title: Uterus - 362570

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 60
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1C
Pathological Grade: 2
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Uterus - 362588

status: Public on Jun 25 2007

type: RNA

city: Phoenix

first: Erin

last: Curley

state: AZ

address: 445 N. 5th Street

country: USA

institute: IGC

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Pathological T: 3a
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Other
Pathological Stage: 4B
Pathological Grade: 4
Primary Site: Endometrium
Histology: Malignant mixed Mullerian tumor

molecule: total RNA

organism: Homo sapiens

source_name: Uterus


title: Prostate - 371433

description:
Quality metric = 28S to 18S: 1.9
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigars
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
PSA: Elevated
Cancer discovered by digital exam?: No
Current status of disease: Under Therapy
Pathological T: 3b
Pathological N: 0
Pathological M: 0
Pathological Stage: 3
Pathological Grade: 3
Pathological Gleason Score: 8-10
Primary Site: Prostate
Histology: Adenocarcinoma, Acinar Type

source_name: Prostate


title: Kidney - 351887

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma

source_name: Kidney


title: Uterus - 351885

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 37
Pathological T: 2b
Pathological N: 1
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Thyroid - 362572

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 30-40
Gender: Female
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Clinical T: 1
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Primary Site: Thyroid
Histology: Papillary carcinoma

source_name: Thyroid


title: Ovary - 348066

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 6
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Vaginal bleeding
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1A
Clinical Grade: 1
Primary Site: Ovary
Histology: Mucinous Adenocarinoma

source_name: Ovary


title: Prostate - 348063

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 9
PSA: Elevated
# of years PSA Tested?: 6-10
Cancer discovered by digital exam?: No
Current status of disease: Under Therapy
Pathological T: 3a
Pathological N: 0
Pathological M: 0
Pathological Stage: 3
Pathological Grade: 3
Pathological Gleason Score: 8-10
Primary Site: Prostate
Histology: Adenocarcinoma, Acinar Type


title: Colon - 346004

description:
Quality metric = 28S to 18S: 2.0
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Black tarry stools
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Mucinous Carcinoma

source_name: Colon


title: Colon - 348062

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 33
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 2
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Colon
Histology: Adenocarcinoma arising in a villous adenoma


title: Pelvic Tissue - 348055

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Surgical
Clinical Question: T
Clinical Value: x
Clinical Question: N
Clinical Value: 0
Clinical Question: M
Clinical Value: 0
Clinical Question: Stage
Clinical Value: Unknown
Clinical Question: Grade
Clinical Value: 3
Primary Site: Endometrium
Clinical Question: Histology
Clinical Value: Metastatic Malignant Mixed Mullerian Tumor

source_name: Pelvic Tissue


title: Pancreas - 348060

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 20
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Primary Site: Exocrine Pancreas
Histology: Ductal adenocarcinoma

source_name: Pancreas


title: Urinary bladder - 341550

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 51-55
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Pathological T: 2a
Pathological N: 0
Pathological M: 0
Pathological Stage: 2
Pathological Grade: 3
Primary Site: Urinary Bladder
Histology: Papillary transitional cell carcinoma

source_name: Urinary bladder


title: Mesenteric Lymph Node - 344203

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Have you ever had mononucleousis?: No
Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No
Clinical Stage: 3
Clinical Symptoms: A
Primary Site: Lymph Nodes (Nodal Lymphoma)
Histology: Follicular lymphoma

source_name: Mesenteric Lymph Node


title: Cerebellar  tissue - 348059

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Pathological T: X
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Brain
Pathological Stage: 4
Pathological Grade: X
Pathological Stage During or Following Multimodality Therapy: Yes
Primary Site: Lung
Histology: Metastatic Non-small cell carcinoma

source_name: Cerebellar  tissue


title: Prostate - 341552

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 100
PSA: Elevated
# of years PSA Tested?: 0-5
Cancer discovered by digital exam?: Yes
Pathological T: 2c
Pathological N: 0
Pathological M: 0
Pathological Stage: 2
Pathological Grade: 2
Pathological Gleason Score: 5-6
Primary Site: Prostate
Histology: Adenocarcinoma, NOS


title: Kidney - 345997

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 51-55
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 87
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Clinical Multiple Tumors: Yes
Primary Site: Kidney
Histology: Papillary renal cell carcinoma


title: Uterus - 348061

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 50
Pathological T: 3a
Pathological N: 1
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Endometrium
Histology: Mixed endometrioid and serous adenocarcinoma


title: Uterus - 348057

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Pathological T: 1b
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 2
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Liver - 345983

description:
Quality metric = 28S to 18S: 1.9
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 34
Pathological Question: T
Pathological Value: 1
Pathological Question: N
Pathological Value: 1
Pathological Question: M
Pathological Value: 0
Pathological Question: Stage
Pathological Value: 3C
Pathological Question: Grade
Pathological Value: 2
Primary Site: Liver
Pathological Question: Histology
Pathological Value: Hepatocellular Carcinoma

source_name: Liver


title: Cervix Uteri - 341554

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Have you ever been diagnosed as having HPV on your PAP smear?: No
Pathological T: 1b1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B1
Pathological Grade: 3
Primary Site: Cervix Uteri
Histology: Squamous cell carcinoma, non-keratinizing

source_name: Cervix Uteri


title: Retroperitoneum - 344193

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 10
Pathological T: 2b
Pathological N: 0
Pathological M: 0
Pathological Stage: 3
Pathological Grade: 3
Primary Site: Retroperitoneum
Histology: Dedifferentiated liposarcoma

source_name: Retroperitoneum


title: Colon - 341555

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 12
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Vomiting
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Colon
Histology: Adenocarcinoma


title: Kidney - 348064

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 23
Clinical T: 3b
Clinical N: 0
Clinical M: 0
Clinical Stage: 3
Clinical Grade: 4
Primary Site: Kidney
Histology: Chromophobe renal carcinoma


title: Liver - 345987

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Clinical Question: T
Clinical Value: 3
Clinical Question: N
Clinical Value: 0
Clinical Question: M
Clinical Value: 0
Clinical Question: Stage
Clinical Value: 3A
Clinical Question: Grade
Clinical Value: 3
Primary Site: Liver
Clinical Question: Histology
Clinical Value: Hepatocellular Carcinoma


title: Pelvic mass - 341551

description:
Quality metric = 28S to 18S: 1.9
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Presenting Symptoms: Abdominal pain
Clinical T: 3b
Clinical N: 0
Clinical M: 0
Clinical Stage: 3B
Clinical Grade: 2
Primary Site: Ovary
Histology: Metastatic Papillary Serous Adenocarcinoma

source_name: Pelvic mass


title: Breast - 348058

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 30-40
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 60
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 2a
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 2
Pathological Multiple Tumors: Yes
Pathological ER: Positive
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma

source_name: Breast


title: Breast - 345988

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 0-5
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological Multiple Tumors: Yes
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 341556

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 50-60
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: 1
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Ovary
Histology: Papillary Serous Adenocarcinoma


title: Cervix Uteri - 341549

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 30-40
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Clinical T: 2b
Clinical N: 0
Clinical M: 0
Clinical Stage: 2B
Clinical Grade: X
Primary Site: Cervix Uteri
Histology: Mucinous adenocarcinoma


title: Bladder - 345992

description:
Quality metric = 28S to 18S: 1.9
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 48
Pathological T: 4
Pathological N: 0
Pathological M: 0
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Prostate
Histology: Small Cell Carcinoma

source_name: Bladder


title: Kidney - 341553

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Kidney - 344195

description:
Quality metric = 28S to 18S: 2.0
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 60
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 3
Primary Site: Kidney
Histology: Papillary renal cell carcinoma


title: Pectoral Muscle - 346005

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Hormonal Treatment
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Mammogram: Yes
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: Yes
Retreatment T: 2
Retreatment N: 1a
Retreatment M: 0
Retreatment Stage: 2B
Retreatment Grade: 3
Retreatment ER: Negative
Retreatment PR: Negative
Retreatment HER/2 Neu: Negative
Primary Site: Breast
Histology: Metastatic Ductal Carcinoma

source_name: Pectoral Muscle


title: Sigmoid colon - 341558

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Abdominal Pain
Diagnosis made by: Colonoscopy
Pathological Question: Stage
Pathological Value: No AJCC scheme for unknown primary
Primary Site: Unknown
Pathological Question: Histology
Pathological Value: Metastatic Adenocarcinoma

source_name: Sigmoid colon


title: Kidney - 344186

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 4
Clinical T: 3b
Clinical N: 0
Clinical M: 0
Clinical Stage: 3
Clinical Grade: 3
Primary Site: Kidney
Histology: Papillary renal cell carcinoma

source_name: Kidney


title: Uterus - 341546

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1C
Pathological Grade: 3
Primary Site: Endometrium
Histology: Endometrioid carcinoma

source_name: Uterus


title: Omentum - 341544

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Pathological T: 3c
Pathological N: X
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Ovary
Histology: Metastatic Papillary Serous Adenocarcinoma

source_name: Omentum


title: Colon - 341541

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 30-40
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma

source_name: Colon


title: Prostate - 317475

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Asian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 200
Presenting Symptoms: Nocturia
PSA: Elevated
# of years PSA Tested?: 0-5
Cancer discovered by digital exam?: No
Current status of disease: Under Therapy
Clinical T: 2c
Clinical N: 0
Clinical M: 0
Clinical Stage: 2
Clinical Grade: 2
Clinical Gleason Score: 5-6
Primary Site: Prostate
Histology: Adenocarcinoma, NOS

source_name: Prostate


title: Uterus - 311866

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 77
Pathological T: 3a
Pathological N: 1
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Endometrium
Histology: Papillary Serous Carcinoma


title: Kidney - 341513

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 29
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Colon - 341526

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 51-55
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 4
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: is
Pathological N: 0
Pathological M: 0
Pathological Stage: 0
Pathological Grade: 1
Primary Site: Colon
Histology: Carcinoma in situ arising in a villous adenoma


title: Kidney - 341517

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Colon - 341507

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Pathological T: 3
Pathological N: 2
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Colon
Histology: Adenocarcinoma


title: Urinary Bladder - 311858

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 13
Prior Therapy: Surgical
Pathological T: 2b
Pathological N: 2
Pathological M: 0
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Urinary Bladder
Histology: Urothelial (transitional cell) carcinoma

source_name: Urinary Bladder


title: Colon - 317481

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Presenting Symptoms: Abdominal Pain
Diagnosis made by: Colonoscopy
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Dukes Stage: A
Primary Site: Colon
Histology: Adenocarcinoma arising in a villous adenoma


title: Uterus - 341522

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 49
Pathological T: 2b
Pathological N: 1
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Endometrium
Histology: Adenosquamous carcinoma


title: Pelvic Mass - 311872

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 23
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Clinical T: 2b
Clinical N: 0
Clinical M: 0
Clinical Stage: 2B
Clinical Grade: 3
Primary Site: Ovary
Histology: Metastatic Endometrioid adenocarcinoma

source_name: Pelvic Mass


title: Ovary - 311870

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 47
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: 1
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Ovary
Histology: Adenocarcinoma with mixed subtypes

source_name: Ovary


title: Prostate - 310525

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 60
PSA: Elevated
# of years PSA Tested?: 16-20
Cancer discovered by digital exam?: No
Current status of disease: Under Therapy
Clinical T: 3a
Clinical N: 0
Clinical M: 0
Clinical Stage: 3
Clinical Grade: 3
Clinical Gleason Score: 7
Primary Site: Prostate
Histology: Adenocarcinoma, NOS


title: Ovary - 310520

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 10
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: 3b
Pathological N: 0
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Primary Site: Ovary
Histology: Papillary Serous Adenocarcinoma


title: Soft Tissue Thigh - 311878

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 210
Prior Therapy: Radiation
Clinical T: 2b
Clinical N: 0
Clinical M: 0
Clinical Stage: 3
Clinical Grade: 4
Clinical Staged During or Following Multimodality Therapy: Yes
Primary Site: Soft Tissue Thigh
Histology: Pleomorphic sarcoma

source_name: Soft Tissue Thigh


title: Soft tissue of arm - 311876

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Male
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Pathological T: 2b
Pathological N: 0
Pathological M: 0
Pathological Stage: 3
Pathological Grade: 4
Primary Site: Soft tissue of arm
Histology: Pleomorphic sarcoma

source_name: Soft tissue of arm


title: Colon - 310513

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Screening studies performed?: Yes
Diagnosis made by: Sigmoidoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Colon - 341516

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Bright red stools
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 2
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 1
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Lung - 341530

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 56-60
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Pipe
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 90
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1A
Pathological Grade: 2
Primary Site: Lung
Histology: Squamous cell carcinoma

source_name: Lung


title: Prostate - 311859

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Presenting Symptoms: Dribbling
Presenting Symptoms: Urgency
PSA: Elevated
# of years PSA Tested?: 6-10
Pathological T: 3b
Pathological N: 1
Pathological M: X
Pathological Stage: 4
Pathological Grade: 3
Pathological Gleason Score: 7
Primary Site: Prostate
Histology: Adenocarcinoma, NOS


title: Breast - 341510

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 56-60
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 55
Mammogram: Yes
Oophorectomy?: No
Pathological T: 3
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Pathological Multiple Tumors: Yes
Pathological ER: Positive
Pathological PR: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 310526

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 9
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Prostate - 310517

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 42
PSA: Elevated
# of years PSA Tested?: 0-5
Cancer discovered by digital exam?: Yes
Current status of disease: Under Therapy
Pathological T: 2c
Pathological N: 0
Pathological M: 0
Pathological Stage: 2
Pathological Grade: 3
Pathological Gleason Score: 7
Primary Site: Prostate
Histology: Adenocarcinoma, NOS


title: Breast - 310519

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 153
Prior Therapy: Chemotherapy
Mammogram: Yes
Pathological T: 1b
Pathological N: 2a
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 2
Pathological Stage During or Following Multimodality Therapy: Yes
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Liver - 310511

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Retreatment T: X
Retreatment N: X
Retreatment M: 1
Retreatment Metastatic Sites: Hepatic
Retreatment Stage: 4
Retreatment Grade: X
Primary Site: Colon
Histology: Metastatic Adenocarcinoma

source_name: Liver


title: Kidney - 310521

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 120
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Tubulo-papillary renal cell carcinoma


title: Ovary - 341508

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 30-40
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 28
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Clinical T: 2b
Clinical N: 0
Clinical M: 0
Clinical Stage: 2B
Primary Site: Ovary
Histology: Papillary serous tumor of low malignant potential


title: Uterus - 311854

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Pathological T: 1b
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 2
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Kidney - 311869

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 13
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Ovary - 310516

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 56-60
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 45
Presenting Symptoms: Vaginal bleeding
Pathological T: 2a
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Primary Site: Ovary
Histology: Papillary serous cystadenocarcinoma


title: Colon - 309417

description:
Quality metric = 28S to 18S: 1.0
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 13
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma


title: Colon - 308699

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 54
Screening studies performed?: No
Pathological T: 3
Pathological N: 1
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Colon
Histology: Adenocarcinoma


title: Kidney - 309406

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 20
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Papillary renal cell carcinoma


title: Breast - 309418

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: Yes
Fibrocystic disease?: Yes
Mammogram calcifications?: Yes
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological ER: Negative
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Lobular Carcinoma


title: Thyroid - 309411

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 60
Clinical T: 3
Clinical N: 0
Clinical M: 0
Clinical Stage: 3
Primary Site: Thyroid
Histology: Medullary carcinoma, NOS

source_name: Thyroid


title: Colon - 309419

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 30-40
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 25
Presenting Symptoms: Bright red stools
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 1
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 3
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Kidney - 309410

description:
Quality metric = 28S to 18S: 1.4
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Clinical T: 3a
Clinical N: 0
Clinical M: 0
Clinical Stage: 3
Clinical Grade: 3
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Uterus - 298074

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 20
Pathological T: 1c
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 3
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Lung - 309414

description:
Quality metric = 28S to 18S: 2.2
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Presenting Symptoms: Persistent Cough
Presenting Symptoms: SOB
Workplace or household smokers?: Yes
Pathological T: 2
Pathological N: 1
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Kidney - 309394

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 24
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Kidney - 309391

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Male
Ethnic Background: Hispanic
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Axillary lymph node - 309395

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Mammogram: Yes
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Metastatic Ductal Carcinoma

source_name: Axillary lymph node


title: Breast - 308707

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 60
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Primary Site: Breast
Histology: Mucinous Carcinoma

source_name: Breast


title: Breast - 309393

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 19
Mammogram: Yes
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 1
Pathological Multiple Tumors: Yes
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Thyroid - 290726

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Clinical T: 1
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Primary Site: Thyroid
Histology: Papillary carcinoma, follicular variant


title: Colon - 308695

description:
Quality metric = 28S to 18S: 1.9
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 15
Presenting Symptoms: Bright red stools
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Dukes Stage: A
Primary Site: Colon
Histology: Adenocarcinoma arising in a villous adenoma


title: Colon - 290734

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Constipation
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Jejunum - 290725

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 30-40
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Immunotherapy
Prior Therapy: Radiation
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 6-10
Retreatment T: X
Retreatment N: 0
Retreatment M: 1c
Retreatment Metastatic Sites: Pulmonary
Retreatment Stage: 4
Primary Site: Melanoma of Skin
Histology: Metastatic Malignant melanoma, NOS

source_name: Jejunum


title: Ileum - 290715

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 42
Pathological Question: Stage
Pathological Value: No AJCC scheme for this site and histology
Pathological Question: Metastatic Sites
Pathological Value: Hepatic
Primary Site: Ileum
Pathological Question: Histology
Pathological Value: Carcinoid tumor

source_name: Ileum


title: Uterus - 286673

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 32
Pathological T: 3a
Pathological N: 1
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 3
Primary Site: Endometrium
Histology: Serous adenocarcinoma (papillary serous)


title: Ovary - 308691

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Pathological T: 3a
Pathological N: 0
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 2
Primary Site: Endometrium
Histology: Metastatic Endometrioid carcinoma


title: Colon - 309390

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 19
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Rectosigmoid
Histology: Adenocarcinoma


title: Colon - 267095

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 2
Presenting Symptoms: Bright red stools
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 3
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Liver - 276695

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Retreatment Question: T
Retreatment Value: 3
Retreatment Question: N
Retreatment Value: x
Retreatment Question: M
Retreatment Value: 1
Retreatment Question: Metastatic Sites
Retreatment Value: Bone
Retreatment Question: Stage
Retreatment Value: 4
Retreatment Question: Grade
Retreatment Value: X
Primary Site: Liver
Retreatment Question: Histology
Retreatment Value: Hepatocellular Carcinoma


title: Soft Tissue of Neck - 308701

description:
Quality metric = 28S to 18S: 2.1
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 10
Clinical Question: Stage
Clinical Value: No AJCC staging for unknown primary
Primary Site: Unknown
Clinical Question: Histology
Clinical Value: Metastatic Keratinizing Squamous Cell Carcinoma

source_name: Soft Tissue of Neck


title: Prostate - 284060

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Type of Tobacco Use: Cigars
Alcohol Consumption?: Yes
Family History of Cancer?: No
PSA: Elevated
Cancer discovered by digital exam?: No
Current status of disease: Under Therapy
Clinical T: 2a
Clinical N: 0
Clinical M: 0
Clinical Stage: 2
Clinical Grade: 2
Clinical Gleason Score: 5-6
Primary Site: Prostate
Histology: Adenocarcinoma, NOS


title: Adrenal Gland - 284061

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Clinical Question: Stage
Clinical Value: No AJCC Scheme for this site and histology
Primary Site: Adrenal Gland
Clinical Question: Histology
Clinical Value: Pheochromocytoma

source_name: Adrenal Gland


title: Pancreas - 276642

description:
Quality metric = 28S to 18S: 1.0
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 17
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Primary Site: Exocrine Pancreas
Histology: Adenocarcinoma, NOS

source_name: Pancreas


title: Kidney - 286672

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma

source_name: Kidney


title: Rectum - 254405

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 120
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Stage During or Following Multimodality Therapy: Yes
Primary Site: Rectum
Histology: Adenocarcinoma

source_name: Rectum


title: Kidney - 228541

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 36
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Colon - 211386

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 11
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Constipation
Screening studies performed?: No
Pathological T: 3
Pathological N: 2
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Mucinous Carcinoma

source_name: Colon


title: Breast - 254402

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 200
Prior Therapy: Chemotherapy
Mammogram: No
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Pathological T: 4d
Pathological N: 2
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 3
Pathological Multiple Tumors: Yes
Pathological Stage During or Following Multimodality Therapy: Yes
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Inflammatory Carcinoma


title: Uterus - 262820

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1B
Clinical Grade: 2
Primary Site: Endometrium
Histology: Endometrioid carcinoma

source_name: Uterus


title: Colon - 254400

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma


title: Colon - 262826

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Presenting Symptoms: Diarrhea
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Dukes Stage: A
Primary Site: Colon
Histology: Adenocarcinoma arising in a villous adenoma


title: Kidney - 262818

description:
Quality metric = 28S to 18S: 1.9
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Retreatment T: 1b
Retreatment N: 0
Retreatment M: 0
Retreatment Stage: 1
Retreatment Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Uterus - 254389

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1C
Pathological Grade: 2
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Liver - 234323

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 34
Clinical Question: T
Clinical Value: 3
Clinical Question: N
Clinical Value: 0
Clinical Question: M
Clinical Value: 0
Clinical Question: Stage
Clinical Value: 3A
Clinical Question: Grade
Clinical Value: 3
Clinical Question: Multiple Tumors
Clinical Value: Yes
Primary Site: Liver
Clinical Question: Histology
Clinical Value: Cholangiocarcinoma


title: Hemidiaphragm - 211385

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Male
Ethnic Background: Asian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Retreatment T: 2b
Retreatment N: 0
Retreatment M: 0
Retreatment Stage: 3
Retreatment Grade: 3
Primary Site: Retroperitoneum
Histology: Metastatic Dedifferentiated liposarcoma

source_name: Hemidiaphragm


title: Uterus - 234318

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 90-100
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 21
Pathological T: 1a
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: X
Pathological Multiple Tumors: Yes
Primary Site: Endometrium
Histology: Malignant mixed Mullerian tumor


title: Kidney - 254397

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 30-40
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 60
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional(clear cell) renal carcinoma


title: Stomach - 254399

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Male
Ethnic Background: Asian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 4
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 3
Primary Site: Stomach
Histology: Adenocarcinoma

source_name: Stomach


title: Colon - 228547

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 80-90
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Type of Tobacco Use: Pipe
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Presenting Symptoms: Abdominal Pain
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Colon
Histology: Adenocarcinoma


title: Brain - 254394

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Pathological T: X
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Brain
Pathological Stage: 4
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: Yes
Primary Site: Lung
Histology: Metastatic Non-small cell carcinoma

source_name: Brain


title: Kidney - 254401

description:
Quality metric = 28S to 18S: 1.9
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Chromophobe renal carcinoma


title: Uterus - 211382

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Pathological T: 2a
Pathological N: 1
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 2
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Kidney - 228543

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 61-65
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 37
Clinical T: 1
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 3
Primary Site: Renal Pelvis
Histology: Urothelial (transitional cell) carcinoma


title: Breast - 207531

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 20-30
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 60
Mammogram: No
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Colon - 205706

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 30-40
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 2
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Omentum - 211387

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Female
Ethnic Background: Asian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 11
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological Question: Grade
Pathological Value: 3
Pathological Question: T
Pathological Value: 3c
Pathological Question: N
Pathological Value: X
Pathological Question: M
Pathological Value: X
Pathological Question: Stage
Pathological Value: Unknown
Primary Site: Peritoneum
Pathological Question: Histology
Pathological Value: Metastatic Serous surface papillary carcinoma

source_name: Omentum


title: Uterus - 211376

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 25
Pathological T: 1b
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 1
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Breast - 231860

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Pathological T: 2
Pathological N: 3a
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 2
Pathological Multiple Tumors: Yes
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 235700

description:
Quality metric = 28S to 18S: 1.0
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Clinical T: 2
Clinical N: 0
Clinical M: 1
Clinical Metastatic Sites: Osseous
Clinical Stage: 4
Clinical Grade: 4
Primary Site: Kidney
Histology: Chromophobe renal carcinoma


title: Neck mass - 211374

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 11
Clinical T: 1
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Primary Site: Thyroid
Histology: Papillary carcinoma

source_name: Neck mass


title: Rectum - 207530

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 150
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Diagnosis made by: Colonoscopy
Clinical T: 3
Clinical N: 0
Clinical M: 0
Clinical Stage: 2A
Clinical Grade: 3
Clinical Dukes Stage: B
Primary Site: Rectum
Histology: Adenocarcinoma


title: Ovary - 234328

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 20-30
Gender: Female
Ethnic Background: Asian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 19
Pathological T: 3b
Pathological N: 0
Pathological M: 0
Pathological Stage: 3B
Primary Site: Ovary
Histology: Papillary serous tumor of low malignant potential

source_name: Ovary


title: Uterus - 205709

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 58
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1C
Pathological Grade: 3
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Pancreas - 309421

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 10
Pathological T: 4
Pathological N: 1
Pathological M: 0
Pathological Stage: 3
Pathological Grade: 2
Primary Site: Exocrine Pancreas
Histology: Ductal adenocarcinoma


title: Ovary - 187243

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: X
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Ovary
Histology: Papillary Serous Carcinoma


title: Colon - 199395

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigars
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 21
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 1
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 3
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Breast - 193025

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 0-5
Pathological T: 2
Pathological N: 1a
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 2
Primary Site: Breast
Histology: Ductal Carcinoma


title: Lung - 205700

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 90
Workplace or household smokers?: Yes
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1A
Pathological Grade: 2
Primary Site: Lung
Histology: Adenocarcinoma, NOS

source_name: Lung


title: Lung - 205690

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Chewing Tobacco
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 90
Presenting Symptoms: SOB
Workplace or household smokers?: Yes
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 2
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Ovary - 187246

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: 3b
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Pleura
Pathological Stage: 4
Pathological Grade: 3
Pathological Stage During or Following Multimodality Therapy: Yes
Primary Site: Ovary
Histology: Papillary Serous Carcinoma


title: Kidney - 205701

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 42
Clinical T: 1
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Renal Pelvis
Histology: Papillary transitional cell carcinoma


title: Colon - 205691

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma


title: Kidney - 181037

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 30-40
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Clinical Multiple Tumors: No
Clinical Stage During or Following Multimodality Therapy: No
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Small bowel - 170807

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 6-10
Presenting Symptoms: Vaginal bleeding
Retreatment T: 3c
Retreatment N: 0
Retreatment M: X
Retreatment Stage: 3C
Retreatment Grade: X
Primary Site: Ovary
Histology: Metastatic Papillary Serous Carcinoma

source_name: Small bowel


title: Ovary - 187251

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 45
Presenting Symptoms: Abdominal pain
Pathological T: 1b
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Primary Site: Ovary
Histology: Mucinous cystic tumor of low malignant potential


title: Colon - 89120

description:
Quality metric = 28S to 18S: 1.9
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 24
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Dukes Stage: A
Primary Site: Colon
Histology: Adenocarcinoma


title: Meis_3

city: Edinburgh

first: GUDMAP

last: Developers

address: Crewe Road

country: United Kingdom

institute: IGMM MRC Human Genetics Unit

description:
>> Amplification protocol <<
Target Amplified manufacturer/kit: TargetAmp 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://gudmap.hgu.mrc.ac.uk/gudmap/pages/mic_submission.html?id=GUDMAP:8102

hyb_protocol: Affymetrix standard protocol Amount labeled  target hybridization to array: 5ug

scan_protocol: Affymetrix standard protocol

data_processing: Analysis method: Affymetrix GCOS and Gene Spring and Avadis programs GCOS Tgt value: 1500

label: Biotin

organism: Mus musculus

source_name: nephrogenic interstitium

extract_protocol: Potter protocol: 'RNA purification'

treatment_protocol:
pool size: approx 20 E15.5 kidneys
Pooled sample: Yes
Dissection Method: Fluorescent Activated Cell Sorting (FACS)
Meis transgenic mice are time-mated.  Pregnant Meis transgenic mice are euthanized by standard carbon dioxide asphyxiation.  All fetuses are killed by decapitation with a scalpel. Fetal kidneys are dissected from fetuses and placed in ice-cold PBS. Embryonic kidneys are incubated in the presence of 300µl of trypsin for 5 minutes at 37 ºC. Kidneys are then dissociated by titurating in the presence of 600µl of ice-cold 10%FBS/PBS. The dissociated cells from the kidneys are pelleted at 5000 rpm, 4 ºC for 5 minutes. The media is aspirated and the cell pellet is resuspended in 200µl of ice-cold 2%FBS/PBS. Filter cells through 70 micron mesh filter and the GFP positive cells are further isolated using FACS.

tag: gene reported

value: Tg(Meis1-EGFP)FO156Gsat / MGI:3843887

tag: strain

tag: sex

value: Unknown

tag: developmental stage

tag: theiler stage

tag: somite count

tag: developmental landmark


title: Ovary - 101109

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: X
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 2
Primary Site: Ovary
Histology: Papillary Serous Carcinoma


title: Breast - 84137

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 11-15
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 1mi
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Pathological Multiple Tumors: Yes
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma

source_name: Breast


title: Cervix Uteri - 1046

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Have you ever been diagnosed as having HPV on your PAP smear?: No
Pathological T: 1b2
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 3
Primary Site: Cervix Uteri
Histology: Adenocarcinoma

source_name: Cervix Uteri


title: Breast - 151616

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 21
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: is
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 0
Pathological Grade: X
Primary Site: Breast
Histology: Lobular carcinoma in-situ


title: Omentum - 187245

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological Question: Grade
Pathological Value: 3
Pathological Question: T
Pathological Value: 3C
Pathological Question: N
Pathological Value: x
Pathological Question: M
Pathological Value: 0
Pathological Question: Stage
Pathological Value: 3C
Primary Site: Peritoneum
Pathological Question: Histology
Pathological Value: Metastatic Serous surface papillary carcinoma


title: Meis_2

description:
>> Amplification protocol <<
Target Amplified manufacturer/kit: TargetAmp 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://gudmap.hgu.mrc.ac.uk/gudmap/pages/mic_submission.html?id=GUDMAP:8101


title: Uterus - 170819

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1C
Pathological Grade: 1
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Spleen - 181032

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 90
Clinical Stage: 4
Clinical Symptoms: A
Primary Site: Spleen
Histology: Splenic marginal zone B-cell lymphoma

source_name: Spleen


title: NPC_wt_rep2

city: Cambridge

first: Tarjei

middle: S

last: Mikkelsen

state: MA

address: 7 Cambridge Center

institute: Broad Institute

description: Standard Affymetrix protocols for Mouse Genome 430 2.0 Array

data_processing: GCOS version 1.4, default parameters

label: biotin

source_name: Murine neural precursor cells

extract_protocol: Trizol according to the manufacturer's recommendations

treatment_protocol: ES cells were differentiated into neural precursor cells (NPCs) through embryoid body formation for 4 days and selection in ITSFn media for 5–7 days, and maintained in FGF2 and EGF2 (R&D Systems) as described8. The cells uniformly express nestin and Sox2 and can differentiate into neurons, astrocytes and oligodendrocytes

tag: Genotype 129SvJae x C57BL/6; male


title: Uterus - 161532

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 21
Pathological T: 1b
Pathological N: 1
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 2
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: NPC_wt_rep3

hyb_protocol: Standard Affymetrix protocols for Mouse Genome 430 2.0 Array


title: Uterus - 154210

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Vaginal bleeding
Pathological T: 1b
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 3
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Meis_1

description:
>> Amplification protocol <<
Target Amplified manufacturer/kit: TargetAmp 2-Round Aminoallyl-aRNA Amplification Kit 1.0 (EPICENTRE Biotechnologies)
Target Amplified protocol: Potter protocols
Rounds of amplification: 2
URL: http://gudmap.hgu.mrc.ac.uk/gudmap/pages/mic_submission.html?id=GUDMAP:8100


title: Breast - 5238

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Mammogram: No
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 1b
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Intracystic carcinoma


title: NPC_wt_rep1

scan_protocol: Standard Affymetrix protocols for Mouse Genome 430 2.0 Array


title: Colon - 143651

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 8
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 4
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Primary Site: Colon
Histology: Mucinous Carcinoma


title: Col_dark_late_rep3

status: Public on Jun 24 2007

city: Davis

first: Julin

middle: N

last: Maloof

state: CA

address: One Shields Ave

department: Plant Biology

institute: University of California, Davis

description: Seedlings were entrained in short days for four days and then transferred to cycles of 160 min light and 320 min dark for three days. This sample was collected two hours after lights off, 1240 minutes after dawn on the seventh day.

hyb_protocol: Hybridization was performed in a Affymetrix 640 Hybridization Oven using standard Affymetrix protocols

scan_protocol: Scans were performed on a Affymetrix GeneChip 3000 scanner.

data_processing: Data was normalized using the RMA protocol.

organism: Arabidopsis thaliana

source_name: Columbia 7 day old seedling, 120 minutes after transfer to darkness, night time

label_protocol: From 5 µg of total RNA, cRNA was made and labeled with biotin (Affymetrix, CA) according to protocol described by Schmid, M. et al. Nat. Genet. 37, 501-506 (2005).

growth_protocol: About 100 seedlings were grown on a filter paper laid on 1xMSMO, 3% sucrose, 0.9% agar (Cat # A1296, Sigma) in 6 cm round Petri dishes. Seeds were stratified for four days at 4 ˚C and then incubated for four days at 20˚C under short day (8 hours light: 16 hours dark) conditions. The Petri dishes were tilted about 30˚ from vertical in a growth chamber equipped with red and blue LEDs (70.7 µE red light and 15.3 µE blue light). Starting from subjective dawn at day five, cycles of 160 min light and 320 min dark were given for three days. This sample was collected 1240 minutes after subjective dawn on the seventh day; 120 minutes after lights-off.

extract_protocol: Samples were transferred to 1.5 ml tube and immediately frozen by liquid nitrogen and stored at –80˚C. Samples were collected using infra-red (IR) goggles (Night Vision model NCB4, Night Owl Optics, NY) to avoid light exposure. 100 mg frozen tissue samples were ground by pestle and electric motor. Total RNA was extracted using RNeasy Plant Mini kit (Qiagen, CA).

tag: Strain

value: Columbia

tag: Age

value: 7 Days

tag: Tissue

value: Whole Seedling


title: CCA1-34_dark_early_rep1

description: Seedlings were entrained in short days for four days and then transferred to cycles of 160 min light and 320 min dark for three days. This sample was collected two hours after lights off, 280 minutes after dawn on the fifth day.

hyb_protocol: Hybridization was performed in a Affymetrix 640 Hybridization Oven using standard Affymetrix protocols.

source_name: CCA1-34 5 day old seedling, 120 minutes after transfer to darkness, morning

growth_protocol: About 100 seedlings were grown on a filter paper laid on 1xMSMO, 3% sucrose, 0.9% agar (Cat # A1296, Sigma) in 6 cm round Petri dishes. Seeds were stratified for four days at 4 ˚C and then incubated for four days at 20˚C under short day (8 hours light: 16 hours dark) conditions. The Petri dishes were tilted about 30˚ from vertical in a growth chamber equipped with red and blue LEDs (70.7 µE red light and 15.3 µE blue light). Starting from subjective dawn at day five, cycles of 160 min light and 320 min dark were given for three days. This sample was collected 280 minutes after subjective dawn on the fifth day; 120 minutes after lights-off.

value: CCA1-34 (CCA1-ox)

value: 5 Days


title: CCA1-34_dark_early_rep2

description: Seedlings were entrained in short days for four days and then transferred to cycles of 160 min light and 320 min dark for three days. This sample was collected two hours after lights off, 280 minutes after dawn on the sixth day.

source_name: CCA1-34 6 day old seedling, 120 minutes after transfer to darkness, morning

growth_protocol: About 100 seedlings were grown on a filter paper laid on 1xMSMO, 3% sucrose, 0.9% agar (Cat # A1296, Sigma) in 6 cm round Petri dishes. Seeds were stratified for four days at 4 ˚C and then incubated for four days at 20˚C under short day (8 hours light: 16 hours dark) conditions. The Petri dishes were tilted about 30˚ from vertical in a growth chamber equipped with red and blue LEDs (70.7 µE red light and 15.3 µE blue light). Starting from subjective dawn at day five, cycles of 160 min light and 320 min dark were given for three days. This sample was collected 280 minutes after subjective dawn on the sixth day; 120 minutes after lights-off.

value: 6 Days


title: Col_dark_early_rep1

source_name: Columbia 5 day old seedling, 120 minutes after transfer to darkness, morning

growth_protocol: About 100 seedlings were grown on a filter paper laid on 1xMSMO, 3% sucrose, 0.9% agar (Cat # A1296, Sigma) in 6 cm round Petri dishes.  Seeds were stratified for four days at 4 ˚C and then incubated for four days at 20˚C under short day (8 hours light: 16 hours dark) conditions.  The Petri dishes were tilted about 30˚ from vertical in a growth chamber equipped with red and blue LEDs (70.7 µE red light and 15.3 µE blue light).  Starting from subjective dawn at day five, cycles of 160 min light and 320 min dark were given for three days.  This sample was collected 280 minutes after subjective dawn on the fifth day; 120 minutes after lights-off.

extract_protocol: Samples were transferred to 1.5 ml tube and immediately frozen by liquid nitrogen and stored at –80˚C.  Samples were collected using infra-red (IR) goggles (Night Vision model NCB4, Night Owl Optics, NY) to avoid light exposure.  100 mg frozen tissue samples were ground by pestle and electric motor.  Total RNA was extracted using RNeasy Plant Mini kit (Qiagen, CA).


title: pSD-86 + F

status: Public on Jun 22 2007

city: Bordeaux

first: Richard

last: Iggo

address: 229 cours de l'Argonne

department: Bergonie Cancer Institute

country: France

institute: University of Bordeaux

description: see Duss et al for further details

hyb_protocol: Affymetrix

scan_protocol: Affymetrix

data_processing: RMA

source_name: human mammary epithelial cells (HMECs)

label_protocol: IVT then Enzo

growth_protocol: Mammosphere medium

extract_protocol: RNeasy

treatment_protocol: Fulvestrant

tag: Reduction mammoplasty cell expressing gusA


title: Col_dark_late_rep2

description: Seedlings were entrained in short days for four days and then transferred to cycles of 160 min light and 320 min dark for three days. This sample was collected two hours after lights off, 1240 minutes after dawn on the sixth day.

source_name: Columbia 6 day old seedling, 120 minutes after transfer to darkness, night

growth_protocol: About 100 seedlings were grown on a filter paper laid on 1xMSMO, 3% sucrose, 0.9% agar (Cat # A1296, Sigma) in 6 cm round Petri dishes. Seeds were stratified for four days at 4 ˚C and then incubated for four days at 20˚C under short day (8 hours light: 16 hours dark) conditions. The Petri dishes were tilted about 30˚ from vertical in a growth chamber equipped with red and blue LEDs (70.7 µE red light and 15.3 µE blue light). Starting from subjective dawn at day five, cycles of 160 min light and 320 min dark were given for three days. This sample was collected 1240 minutes after subjective dawn on the sixth day; 120 minutes after lights-off.


title: Col_dark_late_rep1

description: Seedlings were entrained in short days for four days and then transferred to cycles of 160 min light and 320 min dark for three days. This sample was collected two hours after lights off, 1240 minutes after dawn on the fifth day.

source_name: Columbia 5 day old seedling, 120 minutes after transfer to darkness, night time

growth_protocol: About 100 seedlings were grown on a filter paper laid on 1xMSMO, 3% sucrose, 0.9% agar (Cat # A1296, Sigma) in 6 cm round Petri dishes.  Seeds were stratified for four days at 4 ˚C and then incubated for four days at 20˚C under short day (8 hours light: 16 hours dark) conditions.  The Petri dishes were tilted about 30˚ from vertical in a growth chamber equipped with red and blue LEDs (70.7 µE red light and 15.3 µE blue light).  Starting from subjective dawn at day five, cycles of 160 min light and 320 min dark were given for three days.  This sample was collected 1240 minutes after subjective dawn on the fifth day; 120 minutes after lights-off.


title: Col_dark_early_rep2

source_name: Columbia 6 day old seedling, 120 minutes after transfer to darkness, morning


title: CCA1-34_dark_late_rep2

source_name: CCA1-34 6 day old seedling, 120 minutes after transfer to darkness, night

value: CCA1-34 (CCA1-OX)


title: CCA1-34_dark_late_rep1

source_name: cca1-34 5 day old seedling, 120 minutes after transfer to darkness, night

growth_protocol: About 100 seedlings were grown on a filter paper laid on 1xMSMO, 3% sucrose, 0.9% agar (Cat # A1296, Sigma) in 6 cm round Petri dishes. Seeds were stratified for four days at 4 ˚C and then incubated for four days at 20˚C under short day (8 hours light: 16 hours dark) conditions. The Petri dishes were tilted about 30˚ from vertical in a growth chamber equipped with red and blue LEDs (70.7 µE red light and 15.3 µE blue light). Starting from subjective dawn at day five, cycles of 160 min light and 320 min dark were given for three days. This sample was collected 1240 minutes after subjective dawn on the fifth day; 120 minutes after lights-off.


title: pSD-82 + pSD-84 + F

description: see Duss et al for further details

tag: Reduction mammoplasty cell expressing ESR1 and BMI1


title: Col_dark_early_rep3

description: Seedlings were entrained in short days for four days and then transferred to cycles of 160 min light and 320 min dark for three days. This sample was collected two hours after lights off, 280 minutes after dawn on the seventh day.

source_name: Columbia 7 day old seedling, 120 minutes after transfer to darkness, morning

growth_protocol: About 100 seedlings were grown on a filter paper laid on 1xMSMO, 3% sucrose, 0.9% agar (Cat # A1296, Sigma) in 6 cm round Petri dishes. Seeds were stratified for four days at 4 ˚C and then incubated for four days at 20˚C under short day (8 hours light: 16 hours dark) conditions. The Petri dishes were tilted about 30˚ from vertical in a growth chamber equipped with red and blue LEDs (70.7 µE red light and 15.3 µE blue light). Starting from subjective dawn at day five, cycles of 160 min light and 320 min dark were given for three days. This sample was collected 280 minutes after subjective dawn on the seventh day; 120 minutes after lights-off.


title: pSD-84 + F

description: see Duss et al for further details

tag: Reduction mammoplasty cell expressing BMI1


title: C_C6

status: Public on Jun 21 2007

city: New York

first: Elisa

last: Wurmbach

state: NY

address: 1 Gustave L. Levy Place

department: Hematology/Oncology

institute: Mount Sinai School of Medicine

description: normal liver tissue

hyb_protocol: Following fragmentation, 15 ug of cRNA were hybridized according to the standardized protocol from Affymetrix.

scan_protocol: Affymetrix standard procedure

data_processing: MAS probe set signal intensity

source_name: human liver; normal liver tissue

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

tag: normal liver tissue


title: CCA1-34_dark_late_rep3

source_name: CCA1-34 (CCA1-ox) 7 day old seedling, 120 minutes after transfer to darkness, night


title: hg_NY53

description: high-grade dysplastic liver tissue

source_name: human liver; high-grade dysplastic liver tissue

tag: high-grade dysplastic liver tissue


title: pSD-86 + E2

description: see Duss et al for further details

treatment_protocol: Estradiol


title: ve_M63B

description: very early HCC

source_name: human liver; very early HCC

tag: very early HCC


title: A_2m25

description: advanced HCC

source_name: human liver; advanced HCC

tag: advanced HCC


title: C_C7

description: normal liver tissue


title: pSD-82 + pSD-84 + E2

description: see Duss et al for further details


title: ve_M47

description: very early HCC


title: pSD-84 + E2

description: see Duss et al for further details


title: pSD-82 + E2

description: see Duss et al for further details

tag: Reduction mammoplasty cell expressing ESR1


title: cin_NY42B

source_name: human liver; cirrhotic liver tissue from patients without HCC


title: ve_2m41

description: very early HCC


title: CCA1-34_dark_early_rep3

source_name: CCA1-34 (CCA1-ox)  7 day old seedling, 120 minutes after transfer to darkness, morning


title: ve_2m57

description: very early HCC


title: pSD-82 + F

description: see Duss et al for further details


title: e_2m51

description: early HCC

source_name: human liver; early HCC

tag: early HCC


title: hg_NY29

description: high-grade dysplastic liver tissue


title: lg_NY11

description: low-grade dysplastic liver tissue

source_name: human liver; low-grade dysplastic liver tissue

tag: low-grade dysplastic liver tissue


title: hg_NY61

description: high-grade dysplastic liver tissue


title: lg_NY56

description: low-grade dysplastic liver tissue


title: lg_NY24

description: low-grade dysplastic liver tissue


title: lg_NY57

description: low-grade dysplastic liver tissue


title: hg_NY58

description: high-grade dysplastic liver tissue


title: lg_NY49

description: low-grade dysplastic liver tissue


title: ci_NY43

description: cirrhotic liver tissue

source_name: human liver; cirrhotic liver tissue

tag: cirrhotic liver tissue


title: lg_NY51

description: low-grade dysplastic liver tissue


title: ci_NY37

description: cirrhotic liver tissue


title: ci_NY78

description: cirrhotic liver tissue


title: aa_NY234

description: very advanced HCC

source_name: human liver; very advanced HCC

tag: very advanced HCC


title: hg_NY55

description: high-grade dysplastic liver tissue


title: lg_NY48

description: low-grade dysplastic liver tissue


title: ci_NY33

description: cirrhotic liver tissue


title: c_B51

description: normal liver tissue


title: lg_NY13

description: low-grade dysplastic liver tissue


title: c_B53

description: normal liver tissue


title: ci_NY35

description: cirrhotic liver tissue


title: aa_NY31

description: very advanced HCC


title: e_B7

description: early HCC


title: c_NY106

description: normal liver tissue


title: e_M75

description: early HCC


title: cin_NY50

description: cirrhotic liver tissue from patients without HCC


title: aa_NY74

description: very advanced HCC


title: c_M101

description: normal liver tissue


title: e_M45B

description: early HCC


title: cin_NY20

tag: cirrhotic liver tissue from patients without HCC


title: hg_NY28

description: high-grade dysplastic liver tissue


title: ve_B5

description: very early HCC


title: ci_NY19

description: cirrhotic liver tissue


title: c_NY104

description: normal liver tissue


title: hg_NY15

description: high-grade dysplastic liver tissue


title: c_NY102

description: normal liver tissue


title: c_NY103

description: normal liver tissue


title: Adult Whole Fly biological rep2

city: Glasgow

first: Jing

last: Wang or Venkat Chintapalli

state: Scotland

address: Dumbarton Road

department: Molecular Genetics

institute: University of Glasgow

description:
The Canton-S adult flies.
amplification: 1-round

hyb_protocol: Following fragmentation, 10 ug of cRNA (or according to the affy IVT protocol)  were hybridized for 16 hr at 45C on GeneChip Drosophila Genome 2 Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.

scan_protocol: GeneChips were scanned using the GeneChip scanner 3000 7G.

data_processing: The data were analyzed with GCOS1.4 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.

organism: Drosophila melanogaster

source_name: Adult Whole Fly

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 2 ug total RNA (Expression Analysis Technical Manual, 2004, Affymetrix)

growth_protocol: Wild-type Drosophila melanogaster (Canton S strain) were raised on standard medium on a 12:12 h L:D cycle, at 23C, and at 55% r.h. To facilitate the collection of accurately staged adults, a laying population of around 12 males and 12 females were transferred to fresh vials daily. When adults subsequently emerged, they were transferred to fresh vials on the day of emergence, and used 7 days later. Where larvae were used, these were third instar.

extract_protocol: Total RNA was extracted using RNeasy Micro kit (Invitrogen) according to the manufacturer's instructions.

treatment_protocol: Flies were anaesthetised briefly by chilling on ice, then immediately dissected.

tag: tissue

value: Canton-S, 12 female and  12 male flies, 7 days old


title: Adult Whole Fly biological rep3


title: lg_NY23

description: low-grade dysplastic liver tissue


title: Adult Testes biological rep2

description:
The testes only, excluding the accessory glands and associated tissues.
amplification: 1-round

source_name: Adult Testes

value: Canton-S 60 male flies, 7 days old


title: ci_NY17

description: cirrhotic liver tissue


title: ci_NY3

description: cirrhotic liver tissue


title: ci_NY8

description: cirrhotic liver tissue


title: c_NY101

description: normal liver tissue


title: Adult Testes biological rep4


title: Adult Whole Fly biological rep4


title: Larvae Wandering Tubules biological rep4

description:
Tubules dissected from third-instar wandering larvae as above.
amplification: 1-round

source_name: Larval Wandering Malpighian Tubule

value: Canton-S, 30 wandering third instar larvae