title: Rectal Normal Mucosa rep227

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Carcinoma rep284

status: Public on Jun 09 2018

type: RNA

city: Salt Lake City

first: Jennifer

last: Herrick

state: UT

address: 295 Chipeta Way

department: Internal Medicine

country: USA

institute: University of Utah

description: miRBase database (Release 19.0)

hyb_protocol: Labeled RNA was resuspended in 18ul nuclease free water, 4.5ul 10X GE Blocking agent (Agilent) and 22.5ul of 2X Hi-RPM Hybridization buffer were added (Agilent).  The 45ul hybridization solution was placed onto Agilent Human miRNA Microarray V19.0 Arrays (Cat# G4872A-046064). The microarray contains probes for 2006 unique human miRNAs. The miRNA array contains on average 30 replicates per probe sequence for a total of 60 000 unique features. Each glass slide contains 8x60K formatted arrays.  Agilent Sure Hybridization Chambers were utilized.  Hybridization was carried out at 55C for 20 hours in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed for 5 minutes at room temperature in GE Wash Buffer 1 (Agilent) followed by a 5 minute was in GE Wash Buffer 2 at 37C.  Slides were placed in a slide holder  for scanning.

scan_protocol: Slides were scanned on an Agilent SureScan microarray scanner model G2600D with auto detect forr 8x60K array slides.

data_processing:
Data were extracted from the scanned image using Agilent Feature Extract software v.11.5.1.1. Data were required to pass stringent QC parameters established by Agilent that included tests for excessive background fluorescence, excessive variation among probe sequence replicates on the array, and measures of the total gene signal on the array to assess low signal.
Genes with fewer than 0.5 mean reads across all samples were dropped. To minimize differences that could be attributed to the array, amount of RNA, location on array, or other factors that could erroneously influence expression, total gene signal was normalized by multiplying each sample by a scaling factor which was the median of the 75th percentiles of all the samples divided by the 75th percentile of each individual sample.

molecule: total RNA

organism: Homo sapiens

source_name: Paraffin embedded rectal carcinoma

label_protocol: 100 ng total RNA was labeled with Cy3 according to the manufacturer using the miRNA Complete Labeling and Hybe Kit from Agilent (p/n 5190-0456).  Labeled RNA was purified with the use of Micro Bio-Spin 6 columns (Bio-Rad) and dried.

extract_protocol: RNA (miRNA) was extracted from formalin-fixed paraffin embedded tissues.  Cells were dissected from 1–4 sequential sections on aniline blue stained slides using an H&E slide for reference. Total RNA containing miRNA was extracted, isolated, and purified using the RecoverAll Total Nucleic Acid isolation kit (Ambion), RNA yields were determined using a NanoDrop spectrophotometer.

tag: individual

value: Subject 710

tag: organ

value: Rectum

tag: tissue

value: Carcinoma

tag: Sex

value: Male

tag: site

value: Rectal

tag: ajcc stage


title: Rectal Carcinoma rep283

description: miRBase database (Release 19.0)

value: Subject 709


title: Rectal Normal Mucosa rep225

description: miRBase database (Release 19.0)

source_name: Paraffin embedded normal rectal mucosa


title: Rectal Carcinoma rep282

description: miRBase database (Release 19.0)

value: Subject 708

value: Female


title: Rectal Normal Mucosa rep224

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep222

description: miRBase database (Release 19.0)

value: Subject 705


title: Rectal Carcinoma rep281

description: miRBase database (Release 19.0)

value: Subject 707


title: Rectal Carcinoma rep277

description: miRBase database (Release 19.0)

value: Subject 703


title: Rectal Normal Mucosa rep221

description: miRBase database (Release 19.0)

value: Subject 704


title: Rectal Carcinoma rep278

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep220

description: miRBase database (Release 19.0)

value: Subject 702


title: Rectal Carcinoma rep280

description: miRBase database (Release 19.0)

value: Subject 706


title: Rectal Normal Mucosa rep218

description: miRBase database (Release 19.0)

value: Subject 700


title: Rectal Adenoma rep047

description: miRBase database (Release 19.0)

source_name: Paraffin embedded rectal adenoma

value: Subject 699

value: Adenoma


title: Rectal Carcinoma rep274

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep272

description: miRBase database (Release 19.0)

value: Subject 698


title: Rectal Carcinoma rep276

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Carcinoma rep275

description: miRBase database (Release 19.0)

value: Subject 701

value: Carcinoma


title: Rectal Carcinoma rep273

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Normal Mucosa rep219

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep226

description: miRBase database (Release 19.0)

value: Subject 710

value: Male


title: Rectal Adenoma rep046

description: miRBase database (Release 19.0)

value: Subject 696

value: Female


title: Rectal Carcinoma rep271

description: miRBase database (Release 19.0)

value: Subject 697


title: Rectal Carcinoma rep270

description: miRBase database (Release 19.0)


title: Rectal Hyperplastic Polyp rep002

description: miRBase database (Release 19.0)

source_name: Paraffin embedded rectal hyperplastic polyp

value: Hyperplastic Polyp


title: Rectal Normal Mucosa rep217

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep223

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep268

description: miRBase database (Release 19.0)

value: Subject 694


title: Rectal Carcinoma rep269

description: miRBase database (Release 19.0)

value: Subject 695


title: Rectal Carcinoma rep279

description: miRBase database (Release 19.0)

value: Subject 705


title: Rectal Normal Mucosa rep215

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep216

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep214

description: miRBase database (Release 19.0)

value: Subject 693


title: Rectal Adenoma rep045

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Carcinoma rep266

description: miRBase database (Release 19.0)

value: Subject 692

value: Unknown


title: Rectal Carcinoma rep260

description: miRBase database (Release 19.0)

value: Subject 686

value: Rectum


title: Rectal Normal Mucosa rep213

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Normal Mucosa rep212

description: miRBase database (Release 19.0)

value: Subject 691

value: Normal Mucosa


title: Rectal Adenoma rep044

description: miRBase database (Release 19.0)

value: Male


title: Rectal Carcinoma rep264

description: miRBase database (Release 19.0)

value: Subject 690

value: Carcinoma


title: Rectal Carcinoma rep265

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep211

description: miRBase database (Release 19.0)

value: Female


title: Rectal Carcinoma rep259

description: miRBase database (Release 19.0)

value: Subject 685


title: Rectal Normal Mucosa rep209

description: miRBase database (Release 19.0)

value: Subject 687


title: Rectal Normal Mucosa rep210

description: miRBase database (Release 19.0)

value: Subject 689


title: Rectal Carcinoma rep267

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep262

description: miRBase database (Release 19.0)

value: Subject 688


title: Rectal Carcinoma rep261

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep208

description: miRBase database (Release 19.0)

value: Subject 684


title: Rectal Carcinoma rep258

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep206

description: miRBase database (Release 19.0)

value: Subject 682


title: Rectal Carcinoma rep257

description: miRBase database (Release 19.0)

value: Subject 683


title: Rectal Normal Mucosa rep207

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep256

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep205

description: miRBase database (Release 19.0)

value: Subject 681


title: Rectal Carcinoma rep255

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep254

description: miRBase database (Release 19.0)

value: Subject 680


title: Rectal Carcinoma rep252

description: miRBase database (Release 19.0)

value: Subject 678

value: Rectum


title: Rectal Carcinoma rep253

description: miRBase database (Release 19.0)

value: Subject 679

value: Rectal


title: Rectal Normal Mucosa rep204

description: miRBase database (Release 19.0)

value: Normal Mucosa

value: Male


title: Rectal Carcinoma rep263

description: miRBase database (Release 19.0)

value: Carcinoma


title: Rectal Adenoma rep043

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Normal Mucosa rep202

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep251

description: miRBase database (Release 19.0)

value: Subject 677


title: Rectal Carcinoma rep250

description: miRBase database (Release 19.0)

value: Subject 676

value: Female


title: Rectal Adenoma rep042

description: miRBase database (Release 19.0)

value: Subject 674


title: Rectal Carcinoma rep248

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep198

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep246

description: miRBase database (Release 19.0)

value: Subject 672


title: Rectal Normal Mucosa rep196

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep201

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep199

description: miRBase database (Release 19.0)

value: Subject 675


title: Rectal Carcinoma rep249

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep200

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep247

description: miRBase database (Release 19.0)

value: Subject 673


title: Rectal Normal Mucosa rep203

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep197

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep195

description: miRBase database (Release 19.0)

value: Subject 670


title: Rectal Carcinoma rep244

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep194

description: miRBase database (Release 19.0)

value: Subject 669


title: Rectal Carcinoma rep243

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep242

description: miRBase database (Release 19.0)

value: Subject 668


title: Rectal Normal Mucosa rep193

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Normal Mucosa rep192

description: miRBase database (Release 19.0)

value: Subject 666


title: Rectal Normal Mucosa rep191

description: miRBase database (Release 19.0)

value: Subject 665

value: Rectal


title: Rectal Carcinoma rep241

description: miRBase database (Release 19.0)

value: Subject 667

value: Male


title: Rectal Carcinoma rep239

description: miRBase database (Release 19.0)

value: Subject 664

value: Carcinoma


title: Rectal Adenoma rep041

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Carcinoma rep240

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep190

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Adenoma rep040

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep245

description: miRBase database (Release 19.0)

value: Subject 671


title: Rectal Carcinoma rep237

description: miRBase database (Release 19.0)

value: Subject 662

value: Female

value: Unknown


title: Rectal Normal Mucosa rep189

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep238

description: miRBase database (Release 19.0)

value: Subject 663


title: Rectal Adenoma rep039

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep236

description: miRBase database (Release 19.0)

value: Subject 661


title: Rectal Adenoma rep038

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep186

description: miRBase database (Release 19.0)

value: Subject 659


title: Rectal Carcinoma rep235

description: miRBase database (Release 19.0)

value: Subject 660

value: Rectum


title: Rectal Carcinoma rep232

description: miRBase database (Release 19.0)

value: Subject 657


title: Rectal Carcinoma rep233

description: miRBase database (Release 19.0)

value: Subject 658

value: Rectal


title: Rectal Carcinoma rep231

description: miRBase database (Release 19.0)

value: Subject 656


title: Rectal Carcinoma rep230

description: miRBase database (Release 19.0)

value: Subject 655

value: Male


title: Rectal Adenoma rep037

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Carcinoma rep229

description: miRBase database (Release 19.0)

value: Subject 654

value: Carcinoma


title: Rectal Normal Mucosa rep183

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep182

description: miRBase database (Release 19.0)

value: Subject 653


title: Rectal Carcinoma rep227

description: miRBase database (Release 19.0)

value: Subject 652

value: Female


title: Rectal Carcinoma rep225

description: miRBase database (Release 19.0)

value: Subject 650


title: Rectal Normal Mucosa rep188

description: miRBase database (Release 19.0)

value: Subject 661


title: Rectal Normal Mucosa rep181

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep184

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep226

description: miRBase database (Release 19.0)

value: Subject 651


title: Rectal Normal Mucosa rep179

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Normal Mucosa rep187

description: miRBase database (Release 19.0)

value: Subject 660


title: Rectal Normal Mucosa rep180

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep234

description: miRBase database (Release 19.0)

value: Subject 659


title: Rectal Normal Mucosa rep178

description: miRBase database (Release 19.0)

value: Subject 649

value: Rectal


title: Rectal Carcinoma rep228

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep224

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep222

description: miRBase database (Release 19.0)

value: Subject 647


title: Rectal Normal Mucosa rep176

description: miRBase database (Release 19.0)

value: Male


title: Rectal Normal Mucosa rep185

description: miRBase database (Release 19.0)

value: Subject 658


title: Rectal Adenoma rep036

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Normal Mucosa rep175

description: miRBase database (Release 19.0)

value: Subject 646


title: Rectal Carcinoma rep220

description: miRBase database (Release 19.0)

value: Subject 645

value: Carcinoma


title: Rectal Carcinoma rep219

description: miRBase database (Release 19.0)

value: Subject 644


title: Rectal Normal Mucosa rep174

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Adenoma rep035

description: miRBase database (Release 19.0)

value: Female


title: Rectal Normal Mucosa rep173

description: miRBase database (Release 19.0)

value: Subject 643


title: Rectal Carcinoma rep218

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep172

description: miRBase database (Release 19.0)

value: Subject 642


title: Rectal Carcinoma rep217

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Carcinoma rep216

description: miRBase database (Release 19.0)

value: Subject 641


title: Rectal Carcinoma rep215

description: miRBase database (Release 19.0)

value: Subject 640


title: Rectal Carcinoma rep214

description: miRBase database (Release 19.0)

value: Subject 639


title: Rectal Carcinoma rep223

description: miRBase database (Release 19.0)

value: Subject 648

value: Rectal


title: Rectal Normal Mucosa rep171

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep177

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep034

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep170

description: miRBase database (Release 19.0)

value: Subject 638

value: Male


title: Rectal Carcinoma rep213

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep211

description: miRBase database (Release 19.0)

value: Subject 636


title: Rectal Carcinoma rep221

description: miRBase database (Release 19.0)

value: Subject 646


title: Rectal Carcinoma rep212

description: miRBase database (Release 19.0)

value: Subject 637


title: Rectal Normal Mucosa rep169

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep210

description: miRBase database (Release 19.0)

value: Subject 635

value: Carcinoma


title: Rectal Normal Mucosa rep168

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Carcinoma rep208

description: miRBase database (Release 19.0)

value: Subject 633

value: Female


title: Rectal Carcinoma rep209

description: miRBase database (Release 19.0)

value: Subject 634


title: Rectal Carcinoma rep207

description: miRBase database (Release 19.0)

value: Subject 632

value: Rectum


title: Rectal Carcinoma rep206

description: miRBase database (Release 19.0)

value: Subject 631


title: Rectal Carcinoma rep202

description: miRBase database (Release 19.0)

value: Subject 627


title: Rectal Normal Mucosa rep165

description: miRBase database (Release 19.0)

value: Subject 630


title: Rectal Carcinoma rep205

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Carcinoma rep203

description: miRBase database (Release 19.0)

value: Subject 628


title: Rectal Normal Mucosa rep162

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep204

description: miRBase database (Release 19.0)

value: Subject 629

value: Male


title: Rectal Normal Mucosa rep163

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep033

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Normal Mucosa rep167

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep200

description: miRBase database (Release 19.0)

value: Subject 624


title: Rectal Normal Mucosa rep160

description: miRBase database (Release 19.0)

value: Subject 625


title: Rectal Normal Mucosa rep157

description: miRBase database (Release 19.0)

value: Subject 621


title: Rectal Carcinoma rep201

description: miRBase database (Release 19.0)

value: Subject 626

value: Carcinoma


title: Rectal Normal Mucosa rep166

description: miRBase database (Release 19.0)

value: Normal Mucosa

value: Female


title: Rectal Carcinoma rep196

description: miRBase database (Release 19.0)

value: Subject 619


title: Rectal Normal Mucosa rep161

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Normal Mucosa rep159

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep195

description: miRBase database (Release 19.0)

value: Subject 618


title: Rectal Normal Mucosa rep155

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep197

description: miRBase database (Release 19.0)

value: Subject 620


title: Rectal Adenoma rep032

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep199

description: miRBase database (Release 19.0)

value: Subject 623


title: Rectal Normal Mucosa rep158

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Carcinoma rep198

description: miRBase database (Release 19.0)

value: Subject 622


title: Rectal Carcinoma rep193

description: miRBase database (Release 19.0)

value: Subject 616


title: Rectal Normal Mucosa rep156

description: miRBase database (Release 19.0)

value: Male


title: Rectal Normal Mucosa rep164

description: miRBase database (Release 19.0)

value: Subject 629


title: Rectal Carcinoma rep192

description: miRBase database (Release 19.0)

value: Subject 615


title: Rectal Normal Mucosa rep153

description: miRBase database (Release 19.0)

value: Subject 614


title: Rectal Normal Mucosa rep154

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep191

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep189

description: miRBase database (Release 19.0)

value: Subject 612


title: Rectal Normal Mucosa rep152

description: miRBase database (Release 19.0)

value: Subject 613


title: Rectal Adenoma rep031

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Normal Mucosa rep151

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Carcinoma rep188

description: miRBase database (Release 19.0)

value: Subject 611

value: Carcinoma

value: Female


title: Rectal Carcinoma rep194

description: miRBase database (Release 19.0)

value: Subject 617

value: Rectum


title: Rectal Carcinoma rep186

description: miRBase database (Release 19.0)

value: Subject 609


title: Rectal Carcinoma rep187

description: miRBase database (Release 19.0)

value: Subject 610

value: Rectal


title: Rectal Normal Mucosa rep150

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep149

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep185

description: miRBase database (Release 19.0)

value: Subject 608


title: Rectal Normal Mucosa rep148

description: miRBase database (Release 19.0)

value: Male


title: Rectal Normal Mucosa rep147

description: miRBase database (Release 19.0)

value: Subject 607


title: Rectal Carcinoma rep183

description: miRBase database (Release 19.0)

value: Subject 606


title: Rectal Normal Mucosa rep146

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep182

description: miRBase database (Release 19.0)

value: Subject 605


title: Rectal Adenoma rep030

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep184

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep181

description: miRBase database (Release 19.0)

value: Subject 604


title: Rectal Carcinoma rep179

description: miRBase database (Release 19.0)

value: Subject 602


title: Rectal Normal Mucosa rep145

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep190

description: miRBase database (Release 19.0)

value: Subject 613


title: Rectal Normal Mucosa rep144

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Carcinoma rep180

description: miRBase database (Release 19.0)

value: Subject 603


title: Rectal Adenoma rep029

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Adenoma rep028

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep142

description: miRBase database (Release 19.0)

value: Subject 601

value: Female


title: Rectal Carcinoma rep178

description: miRBase database (Release 19.0)

value: Rectum

value: Carcinoma


title: Rectal Normal Mucosa rep143

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep141

description: miRBase database (Release 19.0)

value: Subject 600


title: Rectal Carcinoma rep176

description: miRBase database (Release 19.0)

value: Subject 599

value: Rectal


title: Rectal Normal Mucosa rep139

description: miRBase database (Release 19.0)

value: Subject 598

value: Male


title: Rectal Carcinoma rep174

description: miRBase database (Release 19.0)

value: Subject 597


title: Rectal Normal Mucosa rep140

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep175

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep177

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep173

description: miRBase database (Release 19.0)

value: Subject 596


title: Rectal Normal Mucosa rep137

description: miRBase database (Release 19.0)

value: Subject 595


title: Rectal Normal Mucosa rep138

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep172

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep027

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep171

description: miRBase database (Release 19.0)

value: Subject 594


title: Rectal Normal Mucosa rep136

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep026

description: miRBase database (Release 19.0)

value: Subject 593


title: Rectal Carcinoma rep169

description: miRBase database (Release 19.0)

value: Subject 592


title: Rectal Carcinoma rep170

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep135

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep134

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep167

description: miRBase database (Release 19.0)

value: Subject 590


title: Rectal Carcinoma rep168

description: miRBase database (Release 19.0)

value: Subject 591


title: Rectal Normal Mucosa rep133

description: miRBase database (Release 19.0)

value: Female


title: Rectal Adenoma rep025

description: miRBase database (Release 19.0)

value: Rectum

value: Adenoma


title: Rectal Normal Mucosa rep132

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep131

description: miRBase database (Release 19.0)

value: Subject 588


title: Rectal Carcinoma rep163

description: miRBase database (Release 19.0)

value: Subject 586

value: Carcinoma


title: Rectal Normal Mucosa rep130

description: miRBase database (Release 19.0)

value: Subject 587

value: Rectal


title: Rectal Carcinoma rep164

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep165

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep129

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep166

description: miRBase database (Release 19.0)

value: Subject 589


title: Rectal Serrated Sessile Polyp rep001

description: miRBase database (Release 19.0)

source_name: Paraffin embedded rectal serrated sessile polyp

value: Serrated Sessile Polyp


title: Rectal Carcinoma rep162

description: miRBase database (Release 19.0)

value: Subject 585

value: Male


title: Rectal Normal Mucosa rep128

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep024

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep160

description: miRBase database (Release 19.0)

value: Subject 583


title: Rectal Normal Mucosa rep127

description: miRBase database (Release 19.0)

value: Subject 584


title: Rectal Normal Mucosa rep126

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep125

description: miRBase database (Release 19.0)

value: Subject 582


title: Rectal Carcinoma rep156

description: miRBase database (Release 19.0)

value: Subject 579


title: Rectal Carcinoma rep158

description: miRBase database (Release 19.0)

value: Subject 581

value: Female


title: Rectal Adenoma rep023

description: miRBase database (Release 19.0)

value: Rectum

value: Adenoma


title: Rectal Carcinoma rep157

description: miRBase database (Release 19.0)

value: Subject 580


title: Rectal Carcinoma rep152

description: miRBase database (Release 19.0)

value: Subject 575

value: Carcinoma


title: Rectal Normal Mucosa rep124

description: miRBase database (Release 19.0)

value: Subject 576

value: Rectal


title: Rectal Normal Mucosa rep122

description: miRBase database (Release 19.0)

value: Subject 574


title: Rectal Carcinoma rep151

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep153

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep155

description: miRBase database (Release 19.0)

value: Subject 578


title: Rectal Carcinoma rep154

description: miRBase database (Release 19.0)

value: Subject 577


title: Rectal Normal Mucosa rep123

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep150

description: miRBase database (Release 19.0)

value: Subject 573


title: Rectal Normal Mucosa rep121

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep120

description: miRBase database (Release 19.0)

value: Subject 572

value: Male


title: Rectal Adenoma rep022

description: miRBase database (Release 19.0)

value: Subject 570


title: Rectal Carcinoma rep148

description: miRBase database (Release 19.0)

value: Subject 571


title: Rectal Carcinoma rep149

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep161

description: miRBase database (Release 19.0)

value: Subject 584


title: Rectal Carcinoma rep146

description: miRBase database (Release 19.0)

value: Subject 569


title: Rectal Normal Mucosa rep117

description: miRBase database (Release 19.0)

value: Subject 567

value: Rectum

value: Normal Mucosa


title: Rectal Carcinoma rep142

description: miRBase database (Release 19.0)

value: Subject 565

value: Female


title: Rectal Normal Mucosa rep116

description: miRBase database (Release 19.0)

value: Subject 566


title: Rectal Carcinoma rep159

description: miRBase database (Release 19.0)

value: Subject 582

value: Carcinoma

value: Rectal


title: Rectal Carcinoma rep141

description: miRBase database (Release 19.0)

value: Subject 564


title: Rectal Carcinoma rep147

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep114

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep136

description: miRBase database (Release 19.0)

value: Subject 559


title: Rectal Carcinoma rep137

description: miRBase database (Release 19.0)

value: Subject 560


title: Rectal Normal Mucosa rep118

description: miRBase database (Release 19.0)

value: Male


title: Rectal Adenoma rep021

description: miRBase database (Release 19.0)

value: Subject 562

value: Adenoma


title: Rectal Carcinoma rep140

description: miRBase database (Release 19.0)

value: Subject 563


title: Rectal Normal Mucosa rep119

description: miRBase database (Release 19.0)

value: Subject 571


title: Rectal Normal Mucosa rep113

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep139

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep115

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep135

description: miRBase database (Release 19.0)

value: Subject 558

value: Unknown


title: Rectal Normal Mucosa rep112

description: miRBase database (Release 19.0)

value: Rectum

value: Normal Mucosa


title: Rectal Carcinoma rep138

description: miRBase database (Release 19.0)

value: Subject 561


title: Rectal Carcinoma rep145

description: miRBase database (Release 19.0)

value: Subject 568


title: Rectal Carcinoma rep144

description: miRBase database (Release 19.0)

value: Subject 567


title: Rectal Normal Mucosa rep111

description: miRBase database (Release 19.0)

value: Subject 557


title: Rectal Adenoma rep020

description: miRBase database (Release 19.0)

value: Subject 556

value: Female

value: Rectal


title: Rectal Carcinoma rep133

description: miRBase database (Release 19.0)

value: Carcinoma


title: Rectal Carcinoma rep134

description: miRBase database (Release 19.0)

value: Male


title: Rectal Carcinoma rep143

description: miRBase database (Release 19.0)

value: Subject 566


title: Rectal Normal Mucosa rep109

description: miRBase database (Release 19.0)

value: Subject 555


title: Rectal Normal Mucosa rep107

description: miRBase database (Release 19.0)

value: Subject 553


title: Rectal Carcinoma rep131

description: miRBase database (Release 19.0)

value: Subject 554


title: Rectal Normal Mucosa rep108

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep130

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep019

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Normal Mucosa rep110

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep132

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep099

description: miRBase database (Release 19.0)

value: Subject 544


title: Rectal Carcinoma rep121

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Carcinoma rep127

description: miRBase database (Release 19.0)

value: Subject 550


title: Rectal Carcinoma rep128

description: miRBase database (Release 19.0)

value: Subject 551


title: Rectal Normal Mucosa rep105

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep100

description: miRBase database (Release 19.0)

value: Subject 545


title: Rectal Normal Mucosa rep101

description: miRBase database (Release 19.0)

value: Subject 546


title: Rectal Carcinoma rep123

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep103

description: miRBase database (Release 19.0)

value: Subject 548


title: Rectal Carcinoma rep122

description: miRBase database (Release 19.0)

value: Female


title: Rectal Carcinoma rep124

description: miRBase database (Release 19.0)

value: Subject 547

value: Rectal


title: Rectal Carcinoma rep126

description: miRBase database (Release 19.0)

value: Subject 549

value: Carcinoma

value: Male


title: Rectal Normal Mucosa rep106

description: miRBase database (Release 19.0)

value: Subject 552


title: Rectal Normal Mucosa rep098

description: miRBase database (Release 19.0)

value: Subject 543


title: Rectal Carcinoma rep120

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep129

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep104

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep102

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep125

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep018

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Normal Mucosa rep097

description: miRBase database (Release 19.0)

value: Subject 542


title: Rectal Normal Mucosa rep096

description: miRBase database (Release 19.0)

value: Subject 539

value: Rectum


title: Rectal Carcinoma rep115

description: miRBase database (Release 19.0)

value: Subject 538


title: Rectal Carcinoma rep119

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep118

description: miRBase database (Release 19.0)

value: Subject 541


title: Rectal Carcinoma rep116

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep095

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Carcinoma rep114

description: miRBase database (Release 19.0)

value: Subject 537


title: Rectal Carcinoma rep113

description: miRBase database (Release 19.0)

value: Subject 536


title: Rectal Normal Mucosa rep090

description: miRBase database (Release 19.0)

value: Subject 530

value: Female


title: Rectal Carcinoma rep112

description: miRBase database (Release 19.0)

value: Subject 535

value: Rectal


title: Rectal Carcinoma rep107

description: miRBase database (Release 19.0)

value: Carcinoma


title: Rectal Normal Mucosa rep094

description: miRBase database (Release 19.0)

value: Male


title: Rectal Carcinoma rep106

description: miRBase database (Release 19.0)

value: Subject 529


title: Rectal Normal Mucosa rep091

description: miRBase database (Release 19.0)

value: Subject 531


title: Rectal Carcinoma rep117

description: miRBase database (Release 19.0)

value: Subject 540


title: Rectal Normal Mucosa rep092

description: miRBase database (Release 19.0)

value: Subject 532


title: Rectal Carcinoma rep105

description: miRBase database (Release 19.0)

value: Subject 528


title: Rectal Normal Mucosa rep088

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Normal Mucosa rep087

description: miRBase database (Release 19.0)

value: Subject 527


title: Rectal Normal Mucosa rep086

description: miRBase database (Release 19.0)

value: Subject 526


title: Rectal Adenoma rep017

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Adenoma rep016

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep104

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep089

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Carcinoma rep109

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep111

description: miRBase database (Release 19.0)

value: Subject 534


title: Rectal Carcinoma rep110

description: miRBase database (Release 19.0)

value: Subject 533


title: Rectal Normal Mucosa rep093

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep085

description: miRBase database (Release 19.0)

value: Subject 525

value: Female


title: Rectal Carcinoma rep102

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Carcinoma rep101

description: miRBase database (Release 19.0)

value: Subject 524

value: Carcinoma


title: Rectal Normal Mucosa rep084

description: miRBase database (Release 19.0)

value: Male


title: Rectal Carcinoma rep099

description: miRBase database (Release 19.0)

value: Subject 522


title: Rectal Carcinoma rep100

description: miRBase database (Release 19.0)

value: Subject 523


title: Rectal Normal Mucosa rep083

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep108

description: miRBase database (Release 19.0)

value: Subject 531


title: Rectal Adenoma rep015

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep096

description: miRBase database (Release 19.0)

value: Subject 519


title: Rectal Carcinoma rep103

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Carcinoma rep097

description: miRBase database (Release 19.0)

value: Subject 520


title: Rectal Normal Mucosa rep082

description: miRBase database (Release 19.0)

value: Subject 521


title: Rectal Carcinoma rep095

description: miRBase database (Release 19.0)

value: Subject 518


title: Rectal Normal Mucosa rep081

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep080

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep094

description: miRBase database (Release 19.0)

value: Subject 517


title: Rectal Carcinoma rep085

description: miRBase database (Release 19.0)

value: Subject 508


title: Rectal Carcinoma rep086

description: miRBase database (Release 19.0)

value: Subject 509


title: Rectal Carcinoma rep098

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep073

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep088

description: miRBase database (Release 19.0)

value: Subject 511


title: Rectal Normal Mucosa rep076

description: miRBase database (Release 19.0)

value: Subject 513

value: Female

value: Rectal


title: Rectal Carcinoma rep090

description: miRBase database (Release 19.0)

value: Carcinoma


title: Rectal Normal Mucosa rep074

description: miRBase database (Release 19.0)

value: Subject 510

value: Male


title: Rectal Normal Mucosa rep072

description: miRBase database (Release 19.0)

value: Subject 507


title: Rectal Carcinoma rep087

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep071

description: miRBase database (Release 19.0)

value: Subject 506


title: Rectal Carcinoma rep083

description: miRBase database (Release 19.0)

value: Subject 505

value: Rectum


title: Rectal Carcinoma rep089

description: miRBase database (Release 19.0)

value: Subject 512


title: Rectal Normal Mucosa rep075

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep091

description: miRBase database (Release 19.0)

value: Subject 514


title: Rectal Normal Mucosa rep077

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep078

description: miRBase database (Release 19.0)

value: Subject 515


title: Rectal Carcinoma rep084

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep079

description: miRBase database (Release 19.0)

value: Subject 516


title: Rectal Carcinoma rep092

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep070

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep069

description: miRBase database (Release 19.0)

value: Subject 504


title: Rectal Adenoma rep014

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Carcinoma rep082

description: miRBase database (Release 19.0)

value: Unknown


title: Rectal Carcinoma rep093

description: miRBase database (Release 19.0)

value: Female


title: Rectal Carcinoma rep080

description: miRBase database (Release 19.0)

value: Subject 502

value: Rectal


title: Rectal Normal Mucosa rep067

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep068

description: miRBase database (Release 19.0)

value: Subject 503


title: Rectal Carcinoma rep081

description: miRBase database (Release 19.0)

value: Carcinoma


title: Rectal Carcinoma rep079

description: miRBase database (Release 19.0)

value: Subject 501


title: Rectal Normal Mucosa rep066

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep065

description: miRBase database (Release 19.0)

value: Subject 500

value: Male


title: Rectal Carcinoma rep078

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Carcinoma rep077

description: miRBase database (Release 19.0)

value: Subject 499


title: Rectal Carcinoma rep075

description: miRBase database (Release 19.0)

value: Subject 497


title: Rectal Carcinoma rep074

description: miRBase database (Release 19.0)

value: Subject 496


title: Rectal Normal Mucosa rep062

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep061

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep076

description: miRBase database (Release 19.0)

value: Subject 498


title: Rectal Normal Mucosa rep058

description: miRBase database (Release 19.0)

value: Subject 491


title: Rectal Normal Mucosa rep059

description: miRBase database (Release 19.0)

value: Subject 494


title: Rectal Normal Mucosa rep063

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep057

description: miRBase database (Release 19.0)

value: Subject 490


title: Rectal Normal Mucosa rep056

description: miRBase database (Release 19.0)

value: Subject 489

value: Female


title: Rectal Adenoma rep013

description: miRBase database (Release 19.0)

value: Adenoma

value: Rectal


title: Rectal Carcinoma rep073

description: miRBase database (Release 19.0)

value: Subject 495

value: Carcinoma


title: Rectal Normal Mucosa rep060

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep071

description: miRBase database (Release 19.0)

value: Subject 493


title: Rectal Carcinoma rep069

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep064

description: miRBase database (Release 19.0)

value: Subject 486

value: Male


title: Rectal Carcinoma rep065

description: miRBase database (Release 19.0)

value: Subject 487

value: Rectum


title: Rectal Carcinoma rep070

description: miRBase database (Release 19.0)

value: Subject 492


title: Rectal Carcinoma rep068

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep072

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep067

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep054

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Carcinoma rep063

description: miRBase database (Release 19.0)

value: Subject 485


title: Rectal Carcinoma rep066

description: miRBase database (Release 19.0)

value: Subject 488


title: Rectal Normal Mucosa rep053

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep052

description: miRBase database (Release 19.0)

value: Subject 484


title: Rectal Carcinoma rep061

description: miRBase database (Release 19.0)

value: Subject 483


title: Rectal Carcinoma rep062

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep064

description: miRBase database (Release 19.0)

value: Subject 499


title: Rectal Normal Mucosa rep051

description: miRBase database (Release 19.0)

value: Subject 482


title: Rectal Carcinoma rep059

description: miRBase database (Release 19.0)

value: Subject 481

value: Female


title: Rectal Carcinoma rep056

description: miRBase database (Release 19.0)

value: Subject 478

value: Rectal


title: Rectal Adenoma rep012

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Carcinoma rep055

description: miRBase database (Release 19.0)

value: Subject 477

value: Carcinoma


title: Rectal Carcinoma rep053

description: miRBase database (Release 19.0)

value: Subject 474


title: Rectal Normal Mucosa rep048

description: miRBase database (Release 19.0)

value: Subject 479

value: Rectum

value: Male


title: Rectal Normal Mucosa rep047

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep046

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep045

description: miRBase database (Release 19.0)

value: Subject 476


title: Rectal Normal Mucosa rep049

description: miRBase database (Release 19.0)

value: Subject 480


title: Rectal Adenoma rep011

description: miRBase database (Release 19.0)

value: Subject 475


title: Rectal Carcinoma rep054

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep050

description: miRBase database (Release 19.0)

value: Subject 471


title: Rectal Normal Mucosa rep055

description: miRBase database (Release 19.0)

value: Subject 488


title: Rectal Normal Mucosa rep050

description: miRBase database (Release 19.0)

value: Subject 481


title: Rectal Adenoma rep009

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep049

description: miRBase database (Release 19.0)

value: Subject 470

value: Female


title: Rectal Carcinoma rep057

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Carcinoma rep058

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep060

description: miRBase database (Release 19.0)

value: Subject 482


title: Rectal Carcinoma rep048

description: miRBase database (Release 19.0)

value: Subject 469


title: Rectal Normal Mucosa rep040

description: miRBase database (Release 19.0)

value: Subject 468


title: Rectal Carcinoma rep046

description: miRBase database (Release 19.0)

value: Subject 467

value: Carcinoma


title: Rectal Carcinoma rep051

description: miRBase database (Release 19.0)

value: Subject 472

value: Rectum


title: Rectal Carcinoma rep047

description: miRBase database (Release 19.0)

value: Male


title: Rectal Normal Mucosa rep041

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep043

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep010

description: miRBase database (Release 19.0)

value: Subject 474

value: Adenoma


title: Rectal Carcinoma rep052

description: miRBase database (Release 19.0)

value: Subject 473


title: Rectal Normal Mucosa rep044

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep039

description: miRBase database (Release 19.0)

value: Subject 466


title: Rectal Carcinoma rep041

description: miRBase database (Release 19.0)

value: Subject 462


title: Rectal Normal Mucosa rep042

description: miRBase database (Release 19.0)

value: Subject 470


title: Rectal Carcinoma rep045

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep038

description: miRBase database (Release 19.0)

value: Subject 459


title: Rectal Normal Mucosa rep038

description: miRBase database (Release 19.0)

value: Subject 465

value: Female

value: Rectal


title: Rectal Carcinoma rep043

description: miRBase database (Release 19.0)

value: Subject 464


title: Rectal Adenoma rep008

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep034

description: miRBase database (Release 19.0)

value: Subject 461


title: Rectal Adenoma rep007

description: miRBase database (Release 19.0)

value: Subject 458


title: Rectal Normal Mucosa rep033

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep037

description: miRBase database (Release 19.0)

value: Carcinoma


title: Rectal Carcinoma rep040

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Carcinoma rep044

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep036

description: miRBase database (Release 19.0)

value: Subject 463

value: Male


title: Rectal Carcinoma rep042

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep036

description: miRBase database (Release 19.0)

value: Subject 457


title: Rectal Normal Mucosa rep037

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Carcinoma rep039

description: miRBase database (Release 19.0)

value: Subject 460


title: Rectal Normal Mucosa rep032

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep034

description: miRBase database (Release 19.0)

value: Subject 455


title: Rectal Normal Mucosa rep030

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep031

description: miRBase database (Release 19.0)

value: Subject 456


title: Rectal Carcinoma rep032

description: miRBase database (Release 19.0)

value: Subject 453


title: Rectal Carcinoma rep031

description: miRBase database (Release 19.0)

value: Subject 452


title: Rectal Carcinoma rep033

description: miRBase database (Release 19.0)

value: Subject 454


title: Rectal Normal Mucosa rep028

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep029

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep027

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep006

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Carcinoma rep030

description: miRBase database (Release 19.0)

value: Subject 451

value: Female

value: Rectal


title: Rectal Normal Mucosa rep026

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep028

description: miRBase database (Release 19.0)

value: Subject 449


title: Rectal Hyperplastic Polyp rep001

description: miRBase database (Release 19.0)

value: Hyperplastic Polyp


title: Rectal Normal Mucosa rep025

description: miRBase database (Release 19.0)

value: Subject 450

value: Rectum


title: Rectal Carcinoma rep035

description: miRBase database (Release 19.0)

value: Carcinoma

value: Male


title: Rectal Carcinoma rep027

description: miRBase database (Release 19.0)

value: Subject 448


title: Rectal Normal Mucosa rep021

description: miRBase database (Release 19.0)

value: Subject 444

value: Normal Mucosa


title: Rectal Carcinoma rep022

description: miRBase database (Release 19.0)

value: Subject 443


title: Rectal Normal Mucosa rep035

description: miRBase database (Release 19.0)

value: Subject 462


title: Rectal Normal Mucosa rep020

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep023

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep024

description: miRBase database (Release 19.0)

value: Subject 445


title: Rectal Carcinoma rep025

description: miRBase database (Release 19.0)

value: Subject 446


title: Rectal Carcinoma rep026

description: miRBase database (Release 19.0)

value: Subject 447


title: Rectal Normal Mucosa rep022

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep023

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep019

description: miRBase database (Release 19.0)

value: Subject 442


title: Rectal Normal Mucosa rep018

description: miRBase database (Release 19.0)

value: Subject 441


title: Rectal Carcinoma rep020

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Adenoma rep005

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Carcinoma rep019

description: miRBase database (Release 19.0)

value: Subject 440

value: Female


title: Rectal Normal Mucosa rep017

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Carcinoma rep029

description: miRBase database (Release 19.0)

value: Subject 450

value: Carcinoma


title: Rectal Normal Mucosa rep024

description: miRBase database (Release 19.0)

value: Subject 449


title: Rectal Normal Mucosa rep016

description: miRBase database (Release 19.0)

value: Subject 439

value: Male


title: Rectal Carcinoma rep018

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep017

description: miRBase database (Release 19.0)

value: Subject 438


title: Rectal Normal Mucosa rep015

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Adenoma rep004

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep016

description: miRBase database (Release 19.0)

value: Subject 437


title: Rectal Normal Mucosa rep014

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep015

description: miRBase database (Release 19.0)

value: Subject 436


title: Rectal Carcinoma rep011

description: miRBase database (Release 19.0)

value: Subject 432


title: Rectal Normal Mucosa rep012

description: miRBase database (Release 19.0)

value: Subject 435


title: Rectal Normal Mucosa rep010

description: miRBase database (Release 19.0)

value: Subject 433


title: Rectal Carcinoma rep014

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Carcinoma rep021

description: miRBase database (Release 19.0)

value: Subject 442


title: Rectal Carcinoma rep013

description: miRBase database (Release 19.0)

value: Subject 434


title: Rectal Normal Mucosa rep011

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep013

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep009

description: miRBase database (Release 19.0)

value: Female


title: Rectal Normal Mucosa rep008

description: miRBase database (Release 19.0)

value: Subject 431

value: Rectum


title: Rectal Carcinoma rep012

description: miRBase database (Release 19.0)

value: Carcinoma


title: Rectal Carcinoma rep010

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep007

description: miRBase database (Release 19.0)

value: Subject 430


title: Rectal Carcinoma rep009

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep003

description: miRBase database (Release 19.0)

value: Subject 426

value: Adenoma


title: Rectal Carcinoma rep004

description: miRBase database (Release 19.0)

value: Subject 425


title: Rectal Carcinoma rep008

description: miRBase database (Release 19.0)

value: Subject 429


title: Rectal Normal Mucosa rep006

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep005

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep006

description: miRBase database (Release 19.0)

value: Subject 427


title: Rectal Normal Mucosa rep004

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep007

description: miRBase database (Release 19.0)

value: Subject 428

value: Male


title: Rectal Carcinoma rep005

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep003

description: miRBase database (Release 19.0)

value: Subject 424


title: Rectal Normal Mucosa rep003

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Adenoma rep001

description: miRBase database (Release 19.0)

value: Subject 423


title: Rectal Normal Mucosa rep002

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep002

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep002

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep001

description: miRBase database (Release 19.0)

value: Subject 422


title: Colon Carcinoma rep411

description: miRBase database (Release 19.0)

source_name: Paraffin embedded colon carcinoma

value: Subject 421

value: Colon

value: Female

value: Proximal


title: Colon Carcinoma rep410

description: miRBase database (Release 19.0)

value: Subject 420

value: Carcinoma


title: Colon Adenoma rep051

description: miRBase database (Release 19.0)

source_name: Paraffin embedded colon adenoma

value: Subject 419

value: Adenoma

value: Distal


title: Colon Normal Mucosa rep381

description: miRBase database (Release 19.0)

source_name: Paraffin embedded normal colon mucosa

value: Normal Mucosa


title: Colon Normal Mucosa rep380

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep408

description: miRBase database (Release 19.0)

value: Subject 418


title: Colon Carcinoma rep409

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep379

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep001

description: miRBase database (Release 19.0)

value: Rectum


title: Colon Normal Mucosa rep377

description: miRBase database (Release 19.0)

value: Subject 416


title: Colon Carcinoma rep405

description: miRBase database (Release 19.0)

value: Subject 415


title: Colon Carcinoma rep406

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep378

description: miRBase database (Release 19.0)

value: Subject 417

value: Male


title: Colon Normal Mucosa rep376

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep374

description: miRBase database (Release 19.0)

value: Subject 413


title: Colon Carcinoma rep402

description: miRBase database (Release 19.0)

value: Subject 411


title: Colon Normal Mucosa rep373

description: miRBase database (Release 19.0)

value: Subject 412

value: Colon


title: Colon Carcinoma rep403

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Normal Mucosa rep375

description: miRBase database (Release 19.0)

value: Subject 414


title: Colon Normal Mucosa rep372

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep404

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Carcinoma rep401

description: miRBase database (Release 19.0)

value: Subject 410


title: Colon Adenoma rep049

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Normal Mucosa rep371

description: miRBase database (Release 19.0)

value: Distal


title: Colon Carcinoma rep407

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep370

description: miRBase database (Release 19.0)

value: Subject 409

value: Normal Mucosa


title: Colon Normal Mucosa rep367

description: miRBase database (Release 19.0)

value: Subject 406

value: Female


title: Colon Carcinoma rep395

description: miRBase database (Release 19.0)

value: Subject 404


title: Colon Carcinoma rep396

description: miRBase database (Release 19.0)

value: Subject 405


title: Colon Normal Mucosa rep365

description: miRBase database (Release 19.0)

value: Subject 403


title: Colon Carcinoma rep398

description: miRBase database (Release 19.0)

value: Subject 407

value: Male


title: Colon Carcinoma rep393

description: miRBase database (Release 19.0)

value: Subject 402


title: Colon Normal Mucosa rep366

description: miRBase database (Release 19.0)

value: Colon


title: Colon Adenoma rep050

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Carcinoma rep394

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep368

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep369

description: miRBase database (Release 19.0)

value: Subject 408


title: Colon Normal Mucosa rep364

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep397

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Normal Mucosa rep363

description: miRBase database (Release 19.0)

value: Subject 401


title: Colon Carcinoma rep400

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep388

description: miRBase database (Release 19.0)

value: Subject 397


title: Colon Carcinoma rep390

description: miRBase database (Release 19.0)

value: Subject 399


title: Colon Carcinoma rep391

description: miRBase database (Release 19.0)

value: Subject 400


title: Colon Normal Mucosa rep362

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep359

description: miRBase database (Release 19.0)

value: Subject 396

value: Distal


title: Colon Normal Mucosa rep360

description: miRBase database (Release 19.0)

value: Female


title: Colon Carcinoma rep399

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep387

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep361

description: miRBase database (Release 19.0)

value: Subject 398


title: Colon Carcinoma rep389

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep386

description: miRBase database (Release 19.0)

value: Subject 395


title: Colon Carcinoma rep385

description: miRBase database (Release 19.0)

value: Subject 394


title: Colon Normal Mucosa rep357

description: miRBase database (Release 19.0)

value: Male


title: Colon Normal Mucosa rep356

description: miRBase database (Release 19.0)

value: Subject 393


title: Colon Carcinoma rep392

description: miRBase database (Release 19.0)

value: Colon


title: Colon Carcinoma rep383

description: miRBase database (Release 19.0)

value: Subject 392


title: Colon Carcinoma rep382

description: miRBase database (Release 19.0)

value: Subject 391

value: Proximal


title: Colon Normal Mucosa rep353

description: miRBase database (Release 19.0)

value: Subject 390


title: Colon Carcinoma rep381

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Normal Mucosa rep354

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep339

description: miRBase database (Release 19.0)

value: Subject 766

value: Rectum

value: Rectal

value: Unknown


title: Rectal Carcinoma rep338

description: miRBase database (Release 19.0)

value: Subject 765


title: Rectal Carcinoma rep337

description: miRBase database (Release 19.0)

value: Subject 764

value: Female


title: Rectal Normal Mucosa rep268

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Rectal Normal Mucosa rep267

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep335

description: miRBase database (Release 19.0)

value: Subject 762


title: Rectal Normal Mucosa rep265

description: miRBase database (Release 19.0)

value: Subject 763

value: Male


title: Colon Normal Mucosa rep358

description: miRBase database (Release 19.0)

value: Subject 395

value: Colon

value: Distal


title: Rectal Carcinoma rep336

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep266

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep264

description: miRBase database (Release 19.0)

value: Subject 759


title: Rectal Carcinoma rep334

description: miRBase database (Release 19.0)

value: Subject 761


title: Rectal Carcinoma rep331

description: miRBase database (Release 19.0)

value: Subject 758

value: Carcinoma


title: Rectal Carcinoma rep333

description: miRBase database (Release 19.0)

value: Subject 760

value: Rectum


title: Rectal Carcinoma rep332

description: miRBase database (Release 19.0)

value: Rectal

value: Unknown


title: Colon Carcinoma rep384

description: miRBase database (Release 19.0)

value: Subject 393

value: Proximal


title: Rectal Adenoma rep052

description: miRBase database (Release 19.0)

value: Subject 765

value: Adenoma


title: Colon Normal Mucosa rep355

description: miRBase database (Release 19.0)

value: Subject 392

value: Normal Mucosa

value: Female


title: Rectal Normal Mucosa rep262

description: miRBase database (Release 19.0)

value: Subject 756

value: Male


title: Rectal Carcinoma rep329

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep330

description: miRBase database (Release 19.0)

value: Subject 757


title: Rectal Normal Mucosa rep263

description: miRBase database (Release 19.0)


title: Rectal Adenoma rep051

description: miRBase database (Release 19.0)

value: Subject 755


title: Rectal Normal Mucosa rep260

description: miRBase database (Release 19.0)

value: Subject 754


title: Rectal Carcinoma rep326

description: miRBase database (Release 19.0)

value: Subject 753

value: Carcinoma


title: Rectal Carcinoma rep328

description: miRBase database (Release 19.0)

value: Rectum


title: Rectal Normal Mucosa rep258

description: miRBase database (Release 19.0)

value: Subject 752

value: Rectal


title: Rectal Carcinoma rep327

description: miRBase database (Release 19.0)

value: Unknown


title: Rectal Normal Mucosa rep257

description: miRBase database (Release 19.0)

value: Subject 751


title: Rectal Adenoma rep050

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep259

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep321

description: miRBase database (Release 19.0)

value: Subject 748


title: Rectal Carcinoma rep320

description: miRBase database (Release 19.0)

value: Subject 747


title: Rectal Normal Mucosa rep256

description: miRBase database (Release 19.0)

value: Subject 750


title: Rectal Carcinoma rep319

description: miRBase database (Release 19.0)

value: Subject 746


title: Rectal Normal Mucosa rep254

description: miRBase database (Release 19.0)

value: Normal Mucosa

value: Female


title: Rectal Normal Mucosa rep255

description: miRBase database (Release 19.0)

value: Male


title: Rectal Adenoma rep049

description: miRBase database (Release 19.0)

value: Adenoma


title: Rectal Carcinoma rep322

description: miRBase database (Release 19.0)

value: Subject 749


title: Rectal Carcinoma rep318

description: miRBase database (Release 19.0)

value: Subject 745


title: Rectal Normal Mucosa rep251

description: miRBase database (Release 19.0)

value: Subject 744


title: Rectal Normal Mucosa rep252

description: miRBase database (Release 19.0)


title: Rectal Carcinoma rep325

description: miRBase database (Release 19.0)

value: Carcinoma


title: Rectal Normal Mucosa rep261

description: miRBase database (Release 19.0)

value: Subject 755

value: Rectum


title: Rectal Carcinoma rep324

description: miRBase database (Release 19.0)

value: Rectal


title: Rectal Carcinoma rep323

description: miRBase database (Release 19.0)


title: Rectal Normal Mucosa rep253

description: miRBase database (Release 19.0)


title: Third instar larval ovary with attached fat body rep 3.

type: SRA

city: Bethesda

first: Brian

last: Oliver

state: MD

address: 50 South Drive

department: LBG

institute: NIDDK, NIH

description: Pool of 15 larval ovaries with surrouding attached fatbody.

library_source: transcriptomic

data_processing:
We called bases using RTA v1.13 (Illumina, San Diego, CA), and demultiplexed and converted BCL to FASTQ using bcl2fastq v1.8 (Illumina, San Diego, CA).
We created a custom reference by concatenating the ERCC (SRM2374) as described in (Jiang et al. 2011. PMID: 21816910 and Lee et al. 2016 PMID: 27512518) to the standard Drosophila melanogaster genome assembly release 6 plus ISO1 MT (GCA_000001215.4).
We aligned reads with Hisat2 v2.1.0 (Kim et al. 2015. PMID: 25751142) using default settings except --max-introlen 300000. We also provided a set of know splice sites generated from FlyBase r6.16 to the --known-splicesite-infile option.
Prior to calculating coverage, we removed multi-mapping reads and low quality alignments with Samtools v1.7 (Li et al. 2009. PMID: 19505943) -q 20. We created two GTF files to estimating coverage, which are included in (GSE115478). The first GTF contains gene models from FlyBase r6.16 GTF and ERCC gene models that we generated. The second GTF contains intergenic regions that we created based on FlyBase r6.16.
We generated gene level, ERCC level, and intergenic level counts using featureCounts v1.6.1 (Liao et al., 2014. PMID: 24227677) with default options except: (-s 2) to create strand specific read counts for genic and ERCC, and (-s 0) to create non-stranded counts for intergenic regions.
Genome_build: Drosophila melanogaster Release 6 plus ISO1 MT (GCA_000001215.4).
Supplementary_files_format_and_content: *.pos.bigwig: Is a first strand bigWig file generated using DeepTools v3.0.2 using options ( --minMappingQuality 20, --ignoreDuplicates, --smoothLength 10, --normalizeUsing RPKM, and --filterRNAstrand forward)
Supplementary_files_format_and_content: *.neg.bigwig: Is a second strand bigWig file generated using DeepTools v3.0.2 using options ( --minMappingQuality 20, --ignoreDuplicates, --smoothLength 10, --normalizeUsing RPKM, and --filterRNAstrand reverse)
Supplementary_files_format_and_content: *.featurecounts.s2.txt: Contains gene level + ERCC level raw counts generated using featureCounts v1.6.1 with options (-s 2)
Supplementary_files_format_and_content: *.featurecounts.intergenic.s0.txt: Contains intergenic level raw counts generated using featureCounts v1.6.1 with options (-s 0)

molecule: polyA RNA

organism: Drosophila melanogaster

source_name: tissue

growth_protocol:
Flies were grown on fly food A (LabExpress Ann Arbor, MI) at 25°C under constant light and 60% relative humidity.
We grew w1118 flies (FBst0005905; Bloomington stock center, Bloomington, IN) on Fly food A (LabExpress Ann Arbor, MI) in constant light at 25°C and 60% relative humidity. We collected eggs every 8-16 hr from six mated females, and allowed larvae to develop until the late third instar larval stage. For larval staging, we fed second and third instar larvae with water/yeast paste containing 0.5 mg/ml Sulforhodamine B sodium salt (Sigma-Aldrich, Cat. No. S1402-25G. St. Louis, MO).

extract_protocol:
We selected late third instar larvae that were immobilized, but that had not extended their anterior spiracles. We dissected larvae in PBS at 22°C (Gibco Life Technologies, Carlsbad, CA), and collected ovaries from individuals with Sulforhodamine B dye located only in the mid and hindgut. Ovaries were collected in 350 μl RLT buffer (Qiagen, Cat. No. 79216. Valencia, CA), vortexed two times for 30 sec with a 30 sec interval in between, quick frozen in a dry ice ethanol bath, and stored at -80°C until RNA extraction. We had four different treatment conditions: We collected 15 ovaries with fatbody still attached around the gonads. We collected 30 ovaries without fatbody by enzymatically removing the fatbody by treating with 0.075 mg/ml Papain (Sigma-Aldrich, St. Louis, MO) and 0.075 mg/ml Collagenase enzymes (Sigma-Aldrich, St. Louis, MO) in PBS in 1.5 ml eppendorf tube for 3 min with gentle vortexing by flicking the tube with a forefinger. We collected fatbody only from 10 ovaries by dissecting the fatbody and disposing of the ovaries. We dissociated 30 ovaries after removing the fatbody by treating with 2 mg/ml Papain and 2 mg/ml Collagenase enzymes. We pelleted cells from all treatments using a table top centrifuge at 0.9 g for 5 min and resuspended in 350 μl RLT buffer.       Using the RNeasy 96 kit, we extracted total RNA (Qiagen, Cat. No. 1019545. Valencia, CA) by following the manufacturer’s protocol. We used Quant-iT RiboGreen quantification kit (Life Technologies, Cat. No. R11490. Carlsbad, CA) to quantify the RNA. RNA was stored in -80°C until the library preparation.
We used 200 ng of total RNA and performed RNA-seq library preparation according to Lee et al (doi:10.1101/032920 and Gene Expression Omnibus GSE73920). Briefly, PolyA+ selection was done using Dynabeads Oligo(dT)25 (Life technologies, Grand Island, NY). Selected mRNA was fragmented, and RT was performed with the second strand synthesis by incorporating dUTPs. We used External RNA control consortium spike-ins pools 78A and 78B (SRM2374, Zook et al., 2012. PMID: 22859977) transcribed from standard reference. We used barcoded adaptors for indexing the libraries (Qiagen, 98 TruSeq v2 kit barcoded adaptors, Valencia, CA), and sequenced stranded 42 multiplexed libraries using a single-ended 50 bp strategy on one lane using a HiSeq Illumina 2500 (Illumina, San Diego, CA).

value: female

tag: developmental stage

value: Late third instar larval stage:immobilized, partial gut clearance as dyed yeast paste exist partly in midgut and hindgut, prior to anterior spiracle eversion.

value: 25 degreeC

tag: spike-in

value: ERCC (SRM2374) 78A

value: A


title: Third instar larval fat body from around ovary rep 4.

description: Fatbody dissected from 10 larval ovaries.

value: fat cell (FBbt:00046052)

value: ERCC (SRM2374) 78B

value: B


title: Third instar larval ovary cleaned of fat body with papain rep 3.

description: Pool of 30 ovaries with fatbody removed by enzymatically treating with Papain and Collagenase enzymes.


title: Third instar larval ovary dissociated with papain rep 2.

description: Pool of 30 ovaries with fatbody removed and then dissociated by enzymatically treating with Papain and Collagenase.

value: F


title: Third instar larval ovary with attached fat body rep 2.


title: Third instar larval ovary dissociated with papain rep 1.


title: Third instar larval ovary with attached fat body rep 1.


title: Third instar larval ovary dissociated with papain rep 4.


title: Third instar larval ovary cleaned of fat body with papain rep 1.


title: Third instar larval ovary cleaned of fat body with papain rep 4.


title: Rectal Carcinoma rep317

description: miRBase database (Release 19.0)

value: Male


title: Third instar larval ovary dissociated with papain rep 3.


title: Third instar larval fat body from around ovary rep 2.


title: Third instar larval fat body from around ovary rep 3.


title: Third instar larval fat body from around ovary rep 1.


title: Colon Carcinoma rep367

description: miRBase database (Release 19.0)

value: Subject 376

value: Colon

value: Female

value: Distal


title: Colon Normal Mucosa rep340

description: miRBase database (Release 19.0)

value: Subject 377

value: Normal Mucosa

value: Proximal


title: Colon Carcinoma rep364

description: miRBase database (Release 19.0)

value: Subject 373

value: Carcinoma


title: Colon Normal Mucosa rep339

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep366

description: miRBase database (Release 19.0)

value: Subject 375


title: Colon Normal Mucosa rep337

description: miRBase database (Release 19.0)

value: Subject 374


title: Colon Carcinoma rep365

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep338

description: miRBase database (Release 19.0)


title: Third instar larval ovary with attached fat body rep 4.

value: female

value: Late third instar larval stage:immobilized, partial gut clearance as dyed yeast paste exist partly in midgut and hindgut, prior to anterior spiracle eversion.

value: 25 degreeC

value: A


title: Colon Normal Mucosa rep335

description: miRBase database (Release 19.0)

value: Subject 372


title: Colon Carcinoma rep363

description: miRBase database (Release 19.0)

value: Male


title: Colon Carcinoma rep362

description: miRBase database (Release 19.0)

value: Subject 371


title: Colon Normal Mucosa rep336

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep334

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep333

description: miRBase database (Release 19.0)

value: Subject 370


title: Colon Normal Mucosa rep331

description: miRBase database (Release 19.0)

value: Subject 368


title: Colon Carcinoma rep361

description: miRBase database (Release 19.0)

value: Distal


title: Colon Carcinoma rep358

description: miRBase database (Release 19.0)

value: Subject 367

value: Female


title: Colon Carcinoma rep357

description: miRBase database (Release 19.0)

value: Subject 366


title: Colon Carcinoma rep356

description: miRBase database (Release 19.0)

value: Subject 365

value: Carcinoma

value: Proximal


title: Colon Normal Mucosa rep329

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Carcinoma rep355

description: miRBase database (Release 19.0)

value: Subject 364


title: Colon Carcinoma rep359

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep330

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep354

description: miRBase database (Release 19.0)

value: Subject 363


title: Colon Normal Mucosa rep328

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep327

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep353

description: miRBase database (Release 19.0)

value: Subject 362


title: Colon Normal Mucosa rep326

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep352

description: miRBase database (Release 19.0)

value: Subject 361


title: Colon Normal Mucosa rep325

description: miRBase database (Release 19.0)

value: Male


title: Colon Adenoma rep044

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Carcinoma rep351

description: miRBase database (Release 19.0)

value: Subject 360

value: Colon


title: Colon Normal Mucosa rep323

description: miRBase database (Release 19.0)

value: Subject 359


title: Colon Normal Mucosa rep324

description: miRBase database (Release 19.0)

value: Distal


title: Colon Carcinoma rep360

description: miRBase database (Release 19.0)

value: Subject 369


title: Colon Carcinoma rep349

description: miRBase database (Release 19.0)

value: Subject 358


title: Colon Carcinoma rep350

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep332

description: miRBase database (Release 19.0)

value: Female


title: Colon Normal Mucosa rep322

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep321

description: miRBase database (Release 19.0)

value: Subject 357


title: Colon Normal Mucosa rep320

description: miRBase database (Release 19.0)

value: Subject 356


title: Colon Carcinoma rep348

description: miRBase database (Release 19.0)

value: Carcinoma

value: Proximal


title: Colon Carcinoma rep347

description: miRBase database (Release 19.0)


title: Colon Adenoma rep043

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep319

description: miRBase database (Release 19.0)

value: Subject 355

value: Normal Mucosa


title: Colon Carcinoma rep346

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep345

description: miRBase database (Release 19.0)

value: Subject 354


title: Colon Normal Mucosa rep318

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep316

description: miRBase database (Release 19.0)

value: Subject 352


title: Colon Normal Mucosa rep315

description: miRBase database (Release 19.0)

value: Subject 351


title: Colon Carcinoma rep341

description: miRBase database (Release 19.0)

value: Subject 350


title: Colon Adenoma rep042

description: miRBase database (Release 19.0)

value: Adenoma

value: Male


title: Colon Carcinoma rep343

description: miRBase database (Release 19.0)

value: Colon


title: Colon Carcinoma rep344

description: miRBase database (Release 19.0)

value: Subject 353

value: Distal


title: Colon Carcinoma rep340

description: miRBase database (Release 19.0)

value: Subject 349


title: Colon Carcinoma rep342

description: miRBase database (Release 19.0)

value: Female


title: Colon Normal Mucosa rep314

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep339

description: miRBase database (Release 19.0)

value: Subject 348


title: Colon Normal Mucosa rep313

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep317

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep337

description: miRBase database (Release 19.0)

value: Subject 346


title: Colon Carcinoma rep336

description: miRBase database (Release 19.0)

value: Subject 345

value: Carcinoma


title: Colon Normal Mucosa rep309

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Normal Mucosa rep311

description: miRBase database (Release 19.0)

value: Subject 347

value: Normal Mucosa


title: Colon Hyperplastic Polyp rep001

description: miRBase database (Release 19.0)

source_name: Paraffin embedded colon hyperplastic polyp

value: Hyperplastic Polyp


title: Colon Adenoma rep039

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep338

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep312

description: miRBase database (Release 19.0)


title: Colon Adenoma rep040

description: miRBase database (Release 19.0)


title: Colon Adenoma rep041

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep335

description: miRBase database (Release 19.0)

value: Subject 343


title: Third instar larval ovary cleaned of fat body with papain rep 2.

value: female

value: Late third instar larval stage:immobilized, partial gut clearance as dyed yeast paste exist partly in midgut and hindgut, prior to anterior spiracle eversion.

value: 25 degreeC

value: ERCC (SRM2374) 78B

value: B


title: Colon Carcinoma rep332

description: miRBase database (Release 19.0)

value: Subject 340

value: Colon

value: Distal


title: Colon Normal Mucosa rep310

description: miRBase database (Release 19.0)

value: Female


title: Colon Carcinoma rep331

description: miRBase database (Release 19.0)

value: Subject 339


title: Colon Normal Mucosa rep306

description: miRBase database (Release 19.0)

value: Subject 342

value: Male


title: Colon Carcinoma rep329

description: miRBase database (Release 19.0)

value: Subject 337

value: Carcinoma


title: Colon Carcinoma rep334

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep333

description: miRBase database (Release 19.0)

value: Subject 341


title: Colon Normal Mucosa rep302

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep304

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep330

description: miRBase database (Release 19.0)

value: Subject 338

value: Proximal


title: Colon Normal Mucosa rep303

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep307

description: miRBase database (Release 19.0)

value: Subject 343


title: Colon Normal Mucosa rep308

description: miRBase database (Release 19.0)

value: Subject 344


title: Colon Normal Mucosa rep300

description: miRBase database (Release 19.0)

value: Subject 335


title: Colon Carcinoma rep326

description: miRBase database (Release 19.0)

value: Subject 334


title: Colon Normal Mucosa rep299

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep298

description: miRBase database (Release 19.0)

value: Subject 333


title: Colon Normal Mucosa rep305

description: miRBase database (Release 19.0)

value: Colon


title: Colon Carcinoma rep328

description: miRBase database (Release 19.0)

value: Subject 336

value: Distal


title: Colon Normal Mucosa rep296

description: miRBase database (Release 19.0)

value: Subject 331


title: Colon Carcinoma rep323

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep301

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep297

description: miRBase database (Release 19.0)

value: Subject 332

value: Female


title: Colon Carcinoma rep324

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep322

description: miRBase database (Release 19.0)

value: Subject 330

value: Male


title: Colon Normal Mucosa rep295

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep321

description: miRBase database (Release 19.0)

value: Subject 329

value: Carcinoma


title: Colon Carcinoma rep327

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep294

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Carcinoma rep320

description: miRBase database (Release 19.0)

value: Subject 328


title: Colon Normal Mucosa rep293

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep319

description: miRBase database (Release 19.0)

value: Subject 327


title: Colon Carcinoma rep318

description: miRBase database (Release 19.0)

value: Subject 326


title: Colon Normal Mucosa rep292

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep291

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep316

description: miRBase database (Release 19.0)

value: Subject 324

value: Proximal


title: Colon Normal Mucosa rep289

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep317

description: miRBase database (Release 19.0)

value: Subject 325


title: Colon Carcinoma rep315

description: miRBase database (Release 19.0)

value: Subject 323

value: Colon


title: Colon Adenoma rep038

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Carcinoma rep314

description: miRBase database (Release 19.0)

value: Subject 322

value: Distal


title: Colon Normal Mucosa rep287

description: miRBase database (Release 19.0)

value: Female


title: Colon Normal Mucosa rep288

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep325

description: miRBase database (Release 19.0)

value: Subject 333


title: Colon Adenoma rep037

description: miRBase database (Release 19.0)

value: Subject 321

value: Male


title: Colon Carcinoma rep313

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Normal Mucosa rep286

description: miRBase database (Release 19.0)

value: Subject 320

value: Normal Mucosa


title: Colon Carcinoma rep312

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep285

description: miRBase database (Release 19.0)

value: Subject 319


title: Colon Carcinoma rep309

description: miRBase database (Release 19.0)

value: Subject 317


title: Colon Normal Mucosa rep283

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep311

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep310

description: miRBase database (Release 19.0)

value: Subject 318


title: Colon Adenoma rep036

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep281

description: miRBase database (Release 19.0)

value: Subject 315

value: Proximal


title: Colon Normal Mucosa rep284

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep308

description: miRBase database (Release 19.0)

value: Subject 316


title: Colon Normal Mucosa rep282

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep290

description: miRBase database (Release 19.0)

value: Subject 325


title: Colon Carcinoma rep304

description: miRBase database (Release 19.0)

value: Subject 312


title: Colon Carcinoma rep305

description: miRBase database (Release 19.0)

value: Subject 313


title: Colon Carcinoma rep306

description: miRBase database (Release 19.0)

value: Subject 314

value: Female

value: Distal


title: Colon Carcinoma rep301

description: miRBase database (Release 19.0)

value: Subject 309


title: Colon Carcinoma rep300

description: miRBase database (Release 19.0)

value: Subject 308

value: Carcinoma

value: Male


title: Colon Normal Mucosa rep277

description: miRBase database (Release 19.0)

value: Subject 310

value: Normal Mucosa


title: Colon Normal Mucosa rep279

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep303

description: miRBase database (Release 19.0)

value: Subject 311


title: Colon Normal Mucosa rep280

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep278

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep275

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep307

description: miRBase database (Release 19.0)

value: Subject 315


title: Colon Carcinoma rep298

description: miRBase database (Release 19.0)

value: Subject 306

value: Proximal


title: Colon Normal Mucosa rep274

description: miRBase database (Release 19.0)

value: Subject 307

value: Colon


title: Colon Carcinoma rep299

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep302

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep273

description: miRBase database (Release 19.0)


title: Colon Adenoma rep034

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Normal Mucosa rep272

description: miRBase database (Release 19.0)

value: Subject 305


title: Colon Normal Mucosa rep271

description: miRBase database (Release 19.0)

value: Subject 304


title: Colon Carcinoma rep296

description: miRBase database (Release 19.0)

value: Female


title: Colon Normal Mucosa rep276

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep269

description: miRBase database (Release 19.0)

value: Subject 302

value: Distal


title: Colon Carcinoma rep295

description: miRBase database (Release 19.0)

value: Subject 303


title: Colon Normal Mucosa rep270

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep294

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Carcinoma rep297

description: miRBase database (Release 19.0)

value: Male


title: Colon Adenoma rep035

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep268

description: miRBase database (Release 19.0)

value: Subject 301


title: Colon Carcinoma rep293

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep267

description: miRBase database (Release 19.0)

value: Subject 300

value: Normal Mucosa


title: Colon Carcinoma rep290

description: miRBase database (Release 19.0)

value: Subject 298


title: Colon Normal Mucosa rep265

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep264

description: miRBase database (Release 19.0)

value: Subject 297


title: Colon Adenoma rep033

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep289

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep291

description: miRBase database (Release 19.0)

value: Subject 299


title: Colon Carcinoma rep287

description: miRBase database (Release 19.0)

value: Subject 295

value: Proximal


title: Colon Carcinoma rep288

description: miRBase database (Release 19.0)

value: Subject 296

value: Colon


title: Colon Carcinoma rep286

description: miRBase database (Release 19.0)

value: Subject 294


title: Colon Normal Mucosa rep262

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep292

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep260

description: miRBase database (Release 19.0)

value: Subject 293

value: Female


title: Colon Normal Mucosa rep263

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep285

description: miRBase database (Release 19.0)

value: Distal


title: Colon Normal Mucosa rep261

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep284

description: miRBase database (Release 19.0)

value: Subject 292


title: Colon Adenoma rep032

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Normal Mucosa rep259

description: miRBase database (Release 19.0)

value: Male


title: Colon Carcinoma rep283

description: miRBase database (Release 19.0)

value: Subject 291

value: Carcinoma


title: Colon Normal Mucosa rep258

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep256

description: miRBase database (Release 19.0)

value: Subject 289


title: Colon Carcinoma rep282

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep257

description: miRBase database (Release 19.0)

value: Subject 290


title: Colon Normal Mucosa rep266

description: miRBase database (Release 19.0)

value: Subject 299


title: Colon Carcinoma rep281

description: miRBase database (Release 19.0)

value: Subject 288


title: Colon Normal Mucosa rep255

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep254

description: miRBase database (Release 19.0)

value: Subject 287


title: Colon Carcinoma rep280

description: miRBase database (Release 19.0)


title: Colon Adenoma rep031

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep252

description: miRBase database (Release 19.0)

value: Subject 285

value: Proximal


title: Colon Carcinoma rep278

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep253

description: miRBase database (Release 19.0)

value: Subject 286


title: Colon Carcinoma rep279

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep277

description: miRBase database (Release 19.0)

value: Subject 284

value: Female


title: Colon Normal Mucosa rep249

description: miRBase database (Release 19.0)

value: Subject 282


title: Colon Normal Mucosa rep250

description: miRBase database (Release 19.0)

value: Subject 283


title: Colon Carcinoma rep274

description: miRBase database (Release 19.0)

value: Subject 281


title: Colon Normal Mucosa rep248

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep251

description: miRBase database (Release 19.0)

value: Distal


title: Colon Carcinoma rep273

description: miRBase database (Release 19.0)

value: Subject 280

value: Carcinoma


title: Colon Carcinoma rep275

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep276

description: miRBase database (Release 19.0)


title: Colon Adenoma rep030

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Normal Mucosa rep247

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Serrated Sessile Polyp rep003

description: miRBase database (Release 19.0)

source_name: Paraffin embedded colon serrated sessile polyp

value: Subject 278

value: Serrated Sessile Polyp

value: Male


title: Colon Carcinoma rep272

description: miRBase database (Release 19.0)

value: Subject 279


title: Colon Normal Mucosa rep246

description: miRBase database (Release 19.0)

value: Subject 277

value: Proximal


title: Colon Normal Mucosa rep245

description: miRBase database (Release 19.0)

value: Subject 275

value: Colon


title: Colon Carcinoma rep270

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep269

description: miRBase database (Release 19.0)

value: Subject 276

value: Female


title: Colon Carcinoma rep268

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep267

description: miRBase database (Release 19.0)

value: Subject 274


title: Colon Carcinoma rep266

description: miRBase database (Release 19.0)

value: Subject 273


title: Colon Carcinoma rep271

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep265

description: miRBase database (Release 19.0)

value: Subject 272

value: Distal


title: Colon Normal Mucosa rep243

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep244

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep241

description: miRBase database (Release 19.0)

value: Subject 271


title: Colon Normal Mucosa rep242

description: miRBase database (Release 19.0)


title: Colon High-Grade Displasia rep001

description: miRBase database (Release 19.0)

source_name: Paraffin embedded colon high-grade displasia

value: High-Grade Displasia


title: Colon Carcinoma rep264

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Carcinoma rep263

description: miRBase database (Release 19.0)

value: Subject 270


title: Colon Carcinoma rep261

description: miRBase database (Release 19.0)

value: Subject 268


title: Colon Normal Mucosa rep240

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep239

description: miRBase database (Release 19.0)

value: Subject 267


title: Colon Normal Mucosa rep238

description: miRBase database (Release 19.0)

value: Subject 266


title: Colon Carcinoma rep257

description: miRBase database (Release 19.0)

value: Subject 264


title: Colon Carcinoma rep259

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Normal Mucosa rep237

description: miRBase database (Release 19.0)

value: Subject 265

value: Colon

value: Male


title: Colon Normal Mucosa rep234

description: miRBase database (Release 19.0)

value: Subject 262

value: Female


title: Colon Carcinoma rep254

description: miRBase database (Release 19.0)

value: Subject 261


title: Colon Normal Mucosa rep236

description: miRBase database (Release 19.0)

value: Distal


title: Colon Carcinoma rep258

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep262

description: miRBase database (Release 19.0)

value: Subject 269


title: Colon Carcinoma rep252

description: miRBase database (Release 19.0)

value: Subject 259


title: Colon Normal Mucosa rep235

description: miRBase database (Release 19.0)

value: Subject 263


title: Colon Normal Mucosa rep233

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep251

description: miRBase database (Release 19.0)

value: Subject 258

value: Carcinoma


title: Colon Normal Mucosa rep232

description: miRBase database (Release 19.0)

value: Subject 260

value: Normal Mucosa


title: Colon Carcinoma rep256

description: miRBase database (Release 19.0)