title: Ts1Cje-Hippocampus: Eup324-repeated

city: Bethesda

first: Faycal

last: Guedj

state: Maryland

address: 35A Convent DR

department: NHGRI

institute: National Institute of Health

description:
matrix table name: Matrix-Ts1Cje-Hippocampus
Hippocampus gene expression data from 6-7 month old mice

hyb_protocol: Arrays were washed and stained with streptavidin-phycoerythrin using the Affymetrix GeneChip Hybridization, Wash and Stain Kit according to the manufacturer's instructions (Affymetrix, Santa Clara, CA).

scan_protocol: Arrays were scanned on a GeneArray Scanner 3000 7G, using the GeneChip Microarray Suite 5.0 (Affymetrix, Santa Clara, CA).

data_processing: Quality control and normalization were performed using the pipeline at the www.arrayanalysis.org website (Maastricht University, the Netherlands). Normalization was done using the Robust Multichip Average (RMA) algorithm and the MBNI custom CDF (http://brainarray.mbni.med.umich.edu/) version #14 for the mouse gene 1.0 ST array. Normalization output consisted of data for 21225 probe sets each corresponding to unique Entrez Gene IDs.

label_protocol: Samples were labeled with Biotin Allonamide Triphosphate according to the GeneChip Whole Transcriptome Labeling and Hybridization protocol (http://www.affymetrix.com) the Affymetrix GeneChip WT PLUS Reagent Kit (Thermo Fisher Scientific, Waltham, MA).

growth_protocol: Mice were housed in standard cages with food and water ad libitum under a controlled environment (temperature = 20°C; humidity = 60%) and a light/dark cycle of 12h. Ts1Cje (Jax Stock 004838) and Dp16 (Jax Stock 013530) males were crossed to C57Bl/6J (Jax Stock 000664) females, and Ts65Dn/F1 (Jax Stock 005252) females were crossed with B6EiC3Sn.BLiAF1 (Stock 003647) males (Jackson Laboratories, Bar Harbor, ME). For embryonic studies, the presence of a vaginal plug was defined as embryonic day 0.5 (E0.5) and 10-15% weight gain at embryonic day 10 was used to confirm pregnancy. Pregnant females were anesthetized with 2.5% isoflurane in a 3/7 02/N2O mixture and euthanized by decapitation at embryonic day E15.5 (E15.5). Embryos were extracted and decapitated in ice-cold phosphate-buffered-saline (PBS1X). Embryonic brains were rapidly removed and brain hemispheres dissected on a cold platform and snap frozen in liquid nitrogen before storage at -80°C. For adult studies, 6-7 month old animals were euthanaized as described above and brains were removed and dissected on a cold platform. Cerebral cortex, hippocampus and cerebellum were snap frozen in liquid nitrogen before storage at -80°C.

extract_protocol: Total RNA was isolated using the NucleoSpin RNA II kits following the manufacturer’s instructions (Macherey-Nagel, Bethlehem, PA). RNA concentrations were measured as absorbance at 260 nm on the Nanodrop instrument (Thermo Fisher Scientific, Waltham, MA). RNA quality was analyzed with the Bioanalyzer (Agilent Biotechnologies, Santa Clara, CA) using the RNA 6000 Nano kit according to the manufacturer’s instructions. Only samples displaying an A260/A280 ratio of 2.0-2.1 and a RIN (RNA Integrity Number) > 9 were used for hybridization to the arrays.

treatment_protocol: No treatment protocol was used in this study

value: Male

value: Hippocampus

value: 6-7 month old mice


title: RWPE-1 control 3

status: Public on May 23 2017

type: RNA

city: Chicago

first: Larisa

last: Nonn

state: IL

address: 840 S. Wood St, MC847

department: Pathology

country: USA

institute: University of Illinois at Chicago

hyb_protocol: Standard Affymetrix protocol

scan_protocol: Standard Affymetrix protocol

data_processing: Data was processed using Genomics Suite 6.6 statistical package (Partek, Inc). Algorithm: RMA, Background Correction: RMA Background Correction, Normalization: Quantile Normalization, Log Probes using Base: 2, Probeset Summarization: Median Polish

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: RWPE-1 prostate epithelial cell line expressing scrambled RNA

label_protocol: WT PLUS labeling protocol

extract_protocol:
Two 100mm dishes per sample of 70% confluent RWPE-1 growing in KSFM media were lysed in Trizol
RNA was isolated with Qiagen Rneasy kit with on-column Dnase-treatment. 1 microgram of total RNA was used for each sample.

tag: cell line


title: Hepatitis C_HCC_04

city: Hamamatsu

first: Takanori

last: Sakaguchi

address: 1-20-1 Handayama Higashi-ku

department: Second Department of Surgery

country: Japan

institute: Hamamatsu University School of Medicine

hyb_protocol: Following fragmentation, 5.5 ug of cDNA were hybridized on the GeneChip Human Gene 2.0 ST Array using  the GeneChip Hybridization Oven 645. GeneChips were washed and stained in the  GeneChip Fluidics Station 450.

scan_protocol: GeneChips were scanned using the GeneChip Scanner 3000 7G.

data_processing: The data were analyzed with GeneSpring GX version12.6 (Agilent Technologies). RMA16 was used as summarization algorithm.

source_name: HCC arising from hepatitis C (HCV-HCC)

label_protocol: cDNA synthesis, amplification and labeling were performed with Ambion WT Expression Kit(Life Technologies) and WT Terminal Labeling Kit (Affymetrix).

extract_protocol: Total RNA was extracted from the frozen resected sample using an RNeasy Mini Kit (Quiagen, Valencia, CA, USA).

tag: tissue

value: Hepatocellular carcinoma


title: Ts1Cje-Hippocampus: Eup371

organism: Mus musculus

tag: gender

tag: developmental stage


title: RWPE-1 183FC 1

source_name: RWPE-1 prostate epithelial cell line expressing the full miR-183 cluster pri-miR


title: Ts1Cje-Hippocampus: Eup324-Restained


title: Ts1Cje-Hippocampus: Eup347


title: RWPE-1 control 1


title: Hepatitis C_HCC_06


title: NAFLD_HCC_01

source_name: HCC developing from NAFLD (NAFLD-HCC)


title: RWPE-1 183FC 3


title: RWPE-1 control 2


title: RWPE-1 183FC 2


title: NAFLD_HCC_03


title: Ts1Cje-Hippocampus: Eup350


title: Ts1Cje-Hippocampus: Eup365


title: Ts1Cje-Hippocampus: TS348


title: Ts1Cje-Hippocampus: TS366


title: Ts1Cje-Hippocampus: TS349


title: Ts1Cje-Hippocampus: Eup324


title: Ts1Cje-Cortex: TS348-repeated

description:
matrix table name: Matrix-Ts1Cje-Cortex
Cortex gene expression data from 6-7 month old mice

value: Cortex


title: Ts1Cje-Cortex: Eup365


title: Ts1Cje-Cortex: Eup371


title: Ts1Cje-Hippocampus: TS323


title: Ts1Cje-Hippocampus: TS320


title: NAFLD_HCC_02


title: Ts1Cje-Cortex: Eup324


title: Ts1Cje-Cortex: Eup350


title: Ts1Cje-Cortex: TS320


title: Ts1Cje-Cortex: TS323


title: Ts1Cje-Cerebellum: TS366

description:
matrix table name: Matrix-Ts1Cje-Cerebellum
Cerebellum gene expression data from 6-7 month old mice

value: Cerebellum


title: Ts1Cje-Cerebellum: Eup371


title: Ts1Cje-Cortex: Eup347


title: Ts1Cje-Cerebellum: TS323


title: Ts1Cje-Cerebellum: TS320


title: Ts1Cje-Cortex: TS366


title: Ts1Cje-Cortex: TS348


title: Ts65Dn-Hippocampus: Eup6

description:
matrix table name: Matrix-Ts65Dn-Hippocampus
Hippocampus gene expression data from 6-7 month old mice


title: Ts65Dn-Hippocampus: TS21


title: Ts1Cje-Cerebellum: Eup350


title: Ts65Dn-Hippocampus: TS5


title: Ts65Dn-Hippocampus: TS9


title: Ts65Dn-Hippocampus: Eup15


title: Ts1Cje-Cerebellum: TS349


title: Ts65Dn-Hippocampus: Eup8


title: Ts1Cje-Cerebellum: Eup347


title: Ts65Dn-Hippocampus: Eup17


title: Ts65Dn-Hippocampus: Eup16


title: Ts1Cje-Cerebellum: Eup324


title: Ts1Cje-Cerebellum: Eup365


title: Ts65Dn-Hippocampus: TS4


title: Ts1Cje-Cortex: TS349


title: Ts65Dn-Cortex: Eup8

description:
matrix table name: Matrix-Ts65Dn-Cortex
Cortex gene expression data from 6-7 month old mice


title: Ts65Dn-Hippocampus: TS18


title: Ts65Dn-Cortex: Eup6


title: Ts65Dn-Cortex: Eup16


title: Ts65Dn-Cortex: Eup15


title: Ts65Dn-Cortex: TS18


title: Ts1Cje-Cerebellum: TS348


title: Ts65Dn-Cortex: TS9


title: Ts65Dn-Cerebellum: Eup8

description:
matrix table name: Matrix-Ts65Dn-Cerebellum
Cerebellum gene expression data from 6-7 month old mice


title: Ts65Dn-Cortex: Eup17


title: Ts65Dn-Cerebellum: Eup6


title: Ts65Dn-Cortex: TS4


title: Ts65Dn-Cerebellum: TS5


title: Ts65Dn-Cerebellum: TS4


title: Dp16-Hippocampus: TS281

description:
matrix table name: Matrix-Dp16-Hippocampus
Hippocampus gene expression data from 6-7 month old mice


title: Ts65Dn-Cortex: TS5


title: Ts65Dn-Cerebellum: TS18


title: Ts65Dn-Cortex: TS21


title: Ts65Dn-Cerebellum: Eup17


title: Ts65Dn-Cerebellum: Eup15


title: Dp16-Hippocampus: Eup263


title: Ts65Dn-Cerebellum: TS9


title: Dp16-Hippocampus: Eup260


title: Ts65Dn-Cerebellum: Eup16


title: Ts65Dn-Cerebellum: TS21


title: Dp16-Hippocampus: Eup280


title: Dp16-Hippocampus: TS278


title: Dp16-Hippocampus: Eup274


title: Dp16-Hippocampus: TS255


title: Dp16-Hippocampus: TS277


title: Dp16-Hippocampus: Eup279


title: Dp16-Cortex: Eup279

description:
matrix table name: Matrix-Dp16-Cortex
Cortex gene expression data from 6-7 month old mice


title: Dp16-Cortex: Eup280


title: Dp16-Hippocampus: TS254


title: Dp16-Cortex: Eup263


title: Dp16-Cortex: TS278


title: Dp16-Cortex: TS277


title: Dp16-Cortex: TS255


title: Dp16-Cortex: Eup260


title: Dp16-Cortex: TS254


title: Dp16-Cortex: TS281


title: Ts1Cje-E15: TS12

description:
matrix table name: Matrix-Ts1Cje-E15
Forebrain gene expression data from day 15 embryo

value: Forebrain

value: day 15 embryo


title: Ts1Cje-E15: TS06


title: Dp16-Cerebellum: Eup260

description:
matrix table name: Matrix-Dp16-Cerebellum
Cerebellum gene expression data from 6-7 month old mice


title: Ts1Cje-E15: TS04

value: Female


title: Dp16-Cerebellum: TS255


title: Dp16-Cerebellum: TS281


title: Ts1Cje-E15: TS14


title: Dp16-Cerebellum: Eup263


title: Dp16-Cerebellum: Eup279


title: Dp16-Cerebellum: TS277


title: Dp16-Cerebellum: Eup280


title: Ts1Cje-E15: Eup09


title: Ts1Cje-E15: TS01


title: Ts1Cje-E15: Eup07


title: Ts1Cje-E15: Eup05


title: Dp16-Cortex: Eup274


title: Dp16-Cerebellum: Eup274


title: Ts1Cje-E15: Eup11


title: Ts65Dn-E15: TSf08

description:
matrix table name: Matrix-Ts65Dn-E15
Forebrain gene expression data from day 15 embryo


title: Ts65Dn-E15: TSf12


title: Ts1Cje-E15: Eup15


title: Ts65Dn-E15: TSm04


title: Ts65Dn-E15: TSm01


title: Dp16-E15: TSm10

description:
matrix table name: Matrix-Dp16-E15
Forebrain gene expression data from day 15 embryo


title: Ts65Dn-E15: Eupm03


title: Ts65Dn-E15: TSm14


title: Ts65Dn-E15: Eupm05


title: Ts65Dn-E15: TSm09


title: Dp16-E15: TSm04


title: Ts65Dn-E15: Eupf02


title: Dp16-E15: Eupm13


title: Ts65Dn-E15: Eupm15


title: Ts65Dn-E15: Eupf11


title: Dp16-E15: TSm05


title: Ts65Dn-E15: Eupf06


title: Dp16-E15: Eupm07


title: Dp16-E15: Eupf06


title: Dp16-E15: Eupm02


title: Dp16-E15: Eupm03


title: Ts65Dn-E15: Eupf16


title: Dp16-E15: TSf08


title: Dp16-E15: TSf11


title: Dp16-E15: Eupf01


title: Dp16-E15: TSm09


title: splenic CD4+ T cells_tBHQ_rep3

city: Budapest

first: Viola

last: Tamasi

address: Nagyvarad sqr 4

department: Genetic, Cell- and Immunobiology

country: Hungary

institute: Semmelweis University

description: 12 week  old male

hyb_protocol: 1.6 ug of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 55 μl containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers instructions.   On completion of the fragmentation reaction, 55 μl of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to Agilent Whole Human Genome Oligo Microarrays (G4112A) for 17 hours at 65Â°C in a rotating Agilent hybridization oven.

scan_protocol: Slides were scanned immediately after washing the Agilent DNA Microarrays The slides were scanned with a microarray scanner (G2565AA) using one color scan setting for 1x44k array slides (Scan Area 61x21.6 mm, Scan resolution 10um, Dye channel is set to Green and Green PMT is set to 100%).

data_processing: Raw microarray data were processed with Agipreprocess44x4 program package; Normalized with Limma package using the quantile normalization method; Comparation of genes in tBHQ vs untreated group was performed with lmfit és eBayes functions; Significance was determinated with Benjamini-Hochberg correction

source_name: splenic CD4+ T cells tBHQ

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.2 ug RNA with Low Input Quick Amp Labeling Kit, one-color

extract_protocol: RNA was isolated with RNeasy mini kit (Qiagen, USA),  following the manufacturer's recommendations.

treatment_protocol: per os tBHQ was administered mixed in the food of animals (1.5%)

tag: strain

value: BALB/c

value: spleen


title: plasma-mirna-7

city: XIAMEN

first: Hanxiang

last: An

state: Fujian

address: siming district Zhenhai road 55#, 1st affiliated hospital of xiamen university

country: China

institute: xiamen cancer hospital

hyb_protocol: The Hy3TM-labeled samples were hybridized on the miRCURYTM LNA Array (v.21.0) (Exiqon) according to array manual

scan_protocol: The slides were scanned using the Axon GenePix 4000B microarray scanner (Axon Instruments, Foster City, CA).

data_processing: Scanned images were then imported into GenePix Pro 6.0 software (Axon) for grid alignment and data extraction. Replicated miRNAs were averaged and miRNAs that intensities>=50 in all samples were chosen for calculating normalization factor. Expressed data were normalized using the Median normalization. After normalization, differentially expressed miRNAs with statistical significance were identified through Volcano Plot filtering

source_name: patient with primary resistance to TKI

label_protocol: The miRCURY™ Hy3™/Hy5™ Power labeling kit (Exiqon, Vedbaek, Denmark) was used according to the manufacturer’s guideline for miRNA labelling

growth_protocol: For each sample, 5–10mL of blood was taken in EDTA-containing vacuum tubes. Plasma and blood cells were separated by centrifugation at 820 × g for 10 min at 4°C, Plasma was then centrifuged at 2500 × g for 10 min at 4°C. Plasma was stored at -80℃.

extract_protocol: Total RNA was isolated using TRIzol (Invitrogen) and miRNeasy mini kit (QIAGEN) according to manufacturer’s instructions, which efficiently recovered all RNA species, including miRNAs. RNA quality and quantity was measured by using nanodrop spectrophotometer (ND-1000, Nanodrop Technologies) and RNA Integrity was determined by gel electrophoresis

value: plasma

tag: diagnosis

value: NSCLC


title: splenic CD4+ T cells_tBHQ_rep1

description: 12 week  old male


title: Neuroblastoma cells at C2, biological rep1

city: Ningbo

first: Jin

last: Xu

address: 818 Fenghua Road

institute: Ningbo University

description: Neuroblastoma cells _C2-1

hyb_protocol: 5µg fragmented cRNA  was hybridized to the Affymetrix HTA2.0 Human Gene Expression Arrays at 45℃ for 16 hours

scan_protocol: The microarrays were scanned on an Affymetrix GeneChip Scanner 3000 7G.

data_processing: The data were analyzed with Affymetrix® GeneChip® Command Console® (AGCC) Software.The Robust Multiarray Averaging (RMA) method was used to correct, normalize and summarize the probe level information.

source_name: SH-SY5Y treated with 60 nM OA for 12 h

label_protocol: Biotin-labeled cRNAs was synthesized using an GeneChip IVT Labeling kit.

growth_protocol: The SH-SY5Y cells were cultured in DMEM high glucose culture fluid supplemented with 10% FBS at 37°C in a humidified incubator containing 5% CO2.

extract_protocol: Total RNA was extracted with a Qiagen RNeasy Mini Kit according to the manufacturer’s instructions.

treatment_protocol: The SH-SY5Y cells were treated with 0 nM, 20 nM and 60 nM OA for 12 h with 4% FBS in culture fluid. Subsequently, the exposure culture fluid was removed, and cells were rinsed with PBS two times.

tag: cell type

value: Human neuroblastoma line

tag: treated with

value: 20 nM Okadaic acid (OA) for 12h (C2)


title: Neuroblastoma cells at C2, biological rep2

description: Neuroblastoma cells _C2-2


title: Neuroblastoma cells at C1, biological rep2

description: Neuroblastoma cells _C1-2

source_name: SH-SY5Y treated with 20 nM OA for 12 h

value: 20 nM Okadaic acid (OA) for 12h (C1)


title: splenic CD4+ T cells_tBHQ_rep2

description: 12 week  old male


title: Neuroblastoma cells at C2, biological rep3

description: Neuroblastoma cells _C2-3


title: plasma-mirna-8

source_name: patient with secondary resistance to TKI


title: Neuroblastoma cells at C0, biological rep1

description: Neuroblastoma cells _C0-1

source_name: SH-SY5Y without OA

value: none (untreated; C0)


title: ChAT-P4

city: Tianjin

first: Junwei

last: Hao

address: 154 Anshan Road, Heping District

institute: Tianjin Medical University General Hospital

hyb_protocol: Labeled controls and test samples labeled with Cy3-dCTP were dissolved in 80 uL hybridization solution containing 3×SSC, 0.2% SDS, 5×Denhardt’s solution and 25% formamide. DNA in hybridization solution was denatured at 95℃ for 3 min prior to loading onto a microarray. Arrays were hybridized was preformed in a Agilent Hybridization Oven overnight at a rotation speed of 20 rpm at 42℃ and washed with two consecutive solutions (0.2% SDS, 2× SSC at 42℃ for 5 min, and 0.2× SSC for 5 min at room temperature).

scan_protocol: Agilent G2565CA Microarray Scanner was used for scanning to obtain images

data_processing: Feature Extraction software was used for image analysis, and transform the signal into digital information. To select the differentially expressed genes, we used thresholdvalues of ≥2 and ≤−2-fold change and p value of 0.05. The data was Log2 transformed and median centered by genes using the Adjust Data function of CLUSTER 3.0 software then further analyzed with hierarchical clustering with average linkage.

source_name: ChAT-P

label_protocol: Double-stranded cDNAs (containing the T7 RNA polymerase promoter sequence) were synthesized from 100 ng total RNA using the CbcScript reverse transcriptase with cDNA synthesis system Dccording to the manufacturer’s protocol (Capitalbio) with the T7 Oligo (dT).   After completion of double-stranded cDNA (dsDNA) synthesis using DNA polymerase and RNase H, the dsDNA products were purified using a PCR NucleoSpin Extract II Kit (MN) and eluted with 30 uL elution buffer. The eluted double-stranded cDNA products were vacuum evaporated to 16 uL and subjected to 40 uL in vitro transcription reactions at 37℃ for 14 hr using a T7 Enzyme Mix. The amplified cRNA was purified using the RNA Clean-up Kit (MN).   Klenow enzyme labeling strategy was adopted after reverse transcription using CbcScript Ⅱ reverse transcriptase. Briefly, 2 ug amplified RNA was mixed with 4 ug random nanomer, denatured at 65℃ for 5min, and cooled on ice. Then, 5 uL of 4×first-strand buffer, 2 uL of 0.1M DTT, and 1.5 uL CbcScript Ⅱ reverse transcriptase were added. The mixtures were incubated at 25℃ for 10 min, then at 37℃ for 90 min. The cDNA products were purified using a PCR NucleoSpin Extract II Kit (MN) and vacuum evaporated to 14 uL. The cDNA was mixed with 4 ug random nanomer, heated to 95℃ for 3 min, and snap cooled on ice for 5 min. Then, 5 uL Klenow buffer, dNTP, and Cy5-dCTP or Cy3-dCTP (GE Healthcare) were added to final concentrations of 240 uM dATP, 240 uM dGTP, 240 uM dTTP, 120 uM dCTP, and 40 uM Cy-dCTP. 1.2 uL Klenow enzyme was then added, and the reaction was performed at 37℃ for 90 min. Labeled cDNA was purified with a PCR NucleoSpin Extract II Kit (MN) and resuspended in elution buffer.

extract_protocol: Total RNA containing small RNA was extracted from ChAT+ or ChAT- NK cells by using the Trizol reagent (Invitrogen) and purified with mirVana miRNA Isolation Kit (Ambion, Austin, TX, USA) according to manufacter’s protocol. The purity and concentration of RNA were determined from OD260/280 readings using spectrophotometer (NanoDrop ND-1000). RNA integrity was determined by 1% formaldehyde denaturing gel electrophoresis.

value: NK cells

tag: cell marker

value: ChAT+


title: splenic CD4+ T cells_Control_rep3

description: 12 week  old male

source_name: splenic CD4+ T cells_Control


title: splenic CD4+ T cells_Control_rep1

description: 12 week  old male


title: splenic CD4+ T cells_tbHQ_rep4

description: 12 week  old male

source_name: splenic CD4+ T cells tbHQ


title: splenic CD4+ T cells_Control_rep4

description: 12 week  old male


title: ChAT-N4

source_name: ChAT-N

value: ChAT-


title: ChAT-N1


title: Neuroblastoma cells at C1, biological rep3

description: Neuroblastoma cells _C1-3


title: Neuroblastoma cells at C0, biological rep3

description: Neuroblastoma cells _C0-3


title: ChAT-P2


title: Neuroblastoma cells at C0, biological rep2

description: Neuroblastoma cells _C0-2


title: ChAT-P1


title: ChAT-N2


title: ChAT-P3


title: splenic CD4+ T cells_Control_rep2

description: 12 week  old male


title: Neuroblastoma cells at C1, biological rep1

description: Neuroblastoma cells _C1-1


title: ChAT-N3


title: plasma-mirna-6


title: plasma-mirna-3


title: plasma-mirna-2


title: Ethanol-exposed array 3

status: Public on May 26 2017

city: Toronto

first: Eric

middle: J

last: Chater-Diehl

state: ON

address: 686 Bay St.

country: Canada

institute: SickKids Research Institute

description: Gene expression data from three pooled mice each exposed to ethanol

hyb_protocol: One microgram of total RNA was labeled using the Flash Tag Biotin HSR kit from Genisphere (http://www.genisphere.com/array_detection_flashtag_biotin.html). Samples were then hybridized to Affymetrix 2.0 arrays for 16 hours at 48°C.Fluidics Station 400.

scan_protocol: All washing steps were performed by a GeneChip Fluidics Station 450 and GeneChips were scanned with the GeneChip Scanner 3000 7G (Affymetrix, Santa Clara, CA) using Command Console v1.1.

data_processing: Probe level (.CEL file) data was generated using Affymetrix Command Console v1.1. Individual probes were matched to their chromosomal locations and gene feature by merging information from the Affymetrix mm10 library file with information from the mouse genome informatics (MGI)28 using R

source_name: Mouse hippocampal RNA after neonatal ethanol exposure

label_protocol: All sample labeling and GeneChip processing was performed at the London Regional Genomics Centre (Robarts Research Institute, London, Ontario, Canada; http://www.lrgc.ca). RNA quality was assessed using the Agilent 2100 Bioanalyzer (Agilent Technologies Inc., Palo Alto, CA) and the RNA 6000 Nano kit (Caliper Life Sciences, Mountain View, CA). Single stranded complimentary DNA (sscDNA) was prepared from 200 ng of total RNA as per the Ambion WT Expression Kit for Affymetrix GeneChip Whole Transcript WT Expression Arrays (http://www.ambion.com/techlib/prot/fm_4411973.pdf, Applied Biosystems, Carlsbad, CA) and the Affymetrix GeneChip WT Terminal Labeling kit and Hybridization User Manual (http://media.affymetrix.com/support/downloads/manuals/wt_term_label_ambion_user_manual.pdf, Affymetrix, Santa Clara, CA). Total RNA was first converted to cDNA, followed by in vitro transcription to make cRNA. 5.5 ug of single stranded cDNA was synthesized, end labeled

growth_protocol: Mice reared in standard shoebox cages with standard bedding and ad libitum access to food and water

extract_protocol: Qiagen Allprep DNA RNA kit was used according to Qiagen protocol

treatment_protocol: All protocols were approved by the Animal Use Subcommittee (AUS) at the University of Western Ontario, London, Ontario, Canada. C57BL/6J (B6) mice were obtained from Jackson Laboratories (Bar Harbor, MA) and a population was subsequently maintained at the Animal Care Facility at the University of Western Ontario. Female mice 12-18 weeks of age were separated into individual cages and mated with males of approximately the same age. The day of birth was termed post-natal day (PD) zero. Sex and weight-matched littermate pups were divided into two groups: ethanol-treated and saline control mice. Pups were given two subcutaneous dorsal injections at 9 am and 11 am on both PD4 and PD7. Ethanol-treated mice were injected with 2.5 g/kg of ethanol in 0.15 M NaCl. Pups were weaned on PD21 and housed in cages of two to four same-sex littermates. Male mice were used for all subsequent analyses (n=18). Mice were sacrificed on PD 70 via carbon dioxide asphyxiation. The hippocampus was dissected out, snap-frozen in liquid nitrogen, and stored at -80°C

value: whole hippocampus

tag: genotype

tag: age

value: 21 day old


title: plasma-mirna-5


title: plasma-mirna-4


title: plasma-mirna-1


title: HCT-116_M1

city: GUANGZHOU

first: LIANG

middle: JIAN

last: KAI

state: GUANGDONG

address: NO.74 ZHONGSHAN NO.2 ROAD YUEXIU DISTRICT

department: PHARMACOLOGY

institute: SUN YAT-SEN UNIVERSITY

hyb_protocol: Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome U133 Plus 2.0 with constant rotation at the speed of 60 rpm. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the GeneChip® Scanner 3000.

data_processing: The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and RMA as normalization method.

label: Biotin

source_name: Infected HCT-116 cells

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 100ng total RNA (Cat. AM1792, Ambion).

growth_protocol: DMEM added with 10%FBS

extract_protocol: Total RNA of parietal cortex of the patient was extracted with RNeasy Mini Kit (Qiagen), according to the manufacturer’s instruction.

treatment_protocol: Mock infected or infected with M1 virus

value: colorectal cell line

tag: infected with

value: M1 virus


title: SM_Normal

city: Osaka

first: Norikatsu

last: Miyoshi

state: Osaka

address: 3-1-69, Otemae, Chuo-ku

department: Surgery

institute: Osaka International Cancer Institute

hyb_protocol: 0.6ug of Cy3-labelled cRNA was fragmented at 60°C for 30 minutes in a reaction volume of 25 ul containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturer’s instructions. On completion of the fragmentation reaction, 25 ul of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to SurePrint G3 Human GE 8x60K Microarray Ver2.0 (Agilent) for 17 hours at 65°C in a rotating Agilent hybridization oven. After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent).

scan_protocol: Slides were scanned immediately after washing on the Agilent SureScan Microarray Scanner (G2600D) using one color scan setting for 8x60k array slides (Scan Area 61x21.6 mm, Scan resolution 3um, Dye channel is set to Green PMT is set to 100%).

data_processing:
The scanned images were analyzed with Feature Extraction Software 11.5.1.1(Agilent) using default parameters to obtain background subtracted and spatially detrended Processed Signal intensities.
The final processed data for the set of hybridizations in the experiment.

source_name: normal colon

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.1ug Total RNA using the Low Input Quick Amp Labeling Kit(Agilent) according to the manufacturer's instructions, followed by RNeasy column purification (QIAGEN, Valencia, CA). Dye incorporation and cRNA yield were checked with the NanoDrop ND-2000 Spectrophotometer.

extract_protocol: RNA was prepared using the TRIZOL reagen, followed by purification using an RNeasy column (QIAGEN, Valencia, CA). RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).

value: colon


title: Mtb_in_macrophage_WT2_Comp_rep3

status: Public on May 22 2017

city: Ithaca

first: Evgeniya

last: Nazarova

state: NEW YORK

address: C5 103 VMC Cornell University

department: Microbiology & Immunology

institute: Cornell University

description: Biological replicate 3 of 3 for Comp. Biological replicate 2 of 3 for control (WT)

hyb_protocol: An equal amount (400 ng) of labeled aRNA from each of paired samples was mixed and used for hybridization. Microarray hybridization and wash were performed by Cornell Core Facility using the protocols described in the Agilent Two-Color Microarray-Based Gene Expression Analysis manual.

scan_protocol: Slides were scanned by an Agilent DNA Microarray Scanner (G2505B) and array data were extracted from raw image files using Feature Extraction software (Version 10.7, Agilent).

data_processing: Data were then imported into Genespring 7.3 (Agilent) using the default Enhanced Agilent FE settings for subsequent normalization (LOWESS), statistical analysis and visualization.

label: Alexa 647

organism: Mycobacterium tuberculosis

source_name: Comp

label_protocol: The MessageAmpII-Bacteria kit (Ambion) was used to generate amplified RNA (aRNA) from 120 ng of total RNA input. Amino-allyl UTP was incorporated into aRNA during in vitro transcription to allow fluorophore labeling. 10 µg of modified aRNA from each sample was then labeled with Alexa Fluors (Invitrogen). aRNA from ΔlucA::hyg and complemented strain samples were labeled with Alexa 647 and aRNA from wild type samples was labeled with Alexa 555. After excess dyes were quenched by hydroxylamine, the labeled aRNA was purified using a MegaClear Kit (Ambion).

growth_protocol: 3 strains of M. tuberculosis Erdman (WT,  ΔlucA::hyg, complemented strain) were grown in Middlebrook 7H9 broth supplemented with OADC, glycerol and 0.05% Tyloxapol in standing, vented tissue culture flasks till mid-log phase before macrophage infection. Macrophages were differentiated from murine BALB/c bone marrow in 10 days. Then macrophages were seeded into two T75 vented tissue culture flasks (per strain, per replicate) at a density of ~ 2 x 10^7 per flask and used for infection with M. tuberculosis at MOI 4:1. Bacterial RNA was collected on way 3 of infection.

extract_protocol: Total Mtb RNA was extracted using the protocol described in Liu, Y., et al. (2016) JEM 213, 809-825. Transcription in the samples was stopped by addition of guanidine thiocyanate (GTC) buffer to infected macrophages. After a wash with 0.1% Tween-80 in PBS, Mtb was treated with lysozyme, followed by lysis in 65°C Trizol (Invitrogen). Then bacterial cells were ruptured by beed beating. Bacterial lysate was extracted once with chloroform and total RNA was purified from the aqueous phase using a Qiagen RNeasy kit. Eluted RNA samples were treated with DNase I (Ambion) for 1h at 37°C before stored at -70°C.

value: Mycobacterium tuberculosis Erdman

value: complemented strain

label: Alexa 555

source_name: WT

value: wild type


title: Mtb_in_macrophage_WT3_Comp_rep2

description: Biological replicate 2 of 3 for Comp. Biological replicate 3 of 3 for control (WT)


title: Mtb_in_macrophage_WT3_Comp_rep3

description: Biological replicate 3 of 3 for Comp. Biological replicate 3 of 3 for control (WT)


title: Mtb_in_macrophage_WT2_Comp_rep2

description: Biological replicate 2 of 3 for Comp. Biological replicate 2 of 3 for control (WT)


title: OharaC_Normal


title: RKO

source_name: cell line

value: cell line


title: HCT-116_Con

source_name: HCT-116 cells

value: mock (control)


title: iCC1225AK

source_name: iCC

value: isolated tumour-derived Cancer Cells


title: iCC0622


title: Pt_0614

source_name: patient tumor

value: tumor


title: iCC0129MF


title: iCC0614


title: iCC160602


title: iCC0603


title: iCC0524


title: HCT116


title: OharaC_Tumor


title: DLD1


title: Pt_0622


title: Mtb_in_macrophage_WT3_ΔlucA::hyg_rep3

description: Biological replicate 3 of 3 for ΔlucA::hyg. Biological replicate 3 of 3 for control (WT)


title: 0614_Normal


title: Mtb_in_macrophage_WT1_Comp_rep3

description: Biological replicate 3 of 3 for Comp. Biological replicate 1 of 3 for control (WT)


title: Mtb_in_macrophage_WT1_Comp_rep2

description: Biological replicate 2 of 3 for Comp. Biological replicate 1 of 3 for control (WT)


title: Pt_0524


title: Mtb_in_macrophage_WT2_ΔlucA::hyg_rep3

description: Biological replicate 3 of 3 for ΔlucA::hyg. Biological replicate 2 of 3 for control (WT)


title: Mtb_in_macrophage_WT2_ΔlucA::hyg_rep2

description: Biological replicate 2 of 3 for ΔlucA::hyg. Biological replicate 2 of 3 for control (WT)


title: Mtb_in_macrophage_WT1_ΔlucA::hyg_rep2

description: Biological replicate 2 of 3 for ΔlucA::hyg. Biological replicate 1 of 3 for control (WT)


title: Mtb_in_macrophage_WT3_ΔlucA::hyg_rep2

description: Biological replicate 2 of 3 for ΔlucA::hyg. Biological replicate 3 of 3 for control (WT)


title: Mtb_in_macrophage_WT1_ΔlucA::hyg_rep1

description: Biological replicate 1 of 3 for ΔlucA::hyg. Biological replicate 1 of 3 for control (WT)


title: Mtb_in_macrophage_WT3_ΔlucA::hyg_rep1

description: Biological replicate 1 of 3 for ΔlucA::hyg. Biological replicate 3 of 3 for control (WT)


title: Mtb_in_macrophage_WT2_ΔlucA::hyg_rep1

description: Biological replicate 1 of 3 for ΔlucA::hyg. Biological replicate 2 of 3 for control (WT)


title: Neuro_Krainc-2_P02_D09_L2872_01

status: Public on May 20 2017

city: Tel Aviv

first: David

last: Amar

address: Haim Levanon

department: Computer Science

country: Israel

institute: Tel Aviv University

description:
Neuro_Krainc-2_P02_D09_L2872_01.CEL
Whole blood gene expression from ATYPICAL_PD patient.

hyb_protocol: Samples were processed according to manufacturer’s protocols.

data_processing: Data were preprocessed using RMA. Then the data were log2 transformed and quantile normalized. RMA was selected as it produced better patient correlations than MAS5 and GC-RMA.

source_name: Whole blood

extract_protocol: We collected samples of venous blood using a standardized blood withdrawal protocol. PaxGene (Qiagen) and EDTA tubes were obtained. As participants were recruited at different time points, samples were frozen at -80° C first and RNA was extracted after patient recruitment at all centers was completed.

value: whole blood

tag: disease label

tag: batch

tag: learning set

value: TEST

tag: Sex

value: Male

tag: genetic (mutated pd genes)

tag: age at 1st symptoms

tag: updrs i

tag: updrs ii

tag: updrs iii score on

tag: updrs iii score off

tag: updrs iv

tag: hoehn & yahr (on)

tag: hoehn & yahr (off)

tag: moca score


title: Neuro_Krainc-2_P02_C10_L3700_01

description:
Neuro_Krainc-2_P02_C10_L3700_01.CEL
Whole blood gene expression from CONTROL patient.

scan_protocol: Samples were processed according to manufacturer’s protocols.

tag: tissue

value: CONTROL

value: NMF


title: Neuro_Krainc-2_P02_D05_L4105_01

description:
Neuro_Krainc-2_P02_D05_L4105_01.CEL
Whole blood gene expression from DRD-DYT5 patient.

label_protocol: Samples were processed according to manufacturer’s protocols.


title: Mtb_in_macrophage_WT1_ΔlucA::hyg_rep3

description: Biological replicate 3 of 3 for ΔlucA::hyg. Biological replicate 1 of 3 for control (WT)

tag: strain

tag: genotype


title: Neuro_Krainc_P05_C08_FRATRO303

description:
Neuro_Krainc_P05_C08_FRATRO303.CEL
Whole blood gene expression from IPD patient.

tag: disease label

value: IPD

tag: age at exam


title: Neuro_Krainc-2_P02_B09_L3686_01

description:
Neuro_Krainc-2_P02_B09_L3686_01.CEL
Whole blood gene expression from CONTROL patient.

tag: batch

tag: learning set


title: Neuro_Krainc-2_P02_F04_L4027_01

description:
Neuro_Krainc-2_P02_F04_L4027_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_A07_L3663_01

description:
Neuro_Krainc-2_P02_A07_L3663_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P03_B10_FRA_TRO_357_01

description:
Neuro_Krainc-2_P03_B10_FRA_TRO_357_01.CEL
Whole blood gene expression from PSP patient.

value: PSP

tag: Sex


title: Neuro_Krainc-2_P03_B11_FRA_TRO_358_01

description:
Neuro_Krainc-2_P03_B11_FRA_TRO_358_01.CEL
Whole blood gene expression from PSP patient.

tag: age at 1st symptoms


title: Neuro_Krainc-2_P02_C05_L4106_01

description:
Neuro_Krainc-2_P02_C05_L4106_01.CEL
Whole blood gene expression from DRD-DYT5 patient.

tag: updrs i


title: Neuro_Krainc-2_P02_F03_L4104_01

description:
Neuro_Krainc-2_P02_F03_L4104_01.CEL
Whole blood gene expression from DRD-DYT5 patient.

tag: updrs ii


title: Neuro_Krainc-2_P02_D02_L3872_01

description:
Neuro_Krainc-2_P02_D02_L3872_01.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.

tag: genetic (mutated pd genes)

tag: updrs iii score on


title: Neuro_Krainc-2_P02_A12_L4021_01

description:
Neuro_Krainc-2_P02_A12_L4021_01.CEL
Whole blood gene expression from MSA patient.

value: MSA

tag: updrs iii score off

tag: updrs iv


title: Neuro_Krainc-2_P02_B11_L3669_01

description:
Neuro_Krainc-2_P02_B11_L3669_01.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.

tag: hoehn & yahr (on)

tag: hoehn & yahr (off)


title: Neuro_Krainc-2_P02_C08_L3654_01

description:
Neuro_Krainc-2_P02_C08_L3654_01.CEL
Whole blood gene expression from CONTROL patient.

tag: tissue

tag: moca score


title: Neuro_Krainc-2_P03_C01_FRA_TRO_360_01

description:
Neuro_Krainc-2_P03_C01_FRA_TRO_360_01.CEL
Whole blood gene expression from MSA patient.


title: Neuro_Krainc-2_P02_F02_L3668_01

description:
Neuro_Krainc-2_P02_F02_L3668_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_C06_L4025_01

description:
Neuro_Krainc-2_P02_C06_L4025_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_B06_L1342_01

description:
Neuro_Krainc-2_P02_B06_L1342_01.CEL
Whole blood gene expression from CONTROL patient.


title: Mtb_in_macrophage_WT2_Comp_rep1

description: Biological replicate 1 of 3 for Comp. Biological replicate 2 of 3 for control (WT)

tag: strain

tag: genotype


title: Neuro_Krainc_P05_B10_FRATRO293

description:
Neuro_Krainc_P05_B10_FRATRO293.CEL
Whole blood gene expression from CONTROL patient.

tag: disease label

value: Female

tag: age at exam


title: Neuro_Krainc_P05_C03_FRATRO298

description:
Neuro_Krainc_P05_C03_FRATRO298.CEL
Whole blood gene expression from IPD patient.

tag: batch

tag: learning set


title: Neuro_Krainc_P05_B09_FRATRO292

description:
Neuro_Krainc_P05_B09_FRATRO292.CEL
Whole blood gene expression from GPD patient.

value: GPD

tag: Sex

value: PARKIN

tag: age at 1st symptoms


title: Neuro_Krainc_P05_B03_FRATRO285

description:
Neuro_Krainc_P05_B03_FRATRO285.CEL
Whole blood gene expression from IPD patient.

tag: updrs i

tag: updrs ii

value: ND


title: Neuro_Krainc_P05_B01_FRATRO283

description:
Neuro_Krainc_P05_B01_FRATRO283.CEL
Whole blood gene expression from GPD patient.

tag: genetic (mutated pd genes)

tag: updrs iii score on


title: Neuro_Krainc_P05_A09_FRATRO278

description:
Neuro_Krainc_P05_A09_FRATRO278.CEL
Whole blood gene expression from IPD patient.

tag: updrs iv


title: Neuro_Krainc_P05_A06_FRATRO274

description:
Neuro_Krainc_P05_A06_FRATRO274.CEL
Whole blood gene expression from IPD patient.

tag: hoehn & yahr (on)


title: Neuro_Krainc_P04_H10_FRATRO265

description:
Neuro_Krainc_P04_H10_FRATRO265.CEL
Whole blood gene expression from HD patient.

value: HD

tag: updrs iii score off

tag: hoehn & yahr (off)


title: Neuro_Krainc_P05_A03_FRATRO271

description:
Neuro_Krainc_P05_A03_FRATRO271.CEL
Whole blood gene expression from CONTROL patient.

tag: tissue

tag: moca score


title: Neuro_Krainc_P04_E04_FRATRO220

description:
Neuro_Krainc_P04_E04_FRATRO220.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P04_G10_FRATRO251

description:
Neuro_Krainc_P04_G10_FRATRO251.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_B12_FRATRO192

description:
Neuro_Krainc_P04_B12_FRATRO192.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_F09_FRATRO136

description:
Neuro_Krainc_P03_F09_FRATRO136.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P03_F01_FRATRO127

description:
Neuro_Krainc_P03_F01_FRATRO127.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_A06_FRATRO62

description:
Neuro_Krainc_P03_A06_FRATRO62.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P03_B06_FRATRO079

description:
Neuro_Krainc_P03_B06_FRATRO079.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_F02_FRATRO129

description:
Neuro_Krainc_P03_F02_FRATRO129.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_E08_FRATRO122

description:
Neuro_Krainc_P03_E08_FRATRO122.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_E07_FRATRO121

description:
Neuro_Krainc_P03_E07_FRATRO121.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_F04_FRATRO131

description:
Neuro_Krainc_P03_F04_FRATRO131.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_F05_FRATRO234_2

description:
Neuro_Krainc_P04_F05_FRATRO234_2.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P03_E09_FRATRO123

description:
Neuro_Krainc_P03_E09_FRATRO123.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_G09_FRATRO41

description:
Neuro_Krainc_P02_G09_FRATRO41.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_B06_FRATRO186

description:
Neuro_Krainc_P04_B06_FRATRO186.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_F06_FRATRO133

description:
Neuro_Krainc_P03_F06_FRATRO133.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_G02_FRATRO34

description:
Neuro_Krainc_P02_G02_FRATRO34.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_H11_FRATRO55

description:
Neuro_Krainc_P02_H11_FRATRO55.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_E10_FRATRO124

description:
Neuro_Krainc_P03_E10_FRATRO124.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_B04_FRATRO077

description:
Neuro_Krainc_P03_B04_FRATRO077.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_G04_FRATRO36

description:
Neuro_Krainc_P02_G04_FRATRO36.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F12_FRATRO32

description:
Neuro_Krainc_P02_F12_FRATRO32.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_C03_FRATRO093

description:
Neuro_Krainc_P03_C03_FRATRO093.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_G05_FRATRO37

description:
Neuro_Krainc_P02_G05_FRATRO37.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_G03_FRATRO35

description:
Neuro_Krainc_P02_G03_FRATRO35.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F10_FRATRO30

description:
Neuro_Krainc_P02_F10_FRATRO30.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F06_FRATRO24

description:
Neuro_Krainc_P02_F06_FRATRO24.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F08_FRATRO28

description:
Neuro_Krainc_P02_F08_FRATRO28.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F07_FRATRO26

description:
Neuro_Krainc_P02_F07_FRATRO26.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F09_FRATRO29

description:
Neuro_Krainc_P02_F09_FRATRO29.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_E11_FRATRO16

description:
Neuro_Krainc_P02_E11_FRATRO16.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_E02_FRATRO6_2

description:
Neuro_Krainc_P02_E02_FRATRO6_2.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_D08_B45

description:
Neuro_Krainc_P02_D08_B45.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P02_C09_L3716_2

description:
Neuro_Krainc_P02_C09_L3716_2.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_C07_L3714

description:
Neuro_Krainc_P02_C07_L3714.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_C04_L3652

description:
Neuro_Krainc_P02_C04_L3652.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_E03_FRATRO7

description:
Neuro_Krainc_P02_E03_FRATRO7.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P02_D09_B980

description:
Neuro_Krainc_P02_D09_B980.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_E01_FRATRO5

description:
Neuro_Krainc_P02_E01_FRATRO5.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_C12_L3731

description:
Neuro_Krainc_P02_C12_L3731.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F03_FRATRO21

description:
Neuro_Krainc_P02_F03_FRATRO21.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_C10_L3717

description:
Neuro_Krainc_P02_C10_L3717.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_B07_L3522

description:
Neuro_Krainc_P02_B07_L3522.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_C06_L3713

description:
Neuro_Krainc_P02_C06_L3713.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_C05_L3712

description:
Neuro_Krainc_P02_C05_L3712.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_B01_L3516

description:
Neuro_Krainc_P02_B01_L3516.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_C03_L3651

description:
Neuro_Krainc_P02_C03_L3651.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_A04_L3506

description:
Neuro_Krainc_P02_A04_L3506.CEL
Whole blood gene expression from PD_DEMENTIA patient.


title: Neuro_Krainc_P02_B06_L3521_2

description:
Neuro_Krainc_P02_B06_L3521_2.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_A12_L3515

description:
Neuro_Krainc_P02_A12_L3515.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_B04_L3519

description:
Neuro_Krainc_P02_B04_L3519.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_G11_L3463

description:
Neuro_Krainc_P01_G11_L3463.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_A11_L3514

description:
Neuro_Krainc_P02_A11_L3514.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_G1_L3453

description:
Neuro_Krainc_P01_G1_L3453.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_B12_L3603

description:
Neuro_Krainc_P02_B12_L3603.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_H8_L3493

description:
Neuro_Krainc_P01_H8_L3493.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_A08_L3510

description:
Neuro_Krainc_P02_A08_L3510.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_D4_L3348

description:
Neuro_Krainc_P01_D4_L3348.CEL
Whole blood gene expression from GPD patient.

value: SNCA


title: Neuro_Krainc_P01_E4_L3365

description:
Neuro_Krainc_P01_E4_L3365.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: E8R_012a28_2

description:
E8R_012a28_2_(HG-U133_Plus_2).CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_C8_L3338

description:
Neuro_Krainc_P01_C8_L3338.CEL
Whole blood gene expression from CONTROL patient.


title: E8R_012a15

description:
E8R_012a15_(HG-U133_Plus_2).CEL
Whole blood gene expression from IPD patient.


title: E7R_039a47

description:
E7R_039a47_(HG-U133_Plus_2).CEL
Whole blood gene expression from GPD patient.


title: E7R_037d06

description:
E7R_037d06_(HG-U133_Plus_2).CEL
Whole blood gene expression from HD_HD_BATCH patient.


title: E8R_012a10

description:
E8R_012a10_(HG-U133_Plus_2).CEL
Whole blood gene expression from PD_DEMENTIA patient.


title: E7R_039a43

description:
E7R_039a43_(HG-U133_Plus_2).CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: E7R_039a53

description:
E7R_039a53_(HG-U133_Plus_2).CEL
Whole blood gene expression from ATYPICAL_PD patient.


title: E7R_037d12

description:
E7R_037d12_(HG-U133_Plus_2).CEL
Whole blood gene expression from HD_HD_BATCH patient.


title: Neuro_Krainc_P01_B9_L3292

description:
Neuro_Krainc_P01_B9_L3292.CEL
Whole blood gene expression from GPD patient.


title: E7R_039a86

description:
E7R_039a86_(HG-U133_Plus_2).CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: E7R_039a61

description:
E7R_039a61_(HG-U133_Plus_2).CEL
Whole blood gene expression from IPD patient.


title: E7R_037c17

description:
E7R_037c17_(HG-U133_Plus_2).CEL
Whole blood gene expression from HD_HD_BATCH patient.


title: E7R_039a66

description:
E7R_039a66_(HG-U133_Plus_2).CEL
Whole blood gene expression from CONTROL patient.


title: E7R_037c23

description:
E7R_037c23_(HG-U133_Plus_2).CEL
Whole blood gene expression from HD_HD_BATCH patient.


title: E7R_037b05

description:
E7R_037b05_(HG-U133_Plus_2).CEL
Whole blood gene expression from HD_HD_BATCH patient.


title: E7R_037c16

description:
E7R_037c16_(HG-U133_Plus_2).CEL
Whole blood gene expression from HD_HD_BATCH patient.


title: Neuro_Krainc-2_P03_B12_FRA_TRO_359_01

description:
Neuro_Krainc-2_P03_B12_FRA_TRO_359_01.CEL
Whole blood gene expression from GPD patient.

value: VALIDATION


title: Neuro_Krainc-2_P03_C04_FRA_TRO_363_01

description:
Neuro_Krainc-2_P03_C04_FRA_TRO_363_01.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc-2_P03_B09_FRA_TRO_355_01

description:
Neuro_Krainc-2_P03_B09_FRA_TRO_355_01.CEL
Whole blood gene expression from MSA patient.


title: Neuro_Krainc-2_P03_B05_FRA_TRO_351_01

description:
Neuro_Krainc-2_P03_B05_FRA_TRO_351_01.CEL
Whole blood gene expression from GPD patient.


title: E7R_039a100

description:
E7R_039a100_(HG-U133_Plus_2).CEL
Whole blood gene expression from PSP patient.


title: Neuro_Krainc-2_P03_A12_FRA_TRO_346_01

description:
Neuro_Krainc-2_P03_A12_FRA_TRO_346_01.CEL
Whole blood gene expression from IPD patient.

value: TRAINING


title: Neuro_Krainc-2_P03_B01_FRA_TRO_347_01

description:
Neuro_Krainc-2_P03_B01_FRA_TRO_347_01.CEL
Whole blood gene expression from GPD patient.


title: E7R_037b06

description:
E7R_037b06_(HG-U133_Plus_2).CEL
Whole blood gene expression from HD_HD_BATCH patient.


title: Neuro_Krainc-2_P03_C02_FRA_TRO_361_01

description:
Neuro_Krainc-2_P03_C02_FRA_TRO_361_01.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc-2_P03_B03_FRA_TRO_349_01

description:
Neuro_Krainc-2_P03_B03_FRA_TRO_349_01.CEL
Whole blood gene expression from GPD patient.


title: E7R_037b04

description:
E7R_037b04_(HG-U133_Plus_2).CEL
Whole blood gene expression from HD_HD_BATCH patient.


title: Dp16-Cerebellum: TS254

description:
matrix table name: Matrix-Dp16-Cerebellum
Cerebellum gene expression data from 6-7 month old mice

tag: gender

value: Cerebellum

tag: developmental stage

value: 6-7 month old mice


title: Neuro_Krainc-2_P03_A04_FRA_TRO_338_01

description:
Neuro_Krainc-2_P03_A04_FRA_TRO_338_01.CEL
Whole blood gene expression from IPD patient.

value: whole blood

tag: disease label

tag: age at exam


title: Neuro_Krainc-2_P03_A07_FRA_TRO_341_01

description:
Neuro_Krainc-2_P03_A07_FRA_TRO_341_01.CEL
Whole blood gene expression from CONTROL patient.

tag: batch

tag: learning set

value: Male


title: Neuro_Krainc-2_P02_G06_FRATRO315

description:
Neuro_Krainc-2_P02_G06_FRATRO315.CEL
Whole blood gene expression from IPD patient.

tag: Sex

tag: age at 1st symptoms


title: Neuro_Krainc-2_P03_A05_FRA_TRO_339_01

description:
Neuro_Krainc-2_P03_A05_FRA_TRO_339_01.CEL
Whole blood gene expression from GPD patient.

tag: updrs i

tag: updrs ii


title: Neuro_Krainc-2_P02_G11_FRATRO320

description:
Neuro_Krainc-2_P02_G11_FRATRO320.CEL
Whole blood gene expression from IPD patient.

tag: genetic (mutated pd genes)

tag: updrs iii score on


title: Neuro_Krainc-2_P03_A01_FRA_TRO_335

description:
Neuro_Krainc-2_P03_A01_FRA_TRO_335.CEL
Whole blood gene expression from CONTROL patient.

value: CONTROL


title: Neuro_Krainc-2_P02_F09_FRATRO223

description:
Neuro_Krainc-2_P02_F09_FRATRO223.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_F08_L4031_01

description:
Neuro_Krainc-2_P02_F08_L4031_01.CEL
Whole blood gene expression from IPD patient.

tag: updrs iv

tag: hoehn & yahr (on)


title: Neuro_Krainc-2_P02_G03_FRATRO311

description:
Neuro_Krainc-2_P02_G03_FRATRO311.CEL
Whole blood gene expression from IPD patient.

tag: updrs iii score off

tag: hoehn & yahr (off)


title: Neuro_Krainc-2_P03_A08_FRA_TRO_342_01

description:
Neuro_Krainc-2_P03_A08_FRA_TRO_342_01.CEL
Whole blood gene expression from CONTROL patient.

tag: tissue

tag: moca score


title: Neuro_Krainc-2_P02_G02_FRATRO310

description:
Neuro_Krainc-2_P02_G02_FRATRO310.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_H01_FRATRO322

description:
Neuro_Krainc-2_P02_H01_FRATRO322.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_G04_FRATRO313

description:
Neuro_Krainc-2_P02_G04_FRATRO313.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_F10_FRATRO306

description:
Neuro_Krainc-2_P02_F10_FRATRO306.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_G10_FRATRO319

description:
Neuro_Krainc-2_P02_G10_FRATRO319.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_G01_FRATRO309

description:
Neuro_Krainc-2_P02_G01_FRATRO309.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_G05_FRATRO314_2

description:
Neuro_Krainc-2_P02_G05_FRATRO314_2.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P03_A06_FRA_TRO_340_01

description:
Neuro_Krainc-2_P03_A06_FRA_TRO_340_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_F12_FRATRO308_1

description:
Neuro_Krainc-2_P02_F12_FRATRO308_1.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P03_A10_FRA_TRO_344_01

description:
Neuro_Krainc-2_P03_A10_FRA_TRO_344_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_F01_L3665_01

description:
Neuro_Krainc-2_P02_F01_L3665_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_E12_L4032_01

description:
Neuro_Krainc-2_P02_E12_L4032_01.CEL
Whole blood gene expression from PSP patient.


title: Neuro_Krainc-2_P02_F06_L3656_01

description:
Neuro_Krainc-2_P02_F06_L3656_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P03_A11_FRA_TRO_345_01

description:
Neuro_Krainc-2_P03_A11_FRA_TRO_345_01.CEL
Whole blood gene expression from MSA patient.


title: Neuro_Krainc-2_P02_D10_L2899_01

description:
Neuro_Krainc-2_P02_D10_L2899_01.CEL
Whole blood gene expression from ATYPICAL_PD patient.


title: Neuro_Krainc-2_P02_D11_L3699_01

description:
Neuro_Krainc-2_P02_D11_L3699_01.CEL
Whole blood gene expression from CONTROL patient.

value: NMF


title: Neuro_Krainc-2_P02_F05_L4022_01

description:
Neuro_Krainc-2_P02_F05_L4022_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_D07_L3655_01

description:
Neuro_Krainc-2_P02_D07_L3655_01.CEL
Whole blood gene expression from IPD patient.

value: IPD


title: Neuro_Krainc-2_P02_E09_L3058_01

description:
Neuro_Krainc-2_P02_E09_L3058_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_C09_L3666_01

description:
Neuro_Krainc-2_P02_C09_L3666_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_D08_L4029_01

description:
Neuro_Krainc-2_P02_D08_L4029_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_D01_L3671_01

description:
Neuro_Krainc-2_P02_D01_L3671_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_C07_L3657_01

description:
Neuro_Krainc-2_P02_C07_L3657_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_C03_L4026_01

description:
Neuro_Krainc-2_P02_C03_L4026_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_C02_L3685_01

description:
Neuro_Krainc-2_P02_C02_L3685_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_C04_L3682_01

description:
Neuro_Krainc-2_P02_C04_L3682_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_B12_L3684_01

description:
Neuro_Krainc-2_P02_B12_L3684_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_B10_L4020_01

description:
Neuro_Krainc-2_P02_B10_L4020_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_C01_L3653_01

description:
Neuro_Krainc-2_P02_C01_L3653_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_B02_L3674_01

description:
Neuro_Krainc-2_P02_B02_L3674_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_D04_L4028_01

description:
Neuro_Krainc-2_P02_D04_L4028_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_B07_L1341_01

description:
Neuro_Krainc-2_P02_B07_L1341_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_B01_L3680_01

description:
Neuro_Krainc-2_P02_B01_L3680_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_B08_L3667_01

description:
Neuro_Krainc-2_P02_B08_L3667_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_B03_L3681_01

description:
Neuro_Krainc-2_P02_B03_L3681_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_A10_L3687_01

description:
Neuro_Krainc-2_P02_A10_L3687_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_A09_L3676_01

description:
Neuro_Krainc-2_P02_A09_L3676_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_A06_L3360_01

description:
Neuro_Krainc-2_P02_A06_L3360_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P02_A08_L3675_01

description:
Neuro_Krainc-2_P02_A08_L3675_01.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P02_A11_L3692_01

description:
Neuro_Krainc-2_P02_A11_L3692_01.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P01_B06_L2697-2

description:
Neuro_Krainc-2_P01_B06_L2697-2.CEL
Whole blood gene expression from CBD patient.

value: CBD


title: Neuro_Krainc-2_P01_B08_L2761

description:
Neuro_Krainc-2_P01_B08_L2761.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc-2_P01_B01_L2616

description:
Neuro_Krainc-2_P01_B01_L2616.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P05_C01_FRATRO296

description:
Neuro_Krainc_P05_C01_FRATRO296.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P05_C06_FRATRO301

description:
Neuro_Krainc_P05_C06_FRATRO301.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P05_C09_FRATRO304

description:
Neuro_Krainc_P05_C09_FRATRO304.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P05_B11_FRATRO294

description:
Neuro_Krainc_P05_B11_FRATRO294.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc-2_P01_A03_L1767

description:
Neuro_Krainc-2_P01_A03_L1767.CEL
Whole blood gene expression from DRD patient.

value: DRD


title: Neuro_Krainc_P05_B06_FRATRO288

description:
Neuro_Krainc_P05_B06_FRATRO288.CEL
Whole blood gene expression from HD patient.

value: Female


title: Neuro_Krainc_P05_B04_FRATRO286

description:
Neuro_Krainc_P05_B04_FRATRO286.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P05_B12_FRATRO295

description:
Neuro_Krainc_P05_B12_FRATRO295.CEL
Whole blood gene expression from GPD patient.

value: GPD


title: Neuro_Krainc_P05_B05_FRATRO287

description:
Neuro_Krainc_P05_B05_FRATRO287.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P05_A08_FRATRO277

description:
Neuro_Krainc_P05_A08_FRATRO277.CEL
Whole blood gene expression from IPD patient.


title: Dp16-Cerebellum: TS278

description:
matrix table name: Matrix-Dp16-Cerebellum
Cerebellum gene expression data from 6-7 month old mice

tag: gender

tag: developmental stage


title: Neuro_Krainc_P05_A07_FRATRO275

description:
Neuro_Krainc_P05_A07_FRATRO275.CEL
Whole blood gene expression from CONTROL patient.

tag: disease label

tag: age at exam


title: Neuro_Krainc-2_P03_A09_FRA_TRO_343_01

description:
Neuro_Krainc-2_P03_A09_FRA_TRO_343_01.CEL
Whole blood gene expression from CONTROL patient.

tag: batch

tag: learning set


title: Neuro_Krainc_P05_A05_FRATRO273

description:
Neuro_Krainc_P05_A05_FRATRO273.CEL
Whole blood gene expression from CONTROL patient.

tag: Sex


title: Neuro_Krainc_P05_A02_FRATRO270

description:
Neuro_Krainc_P05_A02_FRATRO270.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P05_A01_FRATRO269

description:
Neuro_Krainc_P05_A01_FRATRO269.CEL
Whole blood gene expression from IPD patient.

tag: age at 1st symptoms

tag: updrs i


title: Neuro_Krainc_P04_H12_FRATRO268_2

description:
Neuro_Krainc_P04_H12_FRATRO268_2.CEL
Whole blood gene expression from IPD patient.

tag: genetic (mutated pd genes)

tag: updrs ii


title: Neuro_Krainc_P05_A12_FRATRO282

description:
Neuro_Krainc_P05_A12_FRATRO282.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_H09_FRATRO264

description:
Neuro_Krainc_P04_H09_FRATRO264.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_H11_FRATRO266_2

description:
Neuro_Krainc_P04_H11_FRATRO266_2.CEL
Whole blood gene expression from IPD patient.

tag: updrs iv


title: Neuro_Krainc_P04_H08_FRATRO262_2

description:
Neuro_Krainc_P04_H08_FRATRO262_2.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_H06_FRATRO259

description:
Neuro_Krainc_P04_H06_FRATRO259.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P05_A11_FRATRO280

description:
Neuro_Krainc_P05_A11_FRATRO280.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_H05_FRATRO258

description:
Neuro_Krainc_P04_H05_FRATRO258.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_H04_FRATRO257

description:
Neuro_Krainc_P04_H04_FRATRO257.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_H07_FRATRO260

description:
Neuro_Krainc_P04_H07_FRATRO260.CEL
Whole blood gene expression from IPD patient.

tag: updrs iii score on

tag: hoehn & yahr (on)


title: Neuro_Krainc_P04_H03_FRATRO256

description:
Neuro_Krainc_P04_H03_FRATRO256.CEL
Whole blood gene expression from IPD patient.

tag: updrs iii score off

value: N


title: Neuro_Krainc_P05_A04_FRATRO272

description:
Neuro_Krainc_P05_A04_FRATRO272.CEL
Whole blood gene expression from CONTROL patient.

tag: tissue

tag: hoehn & yahr (off)


title: Neuro_Krainc_P04_H02_FRATRO255

description:
Neuro_Krainc_P04_H02_FRATRO255.CEL
Whole blood gene expression from IPD patient.

tag: moca score


title: Neuro_Krainc_P04_H01_FRATRO254

description:
Neuro_Krainc_P04_H01_FRATRO254.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_G09_FRATRO250_2

description:
Neuro_Krainc_P04_G09_FRATRO250_2.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_G12_FRATRO253

description:
Neuro_Krainc_P04_G12_FRATRO253.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_G11_FRATRO252

description:
Neuro_Krainc_P04_G11_FRATRO252.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_G06_FRATRO247

description:
Neuro_Krainc_P04_G06_FRATRO247.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_G01_FRATRO242

description:
Neuro_Krainc_P04_G01_FRATRO242.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_G05_FRATRO246

description:
Neuro_Krainc_P04_G05_FRATRO246.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_G07_FRATRO248_2

description:
Neuro_Krainc_P04_G07_FRATRO248_2.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P04_G03_FRATRO244

description:
Neuro_Krainc_P04_G03_FRATRO244.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_G04_FRATRO245

description:
Neuro_Krainc_P04_G04_FRATRO245.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_F09_FRATRO238

description:
Neuro_Krainc_P04_F09_FRATRO238.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_F12_FRATRO241

description:
Neuro_Krainc_P04_F12_FRATRO241.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_F11_FRATRO240

description:
Neuro_Krainc_P04_F11_FRATRO240.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_F10_FRATRO239_1

description:
Neuro_Krainc_P04_F10_FRATRO239_1.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_F04_FRATRO233_1

description:
Neuro_Krainc_P04_F04_FRATRO233_1.CEL
Whole blood gene expression from IPD patient.

value: ND


title: Neuro_Krainc_P04_F06_FRATRO235

description:
Neuro_Krainc_P04_F06_FRATRO235.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_G08_FRATRO249_1

description:
Neuro_Krainc_P04_G08_FRATRO249_1.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_G02_FRATRO243

description:
Neuro_Krainc_P04_G02_FRATRO243.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_F08_FRATRO237

description:
Neuro_Krainc_P04_F08_FRATRO237.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_F03_FRATRO232_2

description:
Neuro_Krainc_P04_F03_FRATRO232_2.CEL
Whole blood gene expression from HD patient.

value: HD


title: Neuro_Krainc_P04_E12_FRATRO229

description:
Neuro_Krainc_P04_E12_FRATRO229.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_E11_FRATRO228

description:
Neuro_Krainc_P04_E11_FRATRO228.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_E09_FRATRO226_2

description:
Neuro_Krainc_P04_E09_FRATRO226_2.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P04_F02_FARTRO231_1

description:
Neuro_Krainc_P04_F02_FARTRO231_1.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_E06_FRATRO222

description:
Neuro_Krainc_P04_E06_FRATRO222.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_E10_FRATRO227

description:
Neuro_Krainc_P04_E10_FRATRO227.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P04_E08_FRATRO225

description:
Neuro_Krainc_P04_E08_FRATRO225.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_F01_FRATRO230

description:
Neuro_Krainc_P04_F01_FRATRO230.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_F07_FRATRO236

description:
Neuro_Krainc_P04_F07_FRATRO236.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_E05_FRATRO221

description:
Neuro_Krainc_P04_E05_FRATRO221.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P04_D10_FRATRO214

description:
Neuro_Krainc_P04_D10_FRATRO214.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_D09_FRATRO213

description:
Neuro_Krainc_P04_D09_FRATRO213.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_E07_FRATRO224

description:
Neuro_Krainc_P04_E07_FRATRO224.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_E03_FRATRO219

description:
Neuro_Krainc_P04_E03_FRATRO219.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P04_E02_FRATRO218

description:
Neuro_Krainc_P04_E02_FRATRO218.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P04_D11_FRATRO215

description:
Neuro_Krainc_P04_D11_FRATRO215.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_D07_FRATRO211

description:
Neuro_Krainc_P04_D07_FRATRO211.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_D06_FRATRO210

description:
Neuro_Krainc_P04_D06_FRATRO210.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_D08_FRATRO212

description:
Neuro_Krainc_P04_D08_FRATRO212.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_E01_FRATRO217

description:
Neuro_Krainc_P04_E01_FRATRO217.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_D12_FRATRO216

description:
Neuro_Krainc_P04_D12_FRATRO216.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_C11_FRATRO203_RPT

description:
Neuro_Krainc_P04_C11_FRATRO203_RPT.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_D02_FRATRO206

description:
Neuro_Krainc_P04_D02_FRATRO206.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_C09_FRATRO201

description:
Neuro_Krainc_P04_C09_FRATRO201.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P04_D03_FRATRO207

description:
Neuro_Krainc_P04_D03_FRATRO207.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_D04_FRATRO208

description:
Neuro_Krainc_P04_D04_FRATRO208.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_C06_FRATRO198

description:
Neuro_Krainc_P04_C06_FRATRO198.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_C05_FRATRO197

description:
Neuro_Krainc_P04_C05_FRATRO197.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_C08_FRATRO200

description:
Neuro_Krainc_P04_C08_FRATRO200.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_D01_FRATRO205

description:
Neuro_Krainc_P04_D01_FRATRO205.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_D05_FRATRO209

description:
Neuro_Krainc_P04_D05_FRATRO209.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_C12_FRATRO204

description:
Neuro_Krainc_P04_C12_FRATRO204.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_C10_FRATRO202

description:
Neuro_Krainc_P04_C10_FRATRO202.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_C02_FRATRO194

description:
Neuro_Krainc_P04_C02_FRATRO194.CEL
Whole blood gene expression from GPD patient.

value: PARKIN


title: Neuro_Krainc_P04_C07_FRATRO199

description:
Neuro_Krainc_P04_C07_FRATRO199.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_B10_FRATRO190

description:
Neuro_Krainc_P04_B10_FRATRO190.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_B11_FRATRO191

description:
Neuro_Krainc_P04_B11_FRATRO191.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_B07_FRATRO187

description:
Neuro_Krainc_P04_B07_FRATRO187.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_C03_FRATRO195

description:
Neuro_Krainc_P04_C03_FRATRO195.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_B09_FRATRO189

description:
Neuro_Krainc_P04_B09_FRATRO189.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_B08_FRATRO188

description:
Neuro_Krainc_P04_B08_FRATRO188.CEL
Whole blood gene expression from CONTROL patient.

value: VALIDATION


title: Neuro_Krainc_P04_B04_FRATRO184

description:
Neuro_Krainc_P04_B04_FRATRO184.CEL
Whole blood gene expression from CONTROL patient.

value: TRAINING


title: Neuro_Krainc_P04_C01_FRATRO193

description:
Neuro_Krainc_P04_C01_FRATRO193.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P04_B05_FRATRO185

description:
Neuro_Krainc_P04_B05_FRATRO185.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_A09_FRATRO177

description:
Neuro_Krainc_P04_A09_FRATRO177.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_A10_FRATRO178_RPT

description:
Neuro_Krainc_P04_A10_FRATRO178_RPT.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_B02_FRATRO182

description:
Neuro_Krainc_P04_B02_FRATRO182.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_A11_FRATRO179

description:
Neuro_Krainc_P04_A11_FRATRO179.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_A06_FRATRO174

description:
Neuro_Krainc_P04_A06_FRATRO174.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_A08_FRATRO176

description:
Neuro_Krainc_P04_A08_FRATRO176.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_A07_FRATRO175

description:
Neuro_Krainc_P04_A07_FRATRO175.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_A04_FRATRO172

description:
Neuro_Krainc_P04_A04_FRATRO172.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_B01_FRATRO181

description:
Neuro_Krainc_P04_B01_FRATRO181.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_B03_FRATRO183

description:
Neuro_Krainc_P04_B03_FRATRO183.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_A12_FRATRO180

description:
Neuro_Krainc_P04_A12_FRATRO180.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P04_A05_FRATRO173

description:
Neuro_Krainc_P04_A05_FRATRO173.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_A03_FRATRO171

description:
Neuro_Krainc_P04_A03_FRATRO171.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_A01_FRATRO169

description:
Neuro_Krainc_P04_A01_FRATRO169.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_H12_FRATRO168

description:
Neuro_Krainc_P03_H12_FRATRO168.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_H10_FRATRO166

description:
Neuro_Krainc_P03_H10_FRATRO166.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_H11_FRATRO167

description:
Neuro_Krainc_P03_H11_FRATRO167.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_H08_FRATRO164

description:
Neuro_Krainc_P03_H08_FRATRO164.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_H04_FRATRO159

description:
Neuro_Krainc_P03_H04_FRATRO159.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P04_A02_FRATRO170

description:
Neuro_Krainc_P04_A02_FRATRO170.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_H05_FRATRO160

description:
Neuro_Krainc_P03_H05_FRATRO160.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_H06_FRATRO161

description:
Neuro_Krainc_P03_H06_FRATRO161.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_H09_FRATRO165

description:
Neuro_Krainc_P03_H09_FRATRO165.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_H02_FRATRO155

description:
Neuro_Krainc_P03_H02_FRATRO155.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_G11_FRATRO152

description:
Neuro_Krainc_P03_G11_FRATRO152.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_H03_FRATRO158

description:
Neuro_Krainc_P03_H03_FRATRO158.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_H07_FRATRO162

description:
Neuro_Krainc_P03_H07_FRATRO162.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P03_G12_FRATRO153

description:
Neuro_Krainc_P03_G12_FRATRO153.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_G10_FRATRO150

description:
Neuro_Krainc_P03_G10_FRATRO150.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_H01_FRATRO154

description:
Neuro_Krainc_P03_H01_FRATRO154.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_G08_FRATRO148

description:
Neuro_Krainc_P03_G08_FRATRO148.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_G09_FRATRO149_3

description:
Neuro_Krainc_P03_G09_FRATRO149_3.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_G05_FRATRO145_RPT

description:
Neuro_Krainc_P03_G05_FRATRO145_RPT.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_G07_FRATRO147

description:
Neuro_Krainc_P03_G07_FRATRO147.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_G06_FRATRO146

description:
Neuro_Krainc_P03_G06_FRATRO146.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_G02_FRATRO141

description:
Neuro_Krainc_P03_G02_FRATRO141.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_F07_FRATRO134

description:
Neuro_Krainc_P03_F07_FRATRO134.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_F03_FRATRO130

description:
Neuro_Krainc_P03_F03_FRATRO130.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_E12_FRATRO126

description:
Neuro_Krainc_P03_E12_FRATRO126.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_E04_FRATRO118

description:
Neuro_Krainc_P03_E04_FRATRO118.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_E02_FRATRO116

description:
Neuro_Krainc_P03_E02_FRATRO116.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_F08_FRATRO135

description:
Neuro_Krainc_P03_F08_FRATRO135.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_D08_FRATRO110

description:
Neuro_Krainc_P03_D08_FRATRO110.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P03_E03_FRATRO117_1

description:
Neuro_Krainc_P03_E03_FRATRO117_1.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_G03_FRATRO143

description:
Neuro_Krainc_P03_G03_FRATRO143.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P03_D11_FRATRO113_2

description:
Neuro_Krainc_P03_D11_FRATRO113_2.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_E06_FRATRO120

description:
Neuro_Krainc_P03_E06_FRATRO120.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_E11_FRATRO125

description:
Neuro_Krainc_P03_E11_FRATRO125.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_F05_FRATRO132

description:
Neuro_Krainc_P03_F05_FRATRO132.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_F12_FRATRO139_1

description:
Neuro_Krainc_P03_F12_FRATRO139_1.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_D06_FRATRO108

description:
Neuro_Krainc_P03_D06_FRATRO108.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_F10_FRATRO137

description:
Neuro_Krainc_P03_F10_FRATRO137.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_D05_FRATRO107_2

description:
Neuro_Krainc_P03_D05_FRATRO107_2.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_E01_FRATRO115

description:
Neuro_Krainc_P03_E01_FRATRO115.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_D12_FRATRO114

description:
Neuro_Krainc_P03_D12_FRATRO114.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_G04_FRATRO144

description:
Neuro_Krainc_P03_G04_FRATRO144.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_D01_FRATRO103

description:
Neuro_Krainc_P03_D01_FRATRO103.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_C12_FRATRO102

description:
Neuro_Krainc_P03_C12_FRATRO102.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P03_C11_FRATRO101

description:
Neuro_Krainc_P03_C11_FRATRO101.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_C08_FRATRO098

description:
Neuro_Krainc_P03_C08_FRATRO098.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_C04_FRATRO094_2

description:
Neuro_Krainc_P03_C04_FRATRO094_2.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_C06_FRATRO096

description:
Neuro_Krainc_P03_C06_FRATRO096.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_C07_FRATRO097

description:
Neuro_Krainc_P03_C07_FRATRO097.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_B12_FRATRO090

description:
Neuro_Krainc_P03_B12_FRATRO090.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_C10_FRATRO100

description:
Neuro_Krainc_P03_C10_FRATRO100.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_C09_FRATRO099

description:
Neuro_Krainc_P03_C09_FRATRO099.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_B09_FRATRO087_1

description:
Neuro_Krainc_P03_B09_FRATRO087_1.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_D10_FRATRO112

description:
Neuro_Krainc_P03_D10_FRATRO112.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_B02_FRATRO073

description:
Neuro_Krainc_P03_B02_FRATRO073.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_A12_FRATRO071

description:
Neuro_Krainc_P03_A12_FRATRO071.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_C02_FRATRO092_1

description:
Neuro_Krainc_P03_C02_FRATRO092_1.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P03_C05_FRATRO095

description:
Neuro_Krainc_P03_C05_FRATRO095.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_A10_FRATRO067

description:
Neuro_Krainc_P03_A10_FRATRO067.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_A08_FRATRO64

description:
Neuro_Krainc_P03_A08_FRATRO64.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_A01_FRATRO57

description:
Neuro_Krainc_P03_A01_FRATRO57.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_B08_FRATRO086

description:
Neuro_Krainc_P03_B08_FRATRO086.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_A07_FRATRO63

description:
Neuro_Krainc_P03_A07_FRATRO63.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_A09_FRATRO065

description:
Neuro_Krainc_P03_A09_FRATRO065.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_B03_FRATRO075

description:
Neuro_Krainc_P03_B03_FRATRO075.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_B07_FRATRO085_RPT

description:
Neuro_Krainc_P03_B07_FRATRO085_RPT.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_A05_FRATRO61

description:
Neuro_Krainc_P03_A05_FRATRO61.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_A04_FRATRO60

description:
Neuro_Krainc_P03_A04_FRATRO60.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_A02_FRATRO58

description:
Neuro_Krainc_P03_A02_FRATRO58.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_A03_FRATRO59

description:
Neuro_Krainc_P03_A03_FRATRO59.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P03_B10_FRATRO088

description:
Neuro_Krainc_P03_B10_FRATRO088.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P03_B01_FRATRO072

description:
Neuro_Krainc_P03_B01_FRATRO072.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_H12_FRATRO56

description:
Neuro_Krainc_P02_H12_FRATRO56.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_H10_FRATRO54

description:
Neuro_Krainc_P02_H10_FRATRO54.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_H06_FRATRO50

description:
Neuro_Krainc_P02_H06_FRATRO50.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P02_H09_FRATRO53

description:
Neuro_Krainc_P02_H09_FRATRO53.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_H08_FRATRO52

description:
Neuro_Krainc_P02_H08_FRATRO52.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_H07_FRATRO51

description:
Neuro_Krainc_P02_H07_FRATRO51.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_H04_FRATRO48

description:
Neuro_Krainc_P02_H04_FRATRO48.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_H02_FRATRO46

description:
Neuro_Krainc_P02_H02_FRATRO46.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_G08_FRATRO40

description:
Neuro_Krainc_P02_G08_FRATRO40.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P02_H05_FRATRO49

description:
Neuro_Krainc_P02_H05_FRATRO49.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P02_G11_FRATRO43

description:
Neuro_Krainc_P02_G11_FRATRO43.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_G10_FRATRO42

description:
Neuro_Krainc_P02_G10_FRATRO42.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P02_G06_FRATRO38

description:
Neuro_Krainc_P02_G06_FRATRO38.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P02_H01_FRATRO45_1

description:
Neuro_Krainc_P02_H01_FRATRO45_1.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_H03_FRATRO47_2

description:
Neuro_Krainc_P02_H03_FRATRO47_2.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_G12_FRATRO44

description:
Neuro_Krainc_P02_G12_FRATRO44.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_G01_FRATRO33

description:
Neuro_Krainc_P02_G01_FRATRO33.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_E12_FRATRO17-2_RPT

description:
Neuro_Krainc_P02_E12_FRATRO17-2_RPT.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F05_FRATRO23_2

description:
Neuro_Krainc_P02_F05_FRATRO23_2.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F04_FRATRO22

description:
Neuro_Krainc_P02_F04_FRATRO22.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_G07_FRATRO39

description:
Neuro_Krainc_P02_G07_FRATRO39.CEL
Whole blood gene expression from HD patient.


title: Neuro_Krainc_P02_F02_FRATRO20

description:
Neuro_Krainc_P02_F02_FRATRO20.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_E09_FRATRO14

description:
Neuro_Krainc_P02_E09_FRATRO14.CEL
Whole blood gene expression from MSA patient.

value: MSA


title: Neuro_Krainc_P02_E07_FRATRO11

description:
Neuro_Krainc_P02_E07_FRATRO11.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_F11_FRATRO31

description:
Neuro_Krainc_P02_F11_FRATRO31.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_E08_FRATRO13

description:
Neuro_Krainc_P02_E08_FRATRO13.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_E04_FRATRO8

description:
Neuro_Krainc_P02_E04_FRATRO8.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_D06_B36

description:
Neuro_Krainc_P02_D06_B36.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: Neuro_Krainc_P02_D04_B29

description:
Neuro_Krainc_P02_D04_B29.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: Neuro_Krainc_P02_C11_L3718

description:
Neuro_Krainc_P02_C11_L3718.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_E06_FRATRO10

description:
Neuro_Krainc_P02_E06_FRATRO10.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_E10_FRATRO15

description:
Neuro_Krainc_P02_E10_FRATRO15.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_E05_FRATRO9

description:
Neuro_Krainc_P02_E05_FRATRO9.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_D05_B32

description:
Neuro_Krainc_P02_D05_B32.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: Neuro_Krainc_P02_D02_B27

description:
Neuro_Krainc_P02_D02_B27.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: Neuro_Krainc_P02_C02_L3605

description:
Neuro_Krainc_P02_C02_L3605.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_D03_B28

description:
Neuro_Krainc_P02_D03_B28.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: Neuro_Krainc_P02_B02_L3517

description:
Neuro_Krainc_P02_B02_L3517.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_B03_L3518

description:
Neuro_Krainc_P02_B03_L3518.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_C08_L3715

description:
Neuro_Krainc_P02_C08_L3715.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_C01_L3604

description:
Neuro_Krainc_P02_C01_L3604.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_F01_FRATRO18

description:
Neuro_Krainc_P02_F01_FRATRO18.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P02_B11_L3602

description:
Neuro_Krainc_P02_B11_L3602.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_B09_L3600

description:
Neuro_Krainc_P02_B09_L3600.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: Neuro_Krainc_P01_H4_L3479

description:
Neuro_Krainc_P01_H4_L3479.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_B10_L3601

description:
Neuro_Krainc_P02_B10_L3601.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_A10_L3513

description:
Neuro_Krainc_P02_A10_L3513.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_B05_L3520

description:
Neuro_Krainc_P02_B05_L3520.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_H10_L3500

description:
Neuro_Krainc_P01_H10_L3500.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_G5_L3457

description:
Neuro_Krainc_P01_G5_L3457.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_G8_L3460

description:
Neuro_Krainc_P01_G8_L3460.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_H6_L3481

description:
Neuro_Krainc_P01_H6_L3481.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_H11_L3501

description:
Neuro_Krainc_P01_H11_L3501.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_A07_L3509

description:
Neuro_Krainc_P02_A07_L3509.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: Neuro_Krainc_P02_A09_L3512

description:
Neuro_Krainc_P02_A09_L3512.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_A02_L3504

description:
Neuro_Krainc_P02_A02_L3504.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_H1_L3472

description:
Neuro_Krainc_P01_H1_L3472.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_A01_L3503

description:
Neuro_Krainc_P02_A01_L3503.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_H3_L3478

description:
Neuro_Krainc_P01_H3_L3478.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_H7_L3484

description:
Neuro_Krainc_P01_H7_L3484.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P02_A05_L3507

description:
Neuro_Krainc_P02_A05_L3507.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_G6_L3458

description:
Neuro_Krainc_P01_G6_L3458.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_G9_L3461

description:
Neuro_Krainc_P01_G9_L3461.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P02_A06_L3508

description:
Neuro_Krainc_P02_A06_L3508.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: Neuro_Krainc_P01_G4_L3456

description:
Neuro_Krainc_P01_G4_L3456.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_G10_L3462

description:
Neuro_Krainc_P01_G10_L3462.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_H2_L3473

description:
Neuro_Krainc_P01_H2_L3473.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_G7_L3459

description:
Neuro_Krainc_P01_G7_L3459.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_G12_L3464

description:
Neuro_Krainc_P01_G12_L3464.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_F9_L3384

description:
Neuro_Krainc_P01_F9_L3384.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_F7_L3381

description:
Neuro_Krainc_P01_F7_L3381.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_F12_L3452

description:
Neuro_Krainc_P01_F12_L3452.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_F1_L3374

description:
Neuro_Krainc_P01_F1_L3374.CEL
Whole blood gene expression from PSP patient.

value: PSP


title: Neuro_Krainc_P01_G3_L3455

description:
Neuro_Krainc_P01_G3_L3455.CEL
Whole blood gene expression from IPD patient.

value: whole blood


title: Neuro_Krainc_P01_F3_L3376

description:
Neuro_Krainc_P01_F3_L3376.CEL
Whole blood gene expression from IPD patient.

value: Male


title: Neuro_Krainc_P01_F6_L3379

description:
Neuro_Krainc_P01_F6_L3379.CEL
Whole blood gene expression from PSP patient.


title: Neuro_Krainc_P01_E6_L3367

description:
Neuro_Krainc_P01_E6_L3367.CEL
Whole blood gene expression from CONTROL patient.

value: CONTROL


title: Neuro_Krainc_P01_F5_L3378

description:
Neuro_Krainc_P01_F5_L3378.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_D9_L3357

description:
Neuro_Krainc_P01_D9_L3357.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_E12_L3373

description:
Neuro_Krainc_P01_E12_L3373.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_E3_L3364

description:
Neuro_Krainc_P01_E3_L3364.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P01_D6_L3350

description:
Neuro_Krainc_P01_D6_L3350.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_C9_L3339

description:
Neuro_Krainc_P01_C9_L3339.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_D12_L3361

description:
Neuro_Krainc_P01_D12_L3361.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_E1_L3362

description:
Neuro_Krainc_P01_E1_L3362.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_D1_L3344

description:
Neuro_Krainc_P01_D1_L3344.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_D8_L3356

description:
Neuro_Krainc_P01_D8_L3356.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_F2_L3375

description:
Neuro_Krainc_P01_F2_L3375.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_D7_L3355

description:
Neuro_Krainc_P01_D7_L3355.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_D11_L3359-2_RPT

description:
Neuro_Krainc_P01_D11_L3359-2_RPT.CEL
Whole blood gene expression from DRD patient.


title: Neuro_Krainc_P01_D3_L3346

description:
Neuro_Krainc_P01_D3_L3346.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_D10_L3358

description:
Neuro_Krainc_P01_D10_L3358.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_D5_L3349

description:
Neuro_Krainc_P01_D5_L3349.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_E11_L3372

description:
Neuro_Krainc_P01_E11_L3372.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_G02_L3454_RPT

description:
Neuro_Krainc_P01_G02_L3454_RPT.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_D2_L3345

description:
Neuro_Krainc_P01_D2_L3345.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_C6_L3336

description:
Neuro_Krainc_P01_C6_L3336.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_C3_L3332

description:
Neuro_Krainc_P01_C3_L3332.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_C12_L3343

description:
Neuro_Krainc_P01_C12_L3343.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_C4_L3333

description:
Neuro_Krainc_P01_C4_L3333.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_F8_L3382

description:
Neuro_Krainc_P01_F8_L3382.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_C10_L3341

description:
Neuro_Krainc_P01_C10_L3341.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_B8_L3369

description:
Neuro_Krainc_P01_B8_L3369.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_C11_L3342

description:
Neuro_Krainc_P01_C11_L3342.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_C5_L3334

description:
Neuro_Krainc_P01_C5_L3334.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_C7_L3337_corr

description:
Neuro_Krainc_P01_C7_L3337_corr.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_C02_L3331_RPT

description:
Neuro_Krainc_P01_C02_L3331_RPT.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_C1_L3330

description:
Neuro_Krainc_P01_C1_L3330.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_B7_L3290_2

description:
Neuro_Krainc_P01_B7_L3290_2.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P01_B5_L3287

description:
Neuro_Krainc_P01_B5_L3287.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P01_B11_L3328

description:
Neuro_Krainc_P01_B11_L3328.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_B02_L3031_RPT

description:
Neuro_Krainc_P01_B02_L3031_RPT.CEL
Whole blood gene expression from CONTROL patient.


title: Neuro_Krainc_P01_A10_L2150

description:
Neuro_Krainc_P01_A10_L2150.CEL
Whole blood gene expression from GENETIC_UNAFFECTED patient.


title: Neuro_Krainc_P01_B1_L2696

description:
Neuro_Krainc_P01_B1_L2696.CEL
Whole blood gene expression from IPD patient.


title: Neuro_Krainc_P01_A2_L2122

description:
Neuro_Krainc_P01_A2_L2122.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P01_A1_L2121

description:
Neuro_Krainc_P01_A1_L2121.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P01_B8_L3291

description:
Neuro_Krainc_P01_B8_L3291.CEL
Whole blood gene expression from GPD patient.


title: Neuro_Krainc_P01_A7_L2127

description:
Neuro_Krainc_P01_A7_L2127.CEL
Whole blood gene expression from GPD patient.