title: Rectosigmoid - 8262

description:
Quality metric = 28S to 18S: 1.45
Patient Age: 40-50
Gender: Male
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 300
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Diarrhea
Presenting Symptoms: Nausea
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Rectosigmoid
Histology: Adenocarcinoma


title: Breast - 8222

status: Public on Mar 31 2005

type: RNA

city: Phoenix

first: Erin

last: Curley

state: AZ

address: 445 N. 5th Street

country: USA

institute: IGC

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 40
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Fibrocystic disease?: No
Pathological T: 2
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma

molecule: total RNA

organism: Homo sapiens

source_name: Breast


title: Ovary - 8178

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 28
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Papillary Serous Carcinoma

source_name: Ovary


title: Breast - 37977

description:
Quality metric = 28S to 18S: 1.24
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Family History of Cancer?: No
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 16-20
Primary Site: Breast
Histology: Ductal Carcinoma


title: Colon - 8204

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 34
Presenting Symptoms: Bright red stools
Presenting Symptoms: Diarrhea
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma arising in a villous adenoma

source_name: Colon


title: Lung - 31903

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 3
Presenting Symptoms: Persistent Cough
Workplace or household smokers?: No
Pathological T: 2
Pathological N: 1
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Primary Site: Lung
Histology: Adenosquamous Carcinoma

source_name: Lung


title: Breast - 31901

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Mammogram: Yes
Number of years in which a mammogram was obtained?: 36-40
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Pathological T: 1c
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 1
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Lobular Carcinoma


title: Colon - 31877

description:
Quality metric = 28S to 18S: 1.14
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 6
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Kidney - 31879

description:
Quality metric = 28S to 18S: 1.64
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma

source_name: Kidney


title: Kidney - 4202

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 26
Pathological T: 3b
Pathological N: 0
Pathological M: 0
Pathological Stage: 3
Pathological Grade: 3
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Breast - 31881

description:
Quality metric = 28S to 18S: 1.03
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Lung - 31907

description:
Quality metric = 28S to 18S: 1.0
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 66-70
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 63
Workplace or household smokers?: Yes
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1A
Pathological Grade: 2
Primary Site: Lung
Histology: Papillary adenocarcinoma


title: Kidney - 4192

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Prior Therapy: Radiation
Pathological T: 3a
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Osseous
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Kidney - 4197

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 45
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2
Pathological Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: R thigh mass - 31846

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 80-90
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 60
Prior Therapy: Radiation
Pathological T: 2b
Pathological N: 0
Pathological M: 0
Pathological Stage: 3
Pathological Multiple Tumours: No
Pathological Staged During or Following Multimodality Therapy: Yes
Primary Site: Soft Tissue Sarcoma
Histology: Malignant fibrous histiocytoma

source_name: R thigh mass


title: Ovary - 31836

description:
Quality metric = 28S to 18S: 1.58
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Abdominal pain
Primary Site: Ovary
Histology: Serous Adenocarinoma


title: Endometrium - 31840

description:
Quality metric = 28S to 18S: 1.53
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Primary Site: Endometrium
Histology: Endometrioid carcinoma

source_name: Endometrium


title: Ovary - 31842

description:
Quality metric = 28S to 18S: 1.22
Patient Age: 20-30
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Dysgerminoma


title: Breast - 31834

description:
Quality metric = 28S to 18S: 1.58
Patient Age: 40-50
Gender: Female
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: None
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 31871

description:
Quality metric = 28S to 18S: 1.56
Patient Age: 80-90
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 24
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 31828

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 27
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Lung - 31822

description:
Quality metric = 28S to 18S: 1.34
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Workplace or household smokers?: Yes
Primary Site: Lung
Histology: Adenocarcinoma, NOS


title: Breast - 31865

description:
Quality metric = 28S to 18S: 1.55
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Number of years of use? (Oral contraceptives): None
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: None
Primary Site: Breast
Histology: Ductal Carcinoma


title: Adrenal Gland - 31832

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Presenting Symptoms: Constipation
Presenting Symptoms: Diarrhea
Screening studies performed?: Yes
Retreatment T: X
Retreatment N: X
Retreatment M: 1
Retreatment Metastatic Sites: Adrenals
Retreatment Stage: 4
Retreatment Grade: 2
Primary Site: Colon
Histology: Metastatic Adenocarcinoma

source_name: Adrenal gland


title: Cervix - 31824

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 30-40
Gender: Female
Ethnic Background: American Indian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 22
Have you ever been diagnosed as having HPV on your PAP smear?: No
Pathological T: 1b1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B1
Pathological Grade: 3
Primary Site: Cervix Uteri
Histology: Squamous cell carcinoma, non-keratinizing

source_name: Cervix


title: Liver - 31830

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 51
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Presenting Symptoms: Vomiting
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Colon
Histology: Metastatic Adenocarcinoma

source_name: Liver


title: Breast - 31861

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Family History of Cancer?: No
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 11-15
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 31818

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigars
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Uterus - 31826

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: American Indian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Pathological T: 3a
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Other
Pathological Stage: 4B
Pathological Grade: 3
Primary Site: Endometrium
Histology: Serous adenocarcinoma (papillary serous)


title: Breast - 31867

description:
Quality metric = 28S to 18S: 1.35
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 21-25
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Omentum - 31810

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Primary Site: Ovary
Histology: Metastatic Papillary Serous Carcinoma

source_name: Omentum


title: Uterine Corpus - 31814

description:
Quality metric = 28S to 18S: 1.22
Patient Age: 50-60
Gender: Female
Ethnic Background: American Indian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 11
Primary Site: Endometrium
Histology: Endometrioid carcinoma

source_name: Uterine Corpus


title: Colon - 31820

description:
Quality metric = 28S to 18S: 1.51
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Presenting Symptoms: Diarrhea
Presenting Symptoms: Nausea
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Breast - 29313

description:
Quality metric = 28S to 18S: 1.37
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: Yes
Family History of Cancer?: No
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 31816

description:
Quality metric = 28S to 18S: 1.45
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 11
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 6-10
Primary Site: Breast
Histology: Metaplastic Carcinoma


title: Lung - 31812

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Colon - 29291

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Lung - 29277

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 40
Workplace or household smokers?: No
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 3
Primary Site: Lung
Histology: Mucoepidermoid Carcinoma


title: Colon - 29287

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 1
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma


title: Ovary - 29265

description:
Quality metric = 28S to 18S: 2.7
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Presenting Symptoms: Bloating
Pathological T: 1a
Pathological N: 0
Pathological M: 0
Pathological Stage: 1A
Pathological Grade: 1
Primary Site: Ovary
Histology: Endometrioid Carcinoma


title: Breast - 29303

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 150
Prior Therapy: Chemotherapy
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Abdominal Wall Fascia - 29293

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Retreatment T: X
Retreatment N: X
Retreatment M: 1
Retreatment Metastatic Sites: Other
Retreatment Stage: 4B
Retreatment Grade: 2
Primary Site: Endometrium
Histology: Metastatic Endometrioid carcinoma

source_name: Abdominal wall fascia


title: Kidney - 29279

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Primary Site: Kidney
Histology: Papillary renal cell carcinoma


title: Colon - 29263

description:
Quality metric = 28S to 18S: 1.33
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 10
Presenting Symptoms: Bright red stools
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Corpus uteri - 29269

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Clinical Question: Stage
Clinical Value: No AJCC Staging Scheme for this Site/Histology
Primary Site: Myometrium
Clinical Question: Histology
Clinical Value: Ewing's sarcoma

source_name: Corpus uteri


title: Uterus - 29275

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Pathological T: 1c
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 1
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Uterine Corpus - 29259

description:
Quality metric = 28S to 18S: 1.31
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Bladder - 29253

description:
Quality metric = 28S to 18S: 1.57
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Primary Site: Bladder
Histology: Transitional cell carcinoma

source_name: Bladder


title: Cervix Uteri - 29251

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Have you ever been diagnosed as having HPV on your PAP smear?: No
Pathological T: 1b1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B1
Pathological Grade: 2
Primary Site: Cervix Uteri
Histology: Squamous cell carcinoma, verrucous

source_name: Cervix Uteri


title: Peritoneum - 29257

description:
Quality metric = 28S to 18S: 1.29
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: Yes
Family History of Cancer?: No
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Vaginal bleeding
Primary Site: Ovary
Histology: Metastatic Adenocarcinoma

source_name: Peritoneum


title: Small Intestine - 29247

description:
Quality metric = 28S to 18S: 1.81
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Have you ever had mononucleousis?: No
Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: Yes
Primary Site: Small Intestine
Histology: Metastatic Follicular Lymphoma

source_name: Small Intestine


title: Perihepatic Mass - 29243

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Primary Site: Ovary
Histology: Metastatic Adenocarcinoma

source_name: Perihepatic Mass


title: Lung - 8290

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 45
Presenting Symptoms: Persistent Cough
Workplace or household smokers?: Yes
Pathological T: 2
Pathological N: 1
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Ovary - 29249

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Abdominal pain
Primary Site: Ovary
Histology: Papillary Serous Adenocarcinoma

source_name: Ovary


title: Colon - 29255

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 17
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 2
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Mucinous Carcinoma

source_name: Colon


title: Ovary - 29227

description:
Quality metric = 28S to 18S: 1.57
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Primary Site: Ovary
Histology: Papillary Serous Adenocarcinoma


title: Uterus - 29239

description:
Quality metric = 28S to 18S: 1.72
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Primary Site: Endometrium
Histology: Endometrioid carcinoma

source_name: Uterus


title: Lung - 29233

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Presenting Symptoms: Persistent Cough
Workplace or household smokers?: Yes
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1A
Pathological Grade: 3
Primary Site: Lung
Histology: Large cell carcinoma

source_name: Lung


title: Breast - 23954

description:
Quality metric = 28S to 18S: 1.66
Patient Age: 30-40
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 120
Prior Therapy: Chemotherapy
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 16-20
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma

source_name: Breast


title: Lung - 2491

description:
Quality metric = 28S to 18S: 1.47
Gender: Female
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Persistent Cough
Workplace or household smokers?: Yes
Primary Site: Lung
Histology: Large cell carcinoma


title: Breast - 23975

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 24
Mammogram: No
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Pathological T: 2
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 3
Primary Site: Breast
Histology: Ductal Carcinoma


title: Peritoneum - 23960

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Retreatment T: X
Retreatment N: X
Retreatment M: 1
Retreatment Metastatic Sites: Other
Retreatment Stage: 4
Retreatment Grade: 3
Retreatment Stage During or Following Multimodality Therapy: No
Primary Site: Ovary
Histology: Metastatic Carcinoma, NOS

source_name: Soft Tissue Abdominal Mass


title: Colon - 29241

description:
Quality metric = 28S to 18S: 1.42
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 13
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Breast - 23944

description:
Quality metric = 28S to 18S: 1.53
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Mammogram: No
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma In-situ (DCIS) with focal Comedo Carcinoma


title: Lung - 23952

description:
Quality metric = 28S to 18S: 1.47
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Primary Site: Lung
Histology: Bronchioloalveolar carcinoma


title: Ovary - 29229

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Clinical Question: Stage
Clinical Value: No AJCC Staging Scheme
Clinical Question: Grade
Clinical Value: 1
Primary Site: Ovary
Clinical Question: Histology
Clinical Value: Papillary serous tumor of low malignant potential


title: Ovary - 23936

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Presenting Symptoms: Vaginal bleeding
Pathological T: 2b
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 1
Primary Site: Endometrium
Histology: Endometrioid adenocarcinoma with sguamous metaplasia


title: Ovary - 23938

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Pathological T: 3c
Pathological N: 0
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Ovary
Histology: Papillary Serous Adenocarcinoma


title: Colon - 23940

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Mucinous Carcinoma


title: Rectosigmoid Colon - 23946

description:
Quality metric = 28S to 18S: 1.51
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 15
Presenting Symptoms: Bright red stools
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Rectosigmoid
Histology: Adenocarcinoma

source_name: Rectosigmoid Colon


title: Omentum - 23948

description:
Quality metric = 28S to 18S: 1.32
Patient Age: 60-70
Gender: Female
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 210
Prior Therapy: Chemotherapy
Primary Site: Unknown
Histology: Metastatic Papillary Serous Adenocarcinoma


title: Omentum - 23956

description:
Quality metric = 28S to 18S: 1.26
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 60
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 6-10
Primary Site: Fallopian Tube
Histology: Metastatic Adenocarcinoma, NOS


title: Uterus - 29231

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Pathological T: 2b
Pathological N: 0
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 1
Primary Site: Endometrium
Histology: Endometrioid carcinoma

source_name: Endometrium


title: Uterus - 23932

description:
Quality metric = 28S to 18S: 1.36
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 15
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Breast - 23922

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 20
Mammogram: Yes
Number of years in which a mammogram was obtained?: 26-30
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 11-15
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 16-20
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Lung - 23950

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Clinical Question: Stage
Clinical Value: No AJCC Staging Scheme for this Site/Histology
Primary Site: GI Tract, NOS
Clinical Question: Histology
Clinical Value: Metastatic Mucinous adenocarcinoma consistent with gastrointestinal carcinoma


title: Breast - 23916

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 6
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 0-5
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 23904

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Pathological T: 3a
Pathological N: 1
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 1
Primary Site: Ovary
Histology: Benign serous cystadenoma of borderline malignancy


title: Omentum - 23910

description:
Quality metric = 28S to 18S: 1.0
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Presenting Symptoms: Abdominal pain
Retreatment T: X
Retreatment N: X
Retreatment M: 1
Retreatment Metastatic Sites: Hepatic
Retreatment Stage: 4
Retreatment Grade: X
Primary Site: Ovary
Histology: Metastatic Papillary Serous Adenocarcinoma

source_name: Omentum


title: Colon - 23908

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: American Indian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 40
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 1
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Kidney - 23918

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Female
Ethnic Background: American Indian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma

source_name: Kidney


title: Breast - 23920

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 11-15
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Colon - 23924

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Constipation
Presenting Symptoms: Diarrhea
Presenting Symptoms: Vomiting
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma


title: Renal Pelvis - 23912

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Primary Site: Renal Pelvis
Histology: Squamous cell carcinoma

source_name: Renal Pelvis


title: Breast - 23914

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Mammogram: Yes
Number of years in which a mammogram was obtained?: 31-35
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 6-10
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Colon - 23880

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Presenting Symptoms: Bright red stools
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma arising in a villous adenoma


title: Breast - 23902

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 9
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 21-25
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Omentum - 23866

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 11
Presenting Symptoms: Abdominal pain
Clinical Grade: 3
Primary Site: Peritoneum
Histology: Metastatic Papillary serous carcinoma

source_name: Uterine Serosa


title: Kidney - 23888

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Uterus - 22251

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Pathological T: 3a
Pathological N: 1
Pathological M: 1
Pathological Metastatic Sites: Lymph Nodes
Pathological Stage: 4B
Pathological Grade: 3
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Colon - 23876

description:
Quality metric = 28S to 18S: 1.42
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Chewing Tobacco
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 12
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Breast - 23886

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 22
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 22263

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 25
Mammogram: Yes
Number of years in which a mammogram was obtained?: 26-30
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 16-20
Pathological T: 2
Pathological N: 2a
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 3
Pathological Multiple Tumors: Yes
Pathological Stage During or Following Multimodality Therapy: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Colon - 22247

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Presenting Symptoms: Black tarry stools
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Lung - 23900

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 15
Presenting Symptoms: Persistent Cough
Workplace or household smokers?: No
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 3
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Kidney - 23896

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Prostate - 22249

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
PSA: Elevated
Current status of disease: Under Therapy
Pathological T: 3b
Pathological N: 0
Pathological M: 0
Pathological Stage: 3
Pathological Grade: 3
Pathological Gleason Score: 7
Primary Site: Prostate
Histology: Adenocarcinoma, NOS

source_name: Prostate


title: Breast - 2324

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 8
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 21-25
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 22269

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 9
Mammogram: Yes
Number of years in which a mammogram was obtained?: 26-30
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: Yes
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 31-35
Pathological T: 2
Pathological N: 1a
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: X
Primary Site: Breast
Histology: Lobular Carcinoma


title: Rectum - 23882

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Retreatment T: 3
Retreatment N: 0
Retreatment M: 0
Retreatment Stage: 2A
Retreatment Grade: 2
Retreatment Dukes Stage: B
Primary Site: Rectum
Histology: Adenocarcinoma

source_name: Rectum


title: Breast - 22259

description:
Quality metric = 28S to 18S: 1.69
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 23864

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 76
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Breast - 23898

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 13
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 11-15
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Lung - 22235

description:
Quality metric = 28S to 18S: 1.37
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 16
Presenting Symptoms: SOB
Workplace or household smokers?: No
Primary Site: Lung
Histology: Bronchioloalveolar carcinoma


title: Breast - 2323

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 0-5
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 22229

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Breast - 22239

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 11-15
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 0-5
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 22233

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 22223

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 7
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 11-15
Pathological T: 3
Pathological N: 2a
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 3
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Colon - 22245

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Nausea
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Mucinous Carcinoma


title: Colon - 22237

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Pipe
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Abdominal Pain
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Colon - 22227

description:
Quality metric = 28S to 18S: 1.23
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Type of Tobacco Use: Pipe
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Screening studies performed?: Yes
Diagnosis made by: Stool blood test (guiac)
Primary Site: Colon
Histology: Adenocarcinoma


title: Lung - 22255

description:
Quality metric = 28S to 18S: 1.52
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Persistent Cough
Workplace or household smokers?: Yes
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Breast - 22241

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 22
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 0-5
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 1
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Rectosigmoid - 22225

description:
Quality metric = 28S to 18S: 1.32
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Chewing Tobacco
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 31
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Rectosigmoid
Histology: Adenocarcinoma

source_name: Rectosigmoid


title: Ovary - 22218

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Abdominal mass
Primary Site: Ovary
Histology: Endometrioid Carcinoma


title: Liver - 22202

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 4
Pathological T: X
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: X
Primary Site: Exocrine Pancreas
Histology: Adenocarcinoma, NOS

source_name: Liver


title: Lung - 22208

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 32
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 3
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Bladder or Kidney - 22273

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 3
Clinical Question: Stage
Clinical Value: No AJCC scheme for unknown primary
Clinical Question: Grade
Clinical Value: 2
Primary Site: Urinary tract, NOS
Clinical Question: Histology
Clinical Value: Papillary transitional cell carcinoma

source_name: Urinary Tract, NOS


title: Ovary - 1353

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Presenting Symptoms: Abdominal pain
Pathological T: 3c
Pathological N: X
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Ovary
Histology: Papillary Serous Carcinoma

source_name: L Adnexa


title: Colon - 1354

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 12
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 3
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma

source_name: Colon


title: Breast - 22214

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 32
Mammogram: Yes
Number of years in which a mammogram was obtained?: 16-20
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 11-15
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 22198

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 65
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Papillary renal cell carcinoma


title: Paracolic gutter - 1355

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Pathological T: 3c
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Pleura
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Peritoneum
Histology: Metastatic Papillary Serous Carcinoma


title: Ileum - 22212

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Have you ever been diagnosed as having HPV on your PAP smear?: No
Primary Site: Cervix Uteri
Histology: Metastatic Squamous Cell carcinoma

source_name: Ileum


title: Lung - 1503

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Pipe
Alcohol Consumption?: Yes
Family History of Cancer?: No
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Retreatment T: X
Retreatment N: X
Retreatment M: 1
Retreatment Metastatic Sites: Pulmonary
Retreatment Grade: 2
Primary Site: Bladder
Histology: Metastatic non-small cell carcinoma

source_name: Lung


title: Breast - 22204

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 24
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 11-15
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological Multiple Tumors: Yes
Primary Site: Breast
Histology: Ductal Carcinoma

source_name: Breast


title: Lung - 1502

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Workplace or household smokers?: No
Pathological T: 2
Pathological N: 2
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 2
Primary Site: Lung
Histology: Bronchioloalveolar carcinoma


title: R adnexa or metastatic transverse colon nodule - 1350

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 18
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Mucinous Adenocarinoma


title: Ovary - 1351

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 4
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: X
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Ovary
Histology: Papillary Serous Carcinoma

source_name: Ovary


title: Breast - 21808

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 27
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 16-20
Oophorectomy?: Yes
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Pathological T: 1c
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Multiple Tumors: Yes
Pathological ER: Negative
Pathological PR: Negative
Primary Site: Breast
Histology: Lobular Carcinoma


title: Pelvic Lymph Node - 1310

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 60
Pathological T: 4a
Pathological N: 2
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Urinary Bladder
Histology: Urothelial (transitional cell) carcinoma

source_name: Pelvic lymph node


title: Colon - 2049

description:
Quality metric = 28S to 18S: 2.01
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Screening studies performed?: No
Diagnosis made by: Sigmoidoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Colon - 1315

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 15
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: is
Pathological N: 0
Pathological M: 0
Pathological Stage: 0
Primary Site: Colon
Histology: Carcinoma in situ arising in a villous adenoma


title: Breast - 1322

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 36
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Mammogram calcifications?: Yes
Primary Site: Breast
Histology: Intraductal Carcinoma


title: Omentum - 1319

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 120
Prior Therapy: Chemotherapy
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Metastatic Papillary Serous Carcinoma


title: Ovary - 1313

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 4
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Pleura
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Ovary
Histology: Papillary Serous Carcinoma


title: Liver or Omentum - 1308

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 30-40
Gender: Female
Ethnic Background: American Indian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Pathological T: 3
Pathological N: 2
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Colon
Histology: Metastatic Adenocarcinoma

source_name: Liver or Omentum


title: Kidney - 1306

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Clinical T: 2
Clinical N: 0
Clinical M: 0
Clinical Stage: 2
Clinical Grade: 3
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Lung - 1316

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Presenting Symptoms: Hemoptysis
Presenting Symptoms: Persistent Cough
Presenting Symptoms: SOB
Presenting Symptoms: Weight Loss
Workplace or household smokers?: Yes
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 2
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Ovary - 1311

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 18
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Endometrioid Carcinoma


title: Abdominal wall mass - 1321

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Retreatment T: 3a
Retreatment N: X
Retreatment M: 0
Retreatment Stage: Unknown
Retreatment Grade: X
Primary Site: Ovary
Histology: Metastatic Carcinoma, NOS

source_name: Abdominal wall mass


title: Kidney - 1304

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 13
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma

source_name: Kidney


title: Prostate - 1324

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
PSA: Elevated
# of years PSA Tested?: 0-5
Cancer discovered by digital exam?: Yes
Current status of disease: Under Therapy
Pathological T: 4
Pathological N: 1
Pathological M: 0
Pathological Stage: 4
Pathological Grade: 3
Pathological Gleason Score: 8-10
Primary Site: Prostate
Histology: Adenocarcinoma, Acinar Type


title: Colon - 1293

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Clinical T: 3c
Clinical N: 0
Clinical M: 0
Clinical Stage: 3C
Clinical Grade: 3
Primary Site: Ovary
Histology: Metastatic Papillary Serous Adenocarcinoma


title: Lung - 1299

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Chewing Tobacco
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Type of Tobacco Use: Pipe
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Workplace or household smokers?: Yes
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 3
Primary Site: Lung
Histology: Adenocarcinoma, NOS


title: Omentum - 1003

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: 0
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Primary Site: Ovary
Histology: Metastatic Papillary Serous Adenocarcinoma

source_name: Omentum


title: Rectum - 1043

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 20-30
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 109
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 4
Pathological N: 0
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Pathological Stage During or Following Multimodality Therapy: Yes
Primary Site: Rectum
Histology: Adenocarcinoma


title: Breast - 1017

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 5
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Clinical T: 1c
Clinical N: 1
Clinical M: 0
Clinical Stage: 2A
Clinical Grade: 3
Clinical ER: Negative
Clinical PR: Negative
Clinical HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Lung - 1020

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Male
Ethnic Background: American Indian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 18
Presenting Symptoms: Persistent Cough
Presenting Symptoms: SOB
Presenting Symptoms: Weight Loss
Workplace or household smokers?: No
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 3
Pathological Multiple Tumors: Yes
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Omentum - 1022

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 15
Primary Site: Pelvic peritoneum
Histology: Metastatic Endometrial Stromal Sarcoma


title: Breast - 1307

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 27
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Pathological Multiple Tumors: Yes
Pathological ER: Negative
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal and Lobular carcinoma


title: Breast - 1048

description:
Quality metric = 28S to 18S: 1.41
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: None
Primary Site: Breast
Histology: Ductal Carcinoma


title: CD4+ CD25+ Foxp3- T cells

status: Public on Mar 23 2005

city: Seattle

first: Jeffrey

last: Rasmussen

state: WA

department: Immunology

institute: University of Washington

description:
Mice used were Foxp3-GFP knock-in B6/129 F2's of 5-8 weeks of age. Single cell suspensions of cells from spleens and lymph nodes of 25 male mice were generated. Cell suspensions were enriched for CD4+ T cells by magnetic antibody mediated depletion using a cocktail of biotinylated antibodies specific for CD8, B220, CD11b, NK1.1, and DX5 followed by anti-biotin MACS beads. The remaining cells were labeled with CD4-PerCP, CD25-APC antibodies, and PE-conjugated streptavidin. CD4+PE- cells were sorted into four populations based on expression of GFP and CD25. Total RNA was isolated and biotinylated antisense cRNA was prepared using two cycles of in vitro amplification according to the Affymetrix Small Sample Labeling Protocol II. Biotinylated cRNA was fragmented and hybridized to Affymetrix GeneChip Mouse Genome 430 2.0 arrays.
Keywords = regulatory T cells
Keywords = Foxp3

organism: Mus musculus

source_name: mouse CD4+ T cells


title: lec1-1 Post-Mature Green Seed 1

city: Los Angeles

first: Bob

last: Goldberg

state: CA

address: 610 Charles E Young Drive East

department: Molecular, Cell and Developmental Biology

institute: University of California, Los Angeles

description:
Growth Condition: Plants were grown in a Conviron chamber under continuous light with fluorescent lamps at 20oC and 50% - 70% relative humidity. Experiments were performed as described (Le et. al., 2003, PNAS).

Microarray Methods: Total RNA was extracted using the Hot Borate Method (ref.). Fifteen micrograms of biotinylated complementary RNA (cRNA) was prepared as described (Le et. al., 2003, PNAS). cRNA was subsequently hybridized to Affymetrix ATH1 Arabidopsis GeneChips. The scanned array images were analyzed using Affymetrix Microarray Suite 5.0 (MAS 5.0) with a global scaling intensity set at 500.
Keywords = Arabidopsis
Keywords = seed development

organism: Arabidopsis thaliana

source_name: Genotype: Ws-0, lec1-1; Stage: Post-Mature Green Seed; Biological Replica: 1 of 2


title: Ovary - 1057

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Clinical Question: Stage
Clinical Value: No AJCC Staging Scheme for Unknown Primary
Primary Site: Unknown
Clinical Question: Histology
Clinical Value: Metastatic Adenocarcinoma


title: Abdominal Mass - 1060

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: American Indian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Chewing Tobacco
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 10
Pathological T: 3a
Pathological N: 1
Pathological M: 1
Pathological Metastatic Sites: Peritoneum
Pathological Stage: 4B
Pathological Grade: 3
Primary Site: Corpus Uteri
Histology: Metastatic Malignant mixed mullerian tumor

source_name: Abdominal mass


title: lec1-1 Mature Green Seed 2

source_name: Genotype: Ws-0, lec1-1; Stage: Mature Green Seed; Biological Replica: 2 of 2


title: lec1-1 Cotyledon Stage Seed 1

source_name: Genotype: Ws-0, lec1-1; Stage: Cotyledon Stage Seed; Biological Replica: 1 of 2


title: lec1-1 24-Hr Seed 1

description:
Growth Condition: Plants were grown in a Conviron chamber under continuous light with fluorescent lamps at 20oC and 50% - 70% relative humidity. Experiments were performed as described (Le et. al., 2003, PNAS).

Microarray Methods: Total RNA was extracted using the Hot Borate Method (ref.). Fifteen micrograms of biotinylated complementary RNA (cRNA) was prepared as described (Le et. al., 2003, PNAS). cRNA was subsequently hybridized to Affymetrix ATH1 Arabidopsis GeneChips. The scanned array images were analyzed using Affymetrix Microarray Suite 5.0 (MAS 5.0) with a global scaling intensity set at 500.
Keywords = Arabidopsis
Keywords = seed development
Lot batch = 2003282

source_name: Genotype: Ws-0, lec1-1; Stage: 24-Hr Fertilized Seed; Biological Replica: 1 of 2


title: lec1-1 Cotyledon Stage Seed 2

source_name: Genotype: Ws-0, lec1-1; Stage: Cotyledon Stage Seed; Biological Replica: 2 of 2


title: lec1-1 Post-Mature Green Seed 2

source_name: Genotype: Ws-0, lec1-1; Stage: Post-Mature Green Seed; Biological Replica: 2 of 2


title: CD4+ CD25lo Foxp3+ T cells


title: lec1-1 24-Hr Seed 2

source_name: Genotype: Ws-0, lec1-1; Stage: 24-Hr Fertilized Seed; Biological Replica: 2 of 2


title: lec1-1 Mature Green Seed 1

source_name: Genotype: Ws-0, lec1-1; Stage: Mature Green Seed; Biological Replica: 1 of 2


title: CD4+ CD25hi Foxp3+ T cells


title: Omentum - 1006

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: 1
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Ovary
Histology: Metastatic Papillary Serous Adenocarcinoma


title: CD4+ CD25- Foxp3- T cells


title: Uterus - 22220

description:
Quality metric = 28S to 18S: 1.06
Patient Age: 30-40
Gender: Female
Ethnic Background: Hispanic
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 20
Primary Site: Endometrium
Histology: Endometrioid carcinoma

source_name: Uterus


title: primary mouse hepatocyte, forskolin 1hr

status: Public on Mar 02 2005

city: La Jolla

first: Xinmin

last: Zhang

address: 10010 N. Torrey Pines Rd.

institute: Salk Institute

description:
Primary hepatocytes were prepared from 8 week old male C57BL6/J mice. Forskolin, a cAMP agonist, was added to the medium and cells were collected at 0hr, 1hr and 4hr after forskolin treatment. Total RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. Data was analyzed using dChIP software (www.dchip.org).
Keywords = liver, fasting, cAMP induced genes, forskolin, CREB target genes

source_name: primary mouse hepatocyte


title: primary mouse hepatocyte, forskolin 0hr


title: refed mouse liver

description:
8 week old male C57BL6/J mouse was fasted for 16 hr then given food for 4 hr. Liver RNA was extracted using Trizol reagent and purified using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.  Data was analyzed using dChIP software (www.dchip.org).
Keywords = liver, fasting, cAMP induced genes, forskolin, CREB target genes

source_name: refed mouse liver


title: primary mouse hepatocyte, forskolin 4hr


title: fasting mouse liver

description:
8 week old male C57BL6/J mouse was fasted for 20 hr to induce cAMP signaling in hepatocytes. Liver RNA was extracted using Trizol reagent and purified using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.  Data was analyzed using dChIP software (www.dchip.org).
!Sample_author: Xinmin,,Zhang
Keywords = liver, fasting, cAMP induced genes, forskolin, CREB target genes

source_name: fasting mouse liver


title: 24345613

status: Public on Feb 24 2005

city: Boston

first: Wenzhong Xiao

state: MA

address: 55 Fruit Street, GRV 1302

department: Department of Surgery

institute: Massachusetts General Hospital

description: waste skeletal muscle from reconstructive surgery

source_name: skeletal muscle


title: 21168358


title: 20369953


title: 4740750


title: 34854934


title: 20288482


title: 20923939


title: DSNP

status: Public on Feb 12 2005

city: Riverside

first: Julia

last: Bailey-Serres

address: Batchelor Hall

department: Center for Plant Cell Biology

institute: University of California Riverside

description: non-pPolysomal RNA (free mRNA or mRNA with one ribosome) under dehydration stress condition

source_name: non-polysomal mRNA under dehydration stress


title: 27131818


title: DSPS

description: Polysomal RNA (mRNA with two or more ribosomes) under dehydration stress condition

source_name: polysomal RNA under dehydration stress


title: blood, adrenal medulla: Ctx +/- replicate 3_e1_le1

status: Public on Feb 02 2005

first: Winnie

last: Liang

address: 445 N. Fifth Street

institute: Translational Genomics

description: cortex

source_name: blood, adrenal medulla


title: blood, adrenal medulla: BG -/- replicate 3_e1_le1

description: basal ganglia


title: NSPS

description: Polysomal RNA (mRNA with more than one ribosomes) under non-stress condition

source_name: polysomal RNA under non-stress condition


title: 30634927


title: NSNP

description: non-polysomal RNA (free mRNA or mRNA with one ribosome) under non-stress condition

source_name: non-polysomal RNA under non-stress condition


title: blood, adrenal medulla: BG -/- replicate 2_e1_le1

description: basal ganglia


title: blood, adrenal medulla: BG +/- replicate 2_e1_le1

description: basal ganglia


title: blood, adrenal medulla: BG +/- replicate 3_e1_le1

description: basal ganglia


title: blood, adrenal medulla: Ctx +/- replicate 2_e1_le1

description: cortex


title: blood, adrenal medulla: Ctx -/- replicate 2_e1_le1

description: cortex


title: blood, adrenal medulla: Ctx -/- replicate 3_e1_le1

description: cortex


title: Breast - 8270

status: Public on Jan 15 2005

description:
Quality metric = 28S to 18S: 1.8
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 9
Mammogram: No
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 4b
Pathological N: 2a
Pathological M: 1
Pathological Metastatic Sites: Pulmonary
Pathological Stage: 4
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma

source_name: Breast


title: Colon - 8260

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 45
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma

source_name: Colon


title: Breast - 8272

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 6-10
Pathological T: 2
Pathological N: 1mi
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Liver - 8268

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 50-60
Gender: Female
Ethnic Background: American Indian
Tobacco Use : Yes
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 2
Pathological T: 4
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4B
Pathological Grade: 3
Primary Site: Vulva
Histology: Metastatic Squamous cell carcinoma

source_name: Liver


title: Colon - 8266

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 17
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma


title: Breast - 8264

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 40-50
Gender: Female
Ethnic Background: American Indian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 43
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: Yes
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 6-10
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Lung - 8258

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 56
Presenting Symptoms: Persistent Cough
Presenting Symptoms: SOB
Presenting Symptoms: Weight Loss
Workplace or household smokers?: No
Pathological T: 2
Pathological N: 1
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Primary Site: Lung
Histology: Adenocarcinoma, NOS

source_name: Lung


title: Breast - 8254

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 10
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 11-15
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Primary Site: Breast
Histology: Ductal Carcinoma


title: Skin - 8244

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 15
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 1
Primary Site: Skin of arm
Histology: Squamous cell carcinoma, NOS

source_name: Skin


title: Lung - 8250

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 24
Presenting Symptoms: Persistent Cough
Presenting Symptoms: SOB
Workplace or household smokers?: Yes
Pathological T: 1
Pathological N: 0
Pathological M: 0
Pathological Stage: 1A
Pathological Grade: 2
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Stomach - 8252

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Asian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 3
Clinical Question: Grade
Clinical Value: Low
Clinical Question: Stage
Clinical Value: No AJCC scheme for this site and histology
Primary Site: Stomach
Clinical Question: Histology
Clinical Value: Gastrointestinal stromal tumor

source_name: Stomach


title: Breast - 8248

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 19
Mammogram: Yes
Number of years in which a mammogram was obtained?: 16-20
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 11-15
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 1
Pathological ER: Positive
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Lung - 8256

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Presenting Symptoms: Persistent Cough
Pathological T: 2
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 1
Primary Site: Lung
Histology: Squamous cell carcinoma


title: Breast - 8230

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 15
Mammogram: Yes
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: Yes
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 1
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 8238

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 32
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 8214

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 37
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Pathological T: 1c
Pathological N: 0(i-)
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 8210

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 20-30
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 150
Prior Therapy: Chemotherapy
Mammogram: No
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 6-10
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 1a
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: Yes
Primary Site: Breast
Histology: Ductal Carcinoma