title: whole blood taken from sample 6772

description: whole blood taken from sample 6772


title: whole blood taken from sample 7192

status: Public on Jan 15 2018

type: genomic

city: Exeter

first: Jonathan

last: Mill

address: RILD Building, RD&E Hospital

department: Medical School

country: United Kingdom

institute: University of Exeter

description: whole blood taken from sample 7192

hyb_protocol: Samples were processed according to the Illumina Infinium HumanMethylation450K BeadChip (Illumina) protocol with the exception that 7ul of bisulfite treated material was input into the whole genome amplicifaction reaction instead of 4ul.

scan_protocol: Samples were assessed using the Illumina Infinium HumanMethylation450K BeadChip (Illumina) using a Illumina iScan System (Illumina).

data_processing:
Data was imported using the R package methylumi methylumIDAT function. Data was then  pre-processed in the R package wateRmelon using the pfilter and dasen functions.
Average Beta or normalized (provide the normalization method) Average Beta

label: Cy5 and Cy3

molecule: genomic DNA

organism: Homo sapiens

label_protocol: 500 ng DNA from each sample was sodium bisulfite-treated using the EZ-96 DNA Methylation-Gol Kit  (Zymo Research) according to the manufacturer’s standard protocol.

extract_protocol: Genomic DNA was extracted from frozen whole blood samples using a standard cell lysis, proteinase K digestion, phenol/chloroform, ethanol precipitation method.

tag: familyid

tag: twinid

tag: gender

value: M

tag: zygosity

value: DZ


title: whole blood taken from sample 6762

description: whole blood taken from sample 6762

value: MZ


title: whole blood taken from sample 7111

description: whole blood taken from sample 7111


title: whole blood taken from sample 7112

description: whole blood taken from sample 7112


title: whole blood taken from sample 6741

description: whole blood taken from sample 6741

value: F


title: whole blood taken from sample 7182

description: whole blood taken from sample 7182


title: whole blood taken from sample 7142

description: whole blood taken from sample 7142


title: whole blood taken from sample 7161

description: whole blood taken from sample 7161


title: whole blood taken from sample 7022

description: whole blood taken from sample 7022


title: whole blood taken from sample 7141

description: whole blood taken from sample 7141


title: whole blood taken from sample 7162

description: whole blood taken from sample 7162


title: whole blood taken from sample 7181

description: whole blood taken from sample 7181


title: whole blood taken from sample 7002

description: whole blood taken from sample 7002


title: whole blood taken from sample 6712

description: whole blood taken from sample 6712


title: whole blood taken from sample 7001

description: whole blood taken from sample 7001


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description: whole blood taken from sample 7021


title: whole blood taken from sample 6752

description: whole blood taken from sample 6752


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description: whole blood taken from sample 7152


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description: whole blood taken from sample 6602


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description: whole blood taken from sample 6202


title: whole blood taken from sample 6201

description: whole blood taken from sample 6201


title: whole blood taken from sample 6222

description: whole blood taken from sample 6222


title: whole blood taken from sample 5961

description: whole blood taken from sample 5961


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description: whole blood taken from sample 6702


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description: whole blood taken from sample 6981


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description: whole blood taken from sample 6701


title: whole blood taken from sample 6901

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title: whole blood taken from sample 6192

description: whole blood taken from sample 6192


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description: whole blood taken from sample 5962


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description: whole blood taken from sample 5931


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description: whole blood taken from sample 5912


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description: whole blood taken from sample 6982


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description: whole blood taken from sample 6711


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description: whole blood taken from sample 5862


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description: whole blood taken from sample 6811


title: whole blood taken from sample 7311

description: whole blood taken from sample 7311


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description: whole blood taken from sample 6462


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description: whole blood taken from sample 6392


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description: whole blood taken from sample 6432


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title: whole blood taken from sample 7341

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description: whole blood taken from sample 6372


title: whole blood taken from sample 6471

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description: whole blood taken from sample 6031


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description: whole blood taken from sample 7342


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description: whole blood taken from sample 5731


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description: whole blood taken from sample 5702


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description: whole blood taken from sample 6092


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description: whole blood taken from sample 5741


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description: whole blood taken from sample 5691


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description: whole blood taken from sample 5891


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description: whole blood taken from sample 5942


title: whole blood taken from sample 5892

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description: whole blood taken from sample 5611


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description: whole blood taken from sample 5801


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description: whole blood taken from sample 5882


title: whole blood taken from sample 5631

description: whole blood taken from sample 5631


title: whole blood taken from sample 5922

description: whole blood taken from sample 5922


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description: whole blood taken from sample 5721


title: whole blood taken from sample 5722

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description: whole blood taken from sample 5802


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description: whole blood taken from sample 5941


title: whole blood taken from sample 5571

description: whole blood taken from sample 5571


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description: whole blood taken from sample 5921


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description: whole blood taken from sample 5662


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description: whole blood taken from sample 5551


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description: whole blood taken from sample 5152


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description: whole blood taken from sample 5572


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description: whole blood taken from sample 5552


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description: whole blood taken from sample 5062


title: whole blood taken from sample 5112

description: whole blood taken from sample 5112


title: whole blood taken from sample 5061

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description: whole blood taken from sample 5021


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description: whole blood taken from sample 5111


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description: whole blood taken from sample 5022


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description: whole blood taken from sample 4981


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description: whole blood taken from sample 5041


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description: whole blood taken from sample 5071


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description: whole blood taken from sample 4972


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description: whole blood taken from sample 5082


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description: whole blood taken from sample 4881


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description: whole blood taken from sample 4982


title: whole blood taken from sample 4992

description: whole blood taken from sample 4992


title: whole blood taken from sample 4891

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description: whole blood taken from sample 4971


title: whole blood taken from sample 4762

description: whole blood taken from sample 4762


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description: whole blood taken from sample 4712


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title: whole blood taken from sample 4991

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description: whole blood taken from sample 4832


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description: whole blood taken from sample 4701


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title: whole blood taken from sample 4661

description: whole blood taken from sample 4661


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description: whole blood taken from sample 4821


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description: whole blood taken from sample 4801


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description: whole blood taken from sample 4612


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description: whole blood taken from sample 4562


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description: whole blood taken from sample 4791


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description: whole blood taken from sample 4602


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description: whole blood taken from sample 4571


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description: whole blood taken from sample 4572


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title: whole blood taken from sample 4632

description: whole blood taken from sample 4632


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description: whole blood taken from sample 4302


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description: whole blood taken from sample 4421


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description: whole blood taken from sample 4532


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description: whole blood taken from sample 4552


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description: whole blood taken from sample 4531


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description: whole blood taken from sample 4292


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description: whole blood taken from sample 4702


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description: whole blood taken from sample 4422


title: whole blood taken from sample 4481

description: whole blood taken from sample 4481


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description: whole blood taken from sample 4281


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description: whole blood taken from sample 4301


title: whole blood taken from sample 4621

description: whole blood taken from sample 4621


title: whole blood taken from sample 4722

description: whole blood taken from sample 4722


title: whole blood taken from sample 4502

description: whole blood taken from sample 4502


title: whole blood taken from sample 4482

description: whole blood taken from sample 4482


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title: whole blood taken from sample 4461

description: whole blood taken from sample 4461


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description: whole blood taken from sample 4282


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description: whole blood taken from sample 4451


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description: whole blood taken from sample 4442


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description: whole blood taken from sample 4501


title: whole blood taken from sample 4471

description: whole blood taken from sample 4471


title: whole blood taken from sample 4252

description: whole blood taken from sample 4252


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description: whole blood taken from sample 4272


title: whole blood taken from sample 4232

description: whole blood taken from sample 4232


title: whole blood taken from sample 4271

description: whole blood taken from sample 4271


title: whole blood taken from sample 4231

description: whole blood taken from sample 4231


title: whole blood taken from sample 4472

description: whole blood taken from sample 4472


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description: whole blood taken from sample 4212


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description: whole blood taken from sample 4211


title: whole blood taken from sample 4402

description: whole blood taken from sample 4402


title: whole blood taken from sample 4452

description: whole blood taken from sample 4452


title: whole blood taken from sample 4191

description: whole blood taken from sample 4191


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description: whole blood taken from sample 4362


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description: whole blood taken from sample 4131


title: whole blood taken from sample 4441

description: whole blood taken from sample 4441


title: whole blood taken from sample 4401

description: whole blood taken from sample 4401


title: whole blood taken from sample 4192

description: whole blood taken from sample 4192


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description: whole blood taken from sample 4381


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description: whole blood taken from sample 4071


title: whole blood taken from sample 4361

description: whole blood taken from sample 4361


title: whole blood taken from sample 4251

description: whole blood taken from sample 4251


title: whole blood taken from sample 4341

description: whole blood taken from sample 4341


title: whole blood taken from sample 4051

description: whole blood taken from sample 4051


title: whole blood taken from sample 4072

description: whole blood taken from sample 4072


title: whole blood taken from sample 4132

description: whole blood taken from sample 4132


title: whole blood taken from sample 4352

description: whole blood taken from sample 4352


title: whole blood taken from sample 4091

description: whole blood taken from sample 4091


title: whole blood taken from sample 4342

description: whole blood taken from sample 4342


title: whole blood taken from sample 4332

description: whole blood taken from sample 4332


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description: whole blood taken from sample 4331


title: whole blood taken from sample 4351

description: whole blood taken from sample 4351


title: whole blood taken from sample 4052

description: whole blood taken from sample 4052


title: whole blood taken from sample 4382

description: whole blood taken from sample 4382


title: whole blood taken from sample 4092

description: whole blood taken from sample 4092


title: whole blood taken from sample 4031

description: whole blood taken from sample 4031


title: whole blood taken from sample 4032

description: whole blood taken from sample 4032


title: whole blood taken from sample 4242

description: whole blood taken from sample 4242


title: whole blood taken from sample 4312

description: whole blood taken from sample 4312


title: whole blood taken from sample 4012

description: whole blood taken from sample 4012


title: whole blood taken from sample 3992

description: whole blood taken from sample 3992


title: whole blood taken from sample 3991

description: whole blood taken from sample 3991


title: whole blood taken from sample 4261

description: whole blood taken from sample 4261


title: whole blood taken from sample 3971

description: whole blood taken from sample 3971


title: whole blood taken from sample 4182

description: whole blood taken from sample 4182


title: whole blood taken from sample 4311

description: whole blood taken from sample 4311


title: whole blood taken from sample 4181

description: whole blood taken from sample 4181


title: whole blood taken from sample 4172

description: whole blood taken from sample 4172


title: whole blood taken from sample 3961

description: whole blood taken from sample 3961


title: whole blood taken from sample 4011

description: whole blood taken from sample 4011


title: whole blood taken from sample 4262

description: whole blood taken from sample 4262


title: whole blood taken from sample 3972

description: whole blood taken from sample 3972


title: whole blood taken from sample 4201

description: whole blood taken from sample 4201


title: whole blood taken from sample 3952

description: whole blood taken from sample 3952


title: whole blood taken from sample 4171

description: whole blood taken from sample 4171


title: whole blood taken from sample 4241

description: whole blood taken from sample 4241


title: whole blood taken from sample 3962

description: whole blood taken from sample 3962


title: whole blood taken from sample 3912

description: whole blood taken from sample 3912


title: whole blood taken from sample 4142

description: whole blood taken from sample 4142


title: whole blood taken from sample 3911

description: whole blood taken from sample 3911


title: whole blood taken from sample 4151

description: whole blood taken from sample 4151


title: whole blood taken from sample 4161

description: whole blood taken from sample 4161


title: whole blood taken from sample 3871

description: whole blood taken from sample 3871


title: whole blood taken from sample 4162

description: whole blood taken from sample 4162


title: whole blood taken from sample 3922

description: whole blood taken from sample 3922


title: whole blood taken from sample 4152

description: whole blood taken from sample 4152


title: whole blood taken from sample 3872

description: whole blood taken from sample 3872


title: whole blood taken from sample 3951

description: whole blood taken from sample 3951


title: whole blood taken from sample 4111

description: whole blood taken from sample 4111


title: whole blood taken from sample 3921

description: whole blood taken from sample 3921


title: whole blood taken from sample 4081

description: whole blood taken from sample 4081


title: whole blood taken from sample 4141

description: whole blood taken from sample 4141


title: whole blood taken from sample 3852

description: whole blood taken from sample 3852


title: whole blood taken from sample 3901

description: whole blood taken from sample 3901


title: whole blood taken from sample 3811

description: whole blood taken from sample 3811


title: whole blood taken from sample 4202

description: whole blood taken from sample 4202


title: whole blood taken from sample 4022

description: whole blood taken from sample 4022


title: whole blood taken from sample 4021

description: whole blood taken from sample 4021


title: whole blood taken from sample 3902

description: whole blood taken from sample 3902


title: whole blood taken from sample 3882

description: whole blood taken from sample 3882


title: whole blood taken from sample 3781

description: whole blood taken from sample 3781


title: whole blood taken from sample 3881

description: whole blood taken from sample 3881


title: whole blood taken from sample 3771

description: whole blood taken from sample 3771


title: whole blood taken from sample 3772

description: whole blood taken from sample 3772


title: whole blood taken from sample 3752

description: whole blood taken from sample 3752


title: whole blood taken from sample 3841

description: whole blood taken from sample 3841


title: whole blood taken from sample 3822

description: whole blood taken from sample 3822


title: whole blood taken from sample 3932

description: whole blood taken from sample 3932


title: whole blood taken from sample 3802

description: whole blood taken from sample 3802


title: whole blood taken from sample 4112

description: whole blood taken from sample 4112


title: whole blood taken from sample 3651

description: whole blood taken from sample 3651


title: whole blood taken from sample 3851

description: whole blood taken from sample 3851


title: whole blood taken from sample 3721

description: whole blood taken from sample 3721


title: whole blood taken from sample 4082

description: whole blood taken from sample 4082


title: whole blood taken from sample 3862

description: whole blood taken from sample 3862


title: whole blood taken from sample 3632

description: whole blood taken from sample 3632


title: whole blood taken from sample 3631

description: whole blood taken from sample 3631


title: whole blood taken from sample 3762

description: whole blood taken from sample 3762


title: whole blood taken from sample 3782

description: whole blood taken from sample 3782


title: whole blood taken from sample 3821

description: whole blood taken from sample 3821


title: whole blood taken from sample 3612

description: whole blood taken from sample 3612


title: whole blood taken from sample 3842

description: whole blood taken from sample 3842


title: whole blood taken from sample 3861

description: whole blood taken from sample 3861


title: whole blood taken from sample 3792

description: whole blood taken from sample 3792


title: whole blood taken from sample 3791

description: whole blood taken from sample 3791


title: whole blood taken from sample 3551

description: whole blood taken from sample 3551


title: whole blood taken from sample 3552

description: whole blood taken from sample 3552


title: whole blood taken from sample 3931

description: whole blood taken from sample 3931


title: whole blood taken from sample 3692

description: whole blood taken from sample 3692


title: whole blood taken from sample 3812

description: whole blood taken from sample 3812


title: whole blood taken from sample 3652

description: whole blood taken from sample 3652


title: whole blood taken from sample 3722

description: whole blood taken from sample 3722


title: whole blood taken from sample 3761

description: whole blood taken from sample 3761


title: whole blood taken from sample 3702

description: whole blood taken from sample 3702


title: whole blood taken from sample 3641

description: whole blood taken from sample 3641


title: whole blood taken from sample 3661

description: whole blood taken from sample 3661


title: whole blood taken from sample 3662

description: whole blood taken from sample 3662


title: whole blood taken from sample 3542

description: whole blood taken from sample 3542


title: whole blood taken from sample 3531

description: whole blood taken from sample 3531


title: whole blood taken from sample 3751

description: whole blood taken from sample 3751


title: whole blood taken from sample 3611

description: whole blood taken from sample 3611


title: whole blood taken from sample 3522

description: whole blood taken from sample 3522


title: whole blood taken from sample 3701

description: whole blood taken from sample 3701


title: whole blood taken from sample 3591

description: whole blood taken from sample 3591


title: whole blood taken from sample 3521

description: whole blood taken from sample 3521


title: whole blood taken from sample 3622

description: whole blood taken from sample 3622


title: whole blood taken from sample 3602

description: whole blood taken from sample 3602


title: whole blood taken from sample 3801

description: whole blood taken from sample 3801


title: whole blood taken from sample 3691

description: whole blood taken from sample 3691


title: whole blood taken from sample 3592

description: whole blood taken from sample 3592


title: whole blood taken from sample 3501

description: whole blood taken from sample 3501


title: whole blood taken from sample 3472

description: whole blood taken from sample 3472


title: whole blood taken from sample 3541

description: whole blood taken from sample 3541


title: whole blood taken from sample 3462

description: whole blood taken from sample 3462


title: whole blood taken from sample 3621

description: whole blood taken from sample 3621


title: whole blood taken from sample 3532

description: whole blood taken from sample 3532


title: whole blood taken from sample 3642

description: whole blood taken from sample 3642


title: whole blood taken from sample 3461

description: whole blood taken from sample 3461


title: whole blood taken from sample 3601

description: whole blood taken from sample 3601


title: whole blood taken from sample 3411

description: whole blood taken from sample 3411


title: whole blood taken from sample 3341

description: whole blood taken from sample 3341


title: whole blood taken from sample 3502

description: whole blood taken from sample 3502


title: whole blood taken from sample 3451

description: whole blood taken from sample 3451


title: whole blood taken from sample 3471

description: whole blood taken from sample 3471


title: whole blood taken from sample 3342

description: whole blood taken from sample 3342


title: whole blood taken from sample 3311

description: whole blood taken from sample 3311


title: whole blood taken from sample 3442

description: whole blood taken from sample 3442


title: whole blood taken from sample 3441

description: whole blood taken from sample 3441


title: whole blood taken from sample 3412

description: whole blood taken from sample 3412


title: whole blood taken from sample 3452

description: whole blood taken from sample 3452


title: whole blood taken from sample 3312

description: whole blood taken from sample 3312


title: Hopx_CR_2

type: SRA

city: Phiadelphia

first: Corbett

middle: T

last: Berry

address: 3800 Spruce St

country: USA

institute: University of Pennsylvania

library_source: transcriptomic

data_processing:
fastq files were aligned to Release 71 of Mouse reference All cDNA GRCh38 using Kallisto.
Transcript-level count data were imported into R using the Tximport package
RUVseq (Risso et al., 2014) and edgeR (Robinson et al., 2010, McCarthy et al., 2012) bioconductor R packages were used for differential gene expression analysis. Differentially expressed genes were defined by Log2FC >0.59 and false discovery rate < 0.05.
The effect of calorie restriction was estimated using a blocking analysis (ad libitum-calorie restriction) in order to account for isolation, time, and litter dependent differences.
Supplementary_files_format_and_content: tab delimited text with estimated counts and transcripts per million (TPM)

molecule: total RNA

organism: Mus musculus

source_name: Intestinal stem cells

extract_protocol:
After phase separation using the standard TRIzol LS protocol, the aqueous phase containing RNA was mixed with 70% ethanol and transferred to RNeasy MinElute spin columns (QIAGEN). The cleanup and further concentration of the RNA was done using the standard procedure of RNeasy MinElute Cleanup Kit.
The cDNA synthesis was done using SMART-Seq v4 Ultra Low Input RNA Kit for Sequencing (Clontech) and the library was prepared using Nextera XT DNA Library Prep kit (Illumina) and sequenced using Illumina NextSeq 500

tag: cell marker

tag: feeding schedule

value: Calorie Restricted

tag: strain

tag: batch/isolation number


title: whole blood taken from sample 3212

description: whole blood taken from sample 3212


title: Hopx_CR_1


title: Hopx_AL_1

value: ad libitum


title: whole blood taken from sample 3432

description: whole blood taken from sample 3432


title: whole blood taken from sample 3431

description: whole blood taken from sample 3431


title: Hopx_AL_2


title: Lgr5_AL_3


title: Female Replicate 2

type: RNA

city: Sophia Antipolis cedex

first: frederique

last: hilliou

address: 400 route des chappes, BP167

department: SPE

country: France

institute: INRA

description: Biological replicate 2 of 2.  Drosophila Female

hyb_protocol: Oligoarray control targets and hybridization buffer (Agilent In Situ Hybridization Kit Plus) were added, and samples were applied to microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed sequential

scan_protocol: Scanned on an Agilent G2565AA scanner. Images were quantified using Agilent Feature Extraction Software (v10.2).

data_processing: Agilent Feature Extraction Software (v 10.2) was used for background subtraction and LOWESS normalization.

organism: Drosophila sechellia

source_name: FDS

label_protocol: 500ng of total RNA was  converted in cRNA with nucleotides coupled to a fluorescent dye (etihr Cy3 or Cy5) using the put Quick Amp kit (Agilent technologies, Palo Alto, CA) following manufacturers' protocol. Equal amount of Cy3 and Cy5-labelled cRNA (825ng) for two different samples were hybridized

growth_protocol: standard corn medium for drosophila, 12:12h dark/light period

extract_protocol: Total RNA extracted using Trizol following manufacturer's instructions

tag: Sex

value: virgin female

tag: age

value: day 3

tag: tissue

value: pooled adult whole body

value: Canton-S

organism: Drosophila melanogaster

source_name: FDM


title: whole blood taken from sample 3211

description: whole blood taken from sample 3211


title: whole blood taken from sample 3162

description: whole blood taken from sample 3162


title: Male Replicate 1 dye swap

description: Dye swap of Biological replicate 1 of 2. Drosophila Male

source_name: MDS

value: virgin male

source_name: MDM


title: whole blood taken from sample 2791

description: whole blood taken from sample 2791


title: whole blood taken from sample 3161

description: whole blood taken from sample 3161


title: Male Replicate 2

description: Biological replicate 2 of 2.  Drosophila Male


title: Female Replicate 1 dye swap

description: Dye swap of Biological replicate 1 of 2. Drosophila Female


title: Lgr5_CR_3


title: NU-DHL-1

city: Aalborg

first: Julie

middle: Støve

last: Bødker

address: Sdr. Skovvej 15

department: Department of Heamatology

country: Denmark

institute: Aalborg University Hospital

description:
DLBCL_DoxSensitive_NU-DHL-1_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines

hyb_protocol: Flashtag HSR Kit from Genisphere

scan_protocol: Gene Chips were scanned using the Affymetrix GeneChip scanner 3000 7G

data_processing: Data were analyzed using Partek Genomics Suite version 6.6. The .CEL files were pre-processed using the Robust Multichip Average procedure (RMA) and scan date was set as a random effect.

label: Biotin

source_name: malignant human B-cell cell line

label_protocol: Flashtag HSR Kit from Genisphere

growth_protocol: Cell lines were cultured under standard conditions at 37°C , 95% humidity, and 5% CO2

extract_protocol: Total RNA was extracted using the Invitrogen TRIzol Reagent combined with the mirVana miRNA Isolation kit. RNA quality was checked using an Agilent 2100 Bioanalyzer (Agilent Technologies, CA, USA) and the concentration measured with Nanodrop ND-1000 spectrophotometer.

treatment_protocol: 5*10^6 cells in the exponential phase were harvested for total RNA isolation

tag: cell line

tag: cell type

value: malignant human B-cell cell line

tag: disease

value: Diffuse large B-cell lymphoma

tag: response to doxorubicin

value: Sensitive

tag: growth medium


title: Female Replicate 2 dye swap

description: Dye swap of Biological replicate 2 of 2. Drosophila Female


title: OCI-Ly19

description:
DLBCL_DoxSensitive_OCI-Ly19_M_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines


title: whole blood taken from sample 2792

description: whole blood taken from sample 2792


title: Lgr5_AL_2


title: whole blood taken from sample 3392

description: whole blood taken from sample 3392


title: Lgr5_CR_2


title: Male Replicate 2 dye swap

description: Dye swap of Biological replicate 2 of 2. Drosophila Male


title: SU-DHL-5

description:
DLBCL_DoxSensitive_SU-DHL-5_(miRNA-1_0_2Xgain)2.CEL
Baseline microRNA expression data from cell lines

hyb_protocol: FlashTag Biotin HSR RNA Labeling Kit from Affymetrix (P/N 703095 Rev.1)


title: FARAGE

description:
DLBCL_DoxSensitive_FARAGE_M_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines

value: FARAGE


title: SU-DHL-8

description:
DLBCL_DoxSensitive_SU-DHL-8_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines

label_protocol: FlashTag Biotin HSR RNA Labeling Kit from Affymetrix (P/N 703095 Rev.1)


title: OCI-Ly7

description:
DLBCL_DoxResistant_OCI-Ly7_M_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines

value: Resistant


title: RIVA

description:
DLBCL_DoxResistant_RIVA_M_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines

value: RIVA


title: whole blood taken from sample 3391

description: whole blood taken from sample 3391


title: OCI-Ly3

description:
DLBCL_DoxIntermediate_OCI-Ly3_M_(miRNA-1_0_2Xgain)2.CEL
Baseline microRNA expression data from cell lines

value: Intermediate

value: RPMI1640, 10% FBS, L-glutamine


title: Male Replicate 1

description: Biological replicate 1 of 2.  Drosophila Male


title: U2932

description:
DLBCL_DoxResistant_U2932_M_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines


title: SU-DHL-4

description:
DLBCL_DoxIntermediate_SU-DHL-4_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines


title: DB

description:
DLBCL_DoxResistant_DB_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines

value: DB


title: Female Replicate 1

description: Biological replicate 1 of 2.  Drosophila Female


title: OCI-Ly8

description:
DLBCL_DoxResistant_OCI-Ly8_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines


title: MC-116

description:
DLBCL_DoxIntermediate_MC-116_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines


title: whole blood taken from sample 2692

description: whole blood taken from sample 2692

value: F

value: MZ


title: whole blood taken from sample 2622

description: whole blood taken from sample 2622

value: M


title: Lgr5_AL_1

value: ad libitum


title: whole blood taken from sample 2691

description: whole blood taken from sample 2691


title: whole blood taken from sample 2621

description: whole blood taken from sample 2621


title: Lgr5_CR_1

value: Calorie Restricted


title: NU-DUL-1

description:
DLBCL_DoxIntermediate_NU-DUL-1_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines


title: HBL-1

description:
DLBCL_DoxIntermediate_HBL-1_M_(miRNA-1_0_2Xgain).CEL
Baseline microRNA expression data from cell lines


title: Macrophages_T6877002_rep3

city: Amsterdam

first: Perry

middle: D

last: Moerland

address: Meibergdreef 9

department: Epidemiology and Data Science

country: Netherlands

institute: Amsterdam UMC

hyb_protocol: Obtained biotinylated cRNA samples were hybridized onto the Illumina MouseWG-6 v2 arrays using the standard Illumina hybridization protocol

scan_protocol: The samples were scanned using the Illumina iScan array scanner

data_processing: Data were retrieved using Illumina’s Genomestudio v. 2011.1 software. Analyses were carried out with Bioconductor packages in the statistical software package R (version 3.1.3). Normexp-by-control background correction, quantile normalization, and log2 transformation (Shi et al, NAR, 2010) were performed on the Illumina sample and control probe profiles using the limma package (version 3.22.7), function neqc.

label: biotin

label_protocol: The Illumina TotalPrep-96 RNA Amplification Kit was used to generate biotin labeled (biotin-16-UTP) amplified cRNA

growth_protocol: Bone marrow (BM) cells were isolated from C57Bl/6 mice and cultured in RPMI supplemented with 15% L929-conditioned medium to generate BM-derived macrophages (BMDM)

extract_protocol: RNA was isolated using the Aurum total RNA isolation kit (BioRad) and samples were sent to ServiceXS (Leiden, The Netherlands) for further microarray processing. To assess the quality of the samples, the concentration of the RNA was determined using the Nanodrop ND1000 spectrophotometer. The Agilent Bioanalyzer was used to analyze the quality and integrity of the RNA samples.

treatment_protocol: BMDMs of C57Bl/6 mice were pre-incubated with vehicle or compound (TRAF-STOP 6877002 or TRAF-STOP 6860766) for 1 hour and subsequently activated by the agonistic CD40 antibody FGK45 (25 ug/ml, Bioceros BV) for 8 hours.

value: bone-marrow-derived macrophages

tag: treatment

tag: stimulus

value: CD40 antibody FGK45

tag: slide

tag: position

value: C


title: Macrophages_T6877002_rep2


title: Macrophages_T6860766_rep1

value: B


title: Macrophages_T6860766_rep3


title: Macrophages_CTRL_rep3

source_name: Macrophages,CTRL

value: CTRL

value: D


title: Wild type, biological replicate 1

city: Houston

first: Kadir

middle: Caner

last: Akdemir

state: TX

address: 1515 Holcombe Blvd

institute: MD Anderson Cancer Center

description: Gene expression data from ovarian cancer cell line

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.

data_processing: Robust multi-array average (RMA) method was used with default options (with background correction, quantile normalization, and log transformation) to normalize raw data from batches using R/Bioconductor‘s affy package (12925520). For genes, which have represented by multiple probes on the array, maximum expression value was retained for further analyses. A gene is called as differentially expressed if FDR corrected p-value is less than 0.05, which is calculated with empirical Bayes method by eBayes function in Bioconductor’s limma package

source_name: OVCAR5 Wild type, biological replicate 1

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: Cells were grown in RPMI 1640 media with 10% FBS in humidified incubator at 37C and 5% CO2

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Cells were infected with Lentiviral vector expressing shRNA for 8 hrs and then selected with puromycin treatment for 2 days at 2ug/ml

value: Ovarian cancer cell

value: Passage P17


title: Macrophages_CTRL_rep2

value: A


title: Macrophages_T6877002_rep1


title: Macrophages_T6860766_rep2


title: Wild type, biological replicate 3

source_name: OVCAR5 Wild type, biological replicate 3


title: Macrophages_CTRL_rep1


title: PKCI sh3, biological rep3

description: Gene expression data from ovarian cancer cell line with PKCI knockdown

source_name: OVCAR5 PKCI sh3, biological rep3


title: PKCI sh2, biological rep2

source_name: OVCAR5 PKCI sh2, biological rep2


title: Wild type, biological replicate 2

source_name: OVCAR5 Wild type, biological replicate 2


title: PKCI sh2, biological rep3

source_name: OVCAR5 PKCI sh2, biological rep3


title: MSC Adipocyte D7 Replicate 1

city: Riyadh

first: Nehad

middle: M

last: Alajez

address: 1st floor College of Medicne

department: Anatomy

country: Saudi Arabia

institute: King Saud University College of Medicine

description: Gene expression in MSC Adipocyte D7 Rep1

hyb_protocol: 1.65 ug of Cy3-labelled cRNA was fragmented at 60°C for 30 minutes in a reaction volume of 55 ul following the manufacturer’s instructions. On completion of the fragmentation reaction, 55 ul of 2× Hi-RPM Hybridization Buffer (Agilent) was added to the fragmentation mixture and hybridized to Agilent Whole Human Genome GE 4x44K v2 Microarray chip for 17 hours at 65 °C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent), then dried immediately.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505C) using one color scan setting for 8x60k array slides

data_processing: The scanned images were analyzed with Feature Extraction Software 11.0 (Agilent) using default parameters. Data were analyzed using Agilent GeneSpring X software with percentile shift normalization. Data were filtered based on the flag. Only probes "detected" in 3 out of 6 samples were used for further analysis.

source_name: MSC Adipocyte D7 Rep1

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 100 ng RNA using the Low Input Quick Amp Labeling Kit, one-color (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN, Valencia, CA).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-2000 Spectrophotometer.

growth_protocol: hMSC-TERT were grown in DMEM 4.5g/l glucose supplemented with 10% fetal bovine serum, 1% NEAA, 1% L-glutamine, 100 mg/l penicillin, and 100 mg/l streptomycin

extract_protocol: Total RNA were isolated from control and treated cells using Total RNA Purification Kit (Norgen-Biotek Corp., Canada) according to the manufacturer’s instructions. The concentrations of total RNA were measured using NanoDrop 2000 (Thermo-Scientific).

treatment_protocol: hMSC-TERT cells were differentiatied into adipocytes for 7 days using adipogenic induction media composed of DMEM, 10% fetal bovine serum (FBS), 10% horse serum (Gibco, USA), 100 µM dexamethasone (Sigma, UK), 1 µM Rosiglitazone (BRL) (Novo Nordisk Bagsvaerd, Denmark), 3 µg/ml insulin (Sigma, UK), 450 µM isobutylmethylxanthine (IBMX).

value: derived from bone marrow mesenchymal stem cells

value: adipocyte derived from stem cells


title: MSC Control Replicate 2

description: Gene expression in control MSCs replica 2

source_name: MSC Control Rep2

value: bone marrow mesenchymal stem cells


title: PKCI sh2, biological rep1

source_name: OVCAR5 PKCI sh2, biological rep1


title: YAP sh1, biological rep2

description: Gene expression data from ovarian cancer cell line with YAP1 knockdown

source_name: OVCAR5 YAP sh1, biological rep2


title: PKCI sh3, biological rep2

source_name: OVCAR5 PKCI sh3, biological rep2


title: MSC Adipocyte D7 Replicate 3

description: Gene expression in MSC Adipocyte D7 Rep3

source_name: MSC Adipocyte D7 Rep3


title: MSC Adipocyte D7 Replicate 2

description: Gene expression in MSC Adipocyte D7 Rep2

source_name: MSC Adipocyte D7 Rep2


title: YAP sh1, biological rep3

source_name: OVCAR5 YAP sh1, biological rep3


title: MSC Control Replicate 3

description: Gene expression in control MSCs replica 3

source_name: MSC Control Rep3

value: stem cells


title: MSC Control Replicate 1

description: Gene expression in control MSCs replica 1

source_name: MSC Control Rep1


title: YAP sh2, biological rep3

source_name: OVCAR5 YAP sh2, biological rep3


title: PKCI sh3, biological rep1

source_name: OVCAR5 PKCI sh3, biological rep1


title: JG_18

city: Baltimore

first: Jeffrey

middle: G.

last: Gardner

state: MD

address: 1000 Hilltop Circle

department: Department of Biological Sciences

institute: University of Maryland - Baltimore County

data_processing:
The raw sequence data generated was converted into FASTQ files using Illumina CASSAVA 182, which were then imported into CLC Genomics Workbench 751 Low quality base pairs were trimmed from the ends and the sequence reads were mapped to the C japonicus reference genome with RPKM values calculated for genes Log2 transformation and quantile normalization was performed for the RPKM values and a Student’s T-test conducted to compare gene expression between various groups of samples Additional analysis and visualization of the data was performed using ArrayStar
Genome_build: GCA_0000192251
Supplementary_files_format_and_content: Tab-delimited text files includes comparative analysis for glucose vs xylan (exponential) samples, and RPKM means

organism: Cellvibrio japonicus

growth_protocol: MOPS defined medium

extract_protocol:
Standard extraction protocols
Sstandard Illumina protocols

treatment_protocol: 95%EtOH:5%Phenol to stop cellular metabolism

tag: genotype/variation

value: WT

tag: carbon source

value: xylan

tag: growth phase

value: stationary phase


title: JG_16


title: JG_17


title: JG_15

value: exponential phase


title: YAP sh2, biological rep2

source_name: OVCAR5 YAP sh2, biological rep2


title: Basal cell carcinoma cell line PDKC1 10h

city: Sendai

first: yuriko

last: saiki

state: Miyagi

address: 2-1 Seiryo-machi, Aoba-ku

department: Molecular Pathology

country: Japan

institute: Tohoku University School of Medicine

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45℃ on GeneChip Mouse Genome Array 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the GeneChip Scanner 3000 7G.

data_processing: The data were analyzed with Dchip 2006.

source_name: Mouse BCC cell line treated with cyclopamine for 10 hours

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2ug total RNA (Expression Analysis Technical Manual, Rev3, Affymetrix).

growth_protocol: Cells were seeded in ６-well plates in conditioned medium.

extract_protocol: The extraction of total RNA was performed using Rneasy Micro Kit(Qiagen) according to the manufacturer's instructions.

treatment_protocol: Cells were treated with or without cyclopamine, rinsed with PBS, and lysed on ice in Buffer RLT(Qiagen).


title: ANA PA, sample 2800 [reference set]

status: Public on Jan 14 2018

city: Heidelberg

first: Martin

last: Sill

address: Im Neuenheimer Feld 280

department: Division of Pediatric Neurooncology

country: Germany

institute: DKFZ

description: Methylation data from brain tumor sample.

hyb_protocol: Illumina protocol.

scan_protocol: Illumina iScan System according to the manufacturer's protocol

data_processing:
Bioconductor (Version 3.3) package minifi (Version 1.18) using function 'preprocessIllumina'
Average beta

label: biotin/DNP

source_name: brain tumor

label_protocol: Illumina protocol.

extract_protocol: Illumina protocol.

treatment_protocol: Extraction of high molecular weight DNA from frozen tumor samples was carried out by use of a salting-out method or by ultracentrifugation over cesium chloride.

tag: methylation class

value: ANA PA

tag: material

value: FFPE


title: ANA PA, sample 2799 [reference set]


title: A IDH, HG, sample 2795 [reference set]

value: A IDH, HG

value: Frozen


title: ENB, A, sample 2793 [reference set]

value: ENB, A


title: YAP sh2, biological rep1

source_name: OVCAR5 YAP sh2, biological rep1


title: ENB, A, sample 2794 [reference set]


title: ENB, A, sample 2791 [reference set]


title: Basal cell carcinoma cell line PDKC1 6h

source_name: Mouse BCC cell line treated with cyclopamine for 6 hours


title: Basal cell carcinoma cell line PDKC1 0h

source_name: Mouse BCC cell line control


title: ENB, A, sample 2789 [reference set]


title: ANA PA, sample 2798 [reference set]


title: hiPSC-RPE 3 (Control 3) NAM

city: Rensselaer

first: Thomas

last: Kiehl

state: NY

address: 1 Discovery Drive

institute: Neural Stem Cell Institute

description: Gene expression data from hiPSC-RPE sample Control 3 treated with Nicotinamide.

hyb_protocol: 3.75µg of biotin labeled cDNA was hybridized to Human Gene 2.0 ST arrays for 17 hours at 45˚C and 60rpm in the GeneChip Hybridization oven 640 (Affymetrix) followed by washing and staining in the GeneChip Fluidics Station 450 (Affymetrix).

scan_protocol: Arrays were scanned with the GeneChip scanner 3000 7G plus (Affymetrix).

data_processing: Gene expression data were analyzed using the Microarray expression console and Transcriptome analysis consoles 2.0 (Affymetrix).

source_name: hiPSC-RPE 3 treated with Nicotinamide for 3 weeks

label_protocol: 100ng of total RNA was converted to biotin labeled cDNA using GeneChip WT Plus kit (Affymetrix).

growth_protocol: hiPSC derived RPE lines were cultured in NAM-containing RPE culture medium.

extract_protocol: To extract RNA, hiPSC-RPE cells were scraped from the culture wells and collected in RNA protect. Total RNA was purified using the RNeasy plus micro kit (Qiagen) according to manufacturer's instructions.

treatment_protocol: Upon formation of monolayers of RPE, for assesing the effect of NAM by microarray, hiPSC derived RPE were treated with NAM or vehicle (cell culture grade water) for 3 weeks and then collected in RNA protect (Qiagen).

tag: source

value: hiPSC derived retinal pigment epithelium (RPE)

value: Nicotinamide 10mM

tag: hipsc-rpe sample code

value: Control 3

tag: disease status

value: Control


title: hiPSC-RPE 2 (AMD 4) NAM

description: Gene expression data from hiPSC-RPE sample AMD 4 treated with Nicotinamide.

source_name: hiPSC-RPE 2 treated with Nicotinamide for 3 weeks

value: AMD 4

value: Age related macular degeneration (AMD)


title: Basal cell carcinoma-1

source_name: Basal cell carcinoma

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA (Expression Analysis Technical Manual, Rev3, Affymetrix).

extract_protocol: The extraction of total RNA was performed using Rneasy Micro Kit according to the manufacturer's instructions.

tag: tissue

value: Basal cell carcinoma tumor


title: Normal epidermis-2

source_name: Epidermis (P0)

value: normal epidermis


title: hiPSC-RPE 3 (Control 3) vehicle

description: Gene expression data from hiPSC-RPE sample Control 3 treated with vehicle.

source_name: hiPSC-RPE 3 treated with vehicle for 3 weeks

value: Vehicle


title: Basal cell carcinoma-2


title: Normal epidermis-1


title: CONTR, WM, sample 2782 [reference set]

value: CONTR, WM


title: MELAN, sample 2776 [reference set]

value: MELAN


title: JG_14

value: WT

value: xylan

value: exponential phase


title: JG_13


title: hiPSC-RPE 2 (AMD 4) vehicle

description: Gene expression data from hiPSC-RPE sample AMD 4 treated with vehicle.

source_name: hiPSC-RPE 2 treated with vehicle for 3 weeks


title: IHG, sample 2774 [reference set]

value: IHG


title: LGG, DIG/DIA, sample 2775 [reference set]

value: LGG, DIG/DIA

value: Frozen


title: ANA PA, sample 2801 [reference set]

value: ANA PA

value: FFPE


title: PIN T,  PB A, sample 2797 [reference set]

value: PIN T,  PB A


title: PITAD, TSH, sample 2769 [reference set]

value: PITAD, TSH


title: PITAD, TSH, sample 2770 [reference set]


title: PITAD, TSH, sample 2768 [reference set]


title: LGG, DIG/DIA, sample 2796 [reference set]


title: ENB, A, sample 2792 [reference set]

value: ENB, A


title: ENB, A, sample 2790 [reference set]


title: YAP sh1, biological rep1

source_name: OVCAR5 YAP sh1, biological rep1

tag: cell type

value: Ovarian cancer cell

tag: cell line

tag: age

value: Passage P17


title: hiPSC-RPE 1 (AMD 1) NAM

description: Gene expression data from hiPSC-RPE sample AMD 1 treated with Nicotinamide.

source_name: hiPSC-RPE 1 treated with Nictinamide for 3 weeks

value: hiPSC derived retinal pigment epithelium (RPE)

value: Nicotinamide 10mM

value: AMD 1

value: Age related macular degeneration (AMD)


title: PITAD, TSH, sample 2761 [reference set]


title: ENB, A, sample 2788 [reference set]


title: hiPSC-RPE 1 (AMD 1) vehicle

description: Gene expression data from hiPSC-RPE sample AMD 1 treated with vehicle.

source_name: hiPSC-RPE 1 treated with vehicle for 3 weeks

value: Vehicle


title: PITAD, TSH, sample 2765 [reference set]


title: PITAD, TSH, sample 2764 [reference set]


title: PITAD, TSH, sample 2762 [reference set]


title: PIN T,  PB B, sample 2787 [reference set]

value: PIN T,  PB B


title: CHGL, sample 2759 [reference set]

value: CHGL


title: GBM, MYCN, sample 2786 [reference set]

value: GBM, MYCN


title: LGG, RGNT, sample 2781 [reference set]

value: LGG, RGNT


title: ETMR, sample 2784 [reference set]

value: ETMR


title: LIPN, sample 2785 [reference set]

value: LIPN


title: HGNET, BCOR, sample 2780 [reference set]

value: HGNET, BCOR

value: FFPE


title: CONTR, HYPTHAL, sample 2755 [reference set]

value: CONTR, HYPTHAL


title: CONTR, HYPTHAL, sample 2754 [reference set]


title: IHG, sample 2773 [reference set]

value: IHG

value: Frozen


title: CHGL, sample 2783 [reference set]


title: LGG, DIG/DIA, sample 2772 [reference set]

value: LGG, DIG/DIA


title: PITAD, TSH, sample 2767 [reference set]

value: PITAD, TSH


title: PITAD, TSH, sample 2766 [reference set]


title: CONTR, HYPTHAL, sample 2758 [reference set]


title: PITAD, TSH, sample 2763 [reference set]


title: LIPN, sample 2760 [reference set]


title: PIN T,  PB B, sample 2744 [reference set]


title: PIN T, PPT, sample 2743 [reference set]

value: PIN T, PPT


title: PIN T,  PB A, sample 2741 [reference set]

value: PIN T,  PB A


title: PIN T,  PB B, sample 2740 [reference set]


title: CONTR, HYPTHAL, sample 2756 [reference set]


title: PIN T,  PB B, sample 2738 [reference set]


title: DMG, K27, sample 2735 [reference set]

value: DMG, K27


title: CNS NB, FOXR2, sample 2734 [reference set]

value: CNS NB, FOXR2


title: PITAD, FSH LH, sample 2733 [reference set]

value: PITAD, FSH LH


title: CONTR, HYPTHAL, sample 2753 [reference set]


title: CONTR, HYPTHAL, sample 2752 [reference set]


title: PITAD, FSH LH, sample 2730 [reference set]


title: PITAD, FSH LH, sample 2731 [reference set]


title: CONTR, HYPTHAL, sample 2751 [reference set]


title: DLGNT, sample 2749 [reference set]

value: DLGNT


title: CONTR, CEBM, sample 2747 [reference set]

value: CONTR, CEBM


title: LGG, DIG/DIA, sample 2746 [reference set]


title: PITAD, FSH LH, sample 2729 [reference set]


title: PIN T,  PB B, sample 2745 [reference set]

value: PIN T,  PB B


title: PIN T,  PB B, sample 2742 [reference set]


title: PIN T,  PB B, sample 2739 [reference set]


title: CONTR, HYPTHAL, sample 2757 [reference set]


title: PIN T,  PB B, sample 2737 [reference set]


title: GBM, G34, sample 2726 [reference set]

value: GBM, G34


title: GBM, G34, sample 2725 [reference set]


title: ANA PA, sample 2720 [reference set]

value: ANA PA


title: CHGL, sample 2723 [reference set]

value: CHGL


title: LIPN, sample 2736 [reference set]

value: LIPN

value: FFPE


title: ANA PA, sample 2718 [reference set]


title: PITAD, STH DNS B, sample 2716 [reference set]

value: PITAD, STH DNS B


title: ANA PA, sample 2719 [reference set]


title: PITAD, FSH LH, sample 2732 [reference set]


title: GBM, G34, sample 2728 [reference set]


title: CONTR, HYPTHAL, sample 2750 [reference set]

value: CONTR, HYPTHAL


title: PITAD, ACTH, sample 2711 [reference set]

value: PITAD, ACTH


title: PITAD, ACTH, sample 2710 [reference set]


title: PITUI, sample 2709 [reference set]

value: PITUI


title: GBM, G34, sample 2724 [reference set]


title: GBM, G34, sample 2727 [reference set]


title: MB, G3, sample 2722 [reference set]

value: MB, G3


title: GBM, MES, sample 2705 [reference set]

value: GBM, MES


title: PITUI, sample 2721 [reference set]


title: PITUI, sample 2706 [reference set]


title: PITAD, ACTH, sample 2700 [reference set]


title: PITAD, ACTH, sample 2698 [reference set]


title: PITAD, ACTH, sample 2712 [reference set]


title: PITAD, STH DNS A, sample 2717 [reference set]

value: PITAD, STH DNS A


title: PITAD, STH DNS B, sample 2713 [reference set]


title: PITAD, STH DNS A, sample 2715 [reference set]


title: PITAD, ACTH, sample 2695 [reference set]


title: PITAD, ACTH, sample 2693 [reference set]


title: PITUI, sample 2708 [reference set]


title: PITAD, ACTH, sample 2701 [reference set]


title: PITAD, ACTH, sample 2694 [reference set]


title: GBM, RTK II, sample 2704 [reference set]

value: GBM, RTK II

value: Frozen


title: PITUI, sample 2702 [reference set]


title: PITAD, STH DNS B, sample 2714 [reference set]


title: PITUI, sample 2707 [reference set]


title: PITAD, ACTH, sample 2699 [reference set]


title: DLGNT, sample 2691 [reference set]

value: DLGNT


title: GBM, RTK II, sample 2703 [reference set]


title: PITAD, ACTH, sample 2696 [reference set]


title: LGG, DNT, sample 2687 [reference set]

value: LGG, DNT


title: GBM, MYCN, sample 2688 [reference set]

value: GBM, MYCN


title: PITAD, STH SPA, sample 2689 [reference set]

value: PITAD, STH SPA


title: PITUI, sample 2690 [reference set]


title: DLGNT, sample 2692 [reference set]


title: DLGNT, sample 2683 [reference set]


title: DLGNT, sample 2684 [reference set]


title: LGG, GG, sample 2685 [reference set]

value: LGG, GG


title: LGG, DNT, sample 2686 [reference set]


title: LGG, DNT, sample 2672 [reference set]


title: LGG, DNT, sample 2673 [reference set]


title: EFT, CIC, sample 2682 [reference set]

value: EFT, CIC


title: PITUI, sample 2671 [reference set]


title: HGNET, BCOR, sample 2680 [reference set]

value: HGNET, BCOR


title: LGG, DNT, sample 2677 [reference set]

value: FFPE


title: CNS NB, FOXR2, sample 2679 [reference set]

value: CNS NB, FOXR2


title: PITAD, ACTH, sample 2697 [reference set]


title: LGG, GG, sample 2676 [reference set]


title: CNS NB, FOXR2, sample 2668 [reference set]


title: PITUI, sample 2670 [reference set]


title: CNS NB, FOXR2, sample 2669 [reference set]


title: LGG, GG, sample 2674 [reference set]


title: LGG, MYB, sample 2675 [reference set]

value: LGG, MYB


title: ATRT, TYR, sample 2664 [reference set]

value: ATRT, TYR


title: CNS NB, FOXR2, sample 2667 [reference set]


title: ATRT, TYR, sample 2666 [reference set]


title: LGG, PA PF, sample 2660 [reference set]

value: LGG, PA PF


title: A IDH, sample 2663 [reference set]

value: A IDH


title: O IDH, sample 2659 [reference set]

value: O IDH


title: ATRT, SHH, sample 2665 [reference set]

value: ATRT, SHH


title: A IDH, HG, sample 2662 [reference set]

value: A IDH, HG


title: CHGL, sample 2657 [reference set]

value: CHGL


title: A IDH, sample 2655 [reference set]


title: A IDH, HG, sample 2654 [reference set]


title: A IDH, HG, sample 2653 [reference set]


title: A IDH, HG, sample 2652 [reference set]


title: A IDH, sample 2658 [reference set]


title: GBM, MYCN, sample 2649 [reference set]

value: Frozen


title: GBM, RTK II, sample 2643 [reference set]

value: GBM, RTK II


title: GBM, RTK I, sample 2642 [reference set]

value: GBM, RTK I


title: A IDH, HG, sample 2641 [reference set]


title: LGG, PA MID, sample 2651 [reference set]

value: LGG, PA MID


title: GBM, RTK II, sample 2647 [reference set]


title: O IDH, sample 2646 [reference set]


title: A IDH, sample 2650 [reference set]


title: PITUI, sample 2639 [reference set]

value: PITUI


title: DLGNT, sample 2645 [reference set]

value: DLGNT


title: GBM, MES, sample 2644 [reference set]

value: GBM, MES


title: A IDH, HG, sample 2661 [reference set]

value: FFPE


title: PITUI, sample 2619 [reference set]


title: A IDH, HG, sample 2618 [reference set]


title: LGG, MYB, sample 2620 [reference set]


title: GBM, RTK II, sample 2621 [reference set]


title: GBM, MES, sample 2634 [reference set]


title: GBM, RTK I, sample 2616 [reference set]


title: GBM, RTK II, sample 2617 [reference set]


title: LGG, DNT, sample 2613 [reference set]

value: LGG, DNT


title: PITUI, sample 2615 [reference set]


title: LGG, MYB, sample 2612 [reference set]

value: LGG, MYB


title: GBM, MES, sample 2611 [reference set]


title: PITUI, sample 2638 [reference set]


title: GBM, MES, sample 2622 [reference set]


title: GBM, MES, sample 2614 [reference set]


title: PITUI, sample 2640 [reference set]


title: GBM, RTK II, sample 2633 [reference set]


title: PITUI, sample 2637 [reference set]


title: CHGL, sample 2636 [reference set]


title: LGG, DNT, sample 2606 [reference set]


title: LGG, DNT, sample 2605 [reference set]


title: GBM, RTK II, sample 2609 [reference set]


title: GBM, MES, sample 2601 [reference set]


title: GBM, RTK II, sample 2607 [reference set]


title: LGG, PA PF, sample 2603 [reference set]


title: ANA PA, sample 2595 [reference set]

value: ANA PA


title: A IDH, HG, sample 2596 [reference set]


title: ANA PA, sample 2602 [reference set]


title: LGG, MYB, sample 2600 [reference set]


title: ATRT, TYR, sample 2592 [reference set]

value: ATRT, TYR


title: GBM, RTK I, sample 2588 [reference set]


title: PIN T,  PB B, sample 2608 [reference set]

value: PIN T,  PB B


title: ATRT, MYC, sample 2594 [reference set]

value: ATRT, MYC


title: GBM, RTK II, sample 2610 [reference set]


title: LGG, DNT, sample 2599 [reference set]


title: GBM, MES, sample 2583 [reference set]


title: ATRT, MYC, sample 2593 [reference set]


title: LGG, PA PF, sample 2604 [reference set]

value: LGG, PA PF


title: A IDH, HG, sample 2591 [reference set]

value: A IDH, HG


title: CHGL, sample 2584 [reference set]

value: CHGL


title: GBM, RTK II, sample 2590 [reference set]


title: CHGL, sample 2586 [reference set]


title: LGG, DNT, sample 2598 [reference set]


title: GBM, RTK II, sample 2589 [reference set]


title: GBM, RTK I, sample 2581 [reference set]


title: A IDH, HG, sample 2580 [reference set]


title: PITUI, sample 2574 [reference set]


title: ATRT, SHH, sample 2582 [reference set]

value: ATRT, SHH


title: GBM, RTK II, sample 2587 [reference set]

value: GBM, RTK II


title: IHG, sample 2579 [reference set]

value: IHG

value: Frozen


title: GBM, RTK I, sample 2577 [reference set]

value: GBM, RTK I


title: PIN T,  PB A, sample 2568 [reference set]

value: PIN T,  PB A


title: PITUI, sample 2576 [reference set]

value: PITUI


title: PITUI, sample 2575 [reference set]

value: FFPE


title: PITAD, PRL, sample 2573 [reference set]

value: PITAD, PRL


title: GBM, MID, sample 2572 [reference set]

value: GBM, MID


title: PIN T,  PB B, sample 2564 [reference set]


title: GBM, RTK II, sample 2571 [reference set]


title: CHGL, sample 2585 [reference set]


title: CNS NB, FOXR2, sample 2567 [reference set]

value: CNS NB, FOXR2


title: LGG, PA MID, sample 2570 [reference set]

value: LGG, PA MID


title: PIN T,  PB B, sample 2569 [reference set]

value: PIN T,  PB B


title: CNS NB, FOXR2, sample 2557 [reference set]


title: PIN T,  PB A, sample 2554 [reference set]


title: CONTR, PONS, sample 2549 [reference set]

value: CONTR, PONS


title: CONTR, PONS, sample 2551 [reference set]


title: CONTR, ADENOPIT, sample 2552 [reference set]

value: CONTR, ADENOPIT


title: CONTR, PONS, sample 2550 [reference set]


title: PIN T,  PB B, sample 2566 [reference set]


title: PIN T,  PB B, sample 2565 [reference set]


title: CONTR, PONS, sample 2547 [reference set]


title: LGG, RGNT, sample 2578 [reference set]

value: LGG, RGNT


title: CNS NB, FOXR2, sample 2562 [reference set]


title: CNS NB, FOXR2, sample 2553 [reference set]


title: CNS NB, FOXR2, sample 2559 [reference set]


title: PIN T,  PB B, sample 2563 [reference set]


title: CNS NB, FOXR2, sample 2560 [reference set]


title: HGNET, BCOR, sample 2558 [reference set]

value: HGNET, BCOR


title: CONTR, PINEAL, sample 2538 [reference set]

value: CONTR, PINEAL


title: CONTR, WM, sample 2537 [reference set]

value: CONTR, WM


title: PIN T,  PB B, sample 2555 [reference set]


title: CONTR, PONS, sample 2536 [reference set]


title: GBM, MES, sample 2532 [reference set]

value: GBM, MES


title: CNS NB, FOXR2, sample 2556 [reference set]


title: CONTR, PINEAL, sample 2548 [reference set]


title: CONTR, PONS, sample 2545 [reference set]


title: A IDH, sample 2530 [reference set]

value: A IDH


title: CONTR, PONS, sample 2543 [reference set]


title: CONTR, PONS, sample 2544 [reference set]


title: CONTR, PONS, sample 2541 [reference set]


title: CONTR, WM, sample 2542 [reference set]


title: CONTR, PINEAL, sample 2539 [reference set]


title: CONTR, PONS, sample 2540 [reference set]


title: CONTR, PONS, sample 2535 [reference set]


title: CONTR, ADENOPIT, sample 2534 [reference set]


title: A IDH, sample 2533 [reference set]


title: LGG, GG, sample 2531 [reference set]

value: LGG, GG


title: GBM, RTK III, sample 2524 [reference set]

value: GBM, RTK III


title: ANA PA, sample 2526 [reference set]

value: ANA PA


title: GBM, RTK II, sample 2521 [reference set]

value: GBM, RTK II

value: FFPE


title: ANA PA, sample 2523 [reference set]


title: GBM, RTK I, sample 2519 [reference set]

value: GBM, RTK I


title: MB, G4, sample 2528 [reference set]

value: MB, G4


title: GBM, RTK II, sample 2527 [reference set]


title: A IDH, HG, sample 2525 [reference set]

value: A IDH, HG


title: LGG, RGNT, sample 2513 [reference set]


title: MB, SHH INF, sample 2515 [reference set]

value: MB, SHH INF


title: GBM, RTK II, sample 2517 [reference set]


title: LGG, PA MID, sample 2522 [reference set]

value: LGG, PA MID

value: Frozen


title: MNG, sample 2507 [reference set]

value: MNG


title: GBM, RTK II, sample 2520 [reference set]


title: A IDH, sample 2529 [reference set]


title: ATRT, TYR, sample 2516 [reference set]

value: ATRT, TYR


title: EWS, sample 2514 [reference set]

value: EWS


title: MNG, sample 2502 [reference set]


title: PIN T, PPT, sample 2509 [reference set]

value: PIN T, PPT


title: LGG, RGNT, sample 2512 [reference set]

value: LGG, RGNT


title: MNG, sample 2496 [reference set]


title: MNG, sample 2498 [reference set]


title: PIN T, PPT, sample 2508 [reference set]


title: MNG, sample 2505 [reference set]


title: MNG, sample 2497 [reference set]


title: MNG, sample 2501 [reference set]


title: MNG, sample 2504 [reference set]


title: MNG, sample 2492 [reference set]


title: MNG, sample 2493 [reference set]


title: MNG, sample 2491 [reference set]


title: MNG, sample 2503 [reference set]


title: MNG, sample 2487 [reference set]


title: MNG, sample 2500 [reference set]


title: MNG, sample 2495 [reference set]


title: MNG, sample 2499 [reference set]


title: MNG, sample 2483 [reference set]


title: MNG, sample 2494 [reference set]


title: O IDH, sample 2484 [reference set]

value: O IDH


title: MNG, sample 2506 [reference set]


title: MNG, sample 2488 [reference set]


title: A IDH, HG, sample 2486 [reference set]


title: MNG, sample 2489 [reference set]


title: GBM, MID, sample 2475 [reference set]

value: GBM, MID


title: ANA PA, sample 2476 [reference set]


title: EPN, MPE, sample 2485 [reference set]

value: EPN, MPE


title: GBM, RTK II, sample 2472 [reference set]


title: GBM, MID, sample 2597 [reference set]


title: SCHW, sample 2479 [reference set]

value: SCHW


title: EWS, sample 2466 [reference set]


title: MNG, sample 2490 [reference set]


title: HGNET, BCOR, sample 2482 [reference set]

value: HGNET, BCOR


title: GBM, MID, sample 2477 [reference set]

value: FFPE


title: GBM, MES, sample 2473 [reference set]

value: GBM, MES


title: MB, G3, sample 2459 [reference set]

value: MB, G3


title: A IDH, sample 2460 [reference set]

value: A IDH


title: GBM, RTK II, sample 2457 [reference set]

value: GBM, RTK II


title: A IDH, HG, sample 2470 [reference set]

value: A IDH, HG


title: GBM, RTK II, sample 2469 [reference set]


title: O IDH, sample 2471 [reference set]


title: MB, G4, sample 2465 [reference set]

value: MB, G4


title: MB, G4, sample 2467 [reference set]


title: IHG, sample 2456 [reference set]

value: IHG


title: MB, WNT, sample 2463 [reference set]

value: MB, WNT


title: MB, SHH CHL AD, sample 2451 [reference set]

value: MB, SHH CHL AD


title: GBM, RTK II, sample 2464 [reference set]


title: GBM, MES, sample 2450 [reference set]


title: GBM, MES, sample 2461 [reference set]


title: LGG, DNT, sample 2462 [reference set]

value: LGG, DNT


title: SFT HMPC, sample 2458 [reference set]

value: SFT HMPC


title: SFT HMPC, sample 2448 [reference set]


title: ANA PA, sample 2454 [reference set]

value: ANA PA


title: PIN T,  PB B, sample 2561 [reference set]

value: PIN T,  PB B


title: MB, SHH CHL AD, sample 2447 [reference set]


title: GBM, MYCN, sample 2455 [reference set]

value: GBM, MYCN


title: A IDH, HG, sample 2449 [reference set]


title: IHG, sample 2452 [reference set]


title: LGG, PA PF, sample 2445 [reference set]

value: LGG, PA PF


title: A IDH, sample 2442 [reference set]


title: A IDH, sample 2446 [reference set]


title: GBM, RTK II, sample 2468 [reference set]


title: A IDH, HG, sample 2443 [reference set]


title: GBM, RTK II, sample 2453 [reference set]


title: GBM, RTK II, sample 2441 [reference set]


title: O IDH, sample 2444 [reference set]

value: O IDH


title: DMG, K27, sample 2439 [reference set]

value: DMG, K27

value: Frozen


title: GBM, RTK I, sample 2440 [reference set]

value: GBM, RTK I

value: FFPE


title: MB, SHH CHL AD, sample 2436 [reference set]


title: GBM, RTK II, sample 2434 [reference set]

value: GBM, RTK II


title: A IDH, sample 2431 [reference set]

value: A IDH


title: DMG, K27, sample 2438 [reference set]


title: A IDH, sample 2430 [reference set]


title: O IDH, sample 2432 [reference set]


title: LGG, DNT, sample 2429 [reference set]


title: DMG, K27, sample 2437 [reference set]


title: O IDH, sample 2426 [reference set]


title: GBM, RTK I, sample 2425 [reference set]


title: A IDH, HG, sample 2423 [reference set]

value: A IDH, HG


title: GBM, RTK II, sample 2424 [reference set]


title: EWS, sample 2422 [reference set]

value: EWS


title: MB, G4, sample 2421 [reference set]

value: MB, G4


title: ANA PA, sample 2419 [reference set]


title: GBM, RTK I, sample 2417 [reference set]


title: GBM, RTK II, sample 2416 [reference set]


title: O IDH, sample 2435 [reference set]


title: LGG, DNT, sample 2412 [reference set]


title: CN, sample 2415 [reference set]

value: CN


title: ANA PA, sample 2413 [reference set]


title: GBM, RTK II, sample 2414 [reference set]


title: ENB, B, sample 2407 [reference set]

value: ENB, B


title: MB, G4, sample 2411 [reference set]


title: CPH, PAP, sample 2410 [reference set]

value: CPH, PAP


title: ENB, A, sample 2408 [reference set]

value: ENB, A


title: ENB, B, sample 2404 [reference set]


title: GBM, RTK II, sample 2409 [reference set]


title: ENB, A, sample 2406 [reference set]


title: ENB, A, sample 2405 [reference set]


title: ENB, B, sample 2403 [reference set]


title: RETB, sample 2401 [reference set]

value: RETB


title: RETB, sample 2402 [reference set]


title: LGG, PA MID, sample 2418 [reference set]

value: LGG, PA MID


title: RETB, sample 2399 [reference set]


title: A IDH, HG, sample 2420 [reference set]


title: RETB, sample 2398 [reference set]


title: LGG, PA MID, sample 2396 [reference set]


title: ATRT, MYC, sample 2395 [reference set]

value: ATRT, MYC


title: A IDH, sample 2397 [reference set]


title: A IDH, sample 2393 [reference set]


title: GBM, RTK II, sample 2390 [reference set]


title: CPH, PAP, sample 2391 [reference set]


title: GBM, RTK I, sample 2389 [reference set]


title: ENB, B, sample 2387 [reference set]


title: ENB, A, sample 2388 [reference set]


title: ANA PA, sample 2384 [reference set]

value: ANA PA


title: ANA PA, sample 2385 [reference set]


title: ENB, A, sample 2386 [reference set]


title: RETB, sample 2383 [reference set]


title: RETB, sample 2378 [reference set]


title: RETB, sample 2400 [reference set]


title: RETB, sample 2379 [reference set]


title: RETB, sample 2382 [reference set]


title: RETB, sample 2374 [reference set]


title: RETB, sample 2380 [reference set]


title: RETB, sample 2373 [reference set]


title: RETB, sample 2377 [reference set]


title: RETB, sample 2376 [reference set]


title: RETB, sample 2375 [reference set]


title: RETB, sample 2381 [reference set]


title: O IDH, sample 2392 [reference set]

value: O IDH


title: RETB, sample 2370 [reference set]

value: Frozen


title: LGG, DNT, sample 2372 [reference set]

value: LGG, DNT


title: GBM, MES, sample 2371 [reference set]

value: GBM, MES

value: FFPE


title: CONTR, INFLAM, sample 2367 [reference set]

value: CONTR, INFLAM


title: RETB, sample 2369 [reference set]


title: SFT HMPC, sample 2362 [reference set]

value: SFT HMPC


title: GBM, RTK II, sample 2366 [reference set]

value: GBM, RTK II


title: GBM, RTK III, sample 2357 [reference set]

value: GBM, RTK III


title: MB, G4, sample 2353 [reference set]

value: MB, G4


title: A IDH, sample 2363 [reference set]

value: A IDH


title: O IDH, sample 2349 [reference set]


title: GBM, MES, sample 2356 [reference set]


title: RETB, sample 2368 [reference set]


title: GBM, RTK I, sample 2361 [reference set]

value: GBM, RTK I


title: ATRT, TYR, sample 2355 [reference set]

value: ATRT, TYR


title: O IDH, sample 2351 [reference set]


title: IHG, sample 2364 [reference set]

value: IHG


title: HGNET, BCOR, sample 2365 [reference set]

value: HGNET, BCOR


title: GBM, RTK II, sample 2358 [reference set]


title: HGNET, BCOR, sample 2359 [reference set]


title: PIN T,  PB A, sample 2352 [reference set]

value: PIN T,  PB A


title: LGG, PA MID, sample 2360 [reference set]

value: LGG, PA MID


title: O IDH, sample 2339 [reference set]

value: O IDH


title: DMG, K27, sample 2337 [reference set]

value: DMG, K27

value: Frozen


title: GBM, G34, sample 2338 [reference set]

value: GBM, G34


title: GBM, RTK I, sample 2344 [reference set]


title: GBM, RTK I, sample 2331 [reference set]

value: FFPE


title: CONTR, INFLAM, sample 2335 [reference set]

value: CONTR, INFLAM


title: CONTR, INFLAM, sample 2322 [reference set]


title: GBM, RTK II, sample 2332 [reference set]


title: ATRT, MYC, sample 2354 [reference set]

value: ATRT, MYC


title: CHORDM, sample 2326 [reference set]

value: CHORDM


title: GBM, RTK II, sample 2321 [reference set]

value: GBM, RTK II


title: GBM, RTK I, sample 2323 [reference set]


title: HGNET, BCOR, sample 2348 [reference set]


title: O IDH, sample 2318 [reference set]


title: A IDH, HG, sample 2343 [reference set]

value: A IDH, HG


title: O IDH, sample 2316 [reference set]


title: A IDH, sample 2341 [reference set]

value: A IDH


title: ETMR, sample 2346 [reference set]

value: ETMR


title: A IDH, sample 2314 [reference set]


title: GBM, RTK II, sample 2313 [reference set]


title: O IDH, sample 2340 [reference set]


title: CONTR, INFLAM, sample 2336 [reference set]


title: CONTR, PONS, sample 2546 [reference set]

value: CONTR, PONS


title: LGG, RGNT, sample 2330 [reference set]

value: LGG, RGNT


title: GBM, RTK I, sample 2333 [reference set]

value: GBM, RTK I


title: A IDH, sample 2342 [reference set]


title: CHORDM, sample 2327 [reference set]


title: GBM, RTK II, sample 2324 [reference set]


title: GBM, MES, sample 2334 [reference set]

value: GBM, MES


title: O IDH, sample 2317 [reference set]


title: GBM, RTK I, sample 2320 [reference set]


title: GBM, RTK I, sample 2311 [reference set]


title: GBM, RTK II, sample 2312 [reference set]


title: A IDH, sample 2315 [reference set]


title: GBM, RTK I, sample 2309 [reference set]


title: PIN T,  PB B, sample 2319 [reference set]

value: PIN T,  PB B


title: GBM, RTK II, sample 2307 [reference set]


title: LYMPHO, sample 2303 [reference set]

value: LYMPHO


title: GBM, MES, sample 2308 [reference set]


title: GBM, RTK I, sample 2310 [reference set]


title: O IDH, sample 2299 [reference set]

value: O IDH


title: GBM, RTK II, sample 2295 [reference set]


title: LGG, PA PF, sample 2298 [reference set]

value: LGG, PA PF


title: PIN T, PPT, sample 2305 [reference set]

value: PIN T, PPT


title: O IDH, sample 2304 [reference set]

value: FFPE


title: O IDH, sample 2296 [reference set]


title: GBM, RTK I, sample 2306 [reference set]

value: Frozen


title: GBM, RTK I, sample 2293 [reference set]


title: GBM, MES, sample 2301 [reference set]


title: GBM, MID, sample 2292 [reference set]

value: GBM, MID


title: A IDH, HG, sample 2291 [reference set]


title: A IDH, sample 2290 [reference set]


title: GBM, RTK I, sample 2287 [reference set]


title: GBM, RTK II, sample 2286 [reference set]


title: GBM, RTK I, sample 2294 [reference set]


title: EWS, sample 2285 [reference set]

value: EWS


title: CONTR, INFLAM, sample 2283 [reference set]

value: CONTR, INFLAM


title: GBM, MES, sample 2284 [reference set]


title: GBM, RTK II, sample 2278 [reference set]

value: GBM, RTK II


title: GBM, RTK I, sample 2279 [reference set]


title: GBM, RTK II, sample 2282 [reference set]


title: CONTR, INFLAM, sample 2281 [reference set]


title: GBM, MES, sample 2274 [reference set]


title: MB, G4, sample 2273 [reference set]

value: MB, G4


title: GBM, RTK I, sample 2276 [reference set]


title: GBM, RTK I, sample 2275 [reference set]


title: MB, G4, sample 2288 [reference set]


title: ANA PA, sample 2269 [reference set]

value: ANA PA


title: A IDH, sample 2268 [reference set]

value: A IDH


title: HMB, sample 2267 [reference set]

value: HMB


title: CHORDM, sample 2271 [reference set]

value: CHORDM


title: CHORDM, sample 2270 [reference set]


title: A IDH, sample 2264 [reference set]


title: MB, G4, sample 2262 [reference set]


title: HMB, sample 2266 [reference set]


title: GBM, RTK II, sample 2277 [reference set]


title: GBM, MES, sample 2280 [reference set]

value: GBM, MES


title: GBM, RTK I, sample 2259 [reference set]

value: GBM, RTK I


title: PIN T,  PB A, sample 2261 [reference set]

value: PIN T,  PB A


title: O IDH, sample 2260 [reference set]

value: O IDH


title: LGG, PA MID, sample 2258 [reference set]

value: LGG, PA MID


title: CHORDM, sample 2272 [reference set]


title: GBM, MID, sample 2255 [reference set]


title: EFT, CIC, sample 2250 [reference set]

value: EFT, CIC


title: LGG, PA PF, sample 2263 [reference set]

value: LGG, PA PF

value: FFPE


title: A IDH, sample 2246 [reference set]

value: Frozen


title: GBM, RTK II, sample 2254 [reference set]


title: A IDH, HG, sample 2249 [reference set]

value: A IDH, HG


title: A IDH, sample 2243 [reference set]


title: GBM, RTK II, sample 2256 [reference set]


title: A IDH, sample 2245 [reference set]


title: A IDH, sample 2242 [reference set]


title: A IDH, sample 2241 [reference set]


title: GBM, RTK II, sample 2248 [reference set]


title: LGG, RGNT, sample 2239 [reference set]

value: LGG, RGNT


title: SFT HMPC, sample 2238 [reference set]

value: SFT HMPC


title: O IDH, sample 2233 [reference set]


title: O IDH, sample 2236 [reference set]


title: O IDH, sample 2253 [reference set]


title: A IDH, sample 2235 [reference set]


title: LGG, DNT, sample 2229 [reference set]

value: LGG, DNT


title: PIN T, PPT, sample 2230 [reference set]

value: PIN T, PPT


title: GBM, RTK II, sample 2231 [reference set]

value: GBM, RTK II


title: GBM, RTK I, sample 2232 [reference set]


title: O IDH, sample 2240 [reference set]


title: MB, SHH INF, sample 2226 [reference set]

value: MB, SHH INF


title: ATRT, TYR, sample 2225 [reference set]

value: ATRT, TYR


title: A IDH, sample 2244 [reference set]

value: A IDH


title: ETMR, sample 2215 [reference set]

value: ETMR


title: HGNET, BCOR, sample 2209 [reference set]

value: HGNET, BCOR


title: GBM, MES, sample 2213 [reference set]

value: GBM, MES


title: GBM, RTK I, sample 2218 [reference set]

value: GBM, RTK I


title: HGNET, BCOR, sample 2219 [reference set]


title: LGG, DIG/DIA, sample 2208 [reference set]

value: LGG, DIG/DIA


title: A IDH, sample 2228 [reference set]


title: EFT, CIC, sample 2234 [reference set]

value: EFT, CIC


title: LGG, MYB, sample 2207 [reference set]

value: LGG, MYB

value: FFPE


title: GBM, RTK II, sample 2211 [reference set]


title: GBM, MES, sample 2204 [reference set]


title: MB, SHH INF, sample 2206 [reference set]

value: Frozen


title: A IDH, sample 2216 [reference set]


title: GBM, RTK II, sample 2203 [reference set]


title: EFT, CIC, sample 2205 [reference set]


title: GBM, MES, sample 2221 [reference set]


title: GBM, RTK II, sample 2202 [reference set]