title: genomic DNA from gastric intestinal metaplasia 76

source_name: gastric endoscopic biopsy 76


title: Subject 22, purified B cells, measles virus-stimulated (in vitro)

status: Public on Jan 09 2018

type: SRA

city: Rochester

first: Gregory

middle: A.

last: Poland

state: MN

address: 200 1st St SW

country: USA

institute: Mayo Clinic

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7348_B_Stim.FCC8YFTACXX_L5_R1_IGTTTCG

library_source: transcriptomic

data_processing:
The FASTQ files were processed using a comprehensive pre-processing and analytical pipeline (CAP-miRNA) that assesses read quality (FastQC), trims adapter sequences (Cutadapt), and aligns reads for IGV viewing and detection of mature, precursor, and novel miRNAs (miRDeep2).
Data filtered using a median cuttoff of 4 within each sample type
Normalized using TMM from edgeR (offsets and dispersion provided in processed files )
Genome_build: HG38
Supplementary_files_format_and_content: Comma separated text file contains raw count data and the offset and dispersion generated by the edgeR Rpackage; One row per sample and miRNA for end analysis is SAS GENMOD

molecule: total RNA

organism: Homo sapiens

source_name: purified B cells (from PBMCs isolated from blood)

growth_protocol: Cryopreserved PBMCs/cells were thawed and cultured using standard procedures. B cells and monocytes were purified using a human CD19 MicroBeads positive selection kit (Miltenyi Biotec; San Diego, CA) and a human CD14 MicroBeads positive selection kit (Miltenyi Biotec), respectively. CD4+ T cells were isolated using the CD4+T Cell Isolation Kit (Miltenyi Biotec).

extract_protocol:
Total RNA (including miRNA) from B and T cells was extracted using miRNeasy Mini Kits (Qiagen; Valencia, CA) according to manufacturer’s instructions.
cDNA libraries were created according to the Illumina TruSeq miRNA procedure for small RNAs and combined with Illumina adaptor sequences. miRNA products were PCR-enriched and purified.
Illumina TruSeq miRNA library construction.

treatment_protocol: B cells and monocytes cells were left uninfected, or were infected overnight with the Edmonston strain of MV at a multiplicity of infection 0.2. CD4+ T cells were co-cultured overnight with or without MV-infected monocytes, after which the CD4+ T cell isolation was repeated (on the mixed cultures) to ensure that the T cell samples were not contaminated with monocytes. The purity of the cells was ascertained using flow cytometry.

tag: subject id

value: Subject 22

tag: high/low antibody response to measles vaccination

value: Low

tag: in vitro cell stimulation (or not) with measles virus

value: Stimulated

tag: cell type

value: B cell


title: genomic DNA from gastric intestinal metaplasia 78

type: genomic

city: Singapore

first: Kie Kyon

last: Huang

state: Select State/Province

address: 8 College Road

country: Singapore

institute: Duke-NUS Graduate Medical School

hyb_protocol: Standard Illumina Protocol

scan_protocol: Standard Illumina Protocol

data_processing: minfi's functional normalization function

label: Cy5 and Cy3

molecule: genomic DNA

source_name: gastric endoscopic biopsy 78

label_protocol: Standard Illumina Protocol

extract_protocol: Standard Illumina Protocol

tag: tissue

value: intestinal metaplasia biopsy from gastric body


title: genomic DNA from gastric intestinal metaplasia 73

source_name: gastric endoscopic biopsy 73

value: intestinal metaplasia biopsy from gastric antrum


title: genomic DNA from gastric intestinal metaplasia 69

source_name: gastric endoscopic biopsy 69


title: Subject 22, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7348_CD4_Stim.FCC8YFTACXX_L5_R1_IGGCTAC

source_name: purified CD4+ T cells (from PBMCs isolated from blood)

value: T cell


title: genomic DNA from gastric intestinal metaplasia 74

source_name: gastric endoscopic biopsy 74


title: Subject 21, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7311_CD4_Unstim.FCC8YFTACXX_L1_R1_ITAGCTT

value: Subject 21

value: Unstimulated


title: Subject 21, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7311_CD4_Stim.FCC8YFTACXX_L1_R1_IGGCTAC


title: Subject 22, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7348_CD4_Unstim.FCC8YFTACXX_L5_R1_ITAGCTT


title: genomic DNA from gastric intestinal metaplasia 75

source_name: gastric endoscopic biopsy 75


title: genomic DNA from gastric intestinal metaplasia 68

source_name: gastric endoscopic biopsy 68


title: Subject 21, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7311_B_Unstim.FCC8YFTACXX_L1_R1_IGTGGCC


title: genomic DNA from gastric intestinal metaplasia 66

source_name: gastric endoscopic biopsy 66


title: genomic DNA from gastric intestinal metaplasia 70

source_name: gastric endoscopic biopsy 70


title: Subject 20, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7162_CD4_Unstim.FCC8YFTACXX_L7_R1_ITAGCTT

value: Subject 20


title: Subject 21, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7311_B_Stim.FCC8YFTACXX_L1_R1_IGTTTCG


title: genomic DNA from gastric intestinal metaplasia 59

source_name: gastric endoscopic biopsy 59


title: Subject 20, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7162_CD4_Stim.FCC8YFTACXX_L7_R1_IGGCTAC


title: genomic DNA from gastric intestinal metaplasia 65

source_name: gastric endoscopic biopsy 65


title: genomic DNA from gastric intestinal metaplasia 62

source_name: gastric endoscopic biopsy 62


title: Subject 20, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7162_B_Unstim.FCC8YFTACXX_L7_R1_IGTGGCC


title: genomic DNA from gastric intestinal metaplasia 63

source_name: gastric endoscopic biopsy 63

value: intestinal metaplasia biopsy from gastric cardia


title: genomic DNA from gastric intestinal metaplasia 64

source_name: gastric endoscopic biopsy 64


title: Subject 20, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7162_B_Stim.FCC8YFTACXX_L7_R1_IGTTTCG


title: genomic DNA from gastric intestinal metaplasia 61

source_name: gastric endoscopic biopsy 61


title: genomic DNA from gastric intestinal metaplasia 60

source_name: gastric endoscopic biopsy 60


title: Subject 19, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7119_CD4_Unstim.FCC8YFTACXX_L1_R1_ICGTACG

value: Subject 19

value: High


title: genomic DNA from gastric intestinal metaplasia 71

source_name: gastric endoscopic biopsy 71


title: genomic DNA from gastric intestinal metaplasia 56

source_name: gastric endoscopic biopsy 56


title: genomic DNA from gastric intestinal metaplasia 53

source_name: gastric endoscopic biopsy 53


title: genomic DNA from gastric intestinal metaplasia 55

source_name: gastric endoscopic biopsy 55


title: Subject 19, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7119_CD4_Stim.FCC8YFTACXX_L1_R1_IGAGTGG

source_name: purified CD4+ T cells (from PBMCs isolated from blood)


title: genomic DNA from gastric intestinal metaplasia 57

source_name: gastric endoscopic biopsy 57


title: genomic DNA from gastric intestinal metaplasia 54

source_name: gastric endoscopic biopsy 54


title: genomic DNA from gastric intestinal metaplasia 58

source_name: gastric endoscopic biopsy 58


title: Subject 19, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7119_B_Stim.FCC8YFTACXX_L1_R1_ICAAAAG

source_name: purified B cells (from PBMCs isolated from blood)


title: genomic DNA from gastric intestinal metaplasia 51

source_name: gastric endoscopic biopsy 51


title: Subject 19, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7119_B_Unstim.FCC8YFTACXX_L1_R1_IATGAGC


title: genomic DNA from gastric intestinal metaplasia 47

source_name: gastric endoscopic biopsy 47


title: genomic DNA from gastric intestinal metaplasia 67

source_name: gastric endoscopic biopsy 67


title: genomic DNA from gastric intestinal metaplasia 50

source_name: gastric endoscopic biopsy 50


title: genomic DNA from gastric intestinal metaplasia 49

source_name: gastric endoscopic biopsy 49


title: genomic DNA from gastric intestinal metaplasia 52

source_name: gastric endoscopic biopsy 52


title: Subject 18, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7063_CD4_Stim.FCC8YFTACXX_L8_R1_IACAGTG

value: Subject 18


title: genomic DNA from gastric intestinal metaplasia 41

source_name: gastric endoscopic biopsy 41


title: genomic DNA from gastric intestinal metaplasia 43

source_name: gastric endoscopic biopsy 43


title: genomic DNA from gastric intestinal metaplasia 40

source_name: gastric endoscopic biopsy 40


title: Subject 18, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7063_CD4_Unstim.FCC8YFTACXX_L8_R1_IGCCAAT


title: Subject 18, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7063_B_Unstim.FCC8YFTACXX_L8_R1_ITGACCA


title: Subject 18, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7063_B_Stim.FCC8YFTACXX_L8_R1_ICGATGT


title: genomic DNA from gastric intestinal metaplasia 37

source_name: gastric endoscopic biopsy 37


title: genomic DNA from gastric intestinal metaplasia 39

source_name: gastric endoscopic biopsy 39


title: genomic DNA from gastric intestinal metaplasia 42

source_name: gastric endoscopic biopsy 42


title: genomic DNA from gastric intestinal metaplasia 46

source_name: gastric endoscopic biopsy 46


title: Subject 17, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7051_CD4_Unstim.FCC8YFTACXX_L3_R1_ITAGCTT

source_name: purified CD4+ T cells (from PBMCs isolated from blood)

value: Subject 17


title: genomic DNA from gastric intestinal metaplasia 38

source_name: gastric endoscopic biopsy 38


title: Subject 17, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7051_CD4_Stim.FCC8YFTACXX_L3_R1_IGGCTAC


title: genomic DNA from gastric intestinal metaplasia 48

source_name: gastric endoscopic biopsy 48


title: Subject 17, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7051_B_Unstim.FCC8YFTACXX_L3_R1_IGTGGCC

source_name: purified B cells (from PBMCs isolated from blood)


title: Subject 17, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7051_B_Stim.FCC8YFTACXX_L3_R1_IGTTTCG


title: genomic DNA from gastric intestinal metaplasia 36

source_name: gastric endoscopic biopsy 36


title: genomic DNA from gastric intestinal metaplasia 34

source_name: gastric endoscopic biopsy 34


title: genomic DNA from gastric intestinal metaplasia 32

source_name: gastric endoscopic biopsy 32


title: genomic DNA from gastric intestinal metaplasia 45

source_name: gastric endoscopic biopsy 45


title: genomic DNA from gastric intestinal metaplasia 35

source_name: gastric endoscopic biopsy 35


title: genomic DNA from gastric intestinal metaplasia 30

source_name: gastric endoscopic biopsy 30


title: Subject 16, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7037_CD4_Unstim.FCC8YFTACXX_L1_R1_IATCACG

value: Subject 16


title: genomic DNA from gastric intestinal metaplasia 44

source_name: gastric endoscopic biopsy 44


title: genomic DNA from gastric intestinal metaplasia 33

source_name: gastric endoscopic biopsy 33


title: Subject 16, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7037_CD4_Stim.FCC8YFTACXX_L1_R1_ITTAGGC


title: genomic DNA from gastric intestinal metaplasia 29

source_name: gastric endoscopic biopsy 29


title: Subject 16, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7037_B_Stim.FCC8YFTACXX_L1_R1_IGATCAG


title: Subject 15, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7028_CD4_Unstim.FCC8YFTACXX_L3_R1_ICGTACG

value: Subject 15


title: genomic DNA from gastric intestinal metaplasia 25

source_name: gastric endoscopic biopsy 25


title: genomic DNA from gastric intestinal metaplasia 31

source_name: gastric endoscopic biopsy 31


title: Subject 15, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7028_CD4_Stim.FCC8YFTACXX_L3_R1_IGAGTGG


title: genomic DNA from gastric intestinal metaplasia 26

source_name: gastric endoscopic biopsy 26


title: genomic DNA from gastric intestinal metaplasia 23

source_name: gastric endoscopic biopsy 23


title: genomic DNA from gastric intestinal metaplasia 24

source_name: gastric endoscopic biopsy 24


title: Subject 15, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7028_B_Unstim.FCC8YFTACXX_L3_R1_IATGAGC


title: genomic DNA from gastric intestinal metaplasia 27

source_name: gastric endoscopic biopsy 27


title: Subject 15, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7028_B_Stim.FCC8YFTACXX_L3_R1_ICAAAAG


title: genomic DNA from gastric intestinal metaplasia 20

source_name: gastric endoscopic biopsy 20


title: genomic DNA from gastric intestinal metaplasia 15

source_name: gastric endoscopic biopsy 15


title: genomic DNA from gastric intestinal metaplasia 22

source_name: gastric endoscopic biopsy 22


title: genomic DNA from gastric intestinal metaplasia 19

source_name: gastric endoscopic biopsy 19


title: genomic DNA from gastric intestinal metaplasia 21

source_name: gastric endoscopic biopsy 21


title: Subject 14, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7026_B_Unstim.FCC8YFTACXX_L5_R1_IACTTGA

source_name: purified B cells (from PBMCs isolated from blood)

value: Subject 14


title: Subject 14, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7026_B_Stim.FCC8YFTACXX_L5_R1_IGATCAG


title: genomic DNA from gastric intestinal metaplasia 17

source_name: gastric endoscopic biopsy 17


title: Subject 16, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7037_B_Unstim.FCC8YFTACXX_L1_R1_IACTTGA


title: genomic DNA from gastric intestinal metaplasia 28

source_name: gastric endoscopic biopsy 28


title: Subject 13, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7022_B_Unstim.FCC8YFTACXX_L6_R1_ITGACCA

value: Subject 13

value: Low


title: Subject 14, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7026_CD4_Unstim.FCC8YFTACXX_L5_R1_IATCACG

source_name: purified CD4+ T cells (from PBMCs isolated from blood)


title: genomic DNA from gastric intestinal metaplasia 14

source_name: gastric endoscopic biopsy 14


title: Subject 12, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7006_CD4_Unstim.FCC8YFTACXX_L6_R1_IAGTTCC

value: Subject 12


title: Subject 12, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7006_CD4_Stim.FCC8YFTACXX_L6_R1_IAGTCAA

value: Stimulated


title: genomic DNA from gastric intestinal metaplasia 13

source_name: gastric endoscopic biopsy 13

value: intestinal metaplasia biopsy from gastric antrum


title: Subject 13, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7022_CD4_Stim.FCC8YFTACXX_L6_R1_IACAGTG

value: T cell


title: genomic DNA from gastric intestinal metaplasia 16

source_name: gastric endoscopic biopsy 16


title: genomic DNA from gastric intestinal metaplasia 18

source_name: gastric endoscopic biopsy 18


title: Subject 12, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7006_B_Stim.FCC8YFTACXX_L6_R1_ICAGATC

value: B cell


title: genomic DNA from gastric intestinal metaplasia 7

source_name: gastric endoscopic biopsy 7


title: Subject 11, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7003_CD4_Unstim.FCC8YFTACXX_L4_R1_IAGTTCC

value: Subject 11

value: Unstimulated


title: genomic DNA from gastric intestinal metaplasia 11

source_name: gastric endoscopic biopsy 11


title: Subject 12, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7006_B_Unstim.FCC8YFTACXX_L6_R1_ICTTGTA


title: Subject 11, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7003_CD4_Stim.FCC8YFTACXX_L4_R1_IAGTCAA


title: genomic DNA from gastric intestinal metaplasia 10

source_name: gastric endoscopic biopsy 10


title: Subject 11, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7003_B_Unstim.FCC8YFTACXX_L4_R1_ICTTGTA


title: genomic DNA from gastric intestinal metaplasia 9

source_name: gastric endoscopic biopsy 9


title: genomic DNA from gastric intestinal metaplasia 8

source_name: gastric endoscopic biopsy 8


title: Subject 11, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7003_B_Stim.FCC8YFTACXX_L4_R1_ICAGATC


title: Subject 10, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6424_B_Unstim.FCC8YFTACXX_L2_R1_ICTTGTA

value: Subject 10


title: Subject 10, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6424_B_Stim.FCC8YFTACXX_L2_R1_ICAGATC


title: Subject 9, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6410_CD4_Unstim.FCC8YFTACXX_L3_R1_IATCACG

value: Subject 9


title: genomic DNA from gastric intestinal metaplasia 4

source_name: gastric endoscopic biopsy 4


title: Subject 9, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6410_B_Unstim.FCC8YFTACXX_L3_R1_IACTTGA

value: High


title: Subject 9, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6410_CD4_Stim.FCC8YFTACXX_L3_R1_ITTAGGC


title: Subject 9, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6410_B_Stim.FCC8YFTACXX_L3_R1_IGATCAG


title: Subject 8, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6276_CD4_Unstim.FCC8YFTACXX_L5_R1_ICGTACG

value: Subject 8


title: genomic DNA from gastric intestinal metaplasia 2

source_name: gastric endoscopic biopsy 2


title: Subject 8, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6276_B_Unstim.FCC8YFTACXX_L5_R1_IATGAGC


title: genomic DNA from gastric intestinal metaplasia 6

source_name: gastric endoscopic biopsy 6


title: Subject 7, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6275_CD4_Stim.FCC8YFTACXX_L4_R1_IACAGTG

value: Subject 7


title: Subject 7, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6275_B_Unstim.FCC8YFTACXX_L4_R1_ITGACCA


title: Subject 8, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6276_B_Stim.FCC8YFTACXX_L5_R1_ICAAAAG


title: genomic DNA from gastric intestinal metaplasia 5

source_name: gastric endoscopic biopsy 5


title: Subject 7, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6275_CD4_Unstim.FCC8YFTACXX_L4_R1_IGCCAAT


title: genomic DNA from gastric intestinal metaplasia 3

source_name: gastric endoscopic biopsy 3


title: Subject 7, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6275_B_Stim.FCC8YFTACXX_L4_R1_ICGATGT

source_name: purified B cells (from PBMCs isolated from blood)


title: Subject 8, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6276_CD4_Stim.FCC8YFTACXX_L5_R1_IGAGTGG


title: Subject 6, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6273_T_Unstim.FCC8YFTACXX_L6_R1_IGTGAAA

value: Subject 6


title: genomic DNA from gastric intestinal metaplasia 1

source_name: gastric endoscopic biopsy 1


title: Subject 6, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6273_T_Stim.FCC8YFTACXX_L6_R1_IGTCCGC

source_name: purified CD4+ T cells (from PBMCs isolated from blood)


title: Subject 5, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6265_CD4_Unstim_.FCC8YFTACXX_L7_R1_IATCACG

value: Subject 5


title: Subject 6, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6273_B_Unstim.FCC8YFTACXX_L6_R1_ICCGTCC


title: Subject 6, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6273_B_Stim.FCC8YFTACXX_L6_R1_IATGTCA


title: Subject 5, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6265_CD4_Stim.FCC8YFTACXX_L7_R1_ITTAGGC


title: Subject 5, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6265_B_Stim.FCC8YFTACXX_L7_R1_IGATCAG


title: Subject 13, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7022_CD4_Unstim.FCC8YFTACXX_L6_R1_IGCCAAT


title: Subject 5, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6265_B_Unstim.FCC8YFTACXX_L7_R1_IACTTGA


title: Subject 4, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6046_B_Unstim.FCC8YFTACXX_L2_R1_ICCGTCC

value: Subject 4


title: Subject 4, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6046_B_Stim.FCC8YFTACXX_L2_R1_IATGTCA


title: Subject 3, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_2021_B_Unstim.FCC8YFTACXX_L4_R1_ICCGTCC

value: Subject 3


title: Subject 3, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_2021_CD4_Unstim.FCC8YFTACXX_L4_R1_IGTGAAA

value: Low


title: Subject 13, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7022_B_Stim.FCC8YFTACXX_L6_R1_ICGATGT

value: Subject 13


title: Subject 3, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_2021_CD4_Stim.FCC8YFTACXX_L4_R1_IGTCCGC

value: Stimulated


title: Subject 4, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6046_CD4_Stim.FCC8YFTACXX_L2_R1_IGTCCGC


title: genomic DNA from gastric intestinal metaplasia 12

source_name: gastric endoscopic biopsy 12

value: intestinal metaplasia biopsy from gastric antrum


title: Subject 3, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_2021_B_Stim.FCC8YFTACXX_L4_R1_IATGTCA


title: Subject 2, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_1280_CD4_Stim.FCC8YFTACXX_L8_R1_IGTCCGC

value: Subject 2

value: T cell


title: Subject 2, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_1280_CD4_Unstim.FCC8YFTACXX_L8_R1_IGTGAAA


title: Subject 1, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_1214_CD4_Unstim.FCC8YFTACXX_L8_R1_IAGTTCC

value: Subject 1


title: Subject 2, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_1280_B_Unstim.FCC8YFTACXX_L8_R1_ICCGTCC

value: Unstimulated

value: B cell


title: Subject 1, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_1214_B_Stim.FCC8YFTACXX_L8_R1_ICAGATC


title: Subject 2, purified B cells, measles virus-stimulated (in vitro)

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_1280_B_Stim.FCC8YFTACXX_L8_R1_IATGTCA


title: Subject 1, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_1214_CD4_Stim.FCC8YFTACXX_L8_R1_IAGTCAA


title: Subject 4, purified CD4+ T cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_6046_CD4_Unstim.FCC8YFTACXX_L2_R1_IGTGAAA


title: MG_UKJ_skin_CC7

status: Public on Jan 08 2018

city: Jena

first: JenAge

last: Project

address: Beutenbergstr. 11

country: Germany

institute: Leibniz Institute for Age Research - Fritz Lipmann Institute

data_processing:
Illumina's bcl2fastq v1.8.3/ v1.8.4 was used for extraction of FASTQ files.
Reads were mapped using Tophat (v2.0.6) to the genome taken the annotation into account:tophat2 -p 24 -o ${FQFILE%.*} -g 1 --no-coverage-search --transcriptome-index=transcriptome_data/Homo_sapiens.GRCh37.66 GRCh37.66 $FQFILE
Counting of reads per gene was done using either htseq-count v0.5.3p9 (htseq-count --quiet --stranded=no --idattr=gene_id --mode=union SAMFILE Hsa.gtf > OUTPUTFILE) or featureCounts v1.4.3-p1 (featureCounts -T 8 -a Hsa.gtf -s 0 -t exon -g gene_id -o featureCounts_gene.txt $SAMFILE)
Counts were normalized to RPKM values as described in Mortazavi et al. (2008).
Genome_build: Ensembl GRCh37.66
Supplementary_files_format_and_content: Excel file include raw counts and RPKMs.

source_name: total RNA extracted from skin

extract_protocol:
Total RNA from was extracted as described (Baumgart et al., 2012; PMID:22487494). RNA obtained from blood were processed using the GLOBINclear™ Kit (human) in order to deplet globin mRNA using manufacturer's description.
Preparation of libraries was done using Illumina’s TruSeq RNA sample prep kit v2 following the manufacturer’s instruction. HiSeq2500; single 50bp

tag: age

value: skin


title: MG_UKJ_skin_BB6


title: MG_UKJ_skin_A2T


title: MG_UKJ_skin_AA5


title: MG_UKJ_skin_BB8


title: MG_UKJ_blood_DD5

data_processing:
Illumina's bcl2fastq v1.8.4 was used for extraction of FASTQ files.
Reads were mapped using Tophat (v2.0.6; Parameter:  no coverage search, max. multihits=1)
Counting of reads per gene was done using featureCounts (v1.4.3-p1)
Counts were normalized to RPKM values as described in Mortazavi et al. (2008) taken gene lengths into account given by  featureCounts
Genome_build: Ensembl GRCh37.66
Supplementary_files_format_and_content: Excel file include raw counts and RPKMs.

source_name: total RNA extracted from blood_old_2

extract_protocol:
Total RNA from was extracted as described (Baumgart et al., 2012; PMID:22487494). RNA was processed using the GLOBINclear™ Kit (human) in order to deplet globin mRNA using manufacturer's description.
Preparation of libraries was done using Illumina’s TruSeq RNA sample prep kit v2 following the manufacturer’s instruction.

value: 75-80 years

value: blood


title: MG_UKJ_blood_DD7


title: MG_UKJ_blood_DD4


title: MG_UKJ_blood_DD6


title: MG_UKJ_blood_DD8


title: MG_UKJ_blood_DD3


title: Subject 14, purified CD4+ T cells, stimulated by mesles virus-infected APCs/macrophages

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: CD4_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_7026_CD4_Stim.FCC8YFTACXX_L5_R1_ITTAGGC

value: Subject 14

value: High


title: MG_UKJ_blood_DD1


title: MG_UKJ_blood_CC6

source_name: total RNA extracted from blood_old_1

value: 60-65 years


title: MG_UKJ_blood_CC7


title: Subject 1, purified B cells, unstimulated

description:
cDNA libraries were created from total RNA according to manufacturer's instructions and combined with Illumina adaptor sequences using standard procedures. Twelve samples were multiplexed in each lane. Lanes were balanced by cell type, immune response status and sex. Single-end read sequencing was performed using the Illumina HiSeq 2000.
processed data file: B_Cell_miRNA_for_SAS.csv
160719_SN414_0501_BC8YFTACXX.s_1214_B_Unstim.FCC8YFTACXX_L8_R1_ICTTGTA


title: MG_UKJ_blood_CC4


title: MG_UKJ_blood_CC8


title: MG_UKJ_blood_DD2


title: MG_UKJ_blood_CC5


title: MG_UKJ_blood_CC2


title: MG_UKJ_blood_CC3


title: MG_UKJ_blood_CC1


title: MG_UKJ_blood_BB6

source_name: total RNA extracted from blood_mature_2

value: 45-50 years


title: MG_UKJ_blood_BB9


title: MG_UKJ_blood_BB7


title: MG_UKJ_blood_BB5


title: MG_UKJ_blood_BB4


title: MG_UKJ_blood_BB8


title: MG_UKJ_blood_BB3


title: MG_UKJ_blood_AA8

source_name: total RNA extracted from blood_young

value: 24-29 years

value: young


title: MG_UKJ_blood_BB2


title: MG_UKJ_blood_AA7


title: MG_UKJ_blood_AA6


title: Aldosterone-producing-adenoma_414

city: Setagaya

first: Kazuhiko

last: Nakabayashi

state: Tokyo

department: Department of Maternal-Fetal Biology

country: Japan

institute: National Research Institute for Child Health and Development

hyb_protocol: Bisulfite-converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol.

scan_protocol: Beadchip arrays were imaged using the iScan system with standard recommended Illumina scanner setting.

data_processing:
Genome Studio V2011.2 (Illumina)
Normalized average beta value. The methylation level of each of the >  850,000 CpG sites was calculated using the GenomeStudio Methylation Module 1.9.0 (Illumina). Normalization was performed using Normalization to Internal Controls and Background Subtraction options implemented in the Methylation Module 1.9.0.
Unmethylated and methylated signal intensities in APA_EPIC_matrix-signal-intensities.txt supplementary file

label: Cy3, Cy5

source_name: Aldosterone-producing adenoma

label_protocol: Standard Illumina labelling protocol

extract_protocol: Genomic DNA was isolated from APA and CPA tissues of the 42 patients using All Prep DNA/RNA Mini kit (Qiagen, Valencia, CA) according to the manufacturer’s instruction.

value: adenoma

tag: somatically mutated gene


title: Aldosterone-producing-adenoma_365


title: Cortisol-producing-adenoma_327

source_name: Cortisol-producing adenoma

value: Not tested


title: Aldosterone-producing-adenoma_378


title: Aldosterone-producing-adenoma_372


title: MG_UKJ_blood_AA5


title: Cortisol-producing-adenoma_328


title: Aldosterone-producing-adenoma_Y05


title: Aldosterone-producing-adenoma_354


title: Cortisol-producing-adenoma_282


title: MG_UKJ_blood_AA4


title: Cortisol-producing-adenoma_305


title: Aldosterone-producing-adenoma_367

value: Not detected


title: Aldosterone-producing-adenoma_339


title: Aldosterone-producing-adenoma_310


title: Aldosterone-producing-adenoma_360


title: Aldosterone-producing-adenoma_403


title: MG_UKJ_blood_AA3


title: Aldosterone-producing-adenoma_321


title: Aldosterone-producing-adenoma_293


title: MG_UKJ_blood_AA2


title: Aldosterone-producing-adenoma_325


title: Aldosterone-producing-adenoma_362


title: Aldosterone-producing-adenoma_356


title: Aldosterone-producing-adenoma_349


title: MG_UKJ_blood_AA1


title: Aldosterone-producing-adenoma_347


title: Aldosterone-producing-adenoma_350


title: Aldosterone-producing-adenoma_352


title: Cortisol-producing-adenoma_295


title: Aldosterone-producing-adenoma_370


title: Aldosterone-producing-adenoma_396


title: Vitd.10nM_3, biological replicate #3

type: RNA

city: Pierre Bénite

first: emmanuelle

last: meugnier

address: Cens Eli Bat 2 D- Hopital Lyon Sud

country: France

description: Gene expression after 72H of treatment with 10nM of Vitamin D

hyb_protocol: 1.65 ug of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes in a reaction volume of 55µl containing 1x Agilent fragmentation buffer and 2x Agilent blocking agent following the manufacturers instructions. On completion of the fragmentation reaction, 55µl of 2x Agilent hybridization buffer was added to the fragmentation mixture and hybridized to Agilent Mouse GE 4*44K V2 Microarray  for 17 hours at 65°C in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed 1 minute at room temperature with GE Wash Buffer 1 (Agilent) and 1 minute with 37°C GE Wash buffer 2 (Agilent), then dried immediately.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner using one color scan setting for 4x44k array slides.

data_processing: The scanned images were analyzed with Feature Extraction Software 11.5.1.1 (Agilent) using default parameters .  Data treatment was performed with bioconductor and Limma library. Background substraction was performed using the Normexp correction with offset =50. Quantile normalization was then applied.  Features flagged in Feature Extraction as control, as Feature Non-uniform outliers, saturating or too weak were excluded.

organism: Mus musculus

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.2 ug RNA using the Low Input Quick Amp labeling One color : Cy3 (Agilent) according to the manufacturer's instructions, followed by RNAeasy column purification (QIAGEN).  Dye incorporation and cRNA yield were checked with the NanoDrop ND-1000 Spectrophotometer.

extract_protocol: RNA was extracted with Trizol (Life Technologies) following the manufacturer's recommendations.  RNA was quantified using a NanoDrop-1000 spectrophotometer and quality was monitored with the Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA).

tag: treatment

value: 10 nM 1,25 (OH)2-vitamine D3


title: Aldosterone-producing-adenoma_357


title: Aldosterone-producing-adenoma_320


title: Vitd.1nM_3, biological replicate #3

description: Gene expression after 72H of treatment with 1nM of Vitamine D

value: 1 nM 1,25 (OH)2-vitamine D3


title: Control 3, biological replicate #3

description: Gene expression after 72H of treatment with vehicule

value: vehicule control


title: Control 2, biological replicate #2


title: Aldosterone-producing-adenoma_301


title: Vitd.10nM_1, biological replicate #1


title: Control 1, biological replicate #1


title: Vitd.1nM_1, biological replicate #1


title: Vitd.10nM_2, biological replicate #2


title: Vitd.1nM_2, biological replicate #2


title: MG_UKJ_skin_DD8

extract_protocol:
Total RNA from was extracted as described (Baumgart et al., 2012; PMID:22487494). RNA obtained from blood were processed using the GLOBINclear™ Kit (human) in order to deplet globin mRNA using manufacturer's description.
Preparation of libraries was done using Illumina’s TruSeq RNA sample prep kit v2 following the manufacturer’s instruction.


title: sh4BATF3_repl3

city: Essen

first: Ludger

last: Klein-Hitpass

address: Virchowstr. 173

department: Universitaetsklinikum

institute: Institut fuer Zellbiologie

hyb_protocol: Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45°C on GeneChip HG-U133Plus_2. GeneChips were washed and stained in the Affymetrix Fluidics Station 450 using the Affymetrix Hybridization, Wash and Stain Kit..

scan_protocol: Arrays were scanned in a GeneChip 3000 scanner with G7 update.

data_processing: The data were analyzed with MAS5 using Affymetrix default analysis settings and global scaling to a target intensity of 1000 as normalization method.

label: Biotin

source_name: L-428 HRS cells transduced with BATF3-targeting shRNA

label_protocol: Biotinylated cRNA were prepared according to the Affymetrix ExpressKit protocol starting from 200 ng total RNA.

growth_protocol: L-428 HRS cells were maintained in RPMI 1640 + 10% FBS (foetal bovine serum) supplemented with 1% penicillin (100 U/ml) and streptomycin (100 μg/ ml). Cells were cultured in a humidified atmosphere with 5% CO2 at 37°C.

extract_protocol: Total RNA was isolated using RNeasy Micro Kit (Qiagen) according to manufacturers instructions including on-column DNase digestion.  Total-RNA concentration and purity of total-RNA samples was measured with the NanoDrop 1000 spectrophotometer (NanoDrop Technologies/Thermo Scientific).

treatment_protocol: L-428 cells were spin-infected in medium supplemented with 8 µg/ml polybrene. After 72 hours, GFP+ (transduced) cells were FACS-sorted and cell pellets were stored at -80°C.


title: sh4BATF3_repl1


title: MG_UKJ_skin_DD7


title: sh4BATF3_repl2


title: shLuciferase_repl1

source_name: L-428 HRS cells transduced with non-targeting shRNA


title: MG_UKJ_skin_DD5


title: MG_UKJ_skin_DD4


title: shLuciferase_repl3


title: MG_UKJ_skin_DD2


title: cortical neuron_E17_16hr_1kPa_exp2

city: Taipei

first: Pei-Lin

last: Cheng

address: No. 128 Acdemia Rd., Section 2, Nankang

country: Taiwan

institute: Institue of Molecular Biology, Academia Sinica

description: gene expression profile of 16-hr cortical culture on 1 kPa gel

hyb_protocol: Hybridizations were performed with Agilent ”Gene Expression Hybridization” kit. The chips were washed with the Gene Expression Wash Pack according to the instructions.

scan_protocol: Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505C) using one color scan setting for 8x60k array slides.

data_processing: The scanned images were analyzed with Feature Extraction Software10.5.1 (Agilent) ;protocol GE1-105_D08 and Grid: 028279_D_F_20131202) to obtain background subtracted and spatially detrended Processed Signal intensities.

organism: Rattus norvegicus

source_name: E17 rat embryo

label_protocol: 200 ng of purified RNA was amplified and dye labeled using Agilent’s Low Input Quick Amp Labeling kit and RNA Spike In kit (Agilent Technologies, California, USA)

growth_protocol: Cortical neurons were prepared from E17.5 rat embryos as previously described (Dotti et al., 1988), and were cultured in neurobasal medium supplemented with Gem21 NeuroPlexTM with 2% serum. Isolated cortical neurons were plated on polyacrylamide gels with different stiffness(0.1, 1, 20 kPa) or on coverslips for 5 or 16 hours.

extract_protocol: RNA were prepared by using commercial RNA kit (QuickGene RNA cultured cell kit S, Kurabo Industries Ltd.) following the manufacturer's instruction. The extraction protocol includes cell lysis, column binding and elution. RNA concentrations were quantified using a NanoDrop Spectrophotometer ND-1000 (NanoDrop Technologies, Wilmington, ED). RNA quality was assessed using a 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA) based on the following criteria: RNA integrity (number) >8.0, rRNA ratio (28S/18S) >1.8, and the proportion of 28S and 18S (amount) >40%.

tag: developmental stage

value: cortical neuron

tag: substrate

value: 1 kPa gel

tag: time course

value: 16-hr culture


title: cortical neuron_E17_16hr_glass_exp2

description: gene expression profile of 16-hr cortical culture on glass

value: glass


title: MG_UKJ_skin_DD3

value: skin


title: MG_UKJ_skin_DD1


title: cortical neuron_E17_16hr_1kPa_exp3


title: Aldosterone-producing-adenoma_275


title: cortical neuron_E17_16hr_20kPa_exp2

description: gene expression profile of 16-hr cortical culture on 20 kPa gel

value: 20 kPa gel


title: cortical neuron_E17_16hr_20kPa_exp1


title: cortical neuron_E17_16hr_20kPa_exp3


title: cortical neuron_E17_16hr_glass_exp1


title: cortical neuron_E17_16hr_glass_exp3


title: cortical neuron_E17_16hr_1kPa_exp1


title: cortical neuron_E17_5hr_glass_exp3

description: gene expression profile of 5-hr cortical culture on glass

value: 5-hr culture


title: Aldosterone-producing-adenoma_250


title: cortical neuron_E17_5hr_glass_exp2


title: cortical neuron_E17_16hr_0.1kPa_exp3

description: gene expression profile of 16-hr cortical culture on 0.1 kPa gel

value: 0.1 kPa gel


title: cortical neuron_E17_16hr_0.1kPa_exp1


title: Aldosterone-producing-adenoma_289


title: cortical neuron_E17_16hr_0.1kPa_exp2


title: Aldosterone-producing-adenoma_244


title: Aldosterone-producing-adenoma_242


title: shLuciferase_repl2


title: MG_UKJ_skin_D2T


title: Aldosterone-producing-adenoma_122


title: MG_UKJ_skin_D13T


title: MG_UKJ_skin_D14T


title: Aldosterone-producing-adenoma_230


title: MG_UKJ_skin_D12T


title: Aldosterone-producing-adenoma_216


title: cortical neuron_E17_5hr_glass_exp1


title: MG_UKJ_skin_D1T


title: cortical neuron_E17_5hr_20kPa_exp2

description: gene expression profile of 5-hr cortical culture on 20 kPa gel


title: MG_UKJ_skin_D7T


title: Aldosterone-producing-adenoma_224


title: cortical neuron_E17_5hr_20kPa_exp1


title: cortical neuron_E17_5hr_0.1kPa_exp3

description: gene expression profile of 5-hr cortical culture on 0.1 kPa gel


title: cortical neuron_E17_5hr_20kPa_exp3


title: cortical neuron_E17_5hr_1kPa_exp2

description: gene expression profile of 5-hr cortical culture on 1 kPa gel


title: tumor_ovarian [JB4387V], Dataset A

city: New York

first: Li-Xuan

last: Qin

state: New York

address: 485 Lexington Ave

department: Epidemiology and Biostatistics

institute: Memorial Sloan Kettering Cancer Center

description:
JB4387V
microRNA expression of tumor tissue.
Total RNA or miRNA

hyb_protocol: Human miRNA microarrays (Agilent Technologies), containing 3,523 markers that represent 1,205 human and 142 human viral miRNAs, were used for miRNA expression profiling according to the manufacturer’s protocol.

scan_protocol: Slides were scanned on the Agilent DNA Microarray Scanner G2505C US83903565 using one color scan setting.

data_processing: The scanned images were analyzed with Feature Extraction Software 10.7.3.1 (Agilent) using default parameters. Logged 2 transformation followed by median probe-set summarization was done in R-3.3.0 software.

source_name: ovarian tumor sample

label_protocol: For samples meeting the quality control standards, 200 ng of total RNA was labeled using the miRNA Complete Labeling and Hybridization Kit (Agilent). The manufacturer's instructions were followed.

extract_protocol: Sample preparation used strict quality control on the specimens. Freshly harvested tissue was snap frozen for eventual cryomold embedding and RNA extraction or microarray analysis. Before RNA extraction, a 5-um hematoxylin and eosin histologic section was cut from the top of the cryomold to assess for tumor content and percentage of necrosis. For any specimens with less than 60% tumor cell nuclei, we used macrodissection to obtain enriched areas so as to make the specimen usable for RNA extraction and as uniform as possible. All specimens had less than 20% necrosis. All pathology specimens used for molecular study were diagnosed by dedicated gynecologic pathologists to establish histologic cell type, grade of malignancy, and site of origin. RNA was extracted from 30 to 100 mg of macrodissected cryomold tissue using the Ambion mirVana miRNA Isolation Kit (Ambion) according to the manufacturer’s protocol. Total RNA yield and quality were assessed using a NanoDrop spectrophotometer and an Agilent Bioanalyzer.

tag: disease state

value: advanced serous ovarian cancer

value: tumor


title: MG_UKJ_skin_CC8


title: MG_UKJ_skin_CC6


title: tumor_endometrial [JB1603E], Dataset A

description:
JB1603E
microRNA expression of tumor tissue.
Total RNA or miRNA

source_name: endometrial tumor sample

value: endometrioid endometrial cancer


title: cortical neuron_E17_5hr_1kPa_exp3


title: tumor_ovarian [GL4487V], Dataset A

description:
GL4487V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4442V], Dataset A

description:
JB4442V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5307E], Dataset A

description:
JB5307E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: cortical neuron_E17_5hr_1kPa_exp1


title: Aldosterone-producing-adenoma_222

value: adenoma


title: tumor_ovarian [JB4448V], Dataset A

description:
JB4448V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5273E], Dataset A

description:
JB5273E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_D10T


title: cortical neuron_E17_5hr_0.1kPa_exp2


title: MG_UKJ_skin_D11T


title: tumor_ovarian [JB1989V], Dataset A

description:
JB1989V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5294E], Dataset A

description:
JB5294E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB5051V], Dataset A

description:
JB5051V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1533E], Dataset A

description:
JB1533E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_CC5


title: Aldosterone-producing-adenoma_063


title: tumor_endometrial [JB1677E], Dataset A

description:
JB1677E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: Aldosterone-producing-adenoma_217


title: MG_UKJ_skin_CC3


title: tumor_ovarian [JB4534V], Dataset A

description:
JB4534V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1905E], Dataset A

description:
JB1905E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_CC2


title: MG_UKJ_skin_C6T


title: MG_UKJ_skin_CC1


title: tumor_ovarian [GL3537V], Dataset A

description:
GL3537V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: cortical neuron_E17_5hr_0.1kPa_exp1

description: gene expression profile of 5-hr cortical culture on 0.1 kPa gel


title: MG_UKJ_skin_CC4


title: MG_UKJ_skin_C9T


title: MG_UKJ_skin_C3T


title: MG_UKJ_skin_C2T


title: MG_UKJ_skin_C12T


title: MG_UKJ_skin_BB9


title: MG_UKJ_skin_BB7


title: MG_UKJ_skin_BB5


title: MG_UKJ_skin_C1T


title: MG_UKJ_skin_BB4


title: tumor_endometrial [JB5000E], Dataset A

description:
JB5000E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4530E], Dataset A

description:
GL4530E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1705E], Dataset A

description:
JB1705E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1394E], Dataset A

description:
JB1394E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3309V], Dataset A

description:
JB3309V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4912V], Dataset A

description:
JB4912V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4650V], Dataset A

description:
JB4650V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_BB1


title: tumor_ovarian [GL3632V], Dataset A

description:
GL3632V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2260E], Dataset A

description:
JB2260E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4561V], Dataset A

description:
JB4561V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB2737V], Dataset A

description:
JB2737V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1722E], Dataset A

description:
JB1722E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_B9T


title: tumor_ovarian [JB4900V], Dataset A

description:
JB4900V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4962V], Dataset A

description:
JB4962V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2620E], Dataset A

description:
JB2620E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_B8T


title: MG_UKJ_skin_BB2


title: MG_UKJ_skin_B4T


title: tumor_ovarian [JB4450V], Dataset A

description:
JB4450V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB3390E], Dataset A

description:
JB3390E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL3898E], Dataset A

description:
GL3898E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2651E], Dataset A

description:
JB2651E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB5223V], Dataset A

description:
JB5223V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL3597V], Dataset A

description:
GL3597V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4696V], Dataset A

description:
JB4696V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2446E], Dataset A

description:
JB2446E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3437V], Dataset A

description:
JB3437V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5221E], Dataset A

description:
JB5221E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1914E], Dataset A

description:
JB1914E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB4933E], Dataset A

description:
JB4933E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB3329E], Dataset A

description:
JB3329E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3063V], Dataset A

description:
JB3063V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1521E], Dataset A

description:
JB1521E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL3793V], Dataset A

description:
GL3793V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB5068V], Dataset A

description:
JB5068V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4952V], Dataset A

description:
JB4952V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_B3T


title: MG_UKJ_skin_B2T


title: MG_UKJ_skin_B1T


title: tumor_endometrial [GL4300E], Dataset A

description:
GL4300E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_B12T


title: MG_UKJ_skin_B14T


title: MG_UKJ_skin_AA8

value: young


title: MG_UKJ_skin_AA7


title: tumor_endometrial [GL3709E], Dataset A

description:
GL3709E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL5113V], Dataset A

description:
GL5113V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4345V], Dataset A

description:
JB4345V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4744V], Dataset A

description:
JB4744V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_AA6


title: tumor_endometrial [JB3012E], Dataset A

description:
JB3012E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4960V], Dataset A

description:
JB4960V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5240E], Dataset A

description:
JB5240E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2684E], Dataset A

description:
JB2684E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_AA4


title: tumor_ovarian [JB3820V], Dataset A

description:
JB3820V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_B13T


title: tumor_endometrial [JB2373E], Dataset A

description:
JB2373E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3669V], Dataset A

description:
JB3669V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4666E], Dataset A

description:
GL4666E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL3520V], Dataset A

description:
GL3520V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5142E], Dataset A

description:
JB5142E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_AA3


title: MG_UKJ_skin_AA2


title: tumor_endometrial [GL3934E], Dataset A

description:
GL3934E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB2025V], Dataset A

description:
JB2025V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3838V], Dataset A

description:
JB3838V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL3500V], Dataset A

description:
GL3500V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3457V], Dataset A

description:
JB3457V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4366E], Dataset A

description:
GL4366E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1437E], Dataset A

description:
JB1437E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB3020E], Dataset A

description:
JB3020E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1245E], Dataset A

description:
JB1245E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_AA1


title: MG_UKJ_skin_A9T


title: MG_UKJ_skin_A8T


title: tumor_ovarian [JB2299V], Dataset A

description:
JB2299V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_A7T


title: MG_UKJ_skin_A5T


title: MG_UKJ_skin_A6T


title: tumor_endometrial [GL4590E], Dataset A

description:
GL4590E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2471E], Dataset A

description:
JB2471E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_skin_A13T


title: tumor_endometrial [GL3529E], Dataset A

description:
GL3529E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL4226V], Dataset A

description:
GL4226V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL3623V], Dataset A

description:
GL3623V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_D7B

source_name: total RNA extracted from blood

value: blood


title: tumor_endometrial [JB2750E], Dataset A

description:
JB2750E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2907E], Dataset A

description:
JB2907E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2630E], Dataset A

description:
JB2630E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3434V], Dataset A

description:
JB3434V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_D2B


title: tumor_endometrial [JB1596E], Dataset A

description:
JB1596E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL4200V], Dataset A

description:
GL4200V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_D14B


title: tumor_ovarian [JB4077V], Dataset A

description:
JB4077V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB5150V], Dataset A

description:
JB5150V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4860V], Dataset A

description:
JB4860V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL3816E], Dataset A

description:
GL3816E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2091E], Dataset A

description:
JB2091E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_D13B


title: tumor_ovarian [JB5141V], Dataset A

description:
JB5141V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3441V], Dataset A

description:
JB3441V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2070E], Dataset A

description:
JB2070E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_D10B


title: tumor_ovarian [JB5234V], Dataset A

description:
JB5234V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_D11B


title: tumor_endometrial [JB1602E], Dataset A

description:
JB1602E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_D12B


title: MG_UKJ_blood_C8B


title: MG_UKJ_blood_C3B


title: MG_UKJ_blood_C6B


title: tumor_endometrial [JB2341E], Dataset A

description:
JB2341E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4419V], Dataset A

description:
JB4419V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB5153V], Dataset A

description:
JB5153V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4589V], Dataset A

description:
JB4589V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4282E], Dataset A

description:
GL4282E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB3197E], Dataset A

description:
JB3197E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5017E], Dataset A

description:
JB5017E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_C2B


title: tumor_ovarian [JB4889V], Dataset A

description:
JB4889V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB1654V], Dataset A

description:
JB1654V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL3686E], Dataset A

description:
GL3686E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4079V], Dataset A

description:
JB4079V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_C1B


title: tumor_endometrial [GL4064E], Dataset A

description:
GL4064E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_C13B


title: tumor_ovarian [GL4490V], Dataset A

description:
GL4490V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB5242V], Dataset A

description:
JB5242V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2557E], Dataset A

description:
JB2557E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4472E], Dataset A

description:
GL4472E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4388V], Dataset A

description:
JB4388V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_B9B


title: MG_UKJ_blood_C12B


title: MG_UKJ_blood_B8B


title: tumor_endometrial [JB1883E], Dataset A

description:
JB1883E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_B1B_1


title: MG_UKJ_blood_B4B


title: MG_UKJ_blood_B2B


title: MG_UKJ_blood_B3B


title: tumor_ovarian [JB2133V], Dataset A

description:
JB2133V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4196V], Dataset A

description:
JB4196V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB4618E], Dataset A

description:
JB4618E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_B14B


title: tumor_endometrial [JB2109E], Dataset A

description:
JB2109E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3663V], Dataset A

description:
JB3663V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4314V], Dataset A

description:
JB4314V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB1866E], Dataset A

description:
JB1866E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB3436E], Dataset A

description:
JB3436E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4684V], Dataset A

description:
JB4684V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_B13B


title: tumor_endometrial [GL3542E], Dataset A

description:
GL3542E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4254E], Dataset A

description:
GL4254E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2361E], Dataset A

description:
JB2361E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4304V], Dataset A

description:
JB4304V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4531V], Dataset A

description:
JB4531V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2962E], Dataset A

description:
JB2962E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB5019V], Dataset A

description:
JB5019V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_B12B


title: tumor_ovarian [JB4752V], Dataset A

description:
JB4752V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5227E], Dataset A

description:
JB5227E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_A9B


title: tumor_ovarian [JB4649V], Dataset A

description:
JB4649V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4431E], Dataset A

description:
GL4431E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4668E], Dataset A

description:
GL4668E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4548V], Dataset A

description:
JB4548V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_A8B


title: tumor_ovarian [JB4234V], Dataset A

description:
JB4234V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_A6B


title: tumor_endometrial [GL4415E], Dataset A

description:
GL4415E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_A13B


title: MG_UKJ_blood_A5B


title: tumor_ovarian [JB3025V], Dataset A

description:
JB3025V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL3599V], Dataset A

description:
GL3599V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5043E], Dataset A

description:
JB5043E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_A2B_3


title: tumor_endometrial [JB1995E], Dataset A

description:
JB1995E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL3694E], Dataset A

description:
GL3694E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4757V], Dataset A

description:
JB4757V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL4371V], Dataset A

description:
GL4371V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4674V], Dataset A

description:
JB4674V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4627E], Dataset A

description:
GL4627E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2024E], Dataset A

description:
JB2024E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5049E], Dataset A

description:
JB5049E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB4916E], Dataset A

description:
JB4916E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [GL3576V], Dataset A

description:
GL3576V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB5014V], Dataset A

description:
JB5014V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: MG_UKJ_blood_A7B


title: tumor_endometrial [JB3058E], Dataset A

description:
JB3058E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB3110E], Dataset A

description:
JB3110E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4715V], Dataset A

description:
JB4715V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4160V], Dataset A

description:
JB4160V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB3426E], Dataset A

description:
JB3426E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4998V], Dataset A

description:
JB4998V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB1535V], Dataset A

description:
JB1535V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4878V], Dataset A

description:
JB4878V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2665E], Dataset A

description:
JB2665E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL3736E], Dataset A

description:
GL3736E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB5096E], Dataset A

description:
JB5096E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2445E], Dataset A

description:
JB2445E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4060V], Dataset A

description:
JB4060V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB2466V], Dataset A

description:
JB2466V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4029V], Dataset A

description:
JB4029V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [GL4080E], Dataset A

description:
GL4080E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB2344E], Dataset A

description:
JB2344E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4743V], Dataset A

description:
JB4743V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4189V], Dataset A

description:
JB4189V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB3189E], Dataset A

description:
JB3189E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB3979V], Dataset A

description:
JB3979V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_endometrial [JB3067E], Dataset A

description:
JB3067E
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4676V], Dataset A

description:
JB4676V
microRNA expression of tumor tissue.
Total RNA or miRNA


title: tumor_ovarian [JB4833V], Dataset A

description:
JB4833V
microRNA expression of tumor tissue.
Total RNA or miRNA