title: Keratinocyte cell number 182

description:
sgRNA_902-88-Ad1-15-Ad2-12_S348
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2758

status: Public on Dec 20 2018

type: SRA

city: Stanford

first: Paul

last: Khavari

state: CA

address: 269 Campus Drive, CCSR 2150

country: USA

institute: Stanford University

description:
279-73-Ad1-5-Ad2-30-TTGCTAAG-CTCCTTAC_S222
Peak_counts_GM12878_experiment2.txt.gz

library_source: genomic

data_processing:
For ATAC-seq data: adapter sequence trimming, mapping to Hg19 using Bowtie2, and PCR duplicate removal using Picard Tools was performed. ATAC-seq peaks were called with MACS2 and reads in each peak were counted for each sample.
Genome_build: hg19
Supplementary_files_format_and_content: ATAC-seq counts table file; adapter trimmed, reads aligned, pcr duplicates removed, and reads in ATAC-seq peaks counted

molecule: genomic DNA

organism: Homo sapiens

source_name: GM12878 cell line

growth_protocol: GM1878 cells were grown in RPMI 1640 with 10% FBS and 1% pen/strep. Human primary keratinocytes were cultured in 50/50 growth media and induced to differentiated for three or six days as previously described (Zarnegar et al., 2012)

extract_protocol: Single cells were captured using the C1 Single-Cell Auto Prep IFC microfluidic chips and assayed using the single-cell ATAC-seq protocol. In a 96-well plate, 6-7 µL from a total of 15ul of harvested libraries were amplified in 50 µL PCR for an additional 14 cycles (1.25 µM custom Nextera dual-index PCR primers in 1x NEBnext High-Fidelity PCR Master Mix) using the following PCR conditions: 72°C for 5min; 98°C for 30 s; and thermocycling at 98°C for 10 s, 72°C for 30 s, and 72°C for 1 min. Pooled libraries were purified and quantified using qPCR prior to sequencing.

tag: cell type

value: GM12878 cell line


title: GM12878 cell 2760

description:
279-75-Ad1-5-Ad2-28-AGTAGATT-CTCCTTAC_S220
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2752

description:
279-68-Ad1-4-Ad2-29-ATTGCCGG-TCTACTCT_S173
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2759

description:
279-74-Ad1-5-Ad2-29-ATTGCCGG-CTCCTTAC_S221
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2751

description:
279-67-Ad1-4-Ad2-28-AGTAGATT-TCTACTCT_S172
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2756

description:
279-71-Ad1-4-Ad2-35-GAGCACGT-TCTACTCT_S179
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2753

description:
279-69-Ad1-4-Ad2-30-TTGCTAAG-TCTACTCT_S174
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2750

description:
279-66-Ad1-3-Ad2-36-TTTCGTCA-AGAGGATA_S132
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2754

description:
279-6-Ad1-1-Ad2-31-ATAAGTTA-GCGATCTA_S31
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2757

description:
279-72-Ad1-4-Ad2-36-TTTCGTCA-TCTACTCT_S180
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2755

description:
279-70-Ad1-4-Ad2-34-AATGGTAG-TCTACTCT_S178
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 181

description:
sgRNA_902-87-Ad1-15-Ad2-4_S340
sgRNA_counts_Keratinocyte.txt.gz

library_source: transcriptomic

data_processing:
Library strategy: Perturb-ATAC-seq
For GBC mapping, any read not containing the expected 27 nt sequence prior to the GBC was discarded, allowing for a maximum Levenshtein distance of 2 to account for sequencing errors.  The subsequent 22 nt sequence was then compared to a list of GBC sequences, allowing for a maximum Levenshtein distance of 3 to be considered a match.  Note that the minimum Levenshtein distance between any two of our GBC sequences was 10. This generated a counts-per-cell table for each GBC sequence and cell. For sgRNA mapping, raw reads for sgRNA sequencing were matched to a list of sgRNA sequences used in the experiment. We required strict matching of the 20bp variable sequence along with 18bp of the standard sgRNA backbone. This resulted in the counts-per-cell table for each sgRNA.
Genome_build: hg19
Supplementary_files_format_and_content: Table of raw GBC or sgRNA counts per cell. Each row represents an individual cell and each column represents a distinct GBC or sgRNA considered in the experiment.

molecule: total RNA

source_name: Primary epidermal keratinocyte

extract_protocol: Single cells were captured using the C1 Single-Cell Auto Prep IFC microfluidic chips and assayed using the transcript-indexed single-cell ATAC-seq protocol. In a 96-well plate, 6.5 µL from a total of 15ul of harvested libraries were amplified in a 20 µL PCR for an additional 17 cycles (1uM each V1 primer, 1x NEBnext High-Fidelity PCR Master Mix) using the following PCR conditions: 98°C for 30 s, and cycling at 98°C for 10 s, 63°C for 30 s, and 72°C for 45 s. Then 2ul of the previous V1 PCR reaction were transferred to a nested V2 PCR reaction with V2 primers at the same concentration and using same cycling parameters as the V1 reaction, for 15 cycles. Next 2ul of the previous V2 PCR reaction were transferred to a cell barcoding V3 PCR reaction with V3 primers at the same concentration and using the same cycling parameters as the V2 reaction, for 15 cycles. Finally V3 reactions were pooled, purified, sized selected via PAGE, and quantified by qPCR prior to sequencing.

value: Primary epidermal keratinocyte


title: GM12878 cell 2748

description:
279-64-Ad1-3-Ad2-34-AATGGTAG-AGAGGATA_S130
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 180

description:
sgRNA_902-86-Ad1-15-Ad2-5_S341
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2747

description:
279-63-Ad1-3-Ad2-30-TTGCTAAG-AGAGGATA_S126
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2746

description:
279-62-Ad1-3-Ad2-29-ATTGCCGG-AGAGGATA_S125
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2745

description:
279-61-Ad1-3-Ad2-28-AGTAGATT-AGAGGATA_S124
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 177

description:
sgRNA_902-83-Ad1-14-Ad2-11_S323
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 176

description:
sgRNA_902-82-Ad1-14-Ad2-12_S324
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2749

description:
279-65-Ad1-3-Ad2-35-GAGCACGT-AGAGGATA_S131
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2744

description:
279-60-Ad1-2-Ad2-36-TTTCGTCA-ATAGAGAG_S84
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2743

description:
279-5-Ad1-1-Ad2-32-ATCACTCG-GCGATCTA_S32
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 175

description:
sgRNA_902-81-Ad1-14-Ad2-4_S316
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 174

description:
sgRNA_902-80-Ad1-14-Ad2-5_S317
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 183

description:
sgRNA_902-89-Ad1-15-Ad2-11_S347
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2741

description:
279-58-Ad1-2-Ad2-34-AATGGTAG-ATAGAGAG_S82
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 173

description:
sgRNA_902-7-Ad1-10-Ad2-3_S219
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2742

description:
279-59-Ad1-2-Ad2-35-GAGCACGT-ATAGAGAG_S83
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 178

description:
sgRNA_902-84-Ad1-14-Ad2-10_S322
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 171

description:
sgRNA_902-78-Ad1-13-Ad2-10_S298
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 166

description:
sgRNA_902-73-Ad1-13-Ad2-6_S294
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 163

description:
sgRNA_902-70-Ad1-12-Ad2-10_S274
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 167

description:
sgRNA_902-74-Ad1-13-Ad2-5_S293
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 162

description:
sgRNA_902-6-Ad1-9-Ad2-7_S199
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 168

description:
sgRNA_902-75-Ad1-13-Ad2-4_S292
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 164

description:
sgRNA_902-71-Ad1-12-Ad2-11_S275
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 179

description:
sgRNA_902-85-Ad1-15-Ad2-6_S342
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 170

description:
sgRNA_902-77-Ad1-13-Ad2-11_S299
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2738

description:
279-55-Ad1-2-Ad2-28-AGTAGATT-ATAGAGAG_S76
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 165

description:
sgRNA_902-72-Ad1-12-Ad2-12_S276
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 169

description:
sgRNA_902-76-Ad1-13-Ad2-12_S300
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 160

description:
sgRNA_902-68-Ad1-12-Ad2-5_S269
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2737

description:
279-54-Ad1-1-Ad2-36-TTTCGTCA-GCGATCTA_S36
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2736

description:
279-53-Ad1-1-Ad2-35-GAGCACGT-GCGATCTA_S35
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2733

description:
279-50-Ad1-1-Ad2-29-ATTGCCGG-GCGATCTA_S29
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2732

description:
279-4-Ad1-1-Ad2-33-GTTAACAG-GCGATCTA_S33
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2735

description:
279-52-Ad1-1-Ad2-34-AATGGTAG-GCGATCTA_S34
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2740

description:
279-57-Ad1-2-Ad2-30-TTGCTAAG-ATAGAGAG_S78
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2731

description:
279-49-Ad1-1-Ad2-28-AGTAGATT-GCGATCTA_S28
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 161

description:
sgRNA_902-69-Ad1-12-Ad2-6_S270
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2734

description:
279-51-Ad1-1-Ad2-30-TTGCTAAG-GCGATCTA_S30
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 172

description:
sgRNA_902-79-Ad1-14-Ad2-6_S318
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2729

description:
279-47-Ad1-8-Ad2-32-ATCACTCG-AGGCTTAG_S368
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 159

description:
sgRNA_902-67-Ad1-12-Ad2-4_S268
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2739

description:
279-56-Ad1-2-Ad2-29-ATTGCCGG-ATAGAGAG_S77
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2730

description:
279-48-Ad1-8-Ad2-33-GTTAACAG-AGGCTTAG_S369
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2728

description:
279-46-Ad1-8-Ad2-31-ATAAGTTA-AGGCTTAG_S367
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2726

description:
279-44-Ad1-8-Ad2-26-TACTTGAA-AGGCTTAG_S362
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 158

description:
sgRNA_902-66-Ad1-11-Ad2-12_S252
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2725

description:
279-43-Ad1-8-Ad2-25-ACAAAGTG-AGGCTTAG_S361
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 156

description:
sgRNA_902-64-Ad1-11-Ad2-10_S250
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2724

description:
279-42-Ad1-7-Ad2-33-GTTAACAG-TACTCCTT_S321
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2723

description:
279-41-Ad1-7-Ad2-32-ATCACTCG-TACTCCTT_S320
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 155

description:
sgRNA_902-63-Ad1-11-Ad2-6_S246
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2727

description:
279-45-Ad1-8-Ad2-27-GTGATAGC-AGGCTTAG_S363
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2721

description:
279-3-Ad1-1-Ad2-25-ACAAAGTG-GCGATCTA_S25
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2722

description:
279-40-Ad1-7-Ad2-31-ATAAGTTA-TACTCCTT_S319
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 152

description:
sgRNA_902-60-Ad1-10-Ad2-12_S228
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2720

description:
279-39-Ad1-7-Ad2-27-GTGATAGC-TACTCCTT_S315
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 154

description:
sgRNA_902-62-Ad1-11-Ad2-5_S245
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 157

description:
sgRNA_902-65-Ad1-11-Ad2-11_S251
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 150

description:
sgRNA_902-59-Ad1-10-Ad2-11_S227
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 151

description:
sgRNA_902-5-Ad1-9-Ad2-8_S200
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 147

description:
sgRNA_902-56-Ad1-10-Ad2-5_S221
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 146

description:
sgRNA_902-55-Ad1-10-Ad2-4_S220
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2719

description:
279-38-Ad1-7-Ad2-26-TACTTGAA-TACTCCTT_S314
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2716

description:
279-35-Ad1-6-Ad2-32-ATCACTCG-TATGCAGT_S272
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2717

description:
279-36-Ad1-6-Ad2-33-GTTAACAG-TATGCAGT_S273
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 153

description:
sgRNA_902-61-Ad1-11-Ad2-4_S244
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 148

description:
sgRNA_902-57-Ad1-10-Ad2-6_S222
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2714

description:
279-33-Ad1-6-Ad2-27-GTGATAGC-TATGCAGT_S267
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2713

description:
279-32-Ad1-6-Ad2-26-TACTTGAA-TATGCAGT_S266
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 145

description:
sgRNA_902-54-Ad1-9-Ad2-12_S204
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2712

description:
279-31-Ad1-6-Ad2-25-ACAAAGTG-TATGCAGT_S265
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2711

description:
279-30-Ad1-5-Ad2-33-GTTAACAG-CTCCTTAC_S225
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 144

description:
sgRNA_902-53-Ad1-9-Ad2-11_S203
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2715

description:
279-34-Ad1-6-Ad2-31-ATAAGTTA-TATGCAGT_S271
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 142

description:
sgRNA_902-51-Ad1-9-Ad2-6_S198
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2718

description:
279-37-Ad1-7-Ad2-25-ACAAAGTG-TACTCCTT_S313
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2709

description:
279-29-Ad1-5-Ad2-32-ATCACTCG-CTCCTTAC_S224
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2708

description:
279-28-Ad1-5-Ad2-31-ATAAGTTA-CTCCTTAC_S223
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 149

description:
sgRNA_902-58-Ad1-10-Ad2-10_S226
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2705

description:
279-25-Ad1-5-Ad2-25-ACAAAGTG-CTCCTTAC_S217
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 140

description:
sgRNA_902-4-Ad1-9-Ad2-9_S201
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 137

description:
sgRNA_902-47-Ad1-16-Ad2-8_S368
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2707

description:
279-27-Ad1-5-Ad2-27-GTGATAGC-CTCCTTAC_S219
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 139

description:
sgRNA_902-49-Ad1-9-Ad2-4_S196
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 138

description:
sgRNA_902-48-Ad1-16-Ad2-9_S369
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2706

description:
279-26-Ad1-5-Ad2-26-TACTTGAA-CTCCTTAC_S218
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2710

description:
279-2-Ad1-1-Ad2-26-TACTTGAA-GCGATCTA_S26
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 135

description:
sgRNA_902-45-Ad1-16-Ad2-3_S363
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 141

description:
sgRNA_902-50-Ad1-9-Ad2-5_S197
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2704

description:
279-24-Ad1-4-Ad2-31-ATAAGTTA-TCTACTCT_S175
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 134

description:
sgRNA_902-44-Ad1-16-Ad2-2_S362
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2702

description:
279-22-Ad1-4-Ad2-33-GTTAACAG-TCTACTCT_S177
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2701

description:
279-21-Ad1-4-Ad2-25-ACAAAGTG-TCTACTCT_S169
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 133

description:
sgRNA_902-43-Ad1-16-Ad2-1_S361
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 136

description:
sgRNA_902-46-Ad1-16-Ad2-7_S367
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2700

description:
279-20-Ad1-4-Ad2-26-TACTTGAA-TCTACTCT_S170
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 131

description:
sgRNA_902-41-Ad1-15-Ad2-8_S344
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2699

description:
279-1-Ad1-1-Ad2-27-GTGATAGC-GCGATCTA_S27
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 143

description:
sgRNA_902-52-Ad1-9-Ad2-10_S202
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 130

description:
sgRNA_902-40-Ad1-15-Ad2-7_S343
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2698

description:
279-19-Ad1-4-Ad2-27-GTGATAGC-TCTACTCT_S171
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2703

description:
279-23-Ad1-4-Ad2-32-ATCACTCG-TCTACTCT_S176
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2697

description:
279-18-Ad1-3-Ad2-31-ATAAGTTA-AGAGGATA_S127
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2696

description:
279-17-Ad1-3-Ad2-32-ATCACTCG-AGAGGATA_S128
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 127

description:
sgRNA_902-38-Ad1-15-Ad2-2_S338
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2695

description:
279-16-Ad1-3-Ad2-33-GTTAACAG-AGAGGATA_S129
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 126

description:
sgRNA_902-37-Ad1-15-Ad2-1_S337
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 128

description:
sgRNA_902-39-Ad1-15-Ad2-3_S339
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2693

description:
279-14-Ad1-3-Ad2-26-TACTTGAA-AGAGGATA_S122
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2694

description:
279-15-Ad1-3-Ad2-25-ACAAAGTG-AGAGGATA_S121
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 129

description:
sgRNA_902-3-Ad1-9-Ad2-1_S193
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 122

description:
sgRNA_902-33-Ad1-14-Ad2-3_S315
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 123

description:
sgRNA_902-34-Ad1-14-Ad2-7_S319
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2691

description:
279-12-Ad1-2-Ad2-31-ATAAGTTA-ATAGAGAG_S79
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 125

description:
sgRNA_902-36-Ad1-14-Ad2-9_S321
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2689

description:
279-10-Ad1-2-Ad2-33-GTTAACAG-ATAGAGAG_S81
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 124

description:
sgRNA_902-35-Ad1-14-Ad2-8_S320
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 132

description:
sgRNA_902-42-Ad1-15-Ad2-9_S345
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2688

description:
278-9-Ad1-2-Ad2-13-TGGATCTG-ATAGAGAG_S61
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 120

description:
sgRNA_902-31-Ad1-14-Ad2-1_S313
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 119

description:
sgRNA_902-30-Ad1-13-Ad2-9_S297
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2685

description:
278-94-Ad1-8-Ad2-24-GGCGTCGA-AGGCTTAG_S360
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 118

description:
sgRNA_902-2-Ad1-9-Ad2-2_S194
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2687

description:
278-96-Ad1-8-Ad2-22-TTCCATAT-AGGCTTAG_S358
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2686

description:
278-95-Ad1-8-Ad2-23-AATTCGTT-AGGCTTAG_S359
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2684

description:
278-93-Ad1-8-Ad2-16-AGGTTGGG-AGGCTTAG_S352
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 117

description:
sgRNA_902-29-Ad1-13-Ad2-8_S296
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 116

description:
sgRNA_902-28-Ad1-13-Ad2-7_S295
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2692

description:
279-13-Ad1-3-Ad2-27-GTGATAGC-AGAGGATA_S123
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 115

description:
sgRNA_902-27-Ad1-13-Ad2-3_S291
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2690

description:
279-11-Ad1-2-Ad2-32-ATCACTCG-ATAGAGAG_S80
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2683

description:
278-92-Ad1-8-Ad2-17-GTGTGGTG-AGGCTTAG_S353
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 121

description:
sgRNA_902-32-Ad1-14-Ad2-2_S314
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2682

description:
278-91-Ad1-8-Ad2-18-TGGGTTTC-AGGCTTAG_S354
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 112

description:
sgRNA_902-24-Ad1-12-Ad2-7_S271
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 114

description:
sgRNA_902-26-Ad1-13-Ad2-2_S290
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 111

description:
sgRNA_902-23-Ad1-12-Ad2-8_S272
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 109

description:
sgRNA_902-21-Ad1-12-Ad2-1_S265
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2678

description:
278-88-Ad1-7-Ad2-24-GGCGTCGA-TACTCCTT_S312
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2681

description:
278-90-Ad1-7-Ad2-22-TTCCATAT-TACTCCTT_S310
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 110

description:
sgRNA_902-22-Ad1-12-Ad2-9_S273
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2679

description:
278-89-Ad1-7-Ad2-23-AATTCGTT-TACTCCTT_S311
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2676

description:
278-86-Ad1-7-Ad2-17-GTGTGGTG-TACTCCTT_S305
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 107

description:
sgRNA_902-1-Ad1-9-Ad2-3_S195
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2675

description:
278-85-Ad1-7-Ad2-18-TGGGTTTC-TACTCCTT_S306
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2674

description:
278-84-Ad1-6-Ad2-22-TTCCATAT-TATGCAGT_S262
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2673

description:
278-83-Ad1-6-Ad2-23-AATTCGTT-TATGCAGT_S263
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 108

description:
sgRNA_902-20-Ad1-12-Ad2-2_S266
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2672

description:
278-82-Ad1-6-Ad2-24-GGCGTCGA-TATGCAGT_S264
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 105

description:
sgRNA_902-18-Ad1-11-Ad2-7_S247
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 103

description:
sgRNA_902-16-Ad1-11-Ad2-9_S249
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2670

description:
278-80-Ad1-6-Ad2-17-GTGTGGTG-TATGCAGT_S257
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 113

description:
sgRNA_902-25-Ad1-13-Ad2-1_S289
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2680

description:
278-8-Ad1-2-Ad2-14-CCGTTTGT-ATAGAGAG_S62
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 101

description:
sgRNA_902-14-Ad1-11-Ad2-2_S242
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2668

description:
278-79-Ad1-6-Ad2-18-TGGGTTTC-TATGCAGT_S258
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2669

description:
278-7-Ad1-2-Ad2-15-TGCTGGGT-ATAGAGAG_S63
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2677

description:
278-87-Ad1-7-Ad2-16-AGGTTGGG-TACTCCTT_S304
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 102

description:
sgRNA_902-15-Ad1-11-Ad2-1_S241
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 99

description:
sgRNA_902-12-Ad1-10-Ad2-7_S223
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2667

description:
278-78-Ad1-5-Ad2-22-TTCCATAT-CTCCTTAC_S214
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2665

description:
278-76-Ad1-5-Ad2-24-GGCGTCGA-CTCCTTAC_S216
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2666

description:
278-77-Ad1-5-Ad2-23-AATTCGTT-CTCCTTAC_S215
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 100

description:
sgRNA_902-13-Ad1-11-Ad2-3_S243
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 106

description:
sgRNA_902-19-Ad1-12-Ad2-3_S267
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 95

description:
sgRNA_901-96-Ad1-8-Ad2-10_S178
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2662

description:
278-73-Ad1-5-Ad2-18-TGGGTTTC-CTCCTTAC_S210
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2663

description:
278-74-Ad1-5-Ad2-17-GTGTGGTG-CTCCTTAC_S209
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 96

description:
sgRNA_901-9-Ad1-2-Ad2-1_S25
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2661

description:
278-72-Ad1-4-Ad2-24-GGCGTCGA-TCTACTCT_S168
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 98

description:
sgRNA_902-11-Ad1-10-Ad2-8_S224
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2664

description:
278-75-Ad1-5-Ad2-16-AGGTTGGG-CTCCTTAC_S208
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2660

description:
278-71-Ad1-4-Ad2-23-AATTCGTT-TCTACTCT_S167
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2659

description:
278-70-Ad1-4-Ad2-22-TTCCATAT-TCTACTCT_S166
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 92

description:
sgRNA_901-93-Ad1-8-Ad2-4_S172
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 93

description:
sgRNA_901-94-Ad1-8-Ad2-12_S180
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 94

description:
sgRNA_901-95-Ad1-8-Ad2-11_S179
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2671

description:
278-81-Ad1-6-Ad2-16-AGGTTGGG-TATGCAGT_S256
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 91

description:
sgRNA_901-92-Ad1-8-Ad2-5_S173
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 89

description:
sgRNA_901-90-Ad1-7-Ad2-10_S154
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 90

description:
sgRNA_901-91-Ad1-8-Ad2-6_S174
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2656

description:
278-68-Ad1-4-Ad2-17-GTGTGGTG-TCTACTCT_S161
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2657

description:
278-69-Ad1-4-Ad2-18-TGGGTTTC-TCTACTCT_S162
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 97

description:
sgRNA_902-10-Ad1-10-Ad2-9_S225
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 88

description:
sgRNA_901-8-Ad1-2-Ad2-2_S26
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 87

description:
sgRNA_901-89-Ad1-7-Ad2-11_S155
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2655

description:
278-67-Ad1-4-Ad2-16-AGGTTGGG-TCTACTCT_S160
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 86

description:
sgRNA_901-88-Ad1-7-Ad2-12_S156
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2653

description:
278-65-Ad1-3-Ad2-23-AATTCGTT-AGAGGATA_S119
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2654

description:
278-66-Ad1-3-Ad2-24-GGCGTCGA-AGAGGATA_S120
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 85

description:
sgRNA_901-87-Ad1-7-Ad2-4_S148
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2652

description:
278-64-Ad1-3-Ad2-22-TTCCATAT-AGAGGATA_S118
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 83

description:
sgRNA_901-85-Ad1-7-Ad2-6_S150
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 84

description:
sgRNA_901-86-Ad1-7-Ad2-5_S149
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2648

description:
278-60-Ad1-2-Ad2-24-GGCGTCGA-ATAGAGAG_S72
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2650

description:
278-62-Ad1-3-Ad2-17-GTGTGGTG-AGAGGATA_S113
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2651

description:
278-63-Ad1-3-Ad2-18-TGGGTTTC-AGAGGATA_S114
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2647

description:
278-5-Ad1-1-Ad2-20-TTGACCCT-GCGATCTA_S20
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 82

description:
sgRNA_901-84-Ad1-6-Ad2-10_S130
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 79

description:
sgRNA_901-81-Ad1-6-Ad2-4_S124
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 78

description:
sgRNA_901-80-Ad1-6-Ad2-5_S125
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2646

description:
278-59-Ad1-2-Ad2-23-AATTCGTT-ATAGAGAG_S71
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2645

description:
278-58-Ad1-2-Ad2-22-TTCCATAT-ATAGAGAG_S70
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 77

description:
sgRNA_901-7-Ad1-2-Ad2-3_S27
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2658

description:
278-6-Ad1-1-Ad2-19-TGGTCACA-GCGATCTA_S19
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 76

description:
sgRNA_901-79-Ad1-6-Ad2-6_S126
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2642

description:
278-55-Ad1-2-Ad2-16-AGGTTGGG-ATAGAGAG_S64
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2644

description:
278-57-Ad1-2-Ad2-18-TGGGTTTC-ATAGAGAG_S66
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 74

description:
sgRNA_901-77-Ad1-5-Ad2-11_S107
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 75

description:
sgRNA_901-78-Ad1-5-Ad2-10_S106
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2643

description:
278-56-Ad1-2-Ad2-17-GTGTGGTG-ATAGAGAG_S65
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 81

description:
sgRNA_901-83-Ad1-6-Ad2-11_S131
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2649

description:
278-61-Ad1-3-Ad2-16-AGGTTGGG-AGAGGATA_S112
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 73

description:
sgRNA_901-76-Ad1-5-Ad2-12_S108
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2640

description:
278-53-Ad1-1-Ad2-23-AATTCGTT-GCGATCTA_S23
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2638

description:
278-51-Ad1-1-Ad2-18-TGGGTTTC-GCGATCTA_S18
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 72

description:
sgRNA_901-75-Ad1-5-Ad2-4_S100
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 70

description:
sgRNA_901-73-Ad1-5-Ad2-6_S102
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2641

description:
278-54-Ad1-1-Ad2-24-GGCGTCGA-GCGATCTA_S24
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 69

description:
sgRNA_901-72-Ad1-4-Ad2-12_S84
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 80

description:
sgRNA_901-82-Ad1-6-Ad2-12_S132
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 71

description:
sgRNA_901-74-Ad1-5-Ad2-5_S101
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2637

description:
278-50-Ad1-1-Ad2-17-GTGTGGTG-GCGATCTA_S17
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2639

description:
278-52-Ad1-1-Ad2-22-TTCCATAT-GCGATCTA_S22
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 68

description:
sgRNA_901-71-Ad1-4-Ad2-11_S83
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 66

description:
sgRNA_901-6-Ad1-1-Ad2-7_S7
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 65

description:
sgRNA_901-69-Ad1-4-Ad2-6_S78
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 104

description:
sgRNA_902-17-Ad1-11-Ad2-8_S248
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2633

description:
278-47-Ad1-8-Ad2-20-TTGACCCT-AGGCTTAG_S356
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2635

description:
278-49-Ad1-1-Ad2-16-AGGTTGGG-GCGATCTA_S16
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2634

description:
278-48-Ad1-8-Ad2-21-CGCGGACA-AGGCTTAG_S357
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2632

description:
278-46-Ad1-8-Ad2-19-TGGTCACA-AGGCTTAG_S355
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2636

description:
278-4-Ad1-1-Ad2-21-CGCGGACA-GCGATCTA_S21
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 64

description:
sgRNA_901-68-Ad1-4-Ad2-5_S77
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2631

description:
278-45-Ad1-8-Ad2-15-TGCTGGGT-AGGCTTAG_S351
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 62

description:
sgRNA_901-66-Ad1-3-Ad2-12_S60
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2630

description:
278-44-Ad1-8-Ad2-14-CCGTTTGT-AGGCTTAG_S350
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 63

description:
sgRNA_901-67-Ad1-4-Ad2-4_S76
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2629

description:
278-43-Ad1-8-Ad2-13-TGGATCTG-AGGCTTAG_S349
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2628

description:
278-42-Ad1-7-Ad2-21-CGCGGACA-TACTCCTT_S309
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2627

description:
278-41-Ad1-7-Ad2-20-TTGACCCT-TACTCCTT_S308
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 60

description:
sgRNA_901-64-Ad1-3-Ad2-10_S58
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2626

description:
278-40-Ad1-7-Ad2-19-TGGTCACA-TACTCCTT_S307
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 59

description:
sgRNA_901-63-Ad1-3-Ad2-6_S54
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 57

description:
sgRNA_901-61-Ad1-3-Ad2-4_S52
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 58

description:
sgRNA_901-62-Ad1-3-Ad2-5_S53
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 67

description:
sgRNA_901-70-Ad1-4-Ad2-10_S82
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 56

description:
sgRNA_901-60-Ad1-2-Ad2-12_S36
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 55

description:
sgRNA_901-5-Ad1-1-Ad2-8_S8
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2623

description:
278-38-Ad1-7-Ad2-14-CCGTTTGT-TACTCCTT_S302
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2622

description:
278-37-Ad1-7-Ad2-13-TGGATCTG-TACTCCTT_S301
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2624

description:
278-39-Ad1-7-Ad2-15-TGCTGGGT-TACTCCTT_S303
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 61

description:
sgRNA_901-65-Ad1-3-Ad2-11_S59
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2621

description:
278-36-Ad1-6-Ad2-21-CGCGGACA-TATGCAGT_S261
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 54

description:
sgRNA_901-59-Ad1-2-Ad2-11_S35
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 53

description:
sgRNA_901-58-Ad1-2-Ad2-10_S34
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2620

description:
278-35-Ad1-6-Ad2-20-TTGACCCT-TATGCAGT_S260
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2619

description:
278-34-Ad1-6-Ad2-19-TGGTCACA-TATGCAGT_S259
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2618

description:
278-33-Ad1-6-Ad2-15-TGCTGGGT-TATGCAGT_S255
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2617

description:
278-32-Ad1-6-Ad2-14-CCGTTTGT-TATGCAGT_S254
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2616

description:
278-31-Ad1-6-Ad2-13-TGGATCTG-TATGCAGT_S253
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 47

description:
sgRNA_901-52-Ad1-1-Ad2-10_S10
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 48

description:
sgRNA_901-53-Ad1-1-Ad2-11_S11
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2615

description:
278-30-Ad1-5-Ad2-21-CGCGGACA-CTCCTTAC_S213
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 49

description:
sgRNA_901-54-Ad1-1-Ad2-12_S12
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 46

description:
sgRNA_901-51-Ad1-1-Ad2-6_S6
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2614

description:
278-2-Ad1-1-Ad2-14-CCGTTTGT-GCGATCTA_S14
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2611

description:
278-27-Ad1-5-Ad2-15-TGCTGGGT-CTCCTTAC_S207
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 42

description:
sgRNA_901-48-Ad1-8-Ad2-9_S177
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2613

description:
278-29-Ad1-5-Ad2-20-TTGACCCT-CTCCTTAC_S212
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 45

description:
sgRNA_901-50-Ad1-1-Ad2-5_S5
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 40

description:
sgRNA_901-46-Ad1-8-Ad2-7_S175
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 51

description:
sgRNA_901-56-Ad1-2-Ad2-5_S29
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2610

description:
278-26-Ad1-5-Ad2-14-CCGTTTGT-CTCCTTAC_S206
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 52

description:
sgRNA_901-57-Ad1-2-Ad2-6_S30
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 50

description:
sgRNA_901-55-Ad1-2-Ad2-4_S28
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 43

description:
sgRNA_901-49-Ad1-1-Ad2-4_S4
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2608

description:
278-24-Ad1-4-Ad2-19-TGGTCACA-TCTACTCT_S163
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 38

description:
sgRNA_901-44-Ad1-8-Ad2-2_S170
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2607

description:
278-23-Ad1-4-Ad2-20-TTGACCCT-TCTACTCT_S164
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2605

description:
278-21-Ad1-4-Ad2-13-TGGATCTG-TCTACTCT_S157
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 44

description:
sgRNA_901-4-Ad1-1-Ad2-9_S9
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2625

description:
278-3-Ad1-1-Ad2-13-TGGATCTG-GCGATCTA_S13
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2606

description:
278-22-Ad1-4-Ad2-21-CGCGGACA-TCTACTCT_S165
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 37

description:
sgRNA_901-43-Ad1-8-Ad2-1_S169
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2604

description:
278-20-Ad1-4-Ad2-14-CCGTTTGT-TCTACTCT_S158
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 36

description:
sgRNA_901-42-Ad1-7-Ad2-9_S153
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2603

description:
278-1-Ad1-1-Ad2-15-TGCTGGGT-GCGATCTA_S15
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2602

description:
278-19-Ad1-4-Ad2-15-TGCTGGGT-TCTACTCT_S159
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 34

description:
sgRNA_901-40-Ad1-7-Ad2-7_S151
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 33

description:
sgRNA_901-3-Ad1-1-Ad2-1_S1
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2601

description:
278-18-Ad1-3-Ad2-19-TGGTCACA-AGAGGATA_S115
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 41

description:
sgRNA_901-47-Ad1-8-Ad2-8_S176
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 35

description:
sgRNA_901-41-Ad1-7-Ad2-8_S152
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2600

description:
278-17-Ad1-3-Ad2-20-TTGACCCT-AGAGGATA_S116
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 32

description:
sgRNA_901-39-Ad1-7-Ad2-3_S147
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 31

description:
sgRNA_901-38-Ad1-7-Ad2-2_S146
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2599

description:
278-16-Ad1-3-Ad2-21-CGCGGACA-AGAGGATA_S117
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 39

description:
sgRNA_901-45-Ad1-8-Ad2-3_S171
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 29

description:
sgRNA_901-36-Ad1-6-Ad2-9_S129
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 30

description:
sgRNA_901-37-Ad1-7-Ad2-1_S145
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2598

description:
278-15-Ad1-3-Ad2-13-TGGATCTG-AGAGGATA_S109
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2597

description:
278-14-Ad1-3-Ad2-14-CCGTTTGT-AGAGGATA_S110
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2596

description:
278-13-Ad1-3-Ad2-15-TGCTGGGT-AGAGGATA_S111
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 27

description:
sgRNA_901-34-Ad1-6-Ad2-7_S127
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2595

description:
278-12-Ad1-2-Ad2-19-TGGTCACA-ATAGAGAG_S67
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 28

description:
sgRNA_901-35-Ad1-6-Ad2-8_S128
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2594

description:
278-11-Ad1-2-Ad2-20-TTGACCCT-ATAGAGAG_S68
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2592

description:
277-9-Ad1-2-Ad2-1-TAAGGCGA-ATAGAGAG_S49
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2593

description:
278-10-Ad1-2-Ad2-21-CGCGGACA-ATAGAGAG_S69
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 25

description:
sgRNA_901-32-Ad1-6-Ad2-2_S122
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 24

description:
sgRNA_901-31-Ad1-6-Ad2-1_S121
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 23

description:
sgRNA_901-30-Ad1-5-Ad2-9_S105
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 22

description:
sgRNA_901-2-Ad1-1-Ad2-2_S2
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2590

description:
277-95-Ad1-8-Ad2-11-AAGAGGCA-AGGCTTAG_S347
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2591

description:
277-96-Ad1-8-Ad2-10-CGAGGCTG-AGGCTTAG_S346
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2589

description:
277-94-Ad1-8-Ad2-12-GTAGAGGA-AGGCTTAG_S348
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 21

description:
sgRNA_901-29-Ad1-5-Ad2-8_S104
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2588

description:
277-93-Ad1-8-Ad2-4-TCCTGAGC-AGGCTTAG_S340
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 20

description:
sgRNA_901-28-Ad1-5-Ad2-7_S103
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2587

description:
277-92-Ad1-8-Ad2-5-GGACTCCT-AGGCTTAG_S341
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2586

description:
277-91-Ad1-8-Ad2-6-TAGGCATG-AGGCTTAG_S342
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 18

description:
sgRNA_901-26-Ad1-5-Ad2-2_S98
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 17

description:
sgRNA_901-25-Ad1-5-Ad2-1_S97
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2585

description:
277-90-Ad1-7-Ad2-10-CGAGGCTG-TACTCCTT_S298
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 16

description:
sgRNA_901-24-Ad1-4-Ad2-7_S79
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2583

description:
277-89-Ad1-7-Ad2-11-AAGAGGCA-TACTCCTT_S299
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 14

description:
sgRNA_901-22-Ad1-4-Ad2-9_S81
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 15

description:
sgRNA_901-23-Ad1-4-Ad2-8_S80
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2582

description:
277-88-Ad1-7-Ad2-12-GTAGAGGA-TACTCCTT_S300
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 13

description:
sgRNA_901-21-Ad1-4-Ad2-1_S73
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2580

description:
277-86-Ad1-7-Ad2-5-GGACTCCT-TACTCCTT_S293
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2584

description:
277-8-Ad1-2-Ad2-2-CGTACTAG-ATAGAGAG_S50
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 26

description:
sgRNA_901-33-Ad1-6-Ad2-3_S123
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 12

description:
sgRNA_901-20-Ad1-4-Ad2-2_S74
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2581

description:
277-87-Ad1-7-Ad2-4-TCCTGAGC-TACTCCTT_S292
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 11

description:
sgRNA_901-1-Ad1-1-Ad2-3_S3
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2579

description:
277-85-Ad1-7-Ad2-6-TAGGCATG-TACTCCTT_S294
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2612

description:
278-28-Ad1-5-Ad2-19-TGGTCACA-CTCCTTAC_S211
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 10

description:
sgRNA_901-19-Ad1-4-Ad2-3_S75
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 9

description:
sgRNA_901-18-Ad1-3-Ad2-7_S55
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2576

description:
277-82-Ad1-6-Ad2-12-GTAGAGGA-TATGCAGT_S252
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2577

description:
277-83-Ad1-6-Ad2-11-AAGAGGCA-TATGCAGT_S251
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 8

description:
sgRNA_901-17-Ad1-3-Ad2-8_S56
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2578

description:
277-84-Ad1-6-Ad2-10-CGAGGCTG-TATGCAGT_S250
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 19

description:
sgRNA_901-27-Ad1-5-Ad2-3_S99
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 7

description:
sgRNA_901-16-Ad1-3-Ad2-9_S57
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2575

description:
277-81-Ad1-6-Ad2-4-TCCTGAGC-TATGCAGT_S244
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2574

description:
277-80-Ad1-6-Ad2-5-GGACTCCT-TATGCAGT_S245
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 6

description:
sgRNA_901-15-Ad1-3-Ad2-1_S49
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2572

description:
277-79-Ad1-6-Ad2-6-TAGGCATG-TATGCAGT_S246
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2573

description:
277-7-Ad1-2-Ad2-3-AGGCAGAA-ATAGAGAG_S51
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 5

description:
sgRNA_901-14-Ad1-3-Ad2-2_S50
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 4

description:
sgRNA_901-13-Ad1-3-Ad2-3_S51
sgRNA_counts_Keratinocyte.txt.gz


title: Keratinocyte cell number 3

description:
sgRNA_901-12-Ad1-2-Ad2-7_S31
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2570

description:
277-77-Ad1-5-Ad2-11-AAGAGGCA-CTCCTTAC_S203
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 2

description:
sgRNA_901-11-Ad1-2-Ad2-8_S32
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell 2571

description:
277-78-Ad1-5-Ad2-10-CGAGGCTG-CTCCTTAC_S202
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2496

description:
GBC_272-9-Ad1-34-Ad2-49_S409
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2569

description:
277-76-Ad1-5-Ad2-12-GTAGAGGA-CTCCTTAC_S204
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2567

description:
277-74-Ad1-5-Ad2-5-GGACTCCT-CTCCTTAC_S197
Peak_counts_GM12878_experiment2.txt.gz


title: Keratinocyte cell number 1

description:
sgRNA_901-10-Ad1-2-Ad2-9_S33
sgRNA_counts_Keratinocyte.txt.gz


title: GM12878 cell number 2495

description:
GBC_272-96-Ad1-40-Ad2-58_S562
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2494

description:
GBC_272-95-Ad1-40-Ad2-59_S563
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2568

description:
277-75-Ad1-5-Ad2-4-TCCTGAGC-CTCCTTAC_S196
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2493

description:
GBC_272-94-Ad1-40-Ad2-60_S564
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2565

description:
277-72-Ad1-4-Ad2-12-GTAGAGGA-TCTACTCT_S156
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2491

description:
GBC_272-92-Ad1-40-Ad2-53_S557
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2563

description:
277-70-Ad1-4-Ad2-10-CGAGGCTG-TCTACTCT_S154
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2492

description:
GBC_272-93-Ad1-40-Ad2-52_S556
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2490

description:
GBC_272-91-Ad1-40-Ad2-54_S558
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2489

description:
GBC_272-90-Ad1-39-Ad2-58_S538
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2561

description:
277-69-Ad1-4-Ad2-6-TAGGCATG-TCTACTCT_S150
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2560

description:
277-68-Ad1-4-Ad2-5-GGACTCCT-TCTACTCT_S149
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2488

description:
GBC_272-8-Ad1-34-Ad2-50_S410
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2562

description:
277-6-Ad1-1-Ad2-7-CTCTCTAC-GCGATCTA_S7
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2558

description:
277-66-Ad1-3-Ad2-12-GTAGAGGA-AGAGGATA_S108
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2557

description:
277-65-Ad1-3-Ad2-11-AAGAGGCA-AGAGGATA_S107
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2487

description:
GBC_272-89-Ad1-39-Ad2-59_S539
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2486

description:
GBC_272-88-Ad1-39-Ad2-60_S540
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2556

description:
277-64-Ad1-3-Ad2-10-CGAGGCTG-AGAGGATA_S106
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2555

description:
277-63-Ad1-3-Ad2-6-TAGGCATG-AGAGGATA_S102
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2485

description:
GBC_272-87-Ad1-39-Ad2-52_S532
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2559

description:
277-67-Ad1-4-Ad2-4-TCCTGAGC-TCTACTCT_S148
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2483

description:
GBC_272-85-Ad1-39-Ad2-54_S534
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2482

description:
GBC_272-84-Ad1-38-Ad2-58_S514
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2553

description:
277-61-Ad1-3-Ad2-4-TCCTGAGC-AGAGGATA_S100
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2484

description:
GBC_272-86-Ad1-39-Ad2-53_S533
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2481

description:
GBC_272-83-Ad1-38-Ad2-59_S515
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2479

description:
GBC_272-81-Ad1-38-Ad2-52_S508
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2554

description:
277-62-Ad1-3-Ad2-5-GGACTCCT-AGAGGATA_S101
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2552

description:
277-60-Ad1-2-Ad2-12-GTAGAGGA-ATAGAGAG_S60
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2564

description:
277-71-Ad1-4-Ad2-11-AAGAGGCA-TCTACTCT_S155
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2566

description:
277-73-Ad1-5-Ad2-6-TAGGCATG-CTCCTTAC_S198
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2480

description:
GBC_272-82-Ad1-38-Ad2-60_S516
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2551

description:
277-5-Ad1-1-Ad2-8-CAGAGAGG-GCGATCTA_S8
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2478

description:
GBC_272-80-Ad1-38-Ad2-53_S509
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2477

description:
GBC_272-7-Ad1-34-Ad2-51_S411
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2549

description:
277-58-Ad1-2-Ad2-10-CGAGGCTG-ATAGAGAG_S58
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2476

description:
GBC_272-79-Ad1-38-Ad2-54_S510
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2547

description:
277-56-Ad1-2-Ad2-5-GGACTCCT-ATAGAGAG_S53
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2475

description:
GBC_272-78-Ad1-37-Ad2-58_S490
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2474

description:
GBC_272-77-Ad1-37-Ad2-59_S491
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2546

description:
277-55-Ad1-2-Ad2-4-TCCTGAGC-ATAGAGAG_S52
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2545

description:
277-54-Ad1-1-Ad2-12-GTAGAGGA-GCGATCTA_S12
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2472

description:
GBC_272-75-Ad1-37-Ad2-52_S484
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2544

description:
277-53-Ad1-1-Ad2-11-AAGAGGCA-GCGATCTA_S11
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2543

description:
277-52-Ad1-1-Ad2-10-CGAGGCTG-GCGATCTA_S10
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2473

description:
GBC_272-76-Ad1-37-Ad2-60_S492
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2471

description:
GBC_272-74-Ad1-37-Ad2-53_S485
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2470

description:
GBC_272-73-Ad1-37-Ad2-54_S486
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2469

description:
GBC_272-72-Ad1-36-Ad2-60_S468
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2541

description:
277-50-Ad1-1-Ad2-5-GGACTCCT-GCGATCTA_S5
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2468

description:
GBC_272-71-Ad1-36-Ad2-59_S467
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2539

description:
277-49-Ad1-1-Ad2-4-TCCTGAGC-GCGATCTA_S4
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2467

description:
GBC_272-70-Ad1-36-Ad2-58_S466
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2538

description:
277-48-Ad1-8-Ad2-9-GCTACGCT-AGGCTTAG_S345
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2466

description:
GBC_272-6-Ad1-33-Ad2-55_S391
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2540

description:
277-4-Ad1-1-Ad2-9-GCTACGCT-GCGATCTA_S9
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2465

description:
GBC_272-69-Ad1-36-Ad2-54_S462
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2537

description:
277-47-Ad1-8-Ad2-8-CAGAGAGG-AGGCTTAG_S344
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2548

description:
277-57-Ad1-2-Ad2-6-TAGGCATG-ATAGAGAG_S54
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2535

description:
277-45-Ad1-8-Ad2-3-AGGCAGAA-AGGCTTAG_S339
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2534

description:
277-44-Ad1-8-Ad2-2-CGTACTAG-AGGCTTAG_S338
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2533

description:
277-43-Ad1-8-Ad2-1-TAAGGCGA-AGGCTTAG_S337
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2462

description:
GBC_272-66-Ad1-35-Ad2-60_S444
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2463

description:
GBC_272-67-Ad1-36-Ad2-52_S460
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2464

description:
GBC_272-68-Ad1-36-Ad2-53_S461
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2461

description:
GBC_272-65-Ad1-35-Ad2-59_S443
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2460

description:
GBC_272-64-Ad1-35-Ad2-58_S442
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2542

description:
277-51-Ad1-1-Ad2-6-TAGGCATG-GCGATCTA_S6
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2532

description:
277-42-Ad1-7-Ad2-9-GCTACGCT-TACTCCTT_S297
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2531

description:
277-41-Ad1-7-Ad2-8-CAGAGAGG-TACTCCTT_S296
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2530

description:
277-40-Ad1-7-Ad2-7-CTCTCTAC-TACTCCTT_S295
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2529

description:
277-3-Ad1-1-Ad2-1-TAAGGCGA-GCGATCTA_S1
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2536

description:
277-46-Ad1-8-Ad2-7-CTCTCTAC-AGGCTTAG_S343
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2457

description:
GBC_272-61-Ad1-35-Ad2-52_S436
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2458

description:
GBC_272-62-Ad1-35-Ad2-53_S437
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2456

description:
GBC_272-60-Ad1-34-Ad2-60_S420
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2455

description:
GBC_272-5-Ad1-33-Ad2-56_S392
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2452

description:
GBC_272-57-Ad1-34-Ad2-54_S414
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2451

description:
GBC_272-56-Ad1-34-Ad2-53_S413
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2453

description:
GBC_272-58-Ad1-34-Ad2-58_S418
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2523

description:
277-34-Ad1-6-Ad2-7-CTCTCTAC-TATGCAGT_S247
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2525

description:
277-36-Ad1-6-Ad2-9-GCTACGCT-TATGCAGT_S249
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2526

description:
277-37-Ad1-7-Ad2-1-TAAGGCGA-TACTCCTT_S289
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2527

description:
277-38-Ad1-7-Ad2-2-CGTACTAG-TACTCCTT_S290
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2524

description:
277-35-Ad1-6-Ad2-8-CAGAGAGG-TATGCAGT_S248
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2522

description:
277-33-Ad1-6-Ad2-3-AGGCAGAA-TATGCAGT_S243
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2450

description:
GBC_272-55-Ad1-34-Ad2-52_S412
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2521

description:
277-32-Ad1-6-Ad2-2-CGTACTAG-TATGCAGT_S242
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2519

description:
277-30-Ad1-5-Ad2-9-GCTACGCT-CTCCTTAC_S201
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2459

description:
GBC_272-63-Ad1-35-Ad2-54_S438
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2518

description:
277-2-Ad1-1-Ad2-2-CGTACTAG-GCGATCTA_S2
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2447

description:
GBC_272-52-Ad1-33-Ad2-58_S394
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2528

description:
277-39-Ad1-7-Ad2-3-AGGCAGAA-TACTCCTT_S291
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2609

description:
278-25-Ad1-5-Ad2-13-TGGATCTG-CTCCTTAC_S205
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2454

description:
GBC_272-59-Ad1-34-Ad2-59_S419
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2515

description:
277-27-Ad1-5-Ad2-3-AGGCAGAA-CTCCTTAC_S195
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2516

description:
277-28-Ad1-5-Ad2-7-CTCTCTAC-CTCCTTAC_S199
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2514

description:
277-26-Ad1-5-Ad2-2-CGTACTAG-CTCCTTAC_S194
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2444

description:
GBC_272-4-Ad1-33-Ad2-57_S393
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2443

description:
GBC_272-49-Ad1-33-Ad2-52_S388
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2441

description:
GBC_272-47-Ad1-40-Ad2-56_S560
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2445

description:
GBC_272-50-Ad1-33-Ad2-53_S389
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2442

description:
GBC_272-48-Ad1-40-Ad2-57_S561
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2511

description:
277-23-Ad1-4-Ad2-8-CAGAGAGG-TCTACTCT_S152
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2512

description:
277-24-Ad1-4-Ad2-7-CTCTCTAC-TCTACTCT_S151
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2513

description:
277-25-Ad1-5-Ad2-1-TAAGGCGA-CTCCTTAC_S193
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2440

description:
GBC_272-46-Ad1-40-Ad2-55_S559
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2449

description:
GBC_272-54-Ad1-33-Ad2-60_S396
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2520

description:
277-31-Ad1-6-Ad2-1-TAAGGCGA-TATGCAGT_S241
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2510

description:
277-22-Ad1-4-Ad2-9-GCTACGCT-TCTACTCT_S153
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2438

description:
GBC_272-44-Ad1-40-Ad2-50_S554
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2437

description:
GBC_272-43-Ad1-40-Ad2-49_S553
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2508

description:
277-20-Ad1-4-Ad2-2-CGTACTAG-TCTACTCT_S146
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2446

description:
GBC_272-51-Ad1-33-Ad2-54_S390
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2436

description:
GBC_272-42-Ad1-39-Ad2-57_S537
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2435

description:
GBC_272-41-Ad1-39-Ad2-56_S536
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2506

description:
277-19-Ad1-4-Ad2-3-AGGCAGAA-TCTACTCT_S147
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2517

description:
277-29-Ad1-5-Ad2-8-CAGAGAGG-CTCCTTAC_S200
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2507

description:
277-1-Ad1-1-Ad2-3-AGGCAGAA-GCGATCTA_S3
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2505

description:
277-18-Ad1-3-Ad2-7-CTCTCTAC-AGAGGATA_S103
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2448

description:
GBC_272-53-Ad1-33-Ad2-59_S395
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2434

description:
GBC_272-40-Ad1-39-Ad2-55_S535
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2433

description:
GBC_272-3-Ad1-33-Ad2-49_S385
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2432

description:
GBC_272-39-Ad1-39-Ad2-51_S531
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2439

description:
GBC_272-45-Ad1-40-Ad2-51_S555
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2503

description:
277-16-Ad1-3-Ad2-9-GCTACGCT-AGAGGATA_S105
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2431

description:
GBC_272-38-Ad1-39-Ad2-50_S530
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2429

description:
GBC_272-36-Ad1-38-Ad2-57_S513
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2509

description:
277-21-Ad1-4-Ad2-1-TAAGGCGA-TCTACTCT_S145
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2501

description:
277-14-Ad1-3-Ad2-2-CGTACTAG-AGAGGATA_S98
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2499

description:
277-12-Ad1-2-Ad2-7-CTCTCTAC-ATAGAGAG_S55
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2504

description:
277-17-Ad1-3-Ad2-8-CAGAGAGG-AGAGGATA_S104
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2428

description:
GBC_272-35-Ad1-38-Ad2-56_S512
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2427

description:
GBC_272-34-Ad1-38-Ad2-55_S511
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2425

description:
GBC_272-32-Ad1-38-Ad2-50_S506
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell 2500

description:
277-13-Ad1-3-Ad2-3-AGGCAGAA-AGAGGATA_S99
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2502

description:
277-15-Ad1-3-Ad2-1-TAAGGCGA-AGAGGATA_S97
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell 2498

description:
277-11-Ad1-2-Ad2-8-CAGAGAGG-ATAGAGAG_S56
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2426

description:
GBC_272-33-Ad1-38-Ad2-51_S507
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2430

description:
GBC_272-37-Ad1-39-Ad2-49_S529
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2424

description:
GBC_272-31-Ad1-38-Ad2-49_S505
GBC_counts_GM12878_experiment2.txt


title: TriplexRNASeq_U2OS_nuclear_rep1

city: Aachen

first: Ivan

middle: G.

last: Costa

state: NRW

address: Pauwelsstr. 19

department: RWTH Aachen Medical Faculty

country: Germany

institute: Institute for Computational Genomics

data_processing:
Illumina Nextseq500 Platform was used
Adapter sequences were removed from the sequence reads by Trim galore with default parameters. Their quality was check by FASTQC. RNA sequence reads were aligned to human genome version hg38 using STAR with stringent parameters, allowing maximal one mismatch. Duplicate reads were filtered out.
As TriplexRNA-seq protocols enrich fragmented RNA associated with DNA, we adapted the ChIP-seq based differential peak caller THOR, taking into account reads in one DNA strand. Estimation of fragment sizes was based on Agilent Bioanalyzer profiles of libraries. Differential peak calling was performed for selected pairs of fractions (adjusted p-value < 10-500 and fold change (FC) > 1 in log2; Negative Binomial test). Peaks enriched in DNA-IP (vs. nuclear) and SPRI-size selection (vs. nuclear) are defined as DNA-associated RNA or TriplexRNA regions. Chromatin-associated and nuclear RNA are defined as peaks enriched in these fractions as compared to RNAs isolated by DNA-IP.
Genome_build: hg38

growth_protocol: HeLa S3 cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 10% FBS, 1% penicillin/streptomycin and 2% Na-pyruvate. U2OS cells were cultured in DMEM supplemented with 5% FBS and 1% penicillin/streptomycin.

extract_protocol:
Chromatin was purified and chromatin-associated nucleic acids were isolated. Following the fragmentation of RNA, long DNA and DNA-associated RNA were separated from free RNA by Solid Phase Reversible Immobilization (SPRI)-based paramagnetic bead size selection. Alternatively, DNA-associated RNA was immunopurified using Anti-DNA antibody (DNA-IP).
Recovered RNAs from biological replicates were subjected rRNA depletion (except DNA-IP samples) using the NEBNext rRNA depletion kit (NEB). RNA libraries were prepared using the NEBNext Ultra II Directional RNA Library Prep Kit and NEBNext Multiplex Oligos for Illumina (NEB).

tag: cell line

value: Human bone osteosarcoma

tag: molecule subtype

value: Enriched nuclear RNA


title: GM12878 cell 2497

description:
277-10-Ad1-2-Ad2-9-GCTACGCT-ATAGAGAG_S57
Peak_counts_GM12878_experiment2.txt.gz


title: GM12878 cell number 2420

description:
GBC_272-28-Ad1-37-Ad2-55_S487
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2422

description:
GBC_272-2-Ad1-33-Ad2-50_S386
GBC_counts_GM12878_experiment2.txt


title: TriplexRNASeq_U2OS_IP_rep1

value: Enriched DNA-assoc.RNA


title: GM12878 cell number 2421

description:
GBC_272-29-Ad1-37-Ad2-56_S488
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2419

description:
GBC_272-27-Ad1-37-Ad2-51_S483
GBC_counts_GM12878_experiment2.txt


title: TriplexRNASeq_U2OS_IP_rep2


title: TriplexRNASeq_IP_rep2

description:
Enriched nuclear RNA
Human cervix carcinoma

source_name: HeLa S3 cells

growth_protocol: HeLa S3 cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 10% FBS, 1% penicillin/streptomycin and 2% Na-pyruvate.

value: HeLa


title: TriplexRNASeq_IP_rep3


title: TriplexRNASeq_U2OS_nuclear_rep 2


title: GM12878 cell number 2418

description:
GBC_272-26-Ad1-37-Ad2-50_S482
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2417

description:
GBC_272-25-Ad1-37-Ad2-49_S481
GBC_counts_GM12878_experiment2.txt


title: TriplexRNASeq_SPRI_rep4


title: GM12878 cell number 2414

description:
GBC_272-22-Ad1-36-Ad2-57_S465
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2415

description:
GBC_272-23-Ad1-36-Ad2-56_S464
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2423

description:
GBC_272-30-Ad1-37-Ad2-57_S489
GBC_counts_GM12878_experiment2.txt


title: TriplexRNASeq_chromatin_rep4


title: GM12878 cell number 2416

description:
GBC_272-24-Ad1-36-Ad2-55_S463
GBC_counts_GM12878_experiment2.txt


title: TriplexRNASeq_chromatin_rep3


title: TriplexRNASeq_SPRI_rep1


title: TriplexRNASeq_SPRI_rep2


title: GM12878 cell number 2411

description:
GBC_272-1-Ad1-33-Ad2-51_S387
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2413

description:
GBC_272-21-Ad1-36-Ad2-49_S457
GBC_counts_GM12878_experiment2.txt


title: TriplexRNASeq_chromatin_rep2


title: TriplexRNASeq_chromatin_rep1


title: TriplexRNASeq_IP_rep1


title: TriplexRNASeq_nuclear_rep2


title: GM12878 cell number 2409

description:
GBC_272-18-Ad1-35-Ad2-55_S439
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2408

description:
GBC_272-17-Ad1-35-Ad2-56_S440
GBC_counts_GM12878_experiment2.txt


title: TriplexRNASeq_nuclear_rep1


title: GM12878 cell number 2410

description:
GBC_272-19-Ad1-36-Ad2-51_S459
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2406

description:
GBC_272-15-Ad1-35-Ad2-49_S433
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2407

description:
GBC_272-16-Ad1-35-Ad2-57_S441
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2405

description:
GBC_272-14-Ad1-35-Ad2-50_S434
GBC_counts_GM12878_experiment2.txt


title: TriplexDNASeq_rep3_plus_RNA_ligation

description: Human cervix carcinoma

data_processing:
Illumina Nextseq500 Platform was used
Sequenced reads were trimmed for adaptor sequence and their quality was assessed using Fastqc, and the reads were mapped to hg38 whole genome using BWA  (0.7.15-r1140) allowing one mismatch (MAPQ >1) and filtered by Blacklisted genomic regions of hg38 (ENCODE).
The differential peak caller THOR was used (default parameters) to find regions enriched in TriplexDNASeq (RNA-bound DNAs) vs. controls (control DNA) each with quadruplicates (adjusted p-value <10-3, Negative Binomial test).
Genome_build: hg38

extract_protocol:
Chromatin was purified and chromatin-associated nucleic acids were isolated. Following the ligation of a biotinylated linker oligonucleotide to the 3’-end of RNA, RNA and associated DNA complexes were captured on streptavidin beads. RNA-associated DNA was eluted and sequenced.
DNA libraries from biological replicates were prepared using the NEBNext Ultra II DNA Library Prep Kit for Illumina (NEB) and NEBNext Multiplex Oligos for Illumina (NEB).

value: Hela S3


title: TriplexDNASeq_rep4_plus_RNA_ligation

description: Human cervix carcinoma


title: TriplexDNASeq_rep2_plus_RNA_ligation

description: Human cervix carcinoma


title: TriplexRNASeq_SPRI_rep3


title: GM12878 cell number 2404

description:
GBC_272-13-Ad1-35-Ad2-51_S435
GBC_counts_GM12878_experiment2.txt


title: TriplexDNASeq_rep1_plus_RNA_ligation

description: Human cervix carcinoma


title: GM12878 cell number 2403

description:
GBC_272-12-Ad1-34-Ad2-55_S415
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2412

description:
GBC_272-20-Ad1-36-Ad2-50_S458
GBC_counts_GM12878_experiment2.txt


title: TriplexDNASeq_rep4_minus_RNA_ligation

description: Human cervix carcinoma


title: GM12878 cell number 2402

description:
GBC_272-11-Ad1-34-Ad2-56_S416
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2400

description:
GBC_271-9-Ad1-26-Ad2-37_S229
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2401

description:
GBC_272-10-Ad1-34-Ad2-57_S417
GBC_counts_GM12878_experiment2.txt


title: TriplexDNASeq_rep3_minus_RNA_ligation

description: Human cervix carcinoma


title: TriplexDNASeq_rep2_minus_RNA_ligation

description: Human cervix carcinoma


title: TriplexDNASeq_rep1_minus_RNA_ligation

description: Human cervix carcinoma


title: CaptureSeq_NEAT1_TFR2_rep2

description: Human cervix carcinoma

data_processing:
Illumina Nextseq500 Platform was used
Sequenced reads were trimmed for adaptor sequence and their quality was assessed using Fastqc, and the reads were mapped to hg38 whole genome using BWA  (0.7.15-r1140) allowing one mismatch (MAPQ >1) and filtered by Blacklisted genomic regions of hg38 (ENCODE).
We adapted the ChIP-seq based differential peak caller THOR, taking into account reads in one DNA strand. We implemented a distinct approach for joining small bins (25 bps) and p-value corrections based in the Simes’ method. Differential peak calling was performed for selected pairs of fractions (adjusted p-value < 10-15 and fold change (FC) > 1.5 in log2; Negative Binomial test).
Genome_build: hg38
Supplementary_files_format_and_content: Differential peak calling was performed by RGT-THOR

extract_protocol:
Genomic DNA was fragmented by sonication and incubated with biotinylated RNA oligonucleotides to allow DNA:RNA triplex formation. After binding to streptavidin beads, associated DNA was eluted and sequenced.
DNA libraries from biological replicates were prepared using the NEBNext Ultra II DNA Library Prep Kit for Illumina (NEB) and NEBNext Multiplex Oligos for Illumina (NEB).


title: CaptureSeq_NEAT1_TFR2_rep3

description: Human cervix carcinoma


title: GM12878 cell number 2399

description:
GBC_271-96-Ad1-32-Ad2-46_S382
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2397

description:
GBC_271-94-Ad1-32-Ad2-48_S384
GBC_counts_GM12878_experiment2.txt


title: CaptureSeq_NEAT1_TFR2_rep1

description: Human cervix carcinoma


title: GM12878 cell number 2396

description:
GBC_271-93-Ad1-32-Ad2-40_S376
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2395

description:
GBC_271-92-Ad1-32-Ad2-41_S377
GBC_counts_GM12878_experiment2.txt


title: CaptureSeq_NEAT1_TFR1_rep3

description: Human cervix carcinoma


title: GM12878 cell number 2394

description:
GBC_271-91-Ad1-32-Ad2-42_S378
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2393

description:
GBC_271-90-Ad1-31-Ad2-46_S358
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2391

description:
GBC_271-89-Ad1-31-Ad2-47_S359
GBC_counts_GM12878_experiment2.txt


title: CaptureSeq_NEAT1_TFR1_rep2

description: Human cervix carcinoma


title: ASO_CaptureSeq_rep3_sense

description: Human cervix carcinoma

data_processing:
Illumina Nextseq500 Platform was used
Sequenced reads were trimmed for adaptor sequence and their quality was assessed using Fastqc, and the reads were mapped to hg38 whole genome using BWA  (0.7.15-r1140) allowing one mismatch (MAPQ >1) and filtered by Blacklisted genomic regions of hg38 (ENCODE).
The differential peak caller THOR was used (default parameters) to find regions enriched in antisense vs. controls (sense)  (adjusted p-value <10-3, Negative Binomial test).
Genome_build: hg38

growth_protocol: Cells were grown in Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with 10% FBS, 1% penicillin/streptomycin and 2% Na-pyruvate.

extract_protocol:
Chromatin was purified and chromatin-associated nucleic acids were isolated. Following the hybridization of the biotinylated ASO to NEAT1, NEAT1 and associated DNA complexes were captured on streptavidin beads. NEAT1-associated DNA was eluted and sequenced.
DNA libraries were prepared using the NEBNext Ultra II DNA Library Prep Kit for Illumina (NEB) and NEBNext Multiplex Oligos for Illumina (NEB).


title: GM12878 cell number 2392

description:
GBC_271-8-Ad1-26-Ad2-38_S230
GBC_counts_GM12878_experiment2.txt


title: CaptureSeq_NEAT1_TFR1_rep1

description: Human cervix carcinoma


title: CaptureSeq_NEAT1_control_rep1

description: Human cervix carcinoma


title: GM12878 cell number 2389

description:
GBC_271-87-Ad1-31-Ad2-40_S352
GBC_counts_GM12878_experiment2.txt


title: CaptureSeq_NEAT1_control_rep3

description: Human cervix carcinoma


title: GM12878 cell number 2390

description:
GBC_271-88-Ad1-31-Ad2-48_S360
GBC_counts_GM12878_experiment2.txt


title: ASO_CaptureSeq_rep1_sense

description: Human cervix carcinoma


title: GM12878 cell number 2388

description:
GBC_271-86-Ad1-31-Ad2-41_S353
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2398

description:
GBC_271-95-Ad1-32-Ad2-47_S383
GBC_counts_GM12878_experiment2.txt


title: ASO_CaptureSeq_rep2_sense

description: Human cervix carcinoma


title: ASO_CaptureSeq_rep3_antisense

description: Human cervix carcinoma


title: ASO_CaptureSeq_rep2_antisense

description: Human cervix carcinoma


title: ASO_CaptureSeq_rep1_antisense

description: Human cervix carcinoma


title: GM12878 cell number 2385

description:
GBC_271-83-Ad1-30-Ad2-47_S335
GBC_counts_GM12878_experiment2.txt


title: ASO_CaptureSeq_MCF7_sense

description: Human breast adenocarcinoma

source_name: MCF7 cells


title: ASO_CaptureSeq_MCF7_antisense

description: Human breast adenocarcinoma


title: GM12878 cell number 2382

description:
GBC_271-80-Ad1-30-Ad2-41_S329
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2383

description:
GBC_271-81-Ad1-30-Ad2-40_S328
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1151

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-9-Ad1_18-Ad2_13_S421


title: GM12878 cell number 2381

description:
GBC_271-7-Ad1-26-Ad2-39_S231
GBC_counts_GM12878_experiment2.txt


title: CaptureSeq_NEAT1_control_rep2

description: Human cervix carcinoma


title: Keratinocyte cell 1149

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-95-Ad1_24-Ad2_23_S575


title: Keratinocyte cell 1147

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-93-Ad1_24-Ad2_16_S568


title: Keratinocyte cell 1148

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-94-Ad1_24-Ad2_24_S576


title: GM12878 cell number 2378

description:
GBC_271-77-Ad1-29-Ad2-47_S311
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1145

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-91-Ad1_24-Ad2_18_S570


title: GM12878 cell number 2377

description:
GBC_271-76-Ad1-29-Ad2-48_S312
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2380

description:
GBC_271-79-Ad1-30-Ad2-42_S330
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1146

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-92-Ad1_24-Ad2_17_S569


title: Keratinocyte cell 1144

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-90-Ad1_23-Ad2_22_S550


title: GM12878 cell number 2386

description:
GBC_271-84-Ad1-30-Ad2-46_S334
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2376

description:
GBC_271-75-Ad1-29-Ad2-40_S304
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2375

description:
GBC_271-74-Ad1-29-Ad2-41_S305
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2387

description:
GBC_271-85-Ad1-31-Ad2-42_S354
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1143

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-8-Ad1_18-Ad2_14_S422


title: Keratinocyte cell 1142

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-89-Ad1_23-Ad2_23_S551


title: Keratinocyte cell 1141

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-88-Ad1_23-Ad2_24_S552


title: GM12878 cell number 2384

description:
GBC_271-82-Ad1-30-Ad2-48_S336
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2373

description:
GBC_271-72-Ad1-28-Ad2-48_S288
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2372

description:
GBC_271-71-Ad1-28-Ad2-47_S287
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2374

description:
GBC_271-73-Ad1-29-Ad2-42_S306
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1150

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-96-Ad1_24-Ad2_22_S574


title: GM12878 cell number 2369

description:
GBC_271-69-Ad1-28-Ad2-42_S282
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2370

description:
GBC_271-6-Ad1-25-Ad2-43_S211
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1137

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-84-Ad1_22-Ad2_22_S526


title: Keratinocyte cell 1140

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-87-Ad1_23-Ad2_16_S544


title: GM12878 cell number 2371

description:
GBC_271-70-Ad1-28-Ad2-46_S286
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2379

description:
GBC_271-78-Ad1-29-Ad2-46_S310
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2368

description:
GBC_271-68-Ad1-28-Ad2-41_S281
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2367

description:
GBC_271-67-Ad1-28-Ad2-40_S280
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2366

description:
GBC_271-66-Ad1-27-Ad2-48_S264
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1135

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-82-Ad1_22-Ad2_24_S528


title: GM12878 cell number 2364

description:
GBC_271-64-Ad1-27-Ad2-46_S262
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2365

description:
GBC_271-65-Ad1-27-Ad2-47_S263
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1132

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-7-Ad1_18-Ad2_15_S423


title: GM12878 cell number 2363

description:
GBC_271-63-Ad1-27-Ad2-42_S258
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1138

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-85-Ad1_23-Ad2_18_S546


title: Keratinocyte cell 1136

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-83-Ad1_22-Ad2_23_S527


title: Keratinocyte cell 1130

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-78-Ad1_21-Ad2_22_S502


title: GM12878 cell number 2362

description:
GBC_271-62-Ad1-27-Ad2-41_S257
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1133

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-80-Ad1_22-Ad2_17_S521


title: GM12878 cell number 2361

description:
GBC_271-61-Ad1-27-Ad2-40_S256
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1129

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-77-Ad1_21-Ad2_23_S503


title: GM12878 cell number 2359

description:
GBC_271-5-Ad1-25-Ad2-44_S212
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1128

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-76-Ad1_21-Ad2_24_S504


title: GM12878 cell number 2360

description:
GBC_271-60-Ad1-26-Ad2-48_S240
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1127

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-75-Ad1_21-Ad2_16_S496


title: Keratinocyte cell 1131

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-79-Ad1_22-Ad2_18_S522


title: Keratinocyte cell 1139

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-86-Ad1_23-Ad2_17_S545


title: GM12878 cell number 2358

description:
GBC_271-59-Ad1-26-Ad2-47_S239
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1126

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-74-Ad1_21-Ad2_17_S497


title: Keratinocyte cell 1125

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-73-Ad1_21-Ad2_18_S498


title: GM12878 cell number 2357

description:
GBC_271-58-Ad1-26-Ad2-46_S238
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1124

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-72-Ad1_20-Ad2_24_S480


title: GM12878 cell number 2356

description:
GBC_271-57-Ad1-26-Ad2-42_S234
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2355

description:
GBC_271-56-Ad1-26-Ad2-41_S233
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1134

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-81-Ad1_22-Ad2_16_S520


title: Keratinocyte cell 1122

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-70-Ad1_20-Ad2_22_S478


title: GM12878 cell number 2354

description:
GBC_271-55-Ad1-26-Ad2-40_S232
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1123

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-71-Ad1_20-Ad2_23_S479


title: GM12878 cell number 2353

description:
GBC_271-54-Ad1-25-Ad2-48_S216
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1121

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-6-Ad1_17-Ad2_19_S403


title: Keratinocyte cell 1120

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-69-Ad1_20-Ad2_18_S474


title: GM12878 cell number 2352

description:
GBC_271-53-Ad1-25-Ad2-47_S215
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1119

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-68-Ad1_20-Ad2_17_S473


title: GM12878 cell number 2351

description:
GBC_271-52-Ad1-25-Ad2-46_S214
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1117

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-66-Ad1_19-Ad2_24_S456


title: Keratinocyte cell 1116

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-65-Ad1_19-Ad2_23_S455


title: GM12878 cell number 2350

description:
GBC_271-51-Ad1-25-Ad2-42_S210
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2347

description:
GBC_271-49-Ad1-25-Ad2-40_S208
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2348

description:
GBC_271-4-Ad1-25-Ad2-45_S213
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2346

description:
GBC_271-48-Ad1-32-Ad2-45_S381
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2345

description:
GBC_271-47-Ad1-32-Ad2-44_S380
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2349

description:
GBC_271-50-Ad1-25-Ad2-41_S209
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1113

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-62-Ad1_19-Ad2_17_S449


title: Keratinocyte cell 1112

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-61-Ad1_19-Ad2_16_S448


title: GM12878 cell number 2343

description:
GBC_271-45-Ad1-32-Ad2-39_S375
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1115

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-64-Ad1_19-Ad2_22_S454


title: Keratinocyte cell 1114

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-63-Ad1_19-Ad2_18_S450


title: GM12878 cell number 2344

description:
GBC_271-46-Ad1-32-Ad2-43_S379
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1111

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-60-Ad1_18-Ad2_24_S432


title: GM12878 cell number 2342

description:
GBC_271-44-Ad1-32-Ad2-38_S374
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2341

description:
GBC_271-43-Ad1-32-Ad2-37_S373
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1110

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-5-Ad1_17-Ad2_20_S404


title: Keratinocyte cell 1109

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-59-Ad1_18-Ad2_23_S431


title: GM12878 cell number 2340

description:
GBC_271-42-Ad1-31-Ad2-45_S357
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2339

description:
GBC_271-41-Ad1-31-Ad2-44_S356
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1108

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-58-Ad1_18-Ad2_22_S430


title: Keratinocyte cell 1118

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-67-Ad1_20-Ad2_16_S472


title: GM12878 cell number 2338

description:
GBC_271-40-Ad1-31-Ad2-43_S355
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1106

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-56-Ad1_18-Ad2_17_S425


title: GM12878 cell number 2337

description:
GBC_271-3-Ad1-25-Ad2-37_S205
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1105

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-55-Ad1_18-Ad2_16_S424


title: GM12878 cell number 2336

description:
GBC_271-39-Ad1-31-Ad2-39_S351
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2335

description:
GBC_271-38-Ad1-31-Ad2-38_S350
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1104

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-54-Ad1_17-Ad2_24_S408


title: Keratinocyte cell 1103

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-53-Ad1_17-Ad2_23_S407


title: GM12878 cell number 2333

description:
GBC_271-36-Ad1-30-Ad2-45_S333
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1102

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-52-Ad1_17-Ad2_22_S406


title: Keratinocyte cell 1099

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-4-Ad1_17-Ad2_21_S405


title: GM12878 cell number 2334

description:
GBC_271-37-Ad1-31-Ad2-37_S349
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1101

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-51-Ad1_17-Ad2_18_S402


title: Keratinocyte cell 1100

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-50-Ad1_17-Ad2_17_S401


title: GM12878 cell number 2332

description:
GBC_271-35-Ad1-30-Ad2-44_S332
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2330

description:
GBC_271-33-Ad1-30-Ad2-39_S327
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2331

description:
GBC_271-34-Ad1-30-Ad2-43_S331
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2328

description:
GBC_271-31-Ad1-30-Ad2-37_S325
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1097

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-48-Ad1_24-Ad2_21_S573


title: Keratinocyte cell 1096

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-47-Ad1_24-Ad2_20_S572


title: GM12878 cell number 2327

description:
GBC_271-30-Ad1-29-Ad2-45_S309
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1095

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-46-Ad1_24-Ad2_19_S571


title: GM12878 cell number 2326

description:
GBC_271-2-Ad1-25-Ad2-38_S206
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2325

description:
GBC_271-29-Ad1-29-Ad2-44_S308
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1094

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-45-Ad1_24-Ad2_15_S567


title: GM12878 cell number 2323

description:
GBC_271-27-Ad1-29-Ad2-39_S303
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2324

description:
GBC_271-28-Ad1-29-Ad2-43_S307
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1093

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-44-Ad1_24-Ad2_14_S566


title: Keratinocyte cell 1092

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-43-Ad1_24-Ad2_13_S565


title: GM12878 cell number 2322

description:
GBC_271-26-Ad1-29-Ad2-38_S302
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2321

description:
GBC_271-25-Ad1-29-Ad2-37_S301
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1090

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-41-Ad1_23-Ad2_20_S548


title: Keratinocyte cell 1091

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-42-Ad1_23-Ad2_21_S549


title: Keratinocyte cell 1107

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-57-Ad1_18-Ad2_18_S426


title: Keratinocyte cell 1089

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-40-Ad1_23-Ad2_19_S547


title: Keratinocyte cell 1088

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-3-Ad1_17-Ad2_13_S397


title: GM12878 cell number 2320

description:
GBC_271-24-Ad1-28-Ad2-43_S283
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1087

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-39-Ad1_23-Ad2_15_S543


title: Keratinocyte cell 1098

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-49-Ad1_17-Ad2_16_S400


title: Keratinocyte cell 1086

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-38-Ad1_23-Ad2_14_S542


title: GM12878 cell number 2318

description:
GBC_271-22-Ad1-28-Ad2-45_S285
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2317

description:
GBC_271-21-Ad1-28-Ad2-37_S277
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2319

description:
GBC_271-23-Ad1-28-Ad2-44_S284
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2316

description:
GBC_271-20-Ad1-28-Ad2-38_S278
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1084

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-36-Ad1_22-Ad2_21_S525


title: GM12878 cell number 2315

description:
GBC_271-1-Ad1-25-Ad2-39_S207
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2329

description:
GBC_271-32-Ad1-30-Ad2-38_S326
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1083

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-35-Ad1_22-Ad2_20_S524


title: Keratinocyte cell 1082

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-34-Ad1_22-Ad2_19_S523


title: GM12878 cell number 2313

description:
GBC_271-18-Ad1-27-Ad2-43_S259
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2314

description:
GBC_271-19-Ad1-28-Ad2-39_S279
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1085

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-37-Ad1_23-Ad2_13_S541


title: GM12878 cell number 2312

description:
GBC_271-17-Ad1-27-Ad2-44_S260
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1081

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-33-Ad1_22-Ad2_15_S519


title: Keratinocyte cell 1080

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-32-Ad1_22-Ad2_14_S518


title: GM12878 cell number 2311

description:
GBC_271-16-Ad1-27-Ad2-45_S261
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2310

description:
GBC_271-15-Ad1-27-Ad2-37_S253
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1079

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-31-Ad1_22-Ad2_13_S517


title: GM12878 cell number 2309

description:
GBC_271-14-Ad1-27-Ad2-38_S254
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1078

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-30-Ad1_21-Ad2_21_S501


title: Keratinocyte cell 1076

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-29-Ad1_21-Ad2_20_S500


title: Keratinocyte cell 1077

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-2-Ad1_17-Ad2_14_S398


title: GM12878 cell number 2307

description:
GBC_271-12-Ad1-26-Ad2-43_S235
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2308

description:
GBC_271-13-Ad1-27-Ad2-39_S255
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1075

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-28-Ad1_21-Ad2_19_S499


title: GM12878 cell number 2304

description:
GBC_270-9-Ad1-18-Ad2-13_S37
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1073

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-26-Ad1_21-Ad2_14_S494


title: GM12878 cell number 2306

description:
GBC_271-11-Ad1-26-Ad2-44_S236
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2305

description:
GBC_271-10-Ad1-26-Ad2-45_S237
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2303

description:
GBC_270-96-Ad1-24-Ad2-22_S190
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2302

description:
GBC_270-95-Ad1-24-Ad2-23_S191
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1071

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-24-Ad1_20-Ad2_19_S475


title: Keratinocyte cell 1069

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-22-Ad1_20-Ad2_21_S477


title: Keratinocyte cell 1068

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-21-Ad1_20-Ad2_13_S469


title: Keratinocyte cell 1067

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-20-Ad1_20-Ad2_14_S470


title: GM12878 cell number 2299

description:
GBC_270-92-Ad1-24-Ad2-17_S185
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2300

description:
GBC_270-93-Ad1-24-Ad2-16_S184
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2298

description:
GBC_270-91-Ad1-24-Ad2-18_S186
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2301

description:
GBC_270-94-Ad1-24-Ad2-24_S192
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1065

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-19-Ad1_20-Ad2_15_S471


title: GM12878 cell number 2297

description:
GBC_270-90-Ad1-23-Ad2-22_S166
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1066

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-1-Ad1_17-Ad2_15_S399


title: Keratinocyte cell 1064

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-18-Ad1_19-Ad2_19_S451


title: Keratinocyte cell 1063

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-17-Ad1_19-Ad2_20_S452


title: GM12878 cell number 2295

description:
GBC_270-89-Ad1-23-Ad2-23_S167
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1062

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-16-Ad1_19-Ad2_21_S453


title: GM12878 cell number 2293

description:
GBC_270-87-Ad1-23-Ad2-16_S160
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1061

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-15-Ad1_19-Ad2_13_S445


title: GM12878 cell number 2292

description:
GBC_270-86-Ad1-23-Ad2-17_S161
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1072

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-25-Ad1_21-Ad2_13_S493


title: Keratinocyte cell 1074

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-27-Ad1_21-Ad2_15_S495


title: Keratinocyte cell 1060

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-14-Ad1_19-Ad2_14_S446


title: Keratinocyte cell 1070

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-23-Ad1_20-Ad2_20_S476


title: Keratinocyte cell 1059

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-13-Ad1_19-Ad2_15_S447


title: GM12878 cell number 2291

description:
GBC_270-85-Ad1-23-Ad2-18_S162
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1058

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-12-Ad1_18-Ad2_19_S427


title: Keratinocyte cell 1057

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-11-Ad1_18-Ad2_20_S428


title: GM12878 cell number 2288

description:
GBC_270-82-Ad1-22-Ad2-24_S144
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2289

description:
GBC_270-83-Ad1-22-Ad2-23_S143
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1056

description:
Peak_counts_Keratinocyte_KO.txt.gz
912-10-Ad1_18-Ad2_21_S429


title: GM12878 cell number 2287

description:
GBC_270-81-Ad1-22-Ad2-16_S136
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2286

description:
GBC_270-80-Ad1-22-Ad2-17_S137
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1054

description:
Peak_counts_Keratinocyte_KO.txt.gz
911-96-Ad1_24-Ad2_10_S562


title: GM12878 cell number 2285

description:
GBC_270-7-Ad1-18-Ad2-15_S39
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2296

description:
GBC_270-8-Ad1-18-Ad2-14_S38
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2284

description:
GBC_270-79-Ad1-22-Ad2-18_S138
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2294

description:
GBC_270-88-Ad1-23-Ad2-24_S168
GBC_counts_GM12878_experiment2.txt


title: GM12878 cell number 2283

description:
GBC_270-78-Ad1-21-Ad2-22_S118
GBC_counts_GM12878_experiment2.txt


title: Keratinocyte cell 1051

description:
Peak_counts_Keratinocyte_KO.txt.gz
911-93-Ad1_24-Ad2_4_S556