title: GM12878 cell number 790

description:
GBC_132-2-Ad1-41-Ad2-86_S590
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 802

status: Public on Dec 20 2018

type: SRA

city: Stanford

first: Paul

last: Khavari

state: CA

address: 269 Campus Drive, CCSR 2150

country: USA

institute: Stanford University

description:
GBC_132-40-Ad1-47-Ad2-91_S739
GBC_counts_GM12878_experiment2.txt

library_source: transcriptomic

data_processing:
Library strategy: Perturb-ATAC-seq
For GBC mapping, any read not containing the expected 27 nt sequence prior to the GBC was discarded, allowing for a maximum Levenshtein distance of 2 to account for sequencing errors.  The subsequent 22 nt sequence was then compared to a list of GBC sequences, allowing for a maximum Levenshtein distance of 3 to be considered a match.  Note that the minimum Levenshtein distance between any two of our GBC sequences was 10. This generated a counts-per-cell table for each GBC sequence and cell. For sgRNA mapping, raw reads for sgRNA sequencing were matched to a list of sgRNA sequences used in the experiment. We required strict matching of the 20bp variable sequence along with 18bp of the standard sgRNA backbone. This resulted in the counts-per-cell table for each sgRNA.
Genome_build: hg19
Supplementary_files_format_and_content: Table of raw GBC or sgRNA counts per cell. Each row represents an individual cell and each column represents a distinct GBC or sgRNA considered in the experiment.

molecule: total RNA

organism: Homo sapiens

source_name: GM12878 cell line

growth_protocol: GM1878 cells were grown in RPMI 1640 with 10% FBS and 1% pen/strep. Human primary keratinocytes were cultured in 50/50 growth media and induced to differentiated for three or six days as previously described (Zarnegar et al., 2012)

extract_protocol: Single cells were captured using the C1 Single-Cell Auto Prep IFC microfluidic chips and assayed using the transcript-indexed single-cell ATAC-seq protocol. In a 96-well plate, 6.5 µL from a total of 15ul of harvested libraries were amplified in a 20 µL PCR for an additional 17 cycles (1uM each V1 primer, 1x NEBnext High-Fidelity PCR Master Mix) using the following PCR conditions: 98°C for 30 s, and cycling at 98°C for 10 s, 63°C for 30 s, and 72°C for 45 s. Then 2ul of the previous V1 PCR reaction were transferred to a nested V2 PCR reaction with V2 primers at the same concentration and using same cycling parameters as the V1 reaction, for 15 cycles. Next 2ul of the previous V2 PCR reaction were transferred to a cell barcoding V3 PCR reaction with V3 primers at the same concentration and using the same cycling parameters as the V2 reaction, for 15 cycles. Finally V3 reactions were pooled, purified, sized selected via PAGE, and quantified by qPCR prior to sequencing.

tag: cell type

value: GM12878 cell line


title: GM12878 cell 986

description:
Peak_counts_GM12878_experiment2.txt.gz
135-33-Ad1-30-Ad2-39_S327

library_source: genomic

data_processing:
For ATAC-seq data: adapter sequence trimming, mapping to Hg19 using Bowtie2, and PCR duplicate removal using Picard Tools was performed. ATAC-seq peaks were called with MACS2 and reads in each peak were counted for each sample.
Genome_build: hg19
Supplementary_files_format_and_content: ATAC-seq counts table file; adapter trimmed, reads aligned, pcr duplicates removed, and reads in ATAC-seq peaks counted

molecule: genomic DNA

extract_protocol: Single cells were captured using the C1 Single-Cell Auto Prep IFC microfluidic chips and assayed using the single-cell ATAC-seq protocol. In a 96-well plate, 6-7 µL from a total of 15ul of harvested libraries were amplified in 50 µL PCR for an additional 14 cycles (1.25 µM custom Nextera dual-index PCR primers in 1x NEBnext High-Fidelity PCR Master Mix) using the following PCR conditions: 72°C for 5min; 98°C for 30 s; and thermocycling at 98°C for 10 s, 72°C for 30 s, and 72°C for 1 min. Pooled libraries were purified and quantified using qPCR prior to sequencing.


title: GM12878 cell number 789

description:
GBC_132-29-Ad1-45-Ad2-92_S692
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 987

description:
Peak_counts_GM12878_experiment2.txt.gz
135-34-Ad1-30-Ad2-43_S331


title: GM12878 cell 985

description:
Peak_counts_GM12878_experiment2.txt.gz
135-32-Ad1-30-Ad2-38_S326


title: GM12878 cell number 788

description:
GBC_132-28-Ad1-45-Ad2-91_S691
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 984

description:
Peak_counts_GM12878_experiment2.txt.gz
135-31-Ad1-30-Ad2-37_S325


title: GM12878 cell 983

description:
Peak_counts_GM12878_experiment2.txt.gz
135-30-Ad1-29-Ad2-45_S309


title: GM12878 cell number 787

description:
GBC_132-27-Ad1-45-Ad2-87_S687
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 982

description:
Peak_counts_GM12878_experiment2.txt.gz
135-2-Ad1-25-Ad2-38_S206


title: GM12878 cell number 785

description:
GBC_132-25-Ad1-45-Ad2-85_S685
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 981

description:
Peak_counts_GM12878_experiment2.txt.gz
135-29-Ad1-29-Ad2-44_S308


title: GM12878 cell number 784

description:
GBC_132-24-Ad1-44-Ad2-91_S667
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 797

description:
GBC_132-36-Ad1-46-Ad2-93_S717
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 993

description:
Peak_counts_GM12878_experiment2.txt.gz
135-3-Ad1-25-Ad2-37_S205


title: GM12878 cell 980

description:
Peak_counts_GM12878_experiment2.txt.gz
135-28-Ad1-29-Ad2-43_S307


title: GM12878 cell 992

description:
Peak_counts_GM12878_experiment2.txt.gz
135-39-Ad1-31-Ad2-39_S351


title: GM12878 cell number 783

description:
GBC_132-23-Ad1-44-Ad2-92_S668
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 979

description:
Peak_counts_GM12878_experiment2.txt.gz
135-27-Ad1-29-Ad2-39_S303


title: GM12878 cell number 782

description:
GBC_132-22-Ad1-44-Ad2-93_S669
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 989

description:
Peak_counts_GM12878_experiment2.txt.gz
135-36-Ad1-30-Ad2-45_S333


title: GM12878 cell number 781

description:
GBC_132-21-Ad1-44-Ad2-85_S661
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 780

description:
GBC_132-20-Ad1-44-Ad2-86_S662
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 977

description:
Peak_counts_GM12878_experiment2.txt.gz
135-25-Ad1-29-Ad2-37_S301


title: GM12878 cell 978

description:
Peak_counts_GM12878_experiment2.txt.gz
135-26-Ad1-29-Ad2-38_S302


title: GM12878 cell number 779

description:
GBC_132-1-Ad1-41-Ad2-87_S591
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 976

description:
Peak_counts_GM12878_experiment2.txt.gz
135-24-Ad1-28-Ad2-43_S283


title: GM12878 cell 975

description:
Peak_counts_GM12878_experiment2.txt.gz
135-23-Ad1-28-Ad2-44_S284


title: GM12878 cell 974

description:
Peak_counts_GM12878_experiment2.txt.gz
135-22-Ad1-28-Ad2-45_S285


title: GM12878 cell number 777

description:
GBC_132-18-Ad1-43-Ad2-91_S643
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 776

description:
GBC_132-17-Ad1-43-Ad2-92_S644
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 973

description:
Peak_counts_GM12878_experiment2.txt.gz
135-21-Ad1-28-Ad2-37_S277


title: GM12878 cell number 778

description:
GBC_132-19-Ad1-44-Ad2-87_S663
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 972

description:
Peak_counts_GM12878_experiment2.txt.gz
135-20-Ad1-28-Ad2-38_S278


title: GM12878 cell 971

description:
Peak_counts_GM12878_experiment2.txt.gz
135-1-Ad1-25-Ad2-39_S207


title: GM12878 cell number 775

description:
GBC_132-16-Ad1-43-Ad2-93_S645
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 773

description:
GBC_132-14-Ad1-43-Ad2-86_S638
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 786

description:
GBC_132-26-Ad1-45-Ad2-86_S686
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 774

description:
GBC_132-15-Ad1-43-Ad2-85_S637
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 969

description:
Peak_counts_GM12878_experiment2.txt.gz
135-18-Ad1-27-Ad2-43_S259


title: GM12878 cell number 771

description:
GBC_132-12-Ad1-42-Ad2-91_S619
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 967

description:
Peak_counts_GM12878_experiment2.txt.gz
135-16-Ad1-27-Ad2-45_S261


title: GM12878 cell number 772

description:
GBC_132-13-Ad1-43-Ad2-87_S639
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 970

description:
Peak_counts_GM12878_experiment2.txt.gz
135-19-Ad1-28-Ad2-39_S279


title: GM12878 cell number 769

description:
GBC_132-10-Ad1-42-Ad2-93_S621
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 968

description:
Peak_counts_GM12878_experiment2.txt.gz
135-17-Ad1-27-Ad2-44_S260


title: GM12878 cell number 768

description:
GBC_095-9-Ad1-42-Ad2-73_S437
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 966

description:
Peak_counts_GM12878_experiment2.txt.gz
135-15-Ad1-27-Ad2-37_S253


title: GM12878 cell 964

description:
Peak_counts_GM12878_experiment2.txt.gz
135-13-Ad1-27-Ad2-39_S255


title: GM12878 cell number 767

description:
GBC_095-96-Ad1-48-Ad2-82_S518
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 965

description:
Peak_counts_GM12878_experiment2.txt.gz
135-14-Ad1-27-Ad2-38_S254


title: GM12878 cell 962

description:
Peak_counts_GM12878_experiment2.txt.gz
135-11-Ad1-26-Ad2-44_S236


title: GM12878 cell 963

description:
Peak_counts_GM12878_experiment2.txt.gz
135-12-Ad1-26-Ad2-43_S235


title: GM12878 cell number 770

description:
GBC_132-11-Ad1-42-Ad2-92_S620
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 765

description:
GBC_095-94-Ad1-48-Ad2-84_S520
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 764

description:
GBC_095-93-Ad1-48-Ad2-76_S512
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 763

description:
GBC_095-92-Ad1-48-Ad2-77_S513
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 960

description:
Peak_counts_GM12878_experiment2.txt.gz
134-9-Ad1-26-Ad2-25_S217


title: GM12878 cell number 762

description:
GBC_095-91-Ad1-48-Ad2-78_S514
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 958

description:
Peak_counts_GM12878_experiment2.txt.gz
134-95-Ad1-32-Ad2-35_S371


title: GM12878 cell number 761

description:
GBC_095-90-Ad1-47-Ad2-82_S506
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 760

description:
GBC_095-8-Ad1-42-Ad2-74_S438
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 759

description:
GBC_095-89-Ad1-47-Ad2-83_S507
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 954

description:
Peak_counts_GM12878_experiment2.txt.gz
134-91-Ad1-32-Ad2-30_S366


title: GM12878 cell number 758

description:
GBC_095-88-Ad1-47-Ad2-84_S508
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 955

description:
Peak_counts_GM12878_experiment2.txt.gz
134-92-Ad1-32-Ad2-29_S365


title: GM12878 cell 953

description:
Peak_counts_GM12878_experiment2.txt.gz
134-90-Ad1-31-Ad2-34_S346


title: GM12878 cell number 756

description:
GBC_095-86-Ad1-47-Ad2-77_S501
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 757

description:
GBC_095-87-Ad1-47-Ad2-76_S500
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 755

description:
GBC_095-85-Ad1-47-Ad2-78_S502
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 754

description:
GBC_095-84-Ad1-46-Ad2-82_S494
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 753

description:
GBC_095-83-Ad1-46-Ad2-83_S495
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 949

description:
Peak_counts_GM12878_experiment2.txt.gz
134-87-Ad1-31-Ad2-28_S340


title: GM12878 cell 951

description:
Peak_counts_GM12878_experiment2.txt.gz
134-89-Ad1-31-Ad2-35_S347


title: GM12878 cell number 766

description:
GBC_095-95-Ad1-48-Ad2-83_S519
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 752

description:
GBC_095-82-Ad1-46-Ad2-84_S496
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 751

description:
GBC_095-81-Ad1-46-Ad2-76_S488
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 950

description:
Peak_counts_GM12878_experiment2.txt.gz
134-88-Ad1-31-Ad2-36_S348


title: GM12878 cell 961

description:
Peak_counts_GM12878_experiment2.txt.gz
135-10-Ad1-26-Ad2-45_S237


title: GM12878 cell 948

description:
Peak_counts_GM12878_experiment2.txt.gz
134-86-Ad1-31-Ad2-29_S341


title: GM12878 cell 947

description:
Peak_counts_GM12878_experiment2.txt.gz
134-85-Ad1-31-Ad2-30_S342


title: GM12878 cell 952

description:
Peak_counts_GM12878_experiment2.txt.gz
134-8-Ad1-26-Ad2-26_S218


title: GM12878 cell 957

description:
Peak_counts_GM12878_experiment2.txt.gz
134-94-Ad1-32-Ad2-36_S372


title: GM12878 cell 959

description:
Peak_counts_GM12878_experiment2.txt.gz
134-96-Ad1-32-Ad2-34_S370


title: GM12878 cell 944

description:
Peak_counts_GM12878_experiment2.txt.gz
134-82-Ad1-30-Ad2-36_S324


title: GM12878 cell number 746

description:
GBC_095-77-Ad1-45-Ad2-83_S483
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 749

description:
GBC_095-7-Ad1-42-Ad2-75_S439
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 750

description:
GBC_095-80-Ad1-46-Ad2-77_S489
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 748

description:
GBC_095-79-Ad1-46-Ad2-78_S490
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 956

description:
Peak_counts_GM12878_experiment2.txt.gz
134-93-Ad1-32-Ad2-28_S364


title: GM12878 cell 943

description:
Peak_counts_GM12878_experiment2.txt.gz
134-81-Ad1-30-Ad2-28_S316


title: GM12878 cell 946

description:
Peak_counts_GM12878_experiment2.txt.gz
134-84-Ad1-30-Ad2-34_S322


title: GM12878 cell 945

description:
Peak_counts_GM12878_experiment2.txt.gz
134-83-Ad1-30-Ad2-35_S323


title: GM12878 cell 939

description:
Peak_counts_GM12878_experiment2.txt.gz
134-78-Ad1-29-Ad2-34_S298


title: GM12878 cell 940

description:
Peak_counts_GM12878_experiment2.txt.gz
134-79-Ad1-30-Ad2-30_S318


title: GM12878 cell number 743

description:
GBC_095-74-Ad1-45-Ad2-77_S477
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 942

description:
Peak_counts_GM12878_experiment2.txt.gz
134-80-Ad1-30-Ad2-29_S317


title: GM12878 cell number 742

description:
GBC_095-73-Ad1-45-Ad2-78_S478
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 744

description:
GBC_095-75-Ad1-45-Ad2-76_S476
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 936

description:
Peak_counts_GM12878_experiment2.txt.gz
134-75-Ad1-29-Ad2-28_S292


title: GM12878 cell 937

description:
Peak_counts_GM12878_experiment2.txt.gz
134-76-Ad1-29-Ad2-36_S300


title: GM12878 cell 941

description:
Peak_counts_GM12878_experiment2.txt.gz
134-7-Ad1-26-Ad2-27_S219


title: GM12878 cell number 739

description:
GBC_095-70-Ad1-44-Ad2-82_S470
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 938

description:
Peak_counts_GM12878_experiment2.txt.gz
134-77-Ad1-29-Ad2-35_S299


title: GM12878 cell number 738

description:
GBC_095-6-Ad1-41-Ad2-79_S431
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 740

description:
GBC_095-71-Ad1-44-Ad2-83_S471
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 935

description:
Peak_counts_GM12878_experiment2.txt.gz
134-74-Ad1-29-Ad2-29_S293


title: GM12878 cell 934

description:
Peak_counts_GM12878_experiment2.txt.gz
134-73-Ad1-29-Ad2-30_S294


title: GM12878 cell number 737

description:
GBC_095-69-Ad1-44-Ad2-78_S466
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 747

description:
GBC_095-78-Ad1-45-Ad2-82_S482
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 745

description:
GBC_095-76-Ad1-45-Ad2-84_S484
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 735

description:
GBC_095-67-Ad1-44-Ad2-76_S464
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 736

description:
GBC_095-68-Ad1-44-Ad2-77_S465
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 932

description:
Peak_counts_GM12878_experiment2.txt.gz
134-71-Ad1-28-Ad2-35_S275


title: GM12878 cell number 733

description:
GBC_095-65-Ad1-43-Ad2-83_S459
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 933

description:
Peak_counts_GM12878_experiment2.txt.gz
134-72-Ad1-28-Ad2-36_S276


title: GM12878 cell 931

description:
Peak_counts_GM12878_experiment2.txt.gz
134-70-Ad1-28-Ad2-34_S274


title: GM12878 cell number 732

description:
GBC_095-64-Ad1-43-Ad2-82_S458
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 928

description:
Peak_counts_GM12878_experiment2.txt.gz
134-68-Ad1-28-Ad2-29_S269


title: GM12878 cell number 741

description:
GBC_095-72-Ad1-44-Ad2-84_S472
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 927

description:
Peak_counts_GM12878_experiment2.txt.gz
134-67-Ad1-28-Ad2-28_S268


title: GM12878 cell 929

description:
Peak_counts_GM12878_experiment2.txt.gz
134-69-Ad1-28-Ad2-30_S270


title: GM12878 cell 930

description:
Peak_counts_GM12878_experiment2.txt.gz
134-6-Ad1-25-Ad2-31_S199


title: GM12878 cell number 734

description:
GBC_095-66-Ad1-43-Ad2-84_S460
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 729

description:
GBC_095-61-Ad1-43-Ad2-76_S452
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 925

description:
Peak_counts_GM12878_experiment2.txt.gz
134-65-Ad1-27-Ad2-35_S251


title: GM12878 cell number 727

description:
GBC_095-5-Ad1-41-Ad2-80_S432
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 730

description:
GBC_095-62-Ad1-43-Ad2-77_S453
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 923

description:
Peak_counts_GM12878_experiment2.txt.gz
134-63-Ad1-27-Ad2-30_S246


title: GM12878 cell 921

description:
Peak_counts_GM12878_experiment2.txt.gz
134-61-Ad1-27-Ad2-28_S244


title: GM12878 cell 924

description:
Peak_counts_GM12878_experiment2.txt.gz
134-64-Ad1-27-Ad2-34_S250


title: GM12878 cell number 724

description:
GBC_095-57-Ad1-42-Ad2-78_S442
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 920

description:
Peak_counts_GM12878_experiment2.txt.gz
134-60-Ad1-26-Ad2-36_S228


title: GM12878 cell number 725

description:
GBC_095-58-Ad1-42-Ad2-82_S446
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 926

description:
Peak_counts_GM12878_experiment2.txt.gz
134-66-Ad1-27-Ad2-36_S252


title: GM12878 cell number 731

description:
GBC_095-63-Ad1-43-Ad2-78_S454
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 919

description:
Peak_counts_GM12878_experiment2.txt.gz
134-5-Ad1-25-Ad2-32_S200


title: GM12878 cell number 726

description:
GBC_095-59-Ad1-42-Ad2-83_S447
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 728

description:
GBC_095-60-Ad1-42-Ad2-84_S448
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title: GM12878 cell number 723

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GBC_095-56-Ad1-42-Ad2-77_S441
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 722

description:
GBC_095-55-Ad1-42-Ad2-76_S440
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title: GM12878 cell 918

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title: GM12878 cell number 721

description:
GBC_095-54-Ad1-41-Ad2-84_S436
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 720

description:
GBC_095-53-Ad1-41-Ad2-83_S435
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title: GM12878 cell 916

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title: GM12878 cell 917

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134-58-Ad1-26-Ad2-34_S226


title: GM12878 cell number 719

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GBC_095-52-Ad1-41-Ad2-82_S434
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 718

description:
GBC_095-51-Ad1-41-Ad2-78_S430
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title: GM12878 cell 922

description:
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134-62-Ad1-27-Ad2-29_S245


title: GM12878 cell number 717

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GBC_095-50-Ad1-41-Ad2-77_S429
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title: GM12878 cell number 715

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GBC_095-49-Ad1-41-Ad2-76_S428
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title: GM12878 cell 911

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title: GM12878 cell 915

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title: GM12878 cell 914

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title: GM12878 cell 913

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title: GM12878 cell number 716

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GBC_095-4-Ad1-41-Ad2-81_S433
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title: GM12878 cell 912

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title: GM12878 cell 909

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title: GM12878 cell number 714

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GBC_095-48-Ad1-48-Ad2-81_S517
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title: GM12878 cell 910

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title: GM12878 cell 907

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134-49-Ad1-25-Ad2-28_S196


title: GM12878 cell number 713

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GBC_095-47-Ad1-48-Ad2-80_S516
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title: GM12878 cell 908

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title: GM12878 cell number 712

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GBC_095-46-Ad1-48-Ad2-79_S515
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title: GM12878 cell number 711

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GBC_095-45-Ad1-48-Ad2-75_S511
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 906

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title: GM12878 cell 905

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title: GM12878 cell number 709

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GBC_095-43-Ad1-48-Ad2-73_S509
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 708

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GBC_095-42-Ad1-47-Ad2-81_S505
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 710

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GBC_095-44-Ad1-48-Ad2-74_S510
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title: GM12878 cell 904

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title: GM12878 cell 902

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title: GM12878 cell 903

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title: GM12878 cell number 706

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GBC_095-40-Ad1-47-Ad2-79_S503
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 707

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GBC_095-41-Ad1-47-Ad2-80_S504
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 705

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GBC_095-3-Ad1-41-Ad2-73_S425
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 704

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GBC_095-39-Ad1-47-Ad2-75_S499
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 900

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title: GM12878 cell number 703

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GBC_095-38-Ad1-47-Ad2-74_S498
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title: GM12878 cell 898

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134-40-Ad1-31-Ad2-31_S343


title: GM12878 cell number 702

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GBC_095-37-Ad1-47-Ad2-73_S497
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title: GM12878 cell number 701

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GBC_095-36-Ad1-46-Ad2-81_S493
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title: GM12878 cell 897

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title: GM12878 cell number 700

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GBC_095-35-Ad1-46-Ad2-80_S492
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title: GM12878 cell number 699

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GBC_095-34-Ad1-46-Ad2-79_S491
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 895

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title: GM12878 cell 893

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title: GM12878 cell number 696

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GBC_095-31-Ad1-46-Ad2-73_S485
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title: GM12878 cell 892

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134-35-Ad1-30-Ad2-32_S320


title: GM12878 cell number 698

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GBC_095-33-Ad1-46-Ad2-75_S487
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title: GM12878 cell number 697

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GBC_095-32-Ad1-46-Ad2-74_S486
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 695

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GBC_095-30-Ad1-45-Ad2-81_S481
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title: GM12878 cell 891

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134-34-Ad1-30-Ad2-31_S319


title: GM12878 cell number 693

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GBC_095-29-Ad1-45-Ad2-80_S480
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title: GM12878 cell 901

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134-43-Ad1-32-Ad2-25_S361


title: GM12878 cell number 694

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title: GM12878 cell 889

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title: GM12878 cell 890

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title: GM12878 cell number 690

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title: GM12878 cell number 691

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GBC_095-27-Ad1-45-Ad2-75_S475
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title: GM12878 cell 888

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title: GM12878 cell 887

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title: GM12878 cell number 692

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GBC_095-28-Ad1-45-Ad2-79_S479
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title: GM12878 cell 899

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title: GM12878 cell 886

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title: GM12878 cell number 689

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GBC_095-25-Ad1-45-Ad2-73_S473
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title: GM12878 cell 896

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title: GM12878 cell number 688

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GBC_095-24-Ad1-44-Ad2-79_S467
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 884

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title: GM12878 cell 885

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title: GM12878 cell number 687

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GBC_095-23-Ad1-44-Ad2-80_S468
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 686

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GBC_095-22-Ad1-44-Ad2-81_S469
GBC_counts_GM12878_experiment2.txt


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title: GM12878 cell 882

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title: GM12878 cell number 685

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GBC_095-21-Ad1-44-Ad2-73_S461
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title: GM12878 cell number 683

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GBC_095-1-Ad1-41-Ad2-75_S427
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 682

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GBC_095-19-Ad1-44-Ad2-75_S463
GBC_counts_GM12878_experiment2.txt


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title: GM12878 cell 878

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title: GM12878 cell 879

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134-23-Ad1-28-Ad2-32_S272


title: GM12878 cell number 680

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GBC_095-17-Ad1-43-Ad2-80_S456
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 681

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GBC_095-18-Ad1-43-Ad2-79_S455
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title: GM12878 cell number 678

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title: GM12878 cell 873

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title: GM12878 cell 872

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134-17-Ad1-27-Ad2-32_S248


title: GM12878 cell 883

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title: GM12878 cell number 677

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GBC_095-14-Ad1-43-Ad2-74_S450
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title: GM12878 cell number 675

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GBC_095-12-Ad1-42-Ad2-79_S443
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 871

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134-16-Ad1-27-Ad2-33_S249


title: GM12878 cell number 673

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GBC_095-10-Ad1-42-Ad2-81_S445
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 676

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GBC_095-13-Ad1-43-Ad2-75_S451
GBC_counts_GM12878_experiment2.txt


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GBC_095-20-Ad1-44-Ad2-74_S462
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 671

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GBC_093-96-Ad1-24-Ad2-22_S134
GBC_counts_GM12878_experiment2.txt


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title: GM12878 cell 867

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134-12-Ad1-26-Ad2-31_S223


title: GM12878 cell 868

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134-13-Ad1-27-Ad2-27_S243


title: GM12878 cell 870

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134-15-Ad1-27-Ad2-25_S241


title: GM12878 cell number 670

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GBC_093-95-Ad1-24-Ad2-23_S135
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134-11-Ad1-26-Ad2-32_S224


title: GM12878 cell number 669

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GBC_093-94-Ad1-24-Ad2-24_S136
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title: GM12878 cell 865

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134-10-Ad1-26-Ad2-33_S225


title: GM12878 cell number 668

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GBC_093-93-Ad1-24-Ad2-16_S128
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 864

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title: GM12878 cell number 667

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title: GM12878 cell 863

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title: GM12878 cell 862

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title: GM12878 cell number 665

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GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 674

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GBC_095-11-Ad1-42-Ad2-80_S444
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title: GM12878 cell 857

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title: GM12878 cell number 661

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GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 664

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GBC_093-8-Ad1-18-Ad2-14_S54
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 672

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GBC_093-9-Ad1-18-Ad2-13_S53
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 663

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GBC_093-89-Ad1-23-Ad2-23_S123
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 856

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title: GM12878 cell number 660

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title: GM12878 cell 860

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GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 658

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GBC_093-84-Ad1-22-Ad2-22_S110
GBC_counts_GM12878_experiment2.txt


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GBC_093-81-Ad1-22-Ad2-16_S104
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132-86-Ad1-47-Ad2-89_S737


title: GM12878 cell 850

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GBC_counts_GM12878_experiment2.txt


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GBC_counts_GM12878_experiment2.txt


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title: GM12878 cell 843

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title: GM12878 cell 853

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132-87-Ad1-47-Ad2-88_S736


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GBC_counts_GM12878_experiment2.txt


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GBC_093-76-Ad1-21-Ad2-24_S100
GBC_counts_GM12878_experiment2.txt


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title: GM12878 cell 844

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title: GM12878 cell 845

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GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 646

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GBC_counts_GM12878_experiment2.txt


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GBC_counts_GM12878_experiment2.txt


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title: GM12878 cell number 566

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GBC_092-88-Ad1-23-Ad2-12_S604
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 565

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GBC_092-87-Ad1-23-Ad2-4_S596
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 761

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Peak_counts_GM12878_experiment2.txt.gz
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title: GM12878 cell number 564

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GBC_092-86-Ad1-23-Ad2-5_S597
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 563

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GBC_092-85-Ad1-23-Ad2-6_S598
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 759

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Peak_counts_GM12878_experiment2.txt.gz
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title: GM12878 cell 760

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Peak_counts_GM12878_experiment2.txt.gz
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title: GM12878 cell number 561

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GBC_092-83-Ad1-22-Ad2-11_S591
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 758

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title: GM12878 cell 757

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title: GM12878 cell 755

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Peak_counts_GM12878_experiment2.txt.gz
095-85-Ad1-47-Ad2-78_S470


title: GM12878 cell number 559

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GBC_092-81-Ad1-22-Ad2-4_S584
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 558

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GBC_092-80-Ad1-22-Ad2-5_S585
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 756

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title: GM12878 cell 754

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Peak_counts_GM12878_experiment2.txt.gz
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title: GM12878 cell number 557

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GBC_092-7-Ad1-18-Ad2-3_S535
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title: GM12878 cell 753

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title: GM12878 cell number 556

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GBC_092-79-Ad1-22-Ad2-6_S586
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title: GM12878 cell 751

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title: GM12878 cell 752

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title: GM12878 cell 750

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title: GM12878 cell number 553

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GBC_092-76-Ad1-21-Ad2-12_S580
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 554

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GBC_092-77-Ad1-21-Ad2-11_S579
GBC_counts_GM12878_experiment2.txt


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GBC_092-78-Ad1-21-Ad2-10_S578
GBC_counts_GM12878_experiment2.txt


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GBC_092-75-Ad1-21-Ad2-4_S572
GBC_counts_GM12878_experiment2.txt


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title: GM12878 cell 746

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Peak_counts_GM12878_experiment2.txt.gz
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GBC_092-74-Ad1-21-Ad2-5_S573
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GBC_092-73-Ad1-21-Ad2-6_S574
GBC_counts_GM12878_experiment2.txt


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GBC_092-72-Ad1-20-Ad2-12_S568
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GBC_092-84-Ad1-22-Ad2-10_S590
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GBC_092-6-Ad1-17-Ad2-7_S527
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GBC_counts_GM12878_experiment2.txt


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GBC_092-71-Ad1-20-Ad2-11_S567
GBC_counts_GM12878_experiment2.txt


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GBC_counts_GM12878_experiment2.txt


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GBC_092-68-Ad1-20-Ad2-5_S561
GBC_counts_GM12878_experiment2.txt


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GBC_092-64-Ad1-19-Ad2-10_S554
GBC_counts_GM12878_experiment2.txt


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GBC_092-65-Ad1-19-Ad2-11_S555
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GBC_092-63-Ad1-19-Ad2-6_S550
GBC_counts_GM12878_experiment2.txt


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GBC_092-62-Ad1-19-Ad2-5_S549
GBC_counts_GM12878_experiment2.txt


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GBC_092-61-Ad1-19-Ad2-4_S548
GBC_counts_GM12878_experiment2.txt


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GBC_092-66-Ad1-19-Ad2-12_S556
GBC_counts_GM12878_experiment2.txt


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GBC_092-60-Ad1-18-Ad2-12_S544
GBC_counts_GM12878_experiment2.txt


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title: GM12878 cell 735

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GBC_092-5-Ad1-17-Ad2-8_S528
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GBC_092-56-Ad1-18-Ad2-5_S537
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GBC_092-54-Ad1-17-Ad2-12_S532
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GBC_092-51-Ad1-17-Ad2-6_S526
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title: GM12878 cell 720

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GBC_092-49-Ad1-17-Ad2-4_S524
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GBC_092-48-Ad1-24-Ad2-9_S613
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GBC_092-58-Ad1-18-Ad2-10_S542
GBC_counts_GM12878_experiment2.txt


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GBC_counts_GM12878_experiment2.txt


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GBC_counts_GM12878_experiment2.txt


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GBC_092-29-Ad1-21-Ad2-8_S576
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title: GM12878 cell 696

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GBC_counts_GM12878_experiment2.txt


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GBC_092-24-Ad1-20-Ad2-7_S563
GBC_counts_GM12878_experiment2.txt


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GBC_counts_GM12878_experiment2.txt


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GBC_092-22-Ad1-20-Ad2-9_S565
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title: GM12878 cell 690

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095-24-Ad1-44-Ad2-79_S435


title: GM12878 cell 698

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title: GM12878 cell 686

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GBC_092-17-Ad1-19-Ad2-8_S552
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GBC_092-19-Ad1-20-Ad2-3_S559
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description:
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095-20-Ad1-44-Ad2-74_S430


title: GM12878 cell 683

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095-1-Ad1-41-Ad2-75_S395


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description:
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GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 682

description:
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title: GM12878 cell number 485

description:
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title: GM12878 cell 693

description:
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