title: Colon Normal Mucosa rep231

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep253

status: Public on Jun 09 2018

type: RNA

city: Salt Lake City

first: Jennifer

last: Herrick

state: UT

address: 295 Chipeta Way

department: Internal Medicine

country: USA

institute: University of Utah

description: miRBase database (Release 19.0)

hyb_protocol: Labeled RNA was resuspended in 18ul nuclease free water, 4.5ul 10X GE Blocking agent (Agilent) and 22.5ul of 2X Hi-RPM Hybridization buffer were added (Agilent).  The 45ul hybridization solution was placed onto Agilent Human miRNA Microarray V19.0 Arrays (Cat# G4872A-046064). The microarray contains probes for 2006 unique human miRNAs. The miRNA array contains on average 30 replicates per probe sequence for a total of 60 000 unique features. Each glass slide contains 8x60K formatted arrays.  Agilent Sure Hybridization Chambers were utilized.  Hybridization was carried out at 55C for 20 hours in a rotating Agilent hybridization oven.  After hybridization, microarrays were washed for 5 minutes at room temperature in GE Wash Buffer 1 (Agilent) followed by a 5 minute was in GE Wash Buffer 2 at 37C.  Slides were placed in a slide holder  for scanning.

scan_protocol: Slides were scanned on an Agilent SureScan microarray scanner model G2600D with auto detect forr 8x60K array slides.

data_processing:
Data were extracted from the scanned image using Agilent Feature Extract software v.11.5.1.1. Data were required to pass stringent QC parameters established by Agilent that included tests for excessive background fluorescence, excessive variation among probe sequence replicates on the array, and measures of the total gene signal on the array to assess low signal.
Genes with fewer than 0.5 mean reads across all samples were dropped. To minimize differences that could be attributed to the array, amount of RNA, location on array, or other factors that could erroneously influence expression, total gene signal was normalized by multiplying each sample by a scaling factor which was the median of the 75th percentiles of all the samples divided by the 75th percentile of each individual sample.

molecule: total RNA

organism: Homo sapiens

source_name: Paraffin embedded colon carcinoma

label_protocol: 100 ng total RNA was labeled with Cy3 according to the manufacturer using the miRNA Complete Labeling and Hybe Kit from Agilent (p/n 5190-0456).  Labeled RNA was purified with the use of Micro Bio-Spin 6 columns (Bio-Rad) and dried.

extract_protocol: RNA (miRNA) was extracted from formalin-fixed paraffin embedded tissues.  Cells were dissected from 1–4 sequential sections on aniline blue stained slides using an H&E slide for reference. Total RNA containing miRNA was extracted, isolated, and purified using the RecoverAll Total Nucleic Acid isolation kit (Ambion), RNA yields were determined using a NanoDrop spectrophotometer.

tag: individual

value: Subject 260

tag: organ

value: Colon

tag: tissue

value: Carcinoma

tag: Sex

value: Male

tag: site

value: Distal

tag: ajcc stage


title: Colon Carcinoma rep250

description: miRBase database (Release 19.0)

value: Subject 257


title: Colon Normal Mucosa rep230

description: miRBase database (Release 19.0)

source_name: Paraffin embedded normal colon mucosa

value: Subject 258

value: Normal Mucosa

value: Female


title: Colon Carcinoma rep260

description: miRBase database (Release 19.0)

value: Subject 267


title: Colon Normal Mucosa rep229

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep248

description: miRBase database (Release 19.0)

value: Subject 255

value: Proximal


title: Colon Normal Mucosa rep228

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep247

description: miRBase database (Release 19.0)

value: Subject 254


title: Colon Carcinoma rep245

description: miRBase database (Release 19.0)

value: Subject 252


title: Colon Carcinoma rep255

description: miRBase database (Release 19.0)

value: Subject 262


title: Colon Carcinoma rep246

description: miRBase database (Release 19.0)

value: Subject 253


title: Colon Normal Mucosa rep226

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep225

description: miRBase database (Release 19.0)

value: Subject 251


title: Colon Normal Mucosa rep224

description: miRBase database (Release 19.0)

value: Subject 250


title: Colon Carcinoma rep242

description: miRBase database (Release 19.0)

value: Subject 249

value: Colon


title: Colon Normal Mucosa rep223

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep244

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Carcinoma rep241

description: miRBase database (Release 19.0)

value: Subject 248

value: Male

value: Distal


title: Colon Carcinoma rep249

description: miRBase database (Release 19.0)

value: Subject 256


title: Colon Normal Mucosa rep222

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep227

description: miRBase database (Release 19.0)

value: Female


title: Colon Carcinoma rep236

description: miRBase database (Release 19.0)

value: Subject 243


title: Colon Normal Mucosa rep221

description: miRBase database (Release 19.0)

value: Subject 247

value: Proximal


title: Colon Carcinoma rep240

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep235

description: miRBase database (Release 19.0)

value: Subject 242


title: Colon Normal Mucosa rep217

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep218

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep220

description: miRBase database (Release 19.0)

value: Subject 245


title: Colon Carcinoma rep239

description: miRBase database (Release 19.0)

value: Subject 246


title: Colon Carcinoma rep237

description: miRBase database (Release 19.0)

value: Subject 244


title: Colon Normal Mucosa rep215

description: miRBase database (Release 19.0)

value: Subject 240


title: Colon Carcinoma rep238

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep216

description: miRBase database (Release 19.0)

value: Subject 241


title: Colon Carcinoma rep234

description: miRBase database (Release 19.0)

value: Colon


title: Colon Carcinoma rep233

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Normal Mucosa rep213

description: miRBase database (Release 19.0)

value: Subject 238


title: Colon Normal Mucosa rep214

description: miRBase database (Release 19.0)

value: Subject 239


title: Colon Carcinoma rep231

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep243

description: miRBase database (Release 19.0)

value: Subject 250


title: Colon Carcinoma rep230

description: miRBase database (Release 19.0)

value: Subject 237

value: Male


title: Colon Normal Mucosa rep219

description: miRBase database (Release 19.0)

value: Normal Mucosa

value: Female

value: Distal


title: Colon Carcinoma rep229

description: miRBase database (Release 19.0)

value: Subject 236


title: Colon Carcinoma rep227

description: miRBase database (Release 19.0)

value: Subject 234

value: Proximal


title: Colon Normal Mucosa rep210

description: miRBase database (Release 19.0)

value: Subject 235


title: Colon Normal Mucosa rep212

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep209

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep232

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep226

description: miRBase database (Release 19.0)

value: Subject 233


title: Colon Normal Mucosa rep208

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep206

description: miRBase database (Release 19.0)

value: Subject 231


title: Colon Normal Mucosa rep205

description: miRBase database (Release 19.0)

value: Subject 230


title: Colon Carcinoma rep224

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep207

description: miRBase database (Release 19.0)

value: Subject 232


title: Colon Normal Mucosa rep203

description: miRBase database (Release 19.0)

value: Subject 228


title: Colon Normal Mucosa rep204

description: miRBase database (Release 19.0)

value: Subject 229


title: Colon Carcinoma rep223

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Carcinoma rep221

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep222

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep220

description: miRBase database (Release 19.0)

value: Subject 227


title: Colon Carcinoma rep219

description: miRBase database (Release 19.0)

value: Subject 226


title: Colon Normal Mucosa rep202

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep201

description: miRBase database (Release 19.0)

value: Female


title: Colon Carcinoma rep228

description: miRBase database (Release 19.0)

value: Male


title: Colon Normal Mucosa rep211

description: miRBase database (Release 19.0)

value: Subject 236

value: Distal


title: Colon Carcinoma rep218

description: miRBase database (Release 19.0)

value: Subject 225

value: Proximal


title: Colon Normal Mucosa rep200

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep217

description: miRBase database (Release 19.0)

value: Subject 224


title: Colon Normal Mucosa rep199

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep198

description: miRBase database (Release 19.0)

value: Subject 223


title: Colon Adenoma rep029

description: miRBase database (Release 19.0)

source_name: Paraffin embedded colon adenoma

value: Subject 233

value: Adenoma


title: Colon Carcinoma rep216

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep196

description: miRBase database (Release 19.0)

value: Subject 221


title: Colon Carcinoma rep214

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep212

description: miRBase database (Release 19.0)

value: Subject 219


title: Colon Carcinoma rep213

description: miRBase database (Release 19.0)

value: Subject 220

value: Carcinoma

value: Unknown


title: Colon Carcinoma rep225

description: miRBase database (Release 19.0)

value: Subject 232


title: Colon Adenoma rep028

description: miRBase database (Release 19.0)

value: Subject 228

value: Female


title: Colon Normal Mucosa rep197

description: miRBase database (Release 19.0)

value: Subject 222

value: Normal Mucosa


title: Colon Carcinoma rep210

description: miRBase database (Release 19.0)

value: Subject 217

value: Male

value: Distal


title: Colon Carcinoma rep211

description: miRBase database (Release 19.0)

value: Subject 218

value: Proximal


title: Colon Normal Mucosa rep194

description: miRBase database (Release 19.0)


title: Colon Adenoma rep027

description: miRBase database (Release 19.0)

value: Subject 216

value: Adenoma


title: Colon Carcinoma rep209

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep191

description: miRBase database (Release 19.0)

value: Subject 214


title: Colon Normal Mucosa rep193

description: miRBase database (Release 19.0)


title: Colon Serrated Sessile Polyp rep002

description: miRBase database (Release 19.0)

source_name: Paraffin embedded colon serrated sessile polyp

value: Serrated Sessile Polyp


title: Colon Normal Mucosa rep192

description: miRBase database (Release 19.0)

value: Subject 215


title: Colon Carcinoma rep207

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Carcinoma rep208

description: miRBase database (Release 19.0)


title: Colon Adenoma rep026

description: miRBase database (Release 19.0)

value: Subject 213


title: Colon Normal Mucosa rep190

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep215

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep189

description: miRBase database (Release 19.0)

value: Subject 212


title: Colon Carcinoma rep204

description: miRBase database (Release 19.0)

value: Subject 211


title: Colon Normal Mucosa rep195

description: miRBase database (Release 19.0)

value: Female


title: Colon Adenoma rep025

description: miRBase database (Release 19.0)

value: Subject 210


title: Colon Normal Mucosa rep188

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep187

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep203

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep202

description: miRBase database (Release 19.0)

value: Subject 209

value: Male


title: Colon Normal Mucosa rep186

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep199

description: miRBase database (Release 19.0)

value: Subject 206


title: Colon Carcinoma rep206

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Normal Mucosa rep184

description: miRBase database (Release 19.0)

value: Subject 207

value: Distal


title: Colon Carcinoma rep201

description: miRBase database (Release 19.0)

value: Subject 208

value: Colon


title: Colon Carcinoma rep200

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep185

description: miRBase database (Release 19.0)


title: Colon Adenoma rep024

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Normal Mucosa rep182

description: miRBase database (Release 19.0)

value: Subject 205


title: Colon Carcinoma rep198

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Normal Mucosa rep181

description: miRBase database (Release 19.0)

value: Subject 204


title: Colon Carcinoma rep196

description: miRBase database (Release 19.0)

value: Subject 203


title: Colon Normal Mucosa rep180

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep197

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep179

description: miRBase database (Release 19.0)

value: Subject 202


title: Colon Adenoma rep023

description: miRBase database (Release 19.0)

value: Female


title: Colon Carcinoma rep195

description: miRBase database (Release 19.0)


title: Colon Adenoma rep022

description: miRBase database (Release 19.0)

value: Subject 201


title: Colon Normal Mucosa rep178

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Carcinoma rep194

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep193

description: miRBase database (Release 19.0)

value: Subject 200


title: Colon Carcinoma rep192

description: miRBase database (Release 19.0)

value: Subject 199

value: Male


title: Colon Normal Mucosa rep177

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Normal Mucosa rep183

description: miRBase database (Release 19.0)

value: Subject 206


title: Colon Carcinoma rep189

description: miRBase database (Release 19.0)

value: Subject 196


title: Colon Normal Mucosa rep176

description: miRBase database (Release 19.0)

value: Subject 198


title: Colon Carcinoma rep188

description: miRBase database (Release 19.0)

value: Subject 195

value: Colon


title: Colon Normal Mucosa rep175

description: miRBase database (Release 19.0)

value: Subject 197

value: Distal


title: Colon Normal Mucosa rep174

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep190

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Carcinoma rep191

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep172

description: miRBase database (Release 19.0)

value: Subject 194


title: Colon Carcinoma rep187

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep173

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep186

description: miRBase database (Release 19.0)

value: Subject 193


title: Colon Carcinoma rep185

description: miRBase database (Release 19.0)

value: Subject 192


title: Colon Normal Mucosa rep171

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep184

description: miRBase database (Release 19.0)

value: Subject 191

value: Female


title: Colon Carcinoma rep180

description: miRBase database (Release 19.0)

value: Subject 186


title: Colon Normal Mucosa rep166

description: miRBase database (Release 19.0)

value: Subject 187

value: Normal Mucosa


title: Colon Normal Mucosa rep169

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Normal Mucosa rep165

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep181

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep168

description: miRBase database (Release 19.0)

value: Subject 189

value: Male


title: Colon Carcinoma rep183

description: miRBase database (Release 19.0)

value: Subject 190


title: Colon Carcinoma rep179

description: miRBase database (Release 19.0)

value: Subject 185


title: Colon Normal Mucosa rep170

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep164

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep163

description: miRBase database (Release 19.0)

value: Subject 184


title: Colon Carcinoma rep178

description: miRBase database (Release 19.0)

value: Subject 183

value: Distal


title: Colon Normal Mucosa rep162

description: miRBase database (Release 19.0)


title: Colon Adenoma rep021

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Carcinoma rep177

description: miRBase database (Release 19.0)

value: Subject 182

value: Carcinoma


title: Colon Carcinoma rep175

description: miRBase database (Release 19.0)

value: Subject 180


title: Colon Carcinoma rep182

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep160

description: miRBase database (Release 19.0)

value: Subject 181


title: Colon Carcinoma rep173

description: miRBase database (Release 19.0)

value: Subject 178

value: Female


title: Colon Carcinoma rep176

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep158

description: miRBase database (Release 19.0)

value: Subject 179

value: Normal Mucosa


title: Colon Normal Mucosa rep159

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Carcinoma rep174

description: miRBase database (Release 19.0)

value: Male


title: Colon Normal Mucosa rep167

description: miRBase database (Release 19.0)

value: Subject 188


title: Colon Carcinoma rep172

description: miRBase database (Release 19.0)

value: Subject 177


title: Colon Carcinoma rep171

description: miRBase database (Release 19.0)

value: Subject 176

value: Colon


title: Colon Normal Mucosa rep157

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep155

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep153

description: miRBase database (Release 19.0)

value: Subject 172


title: Colon Normal Mucosa rep154

description: miRBase database (Release 19.0)

value: Subject 174

value: Distal


title: Colon Carcinoma rep168

description: miRBase database (Release 19.0)

value: Subject 173


title: Colon Carcinoma rep170

description: miRBase database (Release 19.0)

value: Subject 175

value: Carcinoma


title: Colon Carcinoma rep169

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep166

description: miRBase database (Release 19.0)

value: Subject 171


title: Colon Normal Mucosa rep151

description: miRBase database (Release 19.0)

value: Subject 170


title: Colon Normal Mucosa rep150

description: miRBase database (Release 19.0)

value: Subject 169

value: Female


title: Colon Carcinoma rep165

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep164

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep161

description: miRBase database (Release 19.0)

value: Subject 182

value: Normal Mucosa


title: Colon Adenoma rep020

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Carcinoma rep163

description: miRBase database (Release 19.0)

value: Subject 168

value: Proximal


title: Colon Normal Mucosa rep156

description: miRBase database (Release 19.0)

value: Subject 177


title: Colon Normal Mucosa rep149

description: miRBase database (Release 19.0)

value: Colon


title: Colon Carcinoma rep162

description: miRBase database (Release 19.0)

value: Subject 167

value: Male


title: Colon Carcinoma rep167

description: miRBase database (Release 19.0)

value: Subject 172

value: Distal


title: Colon Normal Mucosa rep148

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep152

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep160

description: miRBase database (Release 19.0)

value: Subject 165


title: Colon Carcinoma rep161

description: miRBase database (Release 19.0)

value: Subject 166

value: Carcinoma


title: Colon Carcinoma rep159

description: miRBase database (Release 19.0)

value: Subject 164


title: Colon Normal Mucosa rep145

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep153

description: miRBase database (Release 19.0)

value: Subject 158


title: Colon Carcinoma rep157

description: miRBase database (Release 19.0)

value: Subject 162


title: Colon Normal Mucosa rep141

description: miRBase database (Release 19.0)

value: Subject 160

value: Female


title: Colon Normal Mucosa rep142

description: miRBase database (Release 19.0)

value: Subject 161

value: Normal Mucosa


title: Colon Normal Mucosa rep140

description: miRBase database (Release 19.0)

value: Subject 159


title: Colon Carcinoma rep154

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep156

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Carcinoma rep155

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep143

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep144

description: miRBase database (Release 19.0)

value: Subject 163


title: Colon Carcinoma rep152

description: miRBase database (Release 19.0)

value: Subject 157

value: Male


title: Colon Normal Mucosa rep139

description: miRBase database (Release 19.0)

value: Distal


title: Colon Adenoma rep019

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Carcinoma rep151

description: miRBase database (Release 19.0)

value: Subject 156


title: Colon Normal Mucosa rep137

description: miRBase database (Release 19.0)

value: Subject 155


title: Colon Normal Mucosa rep147

description: miRBase database (Release 19.0)

value: Subject 166


title: Colon Normal Mucosa rep138

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep150

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Normal Mucosa rep146

description: miRBase database (Release 19.0)

value: Subject 165


title: Colon Carcinoma rep158

description: miRBase database (Release 19.0)


title: Colon Adenoma rep018

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep149

description: miRBase database (Release 19.0)

value: Subject 154


title: Colon Adenoma rep017

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep136

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep148

description: miRBase database (Release 19.0)

value: Subject 153


title: Colon Normal Mucosa rep135

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep147

description: miRBase database (Release 19.0)

value: Subject 152

value: Female


title: Colon Normal Mucosa rep134

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Carcinoma rep146

description: miRBase database (Release 19.0)

value: Subject 151

value: Proximal


title: Colon Carcinoma rep145

description: miRBase database (Release 19.0)

value: Subject 150

value: Colon


title: Colon Normal Mucosa rep133

description: miRBase database (Release 19.0)

value: Male


title: Colon Carcinoma rep144

description: miRBase database (Release 19.0)

value: Subject 149


title: Colon Carcinoma rep205

description: miRBase database (Release 19.0)

value: Subject 212

value: Distal


title: Colon Normal Mucosa rep132

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep131

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep142

description: miRBase database (Release 19.0)

value: Subject 147


title: Colon Carcinoma rep141

description: miRBase database (Release 19.0)

value: Subject 146


title: Colon Normal Mucosa rep129

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep139

description: miRBase database (Release 19.0)

value: Subject 144

value: Carcinoma


title: Colon Normal Mucosa rep125

description: miRBase database (Release 19.0)

value: Subject 143


title: Colon Normal Mucosa rep126

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep128

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep127

description: miRBase database (Release 19.0)

value: Subject 145


title: Colon Adenoma rep015

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Carcinoma rep137

description: miRBase database (Release 19.0)

value: Subject 142


title: Colon Carcinoma rep138

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep124

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Carcinoma rep136

description: miRBase database (Release 19.0)

value: Subject 141


title: Colon Adenoma rep014

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Normal Mucosa rep123

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep135

description: miRBase database (Release 19.0)

value: Subject 140


title: Colon Adenoma rep016

description: miRBase database (Release 19.0)

value: Subject 148

value: Colon


title: Colon Normal Mucosa rep130

description: miRBase database (Release 19.0)

value: Male


title: Colon Carcinoma rep143

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep140

description: miRBase database (Release 19.0)

value: Female


title: Colon Normal Mucosa rep122

description: miRBase database (Release 19.0)

value: Distal


title: Colon Carcinoma rep134

description: miRBase database (Release 19.0)

value: Subject 139


title: Colon Carcinoma rep133

description: miRBase database (Release 19.0)

value: Subject 138


title: Colon Carcinoma rep132

description: miRBase database (Release 19.0)

value: Subject 137


title: Colon Normal Mucosa rep121

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep120

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep129

description: miRBase database (Release 19.0)

value: Subject 134

value: Carcinoma


title: Colon Carcinoma rep131

description: miRBase database (Release 19.0)

value: Subject 136


title: Colon Normal Mucosa rep119

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep130

description: miRBase database (Release 19.0)

value: Subject 135


title: Colon Normal Mucosa rep117

description: miRBase database (Release 19.0)


title: Colon Serrated Sessile Polyp rep001

description: miRBase database (Release 19.0)

value: Serrated Sessile Polyp


title: Colon Normal Mucosa rep118

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Carcinoma rep126

description: miRBase database (Release 19.0)

value: Subject 131


title: Colon Carcinoma rep127

description: miRBase database (Release 19.0)

value: Subject 132

value: Proximal


title: Colon Carcinoma rep124

description: miRBase database (Release 19.0)

value: Subject 129


title: Colon Adenoma rep013

description: miRBase database (Release 19.0)

value: Colon

value: Adenoma


title: Colon Normal Mucosa rep114

description: miRBase database (Release 19.0)

value: Subject 130

value: Female


title: Colon Adenoma rep012

description: miRBase database (Release 19.0)

value: Male

value: Distal


title: Colon Normal Mucosa rep112

description: miRBase database (Release 19.0)

value: Subject 128


title: Colon Normal Mucosa rep115

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep113

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep111

description: miRBase database (Release 19.0)

value: Subject 127


title: Colon Carcinoma rep128

description: miRBase database (Release 19.0)

value: Subject 133

value: Carcinoma


title: Colon Normal Mucosa rep116

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep122

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep123

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep125

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep121

description: miRBase database (Release 19.0)

value: Subject 126


title: Colon Normal Mucosa rep110

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep109

description: miRBase database (Release 19.0)

value: Subject 125


title: Colon Normal Mucosa rep108

description: miRBase database (Release 19.0)

value: Subject 124

value: Normal Mucosa


title: Colon Carcinoma rep119

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep115

description: miRBase database (Release 19.0)

value: Subject 120


title: Colon Adenoma rep011

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep107

description: miRBase database (Release 19.0)

value: Subject 122


title: Colon Carcinoma rep118

description: miRBase database (Release 19.0)

value: Subject 123

value: Proximal


title: Colon Carcinoma rep120

description: miRBase database (Release 19.0)

value: Colon


title: Colon Carcinoma rep116

description: miRBase database (Release 19.0)

value: Subject 121


title: Colon Carcinoma rep117

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep106

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep114

description: miRBase database (Release 19.0)

value: Subject 119


title: Colon Normal Mucosa rep105

description: miRBase database (Release 19.0)

value: Male


title: Colon Carcinoma rep113

description: miRBase database (Release 19.0)

value: Subject 118

value: Female

value: Distal


title: Colon Adenoma rep010

description: miRBase database (Release 19.0)

value: Subject 117

value: Adenoma


title: Colon Normal Mucosa rep104

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep103

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep112

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Carcinoma rep111

description: miRBase database (Release 19.0)

value: Subject 116


title: Colon Carcinoma rep109

description: miRBase database (Release 19.0)

value: Subject 114


title: Colon Normal Mucosa rep102

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep099

description: miRBase database (Release 19.0)

value: Subject 113


title: Colon Carcinoma rep110

description: miRBase database (Release 19.0)

value: Subject 115


title: Colon Carcinoma rep107

description: miRBase database (Release 19.0)

value: Subject 112


title: Colon Carcinoma rep108

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Normal Mucosa rep100

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep101

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep098

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep106

description: miRBase database (Release 19.0)

value: Subject 111


title: Colon Normal Mucosa rep097

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep095

description: miRBase database (Release 19.0)

value: Subject 109


title: Colon Normal Mucosa rep094

description: miRBase database (Release 19.0)

value: Subject 108


title: Colon Carcinoma rep105

description: miRBase database (Release 19.0)

value: Subject 110


title: Colon Carcinoma rep103

description: miRBase database (Release 19.0)

value: Subject 107

value: Male


title: Colon Carcinoma rep102

description: miRBase database (Release 19.0)

value: Subject 106

value: Female


title: Colon Normal Mucosa rep092

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep096

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep101

description: miRBase database (Release 19.0)

value: Subject 105

value: Carcinoma


title: Colon Normal Mucosa rep093

description: miRBase database (Release 19.0)

value: Distal


title: Colon Carcinoma rep104

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep100

description: miRBase database (Release 19.0)

value: Subject 104


title: Colon Carcinoma rep099

description: miRBase database (Release 19.0)

value: Subject 103


title: Colon Normal Mucosa rep088

description: miRBase database (Release 19.0)

value: Subject 102

value: Normal Mucosa


title: Colon Normal Mucosa rep087

description: miRBase database (Release 19.0)

value: Subject 101

value: Proximal


title: Colon Carcinoma rep097

description: miRBase database (Release 19.0)

value: Colon


title: Colon Carcinoma rep096

description: miRBase database (Release 19.0)

value: Subject 100


title: Colon Carcinoma rep098

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep089

description: miRBase database (Release 19.0)


title: Colon Adenoma rep009

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Normal Mucosa rep085

description: miRBase database (Release 19.0)

value: Subject 098


title: Colon Normal Mucosa rep086

description: miRBase database (Release 19.0)

value: Subject 099


title: Colon Normal Mucosa rep084

description: miRBase database (Release 19.0)

value: Subject 097


title: Colon Normal Mucosa rep091

description: miRBase database (Release 19.0)

value: Male


title: Colon Carcinoma rep093

description: miRBase database (Release 19.0)

value: Female


title: Colon Normal Mucosa rep083

description: miRBase database (Release 19.0)

value: Subject 096


title: Colon Normal Mucosa rep090

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep095

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Carcinoma rep090

description: miRBase database (Release 19.0)

value: Subject 094

value: Distal


title: Colon Carcinoma rep092

description: miRBase database (Release 19.0)


title: Colon Adenoma rep008

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep081

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep091

description: miRBase database (Release 19.0)

value: Subject 095


title: Colon Carcinoma rep089

description: miRBase database (Release 19.0)

value: Subject 093


title: Colon Carcinoma rep088

description: miRBase database (Release 19.0)

value: Subject 092


title: Colon Normal Mucosa rep080

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep079

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep087

description: miRBase database (Release 19.0)

value: Subject 091


title: Colon Carcinoma rep094

description: miRBase database (Release 19.0)

value: Colon


title: Colon Carcinoma rep086

description: miRBase database (Release 19.0)

value: Subject 090


title: Colon Normal Mucosa rep078

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep075

description: miRBase database (Release 19.0)

value: Subject 088


title: Colon Carcinoma rep084

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep082

description: miRBase database (Release 19.0)

value: Subject 086


title: Colon Normal Mucosa rep076

description: miRBase database (Release 19.0)

value: Subject 089


title: Colon Carcinoma rep083

description: miRBase database (Release 19.0)

value: Subject 087


title: Colon Normal Mucosa rep073

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep082

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep080

description: miRBase database (Release 19.0)

value: Subject 083

value: Proximal


title: Colon Carcinoma rep081

description: miRBase database (Release 19.0)

value: Subject 085

value: Female


title: Colon Normal Mucosa rep071

description: miRBase database (Release 19.0)

value: Subject 084

value: Male


title: Colon Normal Mucosa rep072

description: miRBase database (Release 19.0)

value: Distal


title: Colon Normal Mucosa rep069

description: miRBase database (Release 19.0)

value: Subject 081


title: Colon Carcinoma rep079

description: miRBase database (Release 19.0)

value: Subject 082

value: Carcinoma


title: Colon Normal Mucosa rep070

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Carcinoma rep078

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep065

description: miRBase database (Release 19.0)

value: Subject 077


title: Colon Adenoma rep007

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Normal Mucosa rep068

description: miRBase database (Release 19.0)

value: Subject 080


title: Colon Carcinoma rep077

description: miRBase database (Release 19.0)

value: Subject 079


title: Colon Carcinoma rep076

description: miRBase database (Release 19.0)

value: Subject 078


title: Colon Normal Mucosa rep064

description: miRBase database (Release 19.0)

value: Subject 076


title: Colon Normal Mucosa rep074

description: miRBase database (Release 19.0)

value: Subject 087


title: Colon Normal Mucosa rep066

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Carcinoma rep074

description: miRBase database (Release 19.0)

value: Female


title: Colon Normal Mucosa rep077

description: miRBase database (Release 19.0)

value: Subject 090


title: Colon Carcinoma rep073

description: miRBase database (Release 19.0)

value: Subject 075

value: Male


title: Colon Carcinoma rep085

description: miRBase database (Release 19.0)

value: Subject 089

value: Distal


title: Colon Normal Mucosa rep063

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep072

description: miRBase database (Release 19.0)

value: Subject 074

value: Carcinoma


title: Colon Carcinoma rep068

description: miRBase database (Release 19.0)

value: Subject 069

value: Colon


title: Colon Normal Mucosa rep057

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep059

description: miRBase database (Release 19.0)

value: Subject 071


title: Colon Carcinoma rep070

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep060

description: miRBase database (Release 19.0)

value: Subject 072


title: Colon Normal Mucosa rep061

description: miRBase database (Release 19.0)

value: Subject 073


title: Colon Carcinoma rep071

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep069

description: miRBase database (Release 19.0)

value: Subject 070


title: Colon Normal Mucosa rep067

description: miRBase database (Release 19.0)

value: Subject 079


title: Colon Normal Mucosa rep058

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Carcinoma rep067

description: miRBase database (Release 19.0)

value: Subject 068

value: Female


title: Colon Carcinoma rep075

description: miRBase database (Release 19.0)

value: Subject 077


title: Colon Normal Mucosa rep056

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep064

description: miRBase database (Release 19.0)

value: Subject 065


title: Colon Carcinoma rep066

description: miRBase database (Release 19.0)

value: Subject 067

value: Male


title: Colon Normal Mucosa rep055

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep054

description: miRBase database (Release 19.0)

value: Subject 066

value: Distal


title: Colon Normal Mucosa rep053

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep062

description: miRBase database (Release 19.0)

value: Subject 074


title: Colon Carcinoma rep062

description: miRBase database (Release 19.0)

value: Subject 063

value: Colon

value: Carcinoma


title: Colon Carcinoma rep059

description: miRBase database (Release 19.0)

value: Subject 060


title: Colon Carcinoma rep060

description: miRBase database (Release 19.0)

value: Subject 061


title: Colon Normal Mucosa rep051

description: miRBase database (Release 19.0)

value: Subject 062

value: Normal Mucosa


title: Colon Normal Mucosa rep050

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Adenoma rep006

description: miRBase database (Release 19.0)

value: Subject 064

value: Adenoma


title: Colon Normal Mucosa rep049

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep047

description: miRBase database (Release 19.0)

value: Subject 058

value: Female


title: Colon Carcinoma rep056

description: miRBase database (Release 19.0)

value: Subject 057


title: Colon Adenoma rep004

description: miRBase database (Release 19.0)

value: Male


title: Colon Normal Mucosa rep048

description: miRBase database (Release 19.0)

value: Subject 059


title: Colon Adenoma rep005

description: miRBase database (Release 19.0)

value: Distal


title: Colon Carcinoma rep058

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep065

description: miRBase database (Release 19.0)

value: Subject 066


title: Colon Carcinoma rep057

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep046

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep055

description: miRBase database (Release 19.0)

value: Subject 056


title: Colon Carcinoma rep053

description: miRBase database (Release 19.0)

value: Subject 054

value: Colon


title: Colon Normal Mucosa rep045

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep044

description: miRBase database (Release 19.0)

value: Subject 055


title: Colon Normal Mucosa rep052

description: miRBase database (Release 19.0)

value: Subject 063


title: Colon Carcinoma rep061

description: miRBase database (Release 19.0)

value: Subject 062

value: Carcinoma


title: Colon Carcinoma rep063

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep052

description: miRBase database (Release 19.0)

value: Subject 053


title: Colon Adenoma rep003

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep043

description: miRBase database (Release 19.0)

value: Normal Mucosa

value: Proximal


title: Colon Normal Mucosa rep041

description: miRBase database (Release 19.0)

value: Subject 051


title: Colon Carcinoma rep050

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep042

description: miRBase database (Release 19.0)

value: Subject 052

value: Female


title: Colon Carcinoma rep051

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep039

description: miRBase database (Release 19.0)

value: Subject 049

value: Male


title: Colon Carcinoma rep048

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep049

description: miRBase database (Release 19.0)

value: Subject 050

value: Distal


title: Colon Carcinoma rep047

description: miRBase database (Release 19.0)

value: Subject 048


title: Colon Carcinoma rep054

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep038

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep046

description: miRBase database (Release 19.0)

value: Subject 047


title: Colon Normal Mucosa rep037

description: miRBase database (Release 19.0)

value: Colon


title: Colon Normal Mucosa rep034

description: miRBase database (Release 19.0)

value: Subject 044


title: Colon Carcinoma rep043

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep042

description: miRBase database (Release 19.0)

value: Subject 043


title: Colon Carcinoma rep040

description: miRBase database (Release 19.0)

value: Subject 040


title: Colon Normal Mucosa rep033

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep045

description: miRBase database (Release 19.0)

value: Subject 046

value: Carcinoma


title: Colon Carcinoma rep039

description: miRBase database (Release 19.0)

value: Subject 039


title: Colon Normal Mucosa rep036

description: miRBase database (Release 19.0)

value: Normal Mucosa

value: Proximal


title: Colon Carcinoma rep044

description: miRBase database (Release 19.0)

value: Subject 045


title: Colon Carcinoma rep041

description: miRBase database (Release 19.0)

value: Subject 042


title: Colon Normal Mucosa rep030

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep031

description: miRBase database (Release 19.0)

value: Subject 041


title: Colon Normal Mucosa rep032

description: miRBase database (Release 19.0)

value: Male


title: Colon Normal Mucosa rep035

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep040

description: miRBase database (Release 19.0)

value: Subject 050


title: Colon Normal Mucosa rep029

description: miRBase database (Release 19.0)

value: Female

value: Distal


title: Colon Carcinoma rep038

description: miRBase database (Release 19.0)

value: Subject 038


title: Colon Normal Mucosa rep027

description: miRBase database (Release 19.0)

value: Subject 037

value: Colon


title: Colon Normal Mucosa rep028

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep037

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep026

description: miRBase database (Release 19.0)

value: Subject 036


title: Colon Carcinoma rep035

description: miRBase database (Release 19.0)

value: Subject 035


title: Colon Adenoma rep002

description: miRBase database (Release 19.0)

value: Adenoma


title: Colon Carcinoma rep034

description: miRBase database (Release 19.0)

value: Subject 034

value: Carcinoma


title: Colon Normal Mucosa rep025

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Adenoma rep001

description: miRBase database (Release 19.0)

value: Proximal


title: Colon Carcinoma rep033

description: miRBase database (Release 19.0)

value: Subject 033


title: Colon Carcinoma rep032

description: miRBase database (Release 19.0)

value: Subject 032


title: Colon Normal Mucosa rep019

description: miRBase database (Release 19.0)

value: Subject 026


title: Colon Carcinoma rep036

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep025

description: miRBase database (Release 19.0)

value: Subject 025

value: Male


title: Colon Carcinoma rep030

description: miRBase database (Release 19.0)

value: Subject 030


title: Colon Normal Mucosa rep022

description: miRBase database (Release 19.0)

value: Distal


title: Colon Normal Mucosa rep024

description: miRBase database (Release 19.0)

value: Female


title: Colon Carcinoma rep031

description: miRBase database (Release 19.0)

value: Subject 031


title: Colon Carcinoma rep028

description: miRBase database (Release 19.0)

value: Subject 028

value: Colon


title: Colon Carcinoma rep029

description: miRBase database (Release 19.0)

value: Subject 029


title: Colon Normal Mucosa rep016

description: miRBase database (Release 19.0)

value: Subject 023


title: Colon Normal Mucosa rep021

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep026

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep023

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep024

description: miRBase database (Release 19.0)

value: Subject 024


title: Colon Normal Mucosa rep018

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep020

description: miRBase database (Release 19.0)

value: Subject 027


title: Colon Carcinoma rep023

description: miRBase database (Release 19.0)

value: Carcinoma


title: Colon Normal Mucosa rep017

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep015

description: miRBase database (Release 19.0)

value: Subject 022

value: Proximal


title: Colon Normal Mucosa rep014

description: miRBase database (Release 19.0)

value: Subject 019


title: Colon Carcinoma rep019

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep022

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep020

description: miRBase database (Release 19.0)

value: Subject 020


title: Colon Carcinoma rep021

description: miRBase database (Release 19.0)

value: Subject 021


title: Colon Carcinoma rep017

description: miRBase database (Release 19.0)

value: Subject 017

value: Male


title: Colon Normal Mucosa rep013

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep027

description: miRBase database (Release 19.0)

value: Distal


title: Colon Carcinoma rep016

description: miRBase database (Release 19.0)

value: Subject 016

value: Female


title: Colon Normal Mucosa rep012

description: miRBase database (Release 19.0)

value: Colon


title: Colon Carcinoma rep015

description: miRBase database (Release 19.0)

value: Subject 015


title: Colon Carcinoma rep014

description: miRBase database (Release 19.0)

value: Subject 014


title: Colon Normal Mucosa rep011

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep009

description: miRBase database (Release 19.0)

value: Subject 009


title: Colon Normal Mucosa rep007

description: miRBase database (Release 19.0)

value: Subject 011


title: Colon Carcinoma rep012

description: miRBase database (Release 19.0)

value: Subject 012

value: Carcinoma


title: Colon Carcinoma rep010

description: miRBase database (Release 19.0)

value: Subject 010


title: Colon Normal Mucosa rep004

description: miRBase database (Release 19.0)

value: Subject 007

value: Normal Mucosa

value: Proximal


title: Colon Carcinoma rep011

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep007

description: miRBase database (Release 19.0)


title: Colon Normal Mucosa rep006

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep006

description: miRBase database (Release 19.0)

value: Subject 006


title: Colon Carcinoma rep008

description: miRBase database (Release 19.0)

value: Subject 008


title: Colon Carcinoma rep013

description: miRBase database (Release 19.0)

value: Subject 013


title: Colon Carcinoma rep018

description: miRBase database (Release 19.0)

value: Subject 018

value: Distal


title: Colon Normal Mucosa rep003

description: miRBase database (Release 19.0)

value: Female


title: Colon Carcinoma rep004

description: miRBase database (Release 19.0)

value: Subject 004

value: Colon


title: Colon Carcinoma rep005

description: miRBase database (Release 19.0)

value: Subject 005


title: Colon Normal Mucosa rep002

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep002

description: miRBase database (Release 19.0)

value: Subject 002

value: Male


title: Colon Carcinoma rep001

description: miRBase database (Release 19.0)

value: Subject 001


title: Colon Normal Mucosa rep001

description: miRBase database (Release 19.0)


title: Colon Carcinoma rep003

description: miRBase database (Release 19.0)

value: Subject 003

value: Carcinoma


title: Colon Normal Mucosa rep010

description: miRBase database (Release 19.0)

value: Subject 014


title: Colon Normal Mucosa rep005

description: miRBase database (Release 19.0)

value: Normal Mucosa


title: Colon Normal Mucosa rep008

description: miRBase database (Release 19.0)

value: Subject 012


title: Third instar larval testis dissociated with papain rep 4.

status: Public on Jun 08 2018

type: SRA

city: Bethesda

first: Brian

last: Oliver

state: MD

address: 50 South Drive

department: LBG

institute: NIDDK, NIH

description:
F9_TDP
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed and then dissociated by enzymatically treating with Papain and Collagenase.

library_source: transcriptomic

data_processing:
We used RTA v1.13 (Illumina, San Diego, CA) for base calling and bcl2fastq v1.8 (Illumina, San Diego, CA) to de-multiplex and convert BCL to FASTQ format.
We created a reference by concatenating the Drosophila melanogaster genome assembly release 6 plus ISO1 MT (GCA_000001215.4) and ERCC (SRM2374) from NIST and processed as described in (Jiang et al. 2011. PMID: 21816910 and Lee et al. 2016 PMID: 27512518). We generated a set of known splice sites using FlyBase r6.16 and aligned reads with Hisat2 v2.1.0 (Kim et al. 2015. PMID: 25751142) using default settings except --max-introlen 300000 and --known-splicesite-infile. Multi-mapping reads and low quality alignments were removed using Samtools v1.7 (Li et al. 2009. PMID: 19505943) -q 20 prior to calculating gene coverage.
We created a set of gene level counts using featureCounts v1.6.1 (Liao et al., 2014. PMID: 24227677) with default options except (-s 2) to create strand specific read counts using the FlyBase r6.16 GTF concatenated with a GTF generated for ERCC. We also generated unstranded (-s 0) intergenic counts by using a custom GTF based on intergenic regions in FlyBase r6.16.
Finally, strand specific browser tracks (BigWigs) were created using DeepTools v3.0.2 (Ramírez et al. 2016. PMID: 27079975) with --minMappingQuality 20, --ignoreDuplicates, --smoothLength 10, --normalizeUsing RPKM, and --filterRNAstrand forward or --filterRNAstrand reverse.
Genome_build: Drosophila melanogaster Release 6 plus ISO1 MT (GCA_000001215.4).
Supplementary_files_format_and_content: *.pos.bigwig: Is a first strand bigWig file generated using DeepTools v3.0.2 using options ( --minMappingQuality 20, --ignoreDuplicates, --smoothLength 10, --normalizeUsing RPKM, and --filterRNAstrand forward)
*.neg.bigwig: Is a second strand bigWig file generated using DeepTools v3.0.2 using options ( --minMappingQuality 20, --ignoreDuplicates, --smoothLength 10, --normalizeUsing RPKM, and --filterRNAstrand reverse)
*.featurecounts.txt: Contains gene level + ERCC level raw counts generated using featureCounts v1.6.1 with options (-s 2)
*.featurecounts.intergenic.txt: Contains intergenic level raw counts generated using featureCounts v1.6.1 with options (-s 0)

molecule: polyA RNA

organism: Drosophila melanogaster

source_name: tissue

growth_protocol: We grew w1118 flies (FBst0005905; Bloomington stock center, Bloomington, IN) on Fly food A (LabExpress Ann Arbor, MI) at 25°C in constant light and 60% relative humidity. We collected eggs from six mated females every 8-16 hr, and allowed them to develop until the late third instar larval stage, just after they are immobilized and prior to larval anterior spiracle extension. Additionally, we monitored for gut clearance by providing second and third instar larvae with yeast/water paste containing 0.5 mg/ml Sulforhodamine B sodium salt (Sigma-Aldrich, Cat. No. S1402-25G. St. Louis, MO), and selected individuals with mostly cleared guts with the food only in mid and hindgut.

extract_protocol:
We dissected late third instar larvae in PBS at 22°C (Gibco Life Technologies, Carlsbad, CA). Each sample was collected in 350 μl RLT buffer (Qiagen, Cat. No. 79216. Valencia, CA), vortexed two times for 30 sec with a 30 sec interval and quick frozen in a dry ice ethanol bath and stored at -80°C until RNA extraction. We collected testes with the fatbody attached just around the gonads (pool of 10 testes). We collected testes without fatbody by enzymatically removing fatbody by treating with 0.075 mg/ml Papain (Sigma-Aldrich, St. Louis, MO) and 0.075 mg/ml Collagenase enzymes (Sigma-Aldrich, St. Louis, MO) in PBS in 1.5ml eppendorf tube for 3 min with gentle vortexing by flicking the tube with a forefinger (pool of 15 testes). We collected fatbody alone by dissecting the fatbody around the gonads (pool from 10 testes). We dissociated testes after removing the fatbody either by treating with 0.5% Trypsin (ThermoFisher, Walkersville, MD) and 2 mg/ml Collagenase (Sigma-Aldrich, St. Louis, MO) in PBS for 30 min at 22°C or with 2 mg/ml Papain and 2 mg/ml Collagenase enzymes (pools of 15 testes). To obtain maximum dissociation, testes were teased apart with tungsten needles (Fine Scientific Tools, Foster City, CA) and pipetted several times. We pelleted cells using a table top centrifuge at 0.9 g for 5 min and resuspended in 350 μl RLT buffer.       We extracted total RNA using RNeasy 96 kit (Qiagen, Cat. No. 1019545. Valencia, CA) and followed the manufacturer’s protocol. RNA was quantified using Quant-iT RiboGreen quantification kit (Life Technologies, Cat. No. R11490. Carlsbad, CA). RNA was stored in -80°C until the library preparation.
We used 200 ng of total RNA and performed RNA-seq library preparation  according to Lee et al (doi:10.1101/032920 and Gene Expression Omnibus GSE73920). Briefly, PolyA+ selection was done using Dynabeads Oligo(dT)25 (Life technologies, Grand Island, NY). Selected mRNA was fragmented, RT was performed with the second strand synthesis by incorporating dUTPs. We used External RNA control consortium spike-ins pools 78A and 78B (SRM2374, Zook et al., 2012. PMID: 22859977) transcribed from standard reference. We used barcoded adaptors for indexing the libraries (Qiagen, 98 TruSeq v2 kit barcoded adaptors, Valencia, CA). We sequenced stranded 42 multiplexed libraries using a single-ended 50 bp strategy on one lane using a HiSeq Illumina 2500 (Illumina, San Diego, CA).

tag: strain

value: male

tag: developmental stage

value: Late third instar larval stage:immobilized, partial gut clearance as dyed yeast paste exist partly in midgut and hindgut, prior to anterior spiracle eversion.

tag: spike-in

value: ERCC (SRM2374) 78A

value: F


title: Colon Normal Mucosa rep009

description: miRBase database (Release 19.0)

value: Subject 013

value: Proximal


title: Third instar larval testis cleaned of fat body with papain rep 2.

description:
B6_TCP
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed by enzymatically treating with Papain and Collagenase enzymes.

value: ERCC (SRM2374) 78B

value: B


title: Third instar larval testis cleaned of fat body with papain rep 3.

description:
B7_TCP
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed by enzymatically treating with Papain and Collagenase enzymes.


title: Third instar larval testis cleaned of fat body with papain rep 1.

description:
B5_TCP
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed by enzymatically treating with Papain and Collagenase enzymes.


title: Third instar larval testis dissociated with trypsin rep 2.

description:
C2_TDT
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed and then dissociated by enzymatically treating with Trypsin and Collagenase.

value: C


title: Third instar larval testis dissociated with trypsin rep 4.

description:
C4_TDT
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed and then dissociated by enzymatically treating with Trypsin and Collagenase.


title: Third instar larval testis dissociated with trypsin rep 1.

description:
C1_TDT
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed and then dissociated by enzymatically treating with Trypsin and Collagenase.


title: Third instar larval testis dissociated with papain rep 1.

description:
F10_TDP
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed and then dissociated by enzymatically treating with Papain and Collagenase.


title: Third instar larval testis dissociated with trypsin rep 3.

description:
C3_TDT
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed and then dissociated by enzymatically treating with Trypsin and Collagenase.


title: Third instar larval testis with attached fat body rep 1.

description:
A1_TF
Drosophila melanogaster (7227)
Pool of 10 larval testes with surrouding attached fatbody.

value: A


title: Third instar larval testis with attached fat body rep 4.

description:
A4_TF
Drosophila melanogaster (7227)
Pool of 10 larval testes with surrouding attached fatbody.


title: Third instar larval testis with attached fat body rep 3.

description:
A3_TF
Drosophila melanogaster (7227)
Pool of 10 larval testes with surrouding attached fatbody.


title: Third instar larval fat body from around testis rep 3.

description:
A12_FT
Drosophila melanogaster (7227)
Fatbody dissected from 10 larval testes.

value: fat cell (FBbt:00046052)


title: Third instar larval fat body from around testis rep 4.

description:
A9_FT
Drosophila melanogaster (7227)
Fatbody dissected from 10 larval testes.


title: Third instar larval testis with attached fat body rep 2.

description:
A2_TF
Drosophila melanogaster (7227)
Pool of 10 larval testes with surrouding attached fatbody.


title: Third instar larval fat body from around testis rep 1.

description:
A10_FT
Drosophila melanogaster (7227)
Fatbody dissected from 10 larval testes.


title: Third instar larval testis dissociated with papain rep 3.

description:
F12_TDP
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed and then dissociated by enzymatically treating with Papain and Collagenase.


title: hsm1mace

status: Public on May 15 2018

city: Greifswald

first: Stefan

last: Simm

address: Walter-Rathenau-Straße 48

department: Bioinformatics

country: Germany

institute: University Medicine Greifswald

data_processing:
FastQC preprocessing
reads were aligned by NextGenMap (version 0.4.12, Sedlazeck et al. 2013) using the following alterations of default parameters: --kmer-skip 1, --silent-clip and --no-unal
Read counts were determined for each annotated gene using HTSeq
TPM (Transcripts Per Million) values were calculated for each gene by dividing the read count of a gene by the total number of aligned reads within the library and multiplying it with one million. Next, all TPM values below a value of 5 were set to zero. The cut-off of 5 was determined by analyzing the expression of genes which are not expected to be detected in pollen.
Genome_build: Solanum lycopersicum cv. Heinz version SL2.50
Supplementary_files_format_and_content: 12 csvfiles (.csv) representing the read counts of all genes in the samples. 1 csvfile containing the TPM values for all genes in the 12 samples (cut-off of 5 already applied).

organism: Solanum lycopersicum

source_name: mature heat stress

extract_protocol:
Pollen was isolated from anthers by squeezing the stamens with a pipette tip 200 μl in the germination solution, followed by vortexing for 15 seconds. Pollen was passed through gauze cloth, washed twice with germination solution, and centrifuged at 4°C for 2 min at 100x g, followed by short spin to sediment the isolated pollen grains. The pellet was resuspended in 200 μl of germination solution, followed by centrifugation at 100 g for 2 minutes at 4°C, and followed by short spin. The supernatant was discarded and samples preserved in the liquid nitrogen. RNA was isolated from two biological replicates per developmental stage and condition using the Macherey-Nagel NucleoSpin miRNA isolation kit according to manufacturer’s protocol. From the two resulting fractions the one comprising the large RNA (> 200 nt) was used for the next steps.
The MACE was carried out according to the protocol described by Zawada et al. 2014 (PMID: 24184689): MACE libraries were prepared using the proprietary TrueQuant technology for elimination of PCR bias (Zawada et al. 2014). Poly-adenylated RNA was extracted with Dynabeads mRNA Purification kit (Life Technologies) from large RNA (>200 nt) and reverse transcribed with SuperScript Double-Stranded cDNA Synthesis Kit (Life Technologies) using biotinylated poly(dT) primers. Fragmentation of cDNA was conducted with Bioruptor (Diagenode) which yielded an average size of 250 bp. Biotinylated cDNA ends were captured by Dynabeads M-270 Streptavidin Beads (Life Technologies) and ligated with T4 DNA Ligase 1 (NEB) to modified adapters (TrueQuant, GenXPro). PCR amplification was performed with KAPA HiFi Hot-Start Polymerase (KAPA Biosystems), purified by Agencourt AMPure XP beads (Beckman Coulter) and sequenced with HiSeq2000 (Illumina)
MACE (massive analysis of cDNA ends)

value: pollen developmental stage

tag: stress

value: heat stress

tag: cultivar

value: Red Setter


title: hsm2mace


title: cm2mace

source_name: mature control

value: control


title: hspm2mace

source_name: post-meiotic heat stress


title: Third instar larval testis dissociated with papain rep 2.

description:
F11_TDP
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed and then dissociated by enzymatically treating with Papain and Collagenase.


title: cm1mace


title: cpm2mace

source_name: post-meiotic control


title: hspm1mace


title: Third instar larval testis cleaned of fat body with papain rep 4.

description:
B8_TCP
Drosophila melanogaster (7227)
Pool of 15 testes with fatbody removed by enzymatically treating with Papain and Collagenase enzymes.


title: hst2mace

source_name: tetrads heat stress


title: cpm1mace


title: hst1mace


title: ct2mace

source_name: tetrads control


title: Third instar larval fat body from around testis rep 2.

description:
A11_FT
Drosophila melanogaster (7227)
Fatbody dissected from 10 larval testes.


title: Mock_8hr3

status: Public on Apr 26 2018

city: Frederick

first: Catherine

middle: E

last: Arnold

address: 1425 Porter St

department: Diagnostic Systems Division

institute: US Army Medical Research Institute of Infectious Diseases

data_processing:
dual index filter: in house software (raw reads index filtered to Q30 cutoff)
trimming : Trimmomatic-0.33 (leading:3, trailing:3, sliding window:4:15, minlen: 80, Q30 cutoff)
alignment and normalization: kallisto 0.43.0 (bootstraps: 100, default parameters)
Genome_build: Raegyp2.0
Supplementary_files_format_and_content: abundance files: h5 (contains transcript_id, length, eff_length (effective length), est_counts (estimated counts) and tpm (transcripts per million) for each gene in the transcriptome, includes bootstrap values (each h5 contains 100 bootstraps that are used for downstream differential gene expression,  length, eff_length, est_counts used to calculate tpm.)
Supplementary_files_format_and_content: annotation: gff (contains gene identifiers used in h5 files, genome coordinates, Ensembl IDs, gene symbols, etc)

organism: Rousettus aegyptiacus

source_name: R. aegyptiacus derived fibroblasts (RoNi7.1)

growth_protocol: 10% FBS DMEM, 5% CO2 and 37C

extract_protocol:
Harvested in 1x RNA Lysis/Binding Solution Concentrate (Thermo Fisher Scientific) at 3hr, 8hr and 24hr post-infection, followed by magnetic bead purification and TURBO DNase treatment using the MagMAX-96 Total RNA Isolation Kit (Ambion) according to manufacturer guidelines. RNA extractions were performed on a MagMAX Express 96 Magnetic Particle Processor (Applied Biosystems)
Libraries were generated on the Sciclone G3 Liquid Handling Robot (PerkinElmer) using the TruSeq Stranded Total RNA Library Prep Kit (Illumina). Library quality was evaluated on the Agilent 2200 TapeStation 2200 and quantified by qPCR using the KAPA Complete (Universal) qPCR kit (Kapa Biosystems) for Illumina libraries. Libraries were diluted to 12 pM and cluster generation was performed on the Illumina cBot. Libraries were sequenced on the Illumina HiSeq 2500 using the paired end 2x125 bp, dual-index format.

treatment_protocol: MOI 1.0 of Sendai (Cantell, Charles River) or mock (DMEM media alone), media changed afer 1 hour of absorption and cells incubated at 5% CO2 and 37C

tag: cell type

value: RoNi7.1 (fibroblast like kidney derived)

tag: agent

tag: passage

value: 4 to 6


title: Mock_24hr3

source_name: R. aegyptiacus derived fibroblasts (RoN7.1)


title: Mock_24hr2


title: SeV_24hr3

source_name: R. aegyptiacus derived fibroblasts (RoNi7.1), Sendai Cantell virus

value: Sendai Cantell


title: Mock_3hr1


title: Mock_3hr2


title: ct1mace


title: Mock_3hr3


title: SeV_8hr3


title: Mock_8hr1


title: SeV_24hr1


title: SeV_24hr2


title: SeV_8hr2


title: SeV_3hr2


title: SeV_3hr3

data_processing:
dual index filter: in house software (raw reads index filtered to Q30 cutoff)
trimming : Trimmomatic-0.33 (leading:3, trailing:3, sliding window:4:15, minlen: 80, Q30 cutoff)
alignment and normalization: kallisto 0.43.0 (bootstraps: 100, default paremeters)
Genome_build: Raegyp2.0
Supplementary_files_format_and_content: abundance files: h5 (contains transcript_id, length, eff_length (effective length), est_counts (estimated counts) and tpm (transcripts per million) for each gene in the transcriptome, includes bootstrap values (each h5 contains 100 bootstraps that is used for downstream differential gene expression).  length, eff_length, est_counts used to calculate tpm.  )
Supplementary_files_format_and_content: annotation: gff (contains gene identifiers used in h5 files, genome coordinants, Ensembl IDs, gene symbols, etc)

source_name: R. aegyptiacus derive fibroblasts (RoNi7.1), Sendai Cantell virus


title: SeV_3hr1


title: Mock_8hr2


title: Mock_24hr1


title: PSC d14 1

status: Public on Mar 29 2018

city: Los Angeles

first: Denis

last: Evseenko

state: CA

address: 1450 Biggy St

department: Orthopaedic Surgery

institute: University of Southern  California

data_processing:
Reads were mapped to the human genome (hg19) using RefSeq annotation
Transcript estimation was performed using RNA-Seq by Expectation Maximization method (Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC bioinformatics. 2011;12(323)
Differenential expression was performed using the EBSeq method (Leng N, Dawson JA, Thomson JA, et al. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics. 2013;29(8):1035-1043.)
Genome_build: hg19

extract_protocol:
Qiagen Micro kit
Library preparation with Kapa mRNA-Seq kit

value: 14 day differentiation


title: PSC d60 3

value: 60 day differentiation


title: PSC d14 3


title: Adult Cartilage 2

source_name: Knee

value: Knee


title: PSC d60 1


title: PSC d60 2


title: Adult Cartilage 3


title: Adolescent Cartilage 2

source_name: ankle

value: ankle


title: Adolescent Cartilage 3


title: Adolescent Cartilage 1


title: SeV_8hr1


title: wk 17 cartilage 11

value: 17 wks


title: wk 17 cartilage 15


title: Ligament 4

source_name: Anterior/Posterior Cruciate Ligament

value: Anterior/Posterior Cruciate Ligament


title: wk 17 cartilage 19


title: wk 17 cartilage 23


title: Tendon 2

source_name: Achilles Tendon

value: Achilles Tendon


title: Tendon 3


title: Embryonic Cartilage 2

source_name: hind limb bud

value: hind limb bud

value: 6 wks


title: Ligament 3


title: Bone 2

source_name: Femur

value: Femur


title: Tendon 1


title: Bone 3


title: Ligament 2


title: Embryonic Cartilage 1


title: Bone 1


title: Muscle 4

data_processing:
Reads were mapped to the human genome (hg19) using RefSeq annotation
Transcript estimation was performed using RNA-Seq by Expectation Maximization method (Li B, Dewey CN. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC bioinformatics. 2011;12(323)
Differenential expression was performed using the EBSeq method (Leng N, Dawson JA, Thomson JA, et al. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics. 2013;29(8):1035-1043.)
Genome_build: hg19
Supplementary_files_format_and_content: TPM values

source_name: Quadriceps

value: quadriceps muscle


title: Muscle 3


title: Muscle 1


title: MBE-CE-00162_72hrE2

status: Public on Feb 23 2018

city: Cambridge

first: Carolyn

last: Elya

state: MA

address: 52 Oxford Street

department: Organismic and Evolutionary Biology

institute: Harvard University

data_processing:
Fastq files were aligned as single reads to the D. melanogaster reference (r6.21), a de novo E. muscae 'Berkeley' transcriptome or a de novo E. muscae 'Berkeley' genome (NCBI PRJNA479887) using bowtie2 as described in Elya et al., 2018 (bioRxiv). Transcript abundance was estimated from the resultant .bam files using Salmon.
Genome_build: 6.21
Supplementary_files_format_and_content: dmel_expression.txt (D. melanogaster alignments), emus_transcriptome_expression.txt (E. muscae 'Berkeley' transcriptome alignments) and emus_genome_expression.txt (E. muscae 'Berkeley' genome alignments): Tables of estimated transcript abundance (transcripts per million, TPM) for each sample. Sample key for table (including accession number, original index name and sample identity) are provided as sample_key.txt.

source_name: Exposed_72 hours_Dissected brain

growth_protocol: Young, CantonS Wolbachia-free flies were exposed to Entomophthora muscae 'Berkeley' as described in Elya et al, bioRxiv 2017

extract_protocol:
Total RNA was isolated from individual whole flies or dissected brains using Trizol (Invitrogen) per manufacturer's protocol.
mRNA libraries were prepared using Illumina's RNA TruSeq v2 kit per manufacturer's protocol.
Libraries were sequenced multiplexed 18-21 samples a lane at approximately equal concentrations  and sequenced 100 PE on the Illumina HiSeq4000.

value: CantonS

tag: age

value: 1-2 days old

tag: treatment

value: Exposed

value: 72 hours

value: Dissected brain


title: MBE-CE-00162_72hrC1

source_name: Unexposed_72 hours_Dissected brain

value: Unexposed


title: MBE-CE-00162_72hrC2


title: MBE-CE-00162_72hrE3


title: MBE-CE-00162_24hrE3

source_name: Exposed_24 hours_Dissected brain

value: 24 hours


title: Muscle 2


title: MBE-CE-00162_48hrE1

source_name: Exposed_48 hours_Dissected brain

value: 48 hours


title: MBE-CE-00162_48hrC2

source_name: Unexposed_48 hours_Dissected brain


title: MBE-CE-00162_24hrC1

source_name: Unexposed_24 hours_Dissected brain


title: MBE_CE_00156_8

source_name: Infected cadaver_120 hours_Whole fly

value: 0-1 day old

value: Infected cadaver

value: 120 hours

value: Whole fly


title: MBE_CE_00155_Index6

source_name: Unexposed_48 hours_Whole fly


title: MBE_CE_00156_11

source_name: Exposed_96 hours_Whole fly

value: 96 hours


title: MBE_CE_00155_Index9

source_name: Exposed_48 hours_Whole fly


title: Embryonic Cartilage 3

value: hind limb bud


title: d2_87 (scRNA-Seq)

status: Public on Feb 15 2018

city: Rochester

first: Hu

last: Li

state: MN

address: 200 First Street, Gonda Building G19-408

department: Molecular Pharmacology & Experimental Therapeutics

institute: Mayo Clinic

description:
Fluidigm C1
GEN00028292

data_processing:
alignment TopHat v2.0.12
subRead featureCounts v1.4.6
For single cell RNA-seq data quality control, we removed those genes that had zero expression in all single cells.
Supplementary_files_format_and_content: gene expression RPKM as tab-delimited text file

source_name: day 2 differentiation of hESC

growth_protocol: hESCs are routinely maintained in E8 medium (Stem Cell Technologies). For differentiation, Advanced RPMI 1640 (Gibco) was supplemented with l-glutamine and antibiotics, with Activin A (R & D Systems) and CHIR99021 (Tocris) added to specified concentrations and time.

extract_protocol:
Single-cell whole transcriptome amplification (WTA) was performed using the Fluidigm C1 Single-Cell Auto Prep System (C1 System) as per the manufacturer’s recommendations (full details available at Fluidigm.com). Briefly, cells from each time point were single cell collected with Accutase and were resuspended at a concentration of 250 cell per μL of complete media, mixed 7:3 with C1 suspension reagent (Fluidigm), and loaded onto C1 Single-Cell Auto Prep chips (C1 chips; Fluidigm). After loading, each of the cell isolation chambers on the C1 chip was optically inspected for the presence of a cell. Subsequently, these cells were lysed and SMART-Seq (Ramskold et al., 2012) whole transcriptome amplified (WTA) products were prepared with the C1 System using the SMARTer Ultra Low RNA Kit for Illumina Sequencing (Clontech) and protocols provided by Fluidigm.
WTA products were harvested from the C1 chip, diluted to a concentration of 0.15 ng/μL, and cDNA libraries were prepared using Nextera XT DNA Sample preparation reagents (Illumina) as per the manufacturer’s recommendations. Finally, samples were sequenced deeply using either a HiSeq 2500 sequencer (50 bp paired-end reads).

value: hESC

tag: protocol

value: day 2 differentiation of hESC

tag: time


title: d2_89 (scRNA-Seq)

description:
Fluidigm C1
GEN00028294


title: d2_88 (scRNA-Seq)

description:
Fluidigm C1
GEN00028293


title: d2_86 (scRNA-Seq)

description:
Fluidigm C1
GEN00028291


title: d2_85 (scRNA-Seq)

description:
Fluidigm C1
GEN00028290


title: d2_83 (scRNA-Seq)

description:
Fluidigm C1
GEN00028288


title: d2_84 (scRNA-Seq)

description:
Fluidigm C1
GEN00028289


title: d2_82 (scRNA-Seq)

description:
Fluidigm C1
GEN00028287


title: d2_80 (scRNA-Seq)

description:
Fluidigm C1
GEN00028284


title: d2_81 (scRNA-Seq)

description:
Fluidigm C1
GEN00028286


title: d2_79 (scRNA-Seq)

description:
Fluidigm C1
GEN00028283


title: d2_77 (scRNA-Seq)

description:
Fluidigm C1
GEN00028281


title: d2_75 (scRNA-Seq)

description:
Fluidigm C1
GEN00028278


title: d2_74 (scRNA-Seq)

description:
Fluidigm C1
GEN00028277


title: d2_73 (scRNA-Seq)

description:
Fluidigm C1
GEN00028276


title: d2_72 (scRNA-Seq)

description:
Fluidigm C1
GEN00028275


title: d2_71 (scRNA-Seq)

description:
Fluidigm C1
GEN00028274


title: d2_70 (scRNA-Seq)

description:
Fluidigm C1
GEN00028273


title: d2_69 (scRNA-Seq)

description:
Fluidigm C1
GEN00028272


title: d2_67 (scRNA-Seq)

description:
Fluidigm C1
GEN00028270


title: d2_65 (scRNA-Seq)

description:
Fluidigm C1
GEN00028267


title: d2_64 (scRNA-Seq)

description:
Fluidigm C1
GEN00028266


title: d2_63 (scRNA-Seq)

description:
Fluidigm C1
GEN00028265


title: d2_61 (scRNA-Seq)

description:
Fluidigm C1
GEN00028263


title: d2_57 (scRNA-Seq)

description:
Fluidigm C1
GEN00028258


title: d2_62 (scRNA-Seq)

description:
Fluidigm C1
GEN00028264


title: d2_59 (scRNA-Seq)

description:
Fluidigm C1
GEN00028260


title: d2_58 (scRNA-Seq)

description:
Fluidigm C1
GEN00028259


title: d2_56 (scRNA-Seq)

description:
Fluidigm C1
GEN00028257


title: d2_55 (scRNA-Seq)

description:
Fluidigm C1
GEN00028256


title: d2_60 (scRNA-Seq)

description:
Fluidigm C1
GEN00028261


title: MBE-CE-00162_24hrC2


title: d2_53 (scRNA-Seq)

description:
Fluidigm C1
GEN00028254


title: d2_52 (scRNA-Seq)

description:
Fluidigm C1
GEN00028253


title: d2_51 (scRNA-Seq)

description:
Fluidigm C1
GEN00028252


title: d2_68 (scRNA-Seq)

description:
Fluidigm C1
GEN00028271


title: d2_76 (scRNA-Seq)

description:
Fluidigm C1
GEN00028279


title: d2_49 (scRNA-Seq)

description:
Fluidigm C1
GEN00028250


title: d2_47 (scRNA-Seq)

description:
Fluidigm C1
GEN00028248


title: d2_45 (scRNA-Seq)

description:
Fluidigm C1
GEN00028246


title: d2_78 (scRNA-Seq)

description:
Fluidigm C1
GEN00028282


title: d2_66 (scRNA-Seq)

description:
Fluidigm C1
GEN00028268


title: d2_44 (scRNA-Seq)

description:
Fluidigm C1
GEN00028245


title: d2_50 (scRNA-Seq)

description:
Fluidigm C1
GEN00028251


title: d2_42 (scRNA-Seq)

description:
Fluidigm C1
GEN00028243


title: d2_48 (scRNA-Seq)

description:
Fluidigm C1
GEN00028249


title: d2_41 (scRNA-Seq)

description:
Fluidigm C1
GEN00028242


title: d2_40 (scRNA-Seq)

description:
Fluidigm C1
GEN00028241


title: d2_39 (scRNA-Seq)

description:
Fluidigm C1
GEN00028240


title: d2_37 (scRNA-Seq)

description:
Fluidigm C1
GEN00028238


title: d2_34 (scRNA-Seq)

description:
Fluidigm C1
GEN00028234


title: d2_32 (scRNA-Seq)

description:
Fluidigm C1
GEN00028232


title: d2_38 (scRNA-Seq)

description:
Fluidigm C1
GEN00028239


title: d2_30 (scRNA-Seq)

description:
Fluidigm C1
GEN00028230


title: d2_29 (scRNA-Seq)

description:
Fluidigm C1
GEN00028229


title: d2_28 (scRNA-Seq)

description:
Fluidigm C1
GEN00028228


title: d2_46 (scRNA-Seq)

description:
Fluidigm C1
GEN00028247


title: d2_27 (scRNA-Seq)

description:
Fluidigm C1
GEN00028227


title: d2_31 (scRNA-Seq)

description:
Fluidigm C1
GEN00028231


title: d2_43 (scRNA-Seq)

description:
Fluidigm C1
GEN00028244


title: d2_26 (scRNA-Seq)

description:
Fluidigm C1
GEN00028226


title: d2_21 (scRNA-Seq)

description:
Fluidigm C1
GEN00028221


title: d2_20 (scRNA-Seq)

description:
Fluidigm C1
GEN00028220


title: d2_22 (scRNA-Seq)

description:
Fluidigm C1
GEN00028222


title: d2_23 (scRNA-Seq)

description:
Fluidigm C1
GEN00028223


title: d2_25 (scRNA-Seq)

description:
Fluidigm C1
GEN00028225


title: d2_18 (scRNA-Seq)

description:
Fluidigm C1
GEN00028218


title: d2_16 (scRNA-Seq)

description:
Fluidigm C1
GEN00028216


title: d2_15 (scRNA-Seq)

description:
Fluidigm C1
GEN00028215


title: d2_19 (scRNA-Seq)

description:
Fluidigm C1
GEN00028219


title: d2_17 (scRNA-Seq)

description:
Fluidigm C1
GEN00028217


title: d2_33 (scRNA-Seq)

description:
Fluidigm C1
GEN00028233


title: d2_36 (scRNA-Seq)

description:
Fluidigm C1
GEN00028237


title: d2_35 (scRNA-Seq)

description:
Fluidigm C1
GEN00028236


title: d2_12 (scRNA-Seq)

description:
Fluidigm C1
GEN00028211


title: d2_11 (scRNA-Seq)

description:
Fluidigm C1
GEN00028210


title: d2_7 (scRNA-Seq)

description:
Fluidigm C1
GEN00028205


title: d2_24 (scRNA-Seq)

description:
Fluidigm C1
GEN00028224


title: d2_9 (scRNA-Seq)

description:
Fluidigm C1
GEN00028208


title: d2_8 (scRNA-Seq)

description:
Fluidigm C1
GEN00028206


title: d2_5 (scRNA-Seq)

description:
Fluidigm C1
GEN00028203


title: d2_4 (scRNA-Seq)

description:
Fluidigm C1
GEN00028202


title: d2_3 (scRNA-Seq)

description:
Fluidigm C1
GEN00028201


title: d2_6 (scRNA-Seq)

description:
Fluidigm C1
GEN00028204


title: d2_2 (scRNA-Seq)

description:
Fluidigm C1
GEN00028200


title: d4_70 (scRNA-Seq)

description:
Fluidigm C1
GEN00028384

source_name: day 4 differentiation of hESC

value: day 4 differentiation of hESC


title: d4_67 (scRNA-Seq)

description:
Fluidigm C1
GEN00028381


title: d2_1 (scRNA-Seq)

description:
Fluidigm C1
GEN00028199


title: d4_71 (scRNA-Seq)

description:
Fluidigm C1
GEN00028385


title: d4_65 (scRNA-Seq)

description:
Fluidigm C1
GEN00028377


title: d4_74 (scRNA-Seq)

description:
Fluidigm C1
GEN00028390


title: d4_72 (scRNA-Seq)

description:
Fluidigm C1
GEN00028387


title: d4_69 (scRNA-Seq)

description:
Fluidigm C1
GEN00028383


title: d4_73 (scRNA-Seq)

description:
Fluidigm C1
GEN00028389


title: d4_64 (scRNA-Seq)

description:
Fluidigm C1
GEN00028376


title: d2_13 (scRNA-Seq)

description:
Fluidigm C1
GEN00028212


title: d4_66 (scRNA-Seq)

description:
Fluidigm C1
GEN00028378


title: d4_62 (scRNA-Seq)

description:
Fluidigm C1
GEN00028374


title: d2_10 (scRNA-Seq)

description:
Fluidigm C1
GEN00028209


title: d4_63 (scRNA-Seq)

description:
Fluidigm C1
GEN00028375


title: d2_14 (scRNA-Seq)

description:
Fluidigm C1
GEN00028213


title: d4_60 (scRNA-Seq)

description:
Fluidigm C1
GEN00028372


title: d4_58 (scRNA-Seq)

description:
Fluidigm C1
GEN00028369


title: d4_59 (scRNA-Seq)

description:
Fluidigm C1
GEN00028371


title: d4_55 (scRNA-Seq)

description:
Fluidigm C1
GEN00028366


title: d4_56 (scRNA-Seq)

description:
Fluidigm C1
GEN00028367


title: d4_54 (scRNA-Seq)

description:
Fluidigm C1
GEN00028365


title: d4_53 (scRNA-Seq)

description:
Fluidigm C1
GEN00028363


title: d4_47 (scRNA-Seq)

description:
Fluidigm C1
GEN00028356


title: d4_48 (scRNA-Seq)

description:
Fluidigm C1
GEN00028357


title: d4_45 (scRNA-Seq)

description:
Fluidigm C1
GEN00028353


title: d4_43 (scRNA-Seq)

description:
Fluidigm C1
GEN00028351


title: d4_46 (scRNA-Seq)

description:
Fluidigm C1
GEN00028355


title: d4_50 (scRNA-Seq)

description:
Fluidigm C1
GEN00028359


title: d4_51 (scRNA-Seq)

description:
Fluidigm C1
GEN00028360


title: d4_61 (scRNA-Seq)

description:
Fluidigm C1
GEN00028373


title: d4_40 (scRNA-Seq)

description:
Fluidigm C1
GEN00028345


title: d4_42 (scRNA-Seq)

description:
Fluidigm C1
GEN00028350


title: d4_39 (scRNA-Seq)

description:
Fluidigm C1
GEN00028344


title: d4_44 (scRNA-Seq)

description:
Fluidigm C1
GEN00028352


title: d4_37 (scRNA-Seq)

description:
Fluidigm C1
GEN00028342


title: d4_36 (scRNA-Seq)

description:
Fluidigm C1
GEN00028341


title: d4_41 (scRNA-Seq)

description:
Fluidigm C1
GEN00028349


title: d4_38 (scRNA-Seq)

description:
Fluidigm C1
GEN00028343


title: d4_57 (scRNA-Seq)

description:
Fluidigm C1
GEN00028368


title: d4_33 (scRNA-Seq)

description:
Fluidigm C1
GEN00028338


title: d4_32 (scRNA-Seq)

description:
Fluidigm C1
GEN00028337


title: d4_31 (scRNA-Seq)

description:
Fluidigm C1
GEN00028336


title: d4_30 (scRNA-Seq)

description:
Fluidigm C1
GEN00028334


title: d4_29 (scRNA-Seq)

description:
Fluidigm C1
GEN00028333


title: d4_28 (scRNA-Seq)

description:
Fluidigm C1
GEN00028331


title: d4_26 (scRNA-Seq)

description:
Fluidigm C1
GEN00028329


title: d4_49 (scRNA-Seq)

description:
Fluidigm C1
GEN00028358


title: d4_27 (scRNA-Seq)

description:
Fluidigm C1
GEN00028330


title: d4_20 (scRNA-Seq)

description:
Fluidigm C1
GEN00028321


title: d4_25 (scRNA-Seq)

description:
Fluidigm C1
GEN00028328


title: d4_23 (scRNA-Seq)

description:
Fluidigm C1
GEN00028326


title: d4_19 (scRNA-Seq)

description:
Fluidigm C1
GEN00028320


title: d4_16 (scRNA-Seq)

description:
Fluidigm C1
GEN00028317


title: d4_14 (scRNA-Seq)

description:
Fluidigm C1
GEN00028313


title: Adult Cartilage 4

source_name: Knee

value: Knee


title: d4_12 (scRNA-Seq)

description:
Fluidigm C1
GEN00028309


title: d4_22 (scRNA-Seq)

description:
Fluidigm C1
GEN00028323


title: d4_18 (scRNA-Seq)

description:
Fluidigm C1
GEN00028319


title: d4_35 (scRNA-Seq)

description:
Fluidigm C1
GEN00028340


title: d4_15 (scRNA-Seq)

description:
Fluidigm C1
GEN00028316


title: d4_17 (scRNA-Seq)

description:
Fluidigm C1
GEN00028318


title: d4_13 (scRNA-Seq)

description:
Fluidigm C1
GEN00028310


title: d4_34 (scRNA-Seq)

description:
Fluidigm C1
GEN00028339


title: d4_9 (scRNA-Seq)

description:
Fluidigm C1
GEN00028306


title: d4_11 (scRNA-Seq)

description:
Fluidigm C1
GEN00028308


title: d4_10 (scRNA-Seq)

description:
Fluidigm C1
GEN00028307


title: d4_7 (scRNA-Seq)

description:
Fluidigm C1
GEN00028304


title: d4_5 (scRNA-Seq)

description:
Fluidigm C1
GEN00028299


title: d4_8 (scRNA-Seq)

description:
Fluidigm C1
GEN00028305


title: d4_3 (scRNA-Seq)

description:
Fluidigm C1
GEN00028297


title: d4_4 (scRNA-Seq)

description:
Fluidigm C1
GEN00028298


title: d4_6 (scRNA-Seq)

description:
Fluidigm C1
GEN00028303


title: d4_24 (scRNA-Seq)

description:
Fluidigm C1
GEN00028327


title: d4_2 (scRNA-Seq)

description:
Fluidigm C1
GEN00028296


title: d4_21 (scRNA-Seq)

description:
Fluidigm C1
GEN00028322


title: d4_1 (scRNA-Seq)

description:
Fluidigm C1
GEN00028295


title: d1_87 (scRNA-Seq)

description:
Fluidigm C1
GEN00026923

source_name: day 1 differentiation of hESC

value: day 1 differentiation of hESC


title: d1_80 (scRNA-Seq)

description:
Fluidigm C1
GEN00026915


title: d1_81 (scRNA-Seq)

description:
Fluidigm C1
GEN00026916


title: d1_86 (scRNA-Seq)

description:
Fluidigm C1
GEN00026922


title: d1_88 (scRNA-Seq)

description:
Fluidigm C1
GEN00026924


title: d1_90 (scRNA-Seq)

description:
Fluidigm C1
GEN00026926


title: d1_85 (scRNA-Seq)

description:
Fluidigm C1
GEN00026921


title: d1_78 (scRNA-Seq)

description:
Fluidigm C1
GEN00026913


title: d1_82 (scRNA-Seq)

description:
Fluidigm C1
GEN00026917


title: d1_79 (scRNA-Seq)

description:
Fluidigm C1
GEN00026914


title: d1_73 (scRNA-Seq)

description:
Fluidigm C1
GEN00026908


title: d1_77 (scRNA-Seq)

description:
Fluidigm C1
GEN00026912


title: d1_84 (scRNA-Seq)

description:
Fluidigm C1
GEN00026919


title: d1_70 (scRNA-Seq)

description:
Fluidigm C1
GEN00026904


title: d1_75 (scRNA-Seq)

description:
Fluidigm C1
GEN00026910


title: d1_67 (scRNA-Seq)

description:
Fluidigm C1
GEN00026901


title: d1_89 (scRNA-Seq)

description:
Fluidigm C1
GEN00026925


title: d1_68 (scRNA-Seq)

description:
Fluidigm C1
GEN00026902


title: d1_72 (scRNA-Seq)

description:
Fluidigm C1
GEN00026906


title: d1_65 (scRNA-Seq)

description:
Fluidigm C1
GEN00026899


title: d1_74 (scRNA-Seq)

description:
Fluidigm C1
GEN00026909


title: d1_83 (scRNA-Seq)

description:
Fluidigm C1
GEN00026918


title: d1_63 (scRNA-Seq)

description:
Fluidigm C1
GEN00026897


title: d1_64 (scRNA-Seq)

description:
Fluidigm C1
GEN00026898


title: d1_58 (scRNA-Seq)

description:
Fluidigm C1
GEN00026892


title: d1_62 (scRNA-Seq)

description:
Fluidigm C1
GEN00026896


title: d1_60 (scRNA-Seq)

description:
Fluidigm C1
GEN00026894


title: d1_76 (scRNA-Seq)

description:
Fluidigm C1
GEN00026911


title: d1_54 (scRNA-Seq)

description:
Fluidigm C1
GEN00026888


title: d1_61 (scRNA-Seq)

description:
Fluidigm C1
GEN00026895


title: d1_53 (scRNA-Seq)

description:
Fluidigm C1
GEN00026887


title: d1_59 (scRNA-Seq)

description:
Fluidigm C1
GEN00026893


title: d1_56 (scRNA-Seq)

description:
Fluidigm C1
GEN00026890


title: d1_52 (scRNA-Seq)

description:
Fluidigm C1
GEN00026886


title: d1_57 (scRNA-Seq)

description:
Fluidigm C1
GEN00026891


title: d1_50 (scRNA-Seq)

description:
Fluidigm C1
GEN00026884


title: d1_48 (scRNA-Seq)

description:
Fluidigm C1
GEN00026882


title: d1_49 (scRNA-Seq)

description:
Fluidigm C1
GEN00026883


title: d1_47 (scRNA-Seq)

description:
Fluidigm C1
GEN00026881


title: d1_45 (scRNA-Seq)

description:
Fluidigm C1
GEN00026879


title: d1_44 (scRNA-Seq)

description:
Fluidigm C1
GEN00026878


title: d1_42 (scRNA-Seq)

description:
Fluidigm C1
GEN00026876


title: d1_43 (scRNA-Seq)

description:
Fluidigm C1
GEN00026877


title: d1_40 (scRNA-Seq)

description:
Fluidigm C1
GEN00026874


title: d1_46 (scRNA-Seq)

description:
Fluidigm C1
GEN00026880


title: d1_41 (scRNA-Seq)

description:
Fluidigm C1
GEN00026875


title: d1_39 (scRNA-Seq)

description:
Fluidigm C1
GEN00026873


title: d1_55 (scRNA-Seq)

description:
Fluidigm C1
GEN00026889


title: d1_31 (scRNA-Seq)

description:
Fluidigm C1
GEN00026865


title: d1_36 (scRNA-Seq)

description:
Fluidigm C1
GEN00026870


title: d1_34 (scRNA-Seq)

description:
Fluidigm C1
GEN00026868


title: d1_26 (scRNA-Seq)

description:
Fluidigm C1
GEN00026859


title: d1_32 (scRNA-Seq)

description:
Fluidigm C1
GEN00026866


title: d1_27 (scRNA-Seq)

description:
Fluidigm C1
GEN00026860


title: d1_35 (scRNA-Seq)

description:
Fluidigm C1
GEN00026869


title: d1_51 (scRNA-Seq)

description:
Fluidigm C1
GEN00026885


title: d1_25 (scRNA-Seq)

description:
Fluidigm C1
GEN00026858


title: d1_23 (scRNA-Seq)

description:
Fluidigm C1
GEN00026856


title: d1_24 (scRNA-Seq)

description:
Fluidigm C1
GEN00026857


title: d1_22 (scRNA-Seq)

description:
Fluidigm C1
GEN00026855


title: d1_19 (scRNA-Seq)

description:
Fluidigm C1
GEN00026852


title: d1_20 (scRNA-Seq)

description:
Fluidigm C1
GEN00026853


title: d1_18 (scRNA-Seq)

description:
Fluidigm C1
GEN00026851


title: d1_17 (scRNA-Seq)

description:
Fluidigm C1
GEN00026850


title: d1_15 (scRNA-Seq)

description:
Fluidigm C1
GEN00026848


title: d1_14 (scRNA-Seq)

description:
Fluidigm C1
GEN00026847


title: d1_16 (scRNA-Seq)

description:
Fluidigm C1
GEN00026849


title: d1_12 (scRNA-Seq)

description:
Fluidigm C1
GEN00026845


title: d1_37 (scRNA-Seq)

description:
Fluidigm C1
GEN00026871


title: d1_13 (scRNA-Seq)

description:
Fluidigm C1
GEN00026846


title: d1_10 (scRNA-Seq)

description:
Fluidigm C1
GEN00026843


title: d1_9 (scRNA-Seq)

description:
Fluidigm C1
GEN00026842


title: d1_33 (scRNA-Seq)

description:
Fluidigm C1
GEN00026867


title: d1_8 (scRNA-Seq)

description:
Fluidigm C1
GEN00026841


title: d1_3 (scRNA-Seq)

description:
Fluidigm C1
GEN00026835


title: d1_11 (scRNA-Seq)

description:
Fluidigm C1
GEN00026844


title: d1_6 (scRNA-Seq)

description:
Fluidigm C1
GEN00026838


title: d1_4 (scRNA-Seq)

description:
Fluidigm C1
GEN00026836


title: d1_1 (scRNA-Seq)

description:
Fluidigm C1
GEN00026833


title: d0_84 (scRNA-Seq)

description:
Fluidigm C1
GEN00026830

source_name: undifferentiated hESC

value: undifferentiated hESC


title: d0_81 (scRNA-Seq)

description:
Fluidigm C1
GEN00026827


title: d1_2 (scRNA-Seq)

description:
Fluidigm C1
GEN00026834


title: d1_7 (scRNA-Seq)

description:
Fluidigm C1
GEN00026840


title: d0_82 (scRNA-Seq)

description:
Fluidigm C1
GEN00026828


title: d1_5 (scRNA-Seq)

description:
Fluidigm C1
GEN00026837


title: d0_80 (scRNA-Seq)

description:
Fluidigm C1
GEN00026826


title: d1_21 (scRNA-Seq)

description:
Fluidigm C1
GEN00026854


title: d0_76 (scRNA-Seq)

description:
Fluidigm C1
GEN00026821


title: d0_79 (scRNA-Seq)

description:
Fluidigm C1
GEN00026825


title: d0_75 (scRNA-Seq)

description:
Fluidigm C1
GEN00026820


title: d0_77 (scRNA-Seq)

description:
Fluidigm C1
GEN00026822


title: d0_78 (scRNA-Seq)

description:
Fluidigm C1
GEN00026823


title: d0_74 (scRNA-Seq)

description:
Fluidigm C1
GEN00026819


title: d0_72 (scRNA-Seq)

description:
Fluidigm C1
GEN00026816


title: d0_70 (scRNA-Seq)

description:
Fluidigm C1
GEN00026814


title: d0_68 (scRNA-Seq)

description:
Fluidigm C1
GEN00026812


title: d0_73 (scRNA-Seq)

description:
Fluidigm C1
GEN00026818


title: d0_69 (scRNA-Seq)

description:
Fluidigm C1
GEN00026813


title: d0_71 (scRNA-Seq)

description:
Fluidigm C1
GEN00026815


title: d0_67 (scRNA-Seq)

description:
Fluidigm C1
GEN00026811


title: d0_66 (scRNA-Seq)

description:
Fluidigm C1
GEN00026810


title: d0_83 (scRNA-Seq)

description:
Fluidigm C1
GEN00026829


title: d0_64 (scRNA-Seq)

description:
Fluidigm C1
GEN00026808


title: d0_65 (scRNA-Seq)

description:
Fluidigm C1
GEN00026809


title: d0_61 (scRNA-Seq)

description:
Fluidigm C1
GEN00026805


title: d0_60 (scRNA-Seq)

description:
Fluidigm C1
GEN00026804


title: d0_63 (scRNA-Seq)

description:
Fluidigm C1
GEN00026807


title: d0_62 (scRNA-Seq)

description:
Fluidigm C1
GEN00026806


title: d0_59 (scRNA-Seq)

description:
Fluidigm C1
GEN00026803


title: d0_58 (scRNA-Seq)

description:
Fluidigm C1
GEN00026802


title: d0_56 (scRNA-Seq)

description:
Fluidigm C1
GEN00026800


title: d0_57 (scRNA-Seq)

description:
Fluidigm C1
GEN00026801


title: d0_52 (scRNA-Seq)

description:
Fluidigm C1
GEN00026796


title: d0_53 (scRNA-Seq)

description:
Fluidigm C1
GEN00026797


title: d0_55 (scRNA-Seq)

description:
Fluidigm C1
GEN00026799


title: d0_54 (scRNA-Seq)

description:
Fluidigm C1
GEN00026798


title: d0_50 (scRNA-Seq)

description:
Fluidigm C1
GEN00026793


title: d0_49 (scRNA-Seq)

description:
Fluidigm C1
GEN00026792


title: d0_51 (scRNA-Seq)

description:
Fluidigm C1
GEN00026794


title: d0_48 (scRNA-Seq)

description:
Fluidigm C1
GEN00026791


title: d0_47 (scRNA-Seq)

description:
Fluidigm C1
GEN00026790


title: d0_45 (scRNA-Seq)

description:
Fluidigm C1
GEN00026788


title: d0_46 (scRNA-Seq)

description:
Fluidigm C1
GEN00026789


title: d0_44 (scRNA-Seq)

description:
Fluidigm C1
GEN00026787


title: d0_42 (scRNA-Seq)

description:
Fluidigm C1
GEN00026785


title: d0_43 (scRNA-Seq)

description:
Fluidigm C1
GEN00026786


title: d0_40 (scRNA-Seq)

description:
Fluidigm C1
GEN00026783


title: d0_41 (scRNA-Seq)

description:
Fluidigm C1
GEN00026784


title: d0_39 (scRNA-Seq)

description:
Fluidigm C1
GEN00026782


title: d0_38 (scRNA-Seq)

description:
Fluidigm C1
GEN00026780


title: d0_36 (scRNA-Seq)

description:
Fluidigm C1
GEN00026778


title: d0_32 (scRNA-Seq)

description:
Fluidigm C1
GEN00026774


title: d0_35 (scRNA-Seq)

description:
Fluidigm C1
GEN00026777


title: d0_30 (scRNA-Seq)

description:
Fluidigm C1
GEN00026771


title: d0_31 (scRNA-Seq)

description:
Fluidigm C1
GEN00026773


title: d2_54 (scRNA-Seq)

description:
Fluidigm C1
GEN00028255


title: d0_33 (scRNA-Seq)

description:
Fluidigm C1
GEN00026775


title: d0_34 (scRNA-Seq)

description:
Fluidigm C1
GEN00026776


title: d0_29 (scRNA-Seq)

description:
Fluidigm C1
GEN00026770


title: d0_28 (scRNA-Seq)

description:
Fluidigm C1
GEN00026769


title: d0_26 (scRNA-Seq)

description:
Fluidigm C1
GEN00026767


title: d4_52 (scRNA-Seq)

description:
Fluidigm C1
GEN00028361


title: d0_27 (scRNA-Seq)

description:
Fluidigm C1
GEN00026768


title: d0_25 (scRNA-Seq)

description:
Fluidigm C1
GEN00026766


title: PSC d14 2

value: 14 day differentiation


title: d0_22 (scRNA-Seq)

description:
Fluidigm C1
GEN00026763


title: d0_21 (scRNA-Seq)

description:
Fluidigm C1
GEN00026762


title: d0_20 (scRNA-Seq)

description:
Fluidigm C1
GEN00026761


title: d0_17 (scRNA-Seq)

description:
Fluidigm C1
GEN00026757


title: d0_19 (scRNA-Seq)

description:
Fluidigm C1
GEN00026759


title: d0_15 (scRNA-Seq)

description:
Fluidigm C1
GEN00026755


title: d0_18 (scRNA-Seq)

description:
Fluidigm C1
GEN00026758


title: d0_37 (scRNA-Seq)

description:
Fluidigm C1
GEN00026779


title: d0_16 (scRNA-Seq)

description:
Fluidigm C1
GEN00026756


title: d0_13 (scRNA-Seq)

description:
Fluidigm C1
GEN00026753


title: d0_12 (scRNA-Seq)

description:
Fluidigm C1
GEN00026752


title: d0_11 (scRNA-Seq)

description:
Fluidigm C1
GEN00026750


title: d0_10 (scRNA-Seq)

description:
Fluidigm C1
GEN00026749


title: d0_9 (scRNA-Seq)

description:
Fluidigm C1
GEN00026748


title: d0_7 (scRNA-Seq)

description:
Fluidigm C1
GEN00026745


title: d0_8 (scRNA-Seq)

description:
Fluidigm C1
GEN00026746


title: d0_14 (scRNA-Seq)

description:
Fluidigm C1
GEN00026754


title: d0_23 (scRNA-Seq)

description:
Fluidigm C1
GEN00026764


title: d0_3 (scRNA-Seq)

description:
Fluidigm C1
GEN00026739


title: d0_6 (scRNA-Seq)

description:
Fluidigm C1
GEN00026742


title: d0_5 (scRNA-Seq)

description:
Fluidigm C1
GEN00026741


title: d0_2 (scRNA-Seq)

description:
Fluidigm C1
GEN00026738


title: d0_24 (scRNA-Seq)

description:
Fluidigm C1
GEN00026765