title: 1001701103_B23


title: 1001701103_B22

status: Public on Nov 19 2018

type: SRA

city: Kensington

first: Fabio

last: Zanini

state: NSW

address: High and Botany St

country: Australia

institute: University of New South Wales

library_source: transcriptomic

data_processing:
bcl2fastq demux
STAR mapping
Htseq-count 0.7+ gene counting
Stampy virus mapping
Custom script for filtering virus reads
Genome_build: grch38
Supplementary_files_format_and_content: One TSV for each sample containing the counts of gene expression.

molecule: total RNA

organism: Homo sapiens

source_name: blood (PBMCs)

extract_protocol:
No extraction, single cells are sorted into 0.4ul lysis buffer
Cells are lysed in lysis buffer containing Triton X-100, then RT using template switching oligo and preamplification for 21 cycles as in SmartSeq2 is performed. Cells with different levels of intracellular virus are cherry picked and sequencing libraries are made using illumina’s Nextera XT kit.

tag: tissue

value: blood

tag: patient id

tag: cell type

value: monocyte

tag: Sex

value: M

tag: diseaseseverity

value: control

tag: numberhumanuniquelymappedreads

tag: numbervirusreads

tag: age


title: 1001701103_C1

value: B cell


title: 1001701103_B21


title: 1001701605_I13

value: F

value: severe dengue


title: 1001701605_I12


title: 1001701605_I11

value: unknown


title: 1001701103_B19

value: cDC


title: 1001701103_C10


title: 1001701103_B20


title: 1001701605_I10

value: T cell


title: 1001701605_I9


title: 1001701605_I8


title: 1001701605_I7

value: NK cell


title: 1001701605_I6


title: 1001701605_I4


title: 1001701605_I3


title: 1001701605_I2


title: 1001701103_B18


title: 1001701605_I5


title: 1001701605_H23


title: 1001701103_B13


title: 1001701103_B9


title: 1001701103_B11


title: 1001701103_B12


title: 1001701103_B15


title: 1001701103_B8


title: 1001701103_B14


title: 1001701103_B10


title: 1001701103_B7


title: 1001701605_H22


title: 1001701605_H21


title: 1001701605_H20


title: 1001701103_B6


title: 1001701605_H19


title: 1001701103_B17


title: 1001701103_B4


title: 1001701605_H18


title: 1001701103_B16


title: 1001701103_B3


title: 1001701605_H17


title: 1001701103_B2


title: 1001701605_H16


title: 1001701605_H15


title: 1001701103_A23


title: 1001701103_A22


title: 1001701605_H12


title: 1001701605_H13


title: 1001701103_A21


title: 1001701605_H11


title: 1001701103_A20


title: 1001701605_H9


title: 1001701605_H10


title: 1001701103_A19


title: 1001701103_B5


title: 1001701103_A17


title: 1001701605_I1


title: 1001701103_A15


title: 1001701605_H8


title: 1001701103_A14


title: 1001701103_A16


title: 1001701605_H6


title: 1001701605_H4


title: 1001701103_A12


title: 1001701103_A13


title: 1001701605_H3


title: 1001701103_A11


title: 1001701605_H2


title: 1001701605_H14


title: 1001701103_B1


title: 1001701103_A18


title: 1001701605_H1


title: 1001701103_A10


title: 1001701605_G23


title: 1001701103_A8


title: 1001701605_G21


title: 1001701103_A7


title: 1001701103_A6


title: 1001701605_H7


title: 1001701605_G22


title: 1001701103_A9


title: 1001701605_H5


title: 1001701605_G19


title: 1001701103_A5


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title: 1001701605_G18


title: 1001701103_A3


title: 1001701103_A2


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title: 1001701605_G11


title: 1001701101_P21


title: 1001701605_G12


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title: 1001701605_F20


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title: 1001701101_P5


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title: 1001701605_F6


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title: 1001701605_F3


title: 1001701605_F4


title: 1001701101_O15


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title: 1001701101_O11


title: 1001701101_O9


title: 1001701101_O13


title: 1001701101_O12


title: 1001701101_O10


title: 1001701605_F1


title: 1001701101_O7


title: 1001701605_E21


title: 1001701605_E22


title: 1001701101_O6


title: 1001701605_E20


title: 1001701101_O8


title: 1001701101_O5


title: 1001701605_E19


title: 1001701101_O17


title: 1001701605_E18


title: 1001701101_O4


title: 1001701101_O3


title: 1001701605_E17


title: 1001701101_O2


title: 1001701101_O16


title: 1001701605_E16


title: 1001701605_E15


title: 1001701605_E23


title: 1001701101_N22


title: 1001701101_N23


title: 1001701101_O1


title: 1001701101_N21


title: 1001701605_E10


title: 1001701101_N18


title: 1001701101_N17


title: 1001701605_E9


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title: 1001701101_N20


title: 1001701605_E8


title: 1001701605_E7


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title: 1001701605_E6


title: 1001701101_N15


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title: 1001701101_N13


title: 1001701605_E4


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title: 1001701101_N10


title: 1001701605_E1


title: 1001701101_N9


title: 1001701605_E12


title: 1001701605_E11


title: 1001701101_N19


title: 1001701605_D23


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title: 1001701101_N7


title: 1001701605_D22


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title: 1001701101_N6


title: 1001701605_D20


title: 1001701605_D19


title: 1001701101_N5


title: 1001701101_N4


title: 1001701605_D18


title: 1001701101_N3


title: 1001701605_D17


title: 1001701605_D16


title: 1001701101_N1


title: 1001701605_D15


title: 1001701101_M23


title: 1001701605_D14


title: 1001701605_D13


title: 1001701101_M22


title: 1001701101_M20


title: 1001701605_D12


title: 1001701101_M21


title: 1001701605_D11


title: 1001701605_D10


title: 1001701101_M18


title: 1001701605_D9


title: 1001701101_M19


title: 1001701605_D8


title: 1001701101_M17


title: 1001701605_D7


title: 1001701605_D6


title: 1001701605_D4


title: 1001701605_D5


title: 1001701605_D3


title: 1001701101_N2


title: 1001701605_D2


title: 1001701303_H23

value: dengue fever


title: 1001701303_H18


title: 1001701303_H19


title: 1001701303_H22


title: 1001701303_H21


title: 1001701303_H20


title: 1001701605_C23


title: 1001701303_H15


title: 1001701303_H17


title: 1001701303_H16


title: 1001701605_C22


title: 1001701303_H14


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title: 1001701605_C20


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title: 1001701605_C18


title: 1001701303_H11


title: 1001701303_H10


title: 1001701303_H9


title: 1001701605_C17


title: 1001701303_H8


title: 1001701303_H7


title: 1001701605_D1


title: 1001701605_C14


title: 1001701605_C15


title: 1001701303_H6


title: 1001701605_C11


title: 1001701303_H5


title: 1001701605_C10


title: 1001701605_C13


title: 1001701605_C12


title: 1001701605_C9


title: 1001701303_H2


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title: 1001701303_G5


title: 1001701303_G4


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title: 1001701303_G3


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title: 1001701605_B7


title: 1001701303_F23


title: 1001701605_B6


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title: 1001701303_F22


title: 1001701605_B4


title: 1001701303_F20


title: 1001701303_F21


title: 1001701303_F19


title: 1001701605_B3


title: 1001701303_F18


title: 1001701303_F17


title: 1001701605_B2


title: 1001701605_C7


title: 1001701303_F16


title: 1001701605_B1


title: 1001701605_A22


title: 1001701303_F14


title: 1001701605_A21


title: 1001701303_F13


title: 1001701605_A19


title: 1001701605_A20


title: 1001701303_G1


title: 1001701605_A18


title: 1001701303_F11


title: 1001701605_A17


title: 1001701605_A16


title: 1001701303_F8


title: 1001701303_F10


title: 1001701303_F9


title: 1001701605_A15


title: 1001701605_A14


title: 1001701605_A13


title: 1001701605_C5


title: 1001701303_F15


title: 1001701303_F7


title: 1001701303_F4


title: 1001701605_A23


title: 1001701605_A12


title: 1001701605_A10


title: 1001701303_F3


title: 1001701605_A11


title: 1001701605_A9


title: 1001701303_F1


title: 1001701605_A8


title: 1001701303_F12


title: 1001701605_A6


title: 1001701303_F2


title: 1001701605_A7

value: NKT cell


title: 1001701303_E21


title: 1001701605_A5


title: 1001701303_E23


title: 1001701303_F5


title: 1001701303_F6


title: 1001701605_A4


title: 1001701605_A3

value: pDC


title: 1001701303_E17


title: 1001701605_A2


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title: 1001701303_E16


title: 1001701605_A1


title: 1001701303_E15


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title: 1001701603_O10


title: 1001701303_D3


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title: mchon_2-5

city: Hangzhou

first: Yishan

last: Chen

address: #866 Yuhangtang Road

country: China

institute: Zhejiang University

data_processing:
Illumina Casava1.7 software used for basecalling.
alignment was conducted with Tophat
The final gene expression data was normalized using Cuffnorm and represented as counts
Genome_build: mm9
Supplementary_files_format_and_content: Csv file includes raw counts of each gene from each sample

organism: Mus musculus

source_name: mouse chondrocytes

growth_protocol: Before treatment, MEFs were cultured in 10% FBS+ H-DMEM at a confluency of 90%. Mchons were cultured in 10% FBS + DMEM/F12 a confluency of 80-90%

extract_protocol:
Trizol for RNAextraction,  reverse transcription for 1st cDNA strand, second strand kit for double strand DNA synthesis.
3' end enrichment with Illumina Nextera XT

treatment_protocol: We collected cells as follows: mouse chondrocytes, mouse embryonic fibroblasts(MEFs), MEFs treated by VCRTc for 3 days and 6 days, and MEFs treated by V, C, R, T, ce for 6 days, respectively.

tag: strain

value: limb cartilage

value: chondrocytes

tag: passages

tag: treatment

value: growth medium

tag: time


title: mchon_1-5


title: ce_3-5

source_name: mouse embryonic fibroblasts

value: embryonic fibroblasts

value: Celecoxib treatment / hypoxia


title: ce_2-5


title: 1001702204_N4

value: blood

value: monocyte


title: 1001701505_G15


title: 1001701505_G13


title: 1001702204_N5


title: 1001701505_G12


title: 1001701505_G14


title: ce_1-5


title: 1001701505_G16


title: 1001701505_G11


title: mchon_3-5


title: 1001702204_N3


title: 1001701505_G10


title: 1001701505_G9


title: T_2-5

value: TTNPB treatment / hypoxia


title: 1001701505_G8

value: F


title: 1001701505_G18


title: 1001702204_N23

value: B cell

value: severe dengue


title: 1001701505_G6


title: T_1-5


title: 1001702204_N22


title: 1001701505_G5

value: unknown


title: 1001701505_G4


title: 1001702204_N21


title: R_3-5

value: Repsox treatment / hypoxia


title: 1001701505_G3


title: 1001702204_N20


title: 1001701505_G1


title: 1001701505_F23


title: R_1-5


title: 1001701505_F22


title: 1001702204_N19


title: R_2-5


title: 1001701505_G2


title: C_3-5

value: CHIR-98016 treatment / hypoxia


title: 1001701505_F20

value: dengue fever


title: T_3-5


title: 1001702204_N18


title: 1001701505_G7

value: T cell


title: 1001701505_F18


title: C_2-5

value: CHIR-98015 treatment / hypoxia


title: 1001701505_F19


title: 1001701505_F17


title: C_1-5

value: CHIR-98014 treatment / hypoxia


title: 1001702204_N17


title: V_3-5

value: VPA treatment / hypoxia


title: 1001702204_N16


title: 1001702204_N15


title: V_2-5


title: 1001702204_N2


title: 1001701505_F13


title: 1001701505_F12


title: 1001701505_F14


title: 1001702204_N14


title: 6d-VCRTc_3-5

value: VCRTc treatment / hypoxia


title: V_1-5

value: embryonic fibroblasts


title: 1001701505_F9


title: 1001702204_N12


title: 1001701505_F10


title: 1001701505_F21


title: 1001701505_F7


title: 1001701505_F8


title: 6d-VCRTc_1-5


title: 1001701505_F4


title: 1001701505_F6


title: 6d-VCRTc_2-5


title: 1001701505_F16


title: 1001701505_F2


title: 1001702204_N1


title: 1001702204_N10


title: 1001701505_F3


title: 1001701505_F1


title: 1001701505_F11


title: 1001701505_E23


title: 1001702204_M9


title: 1001701505_E21


title: 1001702204_N13


title: 3d-VCRTc_1-5


title: 1001702204_M8


title: 1001701505_F5


title: 1001701505_F15


title: 1001701505_E18


title: 1001702204_N11


title: 1001701505_E19


title: MEF_2-5

value: growth medium


title: 3d-VCRTc_3-5


title: 1001701505_E16

value: blood


title: 1001701505_E15


title: MEF_1-5


title: MEF_3-5


title: 1001702204_M5


title: mchon_3-4

value: limb cartilage

value: chondrocytes


title: 1001702204_M4

value: F


title: 1001701505_E14


title: 1001701505_E13

value: monocyte


title: 3d-VCRTc_2-5


title: 1001701505_E22


title: mchon_2-4


title: 1001701505_E11


title: 1001701505_E20


title: mchon_1-4


title: 1001702204_M3

value: severe dengue


title: 1001702204_M7

value: unknown


title: 1001701505_E17


title: ce_2-4

value: Celecoxib treatment / hypoxia


title: 1001701505_E6


title: ce_3-4


title: 1001701505_E7


title: 1001702204_M22

value: B cell


title: 1001701505_E10

value: NK cell

value: dengue fever


title: 1001702204_M21


title: 1001701505_E4

value: T cell


title: 1001701505_E5


title: 1001701505_E3


title: ce_1-4


title: 1001701505_E12


title: 1001701505_E9


title: 1001701505_E1


title: 1001701505_E2


title: 1001702204_M2


title: T_3-4

value: TTNPB treatment / hypoxia


title: T_2-4


title: 1001701505_D22


title: 1001702204_M20


title: 1001702204_M23

value: pDC


title: 1001701505_D20


title: 1001701505_E8


title: 1001702204_M19


title: 1001701505_D23


title: T_1-4


title: 1001702204_M18


title: 1001701505_D19


title: R_3-4

value: Repsox treatment / hypoxia


title: R_2-4

value: embryonic fibroblasts


title: 1001701505_D17


title: 1001702204_M17


title: 1001701505_D18


title: 1001701505_D16


title: R_1-4


title: 1001701505_D15


title: 1001702204_M16


title: 1001702204_M15


title: 1001701505_D13


title: 1001701505_D14


title: 1001702204_M14


title: 1001701505_D12


title: C_2-4

value: CHIR-98015 treatment / hypoxia


title: 1001701505_D10

value: blood


title: 1001702204_M13


title: 1001701505_D11


title: 1001701505_D9


title: 1001702204_M12


title: 1001701505_D7


title: V_3-4

value: VPA treatment / hypoxia


title: 1001702204_M11


title: C_1-4

value: CHIR-98014 treatment / hypoxia


title: 1001701505_D6

value: F


title: 1001701505_D5


title: V_2-4


title: 1001701505_D4


title: 1001702204_M10


title: C_3-4

value: CHIR-98016 treatment / hypoxia


title: V_1-4


title: 1001702204_M1

value: severe dengue


title: 1001701505_D2


title: 1001701505_D1

value: unknown


title: 1001701505_D3


title: 1001701505_C23

value: monocyte


title: 6d-VCRTc_3-4

value: VCRTc treatment / hypoxia


title: 1001701505_C22


title: 6d-VCRTc_2-4


title: 1001701505_C21


title: 1001702204_L8


title: 1001702204_L9


title: 1001701505_C20


title: 1001701505_C19


title: 6d-VCRTc_1-4


title: 1001701505_D8


title: 1001701505_C17


title: 1001701505_C18


title: 3d-VCRTc_2-4


title: 1001701505_C16


title: 1001702204_L6


title: 3d-VCRTc_3-4


title: 1001702204_L7


title: 1001702204_L5


title: 1001701505_C14


title: 3d-VCRTc_1-4


title: 1001701505_C13


title: 1001701505_C15


title: 1001701505_C11


title: 1001702204_L4


title: 1001702204_L3


title: MEF_3-4

value: growth medium


title: MEF_2-4


title: 1001701505_C8

value: B cell

value: dengue fever


title: 1001701505_C9


title: 1001701505_C10

value: T cell


title: 1001701505_C7


title: MEF_1-4


title: 1001701505_C5


title: mchon_3-3

value: limb cartilage

value: chondrocytes


title: 1001702204_L22


title: 1001702204_L21


title: mchon_2-3


title: 1001701505_C2


title: 1001701505_C3


title: 1001702204_L20


title: 1001701505_C4


title: 1001702204_L2


title: 1001701505_C1


title: mchon_1-3


title: 1001701505_C12


title: 1001701505_B23


title: ce_3-3

value: embryonic fibroblasts

value: Celecoxib treatment / hypoxia


title: 1001701505_B22

value: blood


title: 1001702204_L19


title: ce_2-3


title: ce_1-3


title: 1001701505_B20


title: 1001701505_B19


title: 1001701505_C6


title: 1001701505_B18


title: 1001702204_L17


title: 1001701505_B17


title: 1001702204_L16


title: T_3-3

value: TTNPB treatment / hypoxia


title: 1001701505_B16


title: T_2-3


title: 1001701505_B15


title: 1001701505_B14


title: T_1-3


title: 1001702204_L15


title: 1001702204_L14


title: 1001701505_B13


title: 1001701505_B12


title: 1001701505_B11


title: R_3-3

value: Repsox treatment / hypoxia


title: 1001701505_B21

value: F


title: 1001702204_L13


title: R_2-3


title: 1001701505_B10


title: 1001702204_L18


title: 1001701505_B8


title: 1001701505_B9


title: 1001701505_B6


title: 1001702204_L12


title: 1001701505_B5


title: 1001702204_M6


title: R_1-3


title: C_3-3

value: CHIR-98016 treatment / hypoxia


title: 1001702204_L11

value: NK cell

value: severe dengue


title: 1001702204_L10

value: unknown


title: C_2-3

value: CHIR-98015 treatment / hypoxia


title: 1001701505_B4


title: 1001701505_B3


title: 1001701505_B2

value: NKT cell


title: C_1-3

value: CHIR-98014 treatment / hypoxia


title: 1001702204_K9


title: 1001702204_L1


title: 1001702204_K8


title: 1001701505_A20

value: dengue fever


title: V_3-3

value: VPA treatment / hypoxia


title: V_2-3


title: 1001701505_B7


title: 1001701505_A21

value: monocyte


title: 1001701505_A22


title: 1001702204_K7


title: 1001701505_B1


title: 1001701505_A19


title: 1001701505_A18


title: 1001701505_A17


title: V_1-3


title: 1001701505_A16


title: 1001702204_K5

value: B cell


title: 1001701505_A14


title: 6d-VCRTc_2-3

value: embryonic fibroblasts

value: VCRTc treatment / hypoxia


title: 6d-VCRTc_1-3


title: 1001701505_A12

value: blood


title: 1001701505_A13


title: 1001702204_K4


title: 1001701505_A23


title: 1001701505_A11


title: 1001702204_K3


title: 1001701505_A10

value: T cell


title: 1001702204_K23


title: 1001701505_A9


title: 3d-VCRTc_2-3


title: 1001701505_A8


title: 3d-VCRTc_3-3


title: 1001701505_A7


title: 1001702204_K22


title: 1001701505_A5


title: 1001701505_D21


title: 3d-VCRTc_1-3


title: MEF_3-3

value: growth medium


title: 1001701505_A15

value: F


title: 1001702204_K6


title: 1001702204_K21


title: 1001701505_A6


title: 6d-VCRTc_3-3


title: 1001701505_A3


title: 1001701505_A4


title: MEF_2-3


title: 1001702204_K2


title: MEF_1-3


title: 1001701503_P23


title: 1001701505_A1


title: 1001701503_P22


title: 1001702204_K19


title: 1001701503_P21


title: 1001701503_P20


title: mchon_3-2

value: limb cartilage

value: chondrocytes


title: 1001702204_K18

value: severe dengue


title: 1001701503_P19


title: 1001701503_P16

value: unknown


title: mchon_1-2


title: 1001702204_K17


title: 1001701503_P18


title: 1001702204_K16


title: 1001701503_P15

value: NK cell


title: 1001701503_P17


title: 1001701505_A2


title: ce_2-2

value: Celecoxib treatment / hypoxia


title: ce_3-2


title: 1001702204_K20


title: 1001701503_P13


title: 1001701503_P12


title: 1001701503_P14


title: 1001702204_K14


title: 1001702204_K15


title: ce_1-2


title: 1001701503_P11


title: 1001702204_K13


title: 1001701503_P10


title: T_3-2

value: TTNPB treatment / hypoxia


title: 1001701503_P9

value: dengue fever


title: 1001701503_P8


title: mchon_2-2


title: 1001702204_K12


title: 1001701503_P7


title: 1001701503_P6


title: 1001702204_K11


title: 1001701503_P3


title: 1001701503_P5


title: 1001701503_P4


title: 1001702204_K10


title: R_3-2

value: Repsox treatment / hypoxia


title: R_2-2


title: 1001702204_K1


title: 1001701503_P1


title: 1001702204_J9


title: 1001701503_O22

value: monocyte


title: 1001701503_O21


title: 1001702204_J8

value: B cell


title: 1001701503_O23


title: R_1-2

value: embryonic fibroblasts


title: C_3-2

value: CHIR-98016 treatment / hypoxia


title: 1001702204_J7

value: blood


title: 1001701503_O18


title: C_2-2

value: CHIR-98015 treatment / hypoxia


title: T_2-2


title: 1001701503_O17


title: 1001702204_J6


title: 1001701503_O16


title: T_1-2


title: 1001701503_O15


title: 1001701503_P2


title: 1001702204_J5


title: 1001701503_O14


title: V_3-2

value: VPA treatment / hypoxia


title: 1001701503_O13

value: F


title: V_2-2


title: 1001701503_O11


title: 1001702204_J3


title: 1001702204_J4


title: 1001701503_O10


title: V_1-2


title: 1001701503_O12


title: 1001701503_O9


title: 1001701503_O19


title: 6d-VCRTc_3-2

value: VCRTc treatment / hypoxia


title: 1001701503_O20


title: 1001701503_O6


title: 1001701503_O8


title: C_1-2

value: CHIR-98014 treatment / hypoxia


title: 1001702204_J21

value: severe dengue


title: 1001701503_O5


title: 1001701503_O4


title: 1001701503_O7


title: 1001701503_O3


title: 1001702204_J20

value: unknown


title: 3d-VCRTc_3-2


title: 1001702204_J2


title: 1001702204_J23


title: 1001701503_O2


title: 1001701503_N22


title: 1001701503_O1


title: 1001701503_N23


title: 1001702204_J19


title: 3d-VCRTc_2-2


title: 3d-VCRTc_1-2


title: 1001701503_N21


title: MEF_3-2

value: growth medium


title: 1001702204_J22


title: 1001701503_N19


title: 1001701503_N18


title: 6d-VCRTc_2-2


title: 1001702204_J17


title: MEF_2-2


title: 6d-VCRTc_1-2


title: 1001701503_N16


title: 1001701503_N17


title: MEF_1-2


title: 1001701503_N15


title: 1001701503_N14


title: 1001702204_J15


title: 1001701503_N13


title: mchon_3-1

value: limb cartilage

value: chondrocytes


title: 1001702204_J18


title: 1001701503_N20

value: dengue fever


title: 1001701503_N12


title: mchon_2-1


title: 1001701503_N11


title: 1001702204_J14


title: mchon_1-1


title: 1001701503_N9


title: 1001702204_J13


title: 1001701503_N8


title: 1001701503_N6


title: ce_3-1

value: Celecoxib treatment / hypoxia


title: ce_2-1


title: 1001701503_N7


title: 1001701503_N5


title: 1001701503_N4


title: 1001702204_J11


title: 1001702204_J12


title: 1001702204_J16


title: 1001702204_J10

value: pDC


title: 1001701503_N3

value: B cell


title: ce_1-1

value: embryonic fibroblasts


title: 1001701503_N2


title: 1001701503_N1


title: 1001702204_J1


title: 1001701503_M22


title: T_3-1

value: TTNPB treatment / hypoxia


title: 1001701503_M21

value: blood

value: monocyte


title: 1001702204_I9


title: 1001701503_N10


title: T_1-1


title: T_2-1


title: 1001701503_M20


title: 1001702204_I8


title: 1001701503_M19


title: 1001702204_I7


title: 1001701503_M17


title: 1001701503_M16


title: 1001701503_M18


title: R_3-1

value: Repsox treatment / hypoxia


title: 1001702204_I6

value: F


title: 1001701503_M14


title: 1001702204_L23


title: R_2-1


title: 1001701503_M15


title: 1001702204_I4


title: 1001701503_M13


title: R_1-1


title: 1001701503_M23


title: 1001702204_I5


title: 1001701503_M11


title: 1001701503_M10


title: 1001701503_M12

value: NK cell


title: 1001701503_M9


title: C_3-1

value: CHIR-98016 treatment / hypoxia


title: C_2-1

value: CHIR-98015 treatment / hypoxia


title: C_1-1

value: CHIR-98014 treatment / hypoxia


title: 1001701503_M7


title: 1001702204_I22

value: unknown

value: severe dengue


title: 1001702204_I23


title: V_3-1

value: VPA treatment / hypoxia


title: 1001701503_M8

value: dengue fever


title: 1001701503_M6


title: 1001701503_M3


title: 1001702204_I21


title: V_2-1


title: 1001701503_M4


title: 1001701503_M5


title: V_1-1


title: 1001701503_L23


title: 1001701503_M2


title: 1001702204_I2


title: 1001702204_I20


title: 1001701503_M1


title: 1001701503_L22


title: 1001702204_I19


title: 6d-VCRTc_3-1

value: VCRTc treatment / hypoxia


title: 1001701503_L21


title: 6d-VCRTc_2-1


title: 1001702204_I3


title: 1001702204_I18


title: 1001701503_L20


title: 6d-VCRTc_1-1


title: 1001701503_L19


title: 1001702204_I17


title: 1001701503_L18


title: 1001701503_L17


title: 1001701503_L16


title: 1001702204_I16


title: 1001701503_L15


title: 1001701503_L14


title: 3d-VCRTc_1-1


title: 3d-VCRTc_3-1


title: 1001701503_L13


title: 1001701503_L11


title: 3d-VCRTc_2-1


title: 1001702204_I13


title: 1001701503_L9


title: 1001702204_I14

value: cDC


title: 1001701503_L10

value: B cell


title: MEF_2-1

value: embryonic fibroblasts

value: growth medium


title: MEF_3-1


title: 1001702204_I12

value: blood


title: 1001701503_L8


title: 1001701503_L7


title: 1001701503_L6


title: 1001702204_I11

value: pDC


title: MEF_1-1


title: 1001701503_L4


title: 1001701503_L5


title: 1001701503_L3


title: cichon_310

source_name: chemical-induce chondrocytes

extract_protocol: Single cells were lysated, preamplified and library prepared according C1-HT IFC protocol of Fluidigm Corporation.

treatment_protocol: Ci-Ics: MEFs treated by chemical cocktails (VCRTs) under hypoxia condition (5% O2) for 6 days. Ci-chons: chondrogensis induction of ci-Ics for 28 days.

value: chemical-induce chondrocytes

value: chondrogenic induction of chemical-induced intermediate cells


title: cichon_311


title: 1001701503_L2

value: F


title: 1001702204_I10


title: 1001702204_I1


title: cichon_309


title: 1001701503_L12

value: monocyte


title: 1001701503_L1


title: 1001702204_H9


title: 1001701503_K23


title: 1001702204_I15


title: cichon_308


title: 1001702204_H8


title: 1001701503_K19


title: 1001701503_K22


title: cichon_306


title: 1001702204_H7


title: 1001701503_K20


title: 1001701503_K21


title: 1001702204_H6


title: 1001701503_K16


title: cichon_305


title: 1001701503_K18


title: 1001701503_K15


title: 1001702204_H5


title: 1001701503_K14

value: NK cell


title: cichon_304


title: 1001702204_H4


title: cichon_303


title: 1001701503_K13


title: 1001701503_K12


title: cichon_302


title: 1001701503_K11


title: 1001701503_K10


title: cichon_301


title: 1001702204_H23


title: 1001702204_H3


title: cichon_307


title: 1001701503_K8


title: 1001701503_K7


title: 1001701503_K17


title: 1001701503_K5


title: cichon_300


title: 1001702204_H21


title: cichon_299


title: 1001701503_K3


title: 1001701503_K6


title: 1001701503_K4

value: T cell


title: cichon_298


title: 1001702204_H20

value: unknown


title: 1001701503_K2


title: 1001701503_K1


title: 1001702204_H2

value: severe dengue


title: 1001701503_J23


title: cichon_297


title: 1001701503_J21


title: 1001702204_H19


title: 1001701503_K9


title: cichon_296


title: 1001701503_J20


title: 1001702204_H18


title: 1001701503_J19


title: 1001701503_J18


title: 1001702204_H17


title: cichon_295


title: 1001702204_H22


title: cichon_294


title: cichon_293


title: 1001701503_J14


title: 1001701503_J17


title: 1001702204_H16


title: 1001701503_J12


title: 1001701503_J13


title: 1001701503_J15


title: 1001701503_J11


title: cichon_291


title: 1001701503_J10


title: 1001701503_J22


title: 1001702204_H13


title: 1001702204_H14


title: 1001701503_J9


title: cichon_290


title: 1001701503_J8


title: 1001701503_J7


title: 1001702204_H12


title: cichon_289


title: 1001701503_J6


title: 1001702204_H11


title: 1001701503_J4


title: cichon_288


title: 1001702204_H10


title: 1001701503_J16


title: 1001701503_J3


title: cichon_292


title: 1001702204_H15


title: 1001702204_H1


title: 1001701503_J2


title: cichon_287


title: 1001701503_I23


title: 1001701503_J1


title: 1001702204_G9


title: cichon_285


title: cichon_286


title: 1001702204_G8


title: 1001701503_I22


title: 1001701503_I19


title: 1001701503_I20


title: cichon_284


title: 1001702204_G7


title: 1001701503_I18


title: cichon_283


title: 1001701503_J5


title: 1001701503_I17


title: 1001702204_G6


title: cichon_282


title: 1001701503_I15


title: cichon_281


title: 1001702204_G5


title: 1001701503_I14


title: 1001701503_I13


title: cichon_280


title: 1001701503_I12


title: 1001702204_G4


title: cichon_279


title: 1001701503_I10


title: 1001701503_I9


title: 1001701503_I11


title: 1001702204_G23


title: 1001701503_I21


title: cichon_278


title: 1001702204_G3


title: 1001702204_G22


title: cichon_277


title: 1001701503_I8


title: 1001701503_I6


title: 1001701503_I5


title: 1001701503_I16


title: cichon_276


title: 1001701503_I7


title: 1001701503_I3


title: cichon_275


title: 1001702204_G20


title: 1001701503_I1


title: 1001701503_I2


title: 1001701503_H23


title: 1001701503_H22


title: 1001702204_G19


title: 1001701503_H21


title: cichon_273


title: 1001702204_G2


title: cichon_272


title: 1001701503_H18


title: 1001702204_G17


title: cichon_271


title: 1001701503_H19


title: 1001701503_H17


title: 1001701503_H16


title: 1001701503_I4


title: 1001702204_G16


title: cichon_270


title: 1001701503_H15


title: 1001702204_G15


title: 1001701503_H13


title: 1001702204_G21


title: 1001701503_H14


title: 1001701503_H12


title: cichon_269


title: cichon_274


title: 1001702204_G14


title: 1001701503_H10


title: 1001702204_G13


title: 1001701503_H11


title: 1001701503_H9


title: 1001701503_H8


title: 1001702204_G18


title: 1001701503_H20


title: cichon_267


title: 1001701503_H7


title: 1001702204_G12


title: 1001702204_G11


title: cichon_265


title: 1001701503_H6


title: 1001701503_H4


title: 1001701503_H3


title: cichon_264


title: 1001701503_H2


title: 1001701503_H1


title: 1001701503_G23


title: 1001701503_G22


title: 1001702204_F9


title: cichon_268


title: 1001702204_F8


title: 1001701503_G21


title: 1001701503_G20


title: 1001701503_G19


title: 1001702204_F7


title: cichon_260


title: 1001701503_G17


title: cichon_262


title: 1001702204_F6


title: 1001701503_G16


title: cichon_266


title: cichon_259


title: 1001701503_G18


title: 1001701503_H5


title: 1001701503_G15


title: 1001702204_F5


title: cichon_258


title: 1001702204_G1


title: 1001702204_G10


title: 1001702204_F4


title: cichon_263


title: 1001701503_G13


title: 1001701503_G11


title: 1001701503_G12


title: 1001702204_F3


title: 1001701503_G10


title: cichon_256


title: cichon_261


title: 1001702204_F23


title: cichon_257


title: 1001701503_G9


title: 1001701503_G7


title: cichon_255


title: cichon_254


title: 1001702204_F22


title: 1001701503_G6


title: 1001701503_G5


title: 1001701503_G4


title: 1001702204_F21


title: cichon_253


title: 1001701503_G14


title: 1001702204_F20


title: 1001701503_G3


title: 1001701503_G2


title: 1001702204_F2


title: 1001701503_G1


title: cichon_252


title: 1001701503_F23


title: 1001701503_F22


title: cichon_251


title: 1001702204_F19


title: 1001701503_F21


title: 1001701503_F20


title: 1001701503_F19


title: 1001701503_G8


title: cichon_249


title: 1001701503_F18


title: 1001702204_F17


title: 1001701503_F17


title: cichon_248


title: 1001701503_F15


title: 1001702204_F16


title: 1001701503_F14


title: 1001702204_F15


title: cichon_247


title: 1001701503_F16


title: 1001702204_F14


title: 1001701503_F13


title: 1001701503_F9


title: 1001701503_F10


title: 1001702204_F13


title: 1001701503_F11


title: cichon_246


title: 1001701503_F12


title: cichon_244


title: cichon_250


title: 1001702204_F18


title: cichon_245


title: 1001702204_F12


title: 1001701503_F8


title: 1001701503_F7


title: cichon_243


title: 1001702204_F11


title: 1001701503_F5


title: 1001701503_F6


title: 1001702204_F10


title: cichon_242


title: 1001701503_F3


title: 1001701503_F4


title: 1001701503_F2


title: cichon_241


title: 1001701503_F1


title: 1001701503_E23


title: 1001702204_E9


title: cichon_239


title: 1001701503_E22


title: 1001701503_E20


title: cichon_237


title: 1001702204_E8


title: cichon_240


title: 1001702204_E7


title: 1001701503_E17


title: 1001701503_E16


title: 1001701503_E21


title: cichon_236


title: 1001702204_E6


title: 1001701503_E15


title: cichon_238


title: cichon_235


title: 1001702204_E5


title: 1001701503_E13


title: 1001701503_E18


title: 1001701503_E14


title: 1001701503_E12


title: 1001702204_F1


title: 1001702204_E4


title: 1001701503_E11


title: 1001701503_E10


title: cichon_233


title: 1001702204_E3


title: 1001701503_E9


title: 1001702204_E23


title: cichon_232


title: 1001701503_E6


title: 1001702204_E21


title: 1001701503_E4


title: 1001701503_E5


title: 1001702204_E22


title: cichon_231


title: 1001701503_E7


title: 1001701503_E2


title: 1001702204_E20


title: cichon_230


title: 1001701503_E1


title: cichon_228


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title: cichon_34


title: 1001701501_D6


title: cichon_36


title: cichon_35


title: 1001702203_L9


title: 1001701501_D2


title: 1001701501_D4


title: 1001701501_D3


title: cichon_33


title: 1001701501_C23


title: cichon_32


title: 1001701501_C22


title: 1001701501_C21


title: cichon_31


title: cichon_37


title: 1001701501_C18


title: cichon_30


title: 1001702203_L6


title: 1001701501_C19


title: 1001701501_C20


title: 1001702203_L5


title: cichon_29


title: cichon_28


title: 1001701501_C14


title: 1001701501_C16


title: 1001702203_L3


title: 1001702203_L4


title: 1001701501_C12


title: cichon_27


title: 1001701501_C10


title: 1001701501_C11


title: 1001702203_L8


title: 1001702203_L23


title: cichon_26


title: 1001702203_L7


title: 1001701501_C8


title: 1001702203_L22


title: cichon_25


title: 1001701501_C17


title: 1001702203_L21


title: cichon_24


title: 1001701501_C5


title: 1001701501_C15


title: 1001702203_L20


title: 1001701501_C4


title: cichon_23


title: 1001701501_C13


title: 1001701501_C2


title: cichon_22


title: 1001702203_L19


title: 1001701501_B23


title: 1001701501_C1


title: cichon_21


title: 1001701501_B22


title: 1001701501_B21


title: cichon_20


title: 1001701501_C9


title: 1001702203_L17


title: 1001702203_L18


title: 1001701501_B19


title: 1001701501_D1


title: cichon_19


title: 1001701501_C7


title: 1001701501_B20


title: 1001701501_C6


title: 1001701501_B17


title: cichon_18


title: 1001702203_L15


title: 1001702203_L16


title: 1001701501_B16


title: 1001701501_B15


title: cichon_17


title: 1001701501_C3


title: 1001701501_B14


title: 1001702203_L14


title: 1001702203_L2


title: 1001701501_B13


title: 1001702203_L13


title: 1001701501_B12


title: 1001701501_B10


title: cichon_15


title: 1001702203_L12


title: cichon_14


title: 1001701501_B8


title: 1001701501_B18


title: 1001702203_L11


title: 1001701501_B7


title: cichon_13


title: 1001701501_B6


title: 1001701501_B5


title: 1001702203_L10


title: cichon_12


title: cichon_11


title: 1001701501_B4


title: 1001702203_L1


title: 1001701501_B2


title: cichon_16


title: 1001701501_B3


title: 1001701501_B1


title: cichon_10


title: 1001702203_K9


title: 1001701501_A23


title: cichon_9


title: 1001702203_K8


title: 1001701501_A22


title: 1001701501_B11


title: 1001701501_A20


title: 1001701501_B9


title: 1001702203_K6


title: 1001702203_K7


title: 1001701501_A19


title: 1001701501_A17


title: 1001701501_A18


title: cichon_7


title: 1001701501_A16


title: cichon_6


title: 1001701501_A14


title: 1001701501_A15


title: cichon_5


title: 1001702203_K4


title: 1001701501_A13


title: cichon_4


title: 1001702203_K3


title: 1001701501_A11


title: 1001702203_K23


title: 1001701501_A10


title: 1001701501_A21


title: 1001701501_A9


title: cichon_8


title: cichon_2


title: 1001701501_A8


title: 1001701501_A7


title: 1001702203_K21


title: cichon_1


title: 1001701501_A5


title: 1001702203_K22


title: 1001702203_K20


title: 1001701501_A6


title: 1001701501_A4


title: IC_577

source_name: chemical-induced intermediate cells

value: chemical-induced intermediate cells

value: chemical cocktail VCRTc / hypoxia


title: 1001701501_A2


title: 1001702203_K5


title: 1001702203_K2


title: 1001701501_A12


title: 1001702203_K19


title: 1001701501_A3


title: 1001701501_A1


title: cichon_3


title: IC_574


title: IC_575


title: 1001701405_P22


title: 1001702203_K18


title: 1001701405_P17


title: 1001701405_P19


title: 1001701405_P21


title: 1001701405_P23


title: 1001701405_P16


title: 1001702203_K14


title: 1001701405_P14


title: 1001701405_P20


title: 1001701405_P15


title: 1001702203_K16


title: IC_573


title: 1001701405_P11


title: 1001701405_P18


title: IC_570


title: 1001702203_K17


title: IC_569


title: 1001702203_K15


title: IC_571


title: 1001702203_K12


title: 1001701405_P10


title: 1001701405_P8


title: 1001701405_P13


title: 1001701405_P7


title: 1001701405_P12


title: 1001702203_K10


title: IC_566


title: 1001702203_K11


title: 1001701405_P9


title: IC_567


title: 1001701405_P4

value: B cell


title: 1001701405_P5


title: 1001701405_P3


title: IC_568


title: 1001702203_J8


title: 1001702203_K1


title: 1001701405_O22


title: IC_576


title: 1001702203_K13


title: 1001701405_P2


title: IC_564


title: 1001701405_P1


title: 1001701405_O23


title: 1001701405_O19


title: 1001702203_J9


title: IC_562


title: IC_561


title: 1001701405_O21


title: 1001701405_O17


title: IC_560


title: 1001701405_O16


title: IC_563


title: 1001702203_J7


title: 1001701405_P6


title: 1001702203_J6


title: 1001701405_O20


title: 1001701405_O18


title: IC_565


title: 1001702203_J5


title: 1001702203_J4


title: IC_572


title: 1001701405_O13


title: IC_559


title: 1001702203_J3


title: IC_557


title: 1001701405_O14


title: 1001701405_O8


title: IC_558


title: 1001701405_O12


title: 1001701405_O11


title: 1001702203_J23


title: 1001701405_O10


title: 1001701405_O7


title: IC_556


title: 1001702203_J22


title: IC_555


title: 1001701405_O15


title: 1001701405_O6


title: IC_554


title: 1001702203_J20


title: 1001702203_J21


title: 1001701405_O4


title: 1001701405_O5


title: 1001702203_J2


title: 1001701405_O1


title: 1001701405_O2


title: 1001702203_J19


title: 1001701405_N23


title: IC_553


title: 1001701405_O9


title: 1001701405_N22


title: 1001702203_J18


title: IC_552


title: 1001701405_N21


title: 1001701405_N20


title: IC_551


title: 1001702203_J17


title: 1001701405_N18


title: 1001701405_N19


title: IC_550


title: IC_549


title: 1001702203_J16


title: 1001701405_O3


title: IC_548


title: 1001702203_J15


title: 1001702203_J14


title: 1001701405_N14


title: 1001701405_N16


title: 1001701405_N12


title: 1001701405_N13


title: 1001702203_J13


title: 1001701405_N11


title: 1001701405_N15


title: IC_547


title: IC_546


title: 1001702203_J12


title: 1001701405_N10


title: 1001701405_N8


title: 1001702203_J11


title: 1001701405_N7


title: 1001701405_N9


title: IC_545


title: 1001701405_N6


title: IC_544


title: 1001702203_J10


title: 1001701405_N5


title: 1001701405_N4


title: IC_543


title: 1001701405_N3


title: 1001702203_J1


title: IC_542


title: 1001702203_I9


title: 1001701405_N2


title: 1001701405_M22


title: 1001701405_N17


title: 1001702203_I8


title: 1001701405_N1


title: 1001701405_M17


title: 1001702203_I7


title: 1001701405_M23


title: IC_540


title: 1001701405_M21


title: 1001701405_M20


title: 1001701405_M16


title: 1001701405_M15


title: IC_537


title: 1001702203_I6


title: 1001702203_I3


title: IC_536


title: IC_538


title: 1001701405_M13


title: 1001702203_I5


title: IC_541


title: 1001702203_I4


title: 1001701405_M10


title: 1001701405_M11


title: IC_535


title: IC_539


title: 1001702203_I23


title: 1001701405_M14


title: IC_534


title: 1001701405_M19


title: 1001701405_M9


title: 1001702203_I22


title: IC_533


title: 1001701405_M8


title: 1001701405_M7


title: 1001702203_I20


title: IC_532


title: 1001701405_M6


title: 1001702203_I21


title: 1001701405_M5


title: IC_531


title: 1001701405_M4


title: 1001701405_M18


title: 1001701405_M12


title: IC_530


title: 1001701405_L23


title: 1001701405_M2


title: 1001702203_I19


title: 1001701405_L21


title: IC_529


title: 1001702203_I2


title: 1001701405_L19


title: 1001702203_I17


title: 1001702203_I18


title: IC_527


title: 1001701405_L22


title: IC_528


title: 1001701405_L18


title: IC_526


title: 1001701405_L17


title: 1001701405_L16


title: 1001702203_I15


title: 1001701405_L15


title: 1001701405_M3


title: 1001702203_I14


title: 1001701405_L14


title: 1001701405_M1


title: 1001701405_L13


title: IC_524


title: 1001701405_L12


title: 1001701405_L11


title: 1001702203_I13


title: IC_523


title: 1001701405_L20


title: IC_522


title: 1001701405_L10


title: 1001701405_L7


title: 1001702203_I11


title: 1001701405_L9


title: 1001701405_L4


title: 1001702203_I1


title: IC_521


title: 1001701405_L5


title: 1001701405_L3


title: IC_525


title: 1001702203_I12


title: IC_519


title: 1001702203_I16


title: 1001701405_L6


title: IC_518


title: 1001702203_I10


title: 1001702203_H8


title: 1001701405_K23


title: 1001701405_L2


title: 1001701405_L1


title: 1001702203_H9


title: IC_520


title: 1001701405_K22


title: 1001701405_L8


title: 1001701405_K20


title: 1001702203_H6


title: 1001701405_K21


title: 1001701405_K19


title: 1001702203_H7


title: IC_517


title: IC_516


title: IC_513


title: 1001701405_K14


title: IC_515


title: 1001701405_K15


title: 1001702203_H3


title: 1001701405_K13


title: IC_512


title: 1001701405_K12


title: 1001701405_K9


title: 1001701405_K11


title: 1001702203_H23


title: 1001702203_H22


title: 1001701405_K18


title: 1001701405_K10


title: 1001701405_K17


title: 1001701405_K8


title: IC_514


title: 1001701405_K7


title: 1001702203_H5


title: IC_510


title: 1001702203_H4


title: IC_509


title: 1001701405_K16


title: 1001702203_H21


title: 1001702203_H20


title: IC_508


title: 1001701405_K5


title: 1001702203_H2


title: IC_511


title: IC_507


title: 1001701405_K3


title: 1001701405_K1


title: 1001702203_H19


title: 1001701405_K2


title: IC_506


title: 1001701405_J23


title: 1001701405_J21


title: IC_504


title: 1001702203_H17


title: 1001701405_K6


title: 1001702203_H18


title: IC_505


title: 1001701405_J22


title: 1001701405_J19


title: 1001701405_J20


title: 1001701405_J18


title: 1001701405_K4


title: 1001702203_H16


title: 1001701405_J17


title: 1001701405_J16


title: 1001702203_H15


title: 1001701405_J15


title: 1001702203_H14


title: IC_501


title: IC_500


title: 1001701405_J12


title: 1001701405_J10


title: IC_502


title: 1001702203_H13


title: 1001701405_J14


title: 1001701405_J9


title: IC_503


title: 1001702203_H10


title: IC_496


title: 1001701405_J5


title: 1001701405_J4


title: 1001701405_J7


title: 1001701405_J6


title: 1001701405_J2


title: 1001702203_H11


title: IC_497


title: 1001702203_H1


title: IC_499


title: IC_498


title: 1001701405_J8


title: 1001701405_J3


title: 1001702203_G9


title: 1001701405_J1


title: 1001701405_J11


title: 1001701405_J13


title: 1001702203_H12


title: 1001701405_I23


title: 1001702203_G8


title: IC_494


title: 1001701405_I22


title: 1001702203_G7


title: 1001701405_I21


title: IC_493


title: 1001701405_I20


title: IC_495


title: 1001701405_I19


title: 1001702203_G6


title: 1001701405_I18


title: 1001701405_I15


title: IC_492