title: RHH2518 (scRNA-seq)

description: Resistant


title: RHH2519 (scRNA-seq)

status: Public on Nov 22 2018

type: SRA

city: Singapore

first: Yiqun Elaine

last: Cao

address: 8 College Road

country: Singapore

institute: Duke-NUS Medical School

description: Resistant

library_source: transcriptomic

data_processing:
Basecalls performed using gis-rpd pipelines/bcl2fastq/ https://github.com/gis-rpd/pipelines/tree/master/bcl2fastq
Single-cell RNA-seq reads were aligned to the hg19 genome assembly
Data were filtered using the RaceID algoritham https://github.com/dgrun/RaceID
Genome_build: hg19
Supplementary_files_format_and_content: good_Data_TPM.txt -- Raw TPM values of 1302 cells for downstream analysis
Supplementary_files_format_and_content: good_Data_cellinfo.txt -- Detailed information of 1302 cells for downstream analysis

molecule: total RNA

organism: Homo sapiens

growth_protocol: Tumors were minced prior to enzymatic dissociation using 4 mg/ml Collagenase type IV (Thermo Fisher, cat. no. 17104019) in DMEM/F12, at 37 °C for 2 hours. Cells were washed using cyclical treatment of pelleting and resuspension in phosphate buffered saline (Thermo Fisher, cat. no 14190235) for 3 cycles. The final cell suspensions were strained through 70 µm cell strainers (Falcon, cat. no. 352350), prior to pelleting and resuspension in RPMI (Thermo Fisher, cat. no 61870036), supplemented with 10% fetal bovine serum (Biowest, cat. no S181B), and 1% penicillin-streptomycin (Thermo Fisher, cat. no. 15140122). Cells were kept in a humidified atmosphere of 5% CO2 at 37°C. Cell line identity was authenticated by comparing the short tandem repeat (STR) profile (Indexx BioResearch) of each cell line to its original tumor.

extract_protocol:
The C1 Single-Cell Auto Prep IFC (Fluidigm) system was employed for single-cell RNA-seq. Single cells were captured, followed by reverse transcription and cDNA pre-amplification in the C1-Chips using the SMARTer PCR cDNA Synthesis kit (Clontech) and the Advantage 2 PCR kit (Clontech).
The mRNA and cDNA was harvested in C1 system followed by barcoding in 96 well plate. We employed Nextra XT Library Prep kit (Illumina) for library tegmentation. The tegmented single-cell libraries were amplified by 12-14 round of PCR cycle.

treatment_protocol: Drug resistant cells were maintained in cisplatin

tag: disease state

value: oral squamous cell carcinoma (OSCC)

tag: cell type

value: Primary

tag: passages

tag: response to cisplatin

value: Resistant


title: RHH2516 (scRNA-seq)

description: Resistant


title: RHH2517 (scRNA-seq)

description: Resistant


title: RHH2515 (scRNA-seq)

description: Resistant


title: RHH2510 (scRNA-seq)

description: Resistant


title: RHH2514 (scRNA-seq)

description: Resistant


title: RHH2511 (scRNA-seq)

description: Resistant


title: RHH2508 (scRNA-seq)

description: Resistant


title: RHH2509 (scRNA-seq)

description: Resistant


title: RHH2506 (scRNA-seq)

description: Resistant


title: RHH2512 (scRNA-seq)

description: Resistant


title: RHH2513 (scRNA-seq)

description: Resistant


title: RHH2503 (scRNA-seq)

description: Resistant


title: RHH2507 (scRNA-seq)

description: Resistant


title: RHH2502 (scRNA-seq)

description: Resistant


title: RHH2500 (scRNA-seq)

description: Resistant


title: RHH2504 (scRNA-seq)

description: Resistant


title: RHH2501 (scRNA-seq)

description: Resistant


title: RHH2505 (scRNA-seq)

description: Resistant


title: RHH2499 (scRNA-seq)

description: Resistant


title: RHH2520 (scRNA-seq)

description: Resistant


title: RHH2498 (scRNA-seq)

description: Resistant


title: RHH2496 (scRNA-seq)

description: Resistant


title: RHH2495 (scRNA-seq)

description: Resistant


title: RHH2497 (scRNA-seq)

description: Resistant


title: RHH2494 (scRNA-seq)

description: Resistant


title: RHH2491 (scRNA-seq)

description: Resistant


title: RHH2490 (scRNA-seq)

description: Resistant


title: RHH2492 (scRNA-seq)

description: Resistant


title: RHH2489 (scRNA-seq)

description: Resistant


title: RHH2488 (scRNA-seq)

description: Resistant


title: RHH2487 (scRNA-seq)

description: Resistant


title: RHH2484 (scRNA-seq)

description: Resistant


title: RHH2486 (scRNA-seq)

description: Resistant


title: RHH2485 (scRNA-seq)

description: Resistant


title: RHH2481 (scRNA-seq)

description: Resistant


title: RHH2480 (scRNA-seq)

description: Resistant


title: RHH2483 (scRNA-seq)

description: Resistant


title: RHH2479 (scRNA-seq)

description: Resistant


title: RHH2482 (scRNA-seq)

description: Resistant


title: RHH2477 (scRNA-seq)

description: Resistant


title: RHH2476 (scRNA-seq)

description: Resistant


title: RHH2475 (scRNA-seq)

description: Resistant


title: RHH2474 (scRNA-seq)

description: Resistant


title: RHH2471 (scRNA-seq)

description: Resistant


title: RHH2472 (scRNA-seq)

description: Resistant


title: RHH2473 (scRNA-seq)

description: Resistant


title: RHH2470 (scRNA-seq)

description: Resistant


title: RHH2469 (scRNA-seq)

description: Resistant


title: RHH2468 (scRNA-seq)

description: Resistant


title: RHH2466 (scRNA-seq)

description: Resistant


title: RHH2465 (scRNA-seq)

description: Resistant


title: RHH2493 (scRNA-seq)

description: Resistant


title: RHH2464 (scRNA-seq)

description: Resistant


title: RHH3302 (scRNA-seq)

description: Holiday

value: Holiday


title: RHH3301 (scRNA-seq)

description: Holiday


title: RHH3298 (scRNA-seq)

description: Holiday


title: RHH3299 (scRNA-seq)

description: Holiday


title: RHH3297 (scRNA-seq)

description: Holiday


title: RHH2478 (scRNA-seq)

description: Resistant


title: RHH3295 (scRNA-seq)

description: Holiday


title: RHH3290 (scRNA-seq)

description: Holiday


title: RHH3294 (scRNA-seq)

description: Holiday


title: RHH3293 (scRNA-seq)

description: Holiday


title: RHH3296 (scRNA-seq)

description: Holiday


title: RHH3287 (scRNA-seq)

description: Holiday


title: RHH3286 (scRNA-seq)

description: Holiday


title: RHH3292 (scRNA-seq)

description: Holiday


title: RHH3284 (scRNA-seq)

description: Holiday


title: RHH3289 (scRNA-seq)

description: Holiday


title: RHH3291 (scRNA-seq)

description: Holiday


title: RHH2467 (scRNA-seq)

description: Resistant


title: RHH3288 (scRNA-seq)

description: Holiday


title: RHH3285 (scRNA-seq)

description: Holiday


title: RHH3283 (scRNA-seq)

description: Holiday


title: RHH3279 (scRNA-seq)

description: Holiday


title: RHH3280 (scRNA-seq)

description: Holiday


title: RHH3282 (scRNA-seq)

description: Holiday


title: RHH3277 (scRNA-seq)

description: Holiday


title: RHH3276 (scRNA-seq)

description: Holiday


title: RHH3281 (scRNA-seq)

description: Holiday


title: RHH3275 (scRNA-seq)

description: Holiday


title: RHH3274 (scRNA-seq)

description: Holiday


title: RHH3273 (scRNA-seq)

description: Holiday


title: RHH3300 (scRNA-seq)

description: Holiday


title: RHH3271 (scRNA-seq)

description: Holiday


title: RHH3272 (scRNA-seq)

description: Holiday


title: RHH3269 (scRNA-seq)

description: Holiday


title: RHH3267 (scRNA-seq)

description: Holiday


title: RHH3266 (scRNA-seq)

description: Holiday


title: RHH3265 (scRNA-seq)

description: Holiday


title: RHH3262 (scRNA-seq)

description: Holiday


title: RHH3263 (scRNA-seq)

description: Holiday


title: RHH3261 (scRNA-seq)

description: Holiday


title: RHH3258 (scRNA-seq)

description: Holiday


title: RHH3259 (scRNA-seq)

description: Holiday


title: RHH3260 (scRNA-seq)

description: Holiday


title: RHH3264 (scRNA-seq)

description: Holiday


title: RHH3257 (scRNA-seq)

description: Holiday


title: RHH3256 (scRNA-seq)

description: Holiday


title: RHH3278 (scRNA-seq)

description: Holiday


title: RHH3255 (scRNA-seq)

description: Holiday


title: RHH3254 (scRNA-seq)

description: Holiday


title: RHH3252 (scRNA-seq)

description: Holiday


title: RHH3249 (scRNA-seq)

description: Holiday


title: RHH3248 (scRNA-seq)

description: Holiday


title: RHH3270 (scRNA-seq)

description: Holiday


title: RHH3250 (scRNA-seq)

description: Holiday


title: RHH3268 (scRNA-seq)

description: Holiday


title: RHH3247 (scRNA-seq)

description: Holiday


title: RHH3245 (scRNA-seq)

description: Holiday


title: RHH3244 (scRNA-seq)

description: Holiday


title: RHH3242 (scRNA-seq)

description: Holiday


title: RHH3241 (scRNA-seq)

description: Holiday


title: RHH3240 (scRNA-seq)

description: Holiday


title: RHH3239 (scRNA-seq)

description: Holiday


title: RHH3251 (scRNA-seq)

description: Holiday


title: RHH3236 (scRNA-seq)

description: Holiday


title: RHH3235 (scRNA-seq)

description: Holiday


title: RHH3238 (scRNA-seq)

description: Holiday


title: RHH3237 (scRNA-seq)

description: Holiday


title: RHH3227 (scRNA-seq)

description: Holiday


title: RHH3228 (scRNA-seq)

description: Holiday


title: RHH3230 (scRNA-seq)

description: Holiday


title: RHH3233 (scRNA-seq)

description: Holiday


title: RHH3232 (scRNA-seq)

description: Holiday


title: RHH3234 (scRNA-seq)

description: Holiday


title: RHH3246 (scRNA-seq)

description: Holiday


title: RHH3253 (scRNA-seq)

description: Holiday


title: RHH3229 (scRNA-seq)

description: Holiday


title: RHH3225 (scRNA-seq)

description: Holiday


title: RHH3231 (scRNA-seq)

description: Holiday


title: RHH3226 (scRNA-seq)

description: Holiday


title: RHH3224 (scRNA-seq)

description: Holiday


title: RHH3243 (scRNA-seq)

description: Holiday


title: RHH3223 (scRNA-seq)

description: Holiday


title: RHH3222 (scRNA-seq)

description: Holiday


title: RHH3220 (scRNA-seq)

description: Holiday


title: RHH3221 (scRNA-seq)

description: Holiday


title: RHH3216 (scRNA-seq)

description: Holiday


title: RHH3217 (scRNA-seq)

description: Holiday


title: RHH3219 (scRNA-seq)

description: Holiday


title: RHH3218 (scRNA-seq)

description: Holiday


title: RHH3215 (scRNA-seq)

description: Holiday


title: RHH3214 (scRNA-seq)

description: Holiday


title: RHH3213 (scRNA-seq)

description: Holiday


title: RHH3212 (scRNA-seq)

description: Holiday


title: RHH3211 (scRNA-seq)

description: Holiday


title: RHH2170 (scRNA-seq)

description: Resistant

value: Metastatic


title: RHH3210 (scRNA-seq)

description: Holiday


title: RHH2172 (scRNA-seq)

description: Resistant


title: RHH3208 (scRNA-seq)

description: Holiday


title: RHH2174 (scRNA-seq)

description: Resistant


title: RHH2171 (scRNA-seq)

description: Resistant


title: RHH2169 (scRNA-seq)

description: Resistant


title: RHH2175 (scRNA-seq)

description: Resistant


title: RHH3209 (scRNA-seq)

description: Holiday


title: RHH2167 (scRNA-seq)

description: Resistant


title: RHH2168 (scRNA-seq)

description: Resistant


title: RHH2164 (scRNA-seq)

description: Resistant


title: RHH2163 (scRNA-seq)

description: Resistant


title: RHH2162 (scRNA-seq)

description: Resistant


title: RHH2165 (scRNA-seq)

description: Resistant


title: RHH2161 (scRNA-seq)

description: Resistant


title: RHH2160 (scRNA-seq)

description: Resistant


title: RHH2159 (scRNA-seq)

description: Resistant


title: RHH2156 (scRNA-seq)

description: Resistant


title: RHH2157 (scRNA-seq)

description: Resistant


title: RHH2155 (scRNA-seq)

description: Resistant


title: RHH2154 (scRNA-seq)

description: Resistant


title: RHH2153 (scRNA-seq)

description: Resistant


title: RHH2173 (scRNA-seq)

description: Resistant


title: RHH3207 (scRNA-seq)

description: Holiday


title: RHH2151 (scRNA-seq)

description: Resistant


title: RHH2166 (scRNA-seq)

description: Resistant


title: RHH2147 (scRNA-seq)

description: Resistant


title: RHH2150 (scRNA-seq)

description: Resistant


title: RHH2145 (scRNA-seq)

description: Resistant


title: RHH2146 (scRNA-seq)

description: Resistant


title: RHH2140 (scRNA-seq)

description: Resistant


title: RHH2139 (scRNA-seq)

description: Resistant


title: RHH2148 (scRNA-seq)

description: Resistant


title: RHH2149 (scRNA-seq)

description: Resistant


title: RHH2137 (scRNA-seq)

description: Resistant


title: RHH2142 (scRNA-seq)

description: Resistant


title: RHH2158 (scRNA-seq)

description: Resistant


title: RHH2138 (scRNA-seq)

description: Resistant


title: RHH2144 (scRNA-seq)

description: Resistant


title: RHH2143 (scRNA-seq)

description: Resistant


title: RHH2134 (scRNA-seq)

description: Resistant


title: RHH2131 (scRNA-seq)

description: Resistant


title: RHH2130 (scRNA-seq)

description: Resistant


title: RHH2136 (scRNA-seq)

description: Resistant


title: RHH2132 (scRNA-seq)

description: Resistant


title: RHH2133 (scRNA-seq)

description: Resistant


title: RHH2127 (scRNA-seq)

description: Resistant


title: RHH2135 (scRNA-seq)

description: Resistant


title: RHH2152 (scRNA-seq)

description: Resistant


title: RHH2124 (scRNA-seq)

description: Resistant


title: RHH2128 (scRNA-seq)

description: Resistant


title: RHH2125 (scRNA-seq)

description: Resistant


title: RHH2126 (scRNA-seq)

description: Resistant


title: RHH2123 (scRNA-seq)

description: Resistant


title: RHH2141 (scRNA-seq)

description: Resistant


title: RHH2121 (scRNA-seq)

description: Resistant


title: RHH2122 (scRNA-seq)

description: Resistant


title: RHH2120 (scRNA-seq)

description: Resistant


title: RHH2119 (scRNA-seq)

description: Resistant


title: RHH2114 (scRNA-seq)

description: Resistant


title: RHH2117 (scRNA-seq)

description: Resistant


title: RHH2111 (scRNA-seq)

description: Resistant


title: RHH2118 (scRNA-seq)

description: Resistant


title: RHH2110 (scRNA-seq)

description: Resistant


title: RHH2129 (scRNA-seq)

description: Resistant


title: RHH2113 (scRNA-seq)

description: Resistant


title: RHH2107 (scRNA-seq)

description: Resistant


title: RHH2112 (scRNA-seq)

description: Resistant


title: RHH2109 (scRNA-seq)

description: Resistant


title: RHH2105 (scRNA-seq)

description: Resistant


title: RHH2115 (scRNA-seq)

description: Resistant


title: RHH2104 (scRNA-seq)

description: Resistant


title: RHH2108 (scRNA-seq)

description: Resistant


title: RHH2103 (scRNA-seq)

description: Resistant


title: RHH2106 (scRNA-seq)

description: Resistant


title: RHH2100 (scRNA-seq)

description: Resistant


title: RHH2096 (scRNA-seq)

description: Resistant


title: RHH2098 (scRNA-seq)

description: Resistant


title: RHH2099 (scRNA-seq)

description: Resistant


title: RHH2101 (scRNA-seq)

description: Resistant


title: RHH2097 (scRNA-seq)

description: Resistant


title: RHH2095 (scRNA-seq)

description: Resistant


title: RHH2102 (scRNA-seq)

description: Resistant


title: RHH2086 (scRNA-seq)

description: Resistant


title: RHH2091 (scRNA-seq)

description: Resistant


title: RHH2085 (scRNA-seq)

description: Resistant


title: RHH2087 (scRNA-seq)

description: Resistant


title: RHH2089 (scRNA-seq)

description: Resistant


title: RHH2094 (scRNA-seq)

description: Resistant


title: RHH2116 (scRNA-seq)

description: Resistant


title: RHH2092 (scRNA-seq)

description: Resistant


title: RHH2093 (scRNA-seq)

description: Resistant


title: RHH2090 (scRNA-seq)

description: Resistant


title: RHH2083 (scRNA-seq)

description: Resistant


title: RHH2071 (scRNA-seq)

description: Resistant


title: RHH2072 (scRNA-seq)

description: Resistant


title: RHH2078 (scRNA-seq)

description: Resistant


title: RHH2080 (scRNA-seq)

description: Resistant


title: RHH2081 (scRNA-seq)

description: Resistant


title: RHH2076 (scRNA-seq)

description: Resistant


title: RHH2074 (scRNA-seq)

description: Resistant


title: RHH2073 (scRNA-seq)

description: Resistant


title: RHH2069 (scRNA-seq)

description: Resistant


title: RHH2084 (scRNA-seq)

description: Resistant


title: RHH2075 (scRNA-seq)

description: Resistant


title: RHH2077 (scRNA-seq)

description: Resistant


title: RHH2070 (scRNA-seq)

description: Resistant


title: RHH2066 (scRNA-seq)

description: Resistant


title: RHH2068 (scRNA-seq)

description: Resistant


title: RHH2067 (scRNA-seq)

description: Resistant


title: RHH2082 (scRNA-seq)

description: Resistant


title: RHH2088 (scRNA-seq)

description: Resistant


title: RHH2079 (scRNA-seq)

description: Resistant


title: RHH2065 (scRNA-seq)

description: Resistant


title: RHH2064 (scRNA-seq)

description: Resistant


title: RHH2061 (scRNA-seq)

description: Resistant


title: RHH2059 (scRNA-seq)

description: Resistant


title: RHH2060 (scRNA-seq)

description: Resistant


title: RHH2062 (scRNA-seq)

description: Resistant


title: RHH2057 (scRNA-seq)

description: Resistant


title: RHH2056 (scRNA-seq)

description: Resistant


title: RHH2058 (scRNA-seq)

description: Resistant


title: RHH2050 (scRNA-seq)

description: Resistant


title: RHH2055 (scRNA-seq)

description: Resistant


title: RHH2049 (scRNA-seq)

description: Resistant


title: RHH2054 (scRNA-seq)

description: Resistant


title: RHH2053 (scRNA-seq)

description: Resistant


title: RHH2052 (scRNA-seq)

description: Resistant


title: RHH2047 (scRNA-seq)

description: Resistant


title: RHH2046 (scRNA-seq)

description: Resistant


title: RHH2048 (scRNA-seq)

description: Resistant


title: RHH2063 (scRNA-seq)

description: Resistant


title: RHH2045 (scRNA-seq)

description: Resistant


title: RHH2037 (scRNA-seq)

description: Resistant


title: RHH2042 (scRNA-seq)

description: Resistant


title: RHH2036 (scRNA-seq)

description: Resistant


title: RHH2039 (scRNA-seq)

description: Resistant


title: RHH2038 (scRNA-seq)

description: Resistant


title: RHH2040 (scRNA-seq)

description: Resistant


title: RHH2051 (scRNA-seq)

description: Resistant


title: RHH2031 (scRNA-seq)

description: Resistant


title: RHH2041 (scRNA-seq)

description: Resistant


title: RHH2035 (scRNA-seq)

description: Resistant


title: RHH2030 (scRNA-seq)

description: Resistant


title: RHH2034 (scRNA-seq)

description: Resistant


title: RHH2032 (scRNA-seq)

description: Resistant


title: RHH2029 (scRNA-seq)

description: Resistant


title: RHH2028 (scRNA-seq)

description: Resistant


title: RHH2027 (scRNA-seq)

description: Resistant


title: RHH2043 (scRNA-seq)

description: Resistant


title: RHH2044 (scRNA-seq)

description: Resistant


title: RHH2026 (scRNA-seq)

description: Resistant


title: RHH2022 (scRNA-seq)

description: Resistant


title: RHH2023 (scRNA-seq)

description: Resistant


title: RHH2021 (scRNA-seq)

description: Resistant


title: RHH2024 (scRNA-seq)

description: Resistant


title: RHH2025 (scRNA-seq)

description: Resistant


title: RHH2008 (scRNA-seq)

description: Resistant


title: RHH2007 (scRNA-seq)

description: Resistant


title: RHH2011 (scRNA-seq)

description: Resistant


title: RHH2012 (scRNA-seq)

description: Resistant


title: RHH2013 (scRNA-seq)

description: Resistant


title: RHH2020 (scRNA-seq)

description: Resistant


title: RHH2015 (scRNA-seq)

description: Resistant


title: RHH2033 (scRNA-seq)

description: Resistant


title: RHH2017 (scRNA-seq)

description: Resistant


title: RHH2010 (scRNA-seq)

description: Resistant


title: RHH2016 (scRNA-seq)

description: Resistant


title: RHH2009 (scRNA-seq)

description: Resistant


title: RHH2018 (scRNA-seq)

description: Resistant


title: RHH2014 (scRNA-seq)

description: Resistant


title: RHH2001 (scRNA-seq)

description: Resistant


title: RHH2019 (scRNA-seq)

description: Resistant


title: RHH2002 (scRNA-seq)

description: Resistant


title: RHH2005 (scRNA-seq)

description: Resistant


title: RHH2004 (scRNA-seq)

description: Resistant


title: RHH2000 (scRNA-seq)

description: Resistant


title: RHH1998 (scRNA-seq)

description: Resistant


title: RHH1997 (scRNA-seq)

description: Resistant


title: RHH1999 (scRNA-seq)

description: Resistant


title: RHH1996 (scRNA-seq)

description: Resistant


title: RHH1995 (scRNA-seq)

description: Resistant


title: RHH1994 (scRNA-seq)

description: Resistant


title: RHH1993 (scRNA-seq)

description: Resistant


title: RHH1992 (scRNA-seq)

description: Resistant


title: RHH2006 (scRNA-seq)

description: Resistant


title: RHH1990 (scRNA-seq)

description: Resistant


title: RHH1987 (scRNA-seq)

description: Resistant


title: RHH1988 (scRNA-seq)

description: Resistant


title: RHH1986 (scRNA-seq)

description: Resistant


title: RHH2003 (scRNA-seq)

description: Resistant


title: RHH1656 (scRNA-seq)

description: Sensitive

value: Sensitive


title: RHH1985 (scRNA-seq)

description: Resistant


title: RHH1657 (scRNA-seq)

description: Sensitive


title: RHH1661 (scRNA-seq)

description: Sensitive


title: RHH1984 (scRNA-seq)

description: Resistant


title: RHH1660 (scRNA-seq)

description: Sensitive


title: RHH1991 (scRNA-seq)

description: Resistant


title: RHH1658 (scRNA-seq)

description: Sensitive


title: RHH1654 (scRNA-seq)

description: Sensitive


title: RHH1653 (scRNA-seq)

description: Sensitive


title: RHH1650 (scRNA-seq)

description: Sensitive


title: RHH1655 (scRNA-seq)

description: Sensitive


title: RHH1649 (scRNA-seq)

description: Sensitive


title: RHH1647 (scRNA-seq)

description: Sensitive


title: RHH1646 (scRNA-seq)

description: Sensitive


title: RHH1651 (scRNA-seq)

description: Sensitive


title: RHH1644 (scRNA-seq)

description: Sensitive


title: RHH1643 (scRNA-seq)

description: Sensitive


title: RHH1648 (scRNA-seq)

description: Sensitive


title: RHH1641 (scRNA-seq)

description: Sensitive


title: RHH1640 (scRNA-seq)

description: Sensitive


title: RHH1636 (scRNA-seq)

description: Sensitive


title: RHH1637 (scRNA-seq)

description: Sensitive


title: RHH1638 (scRNA-seq)

description: Sensitive


title: RHH1652 (scRNA-seq)

description: Sensitive


title: RHH1635 (scRNA-seq)

description: Sensitive


title: RHH1634 (scRNA-seq)

description: Sensitive


title: RHH1633 (scRNA-seq)

description: Sensitive


title: RHH1659 (scRNA-seq)

description: Sensitive


title: RHH1630 (scRNA-seq)

description: Sensitive


title: RHH1629 (scRNA-seq)

description: Sensitive


title: RHH1632 (scRNA-seq)

description: Sensitive


title: RHH1626 (scRNA-seq)

description: Sensitive


title: RHH1627 (scRNA-seq)

description: Sensitive


title: RHH1628 (scRNA-seq)

description: Sensitive


title: RHH1645 (scRNA-seq)

description: Sensitive


title: RHH1625 (scRNA-seq)

description: Sensitive


title: RHH1624 (scRNA-seq)

description: Sensitive


title: RHH1623 (scRNA-seq)

description: Sensitive


title: RHH1621 (scRNA-seq)

description: Sensitive


title: RHH1622 (scRNA-seq)

description: Sensitive


title: RHH1642 (scRNA-seq)

description: Sensitive


title: RHH1619 (scRNA-seq)

description: Sensitive


title: RHH1618 (scRNA-seq)

description: Sensitive


title: RHH1617 (scRNA-seq)

description: Sensitive


title: RHH1615 (scRNA-seq)

description: Sensitive


title: RHH1616 (scRNA-seq)

description: Sensitive


title: RHH1613 (scRNA-seq)

description: Sensitive


title: RHH1614 (scRNA-seq)

description: Sensitive


title: RHH1612 (scRNA-seq)

description: Sensitive


title: RHH1610 (scRNA-seq)

description: Sensitive


title: RHH1611 (scRNA-seq)

description: Sensitive


title: RHH1609 (scRNA-seq)

description: Sensitive


title: RHH1604 (scRNA-seq)

description: Sensitive


title: RHH1607 (scRNA-seq)

description: Sensitive


title: RHH1605 (scRNA-seq)

description: Sensitive


title: RHH1603 (scRNA-seq)

description: Sensitive


title: RHH1639 (scRNA-seq)

description: Sensitive


title: RHH1601 (scRNA-seq)

description: Sensitive


title: RHH1602 (scRNA-seq)

description: Sensitive


title: RHH1620 (scRNA-seq)

description: Sensitive


title: RHH1597 (scRNA-seq)

description: Sensitive


title: RHH1598 (scRNA-seq)

description: Sensitive


title: RHH1600 (scRNA-seq)

description: Sensitive


title: RHH1596 (scRNA-seq)

description: Sensitive


title: RHH1595 (scRNA-seq)

description: Sensitive


title: RHH1599 (scRNA-seq)

description: Sensitive


title: RHH1593 (scRNA-seq)

description: Sensitive


title: RHH1591 (scRNA-seq)

description: Sensitive


title: RHH1594 (scRNA-seq)

description: Sensitive


title: RHH1590 (scRNA-seq)

description: Sensitive


title: RHH1588 (scRNA-seq)

description: Sensitive


title: RHH1589 (scRNA-seq)

description: Sensitive


title: RHH1583 (scRNA-seq)

description: Sensitive


title: RHH1587 (scRNA-seq)

description: Sensitive


title: RHH1586 (scRNA-seq)

description: Sensitive


title: RHH1580 (scRNA-seq)

description: Sensitive


title: RHH1584 (scRNA-seq)

description: Sensitive


title: RHH1581 (scRNA-seq)

description: Sensitive


title: RHH1592 (scRNA-seq)

description: Sensitive


title: RHH1579 (scRNA-seq)

description: Sensitive


title: RHH1582 (scRNA-seq)

description: Sensitive


title: RHH1578 (scRNA-seq)

description: Sensitive


title: RHH1608 (scRNA-seq)

description: Sensitive


title: RHH1577 (scRNA-seq)

description: Sensitive


title: RHH1574 (scRNA-seq)

description: Sensitive


title: RHH1571 (scRNA-seq)

description: Sensitive


title: RHH1576 (scRNA-seq)

description: Sensitive


title: RHH1573 (scRNA-seq)

description: Sensitive


title: RHH1569 (scRNA-seq)

description: Sensitive


title: RHH1567 (scRNA-seq)

description: Sensitive


title: RHH1585 (scRNA-seq)

description: Sensitive


title: RHH1983 (scRNA-seq)

description: Sensitive


title: RHH1572 (scRNA-seq)

description: Sensitive


title: RHH1570 (scRNA-seq)

description: Sensitive


title: RHH1981 (scRNA-seq)

description: Sensitive


title: RHH1568 (scRNA-seq)

description: Sensitive


title: RHH1980 (scRNA-seq)

description: Sensitive


title: RHH1979 (scRNA-seq)

description: Sensitive


title: RHH1989 (scRNA-seq)

description: Resistant


title: RHH1982 (scRNA-seq)

description: Sensitive


title: RHH1975 (scRNA-seq)

description: Sensitive


title: RHH1974 (scRNA-seq)

description: Sensitive


title: RHH1972 (scRNA-seq)

description: Sensitive


title: RHH1978 (scRNA-seq)

description: Sensitive


title: RHH1971 (scRNA-seq)

description: Sensitive


title: RHH1977 (scRNA-seq)

description: Sensitive


title: RHH1973 (scRNA-seq)

description: Sensitive


title: RHH1976 (scRNA-seq)

description: Sensitive


title: RHH1575 (scRNA-seq)

description: Sensitive


title: RHH1970 (scRNA-seq)

description: Sensitive


title: RHH1566 (scRNA-seq)

description: Sensitive


title: RHH1966 (scRNA-seq)

description: Sensitive


title: RHH1962 (scRNA-seq)

description: Sensitive


title: RHH1961 (scRNA-seq)

description: Sensitive


title: RHH1964 (scRNA-seq)

description: Sensitive


title: RHH1963 (scRNA-seq)

description: Sensitive


title: RHH1968 (scRNA-seq)

description: Sensitive


title: RHH1960 (scRNA-seq)

description: Sensitive


title: RHH1965 (scRNA-seq)

description: Sensitive


title: RHH1958 (scRNA-seq)

description: Sensitive


title: RHH1959 (scRNA-seq)

description: Sensitive


title: RHH1955 (scRNA-seq)

description: Sensitive


title: RHH1956 (scRNA-seq)

description: Sensitive


title: RHH1954 (scRNA-seq)

description: Sensitive


title: RHH1957 (scRNA-seq)

description: Sensitive


title: RHH1953 (scRNA-seq)

description: Sensitive


title: RHH1952 (scRNA-seq)

description: Sensitive


title: RHH1951 (scRNA-seq)

description: Sensitive


title: RHH1950 (scRNA-seq)

description: Sensitive


title: RHH1969 (scRNA-seq)

description: Sensitive


title: RHH1948 (scRNA-seq)

description: Sensitive


title: RHH1947 (scRNA-seq)

description: Sensitive


title: RHH1967 (scRNA-seq)

description: Sensitive


title: RHH1945 (scRNA-seq)

description: Sensitive


title: RHH1946 (scRNA-seq)

description: Sensitive


title: RHH1943 (scRNA-seq)

description: Sensitive


title: RHH1944 (scRNA-seq)

description: Sensitive


title: RHH1942 (scRNA-seq)

description: Sensitive


title: RHH1940 (scRNA-seq)

description: Sensitive


title: RHH1939 (scRNA-seq)

description: Sensitive


title: RHH1941 (scRNA-seq)

description: Sensitive


title: RHH1631 (scRNA-seq)

description: Sensitive


title: RHH1933 (scRNA-seq)

description: Sensitive


title: RHH1938 (scRNA-seq)

description: Sensitive


title: RHH1932 (scRNA-seq)

description: Sensitive


title: RHH1934 (scRNA-seq)

description: Sensitive


title: RHH1929 (scRNA-seq)

description: Sensitive


title: RHH1936 (scRNA-seq)

description: Sensitive


title: RHH1930 (scRNA-seq)

description: Sensitive


title: RHH1935 (scRNA-seq)

description: Sensitive


title: RHH1931 (scRNA-seq)

description: Sensitive


title: RHH1926 (scRNA-seq)

description: Sensitive


title: RHH1949 (scRNA-seq)

description: Sensitive


title: RHH1928 (scRNA-seq)

description: Sensitive


title: RHH1925 (scRNA-seq)

description: Sensitive


title: RHH1924 (scRNA-seq)

description: Sensitive


title: RHH1919 (scRNA-seq)

description: Sensitive


title: RHH1923 (scRNA-seq)

description: Sensitive


title: RHH1922 (scRNA-seq)

description: Sensitive


title: RHH1918 (scRNA-seq)

description: Sensitive


title: RHH1920 (scRNA-seq)

description: Sensitive


title: RHH1917 (scRNA-seq)

description: Sensitive


title: RHH1915 (scRNA-seq)

description: Sensitive


title: RHH1916 (scRNA-seq)

description: Sensitive


title: RHH1937 (scRNA-seq)

description: Sensitive


title: RHH1914 (scRNA-seq)

description: Sensitive


title: RHH1927 (scRNA-seq)

description: Sensitive


title: RHH1911 (scRNA-seq)

description: Sensitive


title: RHH1912 (scRNA-seq)

description: Sensitive


title: RHH1905 (scRNA-seq)

description: Sensitive


title: RHH1902 (scRNA-seq)

description: Sensitive


title: RHH1907 (scRNA-seq)

description: Sensitive


title: RHH1909 (scRNA-seq)

description: Sensitive


title: RHH1900 (scRNA-seq)

description: Sensitive


title: RHH1910 (scRNA-seq)

description: Sensitive


title: RHH1921 (scRNA-seq)

description: Sensitive


title: RHH1904 (scRNA-seq)

description: Sensitive


title: RHH1908 (scRNA-seq)

description: Sensitive


title: RHH1901 (scRNA-seq)

description: Sensitive


title: RHH1906 (scRNA-seq)

description: Sensitive


title: RHH1898 (scRNA-seq)

description: Sensitive


title: RHH1899 (scRNA-seq)

description: Sensitive


title: RHH1897 (scRNA-seq)

description: Sensitive


title: RHH1903 (scRNA-seq)

description: Sensitive


title: RHH1896 (scRNA-seq)

description: Sensitive


title: RHH1895 (scRNA-seq)

description: Sensitive


title: RHH1892 (scRNA-seq)

description: Sensitive


title: RHH1894 (scRNA-seq)

description: Sensitive


title: RHH1891 (scRNA-seq)

description: Sensitive


title: RHH1889 (scRNA-seq)

description: Sensitive


title: RHH1888 (scRNA-seq)

description: Sensitive


title: RHH1890 (scRNA-seq)

description: Sensitive


title: RHH1913 (scRNA-seq)

description: Sensitive


title: RHH1887 (scRNA-seq)

description: Sensitive


title: RHH1886 (scRNA-seq)

description: Sensitive


title: RHH1884 (scRNA-seq)

description: Sensitive


title: RHH1885 (scRNA-seq)

description: Sensitive


title: RHH1883 (scRNA-seq)

description: Sensitive


title: RHH1882 (scRNA-seq)

description: Sensitive


title: RHH1878 (scRNA-seq)

description: Sensitive


title: RHH1877 (scRNA-seq)

description: Sensitive


title: RHH1893 (scRNA-seq)

description: Sensitive


title: RHH1875 (scRNA-seq)

description: Sensitive


title: RHH1871 (scRNA-seq)

description: Sensitive


title: RHH1879 (scRNA-seq)

description: Sensitive


title: RHH1870 (scRNA-seq)

description: Sensitive


title: RHH1867 (scRNA-seq)

description: Sensitive


title: RHH1868 (scRNA-seq)

description: Sensitive


title: RHH1866 (scRNA-seq)

description: Sensitive


title: RHH1869 (scRNA-seq)

description: Sensitive


title: RHH1872 (scRNA-seq)

description: Sensitive


title: RHH1865 (scRNA-seq)

description: Sensitive


title: RHH1863 (scRNA-seq)

description: Sensitive


title: RHH1873 (scRNA-seq)

description: Sensitive


title: RHH1862 (scRNA-seq)

description: Sensitive


title: RHH1861 (scRNA-seq)

description: Sensitive


title: RHH1860 (scRNA-seq)

description: Sensitive


title: RHH1864 (scRNA-seq)

description: Sensitive


title: RHH1859 (scRNA-seq)

description: Sensitive


title: RHH1858 (scRNA-seq)

description: Sensitive


title: RHH1880 (scRNA-seq)

description: Sensitive


title: RHH1857 (scRNA-seq)

description: Sensitive


title: RHH1881 (scRNA-seq)

description: Sensitive


title: RHH1855 (scRNA-seq)

description: Sensitive


title: RHH1876 (scRNA-seq)

description: Sensitive


title: RHH1854 (scRNA-seq)

description: Sensitive


title: RHH1606 (scRNA-seq)

description: Sensitive


title: RHH1874 (scRNA-seq)

description: Sensitive


title: RHH1853 (scRNA-seq)

description: Sensitive


title: RHH1850 (scRNA-seq)

description: Sensitive


title: RHH1851 (scRNA-seq)

description: Sensitive


title: RHH1852 (scRNA-seq)

description: Sensitive


title: RHH1849 (scRNA-seq)

description: Sensitive


title: RHH1848 (scRNA-seq)

description: Sensitive


title: RHH1845 (scRNA-seq)

description: Sensitive


title: RHH1846 (scRNA-seq)

description: Sensitive


title: RHH1844 (scRNA-seq)

description: Sensitive


title: RHH1842 (scRNA-seq)

description: Sensitive


title: RHH1840 (scRNA-seq)

description: Sensitive


title: RHH1837 (scRNA-seq)

description: Sensitive


title: RHH1838 (scRNA-seq)

description: Sensitive


title: RHH1839 (scRNA-seq)

description: Sensitive


title: RHH1843 (scRNA-seq)

description: Sensitive


title: RHH1836 (scRNA-seq)

description: Sensitive


title: RHH1835 (scRNA-seq)

description: Sensitive


title: RHH1833 (scRNA-seq)

description: Sensitive


title: RHH1832 (scRNA-seq)

description: Sensitive


title: RHH1856 (scRNA-seq)

description: Sensitive


title: RHH1834 (scRNA-seq)

description: Sensitive


title: RHH1831 (scRNA-seq)

description: Sensitive


title: RHH1830 (scRNA-seq)

description: Sensitive


title: RHH1827 (scRNA-seq)

description: Sensitive


title: RHH1825 (scRNA-seq)

description: Sensitive


title: RHH1826 (scRNA-seq)

description: Sensitive


title: RHH1828 (scRNA-seq)

description: Sensitive


title: RHH1847 (scRNA-seq)

description: Sensitive


title: RHH1821 (scRNA-seq)

description: Sensitive


title: RHH1819 (scRNA-seq)

description: Sensitive


title: RHH1820 (scRNA-seq)

description: Sensitive


title: RHH1824 (scRNA-seq)

description: Sensitive


title: RHH1818 (scRNA-seq)

description: Sensitive


title: RHH1817 (scRNA-seq)

description: Sensitive


title: RHH1841 (scRNA-seq)

description: Sensitive


title: RHH1822 (scRNA-seq)

description: Sensitive


title: RHH1816 (scRNA-seq)

description: Sensitive


title: RHH1815 (scRNA-seq)

description: Sensitive


title: RHH1814 (scRNA-seq)

description: Sensitive


title: RHH1813 (scRNA-seq)

description: Sensitive


title: RHH1829 (scRNA-seq)

description: Sensitive


title: RHH1806 (scRNA-seq)

description: Sensitive


title: RHH1804 (scRNA-seq)

description: Sensitive


title: RHH1811 (scRNA-seq)

description: Sensitive


title: RHH1809 (scRNA-seq)

description: Sensitive


title: RHH1805 (scRNA-seq)

description: Sensitive


title: RHH1810 (scRNA-seq)

description: Sensitive


title: RHH1812 (scRNA-seq)

description: Sensitive


title: RHH1808 (scRNA-seq)

description: Sensitive


title: RHH1802 (scRNA-seq)

description: Sensitive


title: RHH1823 (scRNA-seq)

description: Sensitive


title: RHH1800 (scRNA-seq)

description: Sensitive


title: RHH1798 (scRNA-seq)

description: Sensitive


title: RHH1797 (scRNA-seq)

description: Sensitive


title: RHH1560 (scRNA-seq)

description: Sensitive


title: RHH1561 (scRNA-seq)

description: Sensitive


title: RHH1794 (scRNA-seq)

description: Sensitive


title: RHH1796 (scRNA-seq)

description: Sensitive


title: RHH1562 (scRNA-seq)

description: Sensitive


title: RHH1564 (scRNA-seq)

description: Sensitive


title: RHH1565 (scRNA-seq)

description: Sensitive


title: RHH1563 (scRNA-seq)

description: Sensitive


title: RHH1795 (scRNA-seq)

description: Sensitive


title: RHH1792 (scRNA-seq)

description: Sensitive


title: RHH1559 (scRNA-seq)

description: Sensitive


title: RHH1558 (scRNA-seq)

description: Sensitive


title: RHH1801 (scRNA-seq)

description: Sensitive


title: RHH1803 (scRNA-seq)

description: Sensitive


title: RHH1553 (scRNA-seq)

description: Sensitive


title: RHH1557 (scRNA-seq)

description: Sensitive


title: RHH1554 (scRNA-seq)

description: Sensitive


title: RHH1556 (scRNA-seq)

description: Sensitive


title: RHH1552 (scRNA-seq)

description: Sensitive


title: RHH1551 (scRNA-seq)

description: Sensitive


title: RHH1555 (scRNA-seq)

description: Sensitive


title: RHH1793 (scRNA-seq)

description: Sensitive


title: RHH1550 (scRNA-seq)

description: Sensitive


title: RHH1549 (scRNA-seq)

description: Sensitive


title: RHH1548 (scRNA-seq)

description: Sensitive


title: RHH1547 (scRNA-seq)

description: Sensitive


title: RHH1546 (scRNA-seq)

description: Sensitive


title: RHH1543 (scRNA-seq)

description: Sensitive


title: RHH1537 (scRNA-seq)

description: Sensitive


title: RHH1539 (scRNA-seq)

description: Sensitive


title: RHH1540 (scRNA-seq)

description: Sensitive


title: RHH1541 (scRNA-seq)

description: Sensitive


title: RHH1542 (scRNA-seq)

description: Sensitive


title: RHH1544 (scRNA-seq)

description: Sensitive


title: RHH1534 (scRNA-seq)

description: Sensitive


title: RHH1536 (scRNA-seq)

description: Sensitive


title: RHH1532 (scRNA-seq)

description: Sensitive


title: RHH1531 (scRNA-seq)

description: Sensitive


title: RHH1527 (scRNA-seq)

description: Sensitive


title: RHH1528 (scRNA-seq)

description: Sensitive


title: RHH1533 (scRNA-seq)

description: Sensitive


title: RHH1530 (scRNA-seq)

description: Sensitive


title: RHH1526 (scRNA-seq)

description: Sensitive


title: RHH1525 (scRNA-seq)

description: Sensitive


title: RHH1523 (scRNA-seq)

description: Sensitive


title: RHH1522 (scRNA-seq)

description: Sensitive


title: RHH1520 (scRNA-seq)

description: Sensitive


title: RHH1521 (scRNA-seq)

description: Sensitive


title: RHH1529 (scRNA-seq)

description: Sensitive


title: RHH1519 (scRNA-seq)

description: Sensitive


title: RHH1518 (scRNA-seq)

description: Sensitive


title: RHH1535 (scRNA-seq)

description: Sensitive


title: RHH1538 (scRNA-seq)

description: Sensitive


title: RHH1512 (scRNA-seq)

description: Sensitive


title: RHH1514 (scRNA-seq)

description: Sensitive


title: RHH1515 (scRNA-seq)

description: Sensitive


title: RHH1517 (scRNA-seq)

description: Sensitive


title: RHH1516 (scRNA-seq)

description: Sensitive


title: RHH1510 (scRNA-seq)

description: Sensitive


title: RHH1511 (scRNA-seq)

description: Sensitive


title: RHH1513 (scRNA-seq)

description: Sensitive


title: RHH1509 (scRNA-seq)

description: Sensitive


title: RHH1524 (scRNA-seq)

description: Sensitive


title: RHH1507 (scRNA-seq)

description: Sensitive


title: RHH1503 (scRNA-seq)

description: Sensitive


title: RHH1506 (scRNA-seq)

description: Sensitive


title: RHH1508 (scRNA-seq)

description: Sensitive


title: RHH1501 (scRNA-seq)

description: Sensitive


title: RHH1505 (scRNA-seq)

description: Sensitive


title: RHH1499 (scRNA-seq)

description: Sensitive


title: RHH1500 (scRNA-seq)

description: Sensitive


title: RHH1498 (scRNA-seq)

description: Sensitive


title: RHH1497 (scRNA-seq)

description: Sensitive


title: RHH1496 (scRNA-seq)

description: Sensitive


title: RHH1493 (scRNA-seq)

description: Sensitive


title: RHH1494 (scRNA-seq)

description: Sensitive


title: RHH1495 (scRNA-seq)

description: Sensitive


title: RHH1504 (scRNA-seq)

description: Sensitive


title: RHH1491 (scRNA-seq)

description: Sensitive


title: RHH1492 (scRNA-seq)

description: Sensitive


title: RHH1489 (scRNA-seq)

description: Sensitive


title: RHH1490 (scRNA-seq)

description: Sensitive


title: RHH1487 (scRNA-seq)

description: Sensitive


title: RHH1502 (scRNA-seq)

description: Sensitive


title: RHH1480 (scRNA-seq)

description: Sensitive


title: RHH1484 (scRNA-seq)

description: Sensitive


title: RHH1483 (scRNA-seq)

description: Sensitive


title: RHH3206 (scRNA-seq)

description: Holiday


title: RHH3204 (scRNA-seq)

description: Holiday


title: RHH1482 (scRNA-seq)

description: Sensitive


title: RHH1481 (scRNA-seq)

description: Sensitive


title: RHH3202 (scRNA-seq)

description: Holiday


title: RHH3205 (scRNA-seq)

description: Holiday


title: RHH1545 (scRNA-seq)

description: Sensitive


title: RHH1486 (scRNA-seq)

description: Sensitive


title: RHH3200 (scRNA-seq)

description: Holiday


title: RHH3201 (scRNA-seq)

description: Holiday


title: RHH3199 (scRNA-seq)

description: Holiday


title: RHH3198 (scRNA-seq)

description: Holiday


title: RHH3197 (scRNA-seq)

description: Holiday


title: RHH1485 (scRNA-seq)

description: Sensitive


title: RHH3196 (scRNA-seq)

description: Holiday


title: RHH3195 (scRNA-seq)

description: Holiday


title: RHH1488 (scRNA-seq)

description: Sensitive


title: RHH3193 (scRNA-seq)

description: Holiday


title: RHH3191 (scRNA-seq)

description: Holiday


title: RHH3192 (scRNA-seq)

description: Holiday


title: RHH3203 (scRNA-seq)

description: Holiday


title: RHH3188 (scRNA-seq)

description: Holiday


title: RHH3179 (scRNA-seq)

description: Holiday


title: RHH3182 (scRNA-seq)

description: Holiday


title: RHH3184 (scRNA-seq)

description: Holiday


title: RHH3189 (scRNA-seq)

description: Holiday


title: RHH3183 (scRNA-seq)

description: Holiday


title: RHH3187 (scRNA-seq)

description: Holiday


title: RHH3185 (scRNA-seq)

description: Holiday


title: RHH3180 (scRNA-seq)

description: Holiday


title: RHH3186 (scRNA-seq)

description: Holiday


title: RHH3190 (scRNA-seq)

description: Holiday


title: RHH3177 (scRNA-seq)

description: Holiday


title: RHH3176 (scRNA-seq)

description: Holiday


title: RHH1479 (scRNA-seq)

description: Sensitive


title: RHH3181 (scRNA-seq)

description: Holiday


title: RHH3175 (scRNA-seq)

description: Holiday


title: RHH3172 (scRNA-seq)

description: Holiday


title: RHH3171 (scRNA-seq)

description: Holiday


title: RHH3174 (scRNA-seq)

description: Holiday


title: RHH3170 (scRNA-seq)

description: Holiday


title: RHH3173 (scRNA-seq)

description: Holiday


title: RHH3169 (scRNA-seq)

description: Holiday


title: RHH3168 (scRNA-seq)

description: Holiday


title: RHH3166 (scRNA-seq)

description: Holiday


title: RHH3194 (scRNA-seq)

description: Holiday


title: RHH3178 (scRNA-seq)

description: Holiday


title: RHH3165 (scRNA-seq)

description: Holiday


title: RHH3162 (scRNA-seq)

description: Holiday


title: RHH3164 (scRNA-seq)

description: Holiday


title: RHH3163 (scRNA-seq)

description: Holiday


title: RHH3160 (scRNA-seq)

description: Holiday


title: RHH3157 (scRNA-seq)

description: Holiday


title: RHH3153 (scRNA-seq)

description: Holiday


title: RHH3156 (scRNA-seq)

description: Holiday


title: RHH3159 (scRNA-seq)

description: Holiday


title: RHH3152 (scRNA-seq)

description: Holiday


title: RHH3154 (scRNA-seq)

description: Holiday


title: RHH3150 (scRNA-seq)

description: Holiday


title: RHH3155 (scRNA-seq)

description: Holiday


title: RHH3161 (scRNA-seq)

description: Holiday


title: RHH3149 (scRNA-seq)

description: Holiday


title: RHH3151 (scRNA-seq)

description: Holiday


title: RHH3148 (scRNA-seq)

description: Holiday


title: RHH3145 (scRNA-seq)

description: Holiday


title: RHH3144 (scRNA-seq)

description: Holiday


title: RHH3146 (scRNA-seq)

description: Holiday


title: RHH3141 (scRNA-seq)

description: Holiday


title: RHH3147 (scRNA-seq)

description: Holiday


title: RHH1799 (scRNA-seq)

description: Sensitive


title: RHH3143 (scRNA-seq)

description: Holiday


title: RHH3140 (scRNA-seq)

description: Holiday


title: RHH3139 (scRNA-seq)

description: Holiday


title: RHH3138 (scRNA-seq)

description: Holiday


title: RHH3137 (scRNA-seq)

description: Holiday


title: RHH3136 (scRNA-seq)

description: Holiday


title: RHH3135 (scRNA-seq)

description: Holiday


title: RHH3134 (scRNA-seq)

description: Holiday


title: RHH3133 (scRNA-seq)

description: Holiday


title: RHH3132 (scRNA-seq)

description: Holiday


title: RHH3129 (scRNA-seq)

description: Holiday


title: RHH3142 (scRNA-seq)

description: Holiday


title: RHH3127 (scRNA-seq)

description: Holiday


title: RHH3128 (scRNA-seq)

description: Holiday


title: RHH3130 (scRNA-seq)

description: Holiday


title: RHH3121 (scRNA-seq)

description: Holiday


title: RHH3124 (scRNA-seq)

description: Holiday


title: RHH3118 (scRNA-seq)

description: Holiday


title: RHH3119 (scRNA-seq)

description: Holiday


title: RHH3120 (scRNA-seq)

description: Holiday


title: RHH3117 (scRNA-seq)

description: Holiday


title: RHH3123 (scRNA-seq)

description: Holiday


title: RHH3125 (scRNA-seq)

description: Holiday


title: RHH3115 (scRNA-seq)

description: Holiday


title: RHH3114 (scRNA-seq)

description: Holiday


title: RHH3122 (scRNA-seq)

description: Holiday


title: RHH3113 (scRNA-seq)

description: Holiday


title: RHH3131 (scRNA-seq)

description: Holiday


title: RHH3126 (scRNA-seq)

description: Holiday


title: RHH3112 (scRNA-seq)

description: Holiday


title: RHH3111 (scRNA-seq)

description: Holiday


title: RHH3110 (scRNA-seq)

description: Resistant


title: RHH3106 (scRNA-seq)

description: Resistant


title: RHH3104 (scRNA-seq)

description: Resistant


title: RHH3107 (scRNA-seq)

description: Resistant


title: RHH3116 (scRNA-seq)

description: Holiday


title: RHH3108 (scRNA-seq)

description: Resistant


title: RHH3103 (scRNA-seq)

description: Resistant


title: RHH3102 (scRNA-seq)

description: Resistant


title: RHH3105 (scRNA-seq)

description: Resistant


title: RHH3101 (scRNA-seq)

description: Resistant


title: RHH3099 (scRNA-seq)

description: Resistant


title: RHH3092 (scRNA-seq)

description: Resistant


title: RHH3096 (scRNA-seq)

description: Resistant


title: RHH3090 (scRNA-seq)

description: Resistant


title: RHH3097 (scRNA-seq)

description: Resistant


title: RHH3095 (scRNA-seq)

description: Resistant


title: RHH3091 (scRNA-seq)

description: Resistant


title: RHH3098 (scRNA-seq)

description: Resistant


title: RHH3094 (scRNA-seq)

description: Resistant


title: RHH3100 (scRNA-seq)

description: Resistant


title: RHH3088 (scRNA-seq)

description: Resistant


title: RHH3089 (scRNA-seq)

description: Resistant


title: RHH3109 (scRNA-seq)

description: Resistant


title: RHH3085 (scRNA-seq)

description: Resistant


title: RHH3084 (scRNA-seq)

description: Resistant


title: RHH3086 (scRNA-seq)

description: Resistant


title: RHH3087 (scRNA-seq)

description: Resistant


title: RHH1807 (scRNA-seq)

description: Sensitive


title: RHH3082 (scRNA-seq)

description: Resistant


title: RHH3081 (scRNA-seq)

description: Resistant


title: RHH3080 (scRNA-seq)

description: Resistant


title: RHH3079 (scRNA-seq)

description: Resistant


title: RHH3078 (scRNA-seq)

description: Resistant


title: RHH3077 (scRNA-seq)

description: Resistant


title: RHH3093 (scRNA-seq)

description: Resistant


title: RHH3074 (scRNA-seq)

description: Resistant


title: RHH3073 (scRNA-seq)

description: Resistant


title: RHH3072 (scRNA-seq)

description: Resistant


title: RHH3071 (scRNA-seq)

description: Resistant


title: RHH3070 (scRNA-seq)

description: Resistant


title: RHH3083 (scRNA-seq)

description: Resistant


title: Postveraison berry (12_14 weeks post flowering), 24 hours after heat shock (HSPpos013_06.t7.r1)

type: RNA

city: Glen Osmond

first: Mark

middle: Raymond

last: Thomas

state: SA

address: PO Box 350

department: Plant Industry

country: Australia

institute: CSIRO

description: deseeded, ripe (postverasion) berries grown  under laboratory conditions in a growth cabinet, sampled 24 hours post heat shock treatment

hyb_protocol: Affymetrix Fluidics Station 450, Biotin/Streptavidin detection

scan_protocol: The GeneChips were scanned using theGeneChip Scanner 3000

data_processing: Data normalized using the GCRMA R package from Bioconductor

label: biotin

organism: Vitis vinifera

source_name: postveraison berry (12_14 weeks post flowering), 24 hours after heat shock

label_protocol: Affymetrix One Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labeling kit

growth_protocol: Berries were collected from bunches from plants grown in a growth cabinet

extract_protocol: The modified RNAeasy RNA extraction method (Qiagen)

treatment_protocol: Plants were acclimatized for 48hrs 16oC day/night for a 16hr day. Plants were moved to a growth chamber set at 38oC for heat shock treatment.

tag: Cabernet Sauvignon


title: RHH3067 (scRNA-seq)

description: Resistant


title: RHH3068 (scRNA-seq)

description: Resistant


title: RHH3065 (scRNA-seq)

description: Resistant


title: RHH3064 (scRNA-seq)

description: Resistant


title: Postveraison berry (12_14 weeks post flowering), 14 hours after heat shock (HSPpos012_06.t6.r2)

description: deseeded, ripe (postverasion) berries grown  under laboratory conditions in a growth cabinet, sampled 14 hours post heat shock treatment

source_name: postveraison berry (12_14 weeks post flowering), 14 hours after heat shock


title: RHH3076 (scRNA-seq)

description: Resistant


title: Postveraison berry (12_14 weeks post flowering), 14 hours after heat shock (HSPpos011_06.t6.r1)


title: RHH3075 (scRNA-seq)

description: Resistant


title: Postveraison berry (12_14 weeks post flowering), 7 hours after heat shock (HSPpos008_06.t4.r2)

description: deseeded, ripe (postverasion) berries grown  under laboratory conditions in a growth cabinet, sampled 7 hours post heat shock treatment

source_name: postveraison berry (12_14 weeks post flowering), 7 hours after heat shock


title: Postveraison berry (12_14 weeks post flowering), 9 hours after heat shock (HSPpos009_06.t5.r1)

description: deseeded, ripe (postverasion) berries grown  under laboratory conditions in a growth cabinet, sampled 9 hours post heat shock treatment

source_name: postveraison berry (12_14 weeks post flowering), 9 hours after heat shock


title: Postveraison berry (12_14 weeks post flowering), 24 hours after heat shock (HSPpos014_06.t7.r2)


title: RHH3063 (scRNA-seq)

description: Resistant


title: Postveraison berry (12_14 weeks post flowering), 7 hours after heat shock (HSPpos007_06.t4.r1)


title: Postveraison berry (12_14 weeks post flowering), 4 hours after heat shock (HSPpos006_06.t3.r2)

description: deseeded, ripe (postverasion) berries grown  under laboratory conditions in a growth cabinet, sampled 4 hours post heat shock treatment

source_name: postveraison berry (12_14 weeks post flowering), 4 hours after heat shock


title: RHH3069 (scRNA-seq)

description: Resistant


title: RHH3062 (scRNA-seq)

description: Resistant


title: Postveraison berry (12_14 weeks post flowering), 4 hours after heat shock (HSPpos005_06.t3.r1)


title: Postveraison berry (12_14 weeks post flowering), 1 hour after heat shock (HSPpos004_06.t2.r2)

description: deseeded, ripe (postverasion) berries grown  under laboratory conditions in a growth cabinet, sampled 1 hour post heat shock treatment

source_name: postveraison berry (12_14 weeks post flowering), 1 hour after heat shock


title: RHH3061 (scRNA-seq)

description: Resistant


title: Postveraison berry (12_14 weeks post flowering),1 hour after heat shock (HSPpos003_06.t2.r1)

source_name: postveraison berry (12_14 weeks post flowering),1 hour after heat shock


title: Postveraison berry (12_14 weeks post flowering), 0 hours after heat shock (HSPpos002_06.t1.r2)

description: deseeded, ripe (postverasion) berries grown  under laboratory conditions in a growth cabinet, sampled before heat shock treatment

source_name: postveraison berry (12_14 weeks post flowering), 0 hours after heat shock


title: Postveraison berry (12_14 weeks post flowering), 9 hours after heat shock (HSPpos010_06.t5.r2)


title: RHH3060 (scRNA-seq)

description: Resistant


title: Postveraison berry (12_14 weeks post flowering), 0 hours after heat shock (HSPpos001_06.t1.r1)


title: RHH3059 (scRNA-seq)

description: Resistant


title: Preveraison berry (5_6 weeks post flowering), 24 hours after heat shock (HSPpre014_06.t7.r2)

description: deseeded, unripe (preveraison) berries grown  under laboratory conditions in a growth cabinet, sampled 24 hours post heat shock treatment

source_name: preveraison berry (5_6 weeks post flowering), 24 hours after heat shock


title: Preveraison berry (5_6 weeks post flowering), 24 hours after heat shock (HSPpre013_06.t7.r1)


title: RHH3058 (scRNA-seq)

description: Resistant


title: RHH3057 (scRNA-seq)

description: Resistant


title: RHH3055 (scRNA-seq)

description: Resistant


title: RHH3056 (scRNA-seq)

description: Resistant


title: Preveraison berry (5_6 weeks post flowering), 14 hours after heat shock (HSPpre011_06.t6.r1)

description: deseeded, unripe (preveraison) berries grown  under laboratory conditions in a growth cabinet, sampled 14 hours post heat shock treatment

source_name: preveraison berry (5_6 weeks post flowering), 14 hours after heat shock


title: RHH3054 (scRNA-seq)

description: Resistant


title: RHH3053 (scRNA-seq)

description: Resistant


title: RHH3052 (scRNA-seq)

description: Resistant


title: Preveraison berry (5_6 weeks post flowering), 9 hours after heat shock (HSPpre010_06.t5.r2)

description: deseeded, unripe (preveraison) berries grown  under laboratory conditions in a growth cabinet, sampled 9 hours post heat shock treatment

source_name: preveraison berry (5_6 weeks post flowering), 9 hours after heat shock


title: RHH3051 (scRNA-seq)

description: Resistant


title: RHH3050 (scRNA-seq)

description: Resistant


title: Preveraison berry (5_6 weeks post flowering), 9 hours after heat shock (HSPpre009_06.t5.r1)


title: Preveraison berry (5_6 weeks post flowering), 7 hours after heat shock (HSPpre008_06.t4.r2)

description: deseeded, unripe (preveraison) berries grown  under laboratory conditions in a growth cabinet, sampled 7 hours post heat shock treatment

source_name: preveraison berry (5_6 weeks post flowering), 7 hours after heat shock


title: Preveraison berry (5_6 weeks post flowering), 14 hours after heat shock (HSPpre012_06.t6.r2)

description: deseeded, unripe berries (preveraison) grown  under laboratory conditions in a growth cabinet, sampled 14 hours post heat shock treatment


title: RHH3049 (scRNA-seq)

description: Resistant


title: RHH3047 (scRNA-seq)

description: Resistant


title: Preveraison berry (5_6 weeks post flowering), 7 hours after heat shock (HSPpre007_06.t4.r1)


title: RHH3046 (scRNA-seq)

description: Resistant


title: Preveraison berry (5_6 weeks post flowering), 1 hour after heat shock (HSPpre003_06.t2.r1)

description: deseeded, unripe (preveraison) berries grown  under laboratory conditions in a growth cabinet, sampled 1 hour post heat shock treatment

source_name: preveraison berry (5_6 weeks post flowering), 1 hour after heat shock


title: Preveraison berry (5_6 weeks post flowering), 0 hours after heat shock (HSPpre001_06.t1.r1)

description: deseeded, unripe (preveraison) berries grown  under laboratory conditions in a growth cabinet before heat shock treatment

source_name: preveraison berry (5_6 weeks post flowering), 0 hours after heat shock


title: HOMbr_avg009-06.r3

description: pooled deseeded grape berries

data_processing: Data normalised using the GCRMA R package from Bioconductor

source_name: Deseeded grape berries sampled 6 hours post brassinosteroid _aminoethoxyvinylglycine treatment

label_protocol: Affymetrix One Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labelling kit

growth_protocol: Berries were collected from bunches on field grown plants

treatment_protocol: The hormone treatments were ethephon, abscisic acid, brassinosteroid, water and aminoethoxyvinylglycine, ethanol and aminoethoxyvinylglycine, abscisic acid and aminoethoxyvinylglycine, brassinosteroid and aminoethoxyvinylglycine. Control treatments were water and ethanol.


title: RHH3044 (scRNA-seq)

description: Resistant


title: Preveraison berry (5_6 weeks post flowering), 4 hours after heat shock (HSPpre006_06.t3.r2)

description: deseeded, unripe (preveraison) berries grown  under laboratory conditions in a growth cabinet, sampled 4 hours post heat shock treatment

source_name: preveraison berry (5_6 weeks post flowering), 4 hours after heat shock


title: RHH3043 (scRNA-seq)

description: Resistant


title: HOMab_avg009-06.r3

description: pooled deseeded grape berries

source_name: Deseeded grape berries sampled 6 hours post abscisic acid _aminoethoxyvinylglycine treatment


title: HOMbr_avg007-06.r1

description: pooled deseeded grape berries


title: RHH3048 (scRNA-seq)

description: Resistant


title: RHH3041 (scRNA-seq)

description: Resistant


title: RHH3042 (scRNA-seq)

description: Resistant


title: RHH3040 (scRNA-seq)

description: Resistant


title: RHH3039 (scRNA-seq)

description: Resistant


title: RHH3167 (scRNA-seq)

description: Holiday


title: Preveraison berry (5_6 weeks post flowering), 0 hours after heat shock (HSPpre002_06.t1.r2)

description: deseeded, unripe (preveraison) berries grown  under laboratory conditions in a growth cabinet, sampled before heat shock treatment


title: HOMbr_avg008-06.r2

description: pooled deseeded grape berries


title: RHH3045 (scRNA-seq)

description: Resistant


title: HOMab_avg007-06.r1

description: pooled deseeded grape berries


title: HOMab_avg008-06.r2

description: pooled deseeded grape berries


title: HOMeh_avg007-06.r1

description: pooled deseeded grape berries

source_name: Deseeded grape berries sampled 6 hours post ethanol_aminoethoxyvinylglycine treatment


title: Preveraison berry (5_6 weeks post flowering), 4 hours after heat shock (HSPpre005_06.t3.r1)


title: RHH3036 (scRNA-seq)

description: Resistant


title: HOMwa_avg007-06.r1

description: pooled deseeded grape berries

source_name: Deseeded grape berries sampled 6 hours post water_aminoethoxyvinylglycine treatment


title: HOMwa_avg008-06.r2

description: pooled deseeded grape berries


title: HOMbr009-06.r3

description: pooled deseeded grape berries

source_name: Deseeded grape berries sampled 6 hours post brassinosteroid  treatment


title: HOMbr008-06.r2

description: pooled deseeded grape berries


title: RHH3035 (scRNA-seq)

description: Resistant


title: RHH3158 (scRNA-seq)

description: Holiday


title: HOMwa_avg009-06.r3

description: pooled deseeded grape berries


title: RHH3033 (scRNA-seq)

description: Resistant


title: RHH3032 (scRNA-seq)

description: Resistant


title: RHH3034 (scRNA-seq)

description: Resistant


title: RHH3031 (scRNA-seq)

description: Resistant


title: RHH3030 (scRNA-seq)

description: Resistant


title: HOMbr007-06.r1

description: pooled deseeded grape berries


title: HOMab008-06.r2

description: pooled deseeded grape berries

source_name: Deseeded grape berries sampled 6 hours post abscisic acid  treatment


title: RHH3029 (scRNA-seq)

description: Resistant


title: RHH3037 (scRNA-seq)

description: Resistant


title: RHH3028 (scRNA-seq)

description: Resistant


title: HOMab007-06.r1

description: pooled deseeded grape berries


title: RHH3027 (scRNA-seq)

description: Resistant


title: HOMey008-06.r2

description: pooled deseeded grape berries

source_name: Deseeded grape berries sampled 6 hours post ethephon treatment


title: HOMey009-06.r3

description: pooled deseeded grape berries


title: RHH3026 (scRNA-seq)

description: Resistant


title: RHH3025 (scRNA-seq)

description: Resistant


title: HOMab009-06.r3

description: pooled deseeded grape berries


title: HOMeh009-06.r3

description: pooled deseeded grape berries

source_name: Deseeded grape berries sampled 6 hours post ethanol treatment


title: RHH3023 (scRNA-seq)

description: Resistant


title: HOMeh008-06.r2

description: pooled deseeded grape berries


title: HOMeh007-06.r1

description: pooled deseeded grape berries


title: HOMwa008-06.r2

description: pooled deseeded grape berries

source_name: Deseeded grape berries sampled 6 hours post water treatment


title: RHH3021 (scRNA-seq)

description: Resistant


title: RHH3020 (scRNA-seq)

description: Resistant


title: RHH3019 (scRNA-seq)

description: Resistant


title: HOMwa009-06.r3

description: pooled deseeded grape berries


title: HOMwa007-06.r1

description: pooled deseeded grape berries


title: RHH3018 (scRNA-seq)

description: Resistant


title: RHH3016 (scRNA-seq)

description: Resistant


title: RHH3015 (scRNA-seq)

description: Resistant


title: RHH3017 (scRNA-seq)

description: Resistant


title: RHH3022 (scRNA-seq)

description: Resistant


title: RHH3014 (scRNA-seq)

description: Holiday


title: SIB02_bl001.t11.r1

description: gene expression data from a deseeded blush single berry taken from a bunch at veraison

source_name: blush grape berry taken at veraison, rep 1

label_protocol: Affymetrix Two Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labelling kit


title: SIB02_bl005.t11.r2

source_name: blush grape berry taken at veraison, rep 2


title: RHH3066 (scRNA-seq)

description: Resistant


title: HOMey007-06.r1

description: pooled deseeded grape berries


title: RHH3013 (scRNA-seq)

description: Holiday


title: RHH3012 (scRNA-seq)

description: Holiday


title: RHH3011 (scRNA-seq)

description: Holiday


title: SIB02_sg009.t11.r2

description: gene expression data from a deseeded soft green single berry taken from a bunch at veraison

source_name: soft green grape berry taken at veraison, rep 2


title: SIB02_sg008.t11.r1

source_name: soft green grape berry taken at veraison, rep 1


title: SIB02_re001.t11.r1

description: gene expression data from a deseeded red single berry taken from a bunch at veraison

source_name: soft red grape berry taken at veraison, rep 1


title: RHH3010 (scRNA-seq)

description: Holiday


title: Preveraison berry (5_6 weeks post flowering), 1 hour after heat shock (HSPpre004_06.t2.r2)

source_name: preveraison berry (5_6 weeks post flowering), 1 hour after heat shock


title: SIB02_hg004.t11.r2

description: gene expression data from a deseeded hard green single berry taken from a bunch at veraison

source_name: hard green, very firm grape berry taken at veraison, rep 2


title: SIB02_hg005.t11.r1

source_name: hard green, very firm grape berry taken at veraison, rep 3


title: RHH3009 (scRNA-seq)

description: Holiday


title: SIB02_re002.t11.r2

source_name: soft red grape berry taken at veraison, rep 2


title: SIB02_hg003.t11.r1

source_name: hard green, very firm grape berry taken at veraison, rep 1


title: RHH3008 (scRNA-seq)

description: Holiday


title: RHH3007 (scRNA-seq)

description: Holiday


title: 9hs

city: Kraków

first: Artur

last: Gurgul

address: Rędzina 1C

department: Center for Experimental and Innovative Medicine

country: Poland

institute: University of Agriculture in Krakow

description:
microRNA
DE_hs.csv
Raw counts hs.csv

data_processing:
demultiplexing: bcl2fastq
quality control: FastQC
trimming off the 3' adapter sequences: UEA sRNA WorkbenchV3.2
filtering: UEA sRNA WorkbenchV3.2; parameters: 17-25 nt in length, minimum abundance of at least 6 supporting reads, tRNA and rRNA sequences excluded.
mapping: the filtered reads were mapped to Sscrofa10.2 genome and miRBase 21.0, using miRCat tool embeded in UEA sRNA WorkbenchV3.2. The following parameters were applied - default animal parameters, except for: minimum abundance (6 or greater), minimum length (17 nt) and maximum length (25 nt).
differential expression analysis: DESeq2 (a Bioconductor R-project package)
Genome_build: Sscrofa10.2
Supplementary_files_format_and_content: Raw counts table for detected miRNA (CSV format) and results of differential expression analysis (DE) performed with DESeq2 software (CSV format)for each breed separately: hs-Hampshire, ws-Large White, p-Pietrain. DESeq2 output includes comparisons between animals with thick and thin subcutaneous fat within each breed.

organism: Sus scrofa

source_name: Hampshire - thin subcutaneous fat

extract_protocol:
The quality and quantity of the obtained RNA were checked on a NanoDrop 2000 spectrophotometer (Thermo Scientific; Wilmington, USA) and on a TapeStation 2200 instrument (RNAScreen Tape, Agilent, Perlan Technologies, Poland). Samples with RIN above 7.5 were used to construct libraries.
microRNA libraries were prepared with the use of NEBNext Multiplex Small RNA Library Prep Set for Illumina (New England Biolabs; E7300L), according the standard protocol. Briefly, the first step was the 3’ adaptor ligation, followed by hybridization with the Reverse Transcription Primer and ligation with the 5’ adaptor. The RNA-adaptor ligation products were subjected to reverse transcription. Then, PCR amplification with 12 different indexed primers was performed to allow further multiplexing of the samples. The amplified samples were purified and size-selected on a Novex 6% TBE PAGE gel (Invitrogen). After the overnight elution from the gel, the libraries were precipitated and purified with ethanol (POCH). Next, they were subjected to a concentration measurement with a Qubit 2.0 Fluorometer (Thermo Fisher Scientific) and a size assessment with a 2200 TapeStation instrument (Agilent). The libraries were stored at -20°C at 10nM concentration until further use.

treatment_protocol: Immediately after slaughter, tissue samples were collected into RNAlater solution (Ambion, Thermo Fisher Scientific) and stored at -20°C

tag: breed

value: Hampshire

tag: tissue

value: subcutaneous fat

tag: loin weight

value: Hampshire - thin subcutaneous fat

tag: gender

value: female

tag: age

value: 6 months


title: 13hs

description:
microRNA
DE_hs.csv
Raw counts hs.csv

source_name: Hampshire - thick subcutaneous fat

value: Hampshire - thick subcutaneous fat


title: SIB02_hg002.t11.r2

source_name: hard green, less firm grape berry taken at veraison, rep 2


title: SIB02_hg001.t11.r1

source_name: hard green, less firm grape berry taken at veraison, rep1


title: SIB02_hg007.t11.r2

source_name: hard green, very firm grape berry taken at veraison, rep 4


title: RHH3005 (scRNA-seq)

description: Holiday


title: 4hs

description:
microRNA
DE_hs.csv
Raw counts hs.csv


title: DIUpo10am.t15.24hr.r2

description: Deseeded grape berry 14 weeks post flowering

source_name: Grape berry 14 weeks post flowering, collected at 10am, rep 2


title: DIUpo10am.t15.24hr.r1

source_name: Grape berry 14 weeks post flowering, collected at 10am, rep 1


title: RHH3004 (scRNA-seq)

description: Holiday


title: 3hs

description:
microRNA
DE_hs.csv
Raw counts hs.csv


title: RHH3002 (scRNA-seq)

description: Holiday


title: 2hs

description:
microRNA
DE_hs.csv
Raw counts hs.csv


title: RHH3000 (scRNA-seq)

description: Holiday


title: DIUpo7am.t15.r2

source_name: Grape berry 14 weeks post flowering, collected at 7am, rep 2


title: RHH2999 (scRNA-seq)

description: Holiday


title: 8hs

description:
microRNA
DE_hs.csv
Raw counts hs.csv


title: DIUpo4am.t15.r2

source_name: Grape berry 14 weeks post flowering, collected at 4am, rep 2


title: DIUpo7am.t15.r1

source_name: Grape berry 14 weeks post flowering, collected at 7am, rep 1


title: RHH2998 (scRNA-seq)

description: Holiday


title: 1hs

description:
microRNA
DE_hs.csv
Raw counts hs.csv


title: 16ws

description:
microRNA
DE_ws.csv
Raw counts ws.csv

source_name: Large White - thick subcutaneous fat

value: Large White

value: Large White - thick subcutaneous fat


title: RHH2995 (scRNA-seq)

description: Holiday


title: RHH2994 (scRNA-seq)

description: Holiday


title: 15ws

description:
microRNA
DE_ws.csv
Raw counts ws.csv

source_name: Large White - thin subcutaneous fat

value: Large White - thin subcutaneous fat


title: DIUpo4am.t15.r1

source_name: Grape berry 14 weeks post flowering, collected at 4am, rep 1


title: RHH3003 (scRNA-seq)

description: Holiday


title: RHH3038 (scRNA-seq)

description: Resistant


title: RHH3006 (scRNA-seq)

description: Holiday


title: RHH3001 (scRNA-seq)

description: Holiday


title: RHH2993 (scRNA-seq)

description: Holiday


title: DIUpo1am.t15.r2

source_name: Grape berry 14 weeks post flowering, collected at 1am, rep 2


title: 14ws

description:
microRNA
DE_ws.csv
Raw counts ws.csv


title: RHH2991 (scRNA-seq)

description: Holiday


title: RHH2990 (scRNA-seq)

description: Holiday


title: DIUpo10pm.t15.r2

source_name: Grape berry 14 weeks post flowering, collected at 10pm, rep 2


title: 13ws

description:
microRNA
DE_ws.csv
Raw counts ws.csv


title: RHH2989 (scRNA-seq)

description: Holiday


title: RHH2997 (scRNA-seq)

description: Holiday


title: RHH2996 (scRNA-seq)

description: Holiday


title: 12ws

description:
microRNA
DE_ws.csv
Raw counts ws.csv


title: RHH2988 (scRNA-seq)

description: Holiday


title: DIUpo1am.t15.r1

source_name: Grape berry 14 weeks post flowering, collected at 1am, rep 1


title: DIUpo10pm.t15.r1

source_name: Grape berry 14 weeks post flowering, collected at 10pm, rep 1


title: 11ws

description:
microRNA
DE_ws.csv
Raw counts ws.csv


title: RHH2987 (scRNA-seq)

description: Holiday


title: DIUpo7pm.t15.r2

source_name: Grape berry 14 weeks post flowering, collected at 7pm, rep 2


title: RHH2992 (scRNA-seq)

description: Holiday


title: RHH2985 (scRNA-seq)

description: Holiday


title: 9ws

description:
microRNA
DE_ws.csv
Raw counts ws.csv


title: RHH2984 (scRNA-seq)

description: Holiday


title: RHH2982 (scRNA-seq)

description: Holiday


title: RHH2983 (scRNA-seq)

description: Holiday


title: 8ps

description:
microRNA
DE_ps.csv
Raw counts ps.csv

source_name: Pietrain - thin subcutaneous fat

value: Pietrain

value: Pietrain - thin subcutaneous fat


title: RHH2980 (scRNA-seq)

description: Holiday

value: oral squamous cell carcinoma (OSCC)


title: RHH2981 (scRNA-seq)

description: Holiday

value: Primary


title: RHH2979 (scRNA-seq)

description: Holiday


title: DIUpo4pm.t15.r2

source_name: Grape berry 14 weeks post flowering, collected at 4pm, rep 2


title: 5ps

description:
microRNA
DE_ps.csv
Raw counts ps.csv


title: 10ws

description:
microRNA
DE_ws.csv
Raw counts ws.csv


title: RHH2978 (scRNA-seq)

description: Holiday


title: 6ps

description:
microRNA
DE_ps.csv
Raw counts ps.csv


title: RHH2976 (scRNA-seq)

description: Holiday


title: RHH2974 (scRNA-seq)

description: Holiday


title: DIUpo4pm.t15.r1

source_name: Grape berry 14 weeks post flowering, collected at 4pm, rep 1


title: RHH2977 (scRNA-seq)

description: Holiday


title: RHH2986 (scRNA-seq)

description: Holiday


title: DIUpo7pm.t15.r1

source_name: Grape berry 14 weeks post flowering, collected at 7pm, rep 1


title: DIUpo1pm.t15.r1

source_name: Grape berry 14 weeks post flowering, collected at 1pm, rep 1


title: DIUpo10am.t15.r2

source_name: Grape berry 14 weeks post flowering, collected at 10am, rep 2


title: RHH2975 (scRNA-seq)

description: Holiday


title: RHH2973 (scRNA-seq)

description: Holiday


title: 3ps

description:
microRNA
DE_ps.csv
Raw counts ps.csv

source_name: Pietrain - thick subcutaneous fat

value: Pietrain - thick subcutaneous fat


title: RHH2972 (scRNA-seq)

description: Holiday

value: Holiday


title: DIUpo10am.t15.r1

source_name: Grape berry 14 weeks post flowering, collected at 10am, rep 1


title: RHH2971 (scRNA-seq)

description: Holiday


title: DIUpo1pm.t15.r2

source_name: Grape berry 14 weeks post flowering, collected at 1pm, rep 2


title: 2ps

description:
microRNA
DE_ps.csv
Raw counts ps.csv


title: RHH2970 (scRNA-seq)

description: Holiday


title: RHH2969 (scRNA-seq)

description: Holiday


title: HOMeh_avg009-06.r3

description: pooled deseeded grape berries

source_name: Deseeded grape berries sampled 6 hours post ethanol_aminoethoxyvinylglycine treatment


title: HOMeh_avg008-06.r2

description: pooled deseeded grape berries


title: 4ps

description:
microRNA
DE_ps.csv
Raw counts ps.csv


title: 1ps

description:
microRNA
DE_ps.csv
Raw counts ps.csv


title: DIUpe9am.t4.24hr.r2

description: Deseeded grape berry 3 weeks post flowering

source_name: Grape berry 3 weeks post flowering, collected at 9am, rep 2


title: DIUpe6am.t4.r2

source_name: Grape berry 3 weeks post flowering, collected at 6am, rep 2


title: RHH2968 (scRNA-seq)

description: Holiday


title: RHH2967 (scRNA-seq)

description: Holiday


title: DIUpe9am.t4.24hr.r1

source_name: Grape berry 3 weeks post flowering, collected at 9am, rep 1


title: RHH2966 (scRNA-seq)

description: Holiday


title: RHH2965 (scRNA-seq)

description: Holiday


title: RHH2961 (scRNA-seq)

description: Holiday


title: RHH2963 (scRNA-seq)

description: Holiday


title: RHH2962 (scRNA-seq)

description: Holiday


title: RHH2964 (scRNA-seq)

description: Holiday


title: RHH2958 (scRNA-seq)

description: Holiday


title: RHH2959 (scRNA-seq)

description: Holiday


title: RHH2956 (scRNA-seq)

description: Holiday


title: RHH2957 (scRNA-seq)

description: Holiday


title: RHH2955 (scRNA-seq)

description: Holiday


title: DIUpemidnight.t4.r2

source_name: Grape berry 3 weeks post flowering, collected at midnight, rep 2


title: DIUpe6am.t4.r1

source_name: Grape berry 3 weeks post flowering, collected at 6am, rep 1


title: DIUpe3am.t4.r1

source_name: Grape berry 3 weeks post flowering, collected at 3am, rep 1


title: RHH2953 (scRNA-seq)

description: Holiday


title: RHH2954 (scRNA-seq)

description: Holiday


title: DIUpemidnight.t4.r1

source_name: Grape berry 3 weeks post flowering, collected at midnight, rep 1


title: DIUpe9pm.t4.r1

source_name: Grape berry 3 weeks post flowering, collected at 9pm, rep 1


title: RHH2950 (scRNA-seq)

description: Holiday


title: DIUpe9pm.t4.r2

source_name: Grape berry 3 weeks post flowering, collected at 9pm, rep 2


title: RHH2952 (scRNA-seq)

description: Holiday


title: RHH2951 (scRNA-seq)

description: Holiday


title: RHH2960 (scRNA-seq)

description: Holiday


title: DIUpe3am.t4.r2

source_name: Grape berry 3 weeks post flowering, collected at 3am, rep 2


title: DIUpe6pm.t4.r2

source_name: Grape berry 3 weeks post flowering, collected at 6pm, rep 2


title: RHH2949 (scRNA-seq)

description: Holiday


title: RHH2947 (scRNA-seq)

description: Holiday


title: RHH2945 (scRNA-seq)

description: Holiday


title: DIUpe6pm.t4.r1

source_name: Grape berry 3 weeks post flowering, collected at 6pm, rep 1


title: RHH3024 (scRNA-seq)

description: Resistant

value: Metastatic

value: Resistant


title: RHH2943 (scRNA-seq)

description: Holiday


title: RHH2940 (scRNA-seq)

description: Holiday


title: RHH2938 (scRNA-seq)

description: Holiday


title: RHH2939 (scRNA-seq)

description: Holiday


title: RHH2941 (scRNA-seq)

description: Holiday


title: DIUpe3pm.t4.r2

source_name: Grape berry 3 weeks post flowering, collected at 3pm, rep 2


title: DIUpe12noont4.r1

source_name: Grape berry 3 weeks post flowering, collected at 12 noon, rep 1


title: DIUpe3pm.t4.r1

source_name: Grape berry 3 weeks post flowering, collected at 3pm, rep 1


title: RHH2937 (scRNA-seq)

description: Holiday


title: DIUpe9am.t4.r2


title: RHH2936 (scRNA-seq)

description: Holiday


title: RHH2934 (scRNA-seq)

description: Holiday


title: DIUpe12noont4.r2

source_name: Grape berry 3 weeks post flowering, collected at 12 noon, rep 2


title: RHH2935 (scRNA-seq)

description: Holiday


title: RHH2933 (scRNA-seq)

description: Holiday


title: RHH2932 (scRNA-seq)

description: Holiday


title: RHH2931 (scRNA-seq)

description: Holiday


title: RHH2942 (scRNA-seq)

description: Holiday


title: RHH2930 (scRNA-seq)

description: Holiday


title: RHH2944 (scRNA-seq)

description: Holiday


title: DIUpe9am.t4.r1


title: RHH2929 (scRNA-seq)

description: Holiday


title: DIU300pm.ln.t17.rep2 (Diurnal and Circadian)

description: Deseeded grape berry 16 weeks post flowering

source_name: Grape berry 16 weeks post flowering, collected at 3.00pm, rep 2, circadian, light depravation

treatment_protocol: light depravation v natural light


title: DIU500am.ln.t17.rep2 (Diurnal and Circadian)

source_name: Grape berry 16 weeks post flowering, collected at 5.00am, rep 2, circadian, light depravation


title: DIU300pm.ln.t17.rep1 (Diurnal and Circadian)

source_name: Grape berry 16 weeks post flowering, collected at 3.00pm, rep 1, circadian, light depravation


title: RHH2925 (scRNA-seq)

description: Holiday


title: RHH2926 (scRNA-seq)

description: Holiday


title: DIU300pm.ln.t5.rep2 (Diurnal and Circadian)

description: Deseeded grape berry 4 weeks post flowering

source_name: Grape berry 4 weeks post flowering, collected at 3.00pm, rep 2, circadian, light depravation


title: RHH2924 (scRNA-seq)

description: Holiday


title: DIU500am.ln.t17.rep1 (Diurnal and Circadian)

source_name: Grape berry 16 weeks post flowering, collected at 5.00am, rep 1, circadian, light depravation


title: DIU300pm.ln.t5.rep1 (Diurnal and Circadian)

source_name: Grape berry 4 weeks post flowering, collected at 3.00pm, rep 1, circadian, light depravation


title: RHH2923 (scRNA-seq)

description: Holiday


title: RHH2922 (scRNA-seq)

description: Holiday


title: RHH2919 (scRNA-seq)

description: Holiday


title: RHH2920 (scRNA-seq)

description: Holiday


title: DIU500am.ln.t5.rep2 (Diurnal and Circadian)

source_name: Grape berry 4 weeks post flowering, collected at 5.00am, rep 2, circadian, light depravation


title: RHH2463 (scRNA-seq)

description: Resistant


title: RHH2928 (scRNA-seq)

description: Holiday


title: RHH2462 (scRNA-seq)

description: Resistant


title: RHH2461 (scRNA-seq)

description: Resistant


title: RHH2460 (scRNA-seq)

description: Resistant


title: DIU500am.ln.t5.rep1 (Diurnal and Circadian)

source_name: Grape berry 4 weeks post flowering, collected at 5.00am, rep 1, circadian, light depravation


title: RHH2459 (scRNA-seq)

description: Resistant


title: DIU300pm.li.t17.rep2 (Diurnal and Circadian)

source_name: Grape berry 16 weeks post flowering, collected at 3.00pm, rep 2, diurnal


title: RHH2927 (scRNA-seq)

description: Holiday


title: DIU300pm.li.t17.rep1 (Diurnal and Circadian)

source_name: Grape berry 16 weeks post flowering, collected at 3.00pm, rep 1, diurnal


title: DIU500am.li.t17.rep2 (Diurnal and Circadian)

source_name: Grape berry 16 weeks post flowering, collected at 5.00am, rep 2, diurnal


title: RHH2457 (scRNA-seq)

description: Resistant


title: RHH2456 (scRNA-seq)

description: Resistant


title: RHH2455 (scRNA-seq)

description: Resistant


title: RHH2454 (scRNA-seq)

description: Resistant


title: DIU500am.li.t17.rep1 (Diurnal and Circadian)

source_name: Grape berry 16 weeks post flowering, collected at 5.00am, rep 1, diurnal


title: RHH2453 (scRNA-seq)

description: Resistant


title: RHH2921 (scRNA-seq)

description: Holiday


title: RHH2452 (scRNA-seq)

description: Resistant


title: RHH2450 (scRNA-seq)

description: Resistant


title: RHH2451 (scRNA-seq)

description: Resistant


title: RHH2447 (scRNA-seq)

description: Resistant


title: RHH2446 (scRNA-seq)

description: Resistant


title: RHH2448 (scRNA-seq)

description: Resistant


title: RHH2445 (scRNA-seq)

description: Resistant


title: RHH2444 (scRNA-seq)

description: Resistant


title: RHH2458 (scRNA-seq)

description: Resistant


title: RHH2443 (scRNA-seq)

description: Resistant


title: RHH2442 (scRNA-seq)

description: Resistant


title: RHH2440 (scRNA-seq)

description: Resistant


title: RHH2441 (scRNA-seq)

description: Resistant


title: RHH2439 (scRNA-seq)

description: Resistant


title: RHH2437 (scRNA-seq)

description: Resistant


title: RHH2438 (scRNA-seq)

description: Resistant


title: RHH2449 (scRNA-seq)

description: Resistant


title: RHH2436 (scRNA-seq)

description: Resistant


title: RHH2433 (scRNA-seq)

description: Resistant


title: RHH2434 (scRNA-seq)

description: Resistant


title: RHH2435 (scRNA-seq)

description: Resistant


title: RHH2432 (scRNA-seq)

description: Resistant


title: RHH2431 (scRNA-seq)

description: Resistant


title: RHH2429 (scRNA-seq)

description: Resistant


title: RHH2430 (scRNA-seq)

description: Resistant


title: RHH2427 (scRNA-seq)

description: Resistant


title: RHH2426 (scRNA-seq)

description: Resistant


title: DIU1000am.li.t17.rep1

source_name: Grape berry 16 weeks post flowering, collected at 10am, rep 1


title: DIU300pm.li.t17.rep1

source_name: Grape berry 16 weeks post flowering, collected at 3pm, rep 1


title: DIU300pm.li.t5.rep1 (Diurnal and Circadian)

source_name: Grape berry 4 weeks post flowering, collected at 3.00pm, rep 1, diurnal


title: DIU650pm.li.t17.rep1

source_name: Grape berry 16 weeks post flowering, collected at 6.50pm, rep 1


title: DIU300pm.li.t17.rep2

source_name: Grape berry 16 weeks post flowering, collected at 3pm, rep 2


title: DIU1000am.li.t17.rep2

source_name: Grape berry 16 weeks post flowering, collected at 10am, rep 2


title: DIU300pm.li.t5.rep2

source_name: Grape berry 4 weeks post flowering, collected at 3pm, rep 2


title: DIU1000am.li.t5.rep2

source_name: Grape berry 4 weeks post flowering, collected at 10am, rep2


title: DIU300pm.li.t5.rep2 (Diurnal and Circadian)

source_name: Grape berry 4 weeks post flowering, collected at 3.00pm, rep 2, diurnal


title: DIU500am.li.t17.rep2

source_name: Grape berry 16 weeks post flowering, collected at 5am, rep 2


title: DIUmidnight.li.t17.rep2

source_name: Grape berry 16 weeks post flowering, collected at midnight, rep 2


title: DIU650pm.li.t17.rep2

source_name: Grape berry 16 weeks post flowering, collected at 6.50pm, rep2


title: DIU500am.li.t5.rep2 (Diurnal and Circadian)

source_name: Grape berry 4 weeks post flowering, collected at 5.00am, rep 2, diurnal


title: DIU300pm.li.t5.rep1

source_name: Grape berry 4 weeks post flowering, collected at 3pm, rep 1


title: DIU500am.li.t17.rep1

source_name: Grape berry 16 weeks post flowering, collected at 5am, rep 1


title: DIUmidnight.li.t17.rep1

source_name: Grape berry 16 weeks post flowering, collected at midnight, rep 1


title: DIU500am.li.t5.rep1 (Diurnal and Circadian)

source_name: Grape berry 4 weeks post flowering, collected at 5.00am, rep 1, diurnal


title: RHH2428 (scRNA-seq)

description: Resistant


title: WT oocyte rep2

city: Beijing

first: Wenjie

last: Shu

address: Taiping Road 27

country: China

institute: Beijing Institute of Radiation Medicine

library_source: genomic

data_processing:
fastq files are processed by trim-galore to remove adapters
The clean data are mapped to mm10 reference genome with Bismark as single read with default parameters
bedgraph files describing methylation level of each CpG sites are extracted from bam files with Bismark toolkits
Genome_build: mm10
Supplementary_files_format_and_content: processed data are presented as bedGraph files. Each row describes a sequenced CpG sites. The first three column describe the position of CpG sites and the fourth column describes the methylation level

molecule: genomic DNA

organism: Mus musculus

source_name: oocyte

growth_protocol: mice four-week of age were purchased from Charles River Laboratories China Inc, and were housed in ventilated cages on a 12:12‐h light‐dark cycle at constant temperature (22°C) and under controlled humidity.

extract_protocol:
Mice received an injection of hCG 2 days after PMSG priming and were then mated overnight with males of proven fertility. Zygotes were obtained by flushing the oviducts 24 hours after the hCG injection, and cultured in KSOM medium (Millipore) for subsequent analysis.
Briefly, samples were lysed in lysis buffer (10 mM Tris-HCl pH 7.4 and 2% SDS) with 0.5 μl protease K for 1 h at 37 °C. Bisulfite conversion was performed on cell lysates using the EZ DNA Methylation-Gold Kit (Zymo Research) according to the manufacturer’s instructions. The converted DNA was processed for library construction, and the quality and quantity of the purified library assessed using Agilent Bioanalyzer and StepOnePlus Real-Time PCR System (Applied Biosystems).

treatment_protocol: Cas9 mRNA/sgRNA injection to zygotes obtained by mating of C57BL/6J males with superovulated C57BL/6J females was also performed as described previously 1. Male mice with a large deletion were chosen as founder animals, and backcrossed to establish a germline transmission line. Heterozygous deletion mice were intercrossed to obtain homozygous mice (StellaΔ/Δ).

tag: strain

tag: genotype

value: WT

value: oocyte


title: RHH2425 (scRNA-seq)

description: Resistant


title: StellaΔ oocyte rep2

value: stella delta


title: WT oocyte rep1


title: RHH2422 (scRNA-seq)

description: Resistant


title: StellaΔ oocyte rep1


title: RHH2421 (scRNA-seq)

description: Resistant


title: WT ♂ pronucleus rep2

source_name: ♂ pronucleus

value: male pronucleus


title: RHH2419 (scRNA-seq)

description: Resistant


title: RHH2418 (scRNA-seq)

description: Resistant


title: RHH2416 (scRNA-seq)

description: Resistant


title: RHH2415 (scRNA-seq)

description: Resistant


title: RHH2417 (scRNA-seq)

description: Resistant


title: RHH2414 (scRNA-seq)

description: Resistant


title: RHH2424 (scRNA-seq)

description: Resistant


title: RHH2948 (scRNA-seq)

description: Holiday


title: RHH2423 (scRNA-seq)

description: Resistant


title: RHH2413 (scRNA-seq)

description: Resistant


title: RHH2411 (scRNA-seq)

description: Resistant


title: WT ♀ pronucleus rep2

source_name: ♀ pronucleus

value: female pronucleus


title: WT ♂ pronucleus rep1


title: RHH2412 (scRNA-seq)

description: Resistant


title: WT ♀ pronucleus rep1


title: RHH2946 (scRNA-seq)

description: Holiday


title: DIU500am.li.t5.rep1

source_name: Grape berry  weeks post flowering, collected at 5am, rep 1


title: DIUmidnight.li.t5.rep2

source_name: Grape berry 4 weeks post flowering, collected at midnight, rep 2


title: StellaΔ ♂ pronucleus rep2


title: RHH2410 (scRNA-seq)

description: Resistant


title: RHH2420 (scRNA-seq)

description: Resistant


title: DIU1000am.li.t5.rep1

source_name: Grape berry 4 weeks post flowering, collected at 10am, rep 1


title: StellaΔ ♂ pronucleus rep1


title: BUD01AP2_06.ap.r2

description: pooled apical shoot meristems from several canes

source_name: latent buds from green canes, apical shoot meristem

label_protocol: Affymetrix Two Cycle cDNA synthesis kit, Affymetrix GeneChip Sample Cleanup kit, Affymetrix IVT labeling kit

growth_protocol: green latent buds were collected from bunches on field grown plants


title: DIU750pm.li.t5.rep1

source_name: Grape berry 4 weeks post flowering, collected at 7.50pm, rep 1


title: DIUmidnight.li.t5.rep1

source_name: Grape berry 4 weeks post flowering, collected at midnight, rep 1


title: RHH2409 (scRNA-seq)

description: Resistant


title: DIU500am.li.t5.rep2

source_name: Grape berry 4 weeks post flowering, collected at 5am, rep 2


title: DIU750pm.li.t5.rep2

source_name: Grape berry 4 weeks post flowering, collected at 7.50pm, rep 2


title: StellaΔ ♀ pronucleus rep2


title: RHH2407 (scRNA-seq)

description: Resistant


title: RHH2405 (scRNA-seq)

description: Resistant


title: StellaΔ ♀ pronucleus rep1


title: RHH2404 (scRNA-seq)

description: Resistant


title: RHH2406 (scRNA-seq)

description: Resistant


title: BUD01AP1_06.ap.r1


title: RHH2402 (scRNA-seq)

description: Resistant


title: RHH2401 (scRNA-seq)

description: Resistant


title: RHH2400 (scRNA-seq)

description: Resistant


title: RHH2398 (scRNA-seq)

description: Resistant


title: RHH2397 (scRNA-seq)

description: Resistant


title: RHH2403 (scRNA-seq)

description: Resistant


title: RHH2396 (scRNA-seq)

description: Resistant


title: BUD01024_06.b12.r2

description: pooled green latent buds from several canes

source_name: latent buds from green canes, bud position 12


title: RHH2408 (scRNA-seq)

description: Resistant


title: FF IAVdelNS1 [Sample 21]

city: New York

first: Julie

middle: Anne

last: Eggenberger

state: NY

address: 1 Gustave L. Levy Pl

department: Microbiology

country: USA

institute: Icahn School of Medicine at Mount Sinai

description:
DNase-treated
TableS3_Differential_expression.xlsx
TableS3_read_counts.xlsx

data_processing:
Illumina software was used for basecalling
RNA-Seq reads were trimmed for adaptor sequences and mapped to the whole human (h19) or murine (mm10) genome using STAR aligner
Merged read counts were obtained using the Illumina software RNA Express
Genome_build: UCSC h19 or UCSC mm10
Supplementary_files_format_and_content: All processed files were downloaded as tab-delimited text files and saved as .xlsx files

source_name: Fibroblasts

growth_protocol: iPS cells were cultured in E8 and StemFlex media,FFs and 293Ts were cultured in DMEM/10%FBS,mES cells were cultured in 2i media

extract_protocol:
RNA was harvested using Trizol reagent.
Libraries were prepared using the TruSeq RNA Library Preparation Kit version 2 (Illumina) according to the manufacturer’s instructions.  In brief, 1ug of total mRNA was purified using oligo-dT RNA purification beads.  Eluted RNA was fragmented and reverse transcribed, followed by a second strand synthesis, end repair, A-tailing, adaptor ligation and PCR amplification.  Libraries were quantified using a universal complete KAPA Library Quantification Kit (KAPA Biosystems).  Pooled libraries were sequenced on an Illumina MiSeq or an Illumina NextSeq platform.

value: Primary foreskin fibroblasts

value: low passage

tag: treatment

value: infected with IAVdelNS1 for 8h


title: FF IFNB [Sample 24]

value: treated with human recombinant IFNB for 8h


title: RHH2399 (scRNA-seq)

description: Resistant


title: FF IFNB [Sample 23]


title: FF IAVdelNS1 [Sample 22]


title: RHH2395 (scRNA-seq)

description: Resistant


title: RHH2394 (scRNA-seq)

description: Resistant


title: BUD01023_06.b12.r1


title: FF mock [Sample 20]

description:
DNase-treated
TableS3_conservedISG_RPM.xlsx
TableS3_Differential_expression.xlsx
TableS3_read_counts.xlsx

value: untreated


title: BUD01021_06.b11.r1

source_name: latent buds from green canes, bud position 11


title: BUD01019_06.b10.r1

source_name: latent buds from green canes, bud position 10


title: FF mock [Sample 19]


title: RHH2392 (scRNA-seq)

description: Resistant


title: RHH2391 (scRNA-seq)

description: Resistant


title: iPSC IFNB [Sample 18]

source_name: Induced Pluripotent Stem Cells

value: iPSC 553 clone 1


title: BUD01018_06.b9.r2

source_name: latent buds from green canes, bud position 9


title: RHH2390 (scRNA-seq)

description: Resistant

value: oral squamous cell carcinoma (OSCC)


title: iPSC IFNB [Sample 17]


title: RHH2388 (scRNA-seq)

description: Resistant

value: Primary


title: iPSC IAVdelNS1 [Sample 16]


title: RHH2389 (scRNA-seq)

description: Resistant


title: RHH2387 (scRNA-seq)

description: Resistant


title: RHH2386 (scRNA-seq)

description: Resistant


title: RHH2385 (scRNA-seq)

description: Resistant


title: RHH2384 (scRNA-seq)

description: Resistant


title: RHH2383 (scRNA-seq)

description: Resistant


title: RHH2393 (scRNA-seq)

description: Resistant


title: iPSC IAVdelNS1 [Sample 15]


title: RHH2382 (scRNA-seq)

description: Resistant


title: iPSC mock [Sample 13]


title: iPSC mock [Sample 14]


title: RHH2381 (scRNA-seq)

description: Resistant


title: RHH2380 (scRNA-seq)

description: Resistant


title: iPSC  [Sample 12]

description:
DNase-treated
TableS2_miRNA_reads.xlsx

value: iPS-derived foreskin fibroblasts

value: transfected with pppRNA


title: RHH2378 (scRNA-seq)

description: Resistant


title: RHH2379 (scRNA-seq)

description: Resistant


title: iPSCRNA [Sample 11]

description:
DNase-treated
TableS2_miRNA_reads.xlsx
TableS2_pppRNA_treated_iPS.xlsx


title: RHH2376 (scRNA-seq)

description: Resistant


title: RHH2375 (scRNA-seq)

description: Resistant


title: BUD01017_06.b9.r1


title: ReBJ  [Sample 10]

description:
DNase-treated
TableS2_miRNA_reads.xlsx

source_name: Re-derived Fibroblasts

value: FF-derived induced pluripotent stem cells


title: BUD01013_06.b7.r1

source_name: latent buds from green canes, bud position 7


title: BUD01016_06.b8.r2

source_name: latent buds from green canes, bud position 8


title: BUD01015_06.b8.r1


title: BUD01012_06.b6.r2

source_name: latent buds from green canes, bud position 6


title: BUD01011_06.b6.r1


title: RHH2374 (scRNA-seq)

description: Resistant

value: Resistant


title: ReBJRNA [Sample 9]

description:
DNase-treated
TableS2_miRNA_reads.xlsx
TableS2_pppRNA_treated_reFF.xlsx


title: BUD01014_06.b7.r2


title: RHH2373 (scRNA-seq)

description: Resistant


title: BJ  [Sample 8]

description:
DNase-treated
TableS2_miRNA_reads.xlsx


title: RHH2372 (scRNA-seq)

description: Resistant


title: BUD01022_06.b11.r2


title: RHH2370 (scRNA-seq)

description: Resistant


title: BJRNA [Sample 7]

description:
DNase-treated
TableS2_miRNA_reads.xlsx
TableS2_pppRNA_treated_FF.xlsx


title: RHH2369 (scRNA-seq)

description: Resistant


title: RHH2368 (scRNA-seq)

description: Resistant


title: RHH2377 (scRNA-seq)

description: Resistant


title: BUD01006_06.b3.r2

source_name: latent buds from green canes, bud position 3


title: reFF-2 [Sample 6]

description:
DNase-treated
TableS1_PCA_Data.xlsx
TableS1_read_counts.xlsx


title: RHH2367 (scRNA-seq)

description: Sensitive

value: Metastatic

value: Sensitive


title: reFF-1 [Sample 5]


title: RHH2365 (scRNA-seq)

description: Sensitive


title: BUD01020_06.b10.r2


title: BUD01010_06.b5.r2

source_name: latent buds from green canes, bud position 5


title: RHH2364 (scRNA-seq)

description: Sensitive


title: RHH2363 (scRNA-seq)

description: Sensitive


title: RHH2362 (scRNA-seq)

description: Sensitive


title: iPS-2 [Sample 4]


title: BUD01005_06.b3.r1


title: iPS-1 [Sample 3]


title: RHH2366 (scRNA-seq)

description: Sensitive


title: BUD01009_06.b5.r1


title: FF-2 [Sample 2]


title: RHH2360 (scRNA-seq)

description: Sensitive


title: RHH2359 (scRNA-seq)

description: Sensitive


title: BUD01008_06.b4.r2

source_name: latent buds from green canes, bud position 4


title: BUD01004_06.b2.r2

source_name: latent buds from green canes, bud position 2


title: RHH2358 (scRNA-seq)

description: Sensitive


title: BUD01001_06.b1r1

source_name: latent buds from green canes, bud position 1


title: FF-2 [Sample 1]


title: RHH2357 (scRNA-seq)

description: Sensitive


title: RHH2355 (scRNA-seq)

description: Sensitive


title: RHH2354 (scRNA-seq)

description: Sensitive


title: RHH2351 (scRNA-seq)

description: Sensitive


title: RHH2352 (scRNA-seq)

description: Sensitive


title: RHH2348 (scRNA-seq)

description: Sensitive


title: RHH2349 (scRNA-seq)

description: Sensitive


title: RHH2356 (scRNA-seq)

description: Sensitive


title: RHH2347 (scRNA-seq)

description: Sensitive


title: RHH2346 (scRNA-seq)

description: Sensitive


title: RHH2345 (scRNA-seq)

description: Sensitive


title: RHH2344 (scRNA-seq)

description: Sensitive


title: RHH2361 (scRNA-seq)

description: Sensitive


title: RHH2343 (scRNA-seq)

description: Sensitive


title: RHH2342 (scRNA-seq)

description: Sensitive


title: RHH2341 (scRNA-seq)

description: Sensitive


title: RHH2350 (scRNA-seq)

description: Sensitive


title: RHH2339 (scRNA-seq)

description: Sensitive


title: RHH2340 (scRNA-seq)

description: Sensitive


title: BUD01002_06.b1r2

source_name: latent buds from green canes, bud position1


title: RHH2337 (scRNA-seq)

description: Sensitive


title: RHH2336 (scRNA-seq)

description: Sensitive


title: CLAma044_05.t15.rep1

description: Gene expression data from deseeded berries pooled from several bunches

source_name: Grape berry 14 weeks post flowering, machine pruned vines

extract_protocol: A modified RNAeasy RNA extraction method (Qiagen)

treatment_protocol: Spur and machine pruning of vines


title: CLAma050_05.t17.rep1

source_name: Grape berry 16 weeks post flowering, machine pruned vines


title: CLAma051_05.t17.rep2


title: CLAma047_05.t16.rep1

source_name: Grape berry 15 weeks post flowering, machine pruned vines


title: CLAma048_05.t16.rep2


title: BUD01003_06.b2.r1


title: CLAma045_05.t15.rep2


title: CLAma041_05.t14.rep1

source_name: Grape berry 13 weeks post flowering, machine pruned vines


title: CLAma042_05.t14.rep2


title: CLAma036_05.t12.rep2

source_name: Grape berry 11 weeks post flowering, machine pruned vines


title: CLAma035_05.t12.rep1


title: RHH2334 (scRNA-seq)

description: Sensitive


title: RHH2335 (scRNA-seq)

description: Sensitive


title: RHH2331 (scRNA-seq)

description: Sensitive


title: RHH2332 (scRNA-seq)

description: Sensitive


title: CLAma039_05.t13.rep2

source_name: Grape berry 12 weeks post flowering, machine pruned vines


title: CLAma033_05.t11.rep2

source_name: Grape berry 10 weeks post flowering, machine pruned vines


title: RHH2328 (scRNA-seq)

description: Sensitive


title: RHH2330 (scRNA-seq)

description: Sensitive


title: RHH2327 (scRNA-seq)

description: Sensitive


title: RHH2324 (scRNA-seq)

description: Sensitive


title: RHH2323 (scRNA-seq)

description: Sensitive


title: RHH2325 (scRNA-seq)

description: Sensitive


title: RHH2353 (scRNA-seq)

description: Sensitive


title: CLAma032_05.t11.rep1


title: RHH2333 (scRNA-seq)

description: Sensitive


title: CLAma026_05.t9.rep1

source_name: Grape berry 8 weeks post flowering, machine pruned vines


title: RHH2371 (scRNA-seq)

description: Resistant


title: RHH2326 (scRNA-seq)

description: Sensitive


title: CLAma030_05.t10.rep2

source_name: Grape berry 9 weeks post flowering, machine pruned vines


title: CLAma029_05.t10.rep1


title: RHH2338 (scRNA-seq)

description: Sensitive


title: CLAma027_05.t9.rep2


title: RHH2322 (scRNA-seq)

description: Sensitive


title: BUD01007_06.b4.r1


title: RHH2321 (scRNA-seq)

description: Sensitive


title: RHH2320 (scRNA-seq)

description: Sensitive


title: RHH2319 (scRNA-seq)

description: Sensitive


title: RHH2318 (scRNA-seq)

description: Sensitive


title: CLAma024_05.t8.rep2

source_name: Grape berry 7 weeks post flowering, machine pruned vines


title: RHH2315 (scRNA-seq)

description: Sensitive


title: RHH2316 (scRNA-seq)

description: Sensitive


title: RHH2329 (scRNA-seq)

description: Sensitive


title: RHH2317 (scRNA-seq)

description: Sensitive


title: RHH2314 (scRNA-seq)

description: Sensitive


title: RHH2312 (scRNA-seq)

description: Sensitive


title: RHH2310 (scRNA-seq)

description: Sensitive


title: RHH2309 (scRNA-seq)

description: Sensitive


title: RHH2311 (scRNA-seq)

description: Sensitive


title: RHH2306 (scRNA-seq)

description: Sensitive


title: CLAma023_05.t8.rep1


title: RHH2308 (scRNA-seq)

description: Sensitive


title: CLAma017_05.t6.rep1

source_name: Grape berry 5 weeks post flowering, machine pruned vines


title: RHH2304 (scRNA-seq)

description: Sensitive


title: RHH2307 (scRNA-seq)

description: Sensitive


title: RHH2302 (scRNA-seq)

description: Sensitive


title: CLAma020_05.t7.rep1

source_name: Grape berry 6 weeks post flowering, machine pruned vines


title: CLAma012_05.t4.rep2

description: Gene expression data from whole berries pooled from several bunches

source_name: Grape berry 3 weeks post flowering, machine pruned vines


title: RHH2313 (scRNA-seq)

description: Sensitive


title: CLAma011_05.t4.rep1


title: RHH2303 (scRNA-seq)

description: Sensitive


title: CLAma015_05.t5.rep2

source_name: Grape berry 4 weeks post flowering, machine pruned vines


title: RHH2301 (scRNA-seq)

description: Sensitive


title: CLAma014_05.t5.rep1


title: CLAma018_05.t6.rep2


title: RHH2298 (scRNA-seq)

description: Sensitive


title: RHH2297 (scRNA-seq)

description: Sensitive


title: RHH2300 (scRNA-seq)

description: Sensitive


title: CLAma008_05.t3.rep1

source_name: Grape berry 2 weeks post flowering, machine pruned vines