Michigan

address: 800 fuller St. 26

institute: Fudan University

description: Gene expression data from liver tissue of normal mouse

hyb_protocol: standard Agilent protocol

scan_protocol: standard Agilent protocol

data_processing: The probe signals from microarray data were firstly transformed by Ln and then manipulated with quantitative normalization. To assess the differential expression among cases and controls, we used SFC method.

source_name: Normal samples

label_protocol: standard Agilent protocol

extract_protocol: Male B10.BR (BR, H-2k), B10.D2 (D2, H-2d), C57BL/ 10 (B10, H-2b), and CBA (H-2k) mice (weighing 25-30 g) were purchased from the Shizuoka Laboratory Animal Center (Shizuoka, Japan) and housed and cared for in agreement with the guidelines of the Institutional Animal Care and Use Committee and in agreement with National Research Institute for Child Health and Development guidelines on laboratory animal welfare. The experiment protocol was accepted by the Committee on the Care and Use of Laboratory Animals at the National Research Institute for Child Health and Development (Permission Number: 2002-003). All surgical procedures were conducted by anesthetization with isoflurane/oxygen, and all attempts were carried out to minimize suffering.

value: liver


title: Mouse_liver_day8_transplantation_2

description: Gene expression data from liver tissue of transplantated mouse

source_name: Liver transplantation samples


title: MS1 D1

city: Kodaira

first: Kimitoshi

last: Kimura

state: Tokyo

address: 4-1-1 Ogawahigashi

department: Department of Immunology, National Institute of Neuroscience

institute: National Center of Neurology and Psychiatry

hyb_protocol: Hybridization was carried out at 37 C for 16h with rotary shaking (250 rpm). Hybridization and washing were performed according to the protocols supplied by TORAY Industries, Inc..

data_processing: Raw data of spots were normalized by subtraction with a mean intensity of the background signal that was determined by all blank spots’ signal intensities of 95% confidence intervals.

source_name: multiple sclerosis

label_protocol: Extracted total RNA was labeled with Hy5 using a 3D-Gene miRNA labeling kit.

extract_protocol: Plasma sample was subjected to differential centrifugations, and supernatant was collected after a final centrifugation at 10,000 x g. EVs were collected from the supernatant which was mixed with one-fifth volume of polyethylene glycol buffer (30% PEG 6000, 50 mmol/L HEPES, 1 mol/L NaCl) by a centrifugation of 10,000 x g. Total RNAs were extracted from the EVs by a Plasma/Serum Circulating and Exosomal RNA Purification Kit.

tag: disease state

value: multiple sclerosis

tag: disease type

value: relapsing-remitting MS

value: female

tag: rna source

value: EVs in the plasma


title: MS2 D2

value: male


title: Mouse_liver_normal_2


title: Mouse_liver_day5_transplantation_3


title: Mouse_liver_day8_transplantation_1


title: HC4 C4

source_name: healthy control

value: healthy control


title: MS4 D4


title: Mouse_liver_normal_3


title: Mouse_liver_day8_transplantation_3


title: Mouse_heart_normal_3

description: Gene expression data from heart tissue of normal mouse

value: heart


title: Mouse_heart_normal_1


title: Mouse_liver_day5_transplantation_1


title: HC2 C2


title: HC3 C3


title: HC1 C1


title: Mouse_heart_normal_2


title: MS3 D3


title: genomic DNA from 201172210059_R08C01

status: Public on Nov 17 2017

city: New Haven

first: Ke

last: Xu

address: 300 George St.

department: department of psychiatry

institute: Yale University

description:
201172210059_R08C01_Grn.idat
201172210059_R08C01_Red.idat
Sample 404
whole blood sample

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC Beadchip using standard Illumina protocol

data_processing:
GenomeStudio V2011.1
MatrixProcessed.txt contains ssNoob normalized Average Beta; the signals of common probes between 450k and EPIC were provided.
MethylatedSignal.txt contains Unmethylated and methylated signal intensities

extract_protocol: DNAs were extracted from whole blood using the standard protocol.

tag: Sex

tag: race

value: White

tag: hiv

tag: idu

tag: smoking

tag: artadherence

value: whole blood


title: genomic DNA from 201172540052_R08C01

description:
201172540052_R08C01_Grn.idat
201172540052_R08C01_Red.idat
Sample 402
whole blood sample

tag: age

tag: tissue


title: genomic DNA from 201172530004_R01C01

description:
201172530004_R01C01_Grn.idat
201172530004_R01C01_Red.idat
Sample 1
whole blood sample


title: genomic DNA from 201172210003_R08C01

description:
201172210003_R08C01_Grn.idat
201172210003_R08C01_Red.idat
Sample 405
whole blood sample


title: genomic DNA from 201172530058_R08C01

description:
201172530058_R08C01_Grn.idat
201172530058_R08C01_Red.idat
Sample 403
whole blood sample


title: Mouse_liver_day5_transplantation_2


title: Mouse_heart_day5_transplantation_2

description: Gene expression data from heart tissue of transplantated mouse

source_name: Heart transplantation samples


title: genomic DNA from 201172210003_R06C01

description:
201172210003_R06C01_Grn.idat
201172210003_R06C01_Red.idat
Sample 394
whole blood sample


title: genomic DNA from 201172530058_R07C01

description:
201172530058_R07C01_Grn.idat
201172530058_R07C01_Red.idat
Sample 397
whole blood sample


title: genomic DNA from 201172210059_R07C01

description:
201172210059_R07C01_Grn.idat
201172210059_R07C01_Red.idat
Sample 398
whole blood sample


title: genomic DNA from 201172540052_R07C01

description:
201172540052_R07C01_Grn.idat
201172540052_R07C01_Red.idat
Sample 396
whole blood sample


title: genomic DNA from 201172530038_R08C01

description:
201172530038_R08C01_Grn.idat
201172530038_R08C01_Red.idat
Sample 399
whole blood sample


title: genomic DNA from 201172540040_R07C01

description:
201172540040_R07C01_Grn.idat
201172540040_R07C01_Red.idat
Sample 395
whole blood sample

value: Other


title: genomic DNA from 201172210059_R05C01

description:
201172210059_R05C01_Grn.idat
201172210059_R05C01_Red.idat
Sample 389
whole blood sample

value: Male


title: genomic DNA from 201172530038_R06C01

description:
201172530038_R06C01_Grn.idat
201172530038_R06C01_Red.idat
Sample 391
whole blood sample


title: genomic DNA from 201172540042_R08C01

description:
201172540042_R08C01_Grn.idat
201172540042_R08C01_Red.idat
Sample 401
whole blood sample


title: genomic DNA from 201172540054_R05C01

description:
201172540054_R05C01_Grn.idat
201172540054_R05C01_Red.idat
Sample 388
whole blood sample


title: genomic DNA from 201172210003_R05C01

description:
201172210003_R05C01_Grn.idat
201172210003_R05C01_Red.idat
Sample 390
whole blood sample


title: genomic DNA from 201172210059_R04C01

description:
201172210059_R04C01_Grn.idat
201172210059_R04C01_Red.idat
Sample 383
whole blood sample


title: genomic DNA from 201172210003_R04C01

description:
201172210003_R04C01_Grn.idat
201172210003_R04C01_Red.idat
Sample 384
whole blood sample


title: Mouse_heart_day5_transplantation_3


title: genomic DNA from 201172530038_R05C01

description:
201172530038_R05C01_Grn.idat
201172530038_R05C01_Red.idat
Sample 385
whole blood sample


title: genomic DNA from 201172540052_R05C01

description:
201172540052_R05C01_Grn.idat
201172540052_R05C01_Red.idat
Sample 387
whole blood sample


title: genomic DNA from 201172540040_R04C01

description:
201172540040_R04C01_Grn.idat
201172540040_R04C01_Red.idat
Sample 382
whole blood sample


title: genomic DNA from 201172210059_R03C01

description:
201172210059_R03C01_Grn.idat
201172210059_R03C01_Red.idat
Sample 379
whole blood sample


title: genomic DNA from 201172540040_R08C01

description:
201172540040_R08C01_Grn.idat
201172540040_R08C01_Red.idat
Sample 400
whole blood sample

value: Black


title: genomic DNA from 201172210003_R03C01

description:
201172210003_R03C01_Grn.idat
201172210003_R03C01_Red.idat
Sample 380
whole blood sample


title: genomic DNA from 201172540054_R03C01

description:
201172540054_R03C01_Grn.idat
201172540054_R03C01_Red.idat
Sample 377
whole blood sample


title: genomic DNA from 201172530038_R04C01

description:
201172530038_R04C01_Grn.idat
201172530038_R04C01_Red.idat
Sample 381
whole blood sample


title: genomic DNA from 201172540052_R03C01

description:
201172540052_R03C01_Grn.idat
201172540052_R03C01_Red.idat
Sample 376
whole blood sample


title: genomic DNA from 201172540052_R06C01

description:
201172540052_R06C01_Grn.idat
201172540052_R06C01_Red.idat
Sample 392
whole blood sample


title: genomic DNA from 201172540042_R03C01

description:
201172540042_R03C01_Grn.idat
201172540042_R03C01_Red.idat
Sample 375
whole blood sample


title: genomic DNA from 201172210059_R06C01

description:
201172210059_R06C01_Grn.idat
201172210059_R06C01_Red.idat
Sample 393
whole blood sample


title: genomic DNA from 201172540040_R03C01

description:
201172540040_R03C01_Grn.idat
201172540040_R03C01_Red.idat
Sample 374
whole blood sample


title: genomic DNA from 201172530058_R02C01

description:
201172530058_R02C01_Grn.idat
201172530058_R02C01_Red.idat
Sample 370
whole blood sample


title: genomic DNA from 201172540054_R02C01

description:
201172540054_R02C01_Grn.idat
201172540054_R02C01_Red.idat
Sample 369
whole blood sample


title: genomic DNA from 201172210059_R01C01

description:
201172210059_R01C01_Grn.idat
201172210059_R01C01_Red.idat
Sample 365
whole blood sample


title: genomic DNA from 201172540040_R02C01

description:
201172540040_R02C01_Grn.idat
201172540040_R02C01_Red.idat
Sample 367
whole blood sample


title: genomic DNA from 201172210059_R02C01

description:
201172210059_R02C01_Grn.idat
201172210059_R02C01_Red.idat
Sample 371
whole blood sample


title: genomic DNA from 201172540052_R02C01

description:
201172540052_R02C01_Grn.idat
201172540052_R02C01_Red.idat
Sample 368
whole blood sample


title: Mouse_heart_day5_transplantation_1

description: Gene expression data from heart tissue of transplantated mouse


title: genomic DNA from 201172540054_R01C01

description:
201172540054_R01C01_Grn.idat
201172540054_R01C01_Red.idat
Sample 364
whole blood sample


title: genomic DNA from 201172210003_R01C01

description:
201172210003_R01C01_Grn.idat
201172210003_R01C01_Red.idat
Sample 366
whole blood sample


title: genomic DNA from 201172540052_R01C01

description:
201172540052_R01C01_Grn.idat
201172540052_R01C01_Red.idat
Sample 363
whole blood sample


title: genomic DNA from 201172540042_R01C01

description:
201172540042_R01C01_Grn.idat
201172540042_R01C01_Red.idat
Sample 362
whole blood sample


title: genomic DNA from 201172530058_R03C01

description:
201172530058_R03C01_Grn.idat
201172530058_R03C01_Red.idat
Sample 378
whole blood sample


title: genomic DNA from 201172540040_R01C01

description:
201172540040_R01C01_Grn.idat
201172540040_R01C01_Red.idat
Sample 361
whole blood sample


title: genomic DNA from 201172220031_R08C01

description:
201172220031_R08C01_Grn.idat
201172220031_R08C01_Red.idat
Sample 360
whole blood sample


title: genomic DNA from 201172530029_R08C01

description:
201172530029_R08C01_Grn.idat
201172530029_R08C01_Red.idat
Sample 359
whole blood sample


title: genomic DNA from 201172530028_R08C01

description:
201172530028_R08C01_Grn.idat
201172530028_R08C01_Red.idat
Sample 358
whole blood sample


title: genomic DNA from 201172530038_R03C01

description:
201172530038_R03C01_Grn.idat
201172530038_R03C01_Red.idat
Sample 373
whole blood sample


title: genomic DNA from 201172210003_R02C01

description:
201172210003_R02C01_Grn.idat
201172210003_R02C01_Red.idat
Sample 372
whole blood sample


title: genomic DNA from 201172220022_R08C01

description:
201172220022_R08C01_Grn.idat
201172220022_R08C01_Red.idat
Sample 356
whole blood sample


title: genomic DNA from 201172210032_R07C01

description:
201172210032_R07C01_Grn.idat
201172210032_R07C01_Red.idat
Sample 352
whole blood sample


title: genomic DNA from 201172530003_R08C01

description:
201172530003_R08C01_Grn.idat
201172530003_R08C01_Red.idat
Sample 354
whole blood sample


title: genomic DNA from 201172220031_R07C01

description:
201172220031_R07C01_Grn.idat
201172220031_R07C01_Red.idat
Sample 351
whole blood sample


title: genomic DNA from 201172530024_R08C01

description:
201172530024_R08C01_Grn.idat
201172530024_R08C01_Red.idat
Sample 357
whole blood sample


title: genomic DNA from 201172210006_R08C01

description:
201172210006_R08C01_Grn.idat
201172210006_R08C01_Red.idat
Sample 355
whole blood sample


title: genomic DNA from 201172530028_R07C01

description:
201172530028_R07C01_Grn.idat
201172530028_R07C01_Red.idat
Sample 349
whole blood sample


title: genomic DNA from 201172530029_R07C01

description:
201172530029_R07C01_Grn.idat
201172530029_R07C01_Red.idat
Sample 350
whole blood sample


title: genomic DNA from 201172530007_R07C01

description:
201172530007_R07C01_Grn.idat
201172530007_R07C01_Red.idat
Sample 346
whole blood sample


title: genomic DNA from 201172220018_R07C01

description:
201172220018_R07C01_Grn.idat
201172220018_R07C01_Red.idat
Sample 347
whole blood sample


title: genomic DNA from 201172220031_R06C01

description:
201172220031_R06C01_Grn.idat
201172220031_R06C01_Red.idat
Sample 342
whole blood sample


title: genomic DNA from 201172530003_R07C01

description:
201172530003_R07C01_Grn.idat
201172530003_R07C01_Red.idat
Sample 344
whole blood sample


title: genomic DNA from 201172210006_R07C01

description:
201172210006_R07C01_Grn.idat
201172210006_R07C01_Red.idat
Sample 345
whole blood sample


title: genomic DNA from 201172210032_R06C01

description:
201172210032_R06C01_Grn.idat
201172210032_R06C01_Red.idat
Sample 343
whole blood sample


title: genomic DNA from 201172220022_R06C01

description:
201172220022_R06C01_Grn.idat
201172220022_R06C01_Red.idat
Sample 340
whole blood sample


title: genomic DNA from 201172530028_R06C01

description:
201172530028_R06C01_Grn.idat
201172530028_R06C01_Red.idat
Sample 341
whole blood sample


title: genomic DNA from 201172530007_R06C01

description:
201172530007_R06C01_Grn.idat
201172530007_R06C01_Red.idat
Sample 338
whole blood sample


title: genomic DNA from 201172220018_R06C01

description:
201172220018_R06C01_Grn.idat
201172220018_R06C01_Red.idat
Sample 339
whole blood sample


title: genomic DNA from 201172530003_R06C01

description:
201172530003_R06C01_Grn.idat
201172530003_R06C01_Red.idat
Sample 337
whole blood sample


title: genomic DNA from 201172220034_R05C01

description:
201172220034_R05C01_Grn.idat
201172220034_R05C01_Red.idat
Sample 336
whole blood sample


title: genomic DNA from 201172530001_R08C01

description:
201172530001_R08C01_Grn.idat
201172530001_R08C01_Red.idat
Sample 353
whole blood sample


title: genomic DNA from 201172210032_R05C01

description:
201172210032_R05C01_Grn.idat
201172210032_R05C01_Red.idat
Sample 335
whole blood sample


title: genomic DNA from 201172530007_R05C01

description:
201172530007_R05C01_Grn.idat
201172530007_R05C01_Red.idat
Sample 332
whole blood sample


title: genomic DNA from 201172530028_R05C01

description:
201172530028_R05C01_Grn.idat
201172530028_R05C01_Red.idat
Sample 334
whole blood sample


title: genomic DNA from 201172210006_R05C01

description:
201172210006_R05C01_Grn.idat
201172210006_R05C01_Red.idat
Sample 331
whole blood sample


title: genomic DNA from 201172530001_R05C01

description:
201172530001_R05C01_Grn.idat
201172530001_R05C01_Red.idat
Sample 329
whole blood sample


title: genomic DNA from 201172530024_R07C01

description:
201172530024_R07C01_Grn.idat
201172530024_R07C01_Red.idat
Sample 348
whole blood sample


title: genomic DNA from 201172530024_R05C01

description:
201172530024_R05C01_Grn.idat
201172530024_R05C01_Red.idat
Sample 333
whole blood sample


title: genomic DNA from 201172530001_R04C01

description:
201172530001_R04C01_Grn.idat
201172530001_R04C01_Red.idat
Sample 325
whole blood sample


title: genomic DNA from 201172530003_R05C01

description:
201172530003_R05C01_Grn.idat
201172530003_R05C01_Red.idat
Sample 330
whole blood sample


title: genomic DNA from 201172530028_R04C01

description:
201172530028_R04C01_Grn.idat
201172530028_R04C01_Red.idat
Sample 327
whole blood sample


title: genomic DNA from 201172530024_R04C01

description:
201172530024_R04C01_Grn.idat
201172530024_R04C01_Red.idat
Sample 326
whole blood sample


title: genomic DNA from 201172220031_R04C01

description:
201172220031_R04C01_Grn.idat
201172220031_R04C01_Red.idat
Sample 328
whole blood sample


title: genomic DNA from 201172220031_R03C01

description:
201172220031_R03C01_Grn.idat
201172220031_R03C01_Red.idat
Sample 324
whole blood sample


title: genomic DNA from 201172530029_R03C01

description:
201172530029_R03C01_Grn.idat
201172530029_R03C01_Red.idat
Sample 323
whole blood sample


title: genomic DNA from 201172530028_R03C01

description:
201172530028_R03C01_Grn.idat
201172530028_R03C01_Red.idat
Sample 322
whole blood sample


title: genomic DNA from 201172220022_R03C01

description:
201172220022_R03C01_Grn.idat
201172220022_R03C01_Red.idat
Sample 320
whole blood sample


title: genomic DNA from 201172530024_R03C01

description:
201172530024_R03C01_Grn.idat
201172530024_R03C01_Red.idat
Sample 321
whole blood sample


title: genomic DNA from 201172530001_R03C01

description:
201172530001_R03C01_Grn.idat
201172530001_R03C01_Red.idat
Sample 316
whole blood sample


title: genomic DNA from 201172530028_R02C01

description:
201172530028_R02C01_Grn.idat
201172530028_R02C01_Red.idat
Sample 312
whole blood sample


title: genomic DNA from 201172530003_R03C01

description:
201172530003_R03C01_Grn.idat
201172530003_R03C01_Red.idat
Sample 317
whole blood sample


title: genomic DNA from 201172210032_R02C01

description:
201172210032_R02C01_Grn.idat
201172210032_R02C01_Red.idat
Sample 315
whole blood sample


title: genomic DNA from 201172210006_R03C01

description:
201172210006_R03C01_Grn.idat
201172210006_R03C01_Red.idat
Sample 318
whole blood sample


title: genomic DNA from 201172220031_R02C01

description:
201172220031_R02C01_Grn.idat
201172220031_R02C01_Red.idat
Sample 314
whole blood sample


title: genomic DNA from 201172530024_R02C01

description:
201172530024_R02C01_Grn.idat
201172530024_R02C01_Red.idat
Sample 311
whole blood sample


title: genomic DNA from 201172530007_R02C01

description:
201172530007_R02C01_Grn.idat
201172530007_R02C01_Red.idat
Sample 310
whole blood sample


title: db/db HSC, biological rep2

description: microRNA expression in hematopoietic stem cells

value: bone marrow hematopoietic stem cells


title: genomic DNA from 201172530003_R02C01

description:
201172530003_R02C01_Grn.idat
201172530003_R02C01_Red.idat
Sample 309
whole blood sample


title: genomic DNA from 201172530001_R02C01

description:
201172530001_R02C01_Grn.idat
201172530001_R02C01_Red.idat
Sample 308
whole blood sample


title: genomic DNA from 201172220034_R01C01

description:
201172220034_R01C01_Grn.idat
201172220034_R01C01_Red.idat
Sample 307
whole blood sample


title: genomic DNA from 201172220031_R01C01

description:
201172220031_R01C01_Grn.idat
201172220031_R01C01_Red.idat
Sample 306
whole blood sample


title: genomic DNA from 201172220022_R01C01

description:
201172220022_R01C01_Grn.idat
201172220022_R01C01_Red.idat
Sample 303
whole blood sample


title: genomic DNA from 201172530007_R01C01

description:
201172530007_R01C01_Grn.idat
201172530007_R01C01_Red.idat
Sample 302
whole blood sample


title: genomic DNA from 201172530028_R01C01

description:
201172530028_R01C01_Grn.idat
201172530028_R01C01_Red.idat
Sample 304
whole blood sample


title: genomic DNA from 201172530029_R01C01

description:
201172530029_R01C01_Grn.idat
201172530029_R01C01_Red.idat
Sample 305
whole blood sample


title: genomic DNA from 201172540039_R08C01

description:
201172540039_R08C01_Grn.idat
201172540039_R08C01_Red.idat
Sample 298
whole blood sample


title: genomic DNA from 201172530003_R01C01

description:
201172530003_R01C01_Grn.idat
201172530003_R01C01_Red.idat
Sample 300
whole blood sample


title: genomic DNA from 201172210006_R01C01

description:
201172210006_R01C01_Grn.idat
201172210006_R01C01_Red.idat
Sample 301
whole blood sample


title: genomic DNA from 201172520007_R08C01

description:
201172520007_R08C01_Grn.idat
201172520007_R08C01_Red.idat
Sample 297
whole blood sample


title: genomic DNA from 201172530007_R03C01

description:
201172530007_R03C01_Grn.idat
201172530007_R03C01_Red.idat
Sample 319
whole blood sample


title: genomic DNA from 201172220042_R08C01

description:
201172220042_R08C01_Grn.idat
201172220042_R08C01_Red.idat
Sample 293
whole blood sample


title: genomic DNA from 201172220039_R08C01

description:
201172220039_R08C01_Grn.idat
201172220039_R08C01_Red.idat
Sample 292
whole blood sample


title: genomic DNA from 201172530001_R01C01

description:
201172530001_R01C01_Grn.idat
201172530001_R01C01_Red.idat
Sample 299
whole blood sample


title: genomic DNA from 201172540039_R07C01

description:
201172540039_R07C01_Grn.idat
201172540039_R07C01_Red.idat
Sample 291
whole blood sample


title: genomic DNA from 201172530029_R02C01

description:
201172530029_R02C01_Grn.idat
201172530029_R02C01_Red.idat
Sample 313
whole blood sample


title: genomic DNA from 201172540048_R08C01

description:
201172540048_R08C01_Grn.idat
201172540048_R08C01_Red.idat
Sample 295
whole blood sample


title: genomic DNA from 201172520007_R07C01

description:
201172520007_R07C01_Grn.idat
201172520007_R07C01_Red.idat
Sample 290
whole blood sample


title: genomic DNA from 201172220051_R08C01

description:
201172220051_R08C01_Grn.idat
201172220051_R08C01_Red.idat
Sample 296
whole blood sample


title: genomic DNA from 201172220039_R07C01

description:
201172220039_R07C01_Grn.idat
201172220039_R07C01_Red.idat
Sample 287
whole blood sample


title: genomic DNA from 201172550057_R07C01

description:
201172550057_R07C01_Grn.idat
201172550057_R07C01_Red.idat
Sample 289
whole blood sample


title: genomic DNA from 201172540038_R07C01

description:
201172540038_R07C01_Grn.idat
201172540038_R07C01_Red.idat
Sample 286
whole blood sample


title: genomic DNA from 201172540043_R08C01

description:
201172540043_R08C01_Grn.idat
201172540043_R08C01_Red.idat
Sample 294
whole blood sample


title: genomic DNA from 201172540039_R06C01

description:
201172540039_R06C01_Grn.idat
201172540039_R06C01_Red.idat
Sample 285
whole blood sample


title: genomic DNA from 201172550057_R06C01

description:
201172550057_R06C01_Grn.idat
201172550057_R06C01_Red.idat
Sample 283
whole blood sample


title: genomic DNA from 201172540060_R06C01

description:
201172540060_R06C01_Grn.idat
201172540060_R06C01_Red.idat
Sample 284
whole blood sample


title: genomic DNA from 201172540044_R07C01

description:
201172540044_R07C01_Grn.idat
201172540044_R07C01_Red.idat
Sample 288
whole blood sample


title: genomic DNA from 201172220051_R06C01

description:
201172220051_R06C01_Grn.idat
201172220051_R06C01_Red.idat
Sample 282
whole blood sample


title: genomic DNA from 201172520047_R06C01

description:
201172520047_R06C01_Grn.idat
201172520047_R06C01_Red.idat
Sample 281
whole blood sample


title: genomic DNA from 201172540039_R05C01

description:
201172540039_R05C01_Grn.idat
201172540039_R05C01_Red.idat
Sample 278
whole blood sample


title: genomic DNA from 201172550057_R05C01

description:
201172550057_R05C01_Grn.idat
201172550057_R05C01_Red.idat
Sample 277
whole blood sample


title: genomic DNA from 201172540043_R06C01

description:
201172540043_R06C01_Grn.idat
201172540043_R06C01_Red.idat
Sample 280
whole blood sample


title: genomic DNA from 201172540048_R05C01

description:
201172540048_R05C01_Grn.idat
201172540048_R05C01_Red.idat
Sample 275
whole blood sample


title: genomic DNA from 201172220051_R05C01

description:
201172220051_R05C01_Grn.idat
201172220051_R05C01_Red.idat
Sample 276
whole blood sample


title: genomic DNA from 201172540038_R05C01

description:
201172540038_R05C01_Grn.idat
201172540038_R05C01_Red.idat
Sample 272
whole blood sample


title: genomic DNA from 201172220042_R05C01

description:
201172220042_R05C01_Grn.idat
201172220042_R05C01_Red.idat
Sample 274
whole blood sample


title: genomic DNA from 201172540060_R04C01

description:
201172540060_R04C01_Grn.idat
201172540060_R04C01_Red.idat
Sample 270
whole blood sample


title: genomic DNA from 201172540039_R04C01

description:
201172540039_R04C01_Grn.idat
201172540039_R04C01_Red.idat
Sample 271
whole blood sample


title: genomic DNA from 201172220039_R05C01

description:
201172220039_R05C01_Grn.idat
201172220039_R05C01_Red.idat
Sample 273
whole blood sample


title: genomic DNA from 201172520047_R04C01

description:
201172520047_R04C01_Grn.idat
201172520047_R04C01_Red.idat
Sample 269
whole blood sample


title: genomic DNA from 201172540040_R05C01

description:
201172540040_R05C01_Grn.idat
201172540040_R05C01_Red.idat
Sample 386
whole blood sample


title: genomic DNA from 201172220042_R04C01

description:
201172220042_R04C01_Grn.idat
201172220042_R04C01_Red.idat
Sample 266
whole blood sample


title: genomic DNA from 201172220039_R04C01

description:
201172220039_R04C01_Grn.idat
201172220039_R04C01_Red.idat
Sample 265
whole blood sample


title: genomic DNA from 201172520007_R03C01

description:
201172520007_R03C01_Grn.idat
201172520007_R03C01_Red.idat
Sample 262
whole blood sample


title: genomic DNA from 201172540038_R04C01

description:
201172540038_R04C01_Grn.idat
201172540038_R04C01_Red.idat
Sample 264
whole blood sample


title: genomic DNA from 201172540043_R04C01

description:
201172540043_R04C01_Grn.idat
201172540043_R04C01_Red.idat
Sample 267
whole blood sample


title: genomic DNA from 201172540043_R03C01

description:
201172540043_R03C01_Grn.idat
201172540043_R03C01_Red.idat
Sample 257
whole blood sample


title: genomic DNA from 201172540044_R03C01

description:
201172540044_R03C01_Grn.idat
201172540044_R03C01_Red.idat
Sample 258
whole blood sample


title: genomic DNA from 201172540039_R03C01

description:
201172540039_R03C01_Grn.idat
201172540039_R03C01_Red.idat
Sample 263
whole blood sample


title: genomic DNA from 201172520047_R03C01

description:
201172520047_R03C01_Grn.idat
201172520047_R03C01_Red.idat
Sample 259
whole blood sample


title: genomic DNA from 201172520007_R02C01

description:
201172520007_R02C01_Grn.idat
201172520007_R02C01_Red.idat
Sample 253
whole blood sample


title: genomic DNA from 201172550057_R03C01

description:
201172550057_R03C01_Grn.idat
201172550057_R03C01_Red.idat
Sample 261
whole blood sample


title: genomic DNA from 201172220042_R03C01

description:
201172220042_R03C01_Grn.idat
201172220042_R03C01_Red.idat
Sample 256
whole blood sample


title: genomic DNA from 201172220039_R03C01

description:
201172220039_R03C01_Grn.idat
201172220039_R03C01_Red.idat
Sample 255
whole blood sample


title: genomic DNA from 201172220039_R06C01

description:
201172220039_R06C01_Grn.idat
201172220039_R06C01_Red.idat
Sample 279
whole blood sample


title: genomic DNA from 201172520047_R02C01

description:
201172520047_R02C01_Grn.idat
201172520047_R02C01_Red.idat
Sample 251
whole blood sample


title: genomic DNA from 201172540043_R02C01

description:
201172540043_R02C01_Grn.idat
201172540043_R02C01_Red.idat
Sample 249
whole blood sample


title: genomic DNA from 201172540044_R02C01

description:
201172540044_R02C01_Grn.idat
201172540044_R02C01_Red.idat
Sample 250
whole blood sample


title: genomic DNA from 201172220042_R02C01

description:
201172220042_R02C01_Grn.idat
201172220042_R02C01_Red.idat
Sample 248
whole blood sample


title: genomic DNA from 201172220039_R02C01

description:
201172220039_R02C01_Grn.idat
201172220039_R02C01_Red.idat
Sample 247
whole blood sample


title: genomic DNA from 201172540060_R01C01

description:
201172540060_R01C01_Grn.idat
201172540060_R01C01_Red.idat
Sample 243
whole blood sample


title: genomic DNA from 201172540039_R01C01

description:
201172540039_R01C01_Grn.idat
201172540039_R01C01_Red.idat
Sample 245
whole blood sample


title: genomic DNA from 201172550057_R01C01

description:
201172550057_R01C01_Grn.idat
201172550057_R01C01_Red.idat
Sample 242
whole blood sample


title: genomic DNA from 201172520007_R01C01

description:
201172520007_R01C01_Grn.idat
201172520007_R01C01_Red.idat
Sample 244
whole blood sample


title: genomic DNA from 201172540044_R04C01

description:
201172540044_R04C01_Grn.idat
201172540044_R04C01_Red.idat
Sample 268
whole blood sample


title: genomic DNA from 201172520047_R01C01

description:
201172520047_R01C01_Grn.idat
201172520047_R01C01_Red.idat
Sample 239
whole blood sample


title: genomic DNA from 201172220051_R03C01

description:
201172220051_R03C01_Grn.idat
201172220051_R03C01_Red.idat
Sample 260
whole blood sample


title: genomic DNA from 201172220039_R01C01

description:
201172220039_R01C01_Grn.idat
201172220039_R01C01_Red.idat
Sample 238
whole blood sample


title: genomic DNA from 201172220051_R01C01

description:
201172220051_R01C01_Grn.idat
201172220051_R01C01_Red.idat
Sample 241
whole blood sample


title: genomic DNA from 201172540048_R01C01

description:
201172540048_R01C01_Grn.idat
201172540048_R01C01_Red.idat
Sample 240
whole blood sample


title: genomic DNA from 201172540038_R03C01

description:
201172540038_R03C01_Grn.idat
201172540038_R03C01_Red.idat
Sample 254
whole blood sample


title: genomic DNA from 201172540037_R08C01

description:
201172540037_R08C01_Grn.idat
201172540037_R08C01_Red.idat
Sample 236
whole blood sample


title: genomic DNA from 201172220007_R08C01

description:
201172220007_R08C01_Grn.idat
201172220007_R08C01_Red.idat
Sample 228
whole blood sample


title: genomic DNA from 201172220021_R08C01

description:
201172220021_R08C01_Grn.idat
201172220021_R08C01_Red.idat
Sample 233
whole blood sample


title: genomic DNA from 201172550009_R08C01

description:
201172550009_R08C01_Grn.idat
201172550009_R08C01_Red.idat
Sample 230
whole blood sample


title: genomic DNA from 201172220017_R08C01

description:
201172220017_R08C01_Grn.idat
201172220017_R08C01_Red.idat
Sample 231
whole blood sample


title: genomic DNA from 201172220019_R08C01

description:
201172220019_R08C01_Grn.idat
201172220019_R08C01_Red.idat
Sample 232
whole blood sample


title: genomic DNA from 201172520024_R08C01

description:
201172520024_R08C01_Grn.idat
201172520024_R08C01_Red.idat
Sample 234
whole blood sample


title: genomic DNA from 201172520024_R07C01

description:
201172520024_R07C01_Grn.idat
201172520024_R07C01_Red.idat
Sample 227
whole blood sample


title: genomic DNA from 201172520023_R07C01

description:
201172520023_R07C01_Grn.idat
201172520023_R07C01_Red.idat
Sample 226
whole blood sample


title: genomic DNA from 201172220021_R07C01

description:
201172220021_R07C01_Grn.idat
201172220021_R07C01_Red.idat
Sample 225
whole blood sample


title: genomic DNA from 201172540038_R02C01

description:
201172540038_R02C01_Grn.idat
201172540038_R02C01_Red.idat
Sample 246
whole blood sample


title: genomic DNA from 201172550009_R07C01

description:
201172550009_R07C01_Grn.idat
201172550009_R07C01_Red.idat
Sample 223
whole blood sample


title: genomic DNA from 201172550008_R07C01

description:
201172550008_R07C01_Grn.idat
201172550008_R07C01_Red.idat
Sample 222
whole blood sample


title: genomic DNA from 201172520023_R06C01

description:
201172520023_R06C01_Grn.idat
201172520023_R06C01_Red.idat
Sample 217
whole blood sample


title: genomic DNA from 201172520024_R06C01

description:
201172520024_R06C01_Grn.idat
201172520024_R06C01_Red.idat
Sample 218
whole blood sample


title: genomic DNA from 201172220019_R06C01

description:
201172220019_R06C01_Grn.idat
201172220019_R06C01_Red.idat
Sample 216
whole blood sample


title: genomic DNA from 201172220033_R06C01

description:
201172220033_R06C01_Grn.idat
201172220033_R06C01_Red.idat
Sample 219
whole blood sample


title: genomic DNA from 201172220007_R07C01

description:
201172220007_R07C01_Grn.idat
201172220007_R07C01_Red.idat
Sample 221
whole blood sample


title: genomic DNA from 201172540038_R01C01

description:
201172540038_R01C01_Grn.idat
201172540038_R01C01_Red.idat
Sample 237
whole blood sample


title: genomic DNA from 201172550015_R06C01

description:
201172550015_R06C01_Grn.idat
201172550015_R06C01_Red.idat
Sample 215
whole blood sample


title: genomic DNA from 201172550009_R06C01

description:
201172550009_R06C01_Grn.idat
201172550009_R06C01_Red.idat
Sample 214
whole blood sample


title: genomic DNA from 201172540036_R08C01

description:
201172540036_R08C01_Grn.idat
201172540036_R08C01_Red.idat
Sample 235
whole blood sample


title: genomic DNA from 201172220007_R06C01

description:
201172220007_R06C01_Grn.idat
201172220007_R06C01_Red.idat
Sample 213
whole blood sample


title: genomic DNA from 201172220033_R05C01

description:
201172220033_R05C01_Grn.idat
201172220033_R05C01_Red.idat
Sample 211
whole blood sample


title: genomic DNA from 201172550008_R08C01

description:
201172550008_R08C01_Grn.idat
201172550008_R08C01_Red.idat
Sample 229
whole blood sample


title: genomic DNA from 201172520023_R05C01

description:
201172520023_R05C01_Grn.idat
201172520023_R05C01_Red.idat
Sample 209
whole blood sample


title: genomic DNA from 201172520024_R05C01

description:
201172520024_R05C01_Grn.idat
201172520024_R05C01_Red.idat
Sample 210
whole blood sample


title: genomic DNA from 201172540036_R04C01

description:
201172540036_R04C01_Grn.idat
201172540036_R04C01_Red.idat
Sample 202
whole blood sample


title: genomic DNA from 201172220021_R05C01

description:
201172220021_R05C01_Grn.idat
201172220021_R05C01_Red.idat
Sample 208
whole blood sample


title: genomic DNA from 201172220007_R05C01

description:
201172220007_R05C01_Grn.idat
201172220007_R05C01_Red.idat
Sample 204
whole blood sample


title: genomic DNA from 201172550009_R05C01

description:
201172550009_R05C01_Grn.idat
201172550009_R05C01_Red.idat
Sample 206
whole blood sample


title: genomic DNA from 201172540037_R04C01

description:
201172540037_R04C01_Grn.idat
201172540037_R04C01_Red.idat
Sample 203
whole blood sample


title: genomic DNA from 201172540036_R06C01

description:
201172540036_R06C01_Grn.idat
201172540036_R06C01_Red.idat
Sample 220
whole blood sample


title: genomic DNA from 201172220021_R04C01

description:
201172220021_R04C01_Grn.idat
201172220021_R04C01_Red.idat
Sample 201
whole blood sample


title: genomic DNA from 201172550015_R04C01

description:
201172550015_R04C01_Grn.idat
201172550015_R04C01_Red.idat
Sample 199
whole blood sample


title: genomic DNA from 201172220019_R04C01

description:
201172220019_R04C01_Grn.idat
201172220019_R04C01_Red.idat
Sample 200
whole blood sample


title: genomic DNA from 201172220019_R07C01

description:
201172220019_R07C01_Grn.idat
201172220019_R07C01_Red.idat
Sample 224
whole blood sample


title: genomic DNA from 201172540036_R02C01

description:
201172540036_R02C01_Grn.idat
201172540036_R02C01_Red.idat
Sample 188
whole blood sample


title: genomic DNA from 201172550015_R03C01

description:
201172550015_R03C01_Grn.idat
201172550015_R03C01_Red.idat
Sample 192
whole blood sample


title: genomic DNA from 201172220017_R03C01

description:
201172220017_R03C01_Grn.idat
201172220017_R03C01_Red.idat
Sample 193
whole blood sample


title: genomic DNA from 201172550008_R03C01

description:
201172550008_R03C01_Grn.idat
201172550008_R03C01_Red.idat
Sample 190
whole blood sample


title: genomic DNA from 201172220021_R03C01

description:
201172220021_R03C01_Grn.idat
201172220021_R03C01_Red.idat
Sample 194
whole blood sample


title: genomic DNA from 201172220017_R05C01

description:
201172220017_R05C01_Grn.idat
201172220017_R05C01_Red.idat
Sample 207
whole blood sample


title: genomic DNA from 201172220033_R02C01

description:
201172220033_R02C01_Grn.idat
201172220033_R02C01_Red.idat
Sample 187
whole blood sample


title: genomic DNA from 201172520023_R03C01

description:
201172520023_R03C01_Grn.idat
201172520023_R03C01_Red.idat
Sample 195
whole blood sample


title: genomic DNA from 201172540037_R02C01

description:
201172540037_R02C01_Grn.idat
201172540037_R02C01_Red.idat
Sample 189
whole blood sample


title: genomic DNA from 201172550009_R03C01

description:
201172550009_R03C01_Grn.idat
201172550009_R03C01_Red.idat
Sample 191
whole blood sample


title: genomic DNA from 201172220007_R02C01

description:
201172220007_R02C01_Grn.idat
201172220007_R02C01_Red.idat
Sample 183
whole blood sample


title: genomic DNA from 201172220007_R04C01

description:
201172220007_R04C01_Grn.idat
201172220007_R04C01_Red.idat
Sample 197
whole blood sample


title: genomic DNA from 201172540037_R05C01

description:
201172540037_R05C01_Grn.idat
201172540037_R05C01_Red.idat
Sample 212
whole blood sample


title: genomic DNA from 201172550009_R04C01

description:
201172550009_R04C01_Grn.idat
201172550009_R04C01_Red.idat
Sample 198
whole blood sample


title: genomic DNA from 201172550015_R02C01

description:
201172550015_R02C01_Grn.idat
201172550015_R02C01_Red.idat
Sample 185
whole blood sample


title: genomic DNA from 201172540036_R03C01

description:
201172540036_R03C01_Grn.idat
201172540036_R03C01_Red.idat
Sample 196
whole blood sample


title: genomic DNA from 201172550008_R02C01

description:
201172550008_R02C01_Grn.idat
201172550008_R02C01_Red.idat
Sample 184
whole blood sample


title: genomic DNA from 201172550008_R05C01

description:
201172550008_R05C01_Grn.idat
201172550008_R05C01_Red.idat
Sample 205
whole blood sample


title: genomic DNA from 201172520023_R01C01

description:
201172520023_R01C01_Grn.idat
201172520023_R01C01_Red.idat
Sample 179
whole blood sample


title: genomic DNA from 201172220019_R01C01

description:
201172220019_R01C01_Grn.idat
201172220019_R01C01_Red.idat
Sample 177
whole blood sample


title: genomic DNA from 201172540037_R01C01

description:
201172540037_R01C01_Grn.idat
201172540037_R01C01_Red.idat
Sample 182
whole blood sample


title: genomic DNA from 201172220033_R01C01

description:
201172220033_R01C01_Grn.idat
201172220033_R01C01_Red.idat
Sample 180
whole blood sample


title: genomic DNA from 201172550008_R01C01

description:
201172550008_R01C01_Grn.idat
201172550008_R01C01_Red.idat
Sample 174
whole blood sample


title: genomic DNA from 201172220021_R01C01

description:
201172220021_R01C01_Grn.idat
201172220021_R01C01_Red.idat
Sample 178
whole blood sample


title: genomic DNA from 201172540036_R01C01

description:
201172540036_R01C01_Grn.idat
201172540036_R01C01_Red.idat
Sample 181
whole blood sample


title: genomic DNA from 201172220053_R08C01

description:
201172220053_R08C01_Grn.idat
201172220053_R08C01_Red.idat
Sample 173
whole blood sample


title: genomic DNA from 201172550015_R01C01

description:
201172550015_R01C01_Grn.idat
201172550015_R01C01_Red.idat
Sample 176
whole blood sample


title: genomic DNA from 201172550009_R01C01

description:
201172550009_R01C01_Grn.idat
201172550009_R01C01_Red.idat
Sample 175
whole blood sample


title: genomic DNA from 201172220019_R02C01

description:
201172220019_R02C01_Grn.idat
201172220019_R02C01_Red.idat
Sample 186
whole blood sample


title: genomic DNA from 201172220046_R08C01

description:
201172220046_R08C01_Grn.idat
201172220046_R08C01_Red.idat
Sample 172
whole blood sample


title: genomic DNA from 201172220032_R08C01

description:
201172220032_R08C01_Grn.idat
201172220032_R08C01_Red.idat
Sample 171
whole blood sample


title: genomic DNA from 201172540058_R08C01

description:
201172540058_R08C01_Grn.idat
201172540058_R08C01_Red.idat
Sample 170
whole blood sample


title: genomic DNA from 201134840069_R07C01

description:
201134840069_R07C01_Grn.idat
201134840069_R07C01_Red.idat
Sample 164
whole blood sample


title: genomic DNA from 201172220032_R07C01

description:
201172220032_R07C01_Grn.idat
201172220032_R07C01_Red.idat
Sample 165
whole blood sample


title: genomic DNA from 201172220053_R07C01

description:
201172220053_R07C01_Grn.idat
201172220053_R07C01_Red.idat
Sample 166
whole blood sample


title: genomic DNA from 201172520052_R08C01

description:
201172520052_R08C01_Grn.idat
201172520052_R08C01_Red.idat
Sample 168
whole blood sample


title: genomic DNA from 201172540058_R07C01

description:
201172540058_R07C01_Grn.idat
201172540058_R07C01_Red.idat
Sample 163
whole blood sample


title: genomic DNA from 201172550049_R08C01

description:
201172550049_R08C01_Grn.idat
201172550049_R08C01_Red.idat
Sample 167
whole blood sample


title: genomic DNA from 201172220032_R06C01

description:
201172220032_R06C01_Grn.idat
201172220032_R06C01_Red.idat
Sample 160
whole blood sample


title: genomic DNA from 201172220032_R05C01

description:
201172220032_R05C01_Grn.idat
201172220032_R05C01_Red.idat
Sample 155
whole blood sample


title: genomic DNA from 201172520053_R06C01

description:
201172520053_R06C01_Grn.idat
201172520053_R06C01_Red.idat
Sample 157
whole blood sample


title: genomic DNA from 201172220046_R05C01

description:
201172220046_R05C01_Grn.idat
201172220046_R05C01_Red.idat
Sample 156
whole blood sample


title: genomic DNA from 201172220053_R06C01

description:
201172220053_R06C01_Grn.idat
201172220053_R06C01_Red.idat
Sample 162
whole blood sample


title: genomic DNA from 201134840080_R05C01

description:
201134840080_R05C01_Grn.idat
201134840080_R05C01_Red.idat
Sample 153
whole blood sample


title: genomic DNA from 201134840084_R05C01

description:
201134840084_R05C01_Grn.idat
201134840084_R05C01_Red.idat
Sample 154
whole blood sample


title: genomic DNA from 201134840080_R06C01

description:
201134840080_R06C01_Grn.idat
201134840080_R06C01_Red.idat
Sample 158
whole blood sample


title: genomic DNA from 201134840069_R05C01

description:
201134840069_R05C01_Grn.idat
201134840069_R05C01_Red.idat
Sample 152
whole blood sample


title: genomic DNA from 201134840084_R04C01

description:
201134840084_R04C01_Grn.idat
201134840084_R04C01_Red.idat
Sample 148
whole blood sample


title: genomic DNA from 201134840080_R04C01

description:
201134840080_R04C01_Grn.idat
201134840080_R04C01_Red.idat
Sample 147
whole blood sample


title: genomic DNA from 201172520052_R05C01

description:
201172520052_R05C01_Grn.idat
201172520052_R05C01_Red.idat
Sample 151
whole blood sample


title: genomic DNA from 201134840076_R04C01

description:
201134840076_R04C01_Grn.idat
201134840076_R04C01_Red.idat
Sample 146
whole blood sample


title: genomic DNA from 201172220053_R04C01

description:
201172220053_R04C01_Grn.idat
201172220053_R04C01_Red.idat
Sample 150
whole blood sample


title: genomic DNA from 201172540058_R04C01

description:
201172540058_R04C01_Grn.idat
201172540058_R04C01_Red.idat
Sample 145
whole blood sample


title: genomic DNA from 201172520052_R04C01

description:
201172520052_R04C01_Grn.idat
201172520052_R04C01_Red.idat
Sample 144
whole blood sample


title: genomic DNA from 201172520054_R08C01

description:
201172520054_R08C01_Grn.idat
201172520054_R08C01_Red.idat
Sample 169
whole blood sample


title: genomic DNA from 201172550049_R04C01

description:
201172550049_R04C01_Grn.idat
201172550049_R04C01_Red.idat
Sample 143
whole blood sample


title: genomic DNA from 201172220053_R03C01

description:
201172220053_R03C01_Grn.idat
201172220053_R03C01_Red.idat
Sample 142
whole blood sample


title: genomic DNA from 201172220046_R06C01

description:
201172220046_R06C01_Grn.idat
201172220046_R06C01_Red.idat
Sample 161
whole blood sample


title: genomic DNA from 201134840084_R06C01

description:
201134840084_R06C01_Grn.idat
201134840084_R06C01_Red.idat
Sample 159
whole blood sample


title: genomic DNA from 201172220032_R03C01

description:
201172220032_R03C01_Grn.idat
201172220032_R03C01_Red.idat
Sample 140
whole blood sample


title: genomic DNA from 201172220046_R03C01

description:
201172220046_R03C01_Grn.idat
201172220046_R03C01_Red.idat
Sample 141
whole blood sample


title: genomic DNA from 201172520053_R03C01

description:
201172520053_R03C01_Grn.idat
201172520053_R03C01_Red.idat
Sample 135
whole blood sample


title: genomic DNA from 201134840084_R03C01

description:
201134840084_R03C01_Grn.idat
201134840084_R03C01_Red.idat
Sample 139
whole blood sample


title: genomic DNA from 201134840080_R03C01

description:
201134840080_R03C01_Grn.idat
201134840080_R03C01_Red.idat
Sample 138
whole blood sample


title: genomic DNA from 201172520054_R03C01

description:
201172520054_R03C01_Grn.idat
201172520054_R03C01_Red.idat
Sample 136
whole blood sample


title: genomic DNA from 201172220046_R04C01

description:
201172220046_R04C01_Grn.idat
201172220046_R04C01_Red.idat
Sample 149
whole blood sample


title: genomic DNA from 201172550057_R02C01

description:
201172550057_R02C01_Grn.idat
201172550057_R02C01_Red.idat
Sample 252
whole blood sample


title: genomic DNA from 201172540058_R03C01

description:
201172540058_R03C01_Grn.idat
201172540058_R03C01_Red.idat
Sample 137
whole blood sample


title: genomic DNA from 201134840084_R02C01

description:
201134840084_R02C01_Grn.idat
201134840084_R02C01_Red.idat
Sample 132
whole blood sample


title: genomic DNA from 201172520054_R02C01

description:
201172520054_R02C01_Grn.idat
201172520054_R02C01_Red.idat
Sample 130
whole blood sample


title: genomic DNA from 201172520052_R03C01

description:
201172520052_R03C01_Grn.idat
201172520052_R03C01_Red.idat
Sample 134
whole blood sample


title: genomic DNA from 201134840080_R02C01

description:
201134840080_R02C01_Grn.idat
201134840080_R02C01_Red.idat
Sample 131
whole blood sample


title: genomic DNA from 201172520053_R02C01

description:
201172520053_R02C01_Grn.idat
201172520053_R02C01_Red.idat
Sample 129
whole blood sample


title: genomic DNA from 201134840076_R01C01

description:
201134840076_R01C01_Grn.idat
201134840076_R01C01_Red.idat
Sample 125
whole blood sample


title: genomic DNA from 201172220046_R02C01

description:
201172220046_R02C01_Grn.idat
201172220046_R02C01_Red.idat
Sample 133
whole blood sample


title: genomic DNA from 201172540058_R01C01

description:
201172540058_R01C01_Grn.idat
201172540058_R01C01_Red.idat
Sample 124
whole blood sample


title: genomic DNA from 201172220046_R01C01

description:
201172220046_R01C01_Grn.idat
201172220046_R01C01_Red.idat
Sample 127
whole blood sample


title: genomic DNA from 201172520052_R02C01

description:
201172520052_R02C01_Grn.idat
201172520052_R02C01_Red.idat
Sample 128
whole blood sample


title: genomic DNA from 201134840080_R01C01

description:
201134840080_R01C01_Grn.idat
201134840080_R01C01_Red.idat
Sample 126
whole blood sample


title: genomic DNA from 201172520054_R01C01

description:
201172520054_R01C01_Grn.idat
201172520054_R01C01_Red.idat
Sample 123
whole blood sample


title: genomic DNA from 201172220037_R08C01

description:
201172220037_R08C01_Grn.idat
201172220037_R08C01_Red.idat
Sample 121
whole blood sample


title: genomic DNA from 201172540046_R07C01

description:
201172540046_R07C01_Grn.idat
201172540046_R07C01_Red.idat
Sample 116
whole blood sample


title: genomic DNA from 201172550017_R08C01

description:
201172550017_R08C01_Grn.idat
201172550017_R08C01_Red.idat
Sample 119
whole blood sample


title: genomic DNA from 201172540034_R07C01

description:
201172540034_R07C01_Grn.idat
201172540034_R07C01_Red.idat
Sample 114
whole blood sample


title: genomic DNA from 201172520052_R01C01

description:
201172520052_R01C01_Grn.idat
201172520052_R01C01_Red.idat
Sample 122
whole blood sample


title: genomic DNA from 201172550022_R08C01

description:
201172550022_R08C01_Grn.idat
201172550022_R08C01_Red.idat
Sample 120
whole blood sample


title: genomic DNA from 201172540032_R07C01

description:
201172540032_R07C01_Grn.idat
201172540032_R07C01_Red.idat
Sample 113
whole blood sample


title: genomic DNA from 201172220003_R08C01

description:
201172220003_R08C01_Grn.idat
201172220003_R08C01_Red.idat
Sample 118
whole blood sample


title: genomic DNA from 201172220024_R07C01

description:
201172220024_R07C01_Grn.idat
201172220024_R07C01_Red.idat
Sample 112
whole blood sample


title: genomic DNA from 201172520035_R07C01

description:
201172520035_R07C01_Grn.idat
201172520035_R07C01_Red.idat
Sample 115
whole blood sample


title: genomic DNA from 201172550022_R07C01

description:
201172550022_R07C01_Grn.idat
201172550022_R07C01_Red.idat
Sample 111
whole blood sample


title: genomic DNA from 201172220001_R07C01

description:
201172220001_R07C01_Grn.idat
201172220001_R07C01_Red.idat
Sample 107
whole blood sample


title: genomic DNA from 201172220001_R08C01

description:
201172220001_R08C01_Grn.idat
201172220001_R08C01_Red.idat
Sample 117
whole blood sample


title: genomic DNA from 201172550016_R07C01

description:
201172550016_R07C01_Grn.idat
201172550016_R07C01_Red.idat
Sample 109
whole blood sample


title: genomic DNA from 201172540034_R06C01

description:
201172540034_R06C01_Grn.idat
201172540034_R06C01_Red.idat
Sample 103
whole blood sample


title: genomic DNA from 201172550022_R06C01

description:
201172550022_R06C01_Grn.idat
201172550022_R06C01_Red.idat
Sample 102
whole blood sample


title: genomic DNA from 201172550017_R07C01

description:
201172550017_R07C01_Grn.idat
201172550017_R07C01_Red.idat
Sample 110
whole blood sample


title: genomic DNA from 201172520035_R05C01

description:
201172520035_R05C01_Grn.idat
201172520035_R05C01_Red.idat
Sample 96
whole blood sample


title: genomic DNA from 201172540034_R05C01

description:
201172540034_R05C01_Grn.idat
201172540034_R05C01_Red.idat
Sample 95
whole blood sample


title: genomic DNA from 201172220006_R07C01

description:
201172220006_R07C01_Grn.idat
201172220006_R07C01_Red.idat
Sample 108
whole blood sample


title: genomic DNA from 201172540046_R06C01

description:
201172540046_R06C01_Grn.idat
201172540046_R06C01_Red.idat
Sample 106
whole blood sample


title: genomic DNA from 201172220037_R06C01

description:
201172220037_R06C01_Grn.idat
201172220037_R06C01_Red.idat
Sample 105
whole blood sample


title: genomic DNA from 201172520035_R06C01

description:
201172520035_R06C01_Grn.idat
201172520035_R06C01_Red.idat
Sample 104
whole blood sample


title: genomic DNA from 201172220006_R05C01

description:
201172220006_R05C01_Grn.idat
201172220006_R05C01_Red.idat
Sample 92
whole blood sample


title: genomic DNA from 201172220001_R06C01

description:
201172220001_R06C01_Grn.idat
201172220001_R06C01_Red.idat
Sample 99
whole blood sample


title: genomic DNA from 201172550016_R06C01

description:
201172550016_R06C01_Grn.idat
201172550016_R06C01_Red.idat
Sample 101
whole blood sample


title: genomic DNA from 201172540032_R05C01

description:
201172540032_R05C01_Grn.idat
201172540032_R05C01_Red.idat
Sample 94
whole blood sample


title: genomic DNA from 201172540046_R05C01

description:
201172540046_R05C01_Grn.idat
201172540046_R05C01_Red.idat
Sample 98
whole blood sample


title: genomic DNA from 201172220037_R05C01

description:
201172220037_R05C01_Grn.idat
201172220037_R05C01_Red.idat
Sample 97
whole blood sample


title: genomic DNA from 201172540046_R04C01

description:
201172540046_R04C01_Grn.idat
201172540046_R04C01_Red.idat
Sample 89
whole blood sample


title: genomic DNA from 201172220001_R05C01

description:
201172220001_R05C01_Grn.idat
201172220001_R05C01_Red.idat
Sample 90
whole blood sample