title: Breast cancer tissue 653

description:
Breast cancer data.
B270-140903


title: Breast cancer tissue 648

status: Public on Aug 11 2017

type: RNA

city: Taipei

first: Hung-Chun

last: Cheng

state: Taiwan

address: 125 Lih-Der Road, Peitou District

department: Research

country: Taiwan

institute: Koo Foundation SYS Cancer Center

description:
Breast cancer data.
B270-140869

hyb_protocol: A cocktail was prepared by combining the specific amounts of fragmented cRNA, probe array controls, bovine serum albumin, and herring sperm DNA according to the protocol of the manufacturer. The cRNA cocktail was hybridized to oligonucleotide probes on the U133 Plus 2.0 array for 16 hours at 45˚C according to the Affymetrix protocol. Immediately following hybridization, the hybridized probe array underwent an automated washing and staining in an Affymetrix GeneChip Fluidics Station 450 using the protocol EukGE-WS2v5.

scan_protocol: U133 Plus 2.0 arrays were scanned using an Affymetrix GeneChip Scanner 3000.

data_processing: The data were analyzed with RMA using Affymetrix default analysis settings, and normalized using quantile normalization.

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: primary breast cancer tissue

label_protocol: Biotin-labeled complementary RNA (cRNA) hybridization targets were prepared from 5 ug total RNA by in vitro transcription from cDNA templates according to the Affymetrix protocol. The cRNA was purified and chemically fragmented before hybridization.

extract_protocol: Total RNA was isolated using Trizol (Invitrogen, Carlsbad, CA) and purified with the RNeasy Mini Kit (Qiagen, Valencia, CA).

tag: tissue

value: primary breast cancer

tag: gender

value: female

tag: age at diagnosis

tag: surgery

value: MRM

tag: Stage

tag: t stage

tag: n stage

tag: 18-gene score


title: Breast cancer tissue 651

description:
Breast cancer data.
B270-140893


title: Breast cancer tissue 660

description:
Breast cancer data.
B270-140961


title: Breast cancer tissue 655

description:
Breast cancer data.
B270-140923


title: Breast cancer tissue 645

description:
Breast cancer data.
B270-140852


title: Breast cancer tissue 636

description:
Breast cancer data.
B270-140776

value: BCT


title: Breast cancer tissue 644

description:
Breast cancer data.
B270-140832


title: Breast cancer tissue 646

description:
Breast cancer data.
B270-140859


title: Breast cancer tissue 639

description:
Breast cancer data.
B270-140807


title: Breast cancer tissue 647

description:
Breast cancer data.
B270-140863


title: Breast cancer tissue 643

description:
Breast cancer data.
B270-140829


title: Breast cancer tissue 641

description:
Breast cancer data.
B270-140810


title: Breast cancer tissue 637

description:
Breast cancer data.
B270-140801


title: Breast cancer tissue 638

description:
Breast cancer data.
B270-140805


title: Breast cancer tissue 642

description:
Breast cancer data.
B270-140826


title: Breast cancer tissue 635

description:
Breast cancer data.
B270-140770


title: Breast cancer tissue 631

description:
Breast cancer data.
B270-140745


title: Breast cancer tissue 630

description:
Breast cancer data.
B270-140744


title: Breast cancer tissue 632

description:
Breast cancer data.
B270-140750


title: Breast cancer tissue 633

description:
Breast cancer data.
B270-140751


title: Breast cancer tissue 634

description:
Breast cancer data.
B270-140762


title: Breast cancer tissue 629

description:
Breast cancer data.
B270-140743


title: Breast cancer tissue 640

description:
Breast cancer data.
B270-140809


title: Breast cancer tissue 627

description:
Breast cancer data.
B270-140738


title: Breast cancer tissue 619

description:
Breast cancer data.
B270-140659


title: Breast cancer tissue 617

description:
Breast cancer data.
B270-140645


title: Breast cancer tissue 620

description:
Breast cancer data.
B270-140667


title: Breast cancer tissue 624

description:
Breast cancer data.
B270-140699


title: Breast cancer tissue 616

description:
Breast cancer data.
B270-140636


title: Breast cancer tissue 621

description:
Breast cancer data.
B270-140691


title: Breast cancer tissue 628

description:
Breast cancer data.
B270-140742


title: Breast cancer tissue 622

description:
Breast cancer data.
B270-140694


title: Breast cancer tissue 623

description:
Breast cancer data.
B270-140697


title: Breast cancer tissue 626

description:
Breast cancer data.
B270-140718


title: Breast cancer tissue 614

description:
Breast cancer data.
B270-140591


title: Breast cancer tissue 610

description:
Breast cancer data.
B270-140528


title: Breast cancer tissue 609

description:
Breast cancer data.
B270-140517


title: Breast cancer tissue 615

description:
Breast cancer data.
B270-140593


title: Breast cancer tissue 618

description:
Breast cancer data.
B270-140656


title: Breast cancer tissue 611

description:
Breast cancer data.
B270-140563


title: Breast cancer tissue 613

description:
Breast cancer data.
B270-140577


title: Breast cancer tissue 607

description:
Breast cancer data.
B270-140487


title: Breast cancer tissue 608

description:
Breast cancer data.
B270-140509


title: Breast cancer tissue 625

description:
Breast cancer data.
B270-140717


title: Breast cancer tissue 612

description:
Breast cancer data.
B270-140564


title: Breast cancer tissue 606

description:
Breast cancer data.
B270-140472


title: Breast cancer tissue 604

description:
Breast cancer data.
B270-140430


title: Breast cancer tissue 603

description:
Breast cancer data.
B270-140419


title: Breast cancer tissue 605

description:
Breast cancer data.
B270-140468


title: Breast cancer tissue 600

description:
Breast cancer data.
B270-140403


title: Breast cancer tissue 602

description:
Breast cancer data.
B270-140416


title: Breast cancer tissue 599

description:
Breast cancer data.
B270-140385


title: Breast cancer tissue 596

description:
Breast cancer data.
B270-140339


title: Breast cancer tissue 601

description:
Breast cancer data.
B270-140404


title: Breast cancer tissue 587

description:
Breast cancer data.
B270-140219


title: Breast cancer tissue 590

description:
Breast cancer data.
B270-140232


title: Breast cancer tissue 598

description:
Breast cancer data.
B270-140375


title: Breast cancer tissue 595

description:
Breast cancer data.
B270-140333


title: Breast cancer tissue 591

description:
Breast cancer data.
B270-140241


title: Breast cancer tissue 580

description:
Breast cancer data.
B270-140098


title: Breast cancer tissue 585

description:
Breast cancer data.
B270-140131


title: Breast cancer tissue 597

description:
Breast cancer data.
B270-140362


title: Breast cancer tissue 588

description:
Breast cancer data.
B270-140228


title: Breast cancer tissue 592

description:
Breast cancer data.
B270-140265


title: Breast cancer tissue 578

description:
Breast cancer data.
B270-140067


title: Breast cancer tissue 586

description:
Breast cancer data.
B270-140137


title: Breast cancer tissue 581

description:
Breast cancer data.
B270-140108


title: Breast cancer tissue 582

description:
Breast cancer data.
B270-140120


title: Breast cancer tissue 589

description:
Breast cancer data.
B270-140231


title: Breast cancer tissue 593

description:
Breast cancer data.
B270-140301


title: Breast cancer tissue 594

description:
Breast cancer data.
B270-140319


title: Breast cancer tissue 579

description:
Breast cancer data.
B270-140072


title: Breast cancer tissue 583

description:
Breast cancer data.
B270-140127


title: Breast cancer tissue 575

description:
Breast cancer data.
B270-140034


title: Breast cancer tissue 584

description:
Breast cancer data.
B270-140129


title: Breast cancer tissue 576

description:
Breast cancer data.
B270-140047


title: Breast cancer tissue 577

description:
Breast cancer data.
B270-140052


title: Breast cancer tissue 571

description:
Breast cancer data.
B270-140024


title: Breast cancer tissue 574

description:
Breast cancer data.
B270-140033


title: Breast cancer tissue 564

description:
Breast cancer data.
B270-131660


title: Breast cancer tissue 568

description:
Breast cancer data.
B270-140003


title: Breast cancer tissue 573

description:
Breast cancer data.
B270-140029


title: Breast cancer tissue 572

description:
Breast cancer data.
B270-140027


title: Breast cancer tissue 570

description:
Breast cancer data.
B270-140019


title: Breast cancer tissue 569

description:
Breast cancer data.
B270-140017


title: Breast cancer tissue 567

description:
Breast cancer data.
B270-131674


title: Breast cancer tissue 565

description:
Breast cancer data.
B270-131661


title: Breast cancer tissue 562

description:
Breast cancer data.
B270-131635


title: Breast cancer tissue 566

description:
Breast cancer data.
B270-131671


title: Breast cancer tissue 559

description:
Breast cancer data.
B270-131603


title: Breast cancer tissue 552

description:
Breast cancer data.
B270-131507


title: Breast cancer tissue 563

description:
Breast cancer data.
B270-131639


title: Breast cancer tissue 556

description:
Breast cancer data.
B270-131539


title: Breast cancer tissue 558

description:
Breast cancer data.
B270-131585


title: Breast cancer tissue 555

description:
Breast cancer data.
B270-131532


title: Breast cancer tissue 560

description:
Breast cancer data.
B270-131607


title: Breast cancer tissue 557

description:
Breast cancer data.
B270-131554


title: Breast cancer tissue 550

description:
Breast cancer data.
B270-131489


title: Breast cancer tissue 547

description:
Breast cancer data.
B270-131417


title: Breast cancer tissue 554

description:
Breast cancer data.
B270-131529


title: Breast cancer tissue 561

description:
Breast cancer data.
B270-131615


title: Breast cancer tissue 548

description:
Breast cancer data.
B270-131470


title: Breast cancer tissue 549

description:
Breast cancer data.
B270-131476


title: Breast cancer tissue 553

description:
Breast cancer data.
B270-131517


title: Breast cancer tissue 551

description:
Breast cancer data.
B270-131505


title: Breast cancer tissue 545

description:
Breast cancer data.
B270-131195


title: Breast cancer tissue 544

description:
Breast cancer data.
B270-131155


title: Breast cancer tissue 546

description:
Breast cancer data.
B270-131407


title: Breast cancer tissue 542

description:
Breast cancer data.
B270-131151


title: Breast cancer tissue 536

description:
Breast cancer data.
B270-121695


title: Breast cancer tissue 534

description:
Breast cancer data.
B270-121665


title: Breast cancer tissue 538

description:
Breast cancer data.
B270-131017


title: Breast cancer tissue 540

description:
Breast cancer data.
B270-131035


title: Breast cancer tissue 524

description:
Breast cancer data.
B270-121094


title: Breast cancer tissue 521

description:
Breast cancer data.
B270-120968


title: Breast cancer tissue 529

description:
Breast cancer data.
B270-121373


title: Breast cancer tissue 528

description:
Breast cancer data.
B270-121350


title: Breast cancer tissue 526

description:
Breast cancer data.
B270-121309


title: Breast cancer tissue 541

description:
Breast cancer data.
B270-131109


title: Breast cancer tissue 522

description:
Breast cancer data.
B270-121066


title: Breast cancer tissue 537

description:
Breast cancer data.
B270-130994


title: Breast cancer tissue 530

description:
Breast cancer data.
B270-121502


title: Breast cancer tissue 539

description:
Breast cancer data.
B270-131034


title: Breast cancer tissue 525

description:
Breast cancer data.
B270-121206


title: Breast cancer tissue 523

description:
Breast cancer data.
B270-121087


title: Breast cancer tissue 519

description:
Breast cancer data.
B270-120885


title: Breast cancer tissue 535

description:
Breast cancer data.
B270-121680


title: Breast cancer tissue 517

description:
Breast cancer data.
B270-120761


title: Breast cancer tissue 520

description:
Breast cancer data.
B270-120886


title: Breast cancer tissue 518

description:
Breast cancer data.
B270-120869


title: Breast cancer tissue 533

description:
Breast cancer data.
B270-121664


title: Breast cancer tissue 531

description:
Breast cancer data.
B270-121620


title: Breast cancer tissue 543

description:
Breast cancer data.
B270-131152


title: Breast cancer tissue 532

description:
Breast cancer data.
B270-121629


title: Breast cancer tissue 516

description:
Breast cancer data.
B270-120754


title: Breast cancer tissue 515

description:
Breast cancer data.
B270-120702


title: Breast cancer tissue 513

description:
Breast cancer data.
B270-120625


title: Breast cancer tissue 527

description:
Breast cancer data.
B270-121347


title: Breast cancer tissue 510

description:
Breast cancer data.
B270-120585


title: Breast cancer tissue 509

description:
Breast cancer data.
B270-120557


title: Breast cancer tissue 501

description:
Breast cancer data.
B270-120091


title: Breast cancer tissue 514

description:
Breast cancer data.
B270-120665


title: Breast cancer tissue 500

description:
Breast cancer data.
B270-120079


title: Breast cancer tissue 512

description:
Breast cancer data.
B270-120612


title: Breast cancer tissue 505

description:
Breast cancer data.
B270-120354


title: Breast cancer tissue 508

description:
Breast cancer data.
B270-120456


title: Breast cancer tissue 503

description:
Breast cancer data.
B270-120206


title: Breast cancer tissue 498

description:
Breast cancer data.
B270-111792


title: Breast cancer tissue 507

description:
Breast cancer data.
B270-120405


title: Breast cancer tissue 504

description:
Breast cancer data.
B270-120234


title: Breast cancer tissue 497

description:
Breast cancer data.
B270-111708


title: Breast cancer tissue 499

description:
Breast cancer data.
B270-120025


title: Breast cancer tissue 502

description:
Breast cancer data.
B270-120106


title: Breast cancer tissue 489

description:
Breast cancer data.
B270-111431


title: Breast cancer tissue 506

description:
Breast cancer data.
B270-120393


title: Breast cancer tissue 490

description:
Breast cancer data.
B270-111432


title: Breast cancer tissue 494

description:
Breast cancer data.
B270-111530


title: Breast cancer tissue 491

description:
Breast cancer data.
B270-111447


title: Breast cancer tissue 485

description:
Breast cancer data.
B270-111356


title: Breast cancer tissue 496

description:
Breast cancer data.
B270-111630


title: Breast cancer tissue 487

description:
Breast cancer data.
B270-111397


title: Breast cancer tissue 511

description:
Breast cancer data.
B270-120606


title: Breast cancer tissue 492

description:
Breast cancer data.
B270-111456


title: Breast cancer tissue 495

description:
Breast cancer data.
B270-111563


title: Breast cancer tissue 486

description:
Breast cancer data.
B270-111396


title: Breast cancer tissue 482

description:
Breast cancer data.
B270-111278


title: Breast cancer tissue 493

description:
Breast cancer data.
B270-111485


title: Breast cancer tissue 483

description:
Breast cancer data.
B270-111324


title: Breast cancer tissue 478

description:
Breast cancer data.
B270-111124


title: Breast cancer tissue 480

description:
Breast cancer data.
B270-111221


title: Breast cancer tissue 470

description:
Breast cancer data.
B270-110661


title: Breast cancer tissue 473

description:
Breast cancer data.
B270-110915


title: Breast cancer tissue 488

description:
Breast cancer data.
B270-111426


title: Breast cancer tissue 476

description:
Breast cancer data.
B270-110949


title: Breast cancer tissue 481

description:
Breast cancer data.
B270-111235


title: Breast cancer tissue 474

description:
Breast cancer data.
B270-110919


title: Breast cancer tissue 484

description:
Breast cancer data.
B270-111352


title: Breast cancer tissue 472

description:
Breast cancer data.
B270-110831


title: Breast cancer tissue 477

description:
Breast cancer data.
B270-110997


title: Breast cancer tissue 479

description:
Breast cancer data.
B270-111142


title: Breast cancer tissue 475

description:
Breast cancer data.
B270-110923


title: Breast cancer tissue 468

description:
Breast cancer data.
B270-110646


title: Breast cancer tissue 469

description:
Breast cancer data.
B270-110656


title: Breast cancer tissue 466

description:
Breast cancer data.
B270-110599


title: Breast cancer tissue 463

description:
Breast cancer data.
B270-110547


title: Breast cancer tissue 464

description:
Breast cancer data.
B270-110556


title: Breast cancer tissue 460

description:
Breast cancer data.
B270-110473


title: Breast cancer tissue 457

description:
Breast cancer data.
B270-110380


title: Breast cancer tissue 462

description:
Breast cancer data.
B270-110512


title: Breast cancer tissue 467

description:
Breast cancer data.
B270-110621


title: Breast cancer tissue 458

description:
Breast cancer data.
B270-110388


title: Breast cancer tissue 471

description:
Breast cancer data.
B270-110770


title: Breast cancer tissue 459

description:
Breast cancer data.
B270-110443


title: Breast cancer tissue 455

description:
Breast cancer data.
B270-110311


title: Breast cancer tissue 456

description:
Breast cancer data.
B270-110362


title: Breast cancer tissue 449

description:
Breast cancer data.
B270-110272


title: Breast cancer tissue 454

description:
Breast cancer data.
B270-110299


title: Breast cancer tissue 453

description:
Breast cancer data.
B270-110298_re


title: Breast cancer tissue 450

description:
Breast cancer data.
B270-110282


title: Breast cancer tissue 452

description:
Breast cancer data.
B270-110295


title: Breast cancer tissue 448

description:
Breast cancer data.
B270-110240


title: Breast cancer tissue 444

description:
Breast cancer data.
B270-110070


title: Breast cancer tissue 446

description:
Breast cancer data.
B270-110134


title: Breast cancer tissue 451

description:
Breast cancer data.
B270-110292


title: Breast cancer tissue 447

description:
Breast cancer data.
B270-110208


title: Breast cancer tissue 443

description:
Breast cancer data.
B270-110040


title: Breast cancer tissue 445

description:
Breast cancer data.
B270-110087


title: Breast cancer tissue 440

description:
Breast cancer data.
B270-101710


title: Breast cancer tissue 441

description:
Breast cancer data.
B270-101715


title: Breast cancer tissue 436

description:
Breast cancer data.
B270-101659


title: Breast cancer tissue 442

description:
Breast cancer data.
B270-110008


title: Breast cancer tissue 438

description:
Breast cancer data.
B270-101674


title: Breast cancer tissue 435

description:
Breast cancer data.
B270-101625


title: Breast cancer tissue 434

description:
Breast cancer data.
B270-101605


title: Breast cancer tissue 430

description:
Breast cancer data.
B270-101548


title: Breast cancer tissue 432

description:
Breast cancer data.
B270-101578


title: Breast cancer tissue 437

description:
Breast cancer data.
B270-101671


title: Breast cancer tissue 429

description:
Breast cancer data.
B270-101544


title: Breast cancer tissue 431

description:
Breast cancer data.
B270-101559


title: Breast cancer tissue 428

description:
Breast cancer data.
B270-101541


title: Breast cancer tissue 433

description:
Breast cancer data.
B270-101585


title: Breast cancer tissue 465

description:
Breast cancer data.
B270-110590


title: Breast cancer tissue 424

description:
Breast cancer data.
B270-101434


title: Breast cancer tissue 425

description:
Breast cancer data.
B270-101494


title: Breast cancer tissue 439

description:
Breast cancer data.
B270-101700


title: Breast cancer tissue 422

description:
Breast cancer data.
B270-101410


title: Breast cancer tissue 427

description:
Breast cancer data.
B270-101529


title: Breast cancer tissue 426

description:
Breast cancer data.
B270-101520


title: Breast cancer tissue 419

description:
Breast cancer data.
B270-101312


title: Breast cancer tissue 421

description:
Breast cancer data.
B270-101377


title: Breast cancer tissue 416

description:
Breast cancer data.
B270-101281


title: Breast cancer tissue 414

description:
Breast cancer data.
B270-101262


title: Breast cancer tissue 417

description:
Breast cancer data.
B270-101295


title: Breast cancer tissue 420

description:
Breast cancer data.
B270-101320


title: Breast cancer tissue 409

description:
Breast cancer data.
B270-101229


title: Breast cancer tissue 415

description:
Breast cancer data.
B270-101270


title: Breast cancer tissue 418

description:
Breast cancer data.
B270-101304


title: Breast cancer tissue 423

description:
Breast cancer data.
B270-101428


title: Breast cancer tissue 410

description:
Breast cancer data.
B270-101239


title: Breast cancer tissue 412

description:
Breast cancer data.
B270-101257


title: Breast cancer tissue 413

description:
Breast cancer data.
B270-101260


title: Breast cancer tissue 407

description:
Breast cancer data.
B270-101186


title: Breast cancer tissue 405

description:
Breast cancer data.
B270-101152


title: Breast cancer tissue 411

description:
Breast cancer data.
B270-101249


title: Breast cancer tissue 408

description:
Breast cancer data.
B270-101217


title: Breast cancer tissue 402

description:
Breast cancer data.
B270-101058


title: Breast cancer tissue 403

description:
Breast cancer data.
B270-101070


title: Breast cancer tissue 399

description:
Breast cancer data.
B270-101012


title: Breast cancer tissue 401

description:
Breast cancer data.
B270-101052


title: Breast cancer tissue 406

description:
Breast cancer data.
B270-101168


title: Breast cancer tissue 404

description:
Breast cancer data.
B270-101116


title: Breast cancer tissue 400

description:
Breast cancer data.
B270-101015_RE


title: Breast cancer tissue 397

description:
Breast cancer data.
B270-100961_RE


title: Breast cancer tissue 398

description:
Breast cancer data.
B270-100991_RE


title: Breast cancer tissue 394

description:
Breast cancer data.
B270-100847


title: Breast cancer tissue 395

description:
Breast cancer data.
B270-100922


title: Breast cancer tissue 389

description:
Breast cancer data.
B270-100665


title: Breast cancer tissue 392

description:
Breast cancer data.
B270-100737


title: Breast cancer tissue 391

description:
Breast cancer data.
B270-100723


title: Breast cancer tissue 396

description:
Breast cancer data.
B270-100946


title: Breast cancer tissue 387

description:
Breast cancer data.
B270-100592


title: Breast cancer tissue 393

description:
Breast cancer data.
B270-100837


title: Breast cancer tissue 386

description:
Breast cancer data.
B270-100583


title: Breast cancer tissue 390

description:
Breast cancer data.
B270-100698


title: Breast cancer tissue 388

description:
Breast cancer data.
B270-100652


title: Breast cancer tissue 384

description:
Breast cancer data.
B270-100395


title: Breast cancer tissue 383

description:
Breast cancer data.
B270-100368


title: Breast cancer tissue 385

description:
Breast cancer data.
B270-100410


title: Breast cancer tissue 461

description:
Breast cancer data.
B270-110495


title: Breast cancer tissue 380

description:
Breast cancer data.
B270-100280


title: Breast cancer tissue 379

description:
Breast cancer data.
B270-100219


title: Breast cancer tissue 382

description:
Breast cancer data.
B270-100325


title: Breast cancer tissue 376

description:
Breast cancer data.
B270-100158


title: Breast cancer tissue 381

description:
Breast cancer data.
B270-100298


title: Breast cancer tissue 371

description:
Breast cancer data.
B270-100025


title: Breast cancer tissue 378

description:
Breast cancer data.
B270-100214


title: Breast cancer tissue 372

description:
Breast cancer data.
B270-100044


title: Breast cancer tissue 373

description:
Breast cancer data.
B270-100057


title: Breast cancer tissue 377

description:
Breast cancer data.
B270-100204


title: Breast cancer tissue 374

description:
Breast cancer data.
B270-100119


title: Breast cancer tissue 375

description:
Breast cancer data.
B270-100155


title: Breast cancer tissue 370

description:
Breast cancer data.
B270-100014


title: Breast cancer tissue 369

description:
Breast cancer data.
B270-091480


title: Breast cancer tissue 367

description:
Breast cancer data.
B270-091468


title: Breast cancer tissue 365

description:
Breast cancer data.
B270-091427


title: Breast cancer tissue 360

description:
Breast cancer data.
B270-091349


title: Breast cancer tissue 357

description:
Breast cancer data.
B270-091292


title: Breast cancer tissue 368

description:
Breast cancer data.
B270-091470


title: Breast cancer tissue 358

description:
Breast cancer data.
B270-091313


title: Breast cancer tissue 363

description:
Breast cancer data.
B270-091415


title: Breast cancer tissue 362

description:
Breast cancer data.
B270-091409


title: Breast cancer tissue 356

description:
Breast cancer data.
B270-091288


title: Breast cancer tissue 353

description:
Breast cancer data.
B270-091227


title: Breast cancer tissue 361

description:
Breast cancer data.
B270-091365


title: Breast cancer tissue 351

description:
Breast cancer data.
B270-091201


title: Breast cancer tissue 355

description:
Breast cancer data.
B270-091286


title: Breast cancer tissue 366

description:
Breast cancer data.
B270-091449


title: Breast cancer tissue 354

description:
Breast cancer data.
B270-091235


title: Breast cancer tissue 347

description:
Breast cancer data.
B270-091124


title: Breast cancer tissue 350

description:
Breast cancer data.
B270-091187


title: Breast cancer tissue 359

description:
Breast cancer data.
B270-091316


title: Breast cancer tissue 364

description:
Breast cancer data.
B270-091417


title: Breast cancer tissue 349

description:
Breast cancer data.
B270-091154


title: Breast cancer tissue 348

description:
Breast cancer data.
B270-091131


title: Breast cancer tissue 352

description:
Breast cancer data.
B270-091222


title: Breast cancer tissue 346

description:
Breast cancer data.
B270-091122


title: Breast cancer tissue 345

description:
Breast cancer data.
B270-091110


title: Breast cancer tissue 338

description:
Breast cancer data.
B270-091038


title: Breast cancer tissue 341

description:
Breast cancer data.
B270-091071


title: Breast cancer tissue 340

description:
Breast cancer data.
B270-091062


title: Breast cancer tissue 343

description:
Breast cancer data.
B270-091092


title: Breast cancer tissue 334

description:
Breast cancer data.
B270-090919


title: Breast cancer tissue 333

description:
Breast cancer data.
B270-090899


title: Breast cancer tissue 330

description:
Breast cancer data.
B270-090876


title: Breast cancer tissue 339

description:
Breast cancer data.
B270-091048


title: Breast cancer tissue 336

description:
Breast cancer data.
B270-090968


title: Breast cancer tissue 327

description:
Breast cancer data.
B270-090854


title: Breast cancer tissue 322

description:
Breast cancer data.
B270-090738


title: Breast cancer tissue 344

description:
Breast cancer data.
B270-091105


title: Breast cancer tissue 323

description:
Breast cancer data.
B270-090764


title: Breast cancer tissue 324

description:
Breast cancer data.
B270-090773


title: Breast cancer tissue 328

description:
Breast cancer data.
B270-090856


title: Breast cancer tissue 326

description:
Breast cancer data.
B270-090822


title: Breast cancer tissue 329

description:
Breast cancer data.
B270-090875


title: Breast cancer tissue 331

description:
Breast cancer data.
B270-090881


title: Breast cancer tissue 337

description:
Breast cancer data.
B270-090990


title: Breast cancer tissue 342

description:
Breast cancer data.
B270-091090


title: Breast cancer tissue 335

description:
Breast cancer data.
B270-090954


title: Breast cancer tissue 332

description:
Breast cancer data.
B270-090882


title: Breast cancer tissue 321

description:
Breast cancer data.
B270-090727


title: Breast cancer tissue 320

description:
Breast cancer data.
B270-090726


title: Breast cancer tissue 325

description:
Breast cancer data.
B270-090812


title: Breast cancer tissue 318

description:
Breast cancer data.
B270-090709


title: Breast cancer tissue 316

description:
Breast cancer data.
B270-090706


title: Breast cancer tissue 317

description:
Breast cancer data.
B270-090708


title: Breast cancer tissue 319

description:
Breast cancer data.
B270-090714


title: Breast cancer tissue 314

description:
Breast cancer data.
B270-090680


title: Breast cancer tissue 315

description:
Breast cancer data.
B270-090703


title: Breast cancer tissue 308

description:
Breast cancer data.
B270-090581


title: Breast cancer tissue 313

description:
Breast cancer data.
B270-090671


title: Breast cancer tissue 311

description:
Breast cancer data.
B270-090656


title: Breast cancer tissue 292

description:
Breast cancer data.
B270-090331


title: Breast cancer tissue 298

description:
Breast cancer data.
B270-090401


title: Breast cancer tissue 304

description:
Breast cancer data.
B270-090522


title: Breast cancer tissue 300

description:
Breast cancer data.
B270-090425


title: Breast cancer tissue 305

description:
Breast cancer data.
B270-090538


title: Breast cancer tissue 294

description:
Breast cancer data.
B270-090363


title: Breast cancer tissue 310

description:
Breast cancer data.
B270-090632


title: Breast cancer tissue 309

description:
Breast cancer data.
B270-090596


title: Breast cancer tissue 299

description:
Breast cancer data.
B270-090402


title: Breast cancer tissue 303

description:
Breast cancer data.
B270-090480


title: Breast cancer tissue 293

description:
Breast cancer data.
B270-090358


title: Breast cancer tissue 307

description:
Breast cancer data.
B270-090563


title: Breast cancer tissue 312

description:
Breast cancer data.
B270-090663


title: Breast cancer tissue 297

description:
Breast cancer data.
B270-090386


title: Breast cancer tissue 302

description:
Breast cancer data.
B270-090460


title: Breast cancer tissue 291

description:
Breast cancer data.
B270-090261


title: Breast cancer tissue 296

description:
Breast cancer data.
B270-090381


title: Breast cancer tissue 301

description:
Breast cancer data.
B270-090452


title: Breast cancer tissue 290

description:
Breast cancer data.
B270-090246


title: Breast cancer tissue 288

description:
Breast cancer data.
B270-090195


title: Breast cancer tissue 306

description:
Breast cancer data.
B270-090549


title: Breast cancer tissue 295

description:
Breast cancer data.
B270-090372


title: Breast cancer tissue 289

description:
Breast cancer data.
B270-090245


title: Breast cancer tissue 285

description:
Breast cancer data.
B270-090141


title: Breast cancer tissue 281

description:
Breast cancer data.
B270-090054


title: Breast cancer tissue 287

description:
Breast cancer data.
B270-090167


title: Breast cancer tissue 283

description:
Breast cancer data.
B270-090093


title: Breast cancer tissue 269

description:
Breast cancer data.
B270-081151


title: Breast cancer tissue 265

description:
Breast cancer data.
B270-081072


title: Breast cancer tissue 282

description:
Breast cancer data.
B270-090087


title: Breast cancer tissue 267

description:
Breast cancer data.
B270-081137


title: Breast cancer tissue 275

description:
Breast cancer data.
B270-081296


title: Breast cancer tissue 264

description:
Breast cancer data.
B270-081071


title: Breast cancer tissue 286

description:
Breast cancer data.
B270-090146


title: Breast cancer tissue 277

description:
Breast cancer data.
B270-090013


title: Breast cancer tissue 268

description:
Breast cancer data.
B270-081140


title: Breast cancer tissue 266

description:
Breast cancer data.
B270-081075


title: Breast cancer tissue 263

description:
Breast cancer data.
B270-081069


title: Breast cancer tissue 271

description:
Breast cancer data.
B270-081217


title: Breast cancer tissue 279

description:
Breast cancer data.
B270-090033


title: Breast cancer tissue 260

description:
Breast cancer data.
B270-081054


title: Breast cancer tissue 270

description:
Breast cancer data.
B270-081190


title: Breast cancer tissue 262

description:
Breast cancer data.
B270-081064


title: Breast cancer tissue 274

description:
Breast cancer data.
B270-081273


title: Breast cancer tissue 278

description:
Breast cancer data.
B270-090024


title: Breast cancer tissue 272

description:
Breast cancer data.
B270-081238


title: Breast cancer tissue 276

description:
Breast cancer data.
B270-081329


title: Breast cancer tissue 261

description:
Breast cancer data.
B270-081059


title: Breast cancer tissue 273

description:
Breast cancer data.
B270-081250


title: Breast cancer tissue 259

description:
Breast cancer data.
B270-081040


title: Breast cancer tissue 280

description:
Breast cancer data.
B270-090045


title: Breast cancer tissue 284

description:
Breast cancer data.
B270-090140


title: Breast cancer tissue 258

description:
Breast cancer data.
B270-080987


title: Breast cancer tissue 254

description:
Breast cancer data.
B270-080932


title: Breast cancer tissue 256

description:
Breast cancer data.
B270-080956


title: Breast cancer tissue 253

description:
Breast cancer data.
B270-080924


title: Breast cancer tissue 249

description:
Breast cancer data.
B270-080870


title: Breast cancer tissue 250

description:
Breast cancer data.
B270-080871


title: Breast cancer tissue 255

description:
Breast cancer data.
B270-080934


title: Breast cancer tissue 252

description:
Breast cancer data.
B270-080922


title: Breast cancer tissue 248

description:
Breast cancer data.
B270-080860


title: Breast cancer tissue 257

description:
Breast cancer data.
B270-080967


title: Breast cancer tissue 251

description:
Breast cancer data.
B270-080914


title: Breast cancer tissue 244

description:
Breast cancer data.
B270-080813


title: Breast cancer tissue 243

description:
Breast cancer data.
B270-080798


title: Breast cancer tissue 241

description:
Breast cancer data.
B270-080794


title: Breast cancer tissue 242

description:
Breast cancer data.
B270-080796


title: Breast cancer tissue 231

description:
Breast cancer data.
B270-080703


title: Breast cancer tissue 238

description:
Breast cancer data.
B270-080752


title: Breast cancer tissue 237

description:
Breast cancer data.
B270-080727


title: Breast cancer tissue 233

description:
Breast cancer data.
B270-080706


title: Breast cancer tissue 245

description:
Breast cancer data.
B270-080835


title: Breast cancer tissue 232

description:
Breast cancer data.
B270-080704


title: Breast cancer tissue 235

description:
Breast cancer data.
B270-080716


title: Breast cancer tissue 247

description:
Breast cancer data.
B270-080855


title: Breast cancer tissue 234

description:
Breast cancer data.
B270-080712


title: Breast cancer tissue 240

description:
Breast cancer data.
B270-080765


title: Breast cancer tissue 239

description:
Breast cancer data.
B270-080753


title: Breast cancer tissue 229

description:
Breast cancer data.
B270-080692


title: Breast cancer tissue 225

description:
Breast cancer data.
B270-080619


title: Breast cancer tissue 227

description:
Breast cancer data.
B270-080628_2


title: Breast cancer tissue 224

description:
Breast cancer data.
B270-080594


title: Breast cancer tissue 226

description:
Breast cancer data.
B270-080622


title: Breast cancer tissue 228

description:
Breast cancer data.
B270-080671


title: Breast cancer tissue 230

description:
Breast cancer data.
B270-080700


title: Breast cancer tissue 246

description:
Breast cancer data.
B270-080838


title: Breast cancer tissue 220

description:
Breast cancer data.
B270-080533


title: Breast cancer tissue 223

description:
Breast cancer data.
B270-080591


title: Breast cancer tissue 218

description:
Breast cancer data.
B270-080496


title: Breast cancer tissue 219

description:
Breast cancer data.
B270-080502


title: Breast cancer tissue 221

description:
Breast cancer data.
B270-080540


title: Breast cancer tissue 214

description:
Breast cancer data.
B270-080433


title: Breast cancer tissue 222

description:
Breast cancer data.
B270-080566


title: Breast cancer tissue 206

description:
Breast cancer data.
B270-080287


title: Breast cancer tissue 215

description:
Breast cancer data.
B270-080440


title: Breast cancer tissue 216

description:
Breast cancer data.
B270-080462


title: Breast cancer tissue 213

description:
Breast cancer data.
B270-080415


title: Breast cancer tissue 204

description:
Breast cancer data.
B270-080255


title: Breast cancer tissue 211

description:
Breast cancer data.
B270-080370


title: Breast cancer tissue 203

description:
Breast cancer data.
B270-080249


title: Breast cancer tissue 209

description:
Breast cancer data.
B270-080362


title: Breast cancer tissue 217

description:
Breast cancer data.
B270-080484


title: Breast cancer tissue 207

description:
Breast cancer data.
B270-080290


title: Breast cancer tissue 210

description:
Breast cancer data.
B270-080369


title: Breast cancer tissue 212

description:
Breast cancer data.
B270-080386


title: Breast cancer tissue 202

description:
Breast cancer data.
B270-080241


title: Breast cancer tissue 208

description:
Breast cancer data.
B270-080309


title: Breast cancer tissue 205

description:
Breast cancer data.
B270-080275


title: Breast cancer tissue 200

description:
Breast cancer data.
B270-080161


title: Breast cancer tissue 201

description:
Breast cancer data.
B270-080216


title: Breast cancer tissue 198

description:
Breast cancer data.
B270-080136


title: Breast cancer tissue 194

description:
Breast cancer data.
B270-080078


title: Breast cancer tissue 197

description:
Breast cancer data.
B270-080132


title: Breast cancer tissue 192

description:
Breast cancer data.
B270-080060


title: Breast cancer tissue 196

description:
Breast cancer data.
B270-080116


title: Breast cancer tissue 193

description:
Breast cancer data.
B270-080070


title: Breast cancer tissue 199

description:
Breast cancer data.
B270-080160


title: Breast cancer tissue 195

description:
Breast cancer data.
B270-080114


title: Breast cancer tissue 190

description:
Breast cancer data.
B270-080017


title: Breast cancer tissue 188

description:
Breast cancer data.
B270-071198


title: Breast cancer tissue 185

description:
Breast cancer data.
B270-071108


title: Breast cancer tissue 182

description:
Breast cancer data.
B270-071065


title: Breast cancer tissue 184

description:
Breast cancer data.
B270-071083


title: Breast cancer tissue 191

description:
Breast cancer data.
B270-080058


title: Breast cancer tissue 186

description:
Breast cancer data.
B270-071128


title: Breast cancer tissue 189

description:
Breast cancer data.
B270-080016


title: Breast cancer tissue 178

description:
Breast cancer data.
B270-071028


title: Breast cancer tissue 177

description:
Breast cancer data.
B270-071023


title: Breast cancer tissue 175

description:
Breast cancer data.
B270-070996


title: Breast cancer tissue 176

description:
Breast cancer data.
B270-071021


title: Breast cancer tissue 183

description:
Breast cancer data.
B270-071076


title: Breast cancer tissue 181

description:
Breast cancer data.
B270-071062


title: Breast cancer tissue 187

description:
Breast cancer data.
B270-071167


title: Breast cancer tissue 180

description:
Breast cancer data.
B270-071045


title: Breast cancer tissue 174

description:
Breast cancer data.
B270-070969


title: Breast cancer tissue 173

description:
Breast cancer data.
B270-070966


title: Breast cancer tissue 179

description:
Breast cancer data.
B270-071038


title: Breast cancer tissue 170

description:
Breast cancer data.
B270-070867


title: Breast cancer tissue 171

description:
Breast cancer data.
B270-070925


title: Breast cancer tissue 168

description:
Breast cancer data.
B270-070861


title: Breast cancer tissue 172

description:
Breast cancer data.
B270-070949


title: Breast cancer tissue 169

description:
Breast cancer data.
B270-070863


title: Breast cancer tissue 165

description:
Breast cancer data.
B270-070835


title: Breast cancer tissue 164

description:
Breast cancer data.
B270-070829


title: Breast cancer tissue 236

description:
Breast cancer data.
B270-080721


title: Breast cancer tissue 162

description:
Breast cancer data.
B270-070792


title: Breast cancer tissue 160

description:
Breast cancer data.
B270-070769


title: Breast cancer tissue 167

description:
Breast cancer data.
B270-070854


title: Breast cancer tissue 161

description:
Breast cancer data.
B270-070770


title: Breast cancer tissue 159

description:
Breast cancer data.
B270-070731


title: Breast cancer tissue 155

description:
Breast cancer data.
B270-070660


title: Breast cancer tissue 166

description:
Breast cancer data.
B270-070836


title: Breast cancer tissue 158

description:
Breast cancer data.
B270-070722


title: Breast cancer tissue 157

description:
Breast cancer data.
B270-070720


title: Breast cancer tissue 156

description:
Breast cancer data.
B270-070701


title: Breast cancer tissue 163

description:
Breast cancer data.
B270-070810


title: Breast cancer tissue 153

description:
Breast cancer data.
B270-070641


title: Breast cancer tissue 151

description:
Breast cancer data.
B270-070634


title: Breast cancer tissue 147

description:
Breast cancer data.
B270-070574


title: Breast cancer tissue 154

description:
Breast cancer data.
B270-070649


title: Breast cancer tissue 150

description:
Breast cancer data.
B270-070625


title: Breast cancer tissue 146

description:
Breast cancer data.
B270-070562


title: Breast cancer tissue 152

description:
Breast cancer data.
B270-070639


title: Breast cancer tissue 140

description:
Breast cancer data.
B270-070505


title: Breast cancer tissue 143

description:
Breast cancer data.
B270-070540


title: Breast cancer tissue 144

description:
Breast cancer data.
B270-070550


title: Breast cancer tissue 141

description:
Breast cancer data.
B270-070507


title: Breast cancer tissue 138

description:
Breast cancer data.
B270-070498


title: Breast cancer tissue 142

description:
Breast cancer data.
B270-070509


title: Breast cancer tissue 149

description:
Breast cancer data.
B270-070596


title: Breast cancer tissue 136

description:
Breast cancer data.
B270-070476


title: Breast cancer tissue 137

description:
Breast cancer data.
B270-070495


title: Breast cancer tissue 148

description:
Breast cancer data.
B270-070589


title: Breast cancer tissue 139

description:
Breast cancer data.
B270-070501


title: Breast cancer tissue 145

description:
Breast cancer data.
B270-070555


title: Breast cancer tissue 133

description:
Breast cancer data.
B270-070449


title: Breast cancer tissue 129

description:
Breast cancer data.
B270-070305


title: Breast cancer tissue 127

description:
Breast cancer data.
B270-070262


title: Breast cancer tissue 132

description:
Breast cancer data.
B270-070410


title: Breast cancer tissue 130

description:
Breast cancer data.
B270-070329


title: Breast cancer tissue 128

description:
Breast cancer data.
B270-070291


title: Breast cancer tissue 126

description:
Breast cancer data.
B270-070248


title: Breast cancer tissue 131

description:
Breast cancer data.
B270-070382


title: wt replicate-2

city: Pune

first: Dhanasekaran

last: Shanmugam

state: Maharashtra

address: Dr. Homi Bhabha Road

department: Biochemical Sciences Division

country: India

institute: CSIR-National Chemical Laboratory

hyb_protocol: Standard Affymetrix hyb protocol

scan_protocol: Affymetrix GeneChip scanner

data_processing: Microarray Suite version 5.0 (MAS 5.0) was used with Affymetrix default settings for analysis.

organism: Toxoplasma gondii

source_name: Tg∆ku80 tachyzoites

label_protocol: Amplification was done using the Nugen Ovation kit and labeling was done using the Affymetrix GeneChip IVT labeling kit

growth_protocol: T. gondii parasites were grown in culture using human foreskin fibroblast as host cells. The culture medium used is standard DMEM supplemented with 1% dialyzed FBS, 25 mM HEPES, 2 mM glutamax and 1X antibiotics. Heavily infected HFF monolayers are washed after 3 hours to remove uninvaded parasites. After 48 hours of growth, the infected monolayers are scrapped and physically lysed to harvest parasites for microarray analysis.

extract_protocol: Total RNA was extracted using the RNeasy Qiagen kit following manufacturer's protocol.

treatment_protocol: No treatments were done. Gene expression was measured in wt and hexokinase mutant parasites growing in optimal growth conditions.

tag: genotype/variation

value: wild type


title: Breast cancer tissue 135

description:
Breast cancer data.
B270-070474


title: Breast cancer tissue 125

description:
Breast cancer data.
B270-070234


title: wt replicate-1


title: ∆hk replicate-2

source_name: Tg∆ku80∆hk tachyzoites

value: hexokinase knockout mutant


title: Breast cancer tissue 134

description:
Breast cancer data.
B270-070457


title: ∆hk replicate-3


title: Breast cancer tissue 121

description:
Breast cancer data.
B270-070204


title: Breast cancer tissue 124

description:
Breast cancer data.
B270-070232


title: Breast cancer tissue 119

description:
Breast cancer data.
B270-070183


title: Breast cancer tissue 123

description:
Breast cancer data.
B270-070220


title: Breast cancer tissue 116

description:
Breast cancer data.
B270-061074


title: Breast cancer tissue 118

description:
Breast cancer data.
B270-070076


title: Breast cancer tissue 115

description:
Breast cancer data.
B270-061032


title: Breast cancer tissue 120

description:
Breast cancer data.
B270-070186


title: Breast cancer tissue 122

description:
Breast cancer data.
B270-070212


title: ∆hk replicate-1


title: Breast cancer tissue 114

description:
Breast cancer data.
B270-061003


title: SRF-WT-pilo animal 1

city: Ulm

first: Bernd

last: Knoell

address: Albert-Einstein Allee 11

country: Germany

institute: Ulm University

hyb_protocol: Labeled ssDNA was hybridized to Mouse Gene 1.0 ST Affymetrix GeneChip arrays (Affymetrix, Santa Clara, CA).

scan_protocol: The chips were scanned with a Affymetrix GeneChip Scanner 3000 according to the Affimetrix protocol.

data_processing: The microarray data were processed using Affymetrix® Expression Console™ Software  using RMA normalization protocol.

organism: Mus musculus

source_name: hippocampus

label_protocol: The total RNAs were amplified and labeled following the Whole Transcript (WT) Sense Target Labeling Assay (http://www.affymetrix.com).

growth_protocol: Adult mice (7-10 weeks) were used

extract_protocol: Total RNA was isolated with RNeasy mini kit (QIAGEN) according to the manufacturers instruction.

treatment_protocol: Animals received an intra-peritoneal injection of pilocarpine hydrochloride (335 or 350 mg/kg; Sigma, Germany) to induce an SE. Littermate control mice were injected with Ringer solution. Diazepam (4 mg/kg, s.c.; Ratiopharm, Germany) was administered to the animals 40 min after the onset of SE to terminate seizures

value: brain

value: Control

tag: treatment

value: with seizure


title: SRF-WT-pilo animal 3


title: Breast cancer tissue 113

description:
Breast cancer data.
B270-060997


title: SRF-WT-control animal 3

value: no seizure


title: Breast cancer tissue 111

description:
Breast cancer data.
B270-060945


title: Breast cancer tissue 117

description:
Breast cancer data.
B270-070033


title: Breast cancer tissue 112

description:
Breast cancer data.
B270-060972


title: SRF-WT-pilo animal 2


title: Breast cancer tissue 108

description:
Breast cancer data.
B270-060916


title: SRF-WT-control animal 2


title: SRF-KO-pilo animal 3

value: Srf mutant


title: Breast cancer tissue 109

description:
Breast cancer data.
B270-060921


title: SRF-WT-control animal 1


title: SRF-KO-pilo animal 2


title: Breast cancer tissue 110

description:
Breast cancer data.
B270-060922


title: SRF-KO-control animal 2


title: Breast cancer tissue 107

description:
Breast cancer data.
B270-060889


title: Breast cancer tissue 106

description:
Breast cancer data.
B270-060881


title: SRF-KO-pilo animal 1


title: Breast cancer tissue 103

description:
Breast cancer data.
B270-060857


title: Breast cancer tissue 105

description:
Breast cancer data.
B270-060880


title: Breast cancer tissue 100

description:
Breast cancer data.
B270-060715


title: SRF-KO-control animal 1


title: Breast cancer tissue 104

description:
Breast cancer data.
B270-060867


title: Breast cancer tissue 98

description:
Breast cancer data.
B270-060689


title: Breast cancer tissue 96

description:
Breast cancer data.
B270-060681


title: Breast cancer tissue 87

description:
Breast cancer data.
B270-060577


title: SRF-KO-control animal 3


title: Breast cancer tissue 91

description:
Breast cancer data.
B270-060608


title: Breast cancer tissue 88

description:
Breast cancer data.
B270-060593


title: Breast cancer tissue 85

description:
Breast cancer data.
B270-060518


title: Breast cancer tissue 93

description:
Breast cancer data.
B270-060634


title: Breast cancer tissue 95

description:
Breast cancer data.
B270-060667


title: Breast cancer tissue 102

description:
Breast cancer data.
B270-060796


title: Breast cancer tissue 94

description:
Breast cancer data.
B270-060649


title: Breast cancer tissue 89

description:
Breast cancer data.
B270-060600


title: Breast cancer tissue 101

description:
Breast cancer data.
B270-060725


title: Breast cancer tissue 92

description:
Breast cancer data.
B270-060631


title: Breast cancer tissue 83

description:
Breast cancer data.
B270-060501


title: Breast cancer tissue 97

description:
Breast cancer data.
B270-060684


title: Breast cancer tissue 84

description:
Breast cancer data.
B270-060514


title: Breast cancer tissue 90

description:
Breast cancer data.
B270-060602


title: Breast cancer tissue 86

description:
Breast cancer data.
B270-060543


title: Breast cancer tissue 82

description:
Breast cancer data.
B270-060479


title: Breast cancer tissue 99

description:
Breast cancer data.
B270-060699


title: Breast cancer tissue 78

description:
Breast cancer data.
B270-060424


title: Breast cancer tissue 81

description:
Breast cancer data.
B270-060463


title: Breast cancer tissue 77

description:
Breast cancer data.
B270-060414


title: Breast cancer tissue 76

description:
Breast cancer data.
B270-060410


title: Breast cancer tissue 69

description:
Breast cancer data.
B270-060357


title: Ju1580DRH1_inf1

city: Cambridge

first: Eric

middle: Alexander

last: Miska

address: Tennis Court Road

department: Gurdon Institute

country: United Kingdom

institute: University of Cambridge

hyb_protocol: labelling, hybridisation and scanning was carried out by the University of Cambridge Institute of Metabolic Sciences microarray facility

data_processing: The Bioconductor package was used to generate RMA normalized values for each probe [R ver 2.14 and Bioconductor ver 2.10, package affy].

label: Biotin

organism: Caenorhabditis elegans

source_name: JU1580+N2drh1 Orsay infected

growth_protocol: C.elegans were grown under standard conditions at 20C The food source used was E. coli strain HB101 (Caenorhabditis Genetics Center, University of Minnesota, Twin Cities, MN, USA). Uninfected animals were picked as L4s.  Virus or control solution was added after 24 hrs and RNA was harvested 4 days later

extract_protocol: Total RNA was extracted using Trizol

treatment_protocol: Infection with Orsay virus for 4 days at 20C

tag: strain

tag: infected with

value: Orsay


title: Breast cancer tissue 70

description:
Breast cancer data.
B270-060358


title: Ju1580_uninf3

scan_protocol: labelling, hybridisation and scanning was carried out by the University of Cambridge Institute of Metabolic Sciences microarray facility

source_name: JU1580 Orsay uninfected


title: JU1580DRH1_uninf2

source_name: JU1580+N2drh1 Orsay uninfected

label_protocol: labelling, hybridisation and scanning was carried out by the University of Cambridge Institute of Metabolic Sciences microarray facility


title: Breast cancer tissue 80

description:
Breast cancer data.
B270-060462


title: JU1580DRH1_inf2


title: JU1580DRH1_uninf3


title: Ju1580_inf2

source_name: JU1580 Orsay infected


title: Breast cancer tissue 64

description:
Breast cancer data.
B270-060279


title: Breast cancer tissue 67

description:
Breast cancer data.
B270-060329


title: Breast cancer tissue 66

description:
Breast cancer data.
B270-060315


title: Breast cancer tissue 73

description:
Breast cancer data.
B270-060364


title: Breast cancer tissue 75

description:
Breast cancer data.
B270-060406


title: JU1580DRH1_inf3


title: JU1580DRH1_uninf1


title: Breast cancer tissue 68

description:
Breast cancer data.
B270-060330


title: Breast cancer tissue 63

description:
Breast cancer data.
B270-060269


title: Breast cancer tissue 71

description:
Breast cancer data.
B270-060360


title: Breast cancer tissue 74

description:
Breast cancer data.
B270-060392


title: Breast cancer tissue 72

description:
Breast cancer data.
B270-060362


title: Breast cancer tissue 79

description:
Breast cancer data.
B270-060454


title: Ju1580_inf3


title: Ju1580_uninf1


title: Drh1_uninf_2

source_name: drh1 Orsay uninfected


title: Ju1580_inf1


title: Breast cancer tissue 56

description:
Breast cancer data.
B270-060136


title: Breast cancer tissue 54

description:
Breast cancer data.
B270-060081


title: Breast cancer tissue 62

description:
Breast cancer data.
B270-060234


title: N2_uninf_1

source_name: N2 Orsay uninfected


title: Breast cancer tissue 59

description:
Breast cancer data.
B270-060192


title: Breast cancer tissue 58

description:
Breast cancer data.
B270-060178


title: Breast cancer tissue 61

description:
Breast cancer data.
B270-060224


title: Breast cancer tissue 55

description:
Breast cancer data.
B270-060132


title: Breast cancer tissue 60

description:
Breast cancer data.
B270-060209


title: Drh1_inf_2

source_name: drh1 Orsay infected


title: Drh1_uninf_1


title: N2_uninf_3


title: Drh1_inf_1


title: N2_inf_2

source_name: N2 Orsay infected


title: Drh1_uninf_3


title: Breast cancer tissue 53

description:
Breast cancer data.
B270-060024


title: Breast cancer tissue 51

description:
Breast cancer data.
B270-060011


title: Breast cancer tissue 52

description:
Breast cancer data.
B270-060015


title: N2_unif_2


title: Breast cancer tissue 65

description:
Breast cancer data.
B270-060283


title: N2_inf_3


title: Breast cancer tissue 57

description:
Breast cancer data.
B270-060142


title: Drh1_inf_3


title: N2_inf_1


title: Breast cancer tissue 47

description:
Breast cancer data.
B270-051080


title: Breast cancer tissue 45

description:
Breast cancer data.
B270-050998


title: Breast cancer tissue 44

description:
Breast cancer data.
B270-050960


title: Breast cancer tissue 48

description:
Breast cancer data.
B270-051099


title: Breast cancer tissue 50

description:
Breast cancer data.
B270-051114


title: Breast cancer tissue 49

description:
Breast cancer data.
B270-051101


title: Ju1580_uninf2


title: Breast cancer tissue 35

description:
Breast cancer data.
B270-050665


title: Breast cancer tissue 32

description:
Breast cancer data.
B270-050639


title: Breast cancer tissue 33

description:
Breast cancer data.
B270-050660


title: Breast cancer tissue 28

description:
Breast cancer data.
B270-050525


title: Breast cancer tissue 43

description:
Breast cancer data.
B270-050957


title: Breast cancer tissue 42

description:
Breast cancer data.
B270-050945


title: Breast cancer tissue 34

description:
Breast cancer data.
B270-050664


title: Breast cancer tissue 41

description:
Breast cancer data.
B270-050867


title: Breast cancer tissue 26

description:
Breast cancer data.
B270-050486


title: Breast cancer tissue 29

description:
Breast cancer data.
B270-050564


title: Breast cancer tissue 38

description:
Breast cancer data.
B270-050743


title: Breast cancer tissue 30

description:
Breast cancer data.
B270-050565


title: Breast cancer tissue 39

description:
Breast cancer data.
B270-050808


title: Breast cancer tissue 46

description:
Breast cancer data.
B270-051042


title: Breast cancer tissue 37

description:
Breast cancer data.
B270-050729


title: Breast cancer tissue 40

description:
Breast cancer data.
B270-050857


title: Breast cancer tissue 31

description:
Breast cancer data.
B270-050616


title: Breast cancer tissue 27

description:
Breast cancer data.
B270-050513


title: Breast cancer tissue 16

description:
Breast cancer data.
B270-050315


title: Breast cancer tissue 24

description:
Breast cancer data.
B270-050456


title: Breast cancer tissue 25

description:
Breast cancer data.
B270-050465


title: Breast cancer tissue 17

description:
Breast cancer data.
B270-050326


title: Breast cancer tissue 36

description:
Breast cancer data.
B270-050708


title: Breast cancer tissue 21

description:
Breast cancer data.
B270-050383


title: Breast cancer tissue 22

description:
Breast cancer data.
B270-050411


title: Breast cancer tissue 23

description:
Breast cancer data.
B270-050439


title: Breast cancer tissue 11

description:
Breast cancer data.
B270-050162


title: Breast cancer tissue 20

description:
Breast cancer data.
B270-050359


title: Breast cancer tissue 12

description:
Breast cancer data.
B270-050217


title: Breast cancer tissue 8

description:
Breast cancer data.
B270-050095


title: Breast cancer tissue 14

description:
Breast cancer data.
B270-050302


title: Breast cancer tissue 18

description:
Breast cancer data.
B270-050355


title: Breast cancer tissue 7

description:
Breast cancer data.
B270-050092


title: Breast cancer tissue 2

description:
Breast cancer data.
B270-050044


title: Breast cancer tissue 6

description:
Breast cancer data.
B270-050089


title: Breast cancer tissue 1

description:
Breast cancer data.
B270-050008


title: Breast cancer tissue 13

description:
Breast cancer data.
B270-050262


title: Breast cancer tissue 10

description:
Breast cancer data.
B270-050136


title: LPS/LPS 3

status: Public on Aug 10 2017

city: Indianapolis

first: Takashi

last: Hato

state: IN

address: 950 W. Walnut St. R2 202

department: Medicine

country: USA

institute: Indiana University

hyb_protocol: samples were hybridized to the Mouse Gene 2.0 ST GeneChips® for 17 hours then washed, stained and scanned with the standard protocol

scan_protocol: Chips scanned with the standard protocol using Affymetrix GeneChip® Command Console Software (AGCC) to generate data (CEL files)

data_processing:
Affymetrix GeneChip® Command Console Software (AGCC) to generate data (CEL files).CEL files were imported into Partek Genomics Suite 6.6 (Partek, Inc., St. Louis, Mo) for analysis. RMA  (Robust multichip average, Bolstad, 2003) expression levels were generated for all probe sets using the RMA background correction, Quantile normalization and summarization by Median Polish. Summarized signals for each probe set were log2 transformed.
probe group file: MoGene-2_0-st.pgf
meta-probeset file: MoGene-2_0-st.mps

source_name: LPS/LPS_S1 kidney tubule

label_protocol: 2 ng of total RNA for each sample was labeled using the standard protocol for the Affymetrix WT Pico kit (Affymetrix, Santa Clara, CA)

extract_protocol: RNA was extracted using PicoPure RNA kit (Life Technologies) and further concentrated using isopropanol precipication.

treatment_protocol: Non-preconditioned mice were subjected to single-dose 5 mg/kg lipopolysaccharide (0111:B4, LPS) intraperitoneally for 24 hours. Preconditioned mice were subjected to 0.25 mg/kg LPS followed 24 hour later by 5 mg/kg LPS (LPS/LPS). Control mice received an equivalent volume of sterile normal saline vehicle. .

tag: strain background

value: male

value: LPS 5 ug+LPS 100 ug

tag: timepoint

value: 24h after LPS 100 ug

value: S1 kidney tubule


title: Breast cancer tissue 3

description:
Breast cancer data.
B270-050054


title: LPS/LPS 5


title: sham 4

source_name: control_S1 kidney tubule

value: baseline control

value: control


title: LPS 1

source_name: LPS_S1 kidney tubule

value: LPS 100 ug


title: LPS/LPS 1


title: LPS/LPS 4


title: LPS/LPS 2


title: Breast cancer tissue 15

description:
Breast cancer data.
B270-050304

value: primary breast cancer

value: female


title: Breast cancer tissue 4

description:
Breast cancer data.
B270-050059

value: MRM


title: LPS 2


title: Breast cancer tissue 9

description:
Breast cancer data.
B270-050135


title: LPS 3


title: LPS 4


title: Breast cancer tissue 19

description:
Breast cancer data.
B270-050358


title: Breast cancer tissue 5

description:
Breast cancer data.
B270-050066


title: IJ_194_A7

city: Boston

first: Seung

middle: Kyum

last: Kim

state: MA

address: 15 Kneeland st.

department: Molecular Cardiology Research Institute

institute: Tufts Medical Center

description: aortic mRNA expression data

hyb_protocol: Reverse-transcribed aortic mRNA was hybridized to Mouse Genome 430A 2.0 microarrays (Affymetrix, Santa Clara, CA) at the Boston University Medical School Center for Genetics and Genomics.

scan_protocol: Not provided

data_processing: Raw Affymetrix CEL files were normalized to produce gene-level expression values using the implementation of the Robust Multiarray Average (RMA) in the affy package included within in the Bioconductor software suite (version 2.10.0). An Entrez Gene-specific probeset mapping from BrainArray (version 14.0.0) was used to normalize the Mouse Gene 1.0 ST microarrays, whereas the default Affymetrix probeset mapping (also obtained from Bioconductor version 2.10.0) was used to normalize the mRNA 2.0 microarray. Differential gene expression was assessed with the limma package by creating linear models or using the empirical Bayes (moderated) t test. Correction for multiple hypothesis testing was accomplished using the Benjamini-Hochberg false discovery rate (FDR). All microarray analyses were performed using the R environment for statistical computing (version 2.12.0)

source_name: AORTA

label_protocol: Not provided

extract_protocol: Total aortic mRNA was extracted from 3 or 12 month old mice using QIAzol, followed by column purification.

value: aorta

tag: genotype

value: MR-knockout

tag: developmental stage

value: aged


title: IJ_410_A8

description: aortic mRNA expression data


title: IJ_182_A2

description: aortic mRNA expression data

value: wildtype


title: IJ_8_A1

description: aortic mRNA expression data


title: IJ_4690_B1

description: aortic mRNA expression data

value: young


title: IJ_409_A4

description: aortic mRNA expression data


title: IJ_4705_B3

description: aortic mRNA expression data


title: T47D_electroporation_pCDNA

city: Beijing

first: Songdong

last: Meng

address: NO.1 Beichen West Road, Chaoyang District

country: China

institute: nstitute Of Microbiology Chinese Academy of Sciences

description: pCDNA

hyb_protocol: Each slide was hybridized with 1.65μg Cy3-labeled cRNA using Gene Expression   Hybridization Kit (Cat.# 5188-5242, Agilent technologies, Santa Clara, CA, US) in   Hybridization Oven (Cat.# G2545A, Agilent technologies, Santa Clara, CA, US), according   to the manufacturer’s instructions. After 17 hours hybridization, slides were washed in   staining dishes (Cat.# 121, Thermo Shandon, Waltham, MA, US) with Gene Expression   Wash Buffer Kit(Cat.# 5188-5327, Agilent technologies, Santa Clara, CA, US), followed the manufacturer’s instructions.

scan_protocol: Slides were scanned by Agilent Microarray Scanner (Cat#G2565CA, Agilent   technologies, Santa Clara, CA, US) with default settings, Dye channel: Green, Scan   resolution=5μm, PMT 100%, 10%, 16bit. Data were extracted with Feature Extraction   software 10.7 (Agilent technologies, Santa Clara, CA, US). Raw data were normalized by   Quantile algorithm, GeneSpring Software 11.0 (Agilent technologies, Santa Clara, CA,   US).

label_protocol: Total RNA was amplified and labeled by Low Input Quick Amp Labeling Kit,   One-Color (Cat.# 5190-2305, Agilent technologies, Santa Clara, CA, US), following the   manufacturer’s instructions. Labeled cRNA were purified by RNeasy mini kit (Cat.# 74106,   QIAGEN, GmBH, Germany).

growth_protocol: T47D cell line was cultured with RPMI1640 supplemented with 10% fetal bovine serum.

extract_protocol: Total RNA was extracted using TRIZOL Reagent (Cat#15596-018 ， Life technologies, Carlsbad, CA, US) following the manufacturer’s instructions and checked for a RIN number to inspect RNA integrity by an Agilent Bioanalyzer 2100   (Agilent technologies, Santa Clara, CA, US). Qualified total RNA was further purified   by RNeasy micro kit (Cat#74004, QIAGEN, GmBH, Germany) and RNase-Free   DNase Set (Cat#79254, QIAGEN, GmBH, Germany).

treatment_protocol: T47D cells transfected with pcDNA3.1 plasmid containing HER2 3’-UTR or the empty pcDNA3.1 vector (3.1) as a mock.

tag: cell line

tag: transfected with


title: T47D_electroporation_pCDNA-HER2-3'UTR

data_processing:
Data were extracted with Feature Extraction software 10.7 (Agilent technologies, Santa Clara, CA, US).
Raw data were normalized by Quantile algorithm, GeneSpring Software 11.0 (Agilent technologies, Santa Clara, CA, US).

value: pCDNA3.1-HER2 3’-UTR


title: Th17_WT_1

city: Seoul

first: Gap Ryol

last: Lee

address: 35 Baekbeom-ro, Mapo-gu

department: Department of Life Science

country: South Korea

institute: Sogang University

description: Gene expression data from CD4 T cells in Th17 polarizing condition

hyb_protocol: Approximately 5.5 μg of labeled DNA target was hybridized to the Affymetrix GeneChip Array at 45°C for 16hour

scan_protocol: Hybridized arrays were washed and stained on a GeneChip Fluidics Station 450 and scanned on a GCS3000 Scanner (Affymetrix).

data_processing: Array data export processing and analysis was performed using Affymetrix® GeneChip Command Console® Software (AGCC)

source_name: Naïve CD4 T cells polarized in Th17 condition for 3 days

label_protocol: The sense cDNA was then fragmented and biotin-labeled with TdT (terminal deoxynucleotidyl transferase) using the GeneChip WT Terminal labeling kit

growth_protocol: Isolated naïve CD4 T cells were cultured in Th17 polarizing condition for 3 days

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

value: Wild type


title: IJ_4691_B5

description: aortic mRNA expression data

tag: tissue

tag: gender

value: male


title: sham 2


title: sham 1


title: Starving L430Q cell clone 4

status: Public on Aug 09 2017

city: Chicago

first: Yang

last: Liao

state: IL

address: 929 East 57th Street

institute: The University of Chicago

description:
WD8
Replicate 2

hyb_protocol: Standard Illumina hybridization protocol.

scan_protocol: Standard Illumina scanning protocol.

data_processing: The data were normalised using quantile normalisation with IlluminaGUI in R.

source_name: MEF cells, E2F3 L430Q, serum starvation

label_protocol: Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.

growth_protocol: Cells grew in DMEM medium with 10% FBS.

extract_protocol: RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.

treatment_protocol: Serum starvation: cells grew in DMEM medium without FBS for 72 hours.

tag: strain/background

tag: age

value: 13.5 days

tag: cell type

value: mouse embryonic fibroblasts (MEFs)

tag: condition

value: serum starvation

tag: clone


title: Proliferating L430Q cell clone 2

description:
WD2
Replicate 1

source_name: MEF cells, E2F3 L430Q, proliferation

tag: genotype/variation

value: proliferation


title: Proliferating wild type cell clone 1

description:
WD1
Replicate 1

source_name: MEF cells, WT, proliferation

value: WT


title: Th17_KO_1

value: Pten gene knock-out


title: IJ_4689_B4

description: aortic mRNA expression data


title: Sample 2

status: Public on Aug 08 2017

city: Birmingham

first: Damon

last: Huber

address: Edgbaston

department: School of Biosciences

institute: University of Birmingham

description: Biological replicate 2 of 2

hyb_protocol: Agilent two-Color Agilent Low Input Quick Amp Labeling Kit, version 6

scan_protocol: Scanned using Agilent G2505C scanner

data_processing: Agilent Scan Control Software V.8.5 at a resolution of 3μm. The data was extracted using Agilent Feature extraction software V 10.10

organism: Escherichia coli K-12

source_name: azide treated

label_protocol: standard Agilent protocol

growth_protocol: Cells were subcultured from overnight cultures into 20 ml of LB media

extract_protocol: Total RNA using Qiagen RNeasy kit

treatment_protocol: cultures were split into two 10 ml cultures. One half was treated with 2 mM NaN3 for 10 minutes and the other half was left untreated

tag: growth media

value: LB

tag: od

tag: treatment

value: 2 mM NaN3 for 10 minutes

source_name: untreated


title: sham 3

tag: strain background

value: baseline control

value: control

value: S1 kidney tubule


title: IJ_4693_B2

description: aortic mRNA expression data

tag: strain

value: aorta


title: CRC_normal tissues_767

city: Guangzhou

first: Jiaxin

last: Lin

state: Guangdong

address: 651 Dongfeng East Road

institute: Sun Yat-sen University Cancer Center

description: lncRNA expression in human normal intestinal tissues

hyb_protocol: 1 μg of each labeled cRNA was fragmented by adding 5 μl 10 × Blocking Agent and 1 μl of 25 × Fragmentation Buffer, then heated the mixture at 60 °C for 30 min, finally 25 μl 2 × GE Hybridization buffer was added to dilute the labeled cRNA. 50 μl of hybridization solution was dispensed into the gasket slide and assembled to the LncRNA expression microarray slide. The slides were incubated for 17 hours at 65°C in an Agilent Hybridization Oven. The hybridized arrays were washed, fixed and scanned with using the Agilent DNA Microarray Scanner (part number G2505C).

scan_protocol: After having washed the slides, the arrays were scanned by the Agilent Scanner G2505C.

data_processing: Agilent Feature Extraction software (version 11.0.1.1) was used to analyze acquired array images. Quantile normalization and subsequent data processing were performed with using the GeneSpring GX v11.5.1 software package (Agilent Technologies). After quantile normalization of the raw data, LncRNAs and mRNAs that at least 1 out of 12 samples have flags in Present or Marginal (“All Targets Value”) were chosen for further data analysis. Differentially expressed LncRNAs and mRNAs with statistical significance were identified through Volcano Plot filtering. Hierarchical Clustering was performed using the Agilent GeneSpring GX software (version 11.5.1). GO analysis and Pathway analysis were performed in the standard enrichment computation method.

source_name: CRC_normal tissues_767

label_protocol: Each sample was amplified and transcribed into fluorescent cRNA along the entire length of the transcripts without 3’ bias utilizing a random priming method. The labeled cRNAs were purified by RNeasy Mini Kit (Qiagen). The concentration and specific activity of the labeled cRNAs (pmol Cy3/μg cRNA) were measured by NanoDrop ND-1000. Agilent Quick Amp Labeling Kit was used for sample labeling.

extract_protocol: Total RNA were prepared using RNasey Mini Kit(Qiagen p/n 74104)  following the manufacturer's recommendations. Each sample was quantified by the NanoDrop ND-1000 and RNA integrity was assessed by standard denaturing agarose gel electrophoresis. mRNA was purified from total RNA after removal of rRNA (mRNA-ONLY™ Eukaryotic mRNA Isolation Kit, Epicentre).

tag: pathological type

value: adeno

tag: tumor stage

value: normal


title: Nephron_TRAP_IRI_4h_BiologicalReplicate1

city: Los Angeles

first: Jing

last: Liu

state: California

address: 1425 San Pablo St.

department: Department of Regenerative Medicine  & Stem Cell Biology

institute: University of Southern California

description:
six2L10a_4hr_4
TRAP RNA
Gene expression data from six2-derived cells in adult kidney

hyb_protocol: Following fragmentation, 5.5 ug of cRNA were hybridized for 16 hr at 45C on GeneChips Affymetrix MoGene-1_0-st-v1. GeneChips were washed and stained in the Affymetrix GeneChip 450 Fluidics station.

scan_protocol: Scanning of arrays was performed by an Affymetrix 3000 GeneChip Scanner.

data_processing: The data were analyzed with Affymetrix expression console 1.3.1 software using RMA normalization method.

source_name: six2-L10a, bilateral ischemic reperfusion injury

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 200ng TRAP RNA or Total RNA

growth_protocol: Mice handling and husbandry were performed according to guidelines issued by the Institutional Animal Care and Use Committees (IACUC) at Harvard University and at the University of Southern California, and were performed on approval of each institutions IACUC committee review.

extract_protocol: kidneys were minced rapidly on ice then added to ice-cold polysome extraction buffer for homogenization. Monoclonal anti-GFP antibodies were coupled to Dynabeads and added to a post-mitochondrial preparation of kidney extract at a ratio of 200µl of freshly bound beads to 800-1200µl of kidney supernatant. Beads and extract were incubated at 4°C, with agitation, for 30 min. The beads were then washed through a large volume of wash buffer, resuspended in lysis buffer, RNA was isolated and contaminating DNA removed by DNaseI digestion (Qiagen RNeasy mini kit).

treatment_protocol: 6- to 10-week-old male mice were anesthetized with an intraperitoneal injection of a ketamine/xylazine mix. The body temperature was maintained at 37°C throughout the procedure. Kidneys were exposed through flank incisions, and both renal pedicles were clamped for 28 min using non-traumatic microaneurysm clips. Restoration of blood flow was monitored before closing incisions with surgical staples. Sham-operated mice underwent the same procedure except for clamping of the pedicles.

value: mixed (C57BL/6 and 129)

value: 8 weeks

value: kidney

tag: cell population

value: nephron

value: bilateral ischemic reperfusion injury

value: six2-CRE, Rosa26-CAGGS-eGFPL10a


title: CRC_normal tissues_849

source_name: CRC_normal tissues_849

value: female


title: CRC_normal tissues_800

source_name: CRC_normal tissues_800

value: male


title: IJ_9_A5

description: aortic mRNA expression data

tag: genotype

value: MR-knockout

tag: developmental stage

value: aged


title: Starving wild type cell clone 1

description:
WD10
Replicate 1

source_name: MEF cells, WT, serum starvation

value: 13.5 days

value: mouse embryonic fibroblasts (MEFs)

value: WT

value: serum starvation


title: Nephron_TRAP_IRI_4h_BiologicalReplicate3

description:
six2L10a_4hr_9
TRAP RNA
Gene expression data from six2-derived cells in adult kidney

tag: gender

tag: tissue


title: Starving L430Q cell clone 2

description:
WD7
Replicate 1

tag: strain/background

tag: age


title: Proliferating wild type cell clone 16

description:
WD6
Replicate 2

tag: cell type

tag: condition

value: proliferation


title: CRC_normal tissues_788

source_name: CRC_normal tissues_788

value: adeno


title: CRC_tumor tissues_758

description: lncRNA expression in human colorectal cancer tissues

source_name: CRC_tumor tissues_758

value: colorectal cancer


title: B. macrocarpa-inoculated with BNYVV/water_1

first: Junying

state: Beijing

address: yuan ming yuan weat road

department: Plant Pathology

institute: China Agricultural University

description:
small RNA
BN1/Mock1

hyb_protocol: Hybridization was performed overnight on a µParaflo microfluidic chip using a micro-circulation pump (Atactic Technologies, Houston, TX, USA).

scan_protocol: Fluorescence images were collected using a laser scanner (GenePix 4000B, Molecular Device, Union City, CA, USA) Images were quantified using  Array-Pro image analysis software (Media Cybernetics, Silver Spring, MD, USA).

data_processing: Data were analyzed by first subtracting the background and then normalizing the signals using a LOWESS filter (Locally-weighted Regression).

organism: Beta macrocarpa

source_name: small RNA from systemic leaves inoculated with water

label_protocol: These small RNAs were 3′-extended with a poly(A) tail using poly(A) polymerase and then an oligonucleotide tag was ligated to the poly(A) tail for later fluorescent dye staining.

growth_protocol: B. macrocarpa plants were grown in a controlled-environment chamber at 24 ± 1°C with 16 h of illumination per day.

extract_protocol: Total RNA extracted using Trizol following manufacturer's instructions, and then the small RNAs (< 300-nt) were size-fractionated using YM-100 microcon centrifugal filters (Millipore) from 2 µg of total RNA samples.

treatment_protocol: inoculated with water as control

value: 5-leaf stage

tag: sample time

value: 15 dpi

value: systemic leaves

value: wild type

source_name: small RNA from systemic leaves of B. macrocarpa inoculated with BNYVV


title: IJ_192_A3

description: aortic mRNA expression data

value: aorta

value: wildtype


title: Starving wild type cell clone 16

description:
WD12
Replicate 2

tag: genotype/variation

tag: clone


title: CRC_tumor tissues_767

source_name: CRC_tumor tissues_767


title: IJ_4703_B6

description: aortic mRNA expression data

source_name: AORTA

value: young


title: CRC_normal tissues_758

source_name: CRC_normal tissues_758

value: female

value: normal


title: Proliferating L430Q cell clone 4

description:
WD3
Replicate 2


title: CRC_tumor tissues_800

source_name: CRC_tumor tissues_800

value: male


title: H39703_low cytokine; over weight

status: Public on Aug 07 2017

city: Houston

first: JoAnne

last: Richards

state: TX

address: One Baylor Plaza

department: Molecular and Cellular Biology

institute: Baylor College of Medicine

description: gene expression data

hyb_protocol: cRNA were hybridized on Affymetrix Human Genome U133 Plus 2.0 Array  using Hybridization Oven 640. The GeneChip® Fluidics Station 450 automates the delivery, timing and temperature control of reagents for staining and washing of the probe arrays.

scan_protocol: GeneChips were scanned using GeneArray™ Scanner 3000 and quantified with Affymetrix GCOS 1.4.

data_processing: The data were analyzed using affy package from Bioconductor with RMA method.

source_name: Ovarian granulosa cells from over weight, low cytokine group patients

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA

growth_protocol: All cells are collected from pooled follicle fluid aspired from the patient going through IVF cycles.

extract_protocol: Total RNA extraction by RNeasy Mini Kit (Qiagen, Valencia, CA)

treatment_protocol: All patients are going through IVF cycles.

value: ovarian granulosa cells

tag: phenotype

tag: mean bmi kg/m2

value: mixed


title: CRC_tumor tissues_788

source_name: CRC_tumor tissues_788


title: H39699_PCOS: Low cytokine; norm weight

description: gene expression data

source_name: Ovarian granulosa cells from normal weight, low cytokine group, PCOS patients

value: PCOS (Polycystic ovary syndrome)


title: Nephron_TRAP_IRI_4h_BiologicalReplicate2

description:
six2L10a_4hr_6
TRAP RNA
Gene expression data from six2-derived cells in adult kidney

value: mixed (C57BL/6 and 129)

value: 8 weeks

value: kidney

value: nephron

tag: treatment

value: bilateral ischemic reperfusion injury

value: six2-CRE, Rosa26-CAGGS-eGFPL10a


title: H39700_ high cytokine; normal weight

description: gene expression data

source_name: Ovarian granulosa cells from normal weight, high cytokine group patients


title: H39698_PCOS: high cytokine; over weight

description: gene expression data

source_name: Ovarian granulosa cells from over weight, high cytokine group, PCOS patients


title: Liver_SREBP_WT_chipC_rep1

status: Public on Aug 05 2017

city: Research Triangle Park

first: Christopher

last: Corton

state: NC

address: 109 TW Alexander Dr.

institute: US-EPA

description: Mice were fed a high protein/low carbohydrate diet for 2 weeks. This diet was used to elicit high-level expression of the nSREBPs

hyb_protocol: Hybridization and washing of the Affymetrix GeneChip Murine Genome MU74A, -B, and -C version 2 arrays (Affymetrix, Santa Clara, CA) were carried out as described in: Mahadevappa, M. & Warrington, J. A. (1999) Nat. Biotechnol. 17, 1134–1136. Duplicate hybridizations were performed with each RNA sample.

scan_protocol: Scanning, and analysis of the Affymetrix GeneChip Murine Genome MU74A, -B, and -C version 2 arrays (Affymetrix, Santa Clara, CA) were carried out as described in: Mahadevappa, M. & Warrington, J. A. (1999) Nat. Biotechnol. 17, 1134–1136.

data_processing: Gene expression results were analyzed by standard methods using Robust Multichip Average (RMA) normalization.

source_name: Liver, wild type mouse

label_protocol: Equal aliquots of total RNA from each of five mouse livers in each group were pooled (total, 20 μg) and used for biotin labeling as described in the Affymetrix technical bulletin

growth_protocol: Mice were housed in colony cages in rooms maintained on a 12-h light/12-h dark cycle.

extract_protocol: Total RNA was prepared from each liver by using RNA STAT-60 (Tel-Test, Friendswood, TX)

treatment_protocol: Livers were excised for RNA extraction

value: 12-16 weeks

tag: Sex

value: Male

tag: diet

value: high protein/low carbohydrate

value: Liver

tag: exposure time

value: 2 weeks


title: Liver_Human_Transgenic_SREBP2_chipC_rep2

source_name: Liver, transgenic SREBP-2 mouse

tag: genotype


title: CRC_tumor tissues_849

source_name: CRC_tumor tissues_849

value: female

tag: pathological type

value: adeno

tag: tumor stage

value: colorectal cancer


title: Sample 1

description: Biological replicate 1 of 2

source_name: azide treated

tag: strain

tag: growth media

value: LB

tag: od

value: 2 mM NaN3 for 10 minutes

source_name: untreated


title: Liver_Scap-/-_chipC_rep2

description: Mice received four i.p. injections of polyinosinic-polycytidylic acid to induce the Cre recombinase and euthanized 14 days after last injection

source_name: Liver, Scap knockout mouse

value: Scap-/-

tag: age

value: 10-12 weeks

value: Teklad chow

tag: tissue

value: 14 days


title: B. macrocarpa-inoculated with BNYVV/water_2

description:
small RNA
BN2/Mock2

source_name: small RNA from systemic leaves inoculated with water

tag: developmental stage

value: 5-leaf stage

tag: sample time

value: 15 dpi

value: systemic leaves

value: wild type


title: Liver_Scap_WT_chipC_rep2

value: Male


title: CRC_normal tissues_672

source_name: CRC_normal tissues_672

tag: gender

value: male

value: normal


title: CRC_tumor tissues_672

source_name: CRC_tumor tissues_672


title: Liver_Human_Transgenic_SREBP1a_chipB_rep1

source_name: Liver, transgenic SREBP-1a mouse

value: 12-16 weeks

value: high protein/low carbohydrate

value: Liver

value: 2 weeks


title: Liver_SREBP_WT_chipB_rep2


title: B. macrocarpa-inoculated with BNYVV/water_3

description:
small RNA
BN3/Mock3

source_name: small RNA from systemic leaves of B. macrocarpa inoculated with BNYVV


title: Liver_Scap-/-_chipB_rep2


title: Liver_Scap_WT_chipB_rep2


title: Liver_Human_Transgenic_SREBP1a_chipA_rep1


title: Liver_Human_Transgenic_SREBP1a_chipA_rep2


title: Liver_Human_Transgenic_SREBP2_chipA_rep1


title: Liver_SREBP_WT_chipC_rep2


title: Liver_Human_Transgenic_SREBP1a_chipC_rep1


title: Liver_Human_Transgenic_SREBP1a_chipB_rep2


title: Liver_Human_Transgenic_SREBP2_chipC_rep1


title: Liver_Human_Transgenic_SREBP1a_chipC_rep2


title: Liver_Human_Transgenic_SREBP2_chipB_rep1


title: Liver_Scap_WT_chipC_rep1


title: Liver_Human_Transgenic_SREBP2_chipB_rep2


title: H39733_low cytokine; normal weight

description: gene expression data

source_name: Ovarian granulosa cells from normal weight, low cytokine group patients

value: ovarian granulosa cells

tag: phenotype

value: mixed


title: Liver_Scap-/-_chipC_rep1

value: Scap-/-


title: Liver_Scap_WT_chipA_rep1

value: 10-12 weeks


title: H39701_high cytokine; mix/over weight

description: gene expression data

source_name: Ovarian granulosa cells from mixed/over weight, high cytokine group patients

tag: mean bmi kg/m2


title: Liver_Scap_WT_chipB_rep1

value: Teklad chow


title: Liver_Human_Transgenic_SREBP2_chipA_rep2


title: Liver_SREBP_WT_chipA_rep1


title: Liver_SREBP_WT_chipA_rep2


title: Liver_SREBP_WT_chipB_rep1


title: NC stom_3

status: Public on Aug 04 2017

city: Jablonna

first: Monika

last: Słupecka-Ziemilska

address: Instytucka 3

department: Animal Physiology

country: Poland

institute: The Kielanowski Institute of Animal Physiology and Nutrition, Polish Academy of Sciences

description: Sample 11

hyb_protocol: according to the manufacturer's protocol

scan_protocol: Scanned on an Agilent G2505C scanner. Images were quantified using Agilent Feature Extraction Software (version 10.7.3.1).

data_processing: Agilent Feature Extraction Software (v 10.7.3.1) was used for background subtraction and LOWESS normalization.

organism: Rattus norvegicus

growth_protocol: the body weight of animals was recorded daily. The weight of gastrointestinal organs was measured on the end of the expreiment (21st day of life)

extract_protocol: Rneasy Mini Kit (Qiagene, USA)

treatment_protocol: Enteral administration of obestatin in dose 250 nmoles/ kg b.wt or saline solution twice a day for 7 consecutive days strting from the 14th day of life

value: Wistar rat

value: stomach

tag: treatment

value: saline

source_name: sample composed of total RNAs from all animals in the study

value: stomach and middle part of intestine


title: Liver_Scap_WT_chipA_rep2

value: wild type

tag: Sex

value: 14 days


title: Liver_Scap-/-_chipB_rep1

value: Male

tag: diet


title: NC stom_1

description: Sample 9

label_protocol: according to the manufacturer's protocol


title: NOH stom_4

description: Sample 4

value: obestatin (NOH, 250 nmoles/ kg b.wt)


title: NOH stom_1

description: Sample 1


title: NOH stom_2

description: Sample 2


title: e4.5 TE, high fat diet, biological rep 2

city: PHILADELPHIA

first: Tami

last: Stuart

state: PA

address: 421 Curie Blvd, BRB II/III, CRRWH Rm 1341

department: Pediatrics

institute: CHOP

description: Gene expression data from e4.5 trophectoderm from a dam fed a high fat diet

hyb_protocol: Samples were hybridized to the GeneChip Mouse Exon 1.0ST array

scan_protocol: Gene chips were scanned using the Affymetrix GeneChip Scanner 3000 7G System

data_processing: Probe intensity data were normalized and summarized to transcript cluster ID level using RMA as implemented in the Partek Genomics Suite.

source_name: e4.5 trophectoderm from dam exposed to a high fat diet

label_protocol: cDNA was generated and linearly amplified with the Ovation PICO WTA system (Nugen), and a subsequent round of linear amplification was performed using the TransPlex WTA kit.

growth_protocol: Female C57BL/6J mice were fed a control (Lab Diet 5015) or high fat diet (Teklad 06414) from weaning until 16wks of age at which point they were mated to C57BL/6J males.  Mating was confirmed via presence of a vaginal plug (e0.5)

extract_protocol: Total RNA was isolated using the PicoPure RNA Isolation Kit

treatment_protocol: 4 days after mating (e4.5), blastocyts were flushed from the uterine horn and trophectoderm was dissected from the abembryonic pole.  Trophectoderm from 5 blastocysts was pooled to produce a single sample and stored in RNAlater solution

value: trophectoderm

value: C57BL/6J parents

value: embryonic day 4.5

value: high fat


title: LPS-093

city: Shanghai

first: niao

last: Yang

address: 325 Guohe Road

institute: Second Military Medical University,

description: Gene expression data from bone-marrow dendritic cells treated with Nitidine Chloride following LPS stimulation

hyb_protocol: Hybridization was performed in NimbleGen Hybridization System.

scan_protocol: slides were scanned with Axon GenePix 4000B scanner

data_processing: Data was extracted and normalized using NimbleScan v2.5 Software. Results were provided in the NimbleScan Generated Data Folder.

source_name: Bone-marrow dendritic cells

label_protocol: NimbleGen One-Color DNA Labeling Kit was used for sample labeling.

growth_protocol: BMDCs were generated from C57BL/6 female mice. Briefly, bone marrow was flushed from the tibiae and femurs and depleted of red cells with hypotonic lysis of 0.83% w/v ammonium chloride. On day 0, cells were cultured in RPMI1640 supplemented with 10% v/v heat-inactivated FCS, 10 ng/mL GM-CSF and 1 ng/mL IL-4 in six-well culture plates (106 cells/mL; 2 mL/well) at 37°C and 5% CO2. On day 2, floating cells were gently removed, and fresh medium was added. On day 5, non-adherent cells and loosely adherent proliferating DCs aggregates were harvested for further treatment.

extract_protocol: Total RNA was extracted using TRIZOL Reagent (Cat#15596-018，Life technologies, Carlsbad, CA, US)following the manufacturer’s instructions and checked for a RIN number to inspect RNA integrity by an Agilent Bioanalyzer 2100 (Agilent technologies, Santa Clara, CA, US).Qualified total RNA was further purified by RNeasy micro kit (Cat#74004, QIAGEN, GmBH, Germany) and RNase-Free DNase Set  (Cat#79254, QIAGEN, GmBH, Germany).

treatment_protocol: BMDCs were incubated with vehicle or the of NC for 12 h and then stimulated with vehicle or LPS 1 μg/ml for 12 h.

value: female

value: wild-type

tag: pretreatment

value: nitidine chloride 2uM for 12h

tag: stimulation

value: LPS 1ug/ml for 12h


title: NC mid_1

description: Sample 13

value: the middle part of intestine


title: Liver_Scap-/-_chipA_rep2

tag: genotype

value: Scap-/-

value: 10-12 weeks

value: Teklad chow

value: Liver

tag: exposure time


title: e4.5 TE, high fat diet, biological rep 1


title: LPS-Ctrl

description: Gene expression data from bone-marrow dendritic cells treated with vehicle following LPS stimulation

tag: strain

value: vehicle for 12h


title: Liver_Scap-/-_chipA_rep1

value: 14 days


title: 093

description: Gene expression data from bone-marrow dendritic cells treated with Nitidine Chloride


title: NC stom_4

description: Sample 12

value: Wistar rat

value: stomach

value: saline

value: stomach and middle part of intestine


title: NC mid_2

description: Sample 14


title: NOH mid_4

description: Sample 8

value: obestatin (NOH, 250 nmoles/ kg b.wt)


title: NC mid_4

description: Sample 16


title: NC stom_2

description: Sample 10


title: NOH mid_1

description: Sample 5


title: NOH mid_3

description: Sample 7


title: e4.5 TE, control diet, biological rep 4

description: Gene expression data from e4.5 trophectoderm from a dam fed a control diet

source_name: e4.5 trophectoderm from dam exposed to a control diet

value: trophectoderm

value: C57BL/6J parents

value: embryonic day 4.5

value: control


title: NOH stom_3

description: Sample 3


title: e4.5 TE, control diet, biological rep 3


title: e4.5 TE, high fat diet, biological rep 3

value: high fat


title: e4.5 TE, control diet, biological rep 2


title: NOH mid_2

description: Sample 6

value: the middle part of intestine


title: Absence_of_Perineural_Invasion_21_tumor

first: Yongwei

last: Sun

address: 160 Pujian Rd

department: Department of Biliary-Pancreatic Surgery

institute: Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University

description: Gene_expression_of_Absence_of_Perineural_Invasion_21_tumor

hyb_protocol: Scanned on an Agilent G2565CA scanner.

scan_protocol: Feature Extraction v10.7 (Agilent Technologies, CA) software was used to extract all features of the data obtained from the scanned images and genespring software was used to analyze the raw data, which are normalized by percentile normalization.

data_processing: The noromalized value of 75 percentile.

source_name: without PNI,patient 21,tumor tissue

label_protocol: DNA in hybridization solution was denatured at 95℃ for 3 min prior to loading onto a microarray. Arrays were hybridized was preformed in a Agilent Hybridization Oven overnight at a rotation speed of 20 rpm at 42℃ and washed with two consecutive solutions (0.2% SDS, 2× SSC at 42℃ for 5 min, and 0.2× SSC for 5 min at room temperature).

extract_protocol: cDNA labeled with a fluorescent dye (Cy3-dCTP) was produced by Eberwine’s linear RNA amplification method and subsequent enzymatic reaction. This procedure has been previously described, and the procedure has been improved by using CapitalBio cRNA Amplification and Labeling Kit (CapitalBio) for producing higher yields of labeled cDNA.

treatment_protocol: RNA was prepared using the TRIzol reagent following the manufacturer's recommendations.  RNA was quantified using a NanoDrop-1000 spectrophotometer.

value: pancreas

tag: tumor size(≤3=0，＞3=1）

tag: t stage

tag: n stage（”n0=0,n1=1)

tag: vessel invasion(absence=0,present=1)

tag: survival time(day)

tag: survival status(alive=0,dead=1)


description: Gene_expression_of_Absence_of_Perineural_Invasion_21_normal

source_name: without PNI,patient 21,normal tissue

tag: tissue


title: Perineural_Invasion_28_tumor

description: Gene_expression_of_Perineural_Invasion_28_tumor

source_name: with PNI,patient 28,tumor tissue


title: Absence_of_Perineural_Invasion_22_tumor

description: Gene_expression_of_Absence_of_Perineural_Invasion_22_tumor

source_name: without PNI,patient 22,tumor tissue


title: Perineural_Invasion_28_normal

description: Gene_expression_of_Perineural_Invasion_28_normal

source_name: with PNI,patient 28,normal tissue


title: Ctrl

description: Gene expression data from bone-marrow dendritic cells treated with vehicle

tag: gender

value: female

value: wild-type


title: Absence_of_Perineural_Invasion_19_tumor

description: Gene_expression_of_Absence_of_Perineural_Invasion_19_tumor

source_name: without PNI,patient 19,tumor tissue


title: e4.5 TE, high fat diet, biological rep 4

tag: age


title: NC mid_3

description: Sample 15

tag: treatment


title: Perineural_Invasion_26_tumor

description: Gene_expression_of_Perineural_Invasion_26_tumor

source_name: with PNI,patient 26,tumor tissue


title: Absence_of_Perineural_Invasion_20_tumor

description: Gene_expression_of_Absence_of_Perineural_Invasion_20_tumor

source_name: without PNI,patient 20,tumor tissue


title: e4.5 TE, control diet, biological rep 1


description: Gene_expression_of_Absence_of_Perineural_Invasion_18_normal

source_name: without PNI,patient 18,normal tissue


title: Perineural_Invasion_27_tumor

description: Gene_expression_of_Perineural_Invasion_27_tumor

source_name: with PNI,patient 27,tumor tissue


title: Absence_of_Perineural_Invasion_17_tumor

description: Gene_expression_of_Absence_of_Perineural_Invasion_17_tumor

source_name: without PNI,patient 17,tumor tissue


title: Perineural_Invasion_22_tumor

description: Gene_expression_of_Perineural_Invasion_22_tumor

source_name: with PNI,patient 22,tumor tissue


title: Perineural_Invasion_21_tumor

description: Gene_expression_of_Perineural_Invasion_21_tumor

source_name: with PNI,patient 21,tumor tissue


title: Perineural_Invasion_22_normal

description: Gene_expression_of_Perineural_Invasion_22_normal

source_name: with PNI,patient 22,normal tissue


title: Perineural_Invasion_24_tumor

description: Gene_expression_of_Perineural_Invasion_24_tumor

source_name: with PNI,patient 24,tumor tissue


title: Perineural_Invasion_19_tumor

description: Gene_expression_of_Perineural_Invasion_19_tumor

source_name: with PNI,patient 19,tumor tissue


title: Absence_of_Perineural_Invasion_18_tumor

description: Gene_expression_of_Absence_of_Perineural_Invasion_18_tumor

source_name: without PNI,patient 18,tumor tissue


title: Perineural_Invasion_26_normal

description: Gene_expression_of_Perineural_Invasion_26_normal

source_name: with PNI,patient 26,normal tissue


title: Perineural_Invasion_27_normal

description: Gene_expression_of_Perineural_Invasion_27_normal

source_name: with PNI,patient 27,normal tissue


title: Perineural_Invasion_18_tumor

description: Gene_expression_of_Perineural_Invasion_18_tumor

source_name: with PNI,patient 18,tumor tissue


description: Gene_expression_of_Absence_of_Perineural_Invasion_16_normal

source_name: without PNI,patient 16,normal tissue


description: Gene_expression_of_Absence_of_Perineural_Invasion_22_normal

source_name: without PNI,patient 22,normal tissue


title: Perineural_Invasion_24_normal

description: Gene_expression_of_Perineural_Invasion_24_normal

source_name: with PNI,patient 24,normal tissue


title: Perineural_Invasion_23_tumor

description: Gene_expression_of_Perineural_Invasion_23_tumor

source_name: with PNI,patient 23,tumor tissue


description: Gene_expression_of_Absence_of_Perineural_Invasion_20_normal

source_name: without PNI,patient 20,normal tissue


title: Absence_of_Perineural_Invasion_15_tumor

description: Gene_expression_of_Absence_of_Perineural_Invasion_15_tumor

source_name: without PNI,patient 15,tumor tissue


title: Absence_of_Perineural_Invasion_14_tumor

description: Gene_expression_of_Absence_of_Perineural_Invasion_14_tumor

source_name: without PNI,patient 14,tumor tissue


title: Perineural_Invasion_25_normal

description: Gene_expression_of_Perineural_Invasion_25_normal

source_name: with PNI,patient 25,normal tissue


title: Perineural_Invasion_25_tumor

description: Gene_expression_of_Perineural_Invasion_25_tumor

source_name: with PNI,patient 25,tumor tissue


title: Perineural_Invasion_23_normal

description: Gene_expression_of_Perineural_Invasion_23_normal

source_name: with PNI,patient 23,normal tissue


title: Perineural_Invasion_20_normal

description: Gene_expression_of_Perineural_Invasion_20_normal

source_name: with PNI,patient 20,normal tissue


description: Gene_expression_of_Absence_of_Perineural_Invasion_19_normal

source_name: without PNI,patient 19,normal tissue


description: Gene_expression_of_Absence_of_Perineural_Invasion_17_normal

source_name: without PNI,patient 17,normal tissue


title: Perineural_Invasion_21_normal

description: Gene_expression_of_Perineural_Invasion_21_normal

source_name: with PNI,patient 21,normal tissue


title: Perineural_Invasion_19_normal

description: Gene_expression_of_Perineural_Invasion_19_normal

source_name: with PNI,patient 19,normal tissue


title: Perineural_Invasion_20_tumor

description: Gene_expression_of_Perineural_Invasion_20_tumor

source_name: with PNI,patient 20,tumor tissue


title: Absence_of_Perineural_Invasion_11_tumor

description: Gene_expression_of_Absence_of_Perineural_Invasion_11_tumor

source_name: without PNI,patient 11,tumor tissue


title: Perineural_Invasion_15_normal

description: Gene_expression_of_Perineural_Invasion_15_normal

source_name: with PNI,patient 15,normal tissue