title: GM12878 cell 542

description:
Peak_counts_GM12878_experiment2.txt.gz
092-66-Ad1-19-Ad2-12_S428


title: GM12878 cell number 346

status: Public on Dec 20 2018

type: SRA

city: Stanford

first: Paul

last: Khavari

state: CA

address: 269 Campus Drive, CCSR 2150

country: USA

institute: Stanford University

description:
GBC_090-62-Ad1-27-Ad2-41_S69
GBC_counts_GM12878_experiment1.txt

library_source: transcriptomic

data_processing:
Library strategy: Perturb-ATAC-seq
For GBC mapping, any read not containing the expected 27 nt sequence prior to the GBC was discarded, allowing for a maximum Levenshtein distance of 2 to account for sequencing errors.  The subsequent 22 nt sequence was then compared to a list of GBC sequences, allowing for a maximum Levenshtein distance of 3 to be considered a match.  Note that the minimum Levenshtein distance between any two of our GBC sequences was 10. This generated a counts-per-cell table for each GBC sequence and cell. For sgRNA mapping, raw reads for sgRNA sequencing were matched to a list of sgRNA sequences used in the experiment. We required strict matching of the 20bp variable sequence along with 18bp of the standard sgRNA backbone. This resulted in the counts-per-cell table for each sgRNA.
Genome_build: hg19
Supplementary_files_format_and_content: Table of raw GBC or sgRNA counts per cell. Each row represents an individual cell and each column represents a distinct GBC or sgRNA considered in the experiment.

molecule: total RNA

organism: Homo sapiens

source_name: GM12878 cell line

growth_protocol: GM1878 cells were grown in RPMI 1640 with 10% FBS and 1% pen/strep. Human primary keratinocytes were cultured in 50/50 growth media and induced to differentiated for three or six days as previously described (Zarnegar et al., 2012)

extract_protocol: Single cells were captured using the C1 Single-Cell Auto Prep IFC microfluidic chips and assayed using the transcript-indexed single-cell ATAC-seq protocol. In a 96-well plate, 6.5 µL from a total of 15ul of harvested libraries were amplified in a 20 µL PCR for an additional 17 cycles (1uM each V1 primer, 1x NEBnext High-Fidelity PCR Master Mix) using the following PCR conditions: 98°C for 30 s, and cycling at 98°C for 10 s, 63°C for 30 s, and 72°C for 45 s. Then 2ul of the previous V1 PCR reaction were transferred to a nested V2 PCR reaction with V2 primers at the same concentration and using same cycling parameters as the V1 reaction, for 15 cycles. Next 2ul of the previous V2 PCR reaction were transferred to a cell barcoding V3 PCR reaction with V3 primers at the same concentration and using the same cycling parameters as the V2 reaction, for 15 cycles. Finally V3 reactions were pooled, purified, sized selected via PAGE, and quantified by qPCR prior to sequencing.

tag: cell type

value: GM12878 cell line


title: GM12878 cell 541

description:
Peak_counts_GM12878_experiment2.txt.gz
092-65-Ad1-19-Ad2-11_S427

library_source: genomic

data_processing:
For ATAC-seq data: adapter sequence trimming, mapping to Hg19 using Bowtie2, and PCR duplicate removal using Picard Tools was performed. ATAC-seq peaks were called with MACS2 and reads in each peak were counted for each sample.
Genome_build: hg19
Supplementary_files_format_and_content: ATAC-seq counts table file; adapter trimmed, reads aligned, pcr duplicates removed, and reads in ATAC-seq peaks counted

molecule: genomic DNA

extract_protocol: Single cells were captured using the C1 Single-Cell Auto Prep IFC microfluidic chips and assayed using the single-cell ATAC-seq protocol. In a 96-well plate, 6-7 µL from a total of 15ul of harvested libraries were amplified in 50 µL PCR for an additional 14 cycles (1.25 µM custom Nextera dual-index PCR primers in 1x NEBnext High-Fidelity PCR Master Mix) using the following PCR conditions: 72°C for 5min; 98°C for 30 s; and thermocycling at 98°C for 10 s, 72°C for 30 s, and 72°C for 1 min. Pooled libraries were purified and quantified using qPCR prior to sequencing.


title: GM12878 cell number 352

description:
GBC_090-68-Ad1-28-Ad2-41_S81
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 540

description:
Peak_counts_GM12878_experiment2.txt.gz
092-64-Ad1-19-Ad2-10_S426


title: GM12878 cell number 347

description:
GBC_090-63-Ad1-27-Ad2-42_S70
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 344

description:
GBC_090-60-Ad1-26-Ad2-48_S64
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 544

description:
Peak_counts_GM12878_experiment2.txt.gz
092-68-Ad1-20-Ad2-5_S433


title: GM12878 cell number 343

description:
GBC_090-5-Ad1-25-Ad2-44_S48
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 552

description:
Peak_counts_GM12878_experiment2.txt.gz
092-75-Ad1-21-Ad2-4_S444


title: GM12878 cell 539

description:
Peak_counts_GM12878_experiment2.txt.gz
092-63-Ad1-19-Ad2-6_S422


title: GM12878 cell number 342

description:
GBC_090-59-Ad1-26-Ad2-47_S63
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 538

description:
Peak_counts_GM12878_experiment2.txt.gz
092-62-Ad1-19-Ad2-5_S421


title: GM12878 cell 547

description:
Peak_counts_GM12878_experiment2.txt.gz
092-70-Ad1-20-Ad2-10_S438


title: GM12878 cell number 340

description:
GBC_090-57-Ad1-26-Ad2-42_S58
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 537

description:
Peak_counts_GM12878_experiment2.txt.gz
092-61-Ad1-19-Ad2-4_S420


title: GM12878 cell 536

description:
Peak_counts_GM12878_experiment2.txt.gz
092-60-Ad1-18-Ad2-12_S416


title: GM12878 cell 535

description:
Peak_counts_GM12878_experiment2.txt.gz
092-5-Ad1-17-Ad2-8_S400


title: GM12878 cell number 339

description:
GBC_090-56-Ad1-26-Ad2-41_S57
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 338

description:
GBC_090-55-Ad1-26-Ad2-40_S56
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 534

description:
Peak_counts_GM12878_experiment2.txt.gz
092-59-Ad1-18-Ad2-11_S415


title: GM12878 cell number 337

description:
GBC_090-54-Ad1-25-Ad2-48_S52
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 336

description:
GBC_090-53-Ad1-25-Ad2-47_S51
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 533

description:
Peak_counts_GM12878_experiment2.txt.gz
092-58-Ad1-18-Ad2-10_S414


title: GM12878 cell 532

description:
Peak_counts_GM12878_experiment2.txt.gz
092-57-Ad1-18-Ad2-6_S410


title: GM12878 cell 531

description:
Peak_counts_GM12878_experiment2.txt.gz
092-56-Ad1-18-Ad2-5_S409


title: GM12878 cell number 333

description:
GBC_090-50-Ad1-25-Ad2-41_S45
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 335

description:
GBC_090-52-Ad1-25-Ad2-46_S50
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 527

description:
Peak_counts_GM12878_experiment2.txt.gz
092-52-Ad1-17-Ad2-10_S402


title: GM12878 cell number 330

description:
GBC_090-48-Ad1-32-Ad2-45_S133
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 526

description:
Peak_counts_GM12878_experiment2.txt.gz
092-51-Ad1-17-Ad2-6_S398


title: GM12878 cell 529

description:
Peak_counts_GM12878_experiment2.txt.gz
092-54-Ad1-17-Ad2-12_S404


title: GM12878 cell number 329

description:
GBC_090-47-Ad1-32-Ad2-44_S132
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 341

description:
GBC_090-58-Ad1-26-Ad2-46_S62
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 331

description:
GBC_090-49-Ad1-25-Ad2-40_S44
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 524

description:
Peak_counts_GM12878_experiment2.txt.gz
092-4-Ad1-17-Ad2-9_S401


title: GM12878 cell number 332

description:
GBC_090-4-Ad1-25-Ad2-45_S49
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 328

description:
GBC_090-46-Ad1-32-Ad2-43_S131
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 327

description:
GBC_090-45-Ad1-32-Ad2-39_S127
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 522

description:
Peak_counts_GM12878_experiment2.txt.gz
092-48-Ad1-24-Ad2-9_S485


title: GM12878 cell number 326

description:
GBC_090-44-Ad1-32-Ad2-38_S126
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 523

description:
Peak_counts_GM12878_experiment2.txt.gz
092-49-Ad1-17-Ad2-4_S396


title: GM12878 cell number 324

description:
GBC_090-42-Ad1-31-Ad2-45_S121
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 521

description:
Peak_counts_GM12878_experiment2.txt.gz
092-47-Ad1-24-Ad2-8_S484


title: GM12878 cell 520

description:
Peak_counts_GM12878_experiment2.txt.gz
092-46-Ad1-24-Ad2-7_S483


title: GM12878 cell number 325

description:
GBC_090-43-Ad1-32-Ad2-37_S125
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 323

description:
GBC_090-41-Ad1-31-Ad2-44_S120
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 354

description:
GBC_090-6-Ad1-25-Ad2-43_S47
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 519

description:
Peak_counts_GM12878_experiment2.txt.gz
092-45-Ad1-24-Ad2-3_S479


title: GM12878 cell number 334

description:
GBC_090-51-Ad1-25-Ad2-42_S46
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 530

description:
Peak_counts_GM12878_experiment2.txt.gz
092-55-Ad1-18-Ad2-4_S408


title: GM12878 cell 518

description:
Peak_counts_GM12878_experiment2.txt.gz
092-44-Ad1-24-Ad2-2_S478


title: GM12878 cell number 322

description:
GBC_090-40-Ad1-31-Ad2-43_S119
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 528

description:
Peak_counts_GM12878_experiment2.txt.gz
092-53-Ad1-17-Ad2-11_S403


title: GM12878 cell number 320

description:
GBC_090-39-Ad1-31-Ad2-39_S115
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 525

description:
Peak_counts_GM12878_experiment2.txt.gz
092-50-Ad1-17-Ad2-5_S397


title: GM12878 cell 517

description:
Peak_counts_GM12878_experiment2.txt.gz
092-43-Ad1-24-Ad2-1_S477


title: GM12878 cell number 319

description:
GBC_090-38-Ad1-31-Ad2-38_S114
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 515

description:
Peak_counts_GM12878_experiment2.txt.gz
092-41-Ad1-23-Ad2-8_S472


title: GM12878 cell number 317

description:
GBC_090-36-Ad1-30-Ad2-45_S109
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 513

description:
Peak_counts_GM12878_experiment2.txt.gz
092-3-Ad1-17-Ad2-1_S393


title: GM12878 cell number 318

description:
GBC_090-37-Ad1-31-Ad2-37_S113
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 514

description:
Peak_counts_GM12878_experiment2.txt.gz
092-40-Ad1-23-Ad2-7_S471


title: GM12878 cell 512

description:
Peak_counts_GM12878_experiment2.txt.gz
092-39-Ad1-23-Ad2-3_S467


title: GM12878 cell number 315

description:
GBC_090-34-Ad1-30-Ad2-43_S107
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 316

description:
GBC_090-35-Ad1-30-Ad2-44_S108
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 313

description:
GBC_090-32-Ad1-30-Ad2-38_S102
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 314

description:
GBC_090-33-Ad1-30-Ad2-39_S103
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 510

description:
Peak_counts_GM12878_experiment2.txt.gz
092-37-Ad1-23-Ad2-1_S465


title: GM12878 cell 511

description:
Peak_counts_GM12878_experiment2.txt.gz
092-38-Ad1-23-Ad2-2_S466


title: GM12878 cell number 311

description:
GBC_090-30-Ad1-29-Ad2-45_S97
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 508

description:
Peak_counts_GM12878_experiment2.txt.gz
092-35-Ad1-22-Ad2-8_S460


title: GM12878 cell 509

description:
Peak_counts_GM12878_experiment2.txt.gz
092-36-Ad1-22-Ad2-9_S461


title: GM12878 cell number 312

description:
GBC_090-31-Ad1-30-Ad2-37_S101
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 507

description:
Peak_counts_GM12878_experiment2.txt.gz
092-34-Ad1-22-Ad2-7_S459


title: GM12878 cell 506

description:
Peak_counts_GM12878_experiment2.txt.gz
092-33-Ad1-22-Ad2-3_S455


title: GM12878 cell number 321

description:
GBC_090-3-Ad1-25-Ad2-37_S41
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 310

description:
GBC_090-2-Ad1-25-Ad2-38_S42
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 505

description:
Peak_counts_GM12878_experiment2.txt.gz
092-32-Ad1-22-Ad2-2_S454


title: GM12878 cell number 308

description:
GBC_090-28-Ad1-29-Ad2-43_S95
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 516

description:
Peak_counts_GM12878_experiment2.txt.gz
092-42-Ad1-23-Ad2-9_S473


title: GM12878 cell number 309

description:
GBC_090-29-Ad1-29-Ad2-44_S96
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 503

description:
Peak_counts_GM12878_experiment2.txt.gz
092-30-Ad1-21-Ad2-9_S449


title: GM12878 cell 504

description:
Peak_counts_GM12878_experiment2.txt.gz
092-31-Ad1-22-Ad2-1_S453


title: GM12878 cell number 307

description:
GBC_090-27-Ad1-29-Ad2-39_S91
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 306

description:
GBC_090-26-Ad1-29-Ad2-38_S90
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 501

description:
Peak_counts_GM12878_experiment2.txt.gz
092-29-Ad1-21-Ad2-8_S448


title: GM12878 cell number 304

description:
GBC_090-24-Ad1-28-Ad2-43_S83
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 499

description:
Peak_counts_GM12878_experiment2.txt.gz
092-27-Ad1-21-Ad2-3_S443


title: GM12878 cell 500

description:
Peak_counts_GM12878_experiment2.txt.gz
092-28-Ad1-21-Ad2-7_S447


title: GM12878 cell number 302

description:
GBC_090-22-Ad1-28-Ad2-45_S85
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 498

description:
Peak_counts_GM12878_experiment2.txt.gz
092-26-Ad1-21-Ad2-2_S442


title: GM12878 cell number 301

description:
GBC_090-21-Ad1-28-Ad2-37_S77
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 497

description:
Peak_counts_GM12878_experiment2.txt.gz
092-25-Ad1-21-Ad2-1_S441


title: GM12878 cell number 300

description:
GBC_090-20-Ad1-28-Ad2-38_S78
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 496

description:
Peak_counts_GM12878_experiment2.txt.gz
092-24-Ad1-20-Ad2-7_S435


title: GM12878 cell number 298

description:
GBC_090-19-Ad1-28-Ad2-39_S79
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 494

description:
Peak_counts_GM12878_experiment2.txt.gz
092-22-Ad1-20-Ad2-9_S437


title: GM12878 cell 495

description:
Peak_counts_GM12878_experiment2.txt.gz
092-23-Ad1-20-Ad2-8_S436


title: GM12878 cell number 297

description:
GBC_090-18-Ad1-27-Ad2-43_S71
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 299

description:
GBC_090-1-Ad1-25-Ad2-39_S43
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 493

description:
Peak_counts_GM12878_experiment2.txt.gz
092-21-Ad1-20-Ad2-1_S429


title: GM12878 cell 492

description:
Peak_counts_GM12878_experiment2.txt.gz
092-20-Ad1-20-Ad2-2_S430


title: GM12878 cell number 295

description:
GBC_090-16-Ad1-27-Ad2-45_S73
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 502

description:
Peak_counts_GM12878_experiment2.txt.gz
092-2-Ad1-17-Ad2-2_S394


title: GM12878 cell 490

description:
Peak_counts_GM12878_experiment2.txt.gz
092-19-Ad1-20-Ad2-3_S431


title: GM12878 cell 491

description:
Peak_counts_GM12878_experiment2.txt.gz
092-1-Ad1-17-Ad2-3_S395


title: GM12878 cell number 305

description:
GBC_090-25-Ad1-29-Ad2-37_S89
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 292

description:
GBC_090-13-Ad1-27-Ad2-39_S67
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 489

description:
Peak_counts_GM12878_experiment2.txt.gz
092-18-Ad1-19-Ad2-7_S423


title: GM12878 cell number 303

description:
GBC_090-23-Ad1-28-Ad2-44_S84
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 488

description:
Peak_counts_GM12878_experiment2.txt.gz
092-17-Ad1-19-Ad2-8_S424


title: GM12878 cell number 290

description:
GBC_090-11-Ad1-26-Ad2-44_S60
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 289

description:
GBC_090-10-Ad1-26-Ad2-45_S61
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 487

description:
Peak_counts_GM12878_experiment2.txt.gz
092-16-Ad1-19-Ad2-9_S425


title: GM12878 cell 486

description:
Peak_counts_GM12878_experiment2.txt.gz
092-15-Ad1-19-Ad2-1_S417


title: GM12878 cell 485

description:
Peak_counts_GM12878_experiment2.txt.gz
092-14-Ad1-19-Ad2-2_S418


title: GM12878 cell number 294

description:
GBC_090-15-Ad1-27-Ad2-37_S65
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 291

description:
GBC_090-12-Ad1-26-Ad2-43_S59
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 288

description:
GBC_069-9-Ad1-42-Ad2-85_S341
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 484

description:
Peak_counts_GM12878_experiment2.txt.gz
092-13-Ad1-19-Ad2-3_S419


title: GM12878 cell number 293

description:
GBC_090-14-Ad1-27-Ad2-38_S66
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 296

description:
GBC_090-17-Ad1-27-Ad2-44_S72
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 482

description:
Peak_counts_GM12878_experiment2.txt.gz
092-11-Ad1-18-Ad2-8_S412


title: GM12878 cell 481

description:
Peak_counts_GM12878_experiment2.txt.gz
092-10-Ad1-18-Ad2-9_S413


title: GM12878 cell 480

description:
Peak_counts_GM12878_experiment1.txt.gz
091-9-Ad1-34-Ad2-61_S117


title: GM12878 cell 478

description:
Peak_counts_GM12878_experiment1.txt.gz
091-95-Ad1-40-Ad2-71_S199


title: GM12878 cell number 286

description:
GBC_069-95-Ad1-48-Ad2-95_S423
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 281

description:
GBC_069-90-Ad1-47-Ad2-94_S410
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 479

description:
Peak_counts_GM12878_experiment1.txt.gz
091-96-Ad1-40-Ad2-70_S198


title: GM12878 cell number 282

description:
GBC_069-91-Ad1-48-Ad2-90_S418
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 283

description:
GBC_069-92-Ad1-48-Ad2-89_S417
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 476

description:
Peak_counts_GM12878_experiment1.txt.gz
091-93-Ad1-40-Ad2-64_S192


title: GM12878 cell number 279

description:
GBC_069-89-Ad1-47-Ad2-95_S411
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 287

description:
GBC_069-96-Ad1-48-Ad2-94_S422
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 483

description:
Peak_counts_GM12878_experiment2.txt.gz
092-12-Ad1-18-Ad2-7_S411


title: GM12878 cell 475

description:
Peak_counts_GM12878_experiment1.txt.gz
091-92-Ad1-40-Ad2-65_S193


title: GM12878 cell number 284

description:
GBC_069-93-Ad1-48-Ad2-88_S416
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell 477

description:
Peak_counts_GM12878_experiment1.txt.gz
091-94-Ad1-40-Ad2-72_S200


title: GM12878 cell number 278

description:
GBC_069-88-Ad1-47-Ad2-96_S412
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 280

description:
GBC_069-8-Ad1-42-Ad2-86_S342
GBC_counts_GM12878_experiment1.txt


title: GM12878 cell number 285

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GBC_001-45-Ad1-7-Ad2-14_S74
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title: GM12878 cell 235

description:
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069-49-p069-49-Ad1-41-Ad2-88_S300


title: GM12878 cell number 38

description:
GBC_001-44-Ad1-7-Ad2-13_S73
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 49

description:
GBC_001-54-Ad1-8-Ad2-23_S95
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 234

description:
Peak_counts_GM12878_experiment1.txt.gz
069-48-p069-48-Ad1-48-Ad2-93_S389


title: GM12878 cell number 36

description:
GBC_001-42-Ad1-6-Ad2-20_S68
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 37

description:
GBC_001-43-Ad1-7-Ad2-24_S84
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 47

description:
GBC_001-52-Ad1-8-Ad2-21_S93
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 232

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Peak_counts_GM12878_experiment1.txt.gz
069-46-p069-46-Ad1-48-Ad2-91_S387


title: GM12878 cell number 35

description:
GBC_001-41-Ad1-6-Ad2-19_S67
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 233

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title: GM12878 cell 231

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title: GM12878 cell 229

description:
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069-43-p069-43-Ad1-48-Ad2-85_S381


title: GM12878 cell number 43

description:
GBC_001-49-Ad1-8-Ad2-15_S87
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 33

description:
GBC_001-3-Ad1-8-Ad2-24_S96
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 32

description:
GBC_001-39-Ad1-6-Ad2-14_S62
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 230

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title: GM12878 cell 228

description:
Peak_counts_GM12878_experiment1.txt.gz
069-42-p069-42-Ad1-47-Ad2-93_S377


title: GM12878 cell number 31

description:
GBC_001-38-Ad1-6-Ad2-13_S61
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 34

description:
GBC_001-40-Ad1-6-Ad2-18_S66
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 226

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069-40-p069-40-Ad1-47-Ad2-91_S375


title: GM12878 cell number 30

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GBC_001-37-Ad1-6-Ad2-24_S72
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 29

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GBC_001-36-Ad1-5-Ad2-20_S56
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 225

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069-3-p069-3-Ad1-41-Ad2-85_S297


title: GM12878 cell number 28

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GBC_001-35-Ad1-5-Ad2-19_S55
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 227

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069-41-p069-41-Ad1-47-Ad2-92_S376


title: GM12878 cell 224

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Peak_counts_GM12878_experiment1.txt.gz
069-39-p069-39-Ad1-47-Ad2-87_S371


title: GM12878 cell number 26

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GBC_001-33-Ad1-5-Ad2-14_S50
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 25

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GBC_001-32-Ad1-5-Ad2-13_S49
GBC_counts_GM12878_experiment2.txt


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title: GM12878 cell 220

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Peak_counts_GM12878_experiment1.txt.gz
069-35-p069-35-Ad1-46-Ad2-92_S364


title: GM12878 cell number 24

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GBC_001-31-Ad1-5-Ad2-24_S60
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 22

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GBC_001-2-Ad1-8-Ad2-13_S85
GBC_counts_GM12878_experiment2.txt


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GBC_001-29-Ad1-4-Ad2-19_S43
GBC_counts_GM12878_experiment2.txt


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069-32-p069-32-Ad1-46-Ad2-86_S358


title: GM12878 cell number 20

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GBC_001-28-Ad1-4-Ad2-18_S42
GBC_counts_GM12878_experiment2.txt


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069-30-p069-30-Ad1-45-Ad2-93_S353


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GBC_001-24-Ad1-3-Ad2-18_S30
GBC_counts_GM12878_experiment2.txt


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GBC_001-27-Ad1-4-Ad2-14_S38
GBC_counts_GM12878_experiment2.txt


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069-29-p069-29-Ad1-45-Ad2-92_S352


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GBC_001-25-Ad1-4-Ad2-24_S48
GBC_counts_GM12878_experiment2.txt


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069-26-p069-26-Ad1-45-Ad2-86_S346


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GBC_001-22-Ad1-3-Ad2-20_S32
GBC_counts_GM12878_experiment2.txt


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GBC_001-23-Ad1-3-Ad2-19_S31
GBC_counts_GM12878_experiment2.txt


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069-27-p069-27-Ad1-45-Ad2-87_S347


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GBC_001-34-Ad1-5-Ad2-18_S54
GBC_counts_GM12878_experiment2.txt


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GBC_001-21-Ad1-3-Ad2-24_S36
GBC_counts_GM12878_experiment2.txt


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069-25-p069-25-Ad1-45-Ad2-85_S345


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069-36-p069-36-Ad1-46-Ad2-93_S365


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GBC_001-20-Ad1-3-Ad2-13_S25
GBC_counts_GM12878_experiment2.txt


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GBC_001-30-Ad1-4-Ad2-20_S44
GBC_counts_GM12878_experiment2.txt


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069-24-p069-24-Ad1-44-Ad2-91_S339


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GBC_001-1-Ad1-8-Ad2-14_S86
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069-23-p069-23-Ad1-44-Ad2-92_S340


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GBC_001-19-Ad1-3-Ad2-14_S26
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069-22-p069-22-Ad1-44-Ad2-93_S341


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GBC_001-18-Ad1-2-Ad2-18_S18
GBC_counts_GM12878_experiment2.txt


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GBC_001-17-Ad1-2-Ad2-19_S19
GBC_counts_GM12878_experiment2.txt


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GBC_001-26-Ad1-4-Ad2-13_S37
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069-20-p069-20-Ad1-44-Ad2-86_S334


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069-1-p069-1-Ad1-41-Ad2-87_S299


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GBC_001-16-Ad1-2-Ad2-20_S20
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069-19-p069-19-Ad1-44-Ad2-87_S335


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GBC_001-14-Ad1-2-Ad2-13_S13
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GBC_001-15-Ad1-2-Ad2-24_S24
GBC_counts_GM12878_experiment2.txt


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GBC_001-13-Ad1-2-Ad2-14_S14
GBC_counts_GM12878_experiment2.txt


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GBC_001-11-Ad1-1-Ad2-19_S7
GBC_counts_GM12878_experiment2.txt


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069-17-p069-17-Ad1-43-Ad2-92_S328


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069-15-p069-15-Ad1-43-Ad2-85_S321


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069-13-p069-13-Ad1-43-Ad2-87_S323


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069-14-p069-14-Ad1-43-Ad2-86_S322


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069-11-p069-11-Ad1-42-Ad2-92_S316


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069-12-p069-12-Ad1-42-Ad2-91_S315


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title: GM12878 cell 190

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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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title: GM12878 cell 41

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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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title: GM12878 cell 5

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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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title: GM12878 cell 105

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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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title: GM12878 cell 113

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Peak_counts_GM12878_experiment1.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment2.txt.gz
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Peak_counts_GM12878_experiment1.txt.gz
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