title: PCL-Gl-glu_Rep1

city: Novosibirsk

first: Petr

last: Laktionov

address: Lavrenitev ave 8/2

country: Russia

institute: Institute of molecular and cellular biology SD RAS

data_processing:
Raw data quality control was performed using the FastQC from FASTX-toolkit tool collection (http://hannonlab.cshl.edu/fastx_toolkit/).
RNA-seq reads were aligned to NCBI GRCh38 genome (https://support.illumina.com/sequencing/sequencing_software/igenome.html) using TopHat2 aligner v 2.0.14
FeatureCounts tool from the Subread package was used to count reads to genomic features
Differential expression analysis was performed with DESeq2
To generate RPKM values normalized across all the samples Cuffnorm tool v.2.2.1 was used with geometric normalization method
Genome_build: NCBI GRCh38 genome (https://support.illumina.com/sequencing/sequencing_software/igenome.html)
Supplementary_files_format_and_content: tabular files were generated with featureCounts and contain raw gene counts

source_name: HUVEC cells cultivated on PCL-Gl-glu

growth_protocol: Human umbilical vein endothelial cells (HUVEC) were isolated and cultivated as follows. Umbilical vein was washed with 50 ml of phosphate buffer (PBS), then with 20 ml of collagenase IV buffer (1.5 mM HEPES, 14 mM NaCl, 0.4 mM KCl, 0.12 mM CaCl2, 0.04 mM MgSO4, 0.76 mM D-glucose, pH 7.4), and incubated for 15 min at 37°C with 0.1 % collagenase IV. After incubation the solution of 0.1 % collagenase IV with detached cells was collected, vein was additionally washed with 20 ml PBS,  both solutions were combined and centrifuged at 800g for 10 minutes to pellet cells. Supernatant was discarded, cell pellet was resuspended, and cells were cultivated in petri dishes covered with 0.5% gelatin solution in IMDM (Gibco, USA) with 10% FBS (Gibco, USA) and antibiotics. On the next day, adherent cells were carefully washed from blood cells with IMDM and further cultivated in fresh IMDM with 10% FBS (passage 0). The cells were passaged once per 3-4 days after 70-80% confluence was reached. Following 12 hours after seeding, adherent cells were carefully washed with culture medium. To dissociate cells, a 0.1% solution of collagenase IV was used. To cultivate cells on the surface of matrices, second passage HUVEC were seeded in 8-well Nunc™ Lab-Tek™ Chamber Slide System (Invitrogen, Carlsbad, CA, USA) (104 cells per well).

extract_protocol:
RNA was isolated using TriZol according to the protocol provided by the manufacturer. Samples contained from 1.5 to 3.5 μg RNA. RNA was precipitated by 70% alcohol with 40 µg of glycogen (Thermo Scientific), the pellet was dried, dissolved in RNA storage medium (53201-013-Sigma) and then dried on a vacuum rotary evaporator. RNA quality in all samples was confirmed by Bioanalyzer 2100 immediately after isolation and prior to sequencing.
The libraries were prepared for the sequencing using Illumina TruSeq Stranded mRNA Sample Preparation Kit and were sequenced with the HiSeq 2500.

treatment_protocol: To evaluate the gene expression profile of HUVEC obtained from 2 biological donors were used. Cells (7×104) were seeded in the wells of a 24-well plate with or without  3D matrices fixed/secured at the bottom by polytetrafluoroethylene O-rings (O-ring footprint ~1,2 cm2). After 48 h of cultivation, culture medium was removed, matrices were washed with one change of phosphate buffer and transferred to tubes with 750 μl of TriZol reagent (Life Technology).

tag: cultivated on

value: PCL-Gl-glu


title: PCL-Gl-glu_Rep2

status: Public on Nov 29 2018

type: SRA

library_source: transcriptomic

molecule: polyA RNA

organism: Homo sapiens

tag: cell line

value: Human umbilical vein endothelial cells (HUVEC)


title: TCPS_control_Rep1

source_name: HUVEC cells cultivated on TCPS

value: TCPS


title: PCL-Gl_Rep1

source_name: HUVEC cells cultivated on PCL-Gl

value: PCL-Gl


title: PLGA_Rep1

source_name: HUVEC cells cultivated on PLGA

value: PLGA


title: TCPS_control_Rep2


title: PCL_Rep1

source_name: HUVEC cells cultivated on PCL

value: PCL


title: NveB.5

city: Parkville

first: Carolyn

middle: A

last: de Graaf

address: 1G Royal Parade

country: Australia

institute: Walter and Eliza Hall Institute

description:
Haemopedia-Human-RNASeq_raw.txt
Haemopedia-Human-RNASeq_rpkm.txt

data_processing:
Sequence reads were alligned using the R Subread aligner
Genewise counts were obtained using FeatureCounts
Counts were converted to counts per million mapped reads per kilobase of transcript
Genome_build: GRCh38/hg38
Supplementary_files_format_and_content: raw_counts file is the counts as given by FeatureCounts
Supplementary_files_format_and_content: norm_Log2RPKM files give the normalized Log2 reads per kilobase of transcript, per million mapped reads

molecule: total RNA

source_name: Naive B Cell

extract_protocol:
Buffy pack from adult donors
PBMCs were isolated with Ficoll Density Gradient
RNA was isolated from two biological repliates (RNAeasy plus micro kit, QIagen)
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: cell type

value: Naive B Cell

tag: cell lineage

value: B Cell Lineage

tag: antibodies

tag: tissue

value: Peripheral Blood


title: PCL-Gl_Rep2


title: PLGA_Rep2


title: PCL_Rep2


title: NK.4

source_name: NK Cell

value: NK Cell

value: NK Cell Lineage


title: Neut.3

source_name: Neutrophil

value: Neutrophil

value: Neutrophil Lineage

value: Miltenyi Biotec Eosinophil Isolation Kit Negative


title: Mono.5

source_name: Monocyte

value: Monocyte

value: Macrophage Lineage

value: CD14:Hi BDCA1:- BDCA2:- CD123:Lo


title: HeLa_putrescine_3mM_day1

type: RNA

city: Kamakura

first: Satoshi

last: Kondo

state: Kanagawa

address: 10-1 tebiro 6-chome

country: Japan

institute: Toray Industries,Inc.

description: HeLa P3d1

hyb_protocol: Hybridized for 16 h at 37 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..

scan_protocol: 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).

data_processing: The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all blank spots’ signal intensities of 95% confidence intervals.

source_name: HeLa, putrescine 3mM, day1

label_protocol: cDNA and Amino Allyl aRNA was synthesis by Amino Allyl MessageAmp II aRNA Amplification Kit (Ambion#1753). CyeDye Coupling and fragmentation were performed as the protocol supplied by TORAY Industries, Inc..

growth_protocol: HeLa cells were incubated in DMEM which contains 10% dialized FBS and penicillin/ streptomycin.

extract_protocol: ISOGEN was used for extracting total RNA

treatment_protocol: HeLa cells were exposed to 0mM, 3mM and 5mM putrescine. Cell collection was performed at 24 hours and 72 hours.

value: HeLa

tag: treated with

value: Purtersine 3mM

tag: time point

value: 24 hrs


title: HeLa_putrescine_0mM_day1

description: HeLa P0d1

source_name: HeLa, control, day1

value: Purtersine 0mM


title: Mono.4


title: NveB.4


title: CD8T.4

source_name: CD8:+ T Cell

value: CD8:+ T Cell

value: T Cell Lineage


title: CD4T.4

source_name: CD4:+ T Cell

value: CD4:+ T Cell


title: CD8T.3


title: NveB.3

value: Naive B Cell

value: B Cell Lineage


title: NK.3

value: NK Cell

value: Peripheral Blood


title: myDC.1

source_name: Myeloid DC

value: Myeloid DC

value: Dendritic Cell Lineage


title: NveB.1


title: CD8T.2


title: Mono.3


title: MemB.1

source_name: Memory B Cell

value: Memory B Cell


title: MemB.3


title: CD4T.3


title: myDC.2


title: NK.2

value: NK Cell Lineage


title: NveB.2


title: MonoNonClassical.1

source_name: Non-classical monocyte

value: Non-classical monocyte

value: Macrophage Lineage

value: CD14:Int BDCA1:- BDCA2:- CD123:Int


title: Mono.2

value: Monocyte

value: CD14:Hi BDCA1:- BDCA2:- CD123:Lo


title: myDC123.2

source_name: Myeloid DC CD123+

value: Myeloid DC CD123+


title: MemB.2


title: Eo.2

source_name: Eosinophil

value: Eosinophil

value: Eosinophil Lineage

value: Miltenyi Biotec Eosinophil Isolation Kit Negative


title: CD4T.2

value: CD4:+ T Cell

value: T Cell Lineage


title: MonoNonClassical.2


title: pDC.1

source_name: Plasmacytoid DC

value: Plasmacytoid DC

value: CD14:- BDCA1:- BDCA2:+ CD123:Hi


title: NK.1

value: NK Cell

value: Peripheral Blood


title: Neut.1

value: Neutrophil

value: Neutrophil Lineage

value: Miltenyi Biotec Eosinophil Isolation Kit Positive


title: Mono.1

value: Macrophage Lineage


title: Eo.1


title: CD4T.1


title: WT_3

city: Cold Spring Harbor

first: Hannes

last: Claeys

state: New York

address: 1 Bungtown Road

country: USA

institute: Cold Spring Harbor Laboratory

description: WT rep 3

data_processing:
Data filtering: Adapter trimming and quality filtering using Trimmomatic 0.36 (parameters ILLUMINACLIP:TruSeq3-PE.fa:2:30:10:8:TRUE LEADING:10 TRAILING:10 SLIDINGWINDOW:4:20 MINLEN:40)
Alignment: HiSat2 2.1.0 to maize AGPv4 (Ensembl release 39), using standard parameters
Count generation: HTSeq-count to the maize AGPv4.39 GTF, using standard parameters
Genome_build: Maize AGPv4.39
Supplementary_files_format_and_content: Raw counts (HTseq-count output)

organism: Zea mays

source_name: Developing ears of wild-type (B73) plants

growth_protocol: Plants were grown between June and August in standard field conditions at Uplands Farm in Cold Spring Harbor, NY. Young ears were dissected and immediately frozen in liquid nitrogen.

extract_protocol:
Total RNA was extracted using the Zymo Research DirectZol RNA Miniprep kit, according to the manufacturer's instructions.
mRNA sequencing libraries were constructed using the Roche Kapa mRNA HyperPrep Kit, according to the manufacturer's instructions.

value: developing ears (2-3 mm length)

tag: genotype

value: wildtype


title: ra3tpp4_1

description: ra3;tpp4 rep 1

source_name: Developing ears of ra3;tpp4 plants


title: WT_1

description: WT rep 1


title: CD8T.1

value: CD8:+ T Cell


title: Neut.2


title: myDC123.1

value: Myeloid DC CD123+

value: Dendritic Cell Lineage


title: WT_2

description: WT rep 2


title: ra3tpp4_3

description: ra3;tpp4 rep 3


title: scTrioSeq2Met_CRC01_MP2_040

city: Beijing

first: Yu

last: Hou

state: Beijing

address: No.5 Yiheyuan Street

department: School of life sciences

country: China

institute: Peking University

description: single cell DNA methylome seq

library_source: genomic

data_processing:
Illumina CASAVA version 1.8 were used to the basecalling.
The raw sequencing reads were trimmed to remove sequencing adapters, amplification primers, and low-quality bases in read ends.
For the data from scRNA-seq performed according to Tang protocol (Tang et al., 2009), trimmed clean reads were aligned to human reference genome (hg19) using STAR (v2.5.0) 2-pass mapping steps. For the data from scRNA-seq performed according to the multiplexed scRNA-seq method, the analyses were done as the previous paper (Dong et al., 2018).
For bisulfite sequencing data, trimmed clean reads were mapped to human reference genome (hg19) using Bismark (v0.7.6)
Genome_build: hg19
Supplementary_files_format_and_content: The FPKM.txt files include the FPKM values of RefSeq genes. The TPM.txt files include the TPM values of RefSeq genes. The SingleC files include the DNA methylation level of each singleC sites.

molecule: genomic DNA

source_name: CRC

growth_protocol: The HEp-2 (ATCC CCL-23) cell line were cultured in RPMI 1640 with 10% FBS, and digested with trypsin before single cell picking.

extract_protocol:
The single viable cells were individually picked into 200-uL tubes containing lysis buffer. For scTrio-seq2, we used magnetic beads (Invitrogen, cat. #65011) to separate the nucleus and RNA of one single cell. We added 0.2 ?L magnetic beads to each single-cell lysis buffer. Then the single cells were lysed and vortexed for 1 min to release RNA. The lysis products were then centrifuged at 1,000 × g for 5 min at 4°C, and placed on the magnetic rack for 5 min. The magnetic beads can aggregate on the surface of the nucleus to maintain the nucleus in the pellet, while the RNA was released in the supernatants. The supernatants containing RNA were transferred to a new tube for transcriptome sequencing. The remaining beads containing a single nucleus were re-suspended with lysis buffer of scBS-seq for DNA methylation sequencing
For single-cell whole-genome bisulfite sequencing, the scBS-seq libraries were constructed according to the published protocol as described in 2017 (Clark et al., 2017). For CRC01 and CRC02, the transcriptome sequencing libraries were constructed according to Tang protocol (Tang et al., 2009); for the remaining patients, the transcriptome sequencing libraries were constructed according to a multiplexed scRNA-seq method, in which the poly T primers were combined with barcodes and unique molecule identifiers (UMIs) (Dong et al., 2018).

treatment_protocol: Informed consent was obtained from all patients preoperatively. Multi-regional sampling tissues were collected. For each tumor, 3-6 regions, including both surface and center areas, were sampled. Except for the MP of CRC01 which was sampled after six cycles of chemotherapy, other tumors were all sampled before treatment. Patient-derived tumors and adjacent normal tissue were collected and processed immediately after surgical resection. The dissected tissues were then mechanically dissociated and enzymatically digested to single-cell suspension using collagenase type II (Invitrogen, cat. #17101015) and collagenase type IV (Invitrogen, cat. #17104019). For 5 patients (CRC11, CRC12, CRC13, CRC14, and CRC15), leukocytes were depleted by magnetic-activated cell sorting (MACS) (CD45 Microbeads, Miltenyi Biotec, cat. #130-045-801) or fluorescence-activated cell sorting (FACS) (BV421 Mouse Anti-Human CD45, BD Horizon, cat. #563879).

tag: disease state

value: Carcinoma


title: scTrioSeq2Met_CRC01_MP2_051

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_128

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_044

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_052

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_043

description: single cell DNA methylome seq


title: ra3tpp4_2

description: ra3;tpp4 rep 2


title: scTrioSeq2Met_CRC01_MP2_039

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_041

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_037

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_036

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_031

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_270

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_272

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_266

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_271

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_269

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_252

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_251

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_262

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_247

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_258

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_241

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_029

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_238

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_249

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_257

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_237

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_236

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_246

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_239

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP2_028

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_242

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_230

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_234

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_228

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_226

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_225

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_232

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_231

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_221

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_215

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_250

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_233

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_223

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_220

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_213

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_222

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_216

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_217

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_227

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_214

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_211

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_209

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_206

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_208

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_205

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_163

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_147

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_152

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_160

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_148

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_137

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_144

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_210

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_016

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_022

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_212

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_020

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_006

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_012

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_004

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_169

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_167

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_011

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_158

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_156

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_150

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_149

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_148

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_145

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_134

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_144

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_141

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_159

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_158

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_157

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_126

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_135

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_128

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_123

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_121

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_137

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_119

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_117

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_120

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_146

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_105

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_085

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_116

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_104

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_147

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_140

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_138

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_136

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_078

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_082

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_127

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_073

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_072

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_125

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_079

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_076

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_069

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_124

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_070

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_066

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_064

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_059

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_142

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_042

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_040

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_038

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_034

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_033

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_036

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_031

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_024

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_029

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_030

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_025

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_021

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_020

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_015

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_442

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_010

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_270

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_457

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_251

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_268

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_014

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_198

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_456

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_197

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_193

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_188

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_191

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_452

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_185

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_190

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_184

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_183

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_175

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_180

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_035

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_176

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_170

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_168

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_169

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_167

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_166

description: single cell DNA methylome seq


title: scTrioSeq2Rna_CRC02_PT6_303

description: single cell RNA seq


title: scTrioSeq2Met_CRC01_LN3_441

description: single cell DNA methylome seq


title: scTrioSeq2Rna_CRC02_PT6_302

description: single cell RNA seq


title: scTrioSeq2Met_CRC01_LN2_186

description: single cell DNA methylome seq


title: scTrioSeq2Rna_CRC02_PT5_309

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT6_299

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT6_297

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT4_331

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT6_300

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT4_330

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT4_326

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT2_272

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT2_275

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT4_324

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT4_328

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT4_325

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT1_247

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT1_263

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_222

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_221

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_216

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_218

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT1_244

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_214

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_212

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT6_301

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_215

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_211

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_209

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_171

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_174

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_176

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_170

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT5_307

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_169

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_162

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_165

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_161

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_155

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_158

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_157

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_160

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_134

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT2_276

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_129

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_130

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_126

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_132

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_131

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_125

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_133

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_124

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_122

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_119

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_120

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_123

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_118

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_117

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_116

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_114

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_113

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_110

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_111

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_112

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_109

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_106

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_107

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_108

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_105

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML2_177

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML2_179

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML3_316

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML3_315

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_093

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_096

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_092

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML3_317

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML3_318

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_085

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_115

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_088

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_090

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_091

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_084

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_083

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_082

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_081

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_080

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_079

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_078

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_077

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_075

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_048

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_047

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_045

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_046

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_043

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_044

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_039

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_040

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_042

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_038

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_037

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_PT1_243

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_036

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_041

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_035

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_032

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_031

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_028

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_029

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_027

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_033

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_026

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_023

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_022

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_024

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_025

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_020

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_018

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_017

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_015

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_016

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_012

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_013

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_009

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_010

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_014

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_007

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_006

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_424

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_001

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_002

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_004

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_419

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_421

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_414

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_411

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_409

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_405

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_416

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_404

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_373

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_413

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_377

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_370

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_403

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_372

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT4_369

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML1_008

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_433

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_392

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_386

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_390

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_437

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_368

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_384

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_362

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_359

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_364

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_361

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_367

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_363

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_352

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_346

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_351

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_349

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_345

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_344

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_343

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_342

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_340

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_337

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_338

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_385

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_335

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_331

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_560

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_330

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_550

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_549

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_547

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_538

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_539

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_347

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_356

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_537

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_484

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_542

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_467

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_483

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_463

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_464

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_482

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_461

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT3_332

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_326

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_460

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_556

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_320

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_459

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_318

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_319

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_315

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_154

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_307

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_304

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_306

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_302

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_303

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_300

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_465

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_298

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_299

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_301

description: single cell RNA seq


title: scTrioSeq2Rna_CRC02_ML4_210

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_296

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_297

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_291

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_289

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_285

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_295

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_317

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_325

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_283

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT2_308

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_284

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_231

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_237

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_281

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_216

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_218

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_212

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_227

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_206

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_225

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_203

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_NC_502

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_123

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_293

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_286

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_292

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_282

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_116

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_111

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_112

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_230

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_110

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_109

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_107

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_106

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_229

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_204

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_232

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_213

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_PT1_224

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_192

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_188

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_185

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_083

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_196

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_173

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_183

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_119

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_191

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_081

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_080

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_078

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_115

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_077

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_073

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP5_114

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP3_105

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP3_100

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP3_098

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP4_066

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_129

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_128

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_050

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_042

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_035

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_040

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_039

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_032

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_031

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_030

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP2_026

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_269

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_266

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_262

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_257

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_251

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_252

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_249

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_242

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_239

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_241

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_238

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_246

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_247

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_233

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_236

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_232

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_231

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_228

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_226

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_225

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_223

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_220

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_230

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_221

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_250

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_279

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_219

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_217

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_215

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_271

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_212

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_205

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_208

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_169

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_206

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_164

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_163

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_268

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_160

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_158

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_167

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_149

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_166

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_148

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_145

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_146

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_143

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_137

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_134

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_131

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_020

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_012

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_016

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_214

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_207

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_159

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_001

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_158

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_007

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_005

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_003

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_011

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_150

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_149

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_154

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_157

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_148

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_139

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_138

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_144

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_137

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_136

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_147

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_142

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_131

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_144

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_146

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_135

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_128

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_140

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_132

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_127

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_130

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_124

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_119

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_126

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_118

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_116

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_123

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_121

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_113

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_117

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_120

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_111

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_105

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_112

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_101

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_098

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_114

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_104

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_097

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_095

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_096

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_088

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_092

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_091

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_086

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML4_125

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_085

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_079

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_082

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_080

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_076

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_084

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_078

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_MP1_209

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML3_081

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_072

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_075

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_073

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_070

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_068

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_067

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_066

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_065

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_069

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_059

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_064

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_061

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_063

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_062

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_058

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_056

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_057

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_052

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_055

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_054

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_051

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_042

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_041

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_049

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_048

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_047

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_046

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_044

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML2_043

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_037

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_040

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_038

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_033

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_032

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_036

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_030

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_031

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_026

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_029

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_024

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_023

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_025

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_022

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_019

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_018

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_020

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_021

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_015

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_014

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_017

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_010

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_007

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_004

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_005

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_440

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_002

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_009

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_ML1_035

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_263

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_254

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_274

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_250

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_273

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_249

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_247

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_252

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_248

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_245

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_246

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_242

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_241

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_458

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_454

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_243

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_200

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN3_244

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_196

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_194

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_453

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_191

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_190

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_185

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN2_179

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_172

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_174

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_169

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_166

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_167

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_165

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_163

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_162

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_164

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_161

description: single cell RNA seq


title: scTrioSeq2Met_HEp-2_6

description: single cell bisulfite seq

source_name: CCL23 cell line

tag: disease

value: HeLa contaminant

tag: cell morphology

value: epithelial


title: scTrioSeq2Met_HEp-2_7

description: single cell bisulfite seq


title: scTrioSeq2Rna_CRC01_LN2_195

description: single cell RNA seq


title: scTrioSeq2Met_HEp-2_4

description: single cell bisulfite seq


title: scTrioSeq2Met_HEp-2_2

description: single cell bisulfite seq


title: scTrioSeq2Met_HEp-2_3

description: single cell bisulfite seq


title: scTrioSeq2Met_HEp-2_1

description: single cell bisulfite seq


title: scBS_HEp-2_3

description: single cell bisulfite seq


title: scTrioSeq2Met_HEp-2_5

description: single cell bisulfite seq


title: scTrioSeq2Rna_CRC01_LN2_189

description: single cell RNA seq


title: scTrioSeq2Rna_HEp-2_7

description: single cell RNA seq


title: scBS_HEp-2_2

description: single cell bisulfite seq


title: scTrioSeq2Rna_HEp-2_5

description: single cell RNA seq


title: scBS_HEp-2_1

description: single cell bisulfite seq


title: scTrioSeq2Rna_HEp-2_6

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_171

description: single cell RNA seq


title: scTrioSeq2Rna_CRC01_LN1_168

description: single cell RNA seq


title: scTrioSeq2Rna_HEp-2_2

description: single cell RNA seq


title: scTrioSeq2Rna_HEp-2_1

description: single cell RNA seq


title: scRNA_HEp-2_3

description: single cell RNA seq


title: scRNA_HEp-2_2

description: single cell RNA seq


title: scRNA_HEp-2_1

description: single cell RNA seq


title: scTrioSeq2Rna_HEp-2_3

description: single cell RNA seq


title: scTrioSeq2Rna_HEp-2_4

description: single cell RNA seq


title: scTrioSeq2Met_CRC01_PT2_301

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_542

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT1_240

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_429

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_425

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_NC_499

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_332

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_NC_498

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_NC_497

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_543

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_405

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_NC_500

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_334

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_541

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_341

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_545

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT1_217

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_403

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_474

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_335

description: single cell DNA methylome seq


title: scTrioSeq2Rna_CRC01_ML3_109

description: single cell RNA seq


title: scTrioSeq2Met_CRC01_NC_496

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_NC_495

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_NC_493

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_565

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_331

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT1_214

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_NC_492

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP3_100

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_NC_494

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_101

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_098

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_052

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_218

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_154

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP3_099

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_041

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_132

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_054

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_053

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_055

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_047

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_102

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_043

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_012

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_007

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_063

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_005

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_448

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_017

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_447

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_MP1_219

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_096

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML4_152

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_088

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML2_062

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_097

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML3_087

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_260

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_259

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_ML1_013

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_252

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_250

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_245

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_196

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_182

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_249

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_179

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN3_241

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_453

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_451

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_200

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_195

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_450

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_178

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_171

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_199

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_181

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN2_192

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_164

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_PT6_302

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_174

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_LN1_172

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_PT6_301

description: single cell DNA methylome seq


title: Scrambled_2days rep3

city: Oxford

first: Reshma

last: Nibhani

address: Windmill Road

department: NDORMS

country: United Kingdom

institute: University of Oxford

data_processing:
Sequencing reads from the RNA-seq experiment were aligned to the human genome using hisat2 version 2.1.0 with the default parameters.
FeatureCounts (Subread package version 1.6.0)  was used to assign mapped reads to genes with annotation gtf file Ensembl87.
Differential gene expression analysis was performed using DESeq2 (Bioconductor version 3.7) with FDR-adjusted p value  < 0.05 and log2 fold change > 1
Genome_build: hg38
Supplementary_files_format_and_content: Tab-delimited text file, Expression profile,raw counts of sequencing reads for genes

source_name: Scrambled 2days rep3

growth_protocol: SSC-40 cells were seeded into wells of a 48-well plate at a density of 10,000 cells/well in DMEM medium (supplemented with 10% FCS,  2 mM L-Glutamine, 100 units/ml penicillin, 100 ug/ml streptomycin, 1x NEAA).

extract_protocol:
RNA was harvested using Trizol (Invitrogen) and purified by Direct-zol RNA MiniPrep (Zymo Research)
100 ng of RNA was used as input for the NEBNext Poly(A) mRNA Magnetic Isolation Module (New England Biolabs) followed by library prep using a NEBNext Ultra II Directional RNA Library Prep Kit for Illumina (New England Biolabs)

treatment_protocol: Compounds (12 (VinSpinIn, inhibitor of SPIN1) and 15 (VinSpinIC, inactive control for compound 12) or DMSO control) or siRNA (#s21490 Silencer Select Pre-Designed (Life Technologies), targeting SPIN1 mRNA) were added 24 hours after seeding. RNA was harvested 2 and 4 days after addition of siRNA or 5 and 7 days after addition of compounds.

tag: treatment

value: Scrambled 2days


title: scTrioSeq2Met_CRC02_PT6_303

description: single cell DNA methylome seq


title: Scrambled_4days rep3

source_name: Scrambled 4days rep3

value: Scrambled 4days


title: Scrambled_4days rep2

source_name: Scrambled 4days rep2


title: scTrioSeq2Met_CRC01_LN1_162

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_PT6_297

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_PT6_300

description: single cell DNA methylome seq


title: Scrambled_2days rep1

source_name: Scrambled 2days rep1


title: Scrambled_2days rep2

source_name: Scrambled 2days rep2


title: scTrioSeq2Met_CRC01_LN3_244

description: single cell DNA methylome seq


title: Scrambled_4days rep1

source_name: Scrambled 4days rep1


title: DMSO_7days rep3

source_name: DMSO 7days rep3

value: DMSO 7days


title: DMSO_7days rep2

source_name: DMSO 7days rep2


title: DMSO_7days rep1

source_name: DMSO 7days rep1


title: scTrioSeq2Met_CRC02_PT2_276

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_PT5_309

description: single cell DNA methylome seq


title: DMSO_5days rep1

source_name: DMSO 5days rep1

value: DMSO 5days


title: scTrioSeq2Met_CRC02_PT1_263

description: single cell DNA methylome seq


title: DMSO_5days rep2

source_name: DMSO 5days rep2


title: scTrioSeq2Met_CRC02_PT1_247

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_NC_346

description: single cell DNA methylome seq


title: siRNA_100nM_4days rep2

source_name: siRNA 100nM 4days rep2

value: siRNA 100nM 4days


title: scTrioSeq2Met_CRC02_NC_344

description: single cell DNA methylome seq


title: siRNA_100nM_4days rep1

source_name: siRNA 100nM 4days rep1


title: scTrioSeq2Met_CRC02_NC_341

description: single cell DNA methylome seq


title: siRNA_100nM_2days rep3

source_name: siRNA 100nM 2days rep3

value: siRNA 100nM 2days


title: scTrioSeq2Met_CRC02_ML4_115

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_NC_340

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML4_107

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_PT2_275

description: single cell DNA methylome seq


title: siRNA_100nM_4days rep3

source_name: siRNA 100nM 4days rep3


title: siRNA_100nM_2days rep2

source_name: siRNA 100nM 2days rep2


title: scTrioSeq2Met_CRC02_ML3_318

description: single cell DNA methylome seq

source_name: CRC


title: Compound15_7days rep1

source_name: Compound15 7days rep1

value: Compound15 7days


title: siRNA_100nM_2days rep1

source_name: siRNA 100nM 2days rep1


title: Compound15_7days rep3

source_name: Compound15 7days rep3


title: Compound15_5days rep3

source_name: Compound15 5days rep3

value: Compound15 5days


title: scTrioSeq2Met_CRC02_ML3_317

description: single cell DNA methylome seq


title: DMSO_5days rep3

source_name: DMSO 5days rep3


title: scTrioSeq2Met_CRC02_ML4_105

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_077

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML4_103

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML3_315

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_075

description: single cell DNA methylome seq


title: Compound12_7days rep3

source_name: Compound12 7days rep3

value: Compound12 7days


title: Compound12_7days rep1

source_name: Compound12 7days rep1


title: Compound15_5days rep1

source_name: Compound15 5days rep1


title: scTrioSeq2Met_CRC02_ML1_074

description: single cell DNA methylome seq


title: Compound12_5days rep3

source_name: Compound12 5days rep3

value: Compound12 5days


title: Compound15_7days rep2

source_name: Compound15 7days rep2


title: scTrioSeq2Met_CRC02_ML1_046

description: single cell DNA methylome seq


title: Compound15_5days rep2

source_name: Compound15 5days rep2


title: scTrioSeq2Met_CRC02_ML1_043

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML3_316

description: single cell DNA methylome seq


title: Compound12_5days rep1

source_name: Compound12 5days rep1


title: Compound12_7days rep2

source_name: Compound12 7days rep2


title: scTrioSeq2Met_CRC02_ML1_040

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_039

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_041

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_035

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_037

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_033

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_032

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_036

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_038

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_031

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_029

description: single cell DNA methylome seq


title: Compound12_5days rep2

source_name: Compound12 5days rep2


title: scTrioSeq2Met_CRC02_ML1_028

description: single cell DNA methylome seq


title: Epi-rep3 [8_EPI3]

city: Jerusalem

first: Avner

last: Ehrlich

address: Silberman 3-512, Edmond J. Safra Campus (Givat Ram)

department: Bioengineering

country: Israel

institute: The Hebrew University of Jerusalem

data_processing:
Sequencing reads were mapped to the UCSC human transcriptome (genome build hg19) using Bowtie 2 and expression levels of all genes were quantified using RSEM
RSEM yielded an expression matrix of inferred gene counts. Differential expression analysis was performed using R package DESeq2 using default parameters.
Reported are p-values from a negative binomial Wald-test.
Overall, we found 2012 genes that showed differential mRNA expression between the GATA6+/SOX17+ and NANOG+/OCT4+ cell populations with a BH-FDR<0.1 and a 2-fold change between the conditions.
Genome_build: hg19
Supplementary_files_format_and_content: counts and TPM for the 6 samples (3 PE, 3 Epi)

source_name: Epiblast

growth_protocol: Human embryonic stem cells lines I3, HuES-8  and H1:OCT4-GFP  were cultured on growth factor reduced Matrigel™ (BD Biosceinces, San Jose, CA) in mTeSR-1 media (StemCell Technologies, Vancouver, Canada). Cells were obtained from the Technion (Prof. J. Itskovitz-Eldor), the Harvard Stem Cell Institute (Boston, MA), and WiCell (Madison, WI), respectively, authenticated at source and tested for mycoplasma contamination using PCR. Cells were serially passaged using Accutase™ (Merck, USA) and grown in a humidified incubator at 37°C and 5% CO2.

extract_protocol:
The NANOG+/OCT4+ aggregate was carefully removed using forceps and the remaining GATA6+/SOX17+ fraction was removed using a cell scraper. The process produced >95% homogenous fractions for the aggregate and the scraped layer, determined by immunofluorescence analysis of NANOG+ or SOX17+ immediately after separation. RNA extraction was performed using RNeasy Micro kit (Qiagen, Valencia, CA) according to manufacturer’s direction.
Library preparation and RNA sequencing was performed by the Hebrew University Center for Genomic Technologies. Library construction was conducted using Illumina TruSeq RNA Library Prep V2 Kit (Illumina, San Diego, CA) according to manufacturer's protocol and sequenced on Illumina NextSeq500 with single-end, 86 bp reads using the High Output V2 Kit.

treatment_protocol: Spontaneous differentiation was carried out in knockout DMEM/F12 (Life Technologies, USA), supplemented with 20% knockout serum replacement (Life Technologies, USA), 2 mM L-Alanine-L-Glutamine (Biological Industries, Israel), 100 µM non-essential amino acids (Biological Industries, Israel), 0.1 µM 2-mercaptoethanol (Merck, USA) and 500 U/mL penicillin and 1 mg/mL streptomycin (BI, Israel) as previously described.

value: hESC spontaneously differentiated 4 days in micropatterned tissue

tag: region

value: stress-low region

tag: if region stains


title: PE-rep2 [4_PE2]

source_name: Primitive Endoderm

value: stress-high region


title: PE-rep3 [5_PE3]


title: Epi-rep2 [7_EPI2]


title: Epi-rep1 [6_EPI1]


title: PE-rep1 [3_PE1]


title: scTrioSeq2Met_CRC02_ML1_026

description: single cell DNA methylome seq

source_name: CRC


title: Fetal_hepatocyte_organoids_1_and_2_P22

city: Utrecht

first: Huili

last: Hu

address: Upsalalaan 8

country: Netherlands

institute: Hubrecht Institute

description: Fetal hepatocyte organoids 1and 2 at passage 22

data_processing:
Paired end reads were aligned to the transcriptome using bwa. Paired end reads obtained by CEL-seq were aligned to the transcriptome using bwa (version 0.6.2-r126) with default parameters. The transcriptome contained all RefSeq gene models based on the mouse genome release mm10 downloaded from the UCSC genome browser and contained 31,109 isoforms derived from 23,480 gene loci. All isoforms of the same gene were merged to a single gene locus. The right mate of each read pair was mapped to the ensemble of all gene loci and to the set of 92 ERCC spike-ins in sense direction. Reads mapping to multiple loci were discarded. The left read contains the barcode information: the first eight bases correspond to the cell specific barcode followed by 4or 8 bases representing the unique molecular identifier. The remainder of the left read contains a polyT stretch followed by few (<15 transcript derived bases). The left read was not used for quantification. For each cell barcode we counted the number of unique molecular identifiers for every transcript and aggregated this number across all transcripts derived from the same gene locus. Based on binomial statistics we converted the number of observed unique molecular identifiers into transcript counts.
Genome_build: mm10
Supplementary_files_format_and_content: coutb or coutt files contain UMI barcode normalised abundance counts; ‘bc_celseq2.csv’ file includes all the barcode for each cell ID; readme.txt contains the information about in which column number you could find the proper 1 or 2 samples.

source_name: Liver organoids

growth_protocol: Isolated hepatocytes were filtered by 70um filter, washed twice with cold AdDMEM/F12, counted and mixed with MatrigelR in suspension plates (Greiner). 20,000-50,000 cells were used per well of a 24 well plate. After MatrigelR was solidified, Hep-Medium was added. Hep-Medium consists of AdDMEM/F12 (Thermo Scientific, with Hepes, GlutaMax and Penicillin-Streptomycin ) plus 15% RSPO1 conditioned medium (home-made), B27 (minus vitamin A), 50ng/ml EGF (Peprotech), 1.25mM N-acetylcysteine (Sigma), 10 nM gastrin (Sigma), 3um CHIR99021 (Sigma), 25ng/ml HGF (Peprotech), 50ng/ml FGF7 (Peprotech), 50ng/ml FGF10 (Peprotech), 1uM A83-01 (Tocris), 10 mM Nicotinamide (Sigma), and 10uM Rho Inhibitor -27632 (Calbiochem). 14 days after seeding, organoids were mechanically fragmented and re-seeded into new MatrigelR. During culturing, medium was refreshed at most every three days. Organoids are usually passaged with a split ratio of 1:3 every 7-10 days.

extract_protocol:
Hepatocytes were isolated by two steps of collagenase perfusion. Organoids were withdrawn from Matrigel. For bulk sequencing, mRNA were isolated by trizol method according to manufacter's protocol. RNA-sequencing libraries were prepared based on the DESeq2 method (Hashimshony et al., 2016; Love et al., 2014). For single cell sequencing, Organoids were digested by triple into single cells. Live positive single cells were sorted in 384-well hard shell plates (Biorad) with 5 μl of vapor-lock (QIAGEN) containing 100 nl of RT primers (consisting of a 24 bp polyT stretch, a 8bp random molecular barcode (UMI), a cell-specific barcode, the 5'Illumina TruSeq small RNA kit adaptor and a T7 promoter), dNTPs and mRNA ERCC Spike-Ins (Agilent) and immediately frozen to −80°C. Before starting with SORT-seq, cells were first lysed 5 min at 65°C.
RNA was processed using the previously described SORT-seq tecnique, which is an implemented version of the CEL-seq2 technique. Libraries were sequenced on an Illumina NextSeq 500 using 75bp paired end sequencing.

treatment_protocol: No treatment

value: Human Fetal Hep-Orgs

tag: tissue/cell type

value: hepatocyte organoids (Hep-Orgs)


title: Fetal_hepatocyte_organoids_1_and_2_P11

description: Fetal hepatocyte organoids 1 and 2 at passage 11


title: Fetal_hepatocyte_organoids_1_and_2_P5

description: Fetal hepatocyte organoids 1 and 2 at passage 5


title: Fetal_hepatocyte_organoids_1_and_2_P3

description: Fetal hepatocyte organoids 1and 2 at passage 3


title: Fetal_hepatocyte_organoids_4_and_5_P2

description: human fetal hepatocyte organoids 4 and 5 at passage 2


title: scTrioSeq2Met_CRC02_ML1_025

description: single cell DNA methylome seq

value: Carcinoma


title: Human_Cholangiocyte_organoids_DM_1_and_2

description: Cholangiocyte organoids 1 and 2 in Differentiation Medium

value: Human Chol-Orgs

value: cholangiocytes organoids (Chol-Orgs)


title: Fetal_hepatocyte_organoids_1_and_2_P9

description: Fetal hepatocyte organoids 1 and 2 at passage 9


title: scTrioSeq2Met_CRC02_ML1_022

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_024

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_018

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_017

description: single cell DNA methylome seq


title: Human_Fetal_Chol_Org_sc

description: single cell sequencing from human fetal cholangiocyte organoids


title: scTrioSeq2Met_CRC02_ML1_020

description: single cell DNA methylome seq


title: primary_human_hepatocytes_1_and_2

description: primary human hepatocytes 1 and 2

source_name: Human liver

value: Human

value: Liver; human hepatocytes


title: Primary_hepatocyte_organoids_P0_and_P1

description: Primary human hepatocyte organoids at passage 0 and passage 1

value: Human Hep-Orgs


title: scTrioSeq2Met_CRC02_ML1_015

description: single cell DNA methylome seq


title: CII_JQ1_RNAseq_rep2

city: Boston

first: James

last: Bradner

state: MA

address: 450 Brookline

department: Medical Oncology

institute: Dana-Farber Cancer Institute

data_processing:
Alignment to hg19: (H3k27ac ChIP-seq) Bowtie2 v2.3.0, default settings with parameters -p 4 -k 1; (ATAC-seq) Bowtie2 v2.3.0, default settings with parameters -p 4 -k 1; (mRNA-seq) HiSat with default parameters
Peak calling: (H3K27ac ChIP-seq) MACS v1.4 with p value cutoff 1e-6; (ATAC-seq) ZINBA v2.03.1 with read extension=200 winSize=300 offset=75
mRNA transcript abundance: Cuffquant
Genome_build: hg19
Supplementary_files_format_and_content: bedgraph files contain aligned read density generated by Bowtie2; .xlsx file contains normalized transcript abundance values (FPKM)

source_name: CII

growth_protocol: Cells were grown in RPMI media supplemented with 10% fetal bovine serum.

extract_protocol:
RNA was extracted with miRNeasy RNA extraction kit (Qiagen).
mRNA was prepared for Illumina sequencing using the TruSeq Stranded mRNA Library Prep kit (Illumina).

treatment_protocol: Cells were treated with JQ1 (1 uM)

value: CLL cell line


title: CII_JQ1_RNAseq_rep3


title: CII_JQ1_RNAseq_rep1


title: CII_DMSO_RNAseq_rep3

treatment_protocol: Cells were treated with drug vehicleDMSO (0.1%)

value: DMSO


title: CII_DMSO_RNAseq_rep2


title: scTrioSeq2Met_CRC02_ML1_009

description: single cell DNA methylome seq


title: CII_DMSO_RNAseq_rep1


title: scTrioSeq2Met_CRC02_ML1_008

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_010

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_014

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_013

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_012

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC02_ML1_005

description: single cell DNA methylome seq


title: OSUCLL_JQ1_RNAseq_rep2

source_name: OSU-CLL


title: OSUCLL_DMSO_RNAseq_rep3


title: OSUCLL_JQ1_RNAseq_rep3


title: scTrioSeq2Met_CRC02_ML1_004

description: single cell DNA methylome seq


title: Human_Fetal_Hep_Org_sc

description: single cell sequencing from human fetal hepatocyte organoids


title: scTrioSeq2Met_CRC02_ML1_003

description: single cell DNA methylome seq


title: OSUCLL_JQ1_RNAseq_rep1


title: OSUCLL_DMSO_RNAseq_rep2


title: scTrioSeq2Met_CRC02_ML1_016

description: single cell DNA methylome seq


title: Human_fetal_hepatocytes_4_and_5

description: Human fetal hepatocytes 4 and 5

value: Liver:human hepatocytes


title: OSUCLL_DMSO_RNAseq_rep1


title: scTrioSeq2Met_CRC02_ML1_001

description: single cell DNA methylome seq


title: MEC2_JQ1_RNAseq_rep3


title: scTrioSeq2Met_CRC01_PT4_423

description: single cell DNA methylome seq


title: MEC2_JQ1_RNAseq_rep2


title: scTrioSeq2Met_CRC02_ML1_002

description: single cell DNA methylome seq


title: MEC2_DMSO_RNAseq_rep3


title: scTrioSeq2Met_CRC01_PT4_422

description: single cell DNA methylome seq


title: MEC2_DMSO_RNAseq_rep2


title: scTrioSeq2Met_CRC01_PT4_419

description: single cell DNA methylome seq


title: MEC2_JQ1_RNAseq_rep1


title: scTrioSeq2Met_CRC01_PT4_417

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_420

description: single cell DNA methylome seq


title: MEC2_DMSO_RNAseq_rep1


title: scTrioSeq2Met_CRC01_PT4_418

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_416

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_414

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_415

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_413

description: single cell DNA methylome seq


title: MEC1_JQ1_RNAseq_rep3


title: MEC1_JQ1_RNAseq_rep1


title: MEC1_DMSO_RNAseq_rep2


title: MEC1_DMSO_RNAseq_rep3


title: MEC1_JQ1_RNAseq_rep2


title: MEC1_DMSO_RNAseq_rep1


title: scTrioSeq2Met_CRC01_PT4_410

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_409

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_408

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_407

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_380

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_379

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_378

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_377

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_372

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_371

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_373

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_374

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_369

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_439

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_437

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_370

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_393

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_386

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_396

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_395

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_382

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_390

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_389

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_394

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_388

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_376

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_366

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT4_381

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_368

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_363

description: single cell DNA methylome seq


title: WT differentiate in N2B27+bFGF+KSR for 12h_miRNA-seq_rep1

first: Yangming

last: Wang

address: 5 Yiheyuan Road

department: Institute of Molecular Medicine

description:
replicate1
V65_12h_miRNA_rep1

data_processing:
RNA sequencing reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm10 whole genome using STAR v2.5.0. Small RNA sequencing reads were trimmed for adaptors and matched to miRbase hairpin precursors.
Fragments Per Kilobase of exon per Megabase of library size (FPKM) were calculated using Cufflinks v2.2.1
Relative miRNA expression was calculated and normalized with in-house perl scripts.
Genome_build: mm10 from Ensemble

organism: Mus musculus

source_name: mouse embryonic stem cells

extract_protocol:
Total RNA was prepared using Trizol (Invitrogen) and quantified on a BiodropsisBD2000 (OSTC)
RNA-seq libraries are prepared using Illumina dUTP protocols; small RNA sequencing libraries are prepared using Illumina Truseq small RNA library preparation protocols.

tag: developmental stage

value: early embryo

tag: genotype/variation

value: WT

tag: strain

tag: passages


title: WT differentiate in N2B27+bFGF+KSR for 48h_miRNA-seq_rep2

description:
replicate2
V65_48h_miRNA_rep2


title: WT differentiate in N2B27+bFGF+KSR for 12h_miRNA-seq_rep2

description:
replicate2
V65_12h_miRNA_rep2


title: WT differentiate in N2B27+bFGF+KSR for 24h_miRNA-seq_rep2

description:
replicate2
V65_24h_miRNA_rep2


title: WT differentiate in N2B27+bFGF+KSR for 48h_miRNA-seq_rep1

description:
replicate1
V65_48h_miRNA_rep1


title: WT differentiate in N2B27+bFGF+KSR for 24h_miRNA-seq_rep1

description:
replicate1
V65_24h_miRNA_rep1


title: scTrioSeq2Met_CRC01_PT3_362

description: single cell DNA methylome seq


title: WT 2iL_miRNA-seq_rep2

description:
replicate2
V65_0h_miRNA_rep2


title: WT 2iL_miRNA-seq_rep1

description:
replicate1
V65_0h_miRNA_rep1


title: scTrioSeq2Met_CRC01_PT3_360

description: single cell DNA methylome seq


title: ES1 differentiate in N2B27+bFGF+KSR for 48h_rep2

description:
replicate2
es1_d2-2


title: scTrioSeq2Met_CRC01_PT3_359

description: single cell DNA methylome seq


title: ES1 differentiate in N2B27+bFGF+KSR for 48h_rep1

description:
replicate1
es1_d2-1


title: ES1 2iL_rep2

description:
replicate2
es1_d0-2


title: scTrioSeq2Met_CRC01_PT3_357

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_346

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_354

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_349

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_348

description: single cell DNA methylome seq


title: ES1 2iL_rep1

description:
replicate1
es1_d0-1


title: scTrioSeq2Met_CRC01_PT3_347

description: single cell DNA methylome seq


title: WT 2iL_rep1

description:
replicate1
v65_d0-1


title: scTrioSeq2Met_CRC01_PT3_343

description: single cell DNA methylome seq


title: WT differentiate in N2B27+bFGF+KSR for 48h_rep2

description:
replicate2
v65_d2-2


title: scTrioSeq2Met_CRC01_PT3_342

description: single cell DNA methylome seq


title: WT differentiate in N2B27+bFGF+KSR for 48h_rep1

description:
replicate1
v65_d2-1


title: scTrioSeq2Met_CRC01_PT3_344

description: single cell DNA methylome seq


title: WT 2iL_rep2

description:
replicate2
v65_d0-2


title: scTrioSeq2Met_CRC01_PT3_336

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_337

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_564

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_560

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_561

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_563

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_558

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_559

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_557

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_556

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_554

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_552

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_345

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_550

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_549

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT3_338

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_538

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_482

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_484

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_539

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_461

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_326

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_468

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_324

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_325

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_322

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_321

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_319

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_555

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_315

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_317

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT1_298

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_304

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_327

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_305

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT1_296

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT1_294

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT1_288

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_540

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT1_285

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT2_489

description: single cell DNA methylome seq


title: scTrioSeq2Met_CRC01_PT1_239

description: single cell DNA methylome seq