title: Colorectal adenocarcinoma tumor 561

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample561

value: Adenocarcinoma

tag: Stage

tag: site

value: Left


title: H1B_Ascl1_d2

status: Public on Jun 05 2018

type: SRA

city: Leipzig

first: Gray

last: Camp

address: Deutscher Pl. 6

department: Evolutionary Genetics

country: Germany

institute: Max Planck Institute for Evolutionary Anthropology

description:
H1B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

library_source: transcriptomic

data_processing:
"freeIbis" was used as an efficient basecaller with calibrated quality scores for Illumina sequencers. (Bioinformatics. 2013 May 1;29(9):1208-9. doi: 10.1093/bioinformatics/btt117. Epub 2013 Mar 6.)
"leeHom" was used to trim adapters and merge Illumina sequencing reads. (Nucleic Acids Res. 2014 Oct;42(18):e141. doi: 10.1093/nar/gku699. Epub 2014 Aug 6.)
"deML" was used for robust demultiplexing of Illumina sequences using a likelihood-based approach. (Bioinformatics. 2015 Mar 1;31(5):770-2. doi: 10.1093/bioinformatics/btu719. Epub 2014 Oct 30.)
Reads were aligned against the human genome (build GRCh38.77 from ENSEMBLE) or mouse genome (mm10 from UCSC) using TopHat v2.0.14. The genome was indexed using Bowtie v2.2.6
Fragments Per Kilobase of transcript Per Million mapped reads (FPKM) values were computed using cufflinks v2.2.1
Genome_build: GRCh38
Supplementary_files_format_and_content: Master data frame including sample name, gene ID, and FPKM values for each single cell.

molecule: total RNA

organism: Homo sapiens

growth_protocol: Differentiation medium

extract_protocol:
Single cell isolation by FACS and cDNA generation following SmartSeq2 protocol. (Nat Protoc. 2014 Jan;9(1):171-81. doi: 10.1038/nprot.2014.006. Epub 2014 Jan 2.)
Libraries were prepared using Illumina Nextera XT kit according to illumina's protocol.

tag: donor id

value: Donor 1

tag: tissue source

value: brain

tag: cell type

tag: genotype/variation

value: Ascl1 only transduced

tag: timepoint (days post infection)


title: genomic DNA from peripheral white blood cells [200992340046_R02C01]

type: genomic

city: Pamplona

first: Ana

last: Arpón

address: Irunlarrea 1

country: Spain

institute: University of Navarra

hyb_protocol: Bisulphite converted DNA from 474 samples from different cohorts were hybridised to the Illumina Infinium 450k Human Methylation Beadchip (DiOGenes-UNAV, EPALIP, Food4Me-UNAV, GEDYMET, ICTUS, NUGENOB-UNAV, PREDIMED-UNAV, RESMENA, NormoP) or Infinium MethylationEPIC Beadchip (OBEKIT).

scan_protocol: Arrays were imaged using Illumina hiScanSQ platform

data_processing:
After obtaining intensity data from minfi R package, filtering probes is performed in probes with a detection p-value above 0.01 in one or more samples, probes with a beadcount <3 in at least 5% of samples,probes non-cpg, probes with SNPs as identified in Nordlund et al, probes that align to multiple locations as identified in Nordlund et al and probes on the X or Y by champ.filter function of ChAMP version 1.11.0.  After filtering probes, intra-cell type normalization is done using Subset-quantile Within Array Normalization (SWAN) method.  After SWAN normalization, magnitude of batch effects are assessed and corrected using the ComBat normalization method.  To correct for the differences in methylation resulting from differences in cellular heterogeneity, the Houseman correction was used (Houseman et al. 2012).
Matrix_processed.txt: Normalized Average Beta using SWAN (Subset-quantile Within Array Normalization) normalization of ChAMP R package
Matrix_signal_intensities.txt: Unmethylated and methylated signal intensities by getMeth and getUnmet function of minfi R package.

label: Cy5 and Cy3

molecule: genomic DNA

source_name: peripheral white blood cells

label_protocol: Standard Illumina Protocol

extract_protocol: Genomic DNA was extracted and purified from samples using MasterPure™DNA Purification Kit for Blood according to standard instructions

tag: Sex

value: Male

tag: age

tag: study

value: OBEKIT

tag: array

value: EPIC

tag: homa-ir

tag: waist circumference (cm)


title: genomic DNA from peripheral white blood cells [200992340046_R01C01]

value: Female


title: H2B_Ascl1_d2

description:
H2B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: H3B_Ascl1_d2

description:
H3B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: H4B_Ascl1_d2

description:
H4B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 562

city: Parkville

first: Oliver

last: Sieber

state: VIC

address: 1G Royal Parade

country: Australia

institute: Walter and Eliza Hall Insitute of Medical Reseach

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample562

hyb_protocol: Standard Illumina protocols for Human 610w-Quad chip

data_processing:
Log R ratio and B allele frequency were generated using using GenomeStudio (Illumina)
matrix_processed.txt is linked as a supplementary file on the Series record.  The file reports Genotype: AA,AB,BB,or NC (no call), GC_SCORE, Theta, R, B_Allele_Freq, Log_R_Ratio.
signal_intensities.txt is linked as a supplementary file on the Series record.

label: C-Bio and A-DNP

source_name: Colorectal adenocarcinoma

extract_protocol: AllPrep DNA/RNA Mini Kit (QUAGEN)

tag: gender

value: M

tag: tissue

value: Colorectal adenocarcinoma

tag: disease state

value: C

value: Right

tag: estimated macrod2 status

value: Heterozygous deletion

tag: estimated chromosome segment number (ecsn)


title: H7B_Ascl1_d2

description:
H7B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [200991630125_R08C01]


title: G9B_Ascl1_d2

description:
G9B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 559

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample559

scan_protocol: Standard Illumina protocols for Human 610w-Quad chip

tag: Stage

value: B

tag: site

value: Wild-type


title: genomic DNA from peripheral white blood cells [200991630125_R07C01]


title: H8B_Ascl1_d2

description:
H8B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: Colorectal adenocarcinoma tumor 558

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample558

label_protocol: Standard Illumina protocols for Human 610w-Quad chip

value: F

value: D


title: H9B_Ascl1_d2

description:
H9B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: A11B_Ascl1_d7

description:
A11B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: genomic DNA from peripheral white blood cells [200991630125_R06C01]

tag: Sex

tag: age


title: Colorectal adenocarcinoma tumor 557

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample557

value: Adenocarcinoma

value: Left


title: A1B_Ascl1_d7

description:
A1B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1

value: brain


title: A5B_Ascl1_d7

description:
A5B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 only transduced


title: genomic DNA from peripheral white blood cells [200991630125_R04C01]

tag: study

value: OBEKIT

tag: array


title: Colorectal adenocarcinoma tumor 560

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample560

value: Rectum


title: genomic DNA from peripheral white blood cells [200991630125_R02C01]

value: Female

value: EPIC

tag: homa-ir

tag: waist circumference (cm)


title: B12B_Ascl1_d7

description:
B12B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A7B_Ascl1_d7

description:
A7B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [200991630125_R01C01]


title: B1B_Ascl1_d7

description:
B1B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [200991630111_R08C01]


title: A4B_Ascl1_d7

description:
A4B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [200991630125_R03C01]


title: A6B_Ascl1_d7

description:
A6B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 553

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample553

tag: gender

value: M

tag: tissue

value: Colorectal adenocarcinoma


title: G7B_Ascl1_d2

description:
G7B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: B7B_Ascl1_d7

description:
B7B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 552

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample552

tag: disease state

value: Right

tag: estimated macrod2 status


title: Colorectal adenocarcinoma tumor 551

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample551

tag: Stage

value: Heterozygous deletion

tag: estimated chromosome segment number (ecsn)


title: Colorectal adenocarcinoma tumor 555

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample555

tag: site


title: genomic DNA from peripheral white blood cells [200991630125_R05C01]

value: Male


title: H12B_Ascl1_d2

description:
H12B_Ascl1d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: A3B_Ascl1_d7

description:
A3B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: Colorectal adenocarcinoma tumor 556

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample556

value: Homozygous deletion


title: B11B_Ascl1_d7

description:
B11B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: B5B_Ascl1_d7

description:
B5B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C10B_Ascl1_d7

description:
C10B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: B9B_Ascl1_d7

description:
B9B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [200991630111_R07C01]

tag: Sex

tag: age


title: Colorectal adenocarcinoma tumor 550

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample550

value: F

value: Wild-type


title: C11B_Ascl1_d7

description:
C11B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 554

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample554

value: Adenocarcinoma

value: A


title: genomic DNA from peripheral white blood cells [200991630111_R06C01]

tag: study

tag: array


title: Colorectal adenocarcinoma tumor 549

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample549


title: B8B_Ascl1_d7

description:
B8B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1


title: C6B_Ascl1_d7

description:
C6B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: brain


title: Colorectal adenocarcinoma tumor 548

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample548

value: C

value: Left


title: C7B_Ascl1_d7

description:
C7B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 only transduced


title: genomic DNA from peripheral white blood cells [200991630111_R05C01]

value: Female

value: OBEKIT

tag: homa-ir

tag: waist circumference (cm)


title: genomic DNA from peripheral white blood cells [200991630111_R04C01]

value: EPIC


title: Colorectal adenocarcinoma tumor 547

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample547

tag: gender

value: M

tag: tissue

value: Colorectal adenocarcinoma


title: C8B_Ascl1_d7

description:
C8B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D11B_Ascl1_d7

description:
D11B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C9B_Ascl1_d7

description:
C9B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D10B_Ascl1_d7

description:
D10B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D1B_Ascl1_d7

description:
D1B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D3B_Ascl1_d7

description:
D3B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 545

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample545

tag: disease state

value: Right

tag: estimated macrod2 status


title: D2B_Ascl1_d7

description:
D2B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [200991630111_R03C01]

value: Male


title: genomic DNA from peripheral white blood cells [200991630111_R02C01]


title: D4B_Ascl1_d7

description:
D4B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 546

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample546

tag: Stage

value: B

value: Heterozygous deletion

tag: estimated chromosome segment number (ecsn)


title: genomic DNA from peripheral white blood cells [200991630111_R01C01]


title: Colorectal adenocarcinoma tumor 543

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample543

tag: site


title: D5B_Ascl1_d7

description:
D5B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: C4B_Ascl1_d7

description:
C4B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: D7B_Ascl1_d7

description:
D7B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: D6B_Ascl1_d7

description:
D6B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C3B_Ascl1_d7

description:
C3B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D8B_Ascl1_d7

description:
D8B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 542

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample542

value: F


title: Colorectal adenocarcinoma tumor 541

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample541

value: Adenocarcinoma


title: genomic DNA from peripheral white blood cells [9969477164_R04C01]

tag: Sex

tag: age

value: NUGENOB


title: genomic DNA from peripheral white blood cells [9969477164_R04C02]

tag: study

tag: array


title: E10B_Ascl1_d7

description:
E10B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1


title: E11B_Ascl1_d7

description:
E11B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: brain


title: E1B_Ascl1_d7

description:
E1B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 539

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample539

value: C

value: Wild-type


title: E5B_Ascl1_d7

description:
E5B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 only transduced


title: E6B_Ascl1_d7

description:
E6B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: E2B_Ascl1_d7

description:
E2B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 537

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample537


title: Colorectal adenocarcinoma tumor 540

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample540


title: F10B_Ascl1_d7

description:
F10B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: E9B_Ascl1_d7

description:
E9B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9878827020_R06C01]

tag: waist circumference (cm)


title: genomic DNA from peripheral white blood cells [9969477164_R02C02]

tag: homa-ir


title: genomic DNA from peripheral white blood cells [9969477164_R02C01]


title: genomic DNA from peripheral white blood cells [9878827020_R06C02]

value: Female

value: DIOGENES


title: F1B_Ascl1_d7

description:
F1B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: E8B_Ascl1_d7

description:
E8B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9969477164_R03C02]


title: Colorectal adenocarcinoma tumor 544

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample544

tag: gender

tag: tissue

value: Left


title: E7B_Ascl1_d7

description:
E7B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9878827020_R05C02]


title: Colorectal adenocarcinoma tumor 535

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample535

tag: disease state

tag: estimated macrod2 status


title: Colorectal adenocarcinoma tumor 538

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample538

value: M

tag: Stage

value: Rectum

value: Homozygous deletion

tag: estimated chromosome segment number (ecsn)


title: F3B_Ascl1_d7

description:
F3B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id


title: F11B_Ascl1_d7

description:
F11B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: tissue source


title: F5B_Ascl1_d7

description:
F5B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type


title: F6B_Ascl1_d7

description:
F6B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: genotype/variation


title: Colorectal adenocarcinoma tumor 536

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample536

value: Colorectal adenocarcinoma

tag: site

value: Right


title: F8B_Ascl1_d7

description:
F8B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: genomic DNA from peripheral white blood cells [9878827020_R03C02]

tag: Sex

tag: age


title: genomic DNA from peripheral white blood cells [9878827020_R04C01]

tag: study

tag: array


title: genomic DNA from peripheral white blood cells [9878827020_R05C01]

tag: homa-ir

tag: waist circumference (cm)


title: Colorectal adenocarcinoma tumor 534

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample534

tag: gender

tag: tissue


title: Colorectal adenocarcinoma tumor 533

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample533

tag: disease state

value: B

tag: estimated macrod2 status


title: Colorectal adenocarcinoma tumor 532

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample532

tag: Stage

value: D

value: Heterozygous deletion

tag: estimated chromosome segment number (ecsn)


title: G11B_Ascl1_d7

description:
G11B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: genomic DNA from peripheral white blood cells [9878827020_R01C02]

value: NUGENOB


title: G2B_Ascl1_d7

description:
G2B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1

tag: cell type

tag: genotype/variation


title: G3B_Ascl1_d7

description:
G3B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: brain

tag: timepoint (days post infection)


title: G4B_Ascl1_d7

description:
G4B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: G6B_Ascl1_d7

description:
G6B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 530

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample530

value: Adenocarcinoma

value: A

tag: site


title: 9904796043_R06C02

city: Bloomington

first: Kenneth

last: Nephew

state: IN

country: USA

institute: Indiana University

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing: RnBeads v0.99

source_name: human ovarian cancer tissue

extract_protocol: genomic DNA was extracted and and purified from ovarian cancer tissues or ascites from ovarian cancer patients using Qiagen AllPrep DNA/RNA/protein mini kit

tag: patient id

tag: organ

value: ovary

value: human ovarian cancer tissue

tag: treatment

value: post-guadecitabine


title: G9B_Ascl1_d7

description:
G9B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 only transduced


title: Colorectal adenocarcinoma tumor 529

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample529

value: F

value: C

value: Wild-type


title: genomic DNA from peripheral white blood cells [9769100148_R06C02]

tag: Sex

value: Female

tag: age

tag: study

tag: array

tag: homa-ir


title: H10B_Ascl1_d7

description:
H10B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F7B_Ascl1_d7

description:
F7B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: H11B_Ascl1_d7

description:
H11B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: H2B_Ascl1_d7

description:
H2B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9769100148_R04C02]

tag: waist circumference (cm)


title: Colorectal adenocarcinoma tumor 528

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample528

tag: gender

value: M

tag: tissue

value: Colorectal adenocarcinoma

tag: disease state

tag: Stage

value: Right

tag: estimated macrod2 status


title: H3B_Ascl1_d7

description:
H3B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source

tag: cell type

tag: genotype/variation


title: genomic DNA from peripheral white blood cells [9769100148_R02C02]


title: H4B_Ascl1_d7

description:
H4B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: Colorectal adenocarcinoma tumor 527

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample527

tag: site

tag: estimated chromosome segment number (ecsn)


title: H8B_Ascl1_d7

description:
H8B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: H6B_Ascl1_d7

description:
H6B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: G10B_Ascl1_d7

description:
G10B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9704031113_R06C02]

tag: Sex

tag: age


title: genomic DNA from peripheral white blood cells [9878827020_R01C01]

value: Male

tag: study

value: DIOGENES

tag: array


title: H9B_Ascl1_d7

description:
H9B_Ascl1d7
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1


title: Colorectal adenocarcinoma tumor 526

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample526

value: Left


title: Colorectal adenocarcinoma tumor 531

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample531

value: Adenocarcinoma

value: Rectum


title: E5A_Ascl1_Sox2_d14

description:
E5A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: brain

value: Ascl1 and Sox2 transduced


title: Colorectal adenocarcinoma tumor 525

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample525


title: E6A_Ascl1_Sox2_d14

description:
E6A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9769100148_R06C01]

value: NUGENOB

tag: waist circumference (cm)


title: E8A_Ascl1_Sox2_d14

description:
E8A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: E9A_Ascl1_Sox2_d14

description:
E9A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9704031113_R05C01]


title: Colorectal adenocarcinoma tumor 524

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample524

tag: gender

value: Homozygous deletion


title: Colorectal adenocarcinoma tumor 523

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample523

value: F

tag: tissue

value: B


title: F10A_Ascl1_Sox2_d14

description:
F10A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F11A_Ascl1_Sox2_d14

description:
F11A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9704031113_R03C02]


title: genomic DNA from peripheral white blood cells [9704031113_R04C01]


title: genomic DNA from peripheral white blood cells [9704031113_R05C02]

tag: homa-ir


title: genomic DNA from peripheral white blood cells [9704031113_R02C01]


title: genomic DNA from peripheral white blood cells [9704031113_R01C02]


title: F9A_Ascl1_Sox2_d14

description:
F9A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F12A_Ascl1_Sox2_d14

description:
F12A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F2A_Ascl1_Sox2_d14

description:
F2A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F3A_Ascl1_Sox2_d14

description:
F3A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F6A_Ascl1_Sox2_d14

description:
F6A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F7A_Ascl1_Sox2_d14

description:
F7A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 522

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample522

tag: disease state

tag: Stage

value: C

value: Heterozygous deletion


title: F4A_Ascl1_Sox2_d14

description:
F4A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id


title: F8A_Ascl1_Sox2_d14

description:
F8A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: tissue source


title: G10A_Ascl1_Sox2_d14

description:
G10A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type


title: Colorectal adenocarcinoma tumor 518

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample518

value: M

value: D

tag: estimated macrod2 status

value: Wild-type


title: Colorectal adenocarcinoma tumor 520

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample520

value: Colorectal adenocarcinoma

value: A


title: G11A_Ascl1_Sox2_d14

description:
G11A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1

tag: genotype/variation

tag: timepoint (days post infection)


title: Colorectal adenocarcinoma tumor 519

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample519

tag: site

value: Left

tag: estimated chromosome segment number (ecsn)


title: genomic DNA from peripheral white blood cells [9704031113_R01C01]

tag: Sex

value: Female

tag: age


title: genomic DNA from peripheral white blood cells [9704031113_R04C02]

tag: study

value: DIOGENES

tag: array


title: Colorectal adenocarcinoma tumor 517

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample517

tag: gender

value: Adenocarcinoma

value: Rectum


title: Colorectal adenocarcinoma tumor 521

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample521

tag: tissue

value: Right


title: G1A_Ascl1_Sox2_d14

description:
G1A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: brain

value: Ascl1 and Sox2 transduced


title: genomic DNA from peripheral white blood cells [9274651103_R06C01]

value: Male

value: ICTUS

tag: homa-ir

tag: waist circumference (cm)


title: Colorectal adenocarcinoma tumor 516

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample516

tag: disease state

tag: Stage

value: C


title: G3A_Ascl1_Sox2_d14

description:
G3A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: genomic DNA from peripheral white blood cells [9704031113_R03C01]

value: NUGENOB


title: F5A_Ascl1_Sox2_d14

description:
F5A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type


title: G12A_Ascl1_Sox2_d14

description:
G12A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: genotype/variation


title: G4A_Ascl1_Sox2_d14

description:
G4A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: genomic DNA from peripheral white blood cells [9274651103_R03C01]


title: Colorectal adenocarcinoma tumor 515

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample515

value: F

value: B

tag: site

tag: estimated macrod2 status

value: Heterozygous deletion


title: G7A_Ascl1_Sox2_d14

description:
G7A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: G5A_Ascl1_Sox2_d14

description:
G5A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: H1A_Ascl1_Sox2_d14

description:
H1A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: G8A_Ascl1_Sox2_d14

description:
G8A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: H10A_Ascl1_Sox2_d14

description:
H10A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: G9A_Ascl1_Sox2_d14

description:
G9A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 513

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample513

value: M

value: Colorectal adenocarcinoma

value: Homozygous deletion

tag: estimated chromosome segment number (ecsn)


title: Colorectal adenocarcinoma tumor 512

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample512

value: Left

value: Wild-type


title: Colorectal adenocarcinoma tumor 514

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample514

value: Adenocarcinoma


title: genomic DNA from peripheral white blood cells [9274651103_R02C01]

tag: Sex

value: Female

tag: age


title: H11A_Ascl1_Sox2_d14

description:
H11A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1


title: H2A_Ascl1_Sox2_d14

description:
H2A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: brain


title: Colorectal adenocarcinoma tumor 511

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample511


title: genomic DNA from peripheral white blood cells [9274651103_R04C01]

tag: study

tag: array


title: Colorectal adenocarcinoma tumor 510

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample510

tag: gender

tag: tissue


title: genomic DNA from peripheral white blood cells [9274651103_R01C02]

tag: homa-ir

tag: waist circumference (cm)


title: genomic DNA from peripheral white blood cells [9274651039_R06C02]

value: EPALIP


title: H3A_Ascl1_Sox2_d14

description:
H3A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 and Sox2 transduced


title: H4A_Ascl1_Sox2_d14

description:
H4A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 509

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample509

tag: disease state

tag: Stage

value: Rectum


title: genomic DNA from peripheral white blood cells [9257626076_R06C02]


title: H7A_Ascl1_Sox2_d14

description:
H7A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: H6A_Ascl1_Sox2_d14

description:
H6A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: genomic DNA from peripheral white blood cells [9274651103_R05C01]

value: ICTUS


title: G6A_Ascl1_Sox2_d14

description:
G6A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: genomic DNA from peripheral white blood cells [9274651103_R02C02]


title: genomic DNA from peripheral white blood cells [9257626076_R06C01]


title: genomic DNA from peripheral white blood cells [9257626076_R05C02]


title: genomic DNA from peripheral white blood cells [9257626076_R05C01]


title: Colorectal adenocarcinoma tumor 506

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample506

tag: site

value: Right

tag: estimated macrod2 status


title: A3A_Ascl1_Sox2_d14

description:
A3A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A12A_Ascl1_Sox2_d14

description:
A12A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9257626076_R04C01]

tag: Sex


title: Colorectal adenocarcinoma tumor 504

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample504

value: F

value: D

tag: estimated chromosome segment number (ecsn)


title: A11A_Ascl1_Sox2_d14

description:
A11A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 505

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample505

value: C

value: Heterozygous deletion


title: A8A_Ascl1_Sox2_d14

description:
A8A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A10A_Ascl1_Sox2_d14

description:
A10A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 503

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample503

value: Colorectal adenocarcinoma

value: B


title: Colorectal adenocarcinoma tumor 507

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample507


title: A1A_Ascl1_Sox2_d14

description:
A1A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A5A_Ascl1_Sox2_d14

description:
A5A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A6A_Ascl1_Sox2_d14

description:
A6A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A7A_Ascl1_Sox2_d14

description:
A7A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: B12A_Ascl1_Sox2_d14

description:
B12A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 502

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample502


title: genomic DNA from peripheral white blood cells [9257626076_R03C02]

tag: age

tag: study


title: B3A_Ascl1_Sox2_d14

description:
B3A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A4A_Ascl1_Sox2_d14

description:
A4A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A9A_Ascl1_Sox2_d14

description:
A9A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: B4A_Ascl1_Sox2_d14

description:
B4A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9257626076_R03C01]

tag: array


title: H5A_Ascl1_Sox2_d14

description:
H5A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 508

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample508

tag: gender

value: M

tag: tissue


title: B5A_Ascl1_Sox2_d14

description:
B5A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 501

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample501

value: Wild-type


title: genomic DNA from peripheral white blood cells [9257626076_R04C02]

tag: homa-ir

tag: waist circumference (cm)


title: Colorectal adenocarcinoma tumor 500

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample500

tag: disease state

value: Adenocarcinoma

tag: Stage


title: B8A_Ascl1_Sox2_d14

description:
B8A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: genomic DNA from peripheral white blood cells [9257626076_R02C02]

value: Female


title: C11A_Ascl1_Sox2_d14

description:
C11A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1

tag: cell type

tag: genotype/variation


title: genomic DNA from peripheral white blood cells [9257626076_R02C01]


title: C12A_Ascl1_Sox2_d14

description:
C12A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: brain

tag: timepoint (days post infection)


title: Colorectal adenocarcinoma tumor 499

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample499

tag: site

value: Left

tag: estimated macrod2 status

value: Homozygous deletion


title: genomic DNA from peripheral white blood cells [9257626076_R01C02]

tag: Sex

value: EPALIP


title: C10A_Ascl1_Sox2_d14

description:
C10A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 and Sox2 transduced


title: genomic DNA from peripheral white blood cells [9257626076_R01C01]

tag: age


title: Colorectal adenocarcinoma tumor 497

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample497

value: Right

tag: estimated chromosome segment number (ecsn)


title: Colorectal adenocarcinoma tumor 496

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample496

value: F


title: Colorectal adenocarcinoma tumor 498

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample498


title: C5A_Ascl1_Sox2_d14

description:
C5A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C2A_Ascl1_Sox2_d14

description:
C2A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C7A_Ascl1_Sox2_d14

description:
C7A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C3A_Ascl1_Sox2_d14

description:
C3A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C4A_Ascl1_Sox2_d14

description:
C4A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9257626038_R06C01]

tag: study

tag: array


title: C1A_Ascl1_Sox2_d14

description:
C1A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9257626038_R06C02]


title: Colorectal adenocarcinoma tumor 495

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample495

tag: gender

tag: tissue

value: Rectum


title: genomic DNA from peripheral white blood cells [9257626038_R05C02]

tag: homa-ir

tag: waist circumference (cm)


title: C8A_Ascl1_Sox2_d14

description:
C8A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D10A_Ascl1_Sox2_d14

description:
D10A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C9A_Ascl1_Sox2_d14

description:
C9A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 494

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample494

tag: disease state

tag: Stage

value: C


title: B6A_Ascl1_Sox2_d14

description:
B6A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: D12A_Ascl1_Sox2_d14

description:
D12A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: D11A_Ascl1_Sox2_d14

description:
D11A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: D5A_Ascl1_Sox2_d14

description:
D5A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D8A_Ascl1_Sox2_d14

description:
D8A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9257626038_R05C01]


title: D2A_Ascl1_Sox2_d14

description:
D2A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9257626038_R02C02]


title: Colorectal adenocarcinoma tumor 493

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample493

tag: site

tag: estimated macrod2 status


title: E2A_Ascl1_Sox2_d14

description:
E2A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 488

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample488


title: Colorectal adenocarcinoma tumor 489

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample489


title: Colorectal adenocarcinoma tumor 487

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample487

value: Heterozygous deletion


title: E3A_Ascl1_Sox2_d14

description:
E3A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: E4A_Ascl1_Sox2_d14

description:
E4A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9257626038_R01C02]

tag: Sex

tag: age


title: D1A_Ascl1_Sox2_d14

description:
D1A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 492

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample492

value: Colorectal adenocarcinoma

value: D

tag: estimated chromosome segment number (ecsn)


title: genomic DNA from peripheral white blood cells [9257626038_R04C02]

tag: study

tag: array


title: genomic DNA from peripheral white blood cells [9257626038_R04C01]


title: Colorectal adenocarcinoma tumor 491

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample491

tag: gender

tag: tissue

value: A


title: D6A_Ascl1_Sox2_d14

description:
D6A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [9257626038_R03C01]

tag: homa-ir

tag: waist circumference (cm)


title: Colorectal adenocarcinoma tumor 490

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample490

tag: disease state

tag: Stage

value: B

value: Wild-type


title: genomic DNA from peripheral white blood cells [9257626038_R03C02]

value: Female


title: D4A_Ascl1_Sox2_d14

description:
D4A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

value: Donor 1

tag: tissue source


title: E11A_Ascl1_Sox2_d14

description:
E11A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: brain

tag: cell type

tag: genotype/variation


title: genomic DNA from peripheral white blood cells [9257626038_R02C01]


title: E12A_Ascl1_Sox2_d14

description:
E12A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: D9A_Ascl1_Sox2_d14

description:
D9A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: E10A_Ascl1_Sox2_d14

description:
E10A_Ascl1Sox2d14
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 485

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample485

value: M

value: Adenocarcinoma

tag: site

value: Left

tag: estimated macrod2 status


title: Colorectal adenocarcinoma tumor 486

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample486


title: genomic DNA from peripheral white blood cells [9257626038_R01C01]

tag: Sex

tag: age

value: EPALIP


title: Colorectal adenocarcinoma tumor 484

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample484

tag: estimated chromosome segment number (ecsn)


title: A12A_Ascl1_Sox2_d2

description:
A12A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 and Sox2 transduced


title: A2A_Ascl1_Sox2_d2

description:
A2A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A3A_Ascl1_Sox2_d2

description:
A3A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800057_R06C02]

tag: study

value: RESMENA

tag: array


title: A11A_Ascl1_Sox2_d2

description:
A11A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A10A_Ascl1_Sox2_d2

description:
A10A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A5A_Ascl1_Sox2_d2

description:
A5A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 483

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample483

tag: gender

tag: tissue


title: A6A_Ascl1_Sox2_d2

description:
A6A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800057_R06C01]

tag: homa-ir

tag: waist circumference (cm)


title: genomic DNA from peripheral white blood cells [8363800057_R05C02]


title: Colorectal adenocarcinoma tumor 482

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample482

tag: disease state

tag: Stage

value: Rectum


title: A7A_Ascl1_Sox2_d2

description:
A7A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: A9A_Ascl1_Sox2_d2

description:
A9A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: genomic DNA from peripheral white blood cells [8363800057_R05C01]

value: Male


title: Colorectal adenocarcinoma tumor 481

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample481

value: F

value: C

tag: site


title: B11A_Ascl1_Sox2_d2

description:
B11A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: B10A_Ascl1_Sox2_d2

description:
B10A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800057_R04C01]

tag: Sex


title: B12A_Ascl1_Sox2_d2

description:
B12A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 480

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample480

value: Colorectal adenocarcinoma

tag: estimated macrod2 status


title: genomic DNA from peripheral white blood cells [8363800057_R03C02]

tag: age


title: B1A_Ascl1_Sox2_d2

description:
B1A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: B2A_Ascl1_Sox2_d2

description:
B2A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 479

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample479

value: Right

value: Heterozygous deletion

tag: estimated chromosome segment number (ecsn)


title: genomic DNA from peripheral white blood cells [8363800057_R03C01]

tag: study

tag: array


title: Colorectal adenocarcinoma tumor 477

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample477

tag: gender

tag: tissue

value: D

value: Wild-type


title: genomic DNA from peripheral white blood cells [8363800057_R02C02]

value: Female

tag: homa-ir

tag: waist circumference (cm)


title: B4A_Ascl1_Sox2_d2

description:
B4A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1

value: brain


title: Colorectal adenocarcinoma tumor 478

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample478

value: M

tag: disease state

value: Adenocarcinoma

tag: Stage


title: B5A_Ascl1_Sox2_d2

description:
B5A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: B6A_Ascl1_Sox2_d2

description:
B6A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: B9A_Ascl1_Sox2_d2

description:
B9A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: Colorectal adenocarcinoma tumor 476

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample476

value: B

tag: site


title: C10A_Ascl1_Sox2_d2

description:
C10A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 and Sox2 transduced


title: C11A_Ascl1_Sox2_d2

description:
C11A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A8A_Ascl1_Sox2_d2

description:
A8A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C12A_Ascl1_Sox2_d2

description:
C12A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800057_R01C02]

tag: Sex

value: RESMENA


title: Colorectal adenocarcinoma tumor 475

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample475

tag: estimated macrod2 status


title: C1A_Ascl1_Sox2_d2

description:
C1A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 474

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample474

tag: estimated chromosome segment number (ecsn)


title: genomic DNA from peripheral white blood cells [8363800057_R01C01]

tag: age

tag: study


title: C2A_Ascl1_Sox2_d2

description:
C2A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C3A_Ascl1_Sox2_d2

description:
C3A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C4A_Ascl1_Sox2_d2

description:
C4A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: B3A_Ascl1_Sox2_d2

description:
B3A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 472

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample472

tag: gender

value: Rectum


title: genomic DNA from peripheral white blood cells [8363800056_R05C02]

tag: array


title: genomic DNA from peripheral white blood cells [8363800057_R02C01]

value: Male

tag: homa-ir


title: genomic DNA from peripheral white blood cells [8363800056_R05C01]

tag: waist circumference (cm)


title: C7A_Ascl1_Sox2_d2

description:
C7A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 471

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample471

tag: tissue

tag: disease state


title: genomic DNA from peripheral white blood cells [8363800056_R04C02]


title: Colorectal adenocarcinoma tumor 473

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample473

tag: Stage


title: Colorectal adenocarcinoma tumor 470

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample470

value: F

value: Left


title: C8A_Ascl1_Sox2_d2

description:
C8A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: genomic DNA from peripheral white blood cells [8363800056_R04C01]


title: D11A_Ascl1_Sox2_d2

description:
D11A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: C6A_Ascl1_Sox2_d2

description:
C6A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: D10A_Ascl1_Sox2_d2

description:
D10A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D1A_Ascl1_Sox2_d2

description:
D1A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C9A_Ascl1_Sox2_d2

description:
C9A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 469

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample469

value: Colorectal adenocarcinoma

value: C

tag: site


title: D12A_Ascl1_Sox2_d2

description:
D12A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D2A_Ascl1_Sox2_d2

description:
D2A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D3A_Ascl1_Sox2_d2

description:
D3A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800056_R06C02]

tag: Sex


title: Colorectal adenocarcinoma tumor 468

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample468

tag: estimated macrod2 status

value: Heterozygous deletion

tag: estimated chromosome segment number (ecsn)


title: genomic DNA from peripheral white blood cells [8363800056_R03C01]

tag: age

tag: study


title: C5A_Ascl1_Sox2_d2

description:
C5A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 467

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample467

tag: gender


title: D5A_Ascl1_Sox2_d2

description:
D5A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D4A_Ascl1_Sox2_d2

description:
D4A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D6A_Ascl1_Sox2_d2

description:
D6A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: D7A_Ascl1_Sox2_d2

description:
D7A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800056_R02C02]

tag: array

tag: homa-ir


title: Colorectal adenocarcinoma tumor 466

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample466

tag: tissue

value: A

value: Right


title: Colorectal adenocarcinoma tumor 465

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample465

tag: disease state

value: Homozygous deletion


title: genomic DNA from peripheral white blood cells [8363800056_R02C01]

value: Female

tag: waist circumference (cm)


title: genomic DNA from peripheral white blood cells [8363800056_R01C02]


title: Colorectal adenocarcinoma tumor 464

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample464

tag: Stage


title: genomic DNA from peripheral white blood cells [8363800056_R03C02]


title: E1A_Ascl1_Sox2_d2

description:
E1A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

value: Donor 1

tag: tissue source

value: brain


title: genomic DNA from peripheral white blood cells [8363800056_R01C01]


title: D9A_Ascl1_Sox2_d2

description:
D9A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: Colorectal adenocarcinoma tumor 463

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample463

value: M

value: Adenocarcinoma

tag: site

value: Wild-type


title: E10A_Ascl1_Sox2_d2

description:
E10A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 and Sox2 transduced

tag: timepoint (days post infection)


title: E11A_Ascl1_Sox2_d2

description:
E11A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: E2A_Ascl1_Sox2_d2

description:
E2A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800025_R06C02]

tag: Sex

value: RESMENA


title: Colorectal adenocarcinoma tumor 462

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample462

value: B

tag: estimated macrod2 status

tag: estimated chromosome segment number (ecsn)


title: genomic DNA from peripheral white blood cells [8363800025_R06C01]

tag: age

tag: study


title: Colorectal adenocarcinoma tumor 461

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample461

tag: gender

value: F


title: genomic DNA from peripheral white blood cells [8363800025_R05C02]

value: Male

tag: array

tag: homa-ir


title: Colorectal adenocarcinoma tumor 460

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample460

tag: tissue

value: Colorectal adenocarcinoma

tag: disease state

value: Rectum


title: E4A_Ascl1_Sox2_d2

description:
E4A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800025_R05C01]

tag: waist circumference (cm)


title: Colorectal adenocarcinoma tumor 459

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample459

tag: Stage

value: D


title: E6A_Ascl1_Sox2_d2

description:
E6A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

tag: tissue source


title: E9A_Ascl1_Sox2_d2

description:
E9A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

tag: genotype/variation


title: F10A_Ascl1_Sox2_d2

description:
F10A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: E7A_Ascl1_Sox2_d2

description:
E7A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 458

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample458

tag: site

value: Heterozygous deletion


title: genomic DNA from peripheral white blood cells [8363800025_R04C02]

tag: Sex


title: F12A_Ascl1_Sox2_d2

description:
F12A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: E5A_Ascl1_Sox2_d2

description:
E5A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: E12A_Ascl1_Sox2_d2

description:
E12A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F1A_Ascl1_Sox2_d2

description:
F1A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800025_R04C01]


title: E3A_Ascl1_Sox2_d2

description:
E3A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 457

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample457

value: Right

tag: estimated macrod2 status

tag: estimated chromosome segment number (ecsn)


title: Colorectal adenocarcinoma tumor 456

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample456


title: F3A_Ascl1_Sox2_d2

description:
F3A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F4A_Ascl1_Sox2_d2

description:
F4A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F2A_Ascl1_Sox2_d2

description:
F2A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F5A_Ascl1_Sox2_d2

description:
F5A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800025_R03C02]

tag: age

tag: study


title: genomic DNA from peripheral white blood cells [8363800025_R03C01]

tag: array


title: Colorectal adenocarcinoma tumor 455

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample455

tag: gender


title: F6A_Ascl1_Sox2_d2

description:
F6A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800025_R02C02]

tag: homa-ir


title: Colorectal adenocarcinoma tumor 454

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample454

tag: tissue

tag: disease state

value: A


title: F8A_Ascl1_Sox2_d2

description:
F8A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: F9A_Ascl1_Sox2_d2

description:
F9A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8363800025_R02C01]

value: Female

tag: waist circumference (cm)


title: F11A_Ascl1_Sox2_d2

description:
F11A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

value: Donor 1


title: G12A_Ascl1_Sox2_d2

description:
G12A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: tissue source

value: brain


title: G10A_Ascl1_Sox2_d2

description:
G10A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type


title: G11A_Ascl1_Sox2_d2

description:
G11A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: genotype/variation


title: genomic DNA from peripheral white blood cells [8363800025_R01C02]


title: Colorectal adenocarcinoma tumor 451

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample451

value: M

tag: Stage


title: G1A_Ascl1_Sox2_d2

description:
G1A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: genomic DNA from peripheral white blood cells [8363800025_R01C01]

tag: Sex


title: G2A_Ascl1_Sox2_d2

description:
G2A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8359018119_R06C01]


title: G3A_Ascl1_Sox2_d2

description:
G3A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8359018119_R05C02]


title: F7A_Ascl1_Sox2_d2

description:
F7A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: G6A_Ascl1_Sox2_d2

description:
G6A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: G5A_Ascl1_Sox2_d2

description:
G5A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: G8A_Ascl1_Sox2_d2

description:
G8A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 452

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample452

value: Adenocarcinoma

tag: site

tag: estimated macrod2 status


title: Colorectal adenocarcinoma tumor 448

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample448

value: Left

tag: estimated chromosome segment number (ecsn)


title: H10A_Ascl1_Sox2_d2

description:
H10A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Ascl1 and Sox2 transduced


title: genomic DNA from peripheral white blood cells [8359018119_R04C02]

tag: age

tag: study

value: RESMENA


title: Colorectal adenocarcinoma tumor 449

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample449

tag: gender

value: B


title: Colorectal adenocarcinoma tumor 447

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample447

value: F

value: Wild-type


title: G9A_Ascl1_Sox2_d2

description:
G9A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: H11A_Ascl1_Sox2_d2

description:
H11A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 450

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample450

value: Colorectal adenocarcinoma


title: genomic DNA from peripheral white blood cells [8359018119_R04C01]

value: Male

tag: array

tag: homa-ir


title: G7A_Ascl1_Sox2_d2

description:
G7A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 453

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample453

tag: tissue

tag: disease state


title: H1A_Ascl1_Sox2_d2

description:
H1A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id


title: Colorectal adenocarcinoma tumor 446

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample446


title: genomic DNA from peripheral white blood cells [8359018119_R03C02]

tag: waist circumference (cm)


title: H2A_Ascl1_Sox2_d2

description:
H2A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: tissue source

tag: cell type


title: H3A_Ascl1_Sox2_d2

description:
H3A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: genotype/variation


title: Colorectal adenocarcinoma tumor 445

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample445

tag: Stage


title: Colorectal adenocarcinoma tumor 444

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample444


title: H9A_Ascl1_Sox2_d2

description:
H9A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: H6A_Ascl1_Sox2_d2

description:
H6A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8359018119_R05C01]

tag: Sex


title: genomic DNA from peripheral white blood cells [8359018119_R02C02]


title: A10A_Ascl1_Sox2_d21

description:
A10A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 443

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample443

tag: site

tag: estimated macrod2 status


title: Colorectal adenocarcinoma tumor 442

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample442

tag: estimated chromosome segment number (ecsn)


title: A11A_Ascl1_Sox2_d21

description:
A11A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A2A_Ascl1_Sox2_d21

description:
A2A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8359018119_R01C01]

tag: age

tag: study


title: H12A_Ascl1_Sox2_d2

description:
H12A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A12A_Ascl1_Sox2_d21

description:
A12A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: A3A_Ascl1_Sox2_d21

description:
A3A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [3999356081_R06C01]

value: PREDIMED

tag: array


title: A4A_Ascl1_Sox2_d21

description:
A4A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 440

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample440

tag: gender

value: C

value: Homozygous deletion


title: A9A_Ascl1_Sox2_d21

description:
A9A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [3999356081_R05C01]


title: B11A_Ascl1_Sox2_d21

description:
B11A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: B12A_Ascl1_Sox2_d21

description:
B12A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: H5A_Ascl1_Sox2_d2

description:
H5A_Ascl1Sox2d2
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [8359018119_R03C01]

tag: homa-ir


title: Colorectal adenocarcinoma tumor 439

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample439

tag: tissue

tag: disease state

value: Rectum


title: B1A_Ascl1_Sox2_d21

description:
B1A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id


title: Colorectal adenocarcinoma tumor 438

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample438

value: A

value: Right


title: B4A_Ascl1_Sox2_d21

description:
B4A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1

tag: tissue source

value: brain


title: Colorectal adenocarcinoma tumor 437

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample437

value: M

value: Adenocarcinoma

value: D


title: B5A_Ascl1_Sox2_d21

description:
B5A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type

value: Ascl1 and Sox2 transduced


title: genomic DNA from peripheral white blood cells [8359018119_R01C02]

value: RESMENA

tag: waist circumference (cm)


title: genomic DNA from peripheral white blood cells [3999356081_R01C02]


title: B7A_Ascl1_Sox2_d21

description:
B7A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: genotype/variation


title: Colorectal adenocarcinoma tumor 436

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample436

value: F

tag: Stage


title: genomic DNA from peripheral white blood cells [3999356079_R04C01]

tag: Sex


title: Colorectal adenocarcinoma tumor 441

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample441

value: B

tag: site

value: Wild-type


title: B8A_Ascl1_Sox2_d21

description:
B8A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: timepoint (days post infection)


title: A7A_Ascl1_Sox2_d21

description:
A7A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 435

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample435

value: Colorectal adenocarcinoma

value: Left

tag: estimated macrod2 status

tag: estimated chromosome segment number (ecsn)


title: B9A_Ascl1_Sox2_d21

description:
B9A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [3999356079_R03C01]

value: Female

tag: age

tag: study

value: PREDIMED


title: Colorectal adenocarcinoma tumor 434

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample434

tag: gender

value: C


title: C1A_Ascl1_Sox2_d21

description:
C1A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C12A_Ascl1_Sox2_d21

description:
C12A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 433

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample433


title: genomic DNA from peripheral white blood cells [3999356081_R03C01]

value: Male

tag: array


title: Colorectal adenocarcinoma tumor 432

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample432

tag: tissue

value: A

value: Right


title: genomic DNA from peripheral white blood cells [3999356079_R01C02]


title: C4A_Ascl1_Sox2_d21

description:
C4A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

value: Donor 1

value: brain


title: C5A_Ascl1_Sox2_d21

description:
C5A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: C2A_Ascl1_Sox2_d21

description:
C2A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: genomic DNA from peripheral white blood cells [3999356081_R02C02]


title: genomic DNA from peripheral white blood cells [3999356071_R06C02]


title: B6A_Ascl1_Sox2_d21

description:
B6A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv


title: Colorectal adenocarcinoma tumor 431

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample431

tag: disease state

value: Adenocarcinoma

value: Heterozygous deletion


title: genomic DNA from peripheral white blood cells [3999356071_R05C01]


title: C8A_Ascl1_Sox2_d21

description:
C8A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: donor id

value: Ascl1 and Sox2 transduced


title: D10A_Ascl1_Sox2_d21

description:
D10A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: tissue source


title: genomic DNA from peripheral white blood cells [3999356071_R04C02]


title: genomic DNA from peripheral white blood cells [3999356071_R04C01]


title: Colorectal adenocarcinoma tumor 428

description:
Genomic DNA extracted from colorectal tumors was genotyped using Infinium Human 610w-Quad chip Genotyping BeadChips (Illumina).
Sample428

value: M

value: Rectum


title: D4A_Ascl1_Sox2_d21

description:
D4A_Ascl1Sox2d21
Single cell transcriptome from pericytes or pericyte-derived induced neuronal cells
processed data file: data.master.csv

tag: cell type


title: genomic DNA from peripheral white blood cells [3999356079_R02C02]

tag: waist circumference (cm)