title: Ovary - 4194

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Presenting Symptoms: Abdominal pain
Primary Site: Ovary
Histology: Papillary Serous Carcinoma


title: Endometrium - 3762

status: Public on Jul 01 2005

type: RNA

city: Phoenix

first: Erin

last: Curley

state: AZ

address: 445 N. 5th Street

country: USA

institute: IGC

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Primary Site: Endometrium
Histology: Endometrioid carcinoma

molecule: total RNA

organism: Homo sapiens

source_name: Endometrium


title: Colon - 4201

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Bright red stools
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma

source_name: Colon


title: Colon - 3765

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 40-50
Gender: Male
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Presenting Symptoms: Abdominal Pain
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Endometrium - 3768

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 7
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Kidney - 4203

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma

source_name: Kidney


title: Ovary - 3763

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Pathological T: 3c
Pathological N: 0
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 3
Primary Site: Ovary
Histology: Papillary Serous Adenocarcinoma

source_name: Ovary


title: Breast - 3766

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 90
Mammogram: Yes
Number of years in which a mammogram was obtained?: 16-20
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma

source_name: Breast


title: Ileum - 4215

description:
Quality metric = 28S to 18S: 1
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 50
Primary Site: Ileum
Histology: Malignant carcinoid tumor

source_name: Ileum


title: Vaginal Wall - 3758

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 20-30
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Have you ever been diagnosed as having HPV on your PAP smear?: No
Retreatment T: 4
Retreatment N: X
Retreatment M: 0
Retreatment Stage: 4A
Retreatment Grade: X
Primary Site: Cervix Uteri
Histology: Squamous cell carcinoma, non-keratinizing

source_name: Vaginal Wall


title: Colon - 3767

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 50-60
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Abdominal Pain
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Soft Tissue of Abdomen - 3754

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Presenting Symptoms: Bloating
Retreatment T: X
Retreatment N: X
Retreatment M: 1
Retreatment Metastatic Sites: Other
Retreatment Stage: 4
Retreatment Grade: 3
Primary Site: Ovary
Histology: Metastatic Endometrioid Carcinoma

source_name: Soft tissue of Abdomen


title: Kidney - 3760

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Clinical T: 3a
Clinical N: 0
Clinical M: 0
Clinical Stage: 3
Clinical Grade: 2
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Cervix - 3764

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 45
Have you ever been diagnosed as having HPV on your PAP smear?: No
Primary Site: Cervix
Histology: Squamous Cell carcinoma

source_name: Cervix


title: Bladder - 3753

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Pathological T: 3b
Pathological N: 1
Pathological M: X
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Urinary Bladder
Histology: Urothelial (transitional cell) carcinoma

source_name: Bladder


title: Bladder - 3756

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 90
Pathological T: 3a
Pathological N: 0
Pathological M: 0
Pathological Stage: 3
Pathological Grade: 2
Primary Site: Urinary Bladder
Histology: Squamous cell carcinoma


title: Colon - 3761

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 80-90
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigars
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 15
Presenting Symptoms: Constipation
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Kidney - 3751

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Breast - 31909

description:
Quality metric = 28S to 18S: 1
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 29311

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 49
Primary Site: Kidney
Histology: Papillary renal cell carcinoma


title: Corpus Uteri - 29301

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 28
Primary Site: Endometrium
Histology: Malignant mixed Mullerian tumor

source_name: Corpus Uteri


title: Breast - 31905

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Primary Site: Breast
Histology: Ductal Carcinoma


title: Omentum - 31850

description:
Quality metric = 28S to 18S: 1
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 9
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: 1
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 2
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Primary Site: Ovary
Histology: Metastatic Papillary Serous Adenocarcinoma

source_name: Omentum


title: Breast - 31838

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Primary Site: Breast
Histology: Lobular Carcinoma


title: Colon - 31852

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Presenting Symptoms: Abdominal Pain
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma


title: Kidney - 31869

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 7
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Uterus - 29305

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Primary Site: Endometrium
Histology: Endometrioid carcinoma

source_name: Uterus


title: Rectosigmoid - 31895

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Male
Ethnic Background: Asian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 60
Presenting Symptoms: Abdominal Pain
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 4
Pathological N: 0
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Rectosigmoid
Histology: Adenocarcinoma

source_name: Rectosigmoid


title: Ovary - 31848

description:
Quality metric = 28S to 18S: 1.0
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 12
Presenting Symptoms: Bloating
Pathological T: 3c
Pathological N: 1
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 3
Primary Site: Ovary
Histology: Papillary Serous Adenocarcinoma


title: Colon - 3750

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Male
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 51-55
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Type of Tobacco Use: Pipe
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 23
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Breast - 31893

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 37
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 2
Pathological N: 2a
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 2
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 29308

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Have you ever had esophagitis/reflux?: Yes
Pathological T: X
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Other
Pathological Stage: 4
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Primary Site: Stomach
Histology: Metastatic Signet Ring Cell Carcinoma


title: Pelvic Tumor - 31875

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Papillary Serous Adenocarcinoma

source_name: Pelvic Tumor


title: Breast - 31887

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 15
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 0-5
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Urinary Bladder - 29295

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Pathological T: 3a
Pathological N: 0
Pathological M: 0
Pathological Stage: 3
Pathological Grade: 3
Pathological Multiple Tumours: No
Pathological Staged During or Following Multimodality Theraphy: No
Primary Site: Urinary Bladder
Histology: Urothelial (transitional cell) carcinoma

source_name: Urinary Bladder


title: Colon - 29281

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 11
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological Multiple Tumors: Yes
Pathological Stage During or Following Multimodality Therapy: No
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma


title: Breast - 29235

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 1c
Pathological N: 0(i-)
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 2
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 29285

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 180
Prior Therapy: Chemotherapy
Mammogram: No
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Pathological T: 4b
Pathological N: 3a
Pathological M: 0
Pathological Stage: 3C
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: Yes
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 29299

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Carcinoid tumor with atypical features


title: Breast - 31873

description:
Quality metric = 28S to 18S: 1
Patient Age: 50-60
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: Yes
Mammogram: Yes
Number of years in which a mammogram was obtained?: 21-25
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Colon - 29267

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Retreatment T: 4
Retreatment N: X
Retreatment M: 0
Retreatment Stage: 4A
Retreatment Grade: X
Primary Site: Endometrium
Histology: Metastatic Mucinous adenocarcinoma


title: Breast - 29237

description:
Quality metric = 28S to 18S: 1
Patient Age: 60-70
Gender: Female
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Cervix - 29273

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 20-30
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Have you ever been diagnosed as having HPV on your PAP smear?: No
Primary Site: Cervix
Histology: Adenocarcinoma, NOS


title: Prostate - 29283

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
PSA: Elevated
# of years PSA Tested?: 6-10
Cancer discovered by digital exam?: No
Current status of disease: Under Therapy
Pathological T: 2c
Pathological N: 0
Pathological M: 0
Pathological Stage: 2
Pathological Grade: 2
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological Gleason Score: 5-6
Primary Site: Prostate
Histology: Adenocarcinoma, NOS

source_name: Prostate


title: Soft Tissue of Knee - 29289

description:
Quality metric = 28S to 18S: 1.9
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Primary Site: Soft Tissue of Knee
Histology: Ewings sarcoma/primitive neuroectodermal tumor

source_name: Soft Tissue of Knee


title: Breast - 29245

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Prior Therapy: Chemotherapy
Relapse Since Primary Treatment: No
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 21-25
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 0-5
Primary Site: Breast
Histology: Ductal Carcinoma


title: Colon - 23958

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 15
Presenting Symptoms: Constipation
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 1
Pathological Dukes Stage: B
Primary Site: Colon
Histology: Adenocarcinoma

source_name: Colon


title: Breast - 2495

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Mammogram: Yes
Oral contraceptives?: Yes
Primary Site: Breast
Histology: Ductal Carcinoma


title: Lymph Node - 23906

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Lymphadenopathy
Have you ever had mononucleousis?: No
Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No
Primary Site: Lymph Nodes (Nodal Lymphoma)
Histology: Follicular lymphoma

source_name: Lymph Node


title: Breast - 23874

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Mammogram: Yes
Number of years in which a mammogram was obtained?: 16-20
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 6-10
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 2
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Positive
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 23934

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 20-30
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Presenting Symptoms: Abdominal pain
Primary Site: Ovary
Histology: Clear cell adenocarcinoma

source_name: Ovary


title: Ovary - 23930

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Abdominal mass
Primary Site: Ovary
Histology: Mucinous cystic tumor of low malignant potential


title: Breast - 2322

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 28
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma

source_name: Breast


title: Bladder - 2328

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Primary Site: Bladder
Histology: Papillary transitional cell carcinoma


title: Endometrium - 23928

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Primary Site: Endometrium
Histology: Endometrioid carcinoma

source_name: Endometrium


title: Ovary - 23884

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Pathological T: 2b
Pathological N: 0
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 4
Primary Site: Ovary
Histology: Serous Adenocarinoma


title: Breast - 23926

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 13
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 11-15
Pathological T: 3
Pathological N: 0
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 1
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Lobular Carcinoma


title: Breast - 2321

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 60
Prior Therapy: Chemotherapy
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 6291

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 30-40
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 21
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Endometrioid Carcinoma


title: Breast - 2319

description:
Quality metric = 28S to 18S: 2.2
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Mammogram: Yes
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: No
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 23862

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Mucinous Adenocarinoma


title: Corpus Uteri - 2317

description:
Quality metric = 28S to 18S: 1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Kidney - 2316

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 3
Primary Site: Kidney
Histology: Papillary renal cell carcinoma

source_name: Kidney


title: Liver - 2313

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Screening studies performed?: Yes
Primary Site: Colon
Histology: Metastatic Mucinous Carcinoma

source_name: Liver


title: Liver - 2311

description:
Quality metric = 28S to 18S: 1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Screening studies performed?: Yes
Primary Site: Colon
Histology: Metastatic Mucinous Carcinoma


title: Vulva - 22257

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 15
Pathological T: 2
Pathological N: 1
Pathological M: X
Pathological Stage: Unknown
Pathological Grade: 1
Primary Site: Vulva
Histology: Squamous cell carcinoma

source_name: Vulva


title: Rectosigmoid - 2310

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 13
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological Dukes Stage: A
Primary Site: Rectosigmoid
Histology: Adenocarcinoma


title: Breast - 22271

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Female
Ethnic Background: Asian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 33
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: No
Number of years of use? (Oral contraceptives): None
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 0-5
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Omentum - 22216

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 24
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Pathological T: X
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Other
Pathological Stage: 4
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Primary Site: Peritoneum
Histology: Metastatic Papillary Serous Carcinoma


title: Colon - 22231

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 19
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Mucinous Carcinoma


title: Endometrium - 22253

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Breast - 2314

description:
Quality metric = 28S to 18S: 1
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Years of Tobacco Use: None
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 27
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 2312

description:
Quality metric = 28S to 18S: 1
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Mammogram: Yes
Number of years in which a mammogram was obtained?: 26-30
Oral contraceptives?: No
Number of years of use? (Oral contraceptives): None
Oophorectomy?: Yes
Fibrocystic disease?: Yes
Hormonal therapy (# of Years)?: 11-15
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 22210

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 180
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Ovary - 20296

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Endometrioid Carcinoma


title: Breast - 22196

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 32
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Pathological T: 2
Pathological N: 1a
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Positive
Pathological PR: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 20308

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 17
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 6-10
Primary Site: Breast
Histology: Ductal Carcinoma


title: Kidney - 20309

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: R hip/buttock mass - 1654

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 30
Primary Site: Soft Tissue of buttock
Histology: Chondrosarcoma, extraskeletal

source_name: R hip/buttock mass


title: Thyroid - 1657

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Primary Site: Thyroid
Histology: Papillary carcinoma, follicular variant

source_name: Thyroid


title: Endometrium - 1659

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Colon - 1646

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 21
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Undifferentiated Carcinoma


title: Ovary - 1639

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 45
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Papillary Serous Carcinoma


title: Ureter - 1647

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 7
Primary Site: Ureter
Histology: Transitional cell carcinoma

source_name: Ureter


title: Endometrium - 1634

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Kidney - 20295

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 40-50
Gender: Male
Ethnic Background: American Indian
Tobacco Use : Yes
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Prostate - 1317

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 57
PSA: Elevated
# of years PSA Tested?: 6-10
Cancer discovered by digital exam?: Yes
Primary Site: Prostate
Histology: Adenocarcinoma, NOS


title: Ovary - 1643

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Primary Site: Ovary
Histology: Serous Adenocarinoma


title: Ovary - 1270

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 5
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Diarrhea
Presenting Symptoms: Nausea
Presenting Symptoms: Vomiting
Screening studies performed?: No
Primary Site: Colon
Histology: Metastatic Adenocarcinoma


title: Ovary - 1636

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 18
Presenting Symptoms: Bloating
Presenting Symptoms: Vaginal bleeding
Primary Site: Unknown
Histology: Metastatic Malignant Neoplasm, NOS


title: Ovary - 1323

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 8
Primary Site: Ovary
Histology: Endometrioid Carcinoma


title: Kidney - 1271

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 40-50
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 60
Clinical T: 1b
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 4
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Endometrium - 1637

description:
Quality metric = 28S to 18S: 1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Kidney - 1633

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 180
Prior Therapy: Radiation
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Breast - 1290

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 20
Mammogram: Yes
Number of years in which a mammogram was obtained?: 6-10
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 0-5
Pathological T: 1c
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 1241

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 7
Presenting Symptoms: Abdominal pain
Primary Site: Ovary
Histology: Papillary Serous Adenocarcinoma


title: Omentum - 1235

description:
Quality metric = 28S to 18S: 1.7
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Bloating
Pathological T: X
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Other
Pathological Stage: 4
Pathological Grade: 3
Primary Site: Peritoneum
Histology: Metastatic Serous Adenocarinoma

source_name: Omentum


title: Endometrium - 1240

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 33
Primary Site: Endometrium
Histology: Endometrioid carcinoma


title: Breast - 1239

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 6-10
Primary Site: Breast
Histology: Ductal Carcinoma


title: Uterus - 1236

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Primary Site: Endometrium
Histology: Sarcoma, NOS

source_name: Uterus


title: Kidney - 1320

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Male
Ethnic Background: Hispanic
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 14
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Kidney - 1296

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 15
Primary Site: Kidney
Histology: Papillary renal cell carcinoma


title: Colon - 1259

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 0-5
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 12
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 3
Pathological Dukes Stage: A
Primary Site: Colon
Histology: Adenocarcinoma


title: Soft tissue of abdomen - 1233

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Primary Site: Soft Tissue of abdomen
Histology: Liposarcoma

source_name: Soft tissue of abdomen


title: Colon - 1232

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Presenting Symptoms: Bright red stools
Screening studies performed?: No
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Colon - 1237

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Female
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 6
Presenting Symptoms: Abdominal Pain
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma In situ


title: Colon - 1655

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 80-90
Gender: Male
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 14
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Pancreas - 1229

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 70-80
Gender: Female
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 100
Clinical Question: Histology
Clinical Value: Non-functional islet cell tumor
Clinical Question: Stage
Clinical Value: No AJCC Staging Scheme For this Histology/Site
Primary Site: Pancreas

source_name: Pancreas


title: Small intestine - 1222

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Clinical Question: Stage
Clinical Value: No AJCC Staging Scheme for this Site/Histology
Primary Site: Corpus Uteri
Clinical Question: Histology
Clinical Value: Metastatic Leiomyosarcoma

source_name: Small intestine


title: Small intestine - 1226

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 16-20
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 6
Clinical Question: Stage
Clinical Value: No AJCC Staging Scheme for this site/histology
Clinical Question: T
Clinical Value: Tumor size is 1cm-2cm
Clinical Question: N
Clinical Value: Lymph nodes positive
Clinical Question: M
Clinical Value: No distant metastatic disease
Primary Site: Small intestine
Clinical Question: Histology
Clinical Value: Neuroendocrine carcinoma, NOS


title: Kidney - 1225

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 29
Clinical T: 1a
Clinical N: 0
Clinical M: 0
Clinical Stage: 1
Clinical Grade: 1
Clinical Multiple Tumors: No
Clinical Stage During or Following Multimodality Therapy: No
Primary Site: Kidney
Histology: Conventional (clear cell) renal carcinoma


title: Colon - 1228

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 60-70
Gender: Female
Ethnic Background: African-American
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 30
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Colon
Histology: Adenocarcinoma


title: Lymph Node - 1042

description:
Quality metric = 28S to 18S: 1.2
Patient Age: 50-60
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Lymphadenopathy
Presenting Symptoms: Night sweats
Have you ever had mononucleousis?: No
Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No
Primary Site: Lymph Nodes (Nodal Lymphoma)
Histology: Follicular lymphoma


title: Breast - 1035

description:
Quality metric = 28S to 18S: 1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 4
Mammogram: Yes
Number of years in which a mammogram was obtained?: 26-30
Oral contraceptives?: Yes
Number of years of use? (Oral contraceptives): 0-5
Oophorectomy?: No
Fibrocystic disease?: Yes
Hormonal therapy (# of Years)?: 0-5
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 1040

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 13
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Serous Adenocarinoma


title: Endometrium - 1272

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Primary Site: Endometrium
Histology: Malignant mixed Mullerian tumor


title: Stomach - 1049

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 12
Primary Site: Stomach
Histology: Adenocarcinoma

source_name: Stomach


title: Mesenteric Lymph Node - 1002

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Have you ever had mononucleousis?: No
Have you ever had chemotherapy for any previous cancer prior to your current diagnosis?: No
Primary Site: Lymph Nodes (Nodal Lymphoma)
Histology: Diffuse large B-cell lymphoma

source_name: Mesenteric Lymph Node


title: Omentum - 1041

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Pathological T: X
Pathological N: X
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: X
Primary Site: Exocrine Pancreas
Histology: Adenocarcinoma, NOS

source_name: Abdominal wall


title: Breast - 1034

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 13
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Hormonal therapy (# of Years)?: 16-20
Primary Site: Breast
Histology: Ductal Carcinoma


title: Uterine Cervix - 1223

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 60
Primary Site: Uterine Cervix
Histology: Squamous Cell carcinoma

source_name: Uterine Cervix


title: Breast - 1033

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 60-70
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 26-30
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 18
Mammogram: Yes
Number of years in which a mammogram was obtained?: 21-25
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Hormonal therapy (# of Years)?: 26-30
Primary Site: Breast
Histology: Ductal Carcinoma

source_name: Breast


title: Breast - 1025

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 6
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: Yes
Mammogram calcifications?: Yes
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 1009

description:
Quality metric = 28S to 18S: 1.5
Patient Age: 80-90
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 20
Mammogram: Yes
Number of years in which a mammogram was obtained?: 11-15
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Hormonal therapy (# of Years)?: 0-5
Pathological T: 1c
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Positive
Primary Site: Breast
Histology: Ductal Carcinoma


title: Breast - 1008

description:
Quality metric = 28S to 18S: 1.6
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 12
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: No
Hormonal therapy (# of Years)?: 36-40
Pathological T: 1c
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 1
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Positive
Pathological PR: Positive
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Ovary - 1018

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Abdominal mass
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Primary Site: Ovary
Histology: Endometrioid Carcinoma

source_name: Ovary


title: Bladder - 1019

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 70-80
Gender: Male
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 36-40
Type of Tobacco Use: Cigarettes
Type of Tobacco Use: Cigars
Alcohol Consumption?: No
Family History of Cancer?: No
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Primary Site: Bladder
Histology: Transitional cell carcinoma

source_name: Bladder


title: Breast - 1032

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 7
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: No
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Pathological T: 1c
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2A
Pathological Grade: 3
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma


title: Omentum - 1059

description:
Quality metric = 28S to 18S: 1.4
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : No
Alcohol Consumption?: No
Family History of Cancer?: Yes
Prior Therapy: Chemotherapy
Prior Therapy: Surgical
Relapse Since Primary Treatment: Yes
Number of Years Until Relapse: 0-5
Presenting Symptoms: Abdominal pain
Presenting Symptoms: Bloating
Retreatment T: 3c
Retreatment N: X
Retreatment M: 0
Retreatment Stage: 3C
Retreatment Grade: 3
Primary Site: Ovary
Histology: Metastatic Clear cell adenocarcinoma


title: arf6 arf8 flowers_stage 11-12

status: Public on Jun 30 2005

city: Chapel Hill

first: Christine

last: Ellis

state: NC

address: 121 Coker Hall

institute: University of North Carolina at Chapel Hill

description: arf6 arf8 flowers, stage 11-12

data_processing: Affymetrix GeneChip Microarray Suite version 5.0

label: biotin

organism: Arabidopsis thaliana

source_name: flowers, stage 11-12

label_protocol: Approximately 7 µg of total RNA was processed to produce biotinylated cRNA targets.

growth_protocol: Plants were grown under long day conditions for 6 weeks

extract_protocol: Total RNA was extracted from frozen tissue using TRIzol reagent (Invitrogen)

treatment_protocol: untreated

tag: arf6 arf8 flowers, stage 11-12


title: arf6/arf6 ARF8/arf8 flowers_stage 1-10

description: arf6/arf6 ARF8/arf8 flowers, stage 1-10

source_name: flowers, stage 1-10

tag: arf6/arf6 ARF8/arf8 flowers, stage 1-10


title: Columbia_stem

description: Columbia stem, approximately 0.5 cm of stem tissue immediately below the inflorescence

source_name: stem


title: arf6 arf8 flowers_stage 13-14

description: arf6 arf8 flowers, stage 13-14

source_name: flowers, stage 13-14

tag: arf6 arf8 flowers, stage 13-14


title: arf6/arf6 ARF8/arf8_stem

description: arf6/arf6 ARF8/arf8 stem, approximately 0.5 cm of stem tissue immediately below the inflorescence


title: arf6/arf6 ARF8/arf8 flowers_stage 11-12

description: arf6/arf6 ARF8/arf8 flowers, stage 11-12


title: arf6 arf8 flowers_stage 1-10

description: arf6 arf8 flowers, stage 1-10

tag: arf6 arf8 flowers, stage 1-10


title: arf6/arf6 ARF8/arf8 flowers_stage 13-14

description: arf6/arf6 ARF8/arf8 flowers, stage 13-14


title: arf6/arf6 ARF8/arf8 flowers_stage 1-14_IAA

description: arf6/arf6 ARF8/arf8 flowers, stage 1-14, sprayed with 10 uM indole-3-acetic acid in 1% methanol, 0.05% Tween-20

source_name: flowers, stage 1-14

treatment_protocol: Flowers, stage 1-14, sprayed with 10 uM indole-3-acetic acid in 1% methanol, 0.05% Tween-20

tag: arf6/arf6 ARF8/arf8 flowers, stage 1-14


title: Columbia flowers_stage 13-14

description: Columbia flowers, stage 13-14, untreated

tag: flowers, stage 13-14


title: arf6 arf8 flowers_stage 1-14_untreated

description: arf6 arf8 flowers, untreated

tag: arf6 arf8 flowers, stage 1-14


title: arf6 arf8_stem

description: arf6 arf8 stem, approximately 0.5 cm of stem tissue immediately below the inflorescence


title: Columbia flowers_stage 11-12

description: Columbia flowers, stage 11-12, untreated

tag: flowers, stage 11-12


title: arf6/arf6 ARF8/arf8 flowers_stage 1-14_untreated

description: arf6/arf6 ARF8/arf8 flowers, stage 1-14, untreated


title: Columbia flowers_stage 1-14_mock

description: Columbia flowers, stage 1-14, sprayed with 1% methanol, 0.05% Tween-20 30 minutes prior to harvest

treatment_protocol: Flowers, stage 1-14, sprayed with 1% methanol, 0.05% Tween-20 30 minutes prior to harvest

tag: Columbia flowers, stage 1-14,  mock treated


title: Columbia flowers_stage 1-10

description: Columbia flowers, stage 1-10, untreated

tag: flowers, stage 1-10


title: Columbia flowers_stage 1-14_untreated

description: Columbia flowers, stage 1-14, untreated

tag: Columbia flowers, stage 1-14, untreated


title: Columbia flowers_stage 1-14_IAA

description: Columbia flowers, stage 1-14, sprayed with 10 uM indole-3-acetic acid in 1% methanol, 0.05% Tween-20 30 minutes prior to harvest

treatment_protocol: Flowers, stage 1-14, sprayed with 10 uM indole-3-acetic acid in 1% methanol, 0.05% Tween-20 30 minutes prior to harvest

tag: Columbia flowers, stage 1-14, IAA treated


title: arf6 arf8 flowers_stage 1-14_IAA

description: arf6 arf8 flowers, stage 1-14, sprayed with 10 uM indole-3-acetic acid in 1% methanol, 0.05% Tween-20


title: 040721-R3

status: Public on Jun 27 2005

city: Aberdeen Proving Ground

first: James

middle: F

last: Dillman

state: MD

address: 3100 Ricketts Point Rd

department: Cell and Molecular Biology Branch

institute: U.S. Army Medical Research Institute of Chemical Defense

description:
Rhesus macaque (Macaca mulatta).  Female rhesus macaques were of Indian origin and weighed 4-5.5 kg at the time of blood sampling.  In a separate experiment, these animals were previously exposed to human butyrylcholinesterase (July 2003), physostigmine (October 2003), and huprezine A (December 2003).  These animals were certified to be in good health at the time of the blood collection (June 17, 2004).  Whole blood tissue from each donor was collected using a 5 cc syringe and immediately injected into a PAXgene™  Blood RNA Collection Tube (PreAnalytiX, Franklin Lakes, NJ).  Whole blood tissue was withdrawn from the right or left saphenous vein.    Approximately 1.0 mL of whole blood tissue was obtained from the rhesus macaques.   All samples were incubated in the PAXgene™ Blood RNA tube for 24 hrs at room temperature prior to RNA extraction.
Keywords = rhesus macaque
Keywords = macaca mulatta
Keywords = non-human primate
Keywords = blood

organism: Macaca mulatta

source_name: rhesus macaque whole blood


title: 040721-C4

description:
Cynomologus macaque (Macaca fascicularis).  To conserve animals, we acquired blood samples from NHPs already in use with other research protocols.  Male cynomologus macaques (Covance, Denver, PA) were wild caught and of Vietnamese origin.  In a separate experiment, these animals had been previously exposed to human butyrylcholinesterase and survived a 5.5xLD50 challenge of soman in December 2003.  The animals were certified to be in good health and weighed 3-4 kg at the time of the blood collection (May 13, 2004).  Whole blood tissue from each donor was collected using a 5 cc syringe and immediately injected into a PAXgene™  Blood RNA Collection Tube (PreAnalytiX, Franklin Lakes, NJ).  Whole blood tissue was withdrawn from the right or left saphenous vein.    Approximately 2.5 mL of whole blood tissue was obtained from the rhesus macaques.   All samples were incubated in the PAXgene™ Blood RNA tube for 24 hrs at room temperature prior to RNA extraction.
Keywords = cynomologus macaque
Keywords = non-human primate
Keywords = blood

organism: Macaca fascicularis

source_name: cynomologus macaque whole blood


title: 040721-H5

description:
Human blood samples (n=5) were collected in accordance with approved human use protocols at USAMRICD.    The test subjects were all Caucasian males ranging in age from 23-39 years of age at the time of the blood collection.  All human test subjects were in apparent good health at the time of the blood collection.  Whole blood tissue from each donor was collected using a 5 cc syringe and immediately injected into a PAXgene™  Blood RNA Collection Tube (PreAnalytiX, Franklin Lakes, NJ).  Whole blood tissue was withdrawn from the right or left saphenous vein.    Approximately 2.5 mL of whole blood tissue was obtained from the rhesus macaques.   All samples were incubated in the PAXgene™ Blood RNA tube for 24 hrs at room temperature prior to RNA extraction.
Keywords = blood
Keywords = human
Keywords = homo sapiens

source_name: human whole blood


title: 040721-R1

source_name: rhesus whole blood


title: 040721-A2

description:
African green monkey (Chlorocebus aethiops). To conserve animals, we acquired blood samples from NHPs already in use with other research protocols.  Male African green monkeys (n=4) were wild caught from the Caribbean island of St. Kitts.  These animals were naïve and certified in good health at the time of the blood collection.  These animals weighed 5.5-6.8 kg at the time of the blood collection.

Whole blood tissue from each donor was collected using a 5 cc syringe and immediately injected into a PAXgene™  Blood RNA Collection Tube (PreAnalytiX, Franklin Lakes, NJ).  Whole blood tissue was withdrawn from the right or left saphenous vein.    Approximately 2.5 mL of whole blood tissue was obtained from the rhesus macaques.   All samples were incubated in the PAXgene™ Blood RNA tube for 24 hrs at room temperature prior to RNA extraction.

Keywords = African green monkey
Keywords = non-human primate
Keywords = blood

organism: Chlorocebus aethiops

source_name: African green monkey whole blood


title: 040721-H1


title: 040721-R2


title: 040721-R4


title: 040721-C2


title: 040721-H2


title: 040721-C3


title: 040721-A3

description:
African green monkey (Chlorocebus aethiops). To conserve animals, we acquired blood samples from NHPs already in use with other research protocols.  Male African green monkeys (n=4) were wild caught from the Caribbean island of St. Kitts.  These animals were naïve and certified in good health at the time of the blood collection.  These animals weighed 5.5-6.8 kg at the time of the blood collection.
Keywords = African green monkey
Keywords = non-human primate
Keywords = blood


title: 040721-A4


title: 040728-H3


title: cMyb virus-infected replicate 1	(monocytes)

status: Public on Jun 14 2005

city: Albuquerque

first: Scott

middle: A.

last: Ness

state: NM

department: Internal Medicine

institute: U. of New Mexico HSC

description: Adenovirus-infected monocytes

hyb_protocol: standard Affymetrix procedures

scan_protocol: standard Affymetrix procedures

data_processing: Affymetrix Microarray Suite version 5.0

source_name: Primary human monocytes

label_protocol: Approximately 1 µg of total RNA was processed to produce biotinylated cRNA targets.

extract_protocol: Approximately 1x10^6 cells were infected with adenovirus expressing c-Myb and GFP for 16 hours, then total RNA was isolated using RNEasy kit (Qiagen).

tag: Monocytes from buffy coat preparation


title: 070421-H4


title: vMyb virus-infected replicate 1	(monocytes)

description: Adenovirus-infected monocytes

extract_protocol: Approximately 1x10^6 cells were infected with adenovirus expressing v-Myb and GFP for 16 hours, then total RNA was isolated using RNEasy kit (Qiagen).


title: control virus-infected replicate 1 (monocytes)

description: Adenovirus-infected monocytes

extract_protocol: Approximately 1x10^6 cells were infected with control adenovirus expressing GFP for 16 hours, then total RNA was isolated using RNEasy kit (Qiagen).


title: vMyb virus-infected replicate 2	(monocytes)

description: Adenovirus-infected monocytes


title: cMyb virus-infected replicate 2	(monocytes)

description: Adenovirus-infected monocytes


title: 040721-C1

description:
Cynomologus macaque (Macaca fascicularis).  To conserve animals, we acquired blood samples from NHPs already in use with other research protocols.  Male cynomologus macaques (Covance, Denver, PA) were wild caught and of Vietnamese origin.  In a separate experiment, these animals had been previously exposed to human butyrylcholinesterase and survived a 5.5xLD50 challenge of soman in December 2003.  The animals were certified to be in good health and weighed 3-4 kg at the time of the blood collection (May 13, 2004).  Whole blood tissue from each donor was collected using a 5 cc syringe and immediately injected into a PAXgene™  Blood RNA Collection Tube (PreAnalytiX, Franklin Lakes, NJ).  Whole blood tissue was withdrawn from the right or left saphenous vein.    Approximately 2.5 mL of whole blood tissue was obtained from the rhesus macaques.   All samples were incubated in the PAXgene™ Blood RNA tube for 24 hrs at room temperature prior to RNA extraction.
Keywords = African green monkey
Keywords = non-human primate
Keywords = blood


title: Col_Mock2

status: Public on Jun 01 2005

city: Tuscaloosa

first: Katrina

last: Ramonell

state: AL

address: 411 Hackberry Lane, Box 870344

department: Biological Sciences

institute: University of Alabama

description:
Growth Conditions and Treatments: Arabidopsis thaliana L. (Columbia-0) seeds were sterilized and grown hydroponically as previously described (Zhang et al., 2002, MPMI 15(9) 963-970). Briefly, Arabidopsis seeds were surface sterilized and allocated in 50 ml Falcon tubes containing 10 ml of liquid medium (1 X Murashige and Skoog Basal Salt Mixture + 2% Dextrose, pH 5.8). The tubes were incubated with gentle shaking in a growth chamber with the following settings: constant light at 125 µmol m-2 sec-1 at a temperature of 23 °C. After 14 days, the seedlings were treated with either hydrolyzed crab-shell chitin (Sigma-Aldrich, St. Louis, Missouri) at a final concentration of 100 µg/ml or the purified chito-tetramer  (degree of polymerization, d.p. = 4) or octamer (d.p. =8) at a final concentration of 1 µM. The control seedlings were similarly treated with an equivalent amount of water. Whole seedlings were collected 30 minutes after treatment, immediately frozen in liquid N2, and stored at –80 °C for later use. Three independent replicates were conducted.
RNA and Microarray Methods: Total RNA was extracted from the plants using a modified Trizol method (Chomczynski and Sashi, 1987) (see also Protocols Manual at the AFGC web page http://www.arabidopsis.org/info/2010_projects/comp_proj/AFGC/RevisedAFGC/AFGC_Protocols_Dec_2001L.pdf) and purified with a silica membrane column (Qiagen, RNeasy). Fifteen micrograms biotinylated complementary RNA (cRNA) was prepared and used to hybridize ATH1 Arabidopsis GeneChips (Affymetrix) using the Affymetrix manufacturer’s protocols. The array images were analyzed with the Affymetrix GeneChip Operating Software (GCOS) 1.1 with the target intensity set to 500. These data were imported into GeneSpring 7.0 (Silicon Genetics, Redwood City, CA, USA). To remove chip-to-chip signal variation, each measurement was divided by the 50.0th percentile of all measurements in that sample.  All samples were normalized to the reference data set, consisting of four replicates of Columbia-0, untreated. Each measurement for each gene was divided by the median of that gene’s intensity in the reference data set. The normalized values (Normalized Ratio) are reported along with the intensity values for this array.
Keywords = chitin, defense, elicitor, mutant, powdery mildew, Erysiphe cichoracearum
Lot batch = 510690

source_name: Genotype: Columbia-0, wild-type; Treatment: water; Biological Replicate: 2 of three


title: Col_Mock3

source_name: Genotype: Columbia-0, wild-type; Treatment: water; Biological Replicate: 3 of three


title: Col_8mer3

description:
Growth Conditions and Treatments: Arabidopsis thaliana L. (Columbia-0) seeds were sterilized and grown hydroponically as previously described (Zhang et al., 2002, MPMI 15(9) 963-970). Briefly, Arabidopsis seeds were surface sterilized and allocated in 50 ml Falcon tubes containing 10 ml of liquid medium (1 X Murashige and Skoog Basal Salt Mixture + 2% Dextrose, pH 5.8). The tubes were incubated with gentle shaking in a growth chamber with the following settings: constant light at 125 µmol m-2 sec-1 at a temperature of 23 °C. After 14 days, the seedlings were treated with either hydrolyzed crab-shell chitin (Sigma-Aldrich, St. Louis, Missouri) at a final concentration of 100 µg/ml or the purified chito-tetramer  (degree of polymerization, d.p. = 4) or octamer (d.p. =8) at a final concentration of 1 µM. The control seedlings were similarly treated with an equivalent amount of water. Whole seedlings were collected 30 minutes after treatment, immediately frozen in liquid N2, and stored at –80 °C for later use. Three independent replicates were conducted.
RNA and Microarray Methods: Total RNA was extracted from the plants using a modified Trizol method (Chomczynski and Sashi, 1987) (see also Protocols Manual at the AFGC web page http://www.arabidopsis.org/info/2010_projects/comp_proj/AFGC/RevisedAFGC/AFGC_Protocols_Dec_2001L.pdf) and purified with a silica membrane column (Qiagen, RNeasy). Fifteen micrograms biotinylated complementary RNA (cRNA) was prepared and used to hybridize ATH1 Arabidopsis GeneChips (Affymetrix) using the Affymetrix manufacturer’s protocols. The array images were analyzed with the Affymetrix GeneChip Operating Software (GCOS) 1.1 with the target intensity set to 500. These data were imported into GeneSpring 7.0 (Silicon Genetics, Redwood City, CA, USA). To remove chip-to-chip signal variation, each measurement was divided by the 50.0th percentile of all measurements in that sample.  All samples were normalized to the reference data set, consisting of four replicates of Columbia-0, untreated. Each measurement for each gene was divided by the median of that gene’s intensity in the reference data set. The normalized values (Normalized Ratio) are reported along with the intensity values for this array.
Keywords = chitin, defense, elicitor, mutant, powdery mildew, Erysiphe cichoracearum

source_name: Genotype: Columbia-0, wild-type; Treatment: purified chitin octamer; Biological Replicate: 3 of three


title: 040721-A1

description:
African green monkey (Chlorocebus aethiops)

To conserve animals, we acquired blood samples from NHPs already in use with other research protocols.  Male African green monkeys (n=4) were wild caught from the Caribbean island of St. Kitts.  These animals were naïve and certified in good health at the time of the blood collection.  These animals weighed 5.5-6.8 kg at the time of the blood collection.

Whole blood tissue from each donor was collected using a 5 cc syringe and immediately injected into a PAXgene™  Blood RNA Collection Tube (PreAnalytiX, Franklin Lakes, NJ).  Whole blood tissue was withdrawn from the right or left saphenous vein.    Approximately 2.5 mL of whole blood tissue was obtained from the rhesus macaques.   All samples were incubated in the PAXgene™ Blood RNA tube for 24 hrs at room temperature prior to RNA extraction.

Keywords = African green monkey
Keywords = non-human primate
Keywords = blood


title: control virus-infected replicate 2 (monocytes)

description: Adenovirus-infected monocytes


title: Col_CSC2

source_name: Genotype: Columbia-0, wild-type; Treatment: crab shell chitin; Biological Replicate: 2 of three


title: Col_Mock1

source_name: Genotype: Columbia-0, wild-type; Treatment: water; Biological Replicate: 1 of three


title: Col_CSC1

source_name: Genotype: Columbia-0, wild-type; Treatment: crab shell chitin; Biological Replicate: 1 of three


title: Col_8mer2

source_name: Genotype: Columbia-0, wild-type; Treatment: purified chitin octamer; Biological Replicate: 2 of three


title: Col_CSC3

source_name: Genotype: Columbia-0, wild-type; Treatment: crab shell chitin; Biological Replicate: 3 of three


title: Col_8mer1

source_name: Genotype: Columbia-0, wild-type; Treatment: purified chitin octamer; Biological Replicate: 1 of three


title: rdr6-15 42

status: Public on May 09 2005

city: Corvallis

first: Edwards

last: Allen

state: OR

address: 3021 Ag Life Sciences Building

department: Botany and Plant Pathology

institute: Oregon State University

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
rdr6-15 mutant allele

source_name: inflorescence stages 1 to 12


title: Col-0 40

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
Control for rdr6-15


title: rdr6-15 43


title: Total RNA - hypoxia stress

status: Public on May 31 2005

city: Riverside

first: Cristina

last: Branco-Price

state: CA

address: 2215 batchelor Hall

department: Botany and Plant Sciences

institute: University of California, Riverside

description: Total mRNA extracted from 7-d old seedlings, treated for 12h of hypoxia under  low light (45uM m-2 s-2) conditions.

source_name: 7d-old WT ler seedlings submitted to 12h hypoxia


title: rdr1-1 35

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
rdr1-1 mutant allele


title: rdr2-1 38

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
rdr2-1 mutant allele


title: Polysomal mRNA, non-stress

description: Large Polysome mRNA extracted from 7-d old seedlings, treated with low light (45uM m-2 s-2) conditions for 12h.

source_name: 7d-old WT ler seedlings


title: Polysomal mRNA - Hypoxia stress

description: Large Polysome mRNA extracted from 7-d old seedlings, treated for hypoxia under low light (45uM m-2 s-2) conditions for 12h.


title: rdr1-1 34


title: Col-0 41


title: rdr6-15 44


title: Total RNA, non-stressed

description: Total mRNA extracted from 7-d old seedlings, treated with low light (45uM m-2 s-2).


title: hyl1 31

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
hyl1-2 mutant allele


title: rdr1-1 33


title: rdr2-1 36


title: Col-0 39


title: hyl1 30


title: hst-15 29

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
hst-15 mutant allele


title: hst-15 27


title: hen1 25

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
hen1-1 mutant allele


title: hen1 26


title: hyl1 32


title: dcl3-1 22

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
dcl3-1 mutant allele


title: hen1 24


title: dcl3-121


title: dcl3-1 23


title: hst-15 28


title: dcl2-1 19

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
dcl2-1 mutant allele


title: dcl1-7 16

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
dcl1-7 mutant allele


title: dcl2-1 18


title: dcl1-7 17


title: dcl1-7 14


title: dcl2-1 20


title: Col-0 12

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
Control for dcl2, dcl3, rdr1, and rdr2 samples


title: Col-0 10


title: dcl1-7 15


title: Col-0 11


title: Ler 9

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
Control for dcl1-7 16 and dcl1-7 17 samples


title: Ler 5

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
Control for dcl1-7 13, dcl1-7 14, dcl1-7 15 and hen1 samples


title: Ler 7


title: Ler 8


title: Col-0 3

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
Control for hyl1 and hst-15 samples


title: Ler 6


title: dcl1-7 13


title: Ler 4


title: Col-0 2


title: Col-0 1


title: Spotted-dick RNAi 3

status: Public on May 06 2005

city: Cambridge

first: Andrew

middle: Robin

last: Page

address: Downing Street

department: Department of Genetics

country: United Kingdom

institute: University of Cambridge

description:
RNA extracted using Trizol from S2 cells treated with spotted-dick dsRNA and incubated for 5 days - replicate 3
Keywords = Spotted-dick

organism: Drosophila melanogaster

source_name: Drosophila S2 cells


title: GFP RNAi 3

description:
RNA extracted using Trizol from S2 cells treated with GFP dsRNA and incubated for 5 days - replicate 3
Keywords = Spotted-dick


title: GFP RNAi 2

description:
RNA extracted using Trizol from S2 cells treated with GFP dsRNA and incubated for 5 days - replicate 2
Keywords = Spotted-dick


title: contr_24h_1

status: Public on Apr 01 2005

city: Tuebingen

first: Oliver

last: Schoor

address: Auf der Morgenstelle 15

department: Institute for Cell Biology - Dept. of Immunology

country: Germany

institute: University of Tuebingen

description:
Aim: Assessment of mRNA expression changes in a cell line after 6 h and 24 h induction of autophagy by starvation
Sample: B-lymphoblastoid cell line Awells (IHW-No. 9090)
Culture conditions: 24 h in DMEM, 10% FCS, 37°C, to obtain background expression under standard culture conditions
RNA isolation: TRIzol (Invitrogen) followed by RNeasy-cleanup (QIAGEN)
Quality control: 2100 Bioanalyzer (Agilent), high quality RNA
cDNA synthesis and labeling: Standard Affymetrix protocol, BioArray High Yield RNA Transcript Labeling Kit (ENZO)
Hybridization: Standard Affymetrix EukGE-WS2v4 protocol
Scanning: Affymetrix GeneChip 3000 scanner
Normalization: Scaling over all probe sets, target intensity = 100
Keywords = autophagy

source_name: Awells cell line, 24h control, replicate 1 of 2


title: Spotted-dick RNAi 2

description:
RNA extracted using Trizol from S2 cells treated with spotted-dick dsRNA and incubated for 5 days - replicate 2
Keywords = Spotted-dick


title: Spotted-dick RNAi 1

description:
RNA extracted using Trizol from S2 cells treated with spotted-dick dsRNA and incubated for 5 days - replicate 1
Keywords = Spotted-dick


title: GFP RNAi 1

description:
RNA extracted using Trizol from S2 cells treated with GFP dsRNA and incubated for 5 days - replicate 1
Keywords = Spotted-dick


title: contr_24h_2

source_name: Awells cell line, 24h control, replicate 2 of 2


title: apoE-Aorta-32-weeks-1

status: Public on May 04 2005

city: Munich

first: Andreas

middle: Johann Richard

last: Habenicht

state: Bavaria

address: Pettenkoferstraße 9a

department: Medicine

institute: Ludwig Maximilians Universität München

description:
Aorta extracts of 32 weeks old C57BL/6J apoE-/- mice.
Keywords = mouse aorta microarray

organism: Mus musculus

source_name: total Aorta of 32 weeks old C57BL/6J-apoE-/-


title: apoE-Aorta-32-weeks-3


title: autoph_24h_2

description:
Aim: Assessment of mRNA expression changes in a cell line after 6 h and 24 h induction of autophagy by starvation
Sample: B-lymphoblastoid cell line Awells (IHW-No. 9090)
Culture conditions: 24 h in Hank's Balanced Salt Solution (HBSS) (37°C) to induce autophagy by starvation
RNA isolation: TRIzol (Invitrogen) followed by RNeasy-cleanup (QIAGEN)
Quality control: 2100 Bioanalyzer (Agilent), high quality RNA
cDNA synthesis and labeling: Standard Affymetrix protocol, BioArray High Yield RNA Transcript Labeling Kit (ENZO)
Hybridization: Standard Affymetrix EukGE-WS2v4 protocol
Scanning: Affymetrix GeneChip 3000 scanner
Normalization: Scaling over all probe sets, target intensity = 100

Keywords = autophagy

source_name: Awells cell line, 24h autophagy, replicate 2 of 2


title: contr_6h_1

description:
Aim: Assessment of mRNA expression changes in a cell line after 6 h and 24 h induction of autophagy by starvation
Sample: B-lymphoblastoid cell line Awells (IHW-No. 9090)
Culture conditions: 6 h in DMEM, 10% FCS, 37°C, to obtain background expression under standard culture conditions
RNA isolation: TRIzol (Invitrogen) followed by RNeasy-cleanup (QIAGEN)
Quality control: 2100 Bioanalyzer (Agilent), high quality RNA
cDNA synthesis and labeling: Standard Affymetrix protocol, BioArray High Yield RNA Transcript Labeling Kit (ENZO)
Hybridization: Standard Affymetrix EukGE-WS2v4 protocol
Scanning: Affymetrix GeneChip 3000 scanner
Normalization: Scaling over all probe sets, target intensity = 100

Keywords = autophagy

source_name: Awells cell line, 6h control


title: wt-Aorta-32-weeks-3

description:
total Aorta extracts of 32 weeks old C57BL/6J wild type mice.
Keywords = mouse aorta microarray

source_name: total Aorta of 32 weeks old C57BL/6J


title: wt-Aorta-32-weeks-1


title: autoph_6h_1

description:
Aim: Assessment of mRNA expression changes in a cell line after 6 h and 24 h induction of autophagy by starvation
Sample: B-lymphoblastoid cell line Awells (IHW-No. 9090)
Culture conditions: 6 h in Hank's Balanced Salt Solution (HBSS) (37°C) to induce autophagy by starvation
RNA isolation: TRIzol (Invitrogen) followed by RNeasy-cleanup (QIAGEN)
Quality control: 2100 Bioanalyzer (Agilent), high quality RNA
cDNA synthesis and labeling: Standard Affymetrix protocol, BioArray High Yield RNA Transcript Labeling Kit (ENZO)
Hybridization: Standard Affymetrix EukGE-WS2v4 protocol
Scanning: Affymetrix GeneChip 3000 scanner
Normalization: Scaling over all probe sets, target intensity = 100
Keywords = autophagy

source_name: Awells cell line, 6h autophagy


title: wt-Aorta-32-weeks-2

description:
total Aorta extracts of 32 weeks old C57BL/6J wild type mice
Keywords = mouse aorta microarray


title: Rectosigmoid - 8278

status: Public on Mar 31 2005

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 70-80
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 6-10
Type of Tobacco Use: Chewing Tobacco
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 10
Presenting Symptoms: Diarrhea
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Rectosigmoid
Histology: Adenocarcinoma

source_name: Rectosigmoid


title: autoph_24h_1

source_name: Awells cell line, 24h autophagy, replicate 1 of 2


title: Lung - 8280

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 41-45
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 22
Presenting Symptoms: SOB
Presenting Symptoms: Weight Loss
Workplace or household smokers?: No
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1B
Pathological Grade: 2
Primary Site: Lung
Histology: Squamous cell carcinoma

source_name: Lung


title: Breast - 8282

description:
Quality metric = 28S to 18S: 1.3
Patient Age: 50-60
Gender: Female
Ethnic Background: American Indian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: No
Days from Patient Diagnosis to Excision: 32
Mammogram: Yes
Number of years in which a mammogram was obtained?: 0-5
Oral contraceptives?: No
Oophorectomy?: Yes
Fibrocystic disease?: No
Mammogram calcifications?: Yes
Pathological T: 2
Pathological N: 1a
Pathological M: 0
Pathological Stage: 2B
Pathological Grade: 3
Pathological ER: Negative
Pathological PR: Negative
Pathological HER/2 Neu: Negative
Primary Site: Breast
Histology: Ductal Carcinoma

source_name: Breast


title: 00304AS12_1

status: Public on Apr 04 2005

city: Durham

first: Ann

middle: L.

last: Umbach

department: Biology Department/DCMB Group

institute: Duke University

description:
Plants are Col-0 transformed to be anti-sense for AOX1a (At3g22370; 35S CaMV promoter).  They were grown in the Duke University Phytotron.  Growth temperature was 23o C, light level was 350 µmol photons m-2 s-1 PAR with a 14 h photoperiod, and soil-less potting mix, without addition of fertilizer, was used.  At 21 days after seed sowing, leaves from the third or fourth pair were collected between 11:30 a.m. and noon.  RNA was extracted (RNeasy Plant Mini kit; QIAGEN, Inc.) and pooled from nine individuals.  Subsequent cDNA synthesis and labeled cRNA synthesis were conducted according to procedures described in the Affymetrix on-line literature with Affymetrix components.  Arrays and cRNA were submitted to the Duke Microarray Core Facility for hybridization, signal intensity data collection, and analysis of GeneChipTM internal control genes using Affymetrix protocols and MicroArray Suite version 5.0.
Keywords = AOX1a anti-sense
Keywords = alternative oxidase anti-sense
Keywords = rosette leaves
Keywords = moderate light
Lot batch = 4000153

source_name: transformed line rosette leaves, soil-grown


title: 00304WT_2

description:
Plants were grown in the Duke University Phytotron.  Growth temperature was 23o C, light level was 350 µmol photons m-2 s-1 PAR with a 14 h photoperiod, and soil-less potting mix, without addition of fertilizer, was used.  At 21 days after seed sowing, leaves from the third or fourth pair were collected between 11:30 a.m. and noon.  RNA was extracted (RNeasy Plant Mini kit; QIAGEN, Inc.) and pooled from nine individuals.  Subsequent cDNA synthesis and labeled cRNA synthesis were conducted according to procedures described in the Affymetrix on-line literature with Affymetrix components.  Arrays and cRNA were submitted to the Duke Microarray Core Facility for hybridization, signal intensity data collection, and analysis of GeneChipTM internal control genes using Affymetrix protocols and MicroArray Suite version 5.0.
Keywords = rosette leaves
Keywords = moderate light
Lot batch = 4000153

source_name: wild-type rosette leaves, soil grown


title: 00304AS12_2

description:
Plants are Col-0 transformed to be anti-sense for AOX1a (At3g22370; 35S CaMV promoter).  They were grown in the Duke University Phytotron.  Growth temperature was 23o C, light level was 350 µmol photons m-2 s-1 PAR with a 14 h photoperiod, and soil-less potting mix, without addition of fertilizer, was used.  At 21 days after seed sowing, leaves from the third or fourth pair were collected between 11:30 a.m. and noon.  RNA was extracted (RNeasy Plant Mini kit; QIAGEN, Inc.) and pooled from eight individuals.  Subsequent cDNA synthesis and labeled cRNA synthesis were conducted according to procedures described in the Affymetrix on-line literature with Affymetrix components.  Arrays and cRNA were submitted to the Duke Microarray Core Facility for hybridization, signal intensity data collection, and analysis of GeneChipTM internal control genes using Affymetrix protocols and MicroArray Suite version 5.0.
Keywords = AOX1a anti-sense
Keywords = alternative oxidase anti-sense
Keywords = rosette leaves
Keywords = moderate light
Lot batch = 4000153

source_name: transformant line rosette leaves, soil-grown


title: apoE-Aorta-32-weeks-2


title: 00304WT_1

description:
Plants were grown in the Duke University Phytotron.  Growth temperature was 23o C, light level was 350 µmol photons m-2 s-1 PAR with a 14 h photoperiod, and soil-less potting mix, without addition of fertilizer, was used.  At 21 days after seed sowing, leaves from the third or fourth pair were collected between 11:30 a.m. and noon.  RNA was extracted (RNeasy Plant Mini kit; QIAGEN, Inc.) and pooled from seven individuals.  Subsequent cDNA synthesis and labeled cRNA synthesis were conducted according to procedures described in the Affymetrix on-line literature with Affymetrix components.  Arrays and cRNA were submitted to the Duke Microarray Core Facility for hybridization, signal intensity data collection, and analysis of GeneChipTM internal control genes using Affymetrix protocols and MicroArray Suite version 5.0.
Keywords = rosette leaves
Keywords = moderate light
Lot batch = 4000153

source_name: wild-type rosette leaves, soil-grown


title: Liver - 8274

description:
Quality metric = 28S to 18S: 1.14
Patient Age: 40-50
Gender: Male
Ethnic Background: African-American
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 300
Prior Therapy: Chemotherapy
Prior Therapy: Radiation
Prior Therapy: Surgical
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Diarrhea
Presenting Symptoms: Nausea
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Primary Site: Rectosigmoid
Histology: Metastatic Adenocarcinoma

source_name: Liver


title: Liver - 8276

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 40-50
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 31-35
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 2
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Constipation
Presenting Symptoms: Vomiting
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 4
Pathological N: 0
Pathological M: 1
Pathological Metastatic Sites: Hepatic
Pathological Stage: 4
Pathological Grade: 2
Primary Site: Colon
Histology: Metastatic Adenocarcinoma


title: Lung - 8284

description:
Quality metric = 28S to 18S: 1.1
Patient Age: 50-60
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 11-15
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 1
Presenting Symptoms: Persistent Cough
Workplace or household smokers?: No
Pathological T: 1
Pathological N: 2
Pathological M: 0
Pathological Stage: 3A
Pathological Grade: 2
Primary Site: Lung
Histology: Mucin-producing adenocarcinoma


title: rdr2-1 37

description:
Inflorescence stages 1 to 12.  RNA was extracted using TRIzol, purified using Qiagen RNA Midi Kit, and labeled using Ambion MessageAmp.
rdr2-1 mutant allele

source_name: inflorescence stages 1 to 12