title: 770042_spleen_Isotype_11day

description:
770042
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770041_spleen_Isotype_11day

status: Public on Nov 02 2018

type: SRA

city: Tarrytown

first: Wen

last: Zhang

address: 777 Old Saw Mill River Road

country: USA

institute: Regeneron Pharma.

description:
770041
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt

library_source: transcriptomic

data_processing:
Raw sequence data (BCL files) were converted to FASTQ format via Illumina Casava 1.8.2.
Reads were decoded based on their barcodes.
Read quality was evaluated using FastQC (www.bioinformatics. babraham.ac.uk/projects/fastqc/).
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: Expression-in-FPKM.txt: Tab-delimited text file includes RPKM values for each Sample.

molecule: total RNA

organism: Mus musculus

extract_protocol:
FACS sorted T cells were mixed with C1 Cell Suspension Reagent (Fluidigm) before loading onto a 5- to 10-μm C1 Integrated Fluidic Circuit (IFC; Fluidigm). Cell lysing, were performed on the C1 Single-Cell Auto Prep IFC, as specified by the manufacturer (protocol 100-7168 E1).
The SMARTer Ultra Low RNA Kit (Clontech) was used for cDNA synthesis from the single cells. Illumina NGS libraries were constructed using the Nextera XT DNA Sample Prep kit (Illumina), according to the manufacturer’s recommendations (protocol 100-7168 E1).

tag: strain/background

tag: tissue

value: spleen

tag: cell type

value: CD8+ T cell

tag: treatment

value: Isotype

tag: time point


title: 770040_spleen_Isotype_11day

description:
770040
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770039_spleen_Isotype_11day

description:
770039
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770036_spleen_Isotype_11day

description:
770036
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770037_spleen_Isotype_11day

description:
770037
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770038_spleen_Isotype_11day

description:
770038
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770035_spleen_Isotype_11day

description:
770035
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770033_spleen_Isotype_11day

description:
770033
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770034_spleen_Isotype_11day

description:
770034
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770032_spleen_Isotype_11day

description:
770032
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770030_spleen_Isotype_11day

description:
770030
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770029_spleen_Isotype_11day

description:
770029
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770028_spleen_Isotype_11day

description:
770028
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770022_spleen_Isotype_11day

description:
770022
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770027_spleen_Isotype_11day

description:
770027
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770021_spleen_Isotype_11day

description:
770021
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770024_spleen_Isotype_11day

description:
770024
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770023_spleen_Isotype_11day

description:
770023
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770020_spleen_Isotype_11day

description:
770020
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770047_spleen_Isotype_11day

description:
770047
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770025_spleen_Isotype_11day

description:
770025
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770046_spleen_Isotype_11day

description:
770046
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770017_tumor_Isotype_11day

description:
770017
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt

value: colon tumor


title: 770016_tumor_Isotype_11day

description:
770016
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770018_tumor_Isotype_11day

description:
770018
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770015_tumor_Isotype_11day

description:
770015
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770012_tumor_Isotype_11day

description:
770012
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770011_tumor_Isotype_11day

description:
770011
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770019_spleen_Isotype_11day

description:
770019
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770013_tumor_Isotype_11day

description:
770013
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770009_tumor_Isotype_11day

description:
770009
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770008_tumor_Isotype_11day

description:
770008
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770007_tumor_Isotype_11day

description:
770007
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770014_tumor_Isotype_11day

description:
770014
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770006_tumor_Isotype_11day

description:
770006
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770004_tumor_Isotype_11day

description:
770004
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770005_tumor_Isotype_11day

description:
770005
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770026_spleen_Isotype_11day

description:
770026
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770002_tumor_Isotype_11day

description:
770002
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770031_spleen_Isotype_11day

description:
770031
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770003_tumor_Isotype_11day

description:
770003
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770001_tumor_Isotype_11day

description:
770001
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769995_tumor_Isotype_11day

description:
769995
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769998_tumor_Isotype_11day

description:
769998
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769997_tumor_Isotype_11day

description:
769997
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770000_tumor_Isotype_11day

description:
770000
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769999_tumor_Isotype_11day

description:
769999
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769996_tumor_Isotype_11day

description:
769996
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769994_tumor_Isotype_11day

description:
769994
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769993_tumor_Isotype_11day

description:
769993
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769989_tumor_Isotype_11day

description:
769989
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769991_tumor_Isotype_11day

description:
769991
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769988_tumor_Isotype_11day

description:
769988
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 770010_tumor_Isotype_11day

description:
770010
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769992_tumor_Isotype_11day

description:
769992
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769986_tumor_Isotype_11day

description:
769986
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769987_tumor_Isotype_11day

description:
769987
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769985_tumor_Isotype_11day

description:
769985
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769984_tumor_Isotype_11day

description:
769984
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769982_tumor_Isotype_11day

description:
769982
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769981_tumor_Isotype_11day

description:
769981
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769983_tumor_Isotype_11day

description:
769983
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769980_tumor_Isotype_11day

description:
769980
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769975_tumor_Isotype_11day

description:
769975
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769979_tumor_Isotype_11day

description:
769979
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769974_tumor_Isotype_11day

description:
769974
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769977_tumor_Isotype_11day

description:
769977
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769976_tumor_Isotype_11day

description:
769976
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769973_tumor_Isotype_11day

description:
769973
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769972_tumor_Isotype_11day

description:
769972
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769971_tumor_Isotype_11day

description:
769971
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769970_tumor_Isotype_11day

description:
769970
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769967_tumor_Isotype_11day

description:
769967
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769968_tumor_Isotype_11day

description:
769968
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769966_tumor_Isotype_11day

description:
769966
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769965_tumor_Isotype_11day

description:
769965
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769990_tumor_Isotype_11day

description:
769990
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769964_tumor_Isotype_11day

description:
769964
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769963_tumor_Isotype_11day

description:
769963
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769962_tumor_Isotype_11day

description:
769962
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769960_tumor_Isotype_11day

description:
769960
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769957_tumor_Isotype_11day

description:
769957
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769955_tumor_Isotype_11day

description:
769955
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769959_tumor_Isotype_11day

description:
769959
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769958_tumor_Isotype_11day

description:
769958
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769954_tumor_Isotype_11day

description:
769954
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769956_tumor_Isotype_11day

description:
769956
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769953_spleen_Isotype_11day

description:
769953
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769978_tumor_Isotype_11day

description:
769978
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769950_spleen_Isotype_11day

description:
769950
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769949_spleen_Isotype_11day

description:
769949
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769952_spleen_Isotype_11day

description:
769952
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769947_spleen_Isotype_11day

description:
769947
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769946_spleen_Isotype_11day

description:
769946
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769948_spleen_Isotype_11day

description:
769948
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769945_spleen_Isotype_11day

description:
769945
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769944_spleen_Isotype_11day

description:
769944
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769943_spleen_Isotype_11day

description:
769943
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769941_spleen_Isotype_11day

description:
769941
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769940_spleen_Isotype_11day

description:
769940
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769939_spleen_Isotype_11day

description:
769939
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769942_spleen_Isotype_11day

description:
769942
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769938_spleen_Isotype_11day

description:
769938
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769936_spleen_Isotype_11day

description:
769936
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769937_spleen_Isotype_11day

description:
769937
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769935_spleen_Isotype_11day

description:
769935
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769961_tumor_Isotype_11day

description:
769961
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769934_spleen_Isotype_11day

description:
769934
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769932_spleen_Isotype_11day

description:
769932
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769933_spleen_Isotype_11day

description:
769933
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769930_spleen_Isotype_11day

description:
769930
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769931_spleen_Isotype_11day

description:
769931
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769928_spleen_Isotype_11day

description:
769928
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769929_spleen_Isotype_11day

description:
769929
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769927_spleen_Isotype_11day

description:
769927
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769925_spleen_Isotype_11day

description:
769925
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769926_spleen_Isotype_11day

description:
769926
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769951_spleen_Isotype_11day

description:
769951
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769923_spleen_Isotype_11day

description:
769923
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769922_spleen_Isotype_11day

description:
769922
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769924_spleen_Isotype_11day

description:
769924
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769920_spleen_Isotype_11day

description:
769920
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769918_spleen_Isotype_11day

description:
769918
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769919_spleen_Isotype_11day

description:
769919
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769917_spleen_Isotype_11day

description:
769917
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769915_spleen_Isotype_11day

description:
769915
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769912_spleen_Isotype_11day

description:
769912
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769910_spleen_Isotype_11day

description:
769910
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769909_spleen_Isotype_11day

description:
769909
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769907_spleen_Isotype_11day

description:
769907
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769908_spleen_Isotype_11day

description:
769908
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769906_spleen_Isotype_11day

description:
769906
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769905_spleen_Isotype_11day

description:
769905
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769903_spleen_Isotype_11day

description:
769903
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769904_spleen_Isotype_11day

description:
769904
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769902_spleen_Isotype_11day

description:
769902
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769901_spleen_Isotype_11day

description:
769901
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769899_spleen_Isotype_11day

description:
769899
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769898_spleen_Isotype_11day

description:
769898
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769900_spleen_Isotype_11day

description:
769900
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769897_spleen_Isotype_11day

description:
769897
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769916_spleen_Isotype_11day

description:
769916
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769895_spleen_Isotype_11day

description:
769895
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769921_spleen_Isotype_11day

description:
769921
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769893_spleen_Isotype_11day

description:
769893
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769894_spleen_Isotype_11day

description:
769894
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769892_spleen_Isotype_11day

description:
769892
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769896_spleen_Isotype_11day

description:
769896
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769890_spleen_Isotype_11day

description:
769890
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769891_spleen_Isotype_11day

description:
769891
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769888_spleen_Isotype_11day

description:
769888
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769913_spleen_Isotype_11day

description:
769913
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769889_spleen_Isotype_11day

description:
769889
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769914_spleen_Isotype_11day

description:
769914
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769911_spleen_Isotype_11day

description:
769911
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769887_spleen_Isotype_11day

description:
769887
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769886_spleen_Isotype_11day

description:
769886
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769884_spleen_Isotype_11day

description:
769884
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769883_spleen_Isotype_11day

description:
769883
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769881_spleen_Isotype_11day

description:
769881
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769880_spleen_Isotype_11day

description:
769880
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769879_tumor_Isotype_11day

description:
769879
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769878_tumor_Isotype_11day

description:
769878
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769875_tumor_Isotype_11day

description:
769875
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769877_tumor_Isotype_11day

description:
769877
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769873_tumor_Isotype_11day

description:
769873
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769872_tumor_Isotype_11day

description:
769872
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769871_tumor_Isotype_11day

description:
769871
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769874_tumor_Isotype_11day

description:
769874
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769869_tumor_Isotype_11day

description:
769869
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769870_tumor_Isotype_11day

description:
769870
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769867_tumor_Isotype_11day

description:
769867
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769866_tumor_Isotype_11day

description:
769866
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769863_tumor_Isotype_11day

description:
769863
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769865_tumor_Isotype_11day

description:
769865
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769862_tumor_Isotype_11day

description:
769862
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769864_tumor_Isotype_11day

description:
769864
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769860_tumor_Isotype_11day

description:
769860
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769859_tumor_Isotype_11day

description:
769859
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769885_spleen_Isotype_11day

description:
769885
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769882_spleen_Isotype_11day

description:
769882
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769857_tumor_Isotype_11day

description:
769857
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769858_tumor_Isotype_11day

description:
769858
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769854_tumor_Isotype_11day

description:
769854
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769876_tumor_Isotype_11day

description:
769876
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769851_tumor_Isotype_11day

description:
769851
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769853_tumor_Isotype_11day

description:
769853
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769852_tumor_Isotype_11day

description:
769852
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769855_tumor_Isotype_11day

description:
769855
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769850_tumor_Isotype_11day

description:
769850
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769861_tumor_Isotype_11day

description:
769861
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769849_tumor_Isotype_11day

description:
769849
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769848_tumor_Isotype_11day

description:
769848
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769868_tumor_Isotype_11day

description:
769868
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769847_tumor_Isotype_11day

description:
769847
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769846_tumor_Isotype_11day

description:
769846
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769856_tumor_Isotype_11day

description:
769856
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769833_tumor_Isotype_11day

description:
769833
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769838_tumor_Isotype_11day

description:
769838
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769841_tumor_Isotype_11day

description:
769841
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769842_tumor_Isotype_11day

description:
769842
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769845_tumor_Isotype_11day

description:
769845
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769836_tumor_Isotype_11day

description:
769836
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769839_tumor_Isotype_11day

description:
769839
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769840_tumor_Isotype_11day

description:
769840
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769844_tumor_Isotype_11day

description:
769844
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769834_tumor_Isotype_11day

description:
769834
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769843_tumor_Isotype_11day

description:
769843
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769837_tumor_Isotype_11day

description:
769837
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769835_tumor_Isotype_11day

description:
769835
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769832_tumor_Isotype_11day

description:
769832
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769830_tumor_Isotype_11day

description:
769830
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769831_tumor_Isotype_11day

description:
769831
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769829_tumor_Isotype_11day

description:
769829
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769828_tumor_Isotype_11day

description:
769828
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769822_tumor_Isotype_11day

description:
769822
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769826_tumor_Isotype_11day

description:
769826
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769820_tumor_Isotype_11day

description:
769820
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769825_tumor_Isotype_11day

description:
769825
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769818_tumor_Isotype_11day

description:
769818
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769821_tumor_Isotype_11day

description:
769821
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769827_tumor_Isotype_11day

description:
769827
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769824_tumor_Isotype_11day

description:
769824
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769817_tumor_Isotype_11day

description:
769817
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769819_tumor_Isotype_11day

description:
769819
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769816_tumor_Isotype_11day

description:
769816
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769815_tumor_Isotype_11day

description:
769815
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769813_tumor_Isotype_11day

description:
769813
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769814_tumor_Isotype_11day

description:
769814
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769117_spleen_aGITR+aPD1_11day

description:
769117
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769118_spleen_aGITR+aPD1_11day

description:
769118
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769823_tumor_Isotype_11day

description:
769823
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769116_spleen_aGITR+aPD1_11day

description:
769116
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769808_tumor_Isotype_11day

description:
769808
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769119_spleen_aGITR+aPD1_11day

description:
769119
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769810_tumor_Isotype_11day

description:
769810
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769120_spleen_aGITR+aPD1_11day

description:
769120
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769121_spleen_aGITR+aPD1_11day

description:
769121
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769122_spleen_aGITR+aPD1_11day

description:
769122
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769113_spleen_aGITR+aPD1_11day

description:
769113
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769112_spleen_aGITR+aPD1_11day

description:
769112
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769809_tumor_Isotype_11day

description:
769809
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769812_tumor_Isotype_11day

description:
769812
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769114_spleen_aGITR+aPD1_11day

description:
769114
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769115_spleen_aGITR+aPD1_11day

description:
769115
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769811_tumor_Isotype_11day

description:
769811
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769111_spleen_aGITR+aPD1_11day

description:
769111
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769109_spleen_aGITR+aPD1_11day

description:
769109
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769108_spleen_aGITR+aPD1_11day

description:
769108
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769105_spleen_aGITR+aPD1_11day

description:
769105
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769107_spleen_aGITR+aPD1_11day

description:
769107
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769102_spleen_aGITR+aPD1_11day

description:
769102
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769103_spleen_aGITR+aPD1_11day

description:
769103
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769101_spleen_aGITR+aPD1_11day

description:
769101
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769099_spleen_aGITR+aPD1_11day

description:
769099
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769098_spleen_aGITR+aPD1_11day

description:
769098
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769096_spleen_aGITR+aPD1_11day

description:
769096
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769110_spleen_aGITR+aPD1_11day

description:
769110
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769106_spleen_aGITR+aPD1_11day

description:
769106
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769104_spleen_aGITR+aPD1_11day

description:
769104
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769094_spleen_aGITR+aPD1_11day

description:
769094
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769095_spleen_aGITR+aPD1_11day

description:
769095
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769085_spleen_aGITR+aPD1_11day

description:
769085
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769084_spleen_aGITR+aPD1_11day

description:
769084
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769090_spleen_aGITR+aPD1_11day

description:
769090
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769086_spleen_aGITR+aPD1_11day

description:
769086
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769089_spleen_aGITR+aPD1_11day

description:
769089
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769087_spleen_aGITR+aPD1_11day

description:
769087
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769091_spleen_aGITR+aPD1_11day

description:
769091
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769088_spleen_aGITR+aPD1_11day

description:
769088
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769093_spleen_aGITR+aPD1_11day

description:
769093
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769081_spleen_aGITR+aPD1_11day

description:
769081
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769082_spleen_aGITR+aPD1_11day

description:
769082
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769077_spleen_aGITR+aPD1_11day

description:
769077
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769079_spleen_aGITR+aPD1_11day

description:
769079
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769078_spleen_aGITR+aPD1_11day

description:
769078
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769100_spleen_aGITR+aPD1_11day

description:
769100
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769097_spleen_aGITR+aPD1_11day

description:
769097
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769075_spleen_aGITR+aPD1_11day

description:
769075
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769076_spleen_aGITR+aPD1_11day

description:
769076
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769072_spleen_aGITR+aPD1_11day

description:
769072
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769071_spleen_aGITR+aPD1_11day

description:
769071
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769070_spleen_aGITR+aPD1_11day

description:
769070
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769074_spleen_aGITR+aPD1_11day

description:
769074
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769069_spleen_aGITR+aPD1_11day

description:
769069
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769068_spleen_aGITR+aPD1_11day

description:
769068
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769080_spleen_aGITR+aPD1_11day

description:
769080
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769092_spleen_aGITR+aPD1_11day

description:
769092
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769067_spleen_aGITR+aPD1_11day

description:
769067
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769083_spleen_aGITR+aPD1_11day

description:
769083
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769066_spleen_aGITR+aPD1_11day

description:
769066
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769063_spleen_aGITR+aPD1_11day

description:
769063
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769065_spleen_aGITR+aPD1_11day

description:
769065
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769062_spleen_aGITR+aPD1_11day

description:
769062
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769059_spleen_aGITR+aPD1_11day

description:
769059
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769058_tumor_aGITR+aPD1_11day

description:
769058
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769057_tumor_aGITR+aPD1_11day

description:
769057
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769064_spleen_aGITR+aPD1_11day

description:
769064
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769056_tumor_aGITR+aPD1_11day

description:
769056
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769055_tumor_aGITR+aPD1_11day

description:
769055
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769050_tumor_aGITR+aPD1_11day

description:
769050
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769052_tumor_aGITR+aPD1_11day

description:
769052
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769060_spleen_aGITR+aPD1_11day

description:
769060
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769054_tumor_aGITR+aPD1_11day

description:
769054
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769051_tumor_aGITR+aPD1_11day

description:
769051
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769053_tumor_aGITR+aPD1_11day

description:
769053
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769073_spleen_aGITR+aPD1_11day

description:
769073
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769048_tumor_aGITR+aPD1_11day

description:
769048
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769047_tumor_aGITR+aPD1_11day

description:
769047
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769046_tumor_aGITR+aPD1_11day

description:
769046
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769049_tumor_aGITR+aPD1_11day

description:
769049
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769044_tumor_aGITR+aPD1_11day

description:
769044
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769043_tumor_aGITR+aPD1_11day

description:
769043
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769061_spleen_aGITR+aPD1_11day

description:
769061
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769038_tumor_aGITR+aPD1_11day

description:
769038
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769041_tumor_aGITR+aPD1_11day

description:
769041
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769040_tumor_aGITR+aPD1_11day

description:
769040
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769037_tumor_aGITR+aPD1_11day

description:
769037
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769042_tumor_aGITR+aPD1_11day

description:
769042
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769036_tumor_aGITR+aPD1_11day

description:
769036
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769034_tumor_aGITR+aPD1_11day

description:
769034
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769045_tumor_aGITR+aPD1_11day

description:
769045
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769030_tumor_aGITR+aPD1_11day

description:
769030
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769033_tumor_aGITR+aPD1_11day

description:
769033
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769035_tumor_aGITR+aPD1_11day

description:
769035
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769032_tumor_aGITR+aPD1_11day

description:
769032
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769028_tumor_aGITR+aPD1_11day

description:
769028
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769027_tumor_aGITR+aPD1_11day

description:
769027
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769039_tumor_aGITR+aPD1_11day

description:
769039
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769024_tumor_aGITR+aPD1_11day

description:
769024
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769026_tumor_aGITR+aPD1_11day

description:
769026
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769023_tumor_aGITR+aPD1_11day

description:
769023
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769020_tumor_aGITR+aPD1_11day

description:
769020
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769022_tumor_aGITR+aPD1_11day

description:
769022
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769019_tumor_aGITR+aPD1_11day

description:
769019
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769025_tumor_aGITR+aPD1_11day

description:
769025
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769018_tumor_aGITR+aPD1_11day

description:
769018
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769017_tumor_aGITR+aPD1_11day

description:
769017
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769016_tumor_aGITR+aPD1_11day

description:
769016
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769015_tumor_aGITR+aPD1_11day

description:
769015
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769013_tumor_aGITR+aPD1_11day

description:
769013
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769014_tumor_aGITR+aPD1_11day

description:
769014
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769010_tumor_aGITR+aPD1_11day

description:
769010
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769007_tumor_aGITR+aPD1_11day

description:
769007
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769008_tumor_aGITR+aPD1_11day

description:
769008
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769012_tumor_aGITR+aPD1_11day

description:
769012
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769009_tumor_aGITR+aPD1_11day

description:
769009
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769005_tumor_aGITR+aPD1_11day

description:
769005
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769011_tumor_aGITR+aPD1_11day

description:
769011
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769029_tumor_aGITR+aPD1_11day

description:
769029
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769000_tumor_aGITR+aPD1_11day

description:
769000
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769021_tumor_aGITR+aPD1_11day

description:
769021
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769001_tumor_aGITR+aPD1_11day

description:
769001
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769003_tumor_aGITR+aPD1_11day

description:
769003
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768999_tumor_aGITR+aPD1_11day

description:
768999
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768998_tumor_aGITR+aPD1_11day

description:
768998
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769002_tumor_aGITR+aPD1_11day

description:
769002
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768997_tumor_aGITR+aPD1_11day

description:
768997
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768994_tumor_aGITR+aPD1_11day

description:
768994
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768996_tumor_aGITR+aPD1_11day

description:
768996
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768992_tumor_aGITR+aPD1_11day

description:
768992
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768993_tumor_aGITR+aPD1_11day

description:
768993
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768991_tumor_aGITR+aPD1_11day

description:
768991
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768988_spleen_aGITR+aPD1_11day

description:
768988
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768989_tumor_aGITR+aPD1_11day

description:
768989
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768987_spleen_aGITR+aPD1_11day

description:
768987
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768990_tumor_aGITR+aPD1_11day

description:
768990
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768985_spleen_aGITR+aPD1_11day

description:
768985
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769006_tumor_aGITR+aPD1_11day

description:
769006
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 769004_tumor_aGITR+aPD1_11day

description:
769004
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768986_spleen_aGITR+aPD1_11day

description:
768986
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768981_spleen_aGITR+aPD1_11day

description:
768981
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768983_spleen_aGITR+aPD1_11day

description:
768983
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768984_spleen_aGITR+aPD1_11day

description:
768984
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768979_spleen_aGITR+aPD1_11day

description:
768979
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768982_spleen_aGITR+aPD1_11day

description:
768982
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768978_spleen_aGITR+aPD1_11day

description:
768978
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768980_spleen_aGITR+aPD1_11day

description:
768980
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768974_spleen_aGITR+aPD1_11day

description:
768974
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768973_spleen_aGITR+aPD1_11day

description:
768973
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768972_spleen_aGITR+aPD1_11day

description:
768972
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768975_spleen_aGITR+aPD1_11day

description:
768975
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768977_spleen_aGITR+aPD1_11day

description:
768977
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768971_spleen_aGITR+aPD1_11day

description:
768971
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768970_spleen_aGITR+aPD1_11day

description:
768970
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768976_spleen_aGITR+aPD1_11day

description:
768976
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768968_spleen_aGITR+aPD1_11day

description:
768968
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768969_spleen_aGITR+aPD1_11day

description:
768969
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768995_tumor_aGITR+aPD1_11day

description:
768995
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768967_spleen_aGITR+aPD1_11day

description:
768967
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768966_spleen_aGITR+aPD1_11day

description:
768966
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768965_spleen_aGITR+aPD1_11day

description:
768965
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768963_spleen_aGITR+aPD1_11day

description:
768963
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768961_spleen_aGITR+aPD1_11day

description:
768961
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768962_spleen_aGITR+aPD1_11day

description:
768962
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768960_spleen_aGITR+aPD1_11day

description:
768960
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768958_spleen_aGITR+aPD1_11day

description:
768958
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768959_spleen_aGITR+aPD1_11day

description:
768959
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768956_spleen_aGITR+aPD1_11day

description:
768956
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768957_spleen_aGITR+aPD1_11day

description:
768957
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768953_spleen_aGITR+aPD1_11day

description:
768953
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768955_spleen_aGITR+aPD1_11day

description:
768955
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768954_spleen_aGITR+aPD1_11day

description:
768954
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768950_spleen_aGITR+aPD1_11day

description:
768950
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768949_spleen_aGITR+aPD1_11day

description:
768949
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768951_spleen_aGITR+aPD1_11day

description:
768951
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768948_spleen_aGITR+aPD1_11day

description:
768948
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768952_spleen_aGITR+aPD1_11day

description:
768952
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768946_spleen_aGITR+aPD1_11day

description:
768946
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768940_spleen_aGITR+aPD1_11day

description:
768940
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768944_spleen_aGITR+aPD1_11day

description:
768944
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768945_spleen_aGITR+aPD1_11day

description:
768945
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768942_spleen_aGITR+aPD1_11day

description:
768942
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768939_spleen_aGITR+aPD1_11day

description:
768939
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768947_spleen_aGITR+aPD1_11day

description:
768947
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768964_spleen_aGITR+aPD1_11day

description:
768964
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768938_spleen_aGITR+aPD1_11day

description:
768938
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768937_spleen_aGITR+aPD1_11day

description:
768937
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768936_spleen_aGITR+aPD1_11day

description:
768936
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768934_spleen_aGITR+aPD1_11day

description:
768934
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768933_spleen_aGITR+aPD1_11day

description:
768933
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768932_spleen_aGITR+aPD1_11day

description:
768932
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768935_spleen_aGITR+aPD1_11day

description:
768935
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768930_spleen_aGITR+aPD1_11day

description:
768930
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768931_spleen_aGITR+aPD1_11day

description:
768931
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768929_spleen_aGITR+aPD1_11day

description:
768929
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768928_spleen_aGITR+aPD1_11day

description:
768928
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768927_spleen_aGITR+aPD1_11day

description:
768927
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768926_spleen_aGITR+aPD1_11day

description:
768926
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768923_spleen_aGITR+aPD1_11day

description:
768923
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768924_spleen_aGITR+aPD1_11day

description:
768924
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768925_spleen_aGITR+aPD1_11day

description:
768925
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768943_spleen_aGITR+aPD1_11day

description:
768943
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768941_spleen_aGITR+aPD1_11day

description:
768941
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768922_spleen_aGITR+aPD1_11day

description:
768922
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768921_spleen_aGITR+aPD1_11day

description:
768921
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768919_spleen_aGITR+aPD1_11day

description:
768919
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768917_tumor_aGITR+aPD1_11day

description:
768917
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768920_spleen_aGITR+aPD1_11day

description:
768920
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768918_tumor_aGITR+aPD1_11day

description:
768918
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768916_tumor_aGITR+aPD1_11day

description:
768916
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768915_tumor_aGITR+aPD1_11day

description:
768915
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768913_tumor_aGITR+aPD1_11day

description:
768913
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768910_tumor_aGITR+aPD1_11day

description:
768910
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768912_tumor_aGITR+aPD1_11day

description:
768912
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768911_tumor_aGITR+aPD1_11day

description:
768911
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768906_tumor_aGITR+aPD1_11day

description:
768906
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768909_tumor_aGITR+aPD1_11day

description:
768909
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768908_tumor_aGITR+aPD1_11day

description:
768908
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768907_tumor_aGITR+aPD1_11day

description:
768907
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768905_tumor_aGITR+aPD1_11day

description:
768905
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768903_tumor_aGITR+aPD1_11day

description:
768903
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768901_tumor_aGITR+aPD1_11day

description:
768901
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768899_tumor_aGITR+aPD1_11day

description:
768899
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768904_tumor_aGITR+aPD1_11day

description:
768904
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768902_tumor_aGITR+aPD1_11day

description:
768902
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768900_tumor_aGITR+aPD1_11day

description:
768900
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768914_tumor_aGITR+aPD1_11day

description:
768914
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768897_tumor_aGITR+aPD1_11day

description:
768897
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768893_tumor_aGITR+aPD1_11day

description:
768893
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768894_tumor_aGITR+aPD1_11day

description:
768894
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768890_tumor_aGITR+aPD1_11day

description:
768890
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768895_tumor_aGITR+aPD1_11day

description:
768895
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768888_tumor_aGITR+aPD1_11day

description:
768888
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768898_tumor_aGITR+aPD1_11day

description:
768898
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768889_tumor_aGITR+aPD1_11day

description:
768889
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768891_tumor_aGITR+aPD1_11day

description:
768891
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768886_tumor_aGITR+aPD1_11day

description:
768886
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768885_tumor_aGITR+aPD1_11day

description:
768885
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768883_tumor_aGITR+aPD1_11day

description:
768883
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768881_tumor_aGITR+aPD1_11day

description:
768881
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768878_tumor_aGITR+aPD1_11day

description:
768878
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768877_tumor_aGITR+aPD1_11day

description:
768877
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768875_tumor_aGITR+aPD1_11day

description:
768875
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768876_tumor_aGITR+aPD1_11day

description:
768876
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768896_tumor_aGITR+aPD1_11day

description:
768896
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768879_tumor_aGITR+aPD1_11day

description:
768879
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768874_tumor_aGITR+aPD1_11day

description:
768874
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768873_tumor_aGITR+aPD1_11day

description:
768873
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768892_tumor_aGITR+aPD1_11day

description:
768892
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768872_tumor_aGITR+aPD1_11day

description:
768872
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768870_tumor_aGITR+aPD1_11day

description:
768870
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768887_tumor_aGITR+aPD1_11day

description:
768887
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768869_tumor_aGITR+aPD1_11day

description:
768869
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768867_tumor_aGITR+aPD1_11day

description:
768867
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768866_tumor_aGITR+aPD1_11day

description:
768866
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768865_tumor_aGITR+aPD1_11day

description:
768865
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768884_tumor_aGITR+aPD1_11day

description:
768884
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768864_tumor_aGITR+aPD1_11day

description:
768864
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768868_tumor_aGITR+aPD1_11day

description:
768868
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768862_tumor_aGITR+aPD1_11day

description:
768862
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768882_tumor_aGITR+aPD1_11day

description:
768882
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768861_tumor_aGITR+aPD1_11day

description:
768861
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768860_tumor_aGITR+aPD1_11day

description:
768860
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768858_tumor_aGITR+aPD1_11day

description:
768858
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768859_tumor_aGITR+aPD1_11day

description:
768859
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742126_tumor_aGITR+aPD1_11day

description:
742126
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768880_tumor_aGITR+aPD1_11day

description:
768880
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768857_tumor_aGITR+aPD1_11day

description:
768857
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742114_tumor_aGITR+aPD1_11day

description:
742114
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742115_tumor_aGITR+aPD1_11day

description:
742115
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742112_tumor_aGITR+aPD1_11day

description:
742112
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742111_tumor_aGITR+aPD1_11day

description:
742111
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742113_tumor_aGITR+aPD1_11day

description:
742113
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768871_tumor_aGITR+aPD1_11day

description:
768871
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742108_tumor_aGITR+aPD1_11day

description:
742108
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742106_tumor_aGITR+aPD1_11day

description:
742106
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742105_tumor_aGITR+aPD1_11day

description:
742105
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742101_tumor_aGITR+aPD1_11day

description:
742101
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742098_tumor_aGITR+aPD1_11day

description:
742098
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742097_tumor_aGITR+aPD1_11day

description:
742097
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742099_tumor_aGITR+aPD1_11day

description:
742099
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742100_tumor_aGITR+aPD1_11day

description:
742100
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742095_tumor_aGITR+aPD1_11day

description:
742095
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742096_tumor_aGITR+aPD1_11day

description:
742096
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742093_tumor_aGITR+aPD1_11day

description:
742093
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742087_tumor_aGITR+aPD1_11day

description:
742087
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 768863_tumor_aGITR+aPD1_11day

description:
768863
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742089_tumor_aGITR+aPD1_11day

description:
742089
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742086_tumor_aGITR+aPD1_11day

description:
742086
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742085_tumor_aGITR+aPD1_11day

description:
742085
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742088_tumor_aGITR+aPD1_11day

description:
742088
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742119_tumor_aGITR+aPD1_11day

description:
742119
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742092_tumor_aGITR+aPD1_11day

description:
742092
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742084_tumor_aGITR+aPD1_11day

description:
742084
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742081_tumor_aGITR+aPD1_11day

description:
742081
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742083_tumor_aGITR+aPD1_11day

description:
742083
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742082_tumor_aGITR+aPD1_11day

description:
742082
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742116_tumor_aGITR+aPD1_11day

description:
742116
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742078_tumor_aGITR+aPD1_11day

description:
742078
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742076_tumor_aGITR+aPD1_11day

description:
742076
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742070_tumor_Isotype_11day

description:
742070
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742074_tumor_Isotype_11day

description:
742074
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742065_tumor_Isotype_11day

description:
742065
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742066_tumor_Isotype_11day

description:
742066
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742062_tumor_Isotype_11day

description:
742062
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742057_tumor_Isotype_11day

description:
742057
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742050_tumor_Isotype_11day

description:
742050
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742053_tumor_Isotype_11day

description:
742053
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742043_tumor_Isotype_11day

description:
742043
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742049_tumor_Isotype_11day

description:
742049
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742042_tumor_Isotype_11day

description:
742042
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742040_tumor_Isotype_11day

description:
742040
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742055_tumor_Isotype_11day

description:
742055
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742039_tumor_Isotype_11day

description:
742039
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742069_tumor_Isotype_11day

description:
742069
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742032_tumor_Isotype_11day

description:
742032
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742029_tumor_Isotype_11day

description:
742029
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742027_tumor_Isotype_11day

description:
742027
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742034_tumor_Isotype_11day

description:
742034
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742025_tumor_Isotype_11day

description:
742025
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742021_tumor_Isotype_11day

description:
742021
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742024_tumor_Isotype_11day

description:
742024
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742031_tumor_Isotype_11day

description:
742031
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742079_tumor_aGITR+aPD1_11day

description:
742079
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742038_tumor_Isotype_11day

description:
742038
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: 742035_tumor_Isotype_11day

description:
742035
Single cell RNA-seq
processed data file: Expression-in-FPKM.txt


title: miRNA_C2

status: Public on Oct 24 2018

city: shenzhen

first: Guanyu

last: Ji

state: GuangDong

address: 14th of middle jinxiu road

department: R&D

country: China

institute: GENEDOHEALTH

description:
C2
miRNA
processed data file: miRNA_Expression.txt

data_processing:
Illumina Casava1.7 software used for basecalling.
Clean reads were obtained after trimming the 5' and 3' adaptors and eliminating contaminants and inadequate (<18 nt) and low-quality reads.
The trimmed sequences were compared against known miRNAs released from miRBase (Release 22), using the Bowtie algorithm.
The expression of each miRNA was calculated as transcripts per million reads (TPM), and log 2 fold changes (log 2 FC) between the TGF-β1-treated and control groups were calculated based on 3 normalised read counts.
Genome_build: miRNA information can be downloaded from http://www.mirbase.org/
Supplementary_files_format_and_content: miRNA_Expression.txt: Tab-delimited text file includes TPM value information of mouse miRNA.

source_name: primary mesangial cells

extract_protocol:
Total RNA was isolated from the mesangial cells using TRIzol® (Invitrogen) per the manufacturer’s instructions. The samples were collected from each group (TGF-β1 and control cells) in triplicate and RNA sequencing (RNA-Seq) and miRNA sequencing (miRNA-Seq) were performed using the Illumina HiSeq™ 2000 sequencing system (BeiJing Genome Institute (BGI) Inc., Shenzhen, China). An analysis of differential RNA (DE-genes) and miRNA (DE-miRNA) expression between samples from TGF-β1-treated and control cells was then conducted.
miRNA libraries were prepared for sequencing using standard Illumina protocols.

treatment_protocol: Mouse primary mesangial cells (provided by Professor Joseph Forbes, University of Queensland, Australia) (PMID 29449307) were cultured in Dulbecco's Modified Eagle Medium with the addition of high glucose (25.5 mM) containing 20% foetal bovine serum (GIBCO). The cells used in these experiments were used between passages 3 and 6 and were treated with 10 ng/ml TGF-β1 for 72 hours.

value: primary mesangial cells

value: Control


title: RNA_T2

description:
T2
processed data file: RNA-seq.rpkm.txt

data_processing:
Illumina Casava1.7 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm9 whole genome using tophat v2.0.11 with parameters -r 200 -p 4 -N 7 --read-gap-langth 10
Fragments Per Kilobase of exon per Megabase of library size (FPKM) were calculated using a protocol from Chepelev et al., Nucleic Acids Research, 2009. In short, exons from all isoforms of a gene were merged to create one meta-transcript. The number of reads falling in the exons of this meta-transcript were counted and normalized by the size of the meta-transcript and by the size of the library.
Genome_build: mm9 (MGSCv37); Genome information can be downloaded from ftp://hgdownload.cse.ucsc.edu/goldenPath/mm9/chromosomes/
Supplementary_files_format_and_content: RNA-seq.fpkm.txt: Tab-delimited text file includes FPKM value information of mm9 mouse.

extract_protocol:
Total RNA was isolated from the mesangial cells using TRIzol® (Invitrogen) per the manufacturer’s instructions. The samples were collected from each group (TGF-β1 and control cells) in triplicate and RNA sequencing (RNA-Seq) and miRNA sequencing (miRNA-Seq) were performed using the Illumina HiSeq™ 2000 sequencing system (BeiJing Genome Institute (BGI) Inc., Shenzhen, China). An analysis of differential RNA (DE-genes) and miRNA (DE-miRNA) expression between samples from TGF-β1-treated and control cells was then conducted.
RNA libraries were prepared for sequencing using standard Illumina protocols.


title: miRNA_T2

description:
T2
miRNA
processed data file: miRNA_Expression.txt


title: RNA_C3

description:
C3
processed data file: RNA-seq.rpkm.txt


title: miRNA_T3

description:
T3
miRNA
processed data file: miRNA_Expression.txt


title: miRNA_T1

description:
T1
miRNA
processed data file: miRNA_Expression.txt


title: miRNA_C3

description:
C3
miRNA
processed data file: miRNA_Expression.txt


title: RNA_T1

description:
T1
processed data file: RNA-seq.rpkm.txt


title: RNA_T3

description:
T3
processed data file: RNA-seq.rpkm.txt


title: ChIP_T3-H3K27Me3

library_source: genomic

data_processing:
Illumina Casava1.7 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm9 whole genome using bwa with default parameters.
Enrich information of peaks was analysed using MACS2.
Genome_build: mm9 (MGSCv37); Genome information can be downloaded from ftp://hgdownload.cse.ucsc.edu/goldenPath/mm9/chromosomes/
Supplementary_files_format_and_content: *_peaks.txt: Tab-delimited text files include peaks information of mm9 mouse.

molecule: genomic DNA

extract_protocol:
For ChIP-seq, genomic DNA (gDNA) was extracted from cells using a DNeasy Blood and Tissue kit (Qiagen, Chatsworth, CA, USA) according to the manufacturer's instructions. DNA sonication, Illumina's paired-end library preparation and methylated DNA immunoprecipitation were performed as previously described (Feber et al., 2011). Briefly, five micrograms of gDNA were randomly sheared to a median fragment size of 200 bp using a Covaris S220. Sonicated DNAs were subjected to library preparation according to Illumina Paired End libraries preparation protocols. Then methylated DNA immunoprecipitation was performed using the Methylated-DNA IP kit (Zymo Research; Orange, CA, USA).
ChIP libraries were prepared for sequencing using standard Illumina protocols.

tag: chip antibody


title: RNA_C1

description:
C1
processed data file: RNA-seq.rpkm.txt


title: RNA_C2

description:
C2
processed data file: RNA-seq.rpkm.txt


title: ChIP_T2-H3K27Me3


title: ChIP_C2-H3K27Me3


title: ChIP_C3-H3K27Me3


title: ChIP_C1-H3K27Me3


title: MeDIP.T3

extract_protocol:
For MeDIP-seq, genomic DNA (gDNA) was extracted from cells using a DNeasy Blood and Tissue kit (Qiagen, Chatsworth, CA, USA) according to the manufacturer's instructions. DNA sonication, Illumina's paired-end library preparation and methylated DNA immunoprecipitation were performed as previously described (Feber et al., 2011). Briefly, five micrograms of gDNA were randomly sheared to a median fragment size of 200 bp using a Covaris S220. Sonicated DNAs were subjected to library preparation according to Illumina Paired End libraries preparation protocols. Then methylated DNA immunoprecipitation was performed using the Methylated-DNA IP kit (Zymo Research; Orange, CA, USA).
MeDIP libraries were prepared for sequencing using standard Illumina protocols.


title: MeDIP.T2


title: MeDIP.T1


title: MeDIP.C3


title: MeDIP.C1


title: miRNA_C1

description:
C1
miRNA
processed data file: miRNA_Expression.txt


title: Control_2

status: Public on Oct 20 2018

city: Jena

first: Marco

last: Groth

address: Beutenbergstraße 11

department: Core Facility - Next Generation Sequencing

country: Germany

institute: Leibniz Institute on Aging - FLI

data_processing:
Illumina's bcl2fastq  v1.8.4 software used for extraction of FASTQ files
Reads were mapped using Tophat2 (v2.1.0; parameter: -T -x 1 --no-coverage-search --no-novel-juncs --no-novel-indels) to the human genome (ensembl GRCh38)  taken the ensembl annotation (GRCh38.91) into account
Counting of reads per gene was done featureCounts (v1.5.0; parameter: -s 2)
Genome_build: ensembl: GRCH38.91
Supplementary_files_format_and_content: Excel file contains raw counts, RPMs and RPKMs

organism: Homo sapiens

source_name: cell line

extract_protocol:
Zymo Quick-RNA Mini Kit
Preparation of libraries was done using Illumina’s TruSeq stranded mRNA kit following the manufacturer’s instruction.

value: hTert immortalized forearm fibroblasts

tag: cell line

value: Non-targeting siRNAs


title: Control_1


title: MCM7_2

value: Pool of four siRNAs for MCM7


title: Control_3


title: MCM7_3


title: MCM7_1


title: CTRL_2

data_processing:
Illumina's bcl2fastq  v1.8.4 software used for extraction of FASTQ files
Reads were mapped using Tophat2 (v2.1.0; parameter: -T -x 1 --no-coverage-search --no-novel-juncs --no-novel-indels) to the human genome (ensembl GRCh38)  taken the ensembl annotation (GRCh38.83) into account
Counting of reads per gene was done featureCounts (v1.4.6-p4; parameter: -s 2)
Genome_build: ensembl: GRCH38.83
Supplementary_files_format_and_content: Excel file contains raw counts, RPMs and RPKMs

extract_protocol:
Qiagen RNeasy with on-column DNAse digest
Preparation of libraries was done using Illumina’s TruSeq stranded mRNA kit following the manufacturer’s instruction.


title: MCM2_1

value: Pool of four siRNAs for MCM2


title: CRTL_1


title: CTRL_3


title: MCM2_3


title: MCM2_2


title: SJ-1

status: Public on Oct 19 2018

city: Boston

first: Adam

last: Labadorf

state: MA

address: 72 East Concord Street E301

department: Neurology

institute: Boston University Medical School

description:
SJ
ribo-depleted RNA

data_processing:
Bases were called with the Illumina CASAVA 1.7 pipeline
Read library quality was assessed using fastqc (FastQC 2016) and multiqc (Ewels 2016) packages.
Illumina adapters were removed (R1: TACACTCTTTCCCTACACGACGCTCTTCCGATCT, R2: GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT) and leading and trailing low quality bases (below quality 30) were trimmed using Trimmomatic (Bolger 2014).  Reads which were less than 36 bases long after these steps were dropped.
The surviving reads were then mapped to the hg38 human reference genome using the STAR aligner (Dobin 2013) with GENCODE v27 annotations (Harrow 2012). To more accurately quantify the reads mapped to novel splice junctions, 2-pass mapping mode was invoked in STAR.
The fused-read junctions with statistics of chimeric alignments were filtered to eliminate chimeras with the mitochondrial genome, keeping only the canonical junctions with repeat length less than 5. Chimeric read alignment from the each of the three replicates were combined, and fusions with fewer than 10 supporting reads were filtered out.
To visualize the fusion between different chromosomes, a circos plot was made using the package OmicCircos(Hu et al., 2014).
Genome_build: hg38
Supplementary_files_format_and_content: STAR Chimeric output junction file for G292 containing fusion reads, columns are according to STAR version 2.6.0a documentation section 5.4

source_name: in vitro cells

extract_protocol:
QIAzol, Qiagen Rneasy kit
Kapa RNA HyperPrep kit with Riboerase

value: SJ

tag: alt status

value: ALT-


title: SA-3

description:
SA
ribo-depleted RNA

value: SA

value: ALT+


title: U2-3

description:
U2
ribo-depleted RNA


title: U2-1

description:
U2
ribo-depleted RNA


title: SA-1

description:
SA
ribo-depleted RNA


title: RF-SJ-2

description:
SJ
ribo-depleted RNA


title: ChIP_T1-H3K27Me3


title: SJ-3

description:
SJ
ribo-depleted RNA


title: MeDIP.C2


title: RF-SA-2

description:
SA
ribo-depleted RNA


title: RF-NY-2

description:
NY
ribo-depleted RNA

value: NY


title: RF-MG-2

description:
MG
ribo-depleted RNA

value: MG


title: RF-HOS-2

description:
HOS
ribo-depleted RNA

value: HOS


title: RF-G2-2

description:
G2
ribo-depleted RNA


title: UO9-1

description:
UO9
ribo-depleted RNA


title: UO9-3

description:
UO9
ribo-depleted RNA


title: RF-78-2

description:
78
ribo-depleted RNA


title: RF-72-2

description:
72
ribo-depleted RNA


title: RF-3N1-2

description:
3N1
ribo-depleted RNA


title: NY-3

description:
NY
ribo-depleted RNA


title: RF-UO9-2

description:
UO9
ribo-depleted RNA


title: RF-U2-2

description:
U2
ribo-depleted RNA


title: HOS-3

description:
HOS
ribo-depleted RNA


title: NOS-3

description:
NOS
ribo-depleted RNA

value: NOS


title: NOS-1

description:
NOS
ribo-depleted RNA


title: MG-1

description:
MG
ribo-depleted RNA


title: NY-1

description:
NY
ribo-depleted RNA


title: G2-3

description:
G2
ribo-depleted RNA


title: HOS-1

description:
HOS
ribo-depleted RNA


title: 78-3

description:
78
ribo-depleted RNA


title: FOB-3

description:
FOB
ribo-depleted RNA

value: FOB


title: FOB-1

description:
FOB
ribo-depleted RNA


title: RF-NOS-2

description:
NOS
ribo-depleted RNA


title: 3N1-3

description:
3N1
ribo-depleted RNA


title: 72-1

description:
72
ribo-depleted RNA


title: 78-1

description:
78
ribo-depleted RNA


title: G2-1

description:
G2
ribo-depleted RNA


title: 3N1-1

description:
3N1
ribo-depleted RNA


title: G1_PBS_ControlASO_50_Kidney_I1

status: Public on Oct 16 2018

city: Carlsbad

first: Sagar

middle: S

last: Damle

state: CA

address: 2855 Gazelle Ct

department: Functional Genomics

institute: Ionis Pharmaceuticals

data_processing:
Demultiplexing and base-calling was performed by Illumina bcl2fastq2 software (version 2.17.1.14).
Reads were associated to transcripts using a quasi-mapping based mode of Salmon (version 0.7.2).
Gene-level TPM was computed by normalizing number of reads mapped per transcript by number of mapped reads, using gene models from mouse Ensembl build 81.
Genome_build: GRCm38.p4
Supplementary_files_format_and_content: *txt: Comma-separated files containing gene symbol and TPM for genes.

source_name: G1 Kidney

extract_protocol:
Tissues were homogenized in Guanidine Isothiocyanate solution (Life Technologies) containing 8% β-mercaptoethanol (Sigma Aldrich) and total RNA was isolated using RNeasy 96 Kits (Qiagen) according to the manufacturer’s recommendations.
Digital gene expression (DGE) was performed by sequencing fragment libraries from purified total RNA as described previously (Patro et al., Nat Methods, 2017) using the QuantSeq 3' mRNA-Seq Library Prep Kit from Lexogen.

treatment_protocol: APOL1 G0 and G1 transgenic mice were dosed with PBS (vehicle), 50 mg/kg control ASO (non-targeting ASO of the same chemistry as targeting ASO) or 50 mg/kg APOL1 ASO once/week for 4 weeks. One day after the last ASO dose, cohorts were divided and half were challenged with PBS and half were challenged with IFNgamma. Kidney and Liver tissues were harvested 48 hours after challenge for analysis.

tag: genotype/variation

value: Apol1 G1 transgenic

value: Kidney

tag: aso

value: Control ASO

tag: concentration

value: 50 mg/kg

tag: stimulation

value: PBS


title: RF-FOB-2

description:
FOB
ribo-depleted RNA


title: 72-3

description:
72
ribo-depleted RNA


title: G0_PBS_ControlASO_50_Kidney_C1

source_name: G0 Kidney

value: Apol1 G0 transgenic


title: G0_PBS_PBS_0_Kidney_A2

value: 0 mg/kg


title: G0_IFNgamma_PBS_0_Kidney_B1

value: IFNgamma


title: G0_IFNgamma_ControlASO_50_Kidney_D4


title: G0_PBS_APOL1ASO_50_Liver_E3

source_name: G0 Liver

value: Liver

value: APOL1 ASO


title: G1_IFNgamma_ControlASO_50_Kidney_J3


title: MG-3

description:
MG
ribo-depleted RNA

value: ALT-


title: G0_PBS_PBS_0_Liver_A3


title: G1_IFNgamma_PBS_0_Kidney_H1


title: G1_PBS_ControlASO_50_Liver_I1

source_name: G1 Liver


title: G1_IFNgamma_APOL1ASO_50_Kidney_L3


title: G0_IFNgamma_APOL1ASO_50_Liver_F4


title: G0_IFNgamma_ControlASO_50_Kidney_D2


title: G0_IFNgamma_APOL1ASO_50_Liver_F3


title: G1_PBS_PBS_0_Liver_G3


title: G1_PBS_ControlASO_50_Kidney_K1


title: G1_PBS_APOL1ASO_50_Kidney_K3


title: G0_PBS_PBS_0_Liver_A1


title: G1_IFNgamma_ControlASO_50_Liver_J1


title: G0_PBS_APOL1ASO_50_Kidney_E3


title: G0_PBS_ControlASO_50_Kidney_C2


title: G0_PBS_APOL1ASO_50_Kidney_E4


title: G1_PBS_PBS_0_Kidney_G1


title: G0_PBS_PBS_0_Liver_A4


title: G1_IFNgamma_PBS_0_Liver_H3


title: G0_IFNgamma_PBS_0_Liver_B4


title: G0_IFNgamma_PBS_0_Liver_B2


title: G0_IFNgamma_APOL1ASO_50_Liver_F2


title: G1_IFNgamma_PBS_0_Kidney_H3


title: G1_PBS_APOL1ASO_50_Liver_K2


title: G0_PBS_PBS_0_Kidney_A3


title: G1_IFNgamma_APOL1ASO_50_Liver_L3


title: G0_PBS_ControlASO_50_Kidney_C4


title: G1_IFNgamma_ControlASO_50_Liver_J4


title: G0_IFNgamma_ControlASO_50_Liver_D4


title: G1_PBS_ControlASO_50_Kidney_I3


title: G1_PBS_PBS_0_Kidney_G2


title: G1_PBS_PBS_0_Liver_G4


title: G0_IFNgamma_APOL1ASO_50_Kidney_F1


title: G1_PBS_ControlASO_50_Liver_K1


title: G0_IFNgamma_ControlASO_50_Kidney_D3


title: G0_IFNgamma_ControlASO_50_Liver_D2


title: G0_PBS_PBS_0_Kidney_A4


title: G0_PBS_APOL1ASO_50_Liver_E2


title: G0_IFNgamma_APOL1ASO_50_Kidney_F3


title: G0_PBS_APOL1ASO_50_Kidney_E1


title: G0_PBS_APOL1ASO_50_Liver_E1


title: G1_IFNgamma_PBS_0_Liver_H1


title: G0_IFNgamma_ControlASO_50_Liver_D1


title: G0_PBS_ControlASO_50_Liver_C4


title: G0_IFNgamma_ControlASO_50_Kidney_D1


title: G0_PBS_ControlASO_50_Liver_C1


title: G1_PBS_PBS_0_Liver_G1


title: G0_IFNgamma_APOL1ASO_50_Kidney_F4


title: G0_PBS_ControlASO_50_Liver_C3


title: G1_IFNgamma_ControlASO_50_Liver_J3


title: G0_IFNgamma_APOL1ASO_50_Kidney_F2


title: G1_IFNgamma_PBS_0_Kidney_H2


title: G0_PBS_PBS_0_Liver_A2


title: G1_IFNgamma_APOL1ASO_50_Liver_L4


title: G0_IFNgamma_PBS_0_Kidney_B4


title: G1_PBS_ControlASO_50_Liver_I3


title: G0_IFNgamma_APOL1ASO_50_Liver_F1


title: G0_PBS_ControlASO_50_Liver_C2


title: G1_IFNgamma_APOL1ASO_50_Liver_L2


title: G0_PBS_APOL1ASO_50_Liver_E4


title: G1_PBS_APOL1ASO_50_Liver_K3


title: G1_PBS_APOL1ASO_50_Kidney_K4


title: G1_PBS_APOL1ASO_50_Liver_K4


title: G1_IFNgamma_APOL1ASO_50_Kidney_L1


title: G1_IFNgamma_APOL1ASO_50_Kidney_L4


title: G1_IFNgamma_PBS_0_Liver_H4


title: G0_IFNgamma_PBS_0_Liver_B3


title: G1_IFNgamma_ControlASO_50_Kidney_J1


title: G0_PBS_ControlASO_50_Kidney_C3


title: G1_IFNgamma_APOL1ASO_50_Kidney_L2


title: G0_IFNgamma_ControlASO_50_Liver_D3


title: G1_IFNgamma_PBS_0_Kidney_H4


title: G1_IFNgamma_APOL1ASO_50_Liver_L1


title: G0_IFNgamma_PBS_0_Kidney_B2


title: G1_PBS_ControlASO_50_Kidney_I2


title: G1_IFNgamma_PBS_0_Liver_H2


title: G1_IFNgamma_ControlASO_50_Kidney_J2


title: G1_PBS_PBS_0_Kidney_G4


title: G0_PBS_PBS_0_Kidney_A1


title: G0_PBS_APOL1ASO_50_Kidney_E2


title: G0_IFNgamma_PBS_0_Kidney_B3


title: G1_IFNgamma_ControlASO_50_Liver_J2


title: G1_PBS_ControlASO_50_Liver_I2


title: G1_PBS_PBS_0_Liver_G2


title: G1_PBS_APOL1ASO_50_Kidney_K2


title: G0_IFNgamma_PBS_0_Liver_B1


title: G1_PBS_PBS_0_Kidney_G3


title: G1_IFNgamma_ControlASO_50_Kidney_J4


title: Mouse E12.5 Tgfbr2_Knockout Tgfbr2 Mandible Proximal Replicate 3

status: Public on Oct 13 2018

type: RNA

city: Los Angeles

first: Michael

last: Kesling

address: 2250 Alcazar Street

institute: University of Southern California

description: Gene Expression

hyb_protocol: Following fragmentation, 12 µg of cRNA was hybridized for 16hr on Affymetrix Mouse 430_2 (gene version) as recommended by the manufacturer.

scan_protocol: GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G3000A.

data_processing: The probe level data was summarized to gene level and was analyzed with PGS 6.6. RMA (Robust Multi array average) normalization was used.

label: biotin

source_name: mouse embryo stage E12.5

label_protocol: Starting from 5 µg total RNA, labeled cRNA was prepared using the Qiagen Microarray cDNA Synthesis, Microarray RNA Target Synthesis (T7) and Microarray Target Purification Kit, according to the manufacturer's instructions.

extract_protocol: RNA was extracted from tissues using RNeasy kit (Qiagen Valenica, CA).

value: Mandible

tag: tissue compartment

value: Proximal

value: Tgfbr2 Knockout

tag: developmental stage


title: Input RNA

status: Public on Aug 18 2018

city: Hefei

first: Pengfei

address: 443 Huang-Shan Road

department: School of Life Sciences

institute: University of Science and Technology of China

description:
input
processed data file: CLIP-seq_Gene_Expression.xlsx

data_processing:
Solexa pipeline version 1.8 (Off-Line Base Caller software, version 1.8) software was used to process image and identificate base.
Cutadapt software was used to clip linker sequences.
FastQC was used to conduct quality assessment of reads.
Hisat2 was used to map reads onto the reference genome.
StringTie was used as an assembler of RNA-Seq alignments into potential transcripts.
Ballgown was used to calculate the FPKM and expression levels of genes and transcripts.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: CLIP-seq_Gene_Expression.xlsx: Excel file containing gene information, count and FPKM of genes in input and ip samples.

source_name: immortalized murine bone marrow-derived macrophages (iBMDMs)

growth_protocol: iBMDMs were cultured in DMEM (Dulbecco's modified Eagle's medium) containing 10% fetal bovine serum.

extract_protocol:
To isolate protein-associated RNAs from the eluted immunocomplexes, samples were treated with proteinase K, and RNAs were extracted by phenol/chloroform.
Total RNA was enriched by oligo dT to remove rRNA. Libraries were prepared according to Illumina's instructions accompanying the KAPA Stranded RNA-Seq Library Prep Kit (Illumina).

treatment_protocol: Two 10 cm2 dishes of iBMDMs were primed with LPS, and then stimulated with nigericin. The activated cells were washed three times with cold PBS and irradiated at 200 mJ/cm2 at 254 nm in HL-2000 HybriLinkerTM UV Crosslinker. Cells were collected and resuspended in 1 ml CLIP buffer. Cell lysates were precleared with protein A/G beads (Pierce) before they were incubated with protein A/G beads coated with the indicated antibodies at 4°C for 3 hr. After extensive washing, the bead-bound immunocomplexes were eluted using elution buffer (50 mM Tris [pH 8.0], 1% SDS, and 10 mM EDTA) at 65°C for 10 min.

tag: antibody


title: sexual_stage5 rep3_WT

status: Public on Aug 16 2018

city: East Lansing

first: Wonyong

last: Kim

state: Michigan

address: 612 Wilson Road, Room 166

department: Plant Biology

institute: Michigan State University

data_processing:
Sequencing was performed on an Illumina HiSeq 2500 High Output flow cell (v4) using Illumina HiSeq SBS reagents (v4) in a 1x50bp paired end format. Base calling was done by Illumina Real Time Analysis (RTA) v1.18.64 and output of RTA was demultiplexed and converted to FastQ format with Illumina Bcl2fastq v1.8.4.
Poor quality reads were trimmed and/or filtered out, and adapters and homopolymers were trimmed from raw reads, using the ngsShoRT program v2.2, with parameters -lqs 12 -tera_avg 20 -5a_mp 98 -rmHP_ml 10
Filtered reads were mapped to the repeat-masked genome (Ensembl version 32), using the HISAT2 program v2.0.4, with default parameters
De novo transcript assembly was performed using the StringTie program v1.3.0, with default parameters
Read counts for gene loci in the de novo annotations were calculated using the htseq-count program v0.6.1. Gene expression levels in counts-per-million (CPM) value were computed and normalized by effective library size estimated by trimmed mean of M values, using the edgeR R package v3.14.0.
Genome_build: Fusarium graminearum str. PH-1 Ensembl Genomes 32
Supplementary_files_format_and_content: tab-delimited text file include a matrix of log2-CPM values for all samples and the associated GTF file

organism: Fusarium graminearum

source_name: sexual_stage5 WT

extract_protocol:
Fungal hyphae were scraped out from carrot agar culture and frozen in liquid nitrogen, and total RNA was isolated using the standard Trizol extraction protocol with additional extraction steps.
The KAPA Stranded RNA-Seq Library Preparation Kit was used with 2 ug of total RNA for the construction of cDNA libraries.
Stranded RNA-seq with poly-A captured RNA samples

tag: strain

value: ascospores

tag: genotype

value: wild-type


title: sexual_stage5 rep2_WT


title: sexual_stage4 rep2_WT

source_name: sexual_stage4 WT

value: asci


title: sexual_stage4 rep3_WT


title: NLRP3 CLIP RNA

description:
ip
processed data file: CLIP-seq_Gene_Expression.xlsx

tag: strain/background

value: immortalized murine bone marrow-derived macrophages

value: NLRP3 (D4D8T) Rabbit mAb (Cell Signaling Technology, #15101S)


title: CellPOP_sample_O1 to CellPOP_sample_O24

status: Public on Aug 19 2018

city: Melbourne

first: Shian

last: Su

state: Victoria

address: 1G Royal Parade

department: Molecular Medicine

country: Australia

institute: Walter and Eliza Hall Institute of Medical Research

data_processing:
gene counting matrix generated using scPipe 1.3.0
reads were aligned using Rsubread 1.29.6
Genome_build: ENSEMBL Homo_sapiens.GRCh38.88
Supplementary_files_format_and_content: gene counting matrix, rows repsent genes and each column is a well

molecule: polyA RNA

source_name: Lung adenocarcinoma

growth_protocol: The human lung adenocarcinoma cell lines H2228, H1975 and HCC827 were retrieved from ATCC (https://www.atcc.org/) and cultured in Roswell Park Memorial Institute (RPMI) 1640 medium with 10% fetal calf serum (FCS) and 1% Penicillin-Streptomycin.  The cells were grown independently at 37C  with 5% carbon dioxide until near 100% confluency.

extract_protocol:
For the three cell lines, cells were dissociated into single cell suspensions in FACS buffer and sorted for 9-cell-mixture and single cell experiment (see below for sorting strategy).   The remaining cells were centrifuged and frozen at -80C for later RNA extraction. The RNA was then extracted using a Qiagen RNA miniprep kit. The amount of RNA was quantified using both Invitrogen Qubit fluorometric quantitation and an Agilent 4200 bioanalyzer to get an accurate estimation. The extracted RNA was then diluted to 60 ng\ul and then mixed in different proportions, according to the study design. The different mixtures were further diluted to create an RNA series that ranged from 3.75pg to 30pg that was dispensed into CEL-seq2 and SORT-seq primer plates using a Nanodrop II dispenser. Prepared RNA mixture plates were sealed and immediately frozen upside down at -80C.
For CEL-seq2, Single cells were flow sorted into chilled 384-well PCR plates containing 1.2ul of primer/ERCC mix using a BD FACSAria III flow cytometer. Sorted plates were sealed and immediately frozen upside down at -80C. Then these plates, together with the mRNA mixture plates, were taken from -80C and processed using an adapted Cel-Seq2 protocol with the following variations. The second strand synthesis was performed using NEBNext Second Strand Synthesis module in a final reaction volume of 8 ul and NucleoMag NGS Clean-up and Size select magnetic beads were used for all DNA purification and size selection steps. For the 9-cell-mixture plates, clean up of the PCR product was performed with 2X0.7-0.9 bead/DNA ratio. For the single cell and mRNA mixture plates, two different clean up ratios for the PCR product were used (0.8 followed by 0.9). The choice of clean-up ratio was optimized from the QC results of the 9-cell-mixture data and the SORT-seq protocols.

value: lung adenocarcinoma cell line


title: sexual_stage4 rep1_WT

tag: tissue


title: Cellmix3_sample_A3  to Cellmix3_sample_P20 SC3

treatment_protocol: For the three cell lines, cells were dissociated into single cell suspensions in FACS buffer and sorted for 9-cell-mixture and single cell experiment (see below for sorting strategy).   The remaining cells were centrifuged and frozen at -80C for later RNA extraction. The RNA was then extracted using a Qiagen RNA miniprep kit. The amount of RNA was quantified using both Invitrogen Qubit fluorometric quantitation and an Agilent 4200 bioanalyzer to get an accurate estimation. The extracted RNA was then diluted to 60 ng\ul and then mixed in different proportions, according to the study design. The different mixtures were further diluted to create an RNA series that ranged from 3.75pg to 30pg that was dispensed into CEL-seq2 and SORT-seq primer plates using a Nanodrop II dispenser. Prepared RNA mixture plates were sealed and immediately frozen upside down at -80C.

tag: cell type


title: Cellmix4_sample_A3 to Cellmix4_sample_P20 SC4


title: Cellmix2_sample_A3  to Cellmix2_sample_P20 SC2


title: sexual_stage3 rep3_WT

source_name: sexual_stage3 WT

value: paraphyses


title: Uninjured Kidney, 014

city: Ann Arbor

first: Greg

last: Dressler

state: MI

address: 109 Zina Pitcher Drive

department: Pathology

institute: University of Michigan

hyb_protocol: Following Labeling procedure, 3.75 ug of biotinylated cDNA were hybridized at 45C on Affymetrix Mouse HT MG-430 PM arrays, and were washed and stained using the Affymetrix Gene Atlas system (software version 1.0.4.267).

scan_protocol: Arrays were scanned using the Affymetrix Gene Atlas system (software version 1.0.4.267).

data_processing: Data was analyzed using the limma and affy Bioconductor packages implemented in the R-statistical environment version 3.3.0. RMA was used to fit log2 transformed expression values.

source_name: Kidney

label_protocol: cDNA were prepared according to the Nugen Ovation PicoSL WTA System V2 kit protocol from 20 ng total RNA (Ovation PicoSL WTA System V2 Manual, P/N M01226 v4). Subsequently, biotinylated cDNA were prepared according to the Nugen Encore Biotin Module from 3.75 ug of cDNA (Encore Biotin Module Manual, P/N M01111 v6).

extract_protocol: RNA was isolated from FACS sorted fibroblasts with Trizol according to the manufacturer's protocol.

treatment_protocol: Adult mice were subjected to Folic Acid induced Acute Kidney Injury and cells isolated at 3, 7, and 14 days post injury. Adults were subjected to unilateral ureteral obstruction (UUO) and cells isolated after 14 days.

value: PDGFra-positive fibroblasts

tag: treatment

value: Uninjured


title: Folic Acid 7 days, 005

value: Folic acid-induced acute kidney injury

tag: time

value: 7 days


title: Uninjured Kidney, 015


title: UUO 14 days, 012

value: Unilateral ureteral obstruction (UUO)

value: 14 days


title: Folic Acid 7 days, 004


title: Cellmix1_sample_A3  to Cellmix1_sample_P20 SC1


title: Folic Acid 14 days, 008


title: Uninjured Kidney, 013


title: Folic Acid 14 days, 007