title: Flat Cell Layer, biological rep1


title: Round Cell Layer, biological rep1

status: Public on Oct 05 2016

type: RNA

city: Boston

first: Shigeki

last: Nishimori

state: MA

address: 50 Blossom Street, Thier 1101

department: Medicine

country: USA

institute: Massachusetts General Hospital

description: Gene expression data from the round cell layer in the growth plate.

hyb_protocol: Following fragmentation, 15 μg of cRNA were hybridized on GeneChip Mouse Genome Array for 16 hr at 45 °C in Hybridization Oven. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.

scan_protocol: GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.

data_processing: The data were analyzed with Affymetrix Expression Console Software using MAS5 (Microarray Suite version 5.0) algorithm. We used Affymetrix default analysis settings and global scaling as normalization method.

label: biotin

molecule: total RNA

organism: Mus musculus

source_name: Newborn mouse, tibia growth plate, round cell layer

label_protocol: Biotinylated cRNA were prepared according to the Affymetrix One-Cycle Target Labeling protocol from 2.7 to 4.6 μg total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).

growth_protocol: The newborn pups were euthanized after the delivery. To obtain enough yield of total RNA, we used litters with 9 to 10 pups.

extract_protocol: Total RNA was extracted using RNeasy Mini kit (Qiagen) with on-column DNase I digestion according to the manufacturer's instructions.

treatment_protocol: The hind limbs were dissected and frozen immediately by Dryice in OCT compound media without fixation. From cryosections of the hind limbs on the glass slide, we manually dissected each layer of the growth plate under a dissecting microscope. We collected the pieces of sections in Qiagen Buffer RLT and stored at -80 °C prior to RNA extraction. To prepare one sample, we dissected 18 to 20 tibiae from the same litter.

tag: strain/background

value: Black Swiss

tag: genotype/variation

value: Wild type

tag: age

value: Newborn (P0)

tag: tissue

value: Growth plate in the proximal tibia

tag: growth plate layer

value: Round cell layer


title: COPD epithelium 24h post-smoke exposure, small airway-on-a-chip 1

status: Public on Sep 20 2016

first: Kambez

last: Hajipouran Benam

address: Center for Life Science Boston, 3 Blackfan Circle

institute: Wyss Insstitute, Harvard Medical School

description:
COPD_S1
Gene expression data from epithelial cells.

hyb_protocol: Following labeling, ssDNA was hybridized to the Human Gene 2.0 ST GeneChips® for 16 hr at 45C in an Affymetrix HybridizationOven 645. GeneChips® were washed and stained in the Affymetrix Fluidics Station 450 using the GeneChip® Hybridization, Wash, and Stain Kit (performed at Molecular Biology Core Facilities of Dana-Farber Cancer Institute at Harvard University (https://mbcf.dfci.harvard.edu)).

scan_protocol: The arrays were scanned on GeneChip Scanner 3000 7G (performed at Molecular Biology Core Facilities of Dana-Farber Cancer Institute at Harvard University (https://mbcf.dfci.harvard.edu)).

data_processing: The raw intensities of the CEL files were normalized with RMA (Affymetrix Expression Console). Unlabeled genes were removed and duplicates were averaged.

label: Biotin

organism: Homo sapiens

source_name: In vitro differentiated primary COPD human mucociliated epithelium, exposed to smoke

label_protocol: The targets were prepared using the Affymetrix WT Plus assay and labeled by terminal deoxynucleotidyl transferase (TdT) using the Affymetrix proprietary DNA Labeling Reagent (performed at Molecular Biology Core Facilities of Dana-Farber Cancer Institute at Harvard University (https://mbcf.dfci.harvard.edu)).

growth_protocol: Human bronchiolar epithelial cells isolated from healthy normal subjects or COPD patients were cultured in the microfluidic small airway-on-a-chip as described previously (Benam et al., Nat Methods. 13: 151-7; 2016). In brief, cells were maintained under submerged condition until full confluency, and then taken to air-liquid interface condition for the following 3-5 weeks.

extract_protocol: Cells were lysed in situ using RLT buffer and Qiagen RNeasy extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Epithelial cells in the airway microchannel of the small airway chips 24h post-smoke exposure or unchallenged (non-smoking chips) were used for RNA extraction.

tag: disease status

value: chronic obstructive pulmonary disease (COPD)

value: adult

value: well-differentiated lung airway epithelium

tag: treatment

value: whole cigarette smoke


title: COPD epithelium 24h post-smoke exposure, small airway-on-a-chip 3

description:
COPD_S3
Gene expression data from epithelial cells.


title: Hypertrophic Cell Layer, biological rep1

description: Gene expression data from the hypertrophic cell layer in the growth plate.

source_name: Newborn mouse, tibia growth plate, hypertrophic cell layer

value: Hypertrophic cell layer


title: COPD epithelium 24h post-smoke exposure, small airway-on-a-chip 4

description:
COPD_S4
Gene expression data from epithelial cells.


title: COPD epithelium unchallenged, small airway-on-a-chip 4

description:
COPD_NS4
Gene expression data from epithelial cells.

source_name: In vitro differentiated primary COPD human mucociliated epithelium, no smoke

value: no smoke


title: Normal epithelium 24h post-smoke exposure, small airway-on-a-chip 3

description:
Normal_S3
Gene expression data from epithelial cells.

source_name: In vitro differentiated primary normal human mucociliated epithelium, exposed to smoke

value: healthy


title: COPD epithelium unchallenged, small airway-on-a-chip 3

description:
COPD_NS3
Gene expression data from epithelial cells.


title: Normal epithelium unchallenged, small airway-on-a-chip 4

description:
Normal_NS4
Gene expression data from epithelial cells.

source_name: In vitro differentiated primary normal human mucociliated epithelium, no smoke


title: COPD epithelium 24h post-smoke exposure, small airway-on-a-chip 2

description:
COPD_S2
Gene expression data from epithelial cells.


title: COPD epithelium unchallenged, small airway-on-a-chip 2

description:
COPD_NS2
Gene expression data from epithelial cells.


title: Normal epithelium unchallenged, small airway-on-a-chip 2

description:
Normal_NS2
Gene expression data from epithelial cells.


title: Normal epithelium 24h post-smoke exposure, small airway-on-a-chip 2

description:
Normal_S2
Gene expression data from epithelial cells.


title: Normal epithelium 24h post-smoke exposure, small airway-on-a-chip 1

description:
Normal_S1
Gene expression data from epithelial cells.


title: AEC methylation data_afe7_439b

status: Public on Jan 06 2017

type: genomic

city: Chicago

first: Carole

last: Ober

state: IL

address: 920 E 58TH ST

department: Human Genetics

institute: The University of Chicago

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing: minfi protocol

label: Cy3 and Cy5

molecule: genomic DNA

source_name: airway epithelial cells

label_protocol: Standard Illumina Protocol

extract_protocol: AECs were harvested via bronchial brushing and DNA/RNA was extracted consecutively using the AllPrep kit from QIAgen

tag: cell type

value: airway epithelial cells

value: Asthma

tag: gender

value: Male

tag: ethnicity

value: AA

tag: ChIP

tag: well


title: Patient 5, CD56+ cells, before second dose of fingolimod [gene-level]

status: Public on May 20 2016

city: Rostock

first: Michael

last: Hecker

address: Gehlsheimer Str. 20

department: Department of Neurology

country: Germany

institute: University of Rostock

description: Gene expression data from a multiple sclerosis patient treated with fingolimod

hyb_protocol: Labeled single-stranded DNA in the sense orientation was hybridized for 16 hours at 45 °C on Affymetrix HTA 2.0 microarrays. The microarrays were washed and stained with a streptavidin-phycoerythrin conjugate in an Affymetrix Fluidics Station 450. Signal amplification with antibodies was applied following the instructions provided by Affymetrix.

scan_protocol: The microarrays were scanned with a GeneChip Scanner 3000 7G (Affymetrix).

data_processing: Data preprocessing of the raw microarray scans was performed using the Affymetrix GeneChip Command Console (AGCC) software version 4.0. The data were then processed using Expression Console version 1.3.1. The robust multi-array average (RMA) algorithm was applied with the default configuration, which includes a log2 data transformation and quantile normalization. In this step, the measured signal intensities of >6 million probes were summarized into gene level probe sets (n=70523) and exon level probe sets (n=914585). The Transcriptome Analysis Console (TAC) software version 1.0 was utilized to analyze the RNA expression dynamics.

source_name: Peripheral blood CD56+ cells

label_protocol: According to the Affymetrix Whole Transcript (WT) manual, cRNA was prepared from 70 ng total RNA. The cRNA was then used to generate single-stranded DNA, which was fragmented and biotinylated.

growth_protocol: Patient blood samples were taken immediately before the first dose of fingolimod as well as one day and three months post therapy initiation.

extract_protocol: Peripheral blood CD56+ cells were separated by magnetic-activated cell sorting using Whole Blood CD56 MicroBeads (Miltenyi Biotec) and total RNA was isolated using the mirVana isolation kit (Thermo Fisher Scientific) according to the manufacturers' protocols.

treatment_protocol: Patients were treated with fingolimod (Gilenya, Novartis) according to the approved label (0.5 mg orally once-daily) and the guidelines and recommendations of the German Society of Neurology.

tag: patient identifier

value: female

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

value: interferon-beta-1a intramuscular

tag: treatment gap in months

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up

tag: relapses during 4-year follow-up

tag: completed years of fingolimod therapy


title: Patient 5, CD56+ cells, after 3 months of fingolimod treatment [gene-level]

tag: gender


title: AEC methylation data_a7d1_4fec

tag: age

tag: cell type

tag: disease status

value: Control

value: Female

tag: ethnicity

tag: ChIP

tag: well


title: Normal epithelium unchallenged, small airway-on-a-chip 1

description:
Normal_NS1
Gene expression data from epithelial cells.

tag: tissue

tag: treatment


title: COPD epithelium unchallenged, small airway-on-a-chip 1

description:
COPD_NS1
Gene expression data from epithelial cells.


title: Patient 5, CD56+ cells, before first dose of fingolimod [gene-level]

tag: patient identifier

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: treatment gap in months

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: edss after 3 years


title: Normal epithelium unchallenged, small airway-on-a-chip 3

description:
Normal_NS3
Gene expression data from epithelial cells.

tag: age


title: Hypertrophic Cell Layer, biological rep2

tag: strain/background

value: Black Swiss

tag: genotype/variation

value: Wild type

value: Newborn (P0)

value: Growth plate in the proximal tibia

tag: growth plate layer


title: AEC methylation data_690e_45c3

tag: cell type

tag: disease status

tag: gender

tag: ethnicity

tag: ChIP


title: AEC methylation data_ff13_4c84

tag: well


title: Patient 5, CD19+ cells, after 3 months of fingolimod treatment [gene-level]

source_name: Peripheral blood CD19+ cells

extract_protocol: Peripheral blood CD19+ cells were separated by magnetic-activated cell sorting using Whole Blood CD19 MicroBeads (Miltenyi Biotec) and total RNA was isolated using the mirVana isolation kit (Thermo Fisher Scientific) according to the manufacturers' protocols.

tag: patient identifier

tag: age in years at baseline

tag: disease duration in years at baseline

tag: edss after 4 years

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up

tag: relapses during 4-year follow-up

tag: completed years of fingolimod therapy


title: Patient 2, CD56+ cells, after 3 months of fingolimod treatment [gene-level]

tag: previous treatment

value: interferon-beta-1b subcutaneous

tag: treatment gap in months

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: edss after 3 years


title: Patient 7, CD19+ cells, after 3 months of fingolimod treatment [gene-level]

tag: gender


title: Patient 2, CD19+ cells, before first dose of fingolimod [gene-level]

tag: patient identifier


title: AEC methylation data_15e4_4e17

tag: age

tag: cell type

tag: disease status

tag: ethnicity

tag: ChIP

tag: well


title: Patient 5, CD14+ cells, after 3 months of fingolimod treatment [gene-level]

source_name: Peripheral blood CD14+ cells

label_protocol: According to the Affymetrix Whole Transcript (WT) manual, cRNA was prepared from 200 ng total RNA. The cRNA was then used to generate single-stranded DNA, which was fragmented and biotinylated.

extract_protocol: Peripheral blood CD14+ cells were separated by magnetic-activated cell sorting using Whole Blood CD14 MicroBeads (Miltenyi Biotec) and total RNA was isolated using the mirVana isolation kit (Thermo Fisher Scientific) according to the manufacturers' protocols.

tag: age in years at baseline

tag: disease duration in years at baseline

tag: edss after 4 years

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up


title: Patient 7, CD19+ cells, before first dose of fingolimod [gene-level]

tag: previous treatment

tag: treatment gap in months

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: relapses during 4-year follow-up

tag: completed years of fingolimod therapy


title: Patient 7, CD14+ cells, before second dose of fingolimod [gene-level]

tag: patient identifier

tag: gender

tag: edss after 3 years


title: Patient 7, CD19+ cells, before second dose of fingolimod [gene-level]

tag: age in years at baseline


title: Patient 5, CD19+ cells, before second dose of fingolimod [gene-level]

tag: disease duration in years at baseline


title: Patient 2, CD19+ cells, before second dose of fingolimod [gene-level]

tag: edss after 4 years


title: Patient 5, CD14+ cells, before first dose of fingolimod [gene-level]

tag: relapses during the year prior to fingolimod


title: Patient 5, CD14+ cells, before second dose of fingolimod [gene-level]

tag: relapses during 1-year follow-up


title: Patient 2, CD56+ cells, before first dose of fingolimod [gene-level]

tag: relapses during 2-year follow-up


title: Patient 7, CD14+ cells, before first dose of fingolimod [gene-level]

tag: relapses during 3-year follow-up


title: Patient 2, CD56+ cells, before second dose of fingolimod [gene-level]

tag: previous treatment


title: Patient 7, CD14+ cells, after 3 months of fingolimod treatment [gene-level]

tag: treatment gap in months


title: Patient 2, CD14+ cells, after 3 months of fingolimod treatment [gene-level]

tag: edss at baseline


title: Patient 2, CD19+ cells, after 3 months of fingolimod treatment [gene-level]

tag: edss after 1 year


title: Patient 5, CD19+ cells, before first dose of fingolimod [gene-level]

tag: edss after 2 years


title: Patient 2, CD14+ cells, before first dose of fingolimod [gene-level]

tag: relapses during 4-year follow-up


title: EU937001_mucin_30h_3_RNA

status: Public on May 19 2016

city: Richland

first: Natalie

last: Heller

address: 902 Battelle Blvd.

institute: PNNL

hyb_protocol: Hybridization was performed according to Agilent One-Color Microarray-Based Gene Expression Analysis Protocol (Agilent Technology). The labeled cRNAs were purified by RNeasy Mini Kit (Qiagen). The concentration and specific activity of the labeled cRNAs (pmol Cy3/μg cRNA) were measured by NanoDrop ND-1000. 1 μg of each labeled cRNA was fragmented by adding 11 μl 10 x Blocking Agent and 2.2 μl of 25xFragmentation Buffer, then heated at 60 °C for 30 min, and finally 55 μl 2 x GE Hybridization buffer was added to dilute the labeled cRNA. 100μl of hybridization solution was dispensed into the gasket slide and assembled to the gene expression microarray slide. The slides were incubated for 17 hours at 65°C in an Agilent Hybridization Oven.

scan_protocol: The hybridized arrays were washed, fixed and scanned using the Agilent DNA Microarray Scanner (part number G2505C).

data_processing: Scanned images were analyzed using Agilent Feature Extraction Software (v11.0.1.1). The limma package for R (available on Bioconductor) was used to perform background correction, quantile normalization (normalizeBetweenArrays), and summarization (avereps) to derive a single normalized intensity value (log2) per probe. Outlier samples were detected using PCA and by visual inspection of heatmaps, and all data was re-processed after removing outlier samples. All data processing for each of the biological replicates was performed independently of the other.

source_name: U937-VP30 cells, mucin-inoculated, 30h

label_protocol: Total RNA was labeled according to Agilent's Quick Amp Labeling protocol as part of the Agilent One-Color Microarray-Based Gene Expression Analysis Protocol (Agilent Technology). Total RNA from each sample was linearly amplified and labeled with Cy3-UTP.

growth_protocol: U937-VP30 cells are grown on 10% fetal bovine serum (FBS) in RPMI 1640 medium. Cells were at passage 8 when infected. Virus growth medium after infection was the same; 10% FBS-RPMI 1640.

extract_protocol: Extract was 1mL of Trizol per well.

treatment_protocol: Cells were infected with a multiplicity of infection of 1.0.

tag: cell line

tag: cell type

value: U937 monocyte-like cells expressing the Ebola VP30 protein

tag: treatment

value: Zaire Ebola virus delta-mucin in the delta-VP30 background

tag: time (post-infection)

tag: biological replicate


title: EU937001_mucin_30h_1_RNA


title: EU937001_mucin_30h_4_RNA


title: EU937001_wild_30h_5_RNA

source_name: U937-VP30 cells, wild-inoculated, 30h

value: Zaire Ebola virus wild-type in the delta-VP30 background


title: EU937001_mucin_30h_2_RNA


title: EU937001_wild_30h_4_RNA


title: EU937001_wild_30h_1_RNA


title: EU937001_mock_30h_5_RNA

source_name: U937-VP30 cells, mock-inoculated, 30h

value: mock inoculation


title: Patient 2, CD14+ cells, before second dose of fingolimod [gene-level]

tag: patient identifier

tag: gender

tag: age in years at baseline

tag: disease duration in years at baseline

tag: edss after 3 years

tag: completed years of fingolimod therapy


title: EU937001_mock_30h_4_RNA


title: EU937001_wild_30h_3_RNA


title: EU937001_mock_30h_2_RNA


title: EU937001_mucin_18h_5_RNA

source_name: U937-VP30 cells, mucin-inoculated, 18h


title: EU937001_mucin_18h_3_RNA


title: Patient 5, CD56+ cells, before first dose of fingolimod [exon-level]

tag: previous treatment

tag: edss after 4 years

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up


title: EU937001_mucin_18h_1_RNA

tag: cell line


title: Patient 2, CD56+ cells, before first dose of fingolimod [exon-level]

tag: treatment gap in months

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: relapses during 4-year follow-up


title: Patient 7, CD19+ cells, after 3 months of fingolimod treatment [exon-level]

tag: patient identifier

tag: gender


title: EU937001_mock_30h_1_RNA

tag: cell type

tag: treatment

tag: time (post-infection)

tag: biological replicate


title: Patient 5, CD56+ cells, after 3 months of fingolimod treatment [exon-level]

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: edss after 3 years

tag: edss after 4 years

tag: completed years of fingolimod therapy


title: EU937001_wild_18h_5_RNA

source_name: U937-VP30 cells, wild-inoculated, 18h

tag: cell line


title: Patient 7, CD19+ cells, before second dose of fingolimod [exon-level]

tag: treatment gap in months

tag: edss at baseline

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up


title: Patient 2, CD56+ cells, after 3 months of fingolimod treatment [exon-level]

tag: patient identifier

tag: gender

tag: edss after 1 year

tag: edss after 2 years

tag: relapses during 4-year follow-up


title: EU937001_mock_30h_3_RNA

tag: cell type

tag: treatment

tag: time (post-infection)

tag: biological replicate


title: Patient 2, CD56+ cells, before second dose of fingolimod [exon-level]

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: edss after 3 years

tag: edss after 4 years

tag: completed years of fingolimod therapy


title: Patient 2, CD19+ cells, before second dose of fingolimod [exon-level]

tag: treatment gap in months

tag: edss at baseline

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up


title: Patient 5, CD56+ cells, before second dose of fingolimod [exon-level]

tag: patient identifier

tag: gender

tag: edss after 1 year

tag: edss after 2 years

tag: relapses during 3-year follow-up


title: EU937001_mock_18h_5_RNA

source_name: U937-VP30 cells, mock-inoculated, 18h

tag: cell line

tag: cell type

tag: treatment

tag: time (post-infection)

tag: biological replicate


title: Patient 2, CD19+ cells, after 3 months of fingolimod treatment [exon-level]

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during 4-year follow-up


title: EU937001_wild_18h_1_RNA


title: Patient 2, CD19+ cells, before first dose of fingolimod [exon-level]

tag: treatment gap in months

tag: edss at baseline

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: completed years of fingolimod therapy


title: EU937001_mock_18h_2_RNA

tag: cell line


title: EU937001_mock_18h_3_RNA

tag: cell type


title: EU937001_mucin_8h_3_RNA

source_name: U937-VP30 cells, mucin-inoculated, 8h

tag: treatment


title: EU937001_wild_18h_3_RNA

tag: time (post-infection)


title: EU937001_mucin_8h_4_RNA

tag: biological replicate


title: Patient 2, CD14+ cells, after 3 months of fingolimod treatment [exon-level]

tag: patient identifier

tag: gender

tag: age in years at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: relapses during 3-year follow-up


title: EU937001_mucin_8h_2_RNA


title: EU937001_mucin_8h_1_RNA


title: EU937001_wild_18h_4_RNA


title: Patient 7, CD14+ cells, after 3 months of fingolimod treatment [exon-level]

tag: disease duration in years at baseline

tag: previous treatment

tag: treatment gap in months

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during 4-year follow-up


title: EU937001_wild_8h_3_RNA

source_name: U937-VP30 cells, wild-inoculated, 8h

tag: cell line


title: EU937001_wild_8h_2_RNA

tag: cell type


title: EU937001_mucin_8h_5_RNA

tag: treatment


title: Patient 5, CD19+ cells, before first dose of fingolimod [exon-level]

tag: edss at baseline

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: completed years of fingolimod therapy


title: Patient 7, CD14+ cells, before first dose of fingolimod [exon-level]

tag: patient identifier

tag: gender

tag: age in years at baseline

tag: edss after 1 year


title: Patient 5, CD14+ cells, after 3 months of fingolimod treatment [exon-level]

tag: disease duration in years at baseline

tag: previous treatment

tag: edss after 2 years

tag: relapses during 3-year follow-up


title: Patient 5, CD19+ cells, after 3 months of fingolimod treatment [exon-level]

tag: treatment gap in months

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during 4-year follow-up


title: Patient 7, CD14+ cells, before second dose of fingolimod [exon-level]

tag: edss at baseline


title: EU937001_mock_8h_3_RNA

source_name: U937-VP30 cells, mock-inoculated, 8h

tag: cell line

tag: cell type

tag: treatment

tag: time (post-infection)

tag: biological replicate


title: EU937001_mock_8h_5_RNA


title: Patient 2, CD14+ cells, before first dose of fingolimod [exon-level]

tag: patient identifier

tag: gender

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: completed years of fingolimod therapy


title: Patient 2, CD14+ cells, before second dose of fingolimod [exon-level]

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: edss after 1 year

tag: edss after 2 years

tag: relapses during 3-year follow-up


title: EU937001_wild_8h_1_RNA

tag: cell line


title: Patient 5, CD14+ cells, before first dose of fingolimod [exon-level]

tag: treatment gap in months

tag: edss at baseline

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during 4-year follow-up


title: EU937001_mock_8h_2_RNA

tag: cell type

tag: treatment

tag: time (post-infection)

tag: biological replicate


title: EU937001_wild_18h_2_RNA


title: Patient 7, CD19+ cells, before first dose of fingolimod [exon-level]

tag: patient identifier

tag: gender

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: completed years of fingolimod therapy


title: Patient 5, CD19+ cells, before second dose of fingolimod [exon-level]

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: edss after 1 year

tag: edss after 2 years

tag: relapses during 3-year follow-up


title: EU937001_mock_18h_1_RNA

tag: cell line


title: EU937001_mucin_0h_4_RNA

source_name: U937-VP30 cells, mucin-inoculated, 0h

tag: cell type


title: EU937001_wild_0h_5_RNA

source_name: U937-VP30 cells, wild-inoculated, 0h

tag: treatment


title: EU937001_mock_18h_4_RNA

tag: time (post-infection)


title: EU937001_mucin_0h_1_RNA

tag: biological replicate


title: EU937001_mock_8h_1_RNA


title: EU937001_mucin_0h_5_RNA


title: EU937001_wild_0h_4_RNA


title: EU937001_mucin_0h_2_RNA


title: EU937001_mock_0h_3_RNA

source_name: U937-VP30 cells, mock-inoculated, 0h


title: EU937001_wild_0h_3_RNA


title: EU937001_wild_0h_1_RNA


title: EU937001_mock_0h_5_RNA


title: EU937001_mock_0h_4_RNA


title: EU937001_mucin_30h_3_microRNA

status: Public on May 06 2016

description: microRNA


title: EU937001_mock_0h_1_RNA


title: EU937001_mucin_30h_2_microRNA

description: microRNA


title: EU937001_mock_0h_2_RNA


title: EU937001_mucin_30h_1_microRNA

description: microRNA


title: EU937001_mock_30h_4_microRNA

description: microRNA


title: EU937001_wild_0h_2_RNA


title: EU937001_wild_30h_4_microRNA

description: microRNA


title: EU937001_mock_30h_3_microRNA

description: microRNA


title: EU937001_wild_30h_1_microRNA

description: microRNA


title: EU937001_wild_30h_2_microRNA

description: microRNA


title: EU937001_mock_30h_5_microRNA

description: microRNA


title: EU937001_wild_30h_3_microRNA

description: microRNA


title: EU937001_mock_30h_1_microRNA

description: microRNA


title: EU937001_mock_30h_2_microRNA

description: microRNA


title: Patient 5, CD14+ cells, before second dose of fingolimod [exon-level]

tag: patient identifier

tag: treatment gap in months

tag: edss at baseline

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during 4-year follow-up


title: EU937001_wild_18h_3_microRNA

description: microRNA


title: EU937001_wild_18h_4_microRNA

description: microRNA


title: EU937001_mucin_18h_5_microRNA

description: microRNA


title: EU937001_wild_18h_2_microRNA

description: microRNA


title: EU937001_mucin_18h_3_microRNA

description: microRNA


title: EU937001_mucin_18h_1_microRNA

description: microRNA


title: EU937001_wild_18h_1_microRNA

description: microRNA


title: EU937001_mock_18h_5_microRNA

description: microRNA


title: EU937001_mock_18h_4_microRNA

description: microRNA


title: EU937001_mock_18h_1_microRNA

description: microRNA


title: EU937001_mucin_8h_4_microRNA

description: microRNA


title: EU937001_mucin_8h_3_microRNA

description: microRNA


title: EU937001_mock_18h_3_microRNA

description: microRNA


title: EU937001_mucin_8h_5_microRNA

description: microRNA


title: EU937001_mock_8h_4_microRNA

description: microRNA


title: EU937001_mucin_8h_2_microRNA

description: microRNA


title: EU937001_wild_8h_1_microRNA

description: microRNA


title: EU937001_wild_8h_2_microRNA

description: microRNA


title: EU937001_wild_8h_3_microRNA

description: microRNA


title: EU937001_mucin_8h_1_microRNA

description: microRNA


title: EU937001_mock_8h_5_microRNA

description: microRNA


title: EU937001_mock_8h_2_microRNA

description: microRNA


title: EU937001_mock_8h_1_microRNA

description: microRNA


title: EU937001_wild_8h_4_RNA


title: EU937001_mock_8h_3_microRNA

description: microRNA


title: Patient 7, CD4+ cells, after 3 months of fingolimod treatment [gene-level]

status: Public on Sep 19 2015

source_name: Peripheral blood CD4+ cells

extract_protocol: Peripheral blood CD4+ cells were separated by magnetic-activated cell sorting using Whole Blood CD4 MicroBeads (Miltenyi Biotec) and total RNA was isolated using the mirVana isolation kit (Thermo Fisher Scientific) according to the manufacturers' protocols.

tag: gender

tag: age in years at baseline

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: completed years of fingolimod therapy


title: Patient 7, CD8+ cells, after 3 months of fingolimod treatment [gene-level]

source_name: Peripheral blood CD8+ cells

extract_protocol: Peripheral blood CD8+ cells were separated by magnetic-activated cell sorting using Whole Blood CD8 MicroBeads (Miltenyi Biotec) and total RNA was isolated using the mirVana isolation kit (Thermo Fisher Scientific) according to the manufacturers' protocols.

tag: disease duration in years at baseline

tag: previous treatment

tag: edss after 1 year

tag: edss after 2 years

tag: relapses during 3-year follow-up


title: Patient 4, CD8+ cells, before second dose of fingolimod [gene-level]

tag: patient identifier


title: Patient 7, CD8+ cells, before second dose of fingolimod [gene-level]

tag: treatment gap in months


title: Patient 5, CD4+ cells, before first dose of fingolimod [gene-level]

tag: edss at baseline


title: EU937001_mock_18h_2_microRNA

description: microRNA

tag: cell line

tag: cell type

tag: treatment

tag: time (post-infection)

tag: biological replicate


title: Patient 4, CD8+ cells, before first dose of fingolimod [gene-level]

tag: gender

tag: age in years at baseline

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during the year prior to fingolimod

tag: relapses during 4-year follow-up


title: Patient 7, CD4+ cells, before second dose of fingolimod [gene-level]

tag: disease duration in years at baseline

tag: previous treatment

tag: edss after 1 year

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: completed years of fingolimod therapy


title: Patient 7, CD8+ cells, before first dose of fingolimod [gene-level]

tag: patient identifier

tag: treatment gap in months

tag: edss at baseline

tag: edss after 2 years

tag: relapses during 3-year follow-up


title: Patient 4, CD8+ cells, after 3 months of fingolimod treatment [gene-level]

tag: gender


title: Patient 5, CD4+ cells, after 3 months of fingolimod treatment [gene-level]

tag: age in years at baseline


title: Patient 2, CD4+ cells, before first dose of fingolimod [gene-level]

tag: edss after 3 years


title: Patient 2, CD4+ cells, before second dose of fingolimod [gene-level]

tag: edss after 4 years


title: Patient 5, CD4+ cells, before second dose of fingolimod [gene-level]

tag: relapses during the year prior to fingolimod


title: Patient 2, CD4+ cells, after 3 months of fingolimod treatment [gene-level]

tag: relapses during 4-year follow-up


title: Patient 7, CD4+ cells, before first dose of fingolimod [gene-level]

tag: disease duration in years at baseline


title: EU937001_mock_8h_4_RNA

tag: cell line

tag: cell type

tag: treatment

tag: time (post-infection)

tag: biological replicate


title: GM-CSF derived LPS_stimulated_dendritic_cell_2

status: Public on Sep 01 2015

city: London

first: Julie

last: Helft

address: 44 Lincoln's Inn Fields

department: London Research Institute

country: United Kingdom

institute: Cancer Research UK

hyb_protocol: Following fragmentation, 10ug of cRNA were hybridised for 16hrs at 45c on Genechip Mouse Gene 1.0 arrays. Genechips were washed and stained in the Affymetrix Fludics station 450.

scan_protocol: Genechips were scanned using the Affymetrix Genechip Scanner 3000G

data_processing: Data were analyzed using Bioconductor 2.13 running on R 3.0.2. Probeset expression measures were calculated using the Affymetrix package’s Robust Multichip Average (RMA) default method.

source_name: GM-CSF bone marrow culture

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)

growth_protocol: Bone marrow cells from tibia and femur of C57B/6 mice were culture in single cell suspension with 20ng/ml of recombinant GM-CSF for 6 days

extract_protocol: RLT buffer (+beta-ME) extraction of total RNA was performed and purified further with the Rneasy kit (Qiagen) according to the manufacturers instructions

treatment_protocol: GM-DC-US and GM-MF-US were left unstimulated and GM-DC-LPS and GM-MF-LPS were stimulated for 4 hours with 10ng/ml of LPS.

value: dendritic

value: LPS stimulated


title: GM-CSF derived LPS_stimulated_dendritic_cell_3


title: GM-CSF derived LPS_stimulated_macrophage_2

value: macrophage


title: GM-CSF derived unstimulated_dendritic_cell_3

value: unstimulated


title: GM-CSF derived LPS_stimulated_macrophage_3


title: GM-CSF derived LPS_stimulated_dendritic_cell_1


title: GM-CSF derived unstimulated_dendritic_cell_2


title: GM-CSF derived unstimulated_macrophage_3


title: GM-CSF derived unstimulated_macrophage_2


title: GM-CSF derived unstimulated_dendritic_cell_1


title: GM-CSF derived LPS_stimulated_macrophage_1


title: 101263_peripheral_CD14

status: Public on Nov 24 2014

city: Winston-Salem

first: Yongmei

last: Liu

state: NC

address: Medical Center Blvd.

institute: Wake Forest School of Medicine

description: human peripheral CD14+ cells

hyb_protocol: 700 ng of biotinylated cRNA was hybridized to a BeadChip at 580C for 16-17 hours.

scan_protocol: Illumina Bead Array Reader

data_processing:
Data corrected for local background were obtained from Illumina’s proprietary software GenomeStudio. QC analyses and bead type summarization (average bead signal for each type after outlier removal) were performed using the beadarray package (25). Detection P-values were computed using the negative controls on the array. The neqc function of the limma (26) package was used to perform a normal-exponential convolution model analysis to estimate non-negative signal, quantile normalization using all probes (gene and control, detected and not detected) and samples, addition of a recommended (small) offset, log2 transformation, and elimination of control probe data from the normalized expression matrix.
sample data table cotains quantile normalized values - neqc function of the limma package was used to perform a normal-exponential convolution model analysis to estimate the quantile normalization using all probes/samples

source_name: CD14+ cell

label_protocol: The Illumina TotalPrep-96 RNA Amplification Kit (Ambion/Applied Biosystems, DaeMStadt, Germany) was used for reverse transcription, and amplification with 500 ng of input total RNA (at 11ul).

growth_protocol: Not applicable

extract_protocol: Blood was initially collected in sodium heparin-containing Vacutainer CPTTM cell separation tubes (Becton Dickinson, Rutherford, NJ) to separate peripheral blood mononuclear cells from other elements within 2 hours from blood draw. Subsequently, monocytes were isolated with the anti-CD14 coated magnetic beads, respectively, using AutoMACs automated magnetic separation unit (Miltenyi Biotec, Bergisch Gladbach, Germany).  DNA and RNA were isolated from samples simultaneously using the AllPrep DNA/RNA Mini Kit (Qiagen, Inc., Hilden, Germany).

treatment_protocol: Not applicable

tag: ChIP

tag: well

value: B

tag: age

tag: racegendersite

tag: bcell

tag: tcell

tag: nkcell

tag: neutro

tag: plaque

tag: cac


title: EU937001_wild_18h_5_microRNA

description: microRNA


title: 101264_peripheral_CD14

description: human peripheral CD14+ cells

value: J


title: GM-CSF derived unstimulated_macrophage_1


title: 101262_peripheral_CD14

description: human peripheral CD14+ cells


title: 101257_peripheral_CD14

description: human peripheral CD14+ cells

value: G


title: 101255_peripheral_CD14

description: human peripheral CD14+ cells

value: H


title: 101258_peripheral_CD14

description: human peripheral CD14+ cells

value: C


title: 101253_peripheral_CD14

description: human peripheral CD14+ cells

value: D


title: 101261_peripheral_CD14

description: human peripheral CD14+ cells

value: K


title: 101250_peripheral_CD14

description: human peripheral CD14+ cells

value: L


title: 101251_peripheral_CD14

description: human peripheral CD14+ cells


title: 101256_peripheral_CD14

description: human peripheral CD14+ cells


title: 101249_peripheral_CD14

description: human peripheral CD14+ cells


title: 101248_peripheral_CD14

description: human peripheral CD14+ cells


title: 101260_peripheral_CD14

description: human peripheral CD14+ cells

value: F


title: 101254_peripheral_CD14

description: human peripheral CD14+ cells

value: E


title: 101252_peripheral_CD14

description: human peripheral CD14+ cells


title: 101247_peripheral_CD14

description: human peripheral CD14+ cells


title: 101243_peripheral_CD14

description: human peripheral CD14+ cells


title: 101244_peripheral_CD14

description: human peripheral CD14+ cells


title: Patient 4, CD8+ cells, before first dose of fingolimod [exon-level]

tag: patient identifier

tag: gender

value: female

tag: age in years at baseline

tag: previous treatment

value: interferon-beta-1a intramuscular

tag: treatment gap in months

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during the year prior to fingolimod

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up

tag: relapses during 4-year follow-up

tag: completed years of fingolimod therapy


title: Patient 7, CD8+ cells, before first dose of fingolimod [exon-level]

tag: disease duration in years at baseline

value: interferon-beta-1b subcutaneous


title: 101245_peripheral_CD14

description: human peripheral CD14+ cells

tag: ChIP

tag: well

tag: age

tag: racegendersite

tag: bcell

tag: tcell

tag: nkcell

tag: neutro

tag: plaque

tag: cac


title: Patient 7, CD8+ cells, before second dose of fingolimod [exon-level]

tag: patient identifier

tag: gender

tag: age in years at baseline

tag: previous treatment

tag: treatment gap in months

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during the year prior to fingolimod


title: 101239_peripheral_CD14

description: human peripheral CD14+ cells

tag: ChIP

tag: well

tag: age

tag: racegendersite

tag: bcell


title: 101242_peripheral_CD14

description: human peripheral CD14+ cells

tag: tcell

tag: nkcell

tag: neutro

tag: plaque

tag: cac


title: 101246_peripheral_CD14

description: human peripheral CD14+ cells


title: Patient 5, CD4+ cells, before second dose of fingolimod [exon-level]

tag: patient identifier

tag: gender

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: treatment gap in months

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up

tag: relapses during 4-year follow-up

tag: completed years of fingolimod therapy


title: Patient 7, CD4+ cells, before second dose of fingolimod [exon-level]

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during the year prior to fingolimod


title: 101238_peripheral_CD14

description: human peripheral CD14+ cells

tag: ChIP

tag: well

tag: age

tag: racegendersite

tag: bcell

tag: tcell

tag: nkcell

tag: neutro

tag: plaque

tag: cac


title: 101235_peripheral_CD14

description: human peripheral CD14+ cells


title: 101234_peripheral_CD14

description: human peripheral CD14+ cells


title: 101241_peripheral_CD14

description: human peripheral CD14+ cells


title: 101240_peripheral_CD14

description: human peripheral CD14+ cells

value: A


title: 101259_peripheral_CD14

description: human peripheral CD14+ cells


title: Patient 7, CD8+ cells, after 3 months of fingolimod treatment [exon-level]

tag: patient identifier

tag: gender

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: treatment gap in months

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up

tag: relapses during 4-year follow-up

tag: completed years of fingolimod therapy


title: Patient 4, CD8+ cells, before second dose of fingolimod [exon-level]

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during the year prior to fingolimod


title: Patient 5, CD4+ cells, before first dose of fingolimod [exon-level]

tag: patient identifier


title: 101236_peripheral_CD14

description: human peripheral CD14+ cells

tag: ChIP

tag: well

tag: age

tag: racegendersite

tag: bcell

tag: tcell

tag: nkcell

tag: neutro

tag: plaque

tag: cac


title: Patient 2, CD4+ cells, before first dose of fingolimod [exon-level]

tag: gender

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: treatment gap in months

tag: edss at baseline

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up

tag: relapses during 4-year follow-up

tag: completed years of fingolimod therapy


title: Patient 2, CD4+ cells, after 3 months of fingolimod treatment [exon-level]

tag: patient identifier

tag: edss after 1 year

tag: edss after 2 years

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during the year prior to fingolimod


title: Patient 7, CD4+ cells, before first dose of fingolimod [exon-level]

tag: gender


title: Patient 4, CD8+ cells, after 3 months of fingolimod treatment [exon-level]

tag: age in years at baseline


title: Patient 2, CD4+ cells, before second dose of fingolimod [exon-level]

tag: disease duration in years at baseline


title: 101229_peripheral_CD14

description: human peripheral CD14+ cells

tag: ChIP

tag: well

tag: age

tag: racegendersite

tag: bcell

tag: tcell

tag: nkcell

tag: neutro

tag: plaque

tag: cac


title: 101223_peripheral_CD14

description: human peripheral CD14+ cells


title: 101226_peripheral_CD14

description: human peripheral CD14+ cells


title: 101221_peripheral_CD14

description: human peripheral CD14+ cells


title: 101217_peripheral_CD14

description: human peripheral CD14+ cells


title: 101216_peripheral_CD14

description: human peripheral CD14+ cells


title: 101208_peripheral_CD14

description: human peripheral CD14+ cells

value: I


title: 101211_peripheral_CD14

description: human peripheral CD14+ cells


title: 101224_peripheral_CD14

description: human peripheral CD14+ cells


title: 101210_peripheral_CD14

description: human peripheral CD14+ cells


title: 101220_peripheral_CD14

description: human peripheral CD14+ cells


title: 101213_peripheral_CD14

description: human peripheral CD14+ cells


title: 101209_peripheral_CD14

description: human peripheral CD14+ cells


title: 101207_peripheral_CD14

description: human peripheral CD14+ cells


title: 101225_peripheral_CD14

description: human peripheral CD14+ cells


title: 101218_peripheral_CD14

description: human peripheral CD14+ cells


title: 101219_peripheral_CD14

description: human peripheral CD14+ cells


title: 101212_peripheral_CD14

description: human peripheral CD14+ cells


title: 101214_peripheral_CD14

description: human peripheral CD14+ cells


title: 101215_peripheral_CD14

description: human peripheral CD14+ cells


title: 101206_peripheral_CD14

description: human peripheral CD14+ cells


title: 101204_peripheral_CD14

description: human peripheral CD14+ cells


title: Patient 5, CD4+ cells, after 3 months of fingolimod treatment [exon-level]

tag: patient identifier

tag: previous treatment

tag: treatment gap in months

tag: edss at baseline

tag: edss after 1 year

tag: edss after 2 years

tag: relapses during 1-year follow-up

tag: relapses during 2-year follow-up

tag: relapses during 3-year follow-up

tag: relapses during 4-year follow-up

tag: completed years of fingolimod therapy


title: 101205_peripheral_CD14

description: human peripheral CD14+ cells

tag: ChIP

tag: well

tag: age

tag: racegendersite

tag: bcell


title: 101203_peripheral_CD14

description: human peripheral CD14+ cells

tag: tcell

tag: nkcell

tag: neutro

tag: plaque

tag: cac


title: 101201_peripheral_CD14

description: human peripheral CD14+ cells


title: 101202_peripheral_CD14

description: human peripheral CD14+ cells


title: 101200_peripheral_CD14

description: human peripheral CD14+ cells


title: 101199_peripheral_CD14

description: human peripheral CD14+ cells


title: 101198_peripheral_CD14

description: human peripheral CD14+ cells


title: 101196_peripheral_CD14

description: human peripheral CD14+ cells


title: 101197_peripheral_CD14

description: human peripheral CD14+ cells


title: Patient 7, CD4+ cells, after 3 months of fingolimod treatment [exon-level]

tag: patient identifier

tag: gender

tag: age in years at baseline

tag: disease duration in years at baseline

tag: previous treatment

tag: treatment gap in months

tag: edss at baseline

tag: edss after 1 year

tag: edss after 3 years

tag: edss after 4 years

tag: relapses during the year prior to fingolimod


title: 101194_peripheral_CD14

description: human peripheral CD14+ cells

tag: ChIP

tag: well

tag: age

tag: racegendersite

tag: bcell


title: 101189_peripheral_CD14

description: human peripheral CD14+ cells

tag: tcell

tag: nkcell

tag: neutro

tag: plaque

tag: cac


title: 101195_peripheral_CD14

description: human peripheral CD14+ cells


title: 101192_peripheral_CD14

description: human peripheral CD14+ cells


title: 101193_peripheral_CD14

description: human peripheral CD14+ cells


title: 101188_peripheral_CD14

description: human peripheral CD14+ cells


title: 101187_peripheral_CD14

description: human peripheral CD14+ cells


title: 101183_peripheral_CD14

description: human peripheral CD14+ cells


title: 101191_peripheral_CD14

description: human peripheral CD14+ cells


title: 101227_peripheral_CD14

description: human peripheral CD14+ cells


title: 101185_peripheral_CD14

description: human peripheral CD14+ cells


title: 101231_peripheral_CD14

description: human peripheral CD14+ cells


title: 101179_peripheral_CD14

description: human peripheral CD14+ cells


title: 101233_peripheral_CD14

description: human peripheral CD14+ cells


title: 101190_peripheral_CD14

description: human peripheral CD14+ cells


title: 101232_peripheral_CD14

description: human peripheral CD14+ cells


title: 101178_peripheral_CD14

description: human peripheral CD14+ cells


title: 101180_peripheral_CD14

description: human peripheral CD14+ cells


title: 101177_peripheral_CD14

description: human peripheral CD14+ cells


title: 101174_peripheral_CD14

description: human peripheral CD14+ cells


title: 101230_peripheral_CD14

description: human peripheral CD14+ cells


title: 101176_peripheral_CD14

description: human peripheral CD14+ cells


title: 101175_peripheral_CD14

description: human peripheral CD14+ cells


title: 101182_peripheral_CD14

description: human peripheral CD14+ cells


title: 101172_peripheral_CD14

description: human peripheral CD14+ cells


title: 101173_peripheral_CD14

description: human peripheral CD14+ cells


title: 101181_peripheral_CD14

description: human peripheral CD14+ cells


title: 101171_peripheral_CD14

description: human peripheral CD14+ cells


title: 101222_peripheral_CD14

description: human peripheral CD14+ cells


title: 101155_peripheral_CD14

description: human peripheral CD14+ cells


title: 101167_peripheral_CD14

description: human peripheral CD14+ cells


title: 101170_peripheral_CD14

description: human peripheral CD14+ cells


title: 101160_peripheral_CD14

description: human peripheral CD14+ cells


title: 101169_peripheral_CD14

description: human peripheral CD14+ cells


title: 101168_peripheral_CD14

description: human peripheral CD14+ cells


title: 101164_peripheral_CD14

description: human peripheral CD14+ cells


title: 101156_peripheral_CD14

description: human peripheral CD14+ cells


title: 101157_peripheral_CD14

description: human peripheral CD14+ cells


title: 101163_peripheral_CD14

description: human peripheral CD14+ cells


title: 101161_peripheral_CD14

description: human peripheral CD14+ cells


title: 101158_peripheral_CD14

description: human peripheral CD14+ cells


title: 101166_peripheral_CD14

description: human peripheral CD14+ cells


title: 101162_peripheral_CD14

description: human peripheral CD14+ cells


title: 101165_peripheral_CD14

description: human peripheral CD14+ cells


title: 101154_peripheral_CD14

description: human peripheral CD14+ cells


title: 101148_peripheral_CD14

description: human peripheral CD14+ cells


title: 101152_peripheral_CD14

description: human peripheral CD14+ cells


title: 101159_peripheral_CD14

description: human peripheral CD14+ cells


title: 101147_peripheral_CD14

description: human peripheral CD14+ cells


title: 101149_peripheral_CD14

description: human peripheral CD14+ cells


title: 101228_peripheral_CD14

description: human peripheral CD14+ cells


title: 101150_peripheral_CD14

description: human peripheral CD14+ cells


title: 101151_peripheral_CD14

description: human peripheral CD14+ cells


title: 101184_peripheral_CD14

description: human peripheral CD14+ cells


title: 101143_peripheral_CD14

description: human peripheral CD14+ cells


title: 101146_peripheral_CD14

description: human peripheral CD14+ cells


title: 101145_peripheral_CD14

description: human peripheral CD14+ cells


title: 101153_peripheral_CD14

description: human peripheral CD14+ cells


title: 101137_peripheral_CD14

description: human peripheral CD14+ cells


title: 101140_peripheral_CD14

description: human peripheral CD14+ cells


title: 101136_peripheral_CD14

description: human peripheral CD14+ cells


title: 101144_peripheral_CD14

description: human peripheral CD14+ cells


title: 101134_peripheral_CD14

description: human peripheral CD14+ cells


title: 101130_peripheral_CD14

description: human peripheral CD14+ cells


title: 101132_peripheral_CD14

description: human peripheral CD14+ cells


title: 101129_peripheral_CD14

description: human peripheral CD14+ cells


title: 101139_peripheral_CD14

description: human peripheral CD14+ cells


title: 101135_peripheral_CD14

description: human peripheral CD14+ cells


title: 101120_peripheral_CD14

description: human peripheral CD14+ cells


title: 101125_peripheral_CD14

description: human peripheral CD14+ cells


title: 101128_peripheral_CD14

description: human peripheral CD14+ cells


title: 101116_peripheral_CD14

description: human peripheral CD14+ cells


title: 101124_peripheral_CD14

description: human peripheral CD14+ cells


title: 101142_peripheral_CD14

description: human peripheral CD14+ cells


title: 101133_peripheral_CD14

description: human peripheral CD14+ cells


title: 101126_peripheral_CD14

description: human peripheral CD14+ cells


title: 101123_peripheral_CD14

description: human peripheral CD14+ cells


title: 101131_peripheral_CD14

description: human peripheral CD14+ cells


title: 101118_peripheral_CD14

description: human peripheral CD14+ cells


title: 101115_peripheral_CD14

description: human peripheral CD14+ cells


title: 101119_peripheral_CD14

description: human peripheral CD14+ cells


title: 101122_peripheral_CD14

description: human peripheral CD14+ cells


title: 101141_peripheral_CD14

description: human peripheral CD14+ cells


title: 101127_peripheral_CD14

description: human peripheral CD14+ cells


title: 101106_peripheral_CD14

description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


title: 101085_peripheral_CD14

description: human peripheral CD14+ cells


title: 101082_peripheral_CD14

description: human peripheral CD14+ cells


title: 101083_peripheral_CD14

description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


title: 101055_peripheral_CD14

description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


title: 101051_peripheral_CD14

description: human peripheral CD14+ cells


title: 101050_peripheral_CD14

description: human peripheral CD14+ cells


title: 101047_peripheral_CD14

description: human peripheral CD14+ cells


title: 101049_peripheral_CD14

description: human peripheral CD14+ cells


title: 101039_peripheral_CD14

description: human peripheral CD14+ cells


title: 101045_peripheral_CD14

description: human peripheral CD14+ cells


title: 101054_peripheral_CD14

description: human peripheral CD14+ cells


title: 101048_peripheral_CD14

description: human peripheral CD14+ cells


title: 101037_peripheral_CD14

description: human peripheral CD14+ cells


title: 101043_peripheral_CD14

description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


title: 101034_peripheral_CD14

description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


title: 100883_peripheral_CD14

description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


title: 100864_peripheral_CD14

description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


title: 100870_peripheral_CD14

description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


title: 100871_peripheral_CD14

description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


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description: human peripheral CD14+ cells


title: 100858_peripheral_CD14

description: human peripheral CD14+ cells


title: 100859_peripheral_CD14

description: human peripheral CD14+ cells


title: 100862_peripheral_CD14

description: human peripheral CD14+ cells


title: 100850_peripheral_CD14

description: human peripheral CD14+ cells


title: 100854_peripheral_CD14

description: human peripheral CD14+ cells


title: 100863_peripheral_CD14

description: human peripheral CD14+ cells


title: 100856_peripheral_CD14

description: human peripheral CD14+ cells


title: 100852_peripheral_CD14

description: human peripheral CD14+ cells


title: 100846_peripheral_CD14

description: human peripheral CD14+ cells


title: 100855_peripheral_CD14

description: human peripheral CD14+ cells


title: 100849_peripheral_CD14

description: human peripheral CD14+ cells


title: 100857_peripheral_CD14

description: human peripheral CD14+ cells


title: 100851_peripheral_CD14

description: human peripheral CD14+ cells


title: 100845_peripheral_CD14

description: human peripheral CD14+ cells


title: 100842_peripheral_CD14

description: human peripheral CD14+ cells


title: 100848_peripheral_CD14

description: human peripheral CD14+ cells


title: 100847_peripheral_CD14

description: human peripheral CD14+ cells


title: 100860_peripheral_CD14

description: human peripheral CD14+ cells


title: 100843_peripheral_CD14

description: human peripheral CD14+ cells


title: 100853_peripheral_CD14

description: human peripheral CD14+ cells


title: 100840_peripheral_CD14

description: human peripheral CD14+ cells


title: 100836_peripheral_CD14

description: human peripheral CD14+ cells


title: 100838_peripheral_CD14

description: human peripheral CD14+ cells


title: 100834_peripheral_CD14

description: human peripheral CD14+ cells


title: 100897_peripheral_CD14

description: human peripheral CD14+ cells


title: 100833_peripheral_CD14

description: human peripheral CD14+ cells


title: 100841_peripheral_CD14

description: human peripheral CD14+ cells


title: 100844_peripheral_CD14

description: human peripheral CD14+ cells


title: 100832_peripheral_CD14

description: human peripheral CD14+ cells


title: 100835_peripheral_CD14

description: human peripheral CD14+ cells


title: 100837_peripheral_CD14

description: human peripheral CD14+ cells


title: 100831_peripheral_CD14

description: human peripheral CD14+ cells


title: 100830_peripheral_CD14

description: human peripheral CD14+ cells


title: 100901_peripheral_CD14

description: human peripheral CD14+ cells


title: 100825_peripheral_CD14

description: human peripheral CD14+ cells


title: 100823_peripheral_CD14

description: human peripheral CD14+ cells


title: 100827_peripheral_CD14

description: human peripheral CD14+ cells


title: 100826_peripheral_CD14

description: human peripheral CD14+ cells


title: 100828_peripheral_CD14

description: human peripheral CD14+ cells


title: 100829_peripheral_CD14

description: human peripheral CD14+ cells


title: 100822_peripheral_CD14

description: human peripheral CD14+ cells


title: 100814_peripheral_CD14

description: human peripheral CD14+ cells


title: 100824_peripheral_CD14

description: human peripheral CD14+ cells


title: 100810_peripheral_CD14

description: human peripheral CD14+ cells


title: 100815_peripheral_CD14

description: human peripheral CD14+ cells


title: 100808_peripheral_CD14

description: human peripheral CD14+ cells


title: 100817_peripheral_CD14

description: human peripheral CD14+ cells


title: 100818_peripheral_CD14

description: human peripheral CD14+ cells


title: 100816_peripheral_CD14

description: human peripheral CD14+ cells


title: 100811_peripheral_CD14

description: human peripheral CD14+ cells


title: 100819_peripheral_CD14

description: human peripheral CD14+ cells


title: 100839_peripheral_CD14

description: human peripheral CD14+ cells


title: 100806_peripheral_CD14

description: human peripheral CD14+ cells


title: 100821_peripheral_CD14

description: human peripheral CD14+ cells


title: 100809_peripheral_CD14

description: human peripheral CD14+ cells


title: 100807_peripheral_CD14

description: human peripheral CD14+ cells


title: 100813_peripheral_CD14

description: human peripheral CD14+ cells


title: 100820_peripheral_CD14

description: human peripheral CD14+ cells


title: 100805_peripheral_CD14

description: human peripheral CD14+ cells


title: 100804_peripheral_CD14

description: human peripheral CD14+ cells


title: 100812_peripheral_CD14

description: human peripheral CD14+ cells


title: 100803_peripheral_CD14

description: human peripheral CD14+ cells


title: 100796_peripheral_CD14

description: human peripheral CD14+ cells


title: 100797_peripheral_CD14

description: human peripheral CD14+ cells


title: 100792_peripheral_CD14

description: human peripheral CD14+ cells


title: 100793_peripheral_CD14

description: human peripheral CD14+ cells


title: 100790_peripheral_CD14

description: human peripheral CD14+ cells


title: 100791_peripheral_CD14

description: human peripheral CD14+ cells


title: 100799_peripheral_CD14

description: human peripheral CD14+ cells


title: 100800_peripheral_CD14

description: human peripheral CD14+ cells


title: 100795_peripheral_CD14

description: human peripheral CD14+ cells


title: 100785_peripheral_CD14

description: human peripheral CD14+ cells


title: 100786_peripheral_CD14

description: human peripheral CD14+ cells


title: 100794_peripheral_CD14

description: human peripheral CD14+ cells


title: 100772_peripheral_CD14

description: human peripheral CD14+ cells


title: 100788_peripheral_CD14

description: human peripheral CD14+ cells


title: 100776_peripheral_CD14

description: human peripheral CD14+ cells


title: 100780_peripheral_CD14

description: human peripheral CD14+ cells


title: 100784_peripheral_CD14

description: human peripheral CD14+ cells


title: 100782_peripheral_CD14

description: human peripheral CD14+ cells


title: 100774_peripheral_CD14

description: human peripheral CD14+ cells


title: 100778_peripheral_CD14

description: human peripheral CD14+ cells


title: 100783_peripheral_CD14

description: human peripheral CD14+ cells


title: 100773_peripheral_CD14

description: human peripheral CD14+ cells


title: 100787_peripheral_CD14

description: human peripheral CD14+ cells


title: 100802_peripheral_CD14

description: human peripheral CD14+ cells


title: 100779_peripheral_CD14

description: human peripheral CD14+ cells


title: 100777_peripheral_CD14

description: human peripheral CD14+ cells


title: 101264_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells

hyb_protocol: The resuspended samples were hybridized on HumanMethylation 450 BeadChips at 48°C for 16 h.

scan_protocol: Illumina HiScan reader

data_processing: Bead-level methylation data were summarized in GenomeStudio.  Because a two-channel system and both Infinium I and II assays were used, normalization was performed in several steps using the lumi package (27). We first adjusted for color bias using “smooth quantile normalization”. Next, the data were background adjusted by subtracting the median intensity value of the negative control probes.  Lastly, data were normalized across all samples by standard quantile normalization applied to the bead-type intensities and combined across Infinium I and II assays and both colors.

label: Cy5 and Cy3

label_protocol: The Illumina HumanMethylation450 BeadChip and HiScan reader were used to perform the epigenome-wide methylation analysis. The EZ-96 DNA MethylationTM Kit (Zymo Research, Orange, CA) was used for bisulfate conversation with 1ug of input DNA (at 45 ul). 4 ul of bisulfite-converted DNA were used for DNA methylation assays, following the Illumina Infinium HD Methylation protocol. This consisted of a whole genome amplification step followed by enzymatic end-point fragmentation, precipitation, and resuspension.


title: 100767_peripheral_CD14

description: human peripheral CD14+ cells


title: 101262_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100798_peripheral_CD14

description: human peripheral CD14+ cells


title: 100768_peripheral_CD14

description: human peripheral CD14+ cells


title: 100765_peripheral_CD14

description: human peripheral CD14+ cells


title: 101261_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101260_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100775_peripheral_CD14

description: human peripheral CD14+ cells


title: 101259_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101263_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100770_peripheral_CD14

description: human peripheral CD14+ cells


title: 100764_peripheral_CD14

description: human peripheral CD14+ cells


title: 101258_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100762_peripheral_CD14

description: human peripheral CD14+ cells


title: 100759_peripheral_CD14

description: human peripheral CD14+ cells


title: 100756_peripheral_CD14

description: human peripheral CD14+ cells


title: 100751_peripheral_CD14

description: human peripheral CD14+ cells


title: 100760_peripheral_CD14

description: human peripheral CD14+ cells


title: 100757_peripheral_CD14

description: human peripheral CD14+ cells


title: 100752_peripheral_CD14

description: human peripheral CD14+ cells


title: 100761_peripheral_CD14

description: human peripheral CD14+ cells


title: 100754_peripheral_CD14

description: human peripheral CD14+ cells


title: 100755_peripheral_CD14

description: human peripheral CD14+ cells


title: 100753_peripheral_CD14

description: human peripheral CD14+ cells


title: 101257_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100758_peripheral_CD14

description: human peripheral CD14+ cells


title: 100766_peripheral_CD14

description: human peripheral CD14+ cells


title: 101254_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100750_peripheral_CD14

description: human peripheral CD14+ cells


title: 101256_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100771_peripheral_CD14

description: human peripheral CD14+ cells


title: 101255_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101253_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101252_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101251_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101250_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101249_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100801_peripheral_CD14

description: human peripheral CD14+ cells


title: 101244_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100749_peripheral_CD14

description: human peripheral CD14+ cells


title: 100745_peripheral_CD14

description: human peripheral CD14+ cells


title: 101243_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101245_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100739_peripheral_CD14

description: human peripheral CD14+ cells


title: 101246_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100738_peripheral_CD14

description: human peripheral CD14+ cells


title: 100744_peripheral_CD14

description: human peripheral CD14+ cells


title: 100748_peripheral_CD14

description: human peripheral CD14+ cells


title: 101241_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101240_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100742_peripheral_CD14

description: human peripheral CD14+ cells


title: 100740_peripheral_CD14

description: human peripheral CD14+ cells


title: 100747_peripheral_CD14

description: human peripheral CD14+ cells


title: 101247_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100733_peripheral_CD14

description: human peripheral CD14+ cells


title: 100737_peripheral_CD14

description: human peripheral CD14+ cells


title: 101239_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100736_peripheral_CD14

description: human peripheral CD14+ cells


title: 101242_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101235_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101238_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101236_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101248_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101234_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101231_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101233_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101230_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100731_peripheral_CD14

description: human peripheral CD14+ cells


title: 100729_peripheral_CD14

description: human peripheral CD14+ cells


title: 100727_peripheral_CD14

description: human peripheral CD14+ cells


title: 100728_peripheral_CD14

description: human peripheral CD14+ cells


title: 101229_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100725_peripheral_CD14

description: human peripheral CD14+ cells


title: 101226_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101225_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100726_peripheral_CD14

description: human peripheral CD14+ cells


title: 101227_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100724_peripheral_CD14

description: human peripheral CD14+ cells


title: 101224_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101232_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101228_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101223_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101222_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101221_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100718_peripheral_CD14

description: human peripheral CD14+ cells


title: 101220_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100716_peripheral_CD14

description: human peripheral CD14+ cells


title: 100720_peripheral_CD14

description: human peripheral CD14+ cells


title: 100734_peripheral_CD14

description: human peripheral CD14+ cells


title: 100723_peripheral_CD14

description: human peripheral CD14+ cells


title: 100717_peripheral_CD14

description: human peripheral CD14+ cells


title: 101218_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101217_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100722_peripheral_CD14

description: human peripheral CD14+ cells


title: 100714_peripheral_CD14

description: human peripheral CD14+ cells


title: 100719_peripheral_CD14

description: human peripheral CD14+ cells


title: 101219_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100735_peripheral_CD14

description: human peripheral CD14+ cells


title: 100715_peripheral_CD14

description: human peripheral CD14+ cells


title: 100769_peripheral_CD14

description: human peripheral CD14+ cells


title: 101216_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101214_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101215_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101213_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101212_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101211_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100705_peripheral_CD14

description: human peripheral CD14+ cells


title: 100709_peripheral_CD14

description: human peripheral CD14+ cells


title: 100730_peripheral_CD14

description: human peripheral CD14+ cells


title: 100707_peripheral_CD14

description: human peripheral CD14+ cells


title: 100704_peripheral_CD14

description: human peripheral CD14+ cells


title: 100713_peripheral_CD14

description: human peripheral CD14+ cells


title: 101208_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101210_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100721_peripheral_CD14

description: human peripheral CD14+ cells


title: 101207_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101205_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101206_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101209_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101203_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101204_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100703_peripheral_CD14

description: human peripheral CD14+ cells


title: 100699_peripheral_CD14

description: human peripheral CD14+ cells


title: 100700_peripheral_CD14

description: human peripheral CD14+ cells


title: 101202_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100698_peripheral_CD14

description: human peripheral CD14+ cells


title: 100743_peripheral_CD14

description: human peripheral CD14+ cells


title: 100696_peripheral_CD14

description: human peripheral CD14+ cells


title: 100702_peripheral_CD14

description: human peripheral CD14+ cells


title: 100706_peripheral_CD14

description: human peripheral CD14+ cells


title: 101200_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101201_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100692_peripheral_CD14

description: human peripheral CD14+ cells


title: 100693_peripheral_CD14

description: human peripheral CD14+ cells


title: 100701_peripheral_CD14

description: human peripheral CD14+ cells


title: 100695_peripheral_CD14

description: human peripheral CD14+ cells


title: 101199_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101196_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101198_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101193_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101195_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101194_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101197_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101191_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100688_peripheral_CD14

description: human peripheral CD14+ cells


title: 100691_peripheral_CD14

description: human peripheral CD14+ cells


title: 100689_peripheral_CD14

description: human peripheral CD14+ cells


title: 101192_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100687_peripheral_CD14

description: human peripheral CD14+ cells


title: 100686_peripheral_CD14

description: human peripheral CD14+ cells


title: 101190_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100690_peripheral_CD14

description: human peripheral CD14+ cells


title: 100694_peripheral_CD14

description: human peripheral CD14+ cells


title: 100697_peripheral_CD14

description: human peripheral CD14+ cells


title: 100680_peripheral_CD14

description: human peripheral CD14+ cells


title: 101189_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100681_peripheral_CD14

description: human peripheral CD14+ cells


title: 100684_peripheral_CD14

description: human peripheral CD14+ cells


title: 100685_peripheral_CD14

description: human peripheral CD14+ cells


title: 101187_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101188_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101183_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101185_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101182_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101181_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101184_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101180_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101179_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100732_peripheral_CD14

description: human peripheral CD14+ cells


title: 100682_peripheral_CD14

description: human peripheral CD14+ cells


title: 100677_peripheral_CD14

description: human peripheral CD14+ cells


title: 100712_peripheral_CD14

description: human peripheral CD14+ cells


title: 100674_peripheral_CD14

description: human peripheral CD14+ cells


title: 100678_peripheral_CD14

description: human peripheral CD14+ cells


title: 100676_peripheral_CD14

description: human peripheral CD14+ cells


title: 100683_peripheral_CD14

description: human peripheral CD14+ cells


title: 100679_peripheral_CD14

description: human peripheral CD14+ cells


title: 100670_peripheral_CD14

description: human peripheral CD14+ cells


title: 100669_peripheral_CD14

description: human peripheral CD14+ cells


title: 100667_peripheral_CD14

description: human peripheral CD14+ cells


title: 100672_peripheral_CD14

description: human peripheral CD14+ cells


title: 101175_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100671_peripheral_CD14

description: human peripheral CD14+ cells


title: 100668_peripheral_CD14

description: human peripheral CD14+ cells


title: 101172_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101178_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100673_peripheral_CD14

description: human peripheral CD14+ cells


title: 100665_peripheral_CD14

description: human peripheral CD14+ cells


title: 100664_peripheral_CD14

description: human peripheral CD14+ cells


title: 101174_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101171_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101170_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101173_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100666_peripheral_CD14

description: human peripheral CD14+ cells


title: 101176_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100675_peripheral_CD14

description: human peripheral CD14+ cells


title: 101169_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101168_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101167_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100661_peripheral_CD14

description: human peripheral CD14+ cells


title: 101166_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101165_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100662_peripheral_CD14

description: human peripheral CD14+ cells


title: 101164_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100660_peripheral_CD14

description: human peripheral CD14+ cells


title: 101163_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100656_peripheral_CD14

description: human peripheral CD14+ cells


title: 101162_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100658_peripheral_CD14

description: human peripheral CD14+ cells


title: 101161_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101160_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101158_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101159_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101157_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 101154_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100657_peripheral_CD14

description: human peripheral CD14+ cells


title: 100648_peripheral_CD14

description: human peripheral CD14+ cells


title: 100646_peripheral_CD14

description: human peripheral CD14+ cells


title: 101153_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100650_peripheral_CD14

description: human peripheral CD14+ cells


title: 100645_peripheral_CD14

description: human peripheral CD14+ cells


title: 101152_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100652_peripheral_CD14

description: human peripheral CD14+ cells


title: 101151_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100654_peripheral_CD14

description: human peripheral CD14+ cells


title: 100647_peripheral_CD14

description: human peripheral CD14+ cells


title: 100643_peripheral_CD14

description: human peripheral CD14+ cells


title: 100644_peripheral_CD14

description: human peripheral CD14+ cells


title: 100649_peripheral_CD14

description: human peripheral CD14+ cells


title: 101156_peripheral_CD14 [methylation]

description: human peripheral CD14+ cells


title: 100641_peripheral_CD14

description: human peripheral CD14+ cells