title: C35P3-3 N14

status: Public on Jan 31 2019

type: SRA

city: Potsdam

first: Ellen

last: Zuther

address: Am Muehlenberg 1

department: Transcript Profiling

country: Germany

institute: MPI of Molecular Plant Physiology

description: data in column AH

library_source: transcriptomic

data_processing:
Adapter trimming and removal of reads < 80 bp with flexbar 2.5
Mapping against genome reference TAIR10.31 with bwa 0.7.13 (-samse), CLC 9 (default and provided references), RSEM 1.2.30 (--fragment-length-mean 150 and --fragment-length-sd 25),  STAR 2.5.2a (--outSAMtype BAM SortedByCoordinate, --outFilterMultimapNmax 20, --alignSJDBoverhangMin 8, --outSAMunmapped Within, --quantMode TranscriptomeSAM GeneCounts) and tophat 2.1.1 (--read-edit-dist 7 and -N 7) or transcriptome reference with kallisto 0.42.5 (--single, -l 150 and -s 25) and salmon 0.6.0 (--type quasi -k 31, –r, –s, -u, -t and -l SF)
Create count tables based on natively generated output. For bwa samtools 1.3 idxstats and for tophat HTSeq 0.7.2 were used.
Genome_build: TAIR10.31
Supplementary_files_format_and_content: tab-delimeted .txt files with raw counts of sequencing reads for the features of interest

molecule: total RNA

organism: Arabidopsis thaliana

source_name: pool of 5 replicates with 4 rosettes

growth_protocol: Two Arabidopsis thaliana accessions, Col-0 and N14, previously characterized regarding their freezing tolerance under naïve and primed conditions as intermediate tolerant and cold tolerant (Zuther, Schulz, Childs & Hincha, 2012), were used for the experiments. Plants were sown and grown on soil in a climate chamber with 20°C day-time temperature and 6°C night-time temperature in a 14 h light cycle with a light intensity of 180 μE m-2 s-1 and a humidity of 60 % at day and 70 % at night. After one week the plants were moved to a short-day climate chamber with conditions as followed: 20°C/16°C day/night, 8 h day length, 180 μE m-2 s-1, humidity of 60 %/75 % day/night. The plants were kept at this short-day condition for a week before being pricked (10 plants in one 10 cm pot). After pricking, the plants were kept for another seven days under short-day conditions before being transferred to long-day for another week. The conditions for long-day were 20°C day and 16°C night temperature with a day length of 16 h at a light intensity of 200 μE m-2 s-1. A developmental control, which was only triggered for three days under the same conditions described above, was grown for three weeks at short day but two weeks at long day conditions to compensate for the seven days of memory phase plants underwent in the priming and triggering setup.

extract_protocol:
Homogenized plant material of five replicate samples per accession and treatment was pooled to 100 mg separately for the three independent biological experiments which resulted in 36 samples for the analysis. Total RNA was isolated using a TRIzol protocol based on the ‘single step’ method (Sprenger, Kurowsky, Horn, Erban, Seddig, Rudack, Fischer, Walther, Zuther, Köhl, Hincha & Kopka, 2016). Four μg of each RNA sample was further treated with DNase (RapidOut DNA-removal Kit, Thermo Scientific). Absence of genomic DNA contamination was confirmed by qRT-PCR using intron-specific primers (At5g65080). Finally, RNA quality and integrity were verified with Agilent 2100 Bioanalyzer (Agilent Technologies, Santa Clara, CA, USA).
Library preperation with NEBNext Ultra™ Directional RNA Library Prep Kit for Illumina (New England Biolabs) and library type RNA library including polyA enrichment

treatment_protocol: Four week old plants were cold primed at a constant temperature of 4°C in a climate chamber at 16 h day length with a light intensity of 90 μE m−2 s−1 and a humidity of 70 % to 80 % for three days according to previously established cold priming protocols (Rohde, Hincha & Heyer, 2004, Zuther et al., 2012). For a memory phase, also called lag or deacclimation phase, plants were transferred for seven days back to the greenhouse at 20°C/18°C day/night temperature and at least 200 μE m−2 s−1 light as described previously (Pagter, Alpers, Erban, Kopka, Zuther & Hincha, 2017, Zuther, Juszczak, Lee, Baier & Hincha, 2015). The triggering, the application of a second cold treatment, was done by transferring the plants for three days back to above described priming conditions.

tag: accession

tag: condition

value: Primed developmental control

tag: detailed condition

value: 3 days at 4oC


title: C28P3L7T3-3 N14

description: data in column AJ

value: Triggered

value: Second cold treatment for 3 days at 4oC


title: C28P3L7T3-3 Col-0

description: data in column AI


title: C28P3L7-3 N14

description: data in column AF

value: Primed and lag phase

value: 3 days at 4oC, 7 days at 20oC


title: C35-3 Col-0

description: data in column AC

value: Developmental control

value: 35 days of growth


title: C28P3L7-3 Col-0

description: data in column AE


title: C35-3 N14

description: data in column AD


title: C35P3-3 Col-0

description: data in column AG


title: C28P3-3 N14

description: data in column AB

source_name: pool of 5 replicates with 15 rosettes

value: Primed


title: C28P3-3 Col-0

description: data in column AA


title: C28-3 N14

description: data in column Z

value: Naive Control

value: 28 days of growth


title: C28-3 Col-0

description: data in column Y


title: C28P3L7T3-2 N14

description: data in column X


title: C35P3-2 N14

description: data in column V


title: C28P3L7T3-2 Col-0

description: data in column W


title: C28P3L7-2 Col-0

description: data in column S


title: C35P3-2 Col-0

description: data in column U


title: C28P3L7-2 N14

description: data in column T


title: C35-2 N14

description: data in column R


title: C35-2 Col-0

description: data in column Q


title: C28P3-2 N14

description: data in column P


title: C28-2 N14

description: data in column N


title: C28P3-2 Col-0

description: data in column O


title: heart tissue_sunitinib_rep3

type: RNA

city: Shijiazhuang

first: Shen

last: Li

state: Hebei

address: Zhongshan Road 361

country: China

institute: Hebei Medical University

description: Gene expression in C62mice

hyb_protocol: Each slide was hybridized with 100ng Cy3-labeled RNA using miRNA Complete Labeling and Hyb Kit (Cat # 5190-0456, Agilent technologies, Santa Clara, CA, US) in hybridization Oven (Cat # G2545A, Agilent technologies, Santa Clara, CA, US) at 55°C，20 rpm for 20 hours according to the manufacturer’s instructions, hybridization section. After hybridization, slides were washed in staining dishes (Cat # 121, Thermo Shandon, Waltham, MA, US) with Gene Expression Wash Buffer Kit (Cat #5188-5327, Agilent technologies, Santa Clara, CA, US).

scan_protocol: Agilent Microarray Scanner (Cat # G2565CA，Agilent technologies, Santa Clara, CA, US)

data_processing: Slides were scanned by Agilent Microarray Scanner (Cat # G2565CA, Agilent technologies, Santa Clara, CA, US) and Feature Extraction software 10.7 (Agilent technologies, Santa Clara, CA, US) with default settings. Raw data were normalized by Quantile algorithm, included in the R package AgiMicroRna(López-Romero, P. BMC Genomics. 2011.)

organism: Mus musculus

source_name: heart tissue, replicate 3

label_protocol: miRNA molecular in total RNA was labeled by miRNA Complete Labeling and Hyb Kit (Cat # 5190-0456, Agilent technologies, Santa Clara, CA, US) followed the manufacturer’s instructions, labeling section.

extract_protocol: Total RNA was extracted and purified using mirVana™ miRNA Isolation Kit without phenol (Cat # AM1561, Ambion, Austin, TX, US), following the manufacturer’s instructions and checked for a RIN number to inspect RNA integration by an Agilent Bioanalyzer 2100 (Agilent technologies, Santa Clara, CA, US).

treatment_protocol: left ventricle tissue of C57mice was rinsed with normal saline,then store under -80 before experiment

tag: strain

tag: tissue

value: heart left ventricle

tag: Sex

value: male


title: heart tissue_sunitinib_rep2

description: Gene expression in C61mice

source_name: heart tissue, replicate 2


title: C35-1 Col-0

description: data in column E


title: C28P3-1 Col-0

description: data in column C


title: C28P3-1 N14

description: data in column D


title: C28P3L7-1 N14

description: data in column H


title: C35P3-1 Col-0

description: data in column I


title: C28-2 Col-0

description: data in column M


title: C28P3L7T3-1 Col-0

description: data in column K


title: C28P3L7-1 Col-0

description: data in column G


title: C35-1 N14

description: data in column F


title: C35P3-1 N14

description: data in column J


title: C28P3L7T3-1 N14

description: data in column L


title: heart tissue_sunitinib_rep1

description: Gene expression in C60mice

source_name: heart tissue, replicate 1


title: C28-1 N14

description: data in column B


title: C28-1 Col-0

description: data in column A


title: heart tissue_control_rep1

description: Gene expression in C57mice


title: heart tissue_control_rep2

description: Gene expression in C58mice


title: 6_4mg_CI_24h

city: Koblenz

first: Andreas

last: Schüttler

address: Am Mainzer Tor 1

department: Department Biochemistry and Ecotoxicology

institute: German Federal Institute of Hydrology

hyb_protocol: One-Color Quick Amp Labeling Kit, according to manufacturer's protocol (Agilent Technologies, Waldbronn, Germany)

scan_protocol: Agilent DNA Microarray Scanner and Agilent Feature Extraction Software V11.5.1.1, according to manufacturer's protocol.

data_processing:
Background subtraction, Quantile normalization between arrays
Software for data normalization:
R software for windows (V2.15) package limma (V3.16.5)

organism: Danio rerio

source_name: mRNA from pooled whole zebrafish embryos, labeled with Cyanine-3 (green)

extract_protocol: Trizol followed by RNeasy MiniKit cleanup (Qiagen) using the manufacturers’ protocols

value: whole embryo

tag: treatment

value: PCE

tag: time point

tag: concentration

tag: nano

value: CI treated with nanomaterial (Carbo Iron 10 mg/l)

tag: batch

value: six


title: 6_1mg_CI_24h

label_protocol: One-Color Quick Amp Labeling Kit, according to manufacturer's protocol (Agilent Technologies, Waldbronn, Germany)


title: 6_16mg_CI_24h


title: 6_K2_CI_24h

value: Control


title: 6_8mg_CI_24h


title: 5_32mg_24h

value: nCI (not treated with nanomaterial)

value: five


title: 5_8mg_24h


title: 6_32mg_CI_24h


title: 6_2mg_CI_24h


title: 5_K2_24h


title: 6_K1_24h


title: 5_2mg_24h


title: 5_4mg_24h


title: 5_1mg_24h


title: heart tissue_control_rep3

description: Gene expression in C59mice


title: 5_16mg_24h


title: 4_K2_Cl_12h

value: four


title: 4_32mg_Cl_12h


title: 5_K1_24h


title: 4_2mg_Cl_12h


title: 4_8mg_Cl_12h


title: EG103 untreated at 48h, biological rep3

city: Msida

first: Rena

last: Balzan

address: Tal-Qroqq

department: Physiology & Biochemistry

country: Malta

institute: University of Malta

description:
MATα leu2-3 112 his3Δ1 trp1-289a ura3-52 GAL+
Gene expression data from EG103 yeast cells grown in untreated ethanol medium for 48 h

hyb_protocol: After fragmentation, 7.5 micrograms of biotin-labeled cRNA were hybridized to each GeneChip® Yeast Genome 2.0 Array Chip (Affymetrix®), according to the manufacturer’s instructions (Affymetrix®). GeneChips were washed and stained using the Affymetrix® Fluidics Station 450.

scan_protocol: GeneChips were scanned using the Affymetrix® GeneChip Scanner 3000.

data_processing: The data was normalized using the Robust Multi-Array average (RMA) algorithm, implemented with Altanalyze Version 2.0.8.1 (University of Cincinnati). Normalized log2-expression values, fold changes, moderated t-statistics and corresponding Benjamini-Hochberg-adjusted P-values were determined for the probe sets of every individual S. cerevisiae gene present on the microarray chip. The microarray experiments were carried out on three biological replicates per strain.

label: biotin

organism: Saccharomyces cerevisiae

source_name: Wild-type EG103 yeast cells grown in untreated ethanol medium for 48 h

label_protocol: Biotin-labeled cRNA samples were prepared using the GeneChip® 3’ IVT Express Kit (Affymetrix®) using 500 ng of total RNA, according to the manufacturers’ instructions (GeneChip® 3’ IVT Express Kit (Affymetrix®) User Manual P/N 702646 Rev. 4).

growth_protocol: Yeast cells were aerobically cultivated for 48 h in YPE medium (1% (w/v) yeast extract, 2% (w/v) bactopeptone and 3% (v/v) ethanol) in the absence and presence of 15 mM aspirin (acetylsalicylic acid, ASA) (Sigma-Aldrich), at 28˚C with constant shaking at 250 rpm. The pH of the aspirin-treated YPE medium was adjusted to 5.5 using 1 M Trizma base (Sigma-Aldrich), prior to inoculation.

extract_protocol: Total yeast RNA was extracted and purified using the Qiagen® RNeasy Mini Kit including on-column DNase I digestion, according to the manufacturer’s instructions.

treatment_protocol: Mechanical lysis of yeast cells was carried out using a micro-minibeadbeater (Biospec), in the presence of acid-washed glass beads and lysis buffer RLT provided with the Qiagen® RNeasy Mini Kit.

tag: genotype

value: MATα leu2-3 112 his3delta1 trp1-289a ura3-52 GAL+


title: 4_4mg_Cl_12h


title: EG103 ASA-treated at 48h, biological rep2

description:
MATα leu2-3 112 his3Δ1 trp1-289a ura3-52 GAL+
Gene expression data from EG103 yeast cells grown in aspirin-treated ethanol medium for 48 h

source_name: Wild-type EG103 yeast cells grown in aspirin-treated ethanol medium for 48 h


title: EG103 ASA-treated at 48h, biological rep3


title: EG103 ASA-treated at 48h, biological rep1


title: EG103 untreated at 48h, biological rep2


title: 3_K2_12h

value: three


title: 4_K1_12h


title: 4_1mg_Cl_12h


title: 3_16mg_12h


title: 3_1mg_12h


title: 3_4mg_12h


title: 3_K1_12h


title: 3_32mg_12h


title: 3_8mg_12h


title: 4_16mg_Cl_12h


title: EG103 untreated at 48h, biological rep1


title: 3_2mg_12h


title: GAL-SIC1Δ3P_biological_rep2_190min

city: Durham

first: Steven

middle: B

last: Haase

state: NC

department: Biology

country: USA

institute: Duke University

description: Gene expression levels during cell-cycle arrest

hyb_protocol: DNA microarray hybridization was performed according to standard Affymetrix protocols by the Duke Micorarray Core Facility.

scan_protocol: Array scanning was carried by the Duke Micorarray Core Facility using standard Affymetrix protocols.

data_processing: Data from this study, Orlando et al 2008, and Kovacs et al 2012 were normalized together using the dChip implementation with default parameters from the affy package (1.32.1) within R/Bioconductor. S. pombe probes are removed before analysis.

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 190 min

label_protocol: biotin

growth_protocol: Standard YEP medium with 2% sugar

extract_protocol: Standard acid phenol method

treatment_protocol: Cells were collected on filters and then flash-frozen in liquid nitrogen.

tag: background strain


title: EG110 ASA-treated at 48h, biological rep2

description:
(EG103 sod2 Δ:: TRP1)
Gene expression data from EG110 yeast cells grown in aspirin-treated ethanol medium for 48 h

source_name: MnSOD-deficient EG110 yeast cells grown in aspirin-treated ethanol medium for 48 h

value: (EG103 sod2 delta::TRP1)


title: GAL-SIC1Δ3P_biological_rep2_140min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 140 min


title: GAL-SIC1Δ3P_biological_rep2_160min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 160 min


title: GAL-SIC1Δ3P_biological_rep2_100min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 100 min


title: GAL-SIC1Δ3P_biological_rep2_300min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 300 min


title: GAL-SIC1Δ3P_biological_rep2_150min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 150 min


title: GAL-SIC1Δ3P_biological_rep2_170min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 170 min


title: EG110 ASA-treated at 48h, biological rep1


title: GAL-SIC1Δ3P_biological_rep2_200min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 200 min


title: GAL-SIC1Δ3P_biological_rep2_210min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 210 min


title: GAL-SIC1Δ3P_biological_rep2_220min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 220 min


title: GAL-SIC1Δ3P_biological_rep2_230min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 230 min


title: GAL-SIC1Δ3P_biological_rep2_130min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 130 min


title: GAL-SIC1Δ3P_biological_rep2_250min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 250 min


title: EG110 ASA-treated at 48h, biological rep3


title: GAL-SIC1Δ3P_biological_rep2_240min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 240 min


title: GAL-SIC1Δ3P_biological_rep2_260min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 260 min


title: GAL-SIC1Δ3P_biological_rep2_110min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 110 min


title: GAL-SIC1Δ3P_biological_rep2_270min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 270 min


title: GAL-SIC1Δ3P_biological_rep2_90min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 90 min


title: GAL-SIC1Δ3P_biological_rep2_120min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 120 min


title: GAL-SIC1Δ3P_biological_rep2_280min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 280 min


title: GAL-SIC1Δ3P_biological_rep2_290min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 290 min


title: EG110 untreated at 48h, biological rep1

description:
(EG103 sod2 Δ:: TRP1)
Gene expression data from EG110 yeast cells grown in untreated ethanol medium for 48 h

source_name: MnSOD-deficient EG110 yeast cells grown in untreated ethanol medium for 48 h


title: EG110 untreated at 48h, biological rep2


title: GAL-SIC1Δ3P_biological_rep2_180min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 180 min


title: GAL-SIC1Δ3P_biological_rep1_340min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 340 min


title: GAL-SIC1Δ3P_biological_rep2_20min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 20 min


title: GAL-SIC1Δ3P_biological_rep1_170min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 170 min


title: GAL-SIC1Δ3P_biological_rep1_200min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 200 min


title: GAL-SIC1Δ3P_biological_rep2_30min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 30 min


title: GAL-SIC1Δ3P_biological_rep2_10min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 10 min


title: GAL-SIC1Δ3P_biological_rep1_230min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 230 min


title: GAL-SIC1Δ3P_biological_rep1_240min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 240 min


title: GAL-SIC1Δ3P_biological_rep1_180min


title: GAL-SIC1Δ3P_biological_rep2_60min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 60 min


title: GAL-SIC1Δ3P_biological_rep2_70min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 70 min


title: GAL-SIC1Δ3P_biological_rep1_220min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 220 min


title: GAL-SIC1Δ3P_biological_rep1_290min


title: GAL-SIC1Δ3P_biological_rep1_260min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 260 min


title: GAL-SIC1Δ3P_biological_rep1_270min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 270 min


title: GAL-SIC1Δ3P_biological_rep1_300min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 300 min


title: GAL-SIC1Δ3P_biological_rep1_250min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 250 min


title: GAL-SIC1Δ3P_biological_rep1_280min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 280 min


title: GAL-SIC1Δ3P_biological_rep1_320min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 320 min


title: GAL-SIC1Δ3P_biological_rep1_330min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 330 min


title: GAL-SIC1Δ3P_biological_rep1_310min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 310 min


title: GAL-SIC1Δ3P_biological_rep2_50min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 50 min


title: GAL-SIC1Δ3P_biological_rep2_40min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 40 min


title: GAL-SIC1Δ3P_biological_rep1_190min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 190 min


title: GAL-SIC1Δ3P_biological_rep1_210min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 210 min


title: GAL-SIC1Δ3P_biological_rep1_350min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 350 min


title: GAL-SIC1Δ3P_biological_rep1_360min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 360 min


title: GAL-SIC1Δ3P_biological_rep1_130min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 130 min


title: GAL-SIC1Δ3P_biological_rep1_120min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 120 min


title: EG110 untreated at 48h, biological rep3

source_name: MnSOD-deficient EG110 yeast cells grown in untreated ethanol medium for 48 h


title: GAL-SIC1Δ3P_biological_rep1_20min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 20 min


title: GAL-SIC1Δ3P_biological_rep1_10min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 10 min


title: GAL-SIC1Δ3P_biological_rep1_80min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 80 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_300min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 300 min


title: GAL-SIC1Δ3P_biological_rep1_90min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 90 min


title: GAL-SIC1Δ3P_biological_rep2_80min


title: GAL-SIC1Δ3P_biological_rep1_70min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 70 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_250min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 250 min


title: GAL-SIC1Δ3P_biological_rep1_140min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 140 min


title: GAL-SIC1Δ3P_biological_rep1_100min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 100 min


title: GAL-SIC1Δ3P_biological_rep1_150min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 150 min


title: GAL-SIC1Δ3P_biological_rep1_110min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 110 min


title: GAL-SIC1Δ3P_biological_rep1_30min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 30 min


title: GAL-SIC1Δ3P_biological_rep1_40min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 40 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_270min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 270 min


title: GAL-SIC1Δ3P_biological_rep1_60min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 60 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_260min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 260 min


title: GAL-SIC1Δ3P_biological_rep1_50min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 50 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_240min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 240 min


title: GAL-SIC1Δ3P_biological_rep1_160min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P, 160 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_280min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 280 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_290min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 290 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_230min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 230 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_220min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 220 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_200min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 200 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_210min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 210 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_180min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 180 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_190min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 190 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_140min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 140 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_130min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 130 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_150min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 150 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_120min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 120 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_110min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 110 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_100min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 100 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_70min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 70 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_20min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 20 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_40min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 40 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_90min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 90 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_60min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 60 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_80min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 80 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_10min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 10 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_170min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 170 min


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_50min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 50 min


title: Cerevisiae_cdc16cdc28whi5stb1_230min_rep2

description: Gene expression data during cell cycle arrest in the indicated strain

source_name: Cerevisiae, cdc16cdc28whi5stb1, 230min, rep2

label_protocol: Affymetrix protocol

growth_protocol: YEP-Dextrose at 37 degree Celcius

treatment_protocol: Release from synchronization in G1


title: Cerevisiae_cdc16cdc28whi5stb1_270min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 270min, rep2


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_160min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 160 min


title: Cerevisiae_cdc16cdc28whi5stb1_260min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 260min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_300min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 300min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_280min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 280min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_290min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 290min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_250min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 250min, rep2


title: GAL-SIC1Δ3P_nrm1Δyhp1Δyox1Δ_biological_rep1_30min

source_name: S. cerevisiae culture, GAL-SIC1Δ3P nrm1Δ yhp1Δ yox1Δ, 30 min


title: Cerevisiae_cdc16cdc28whi5stb1_240min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 240min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_220min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 220min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_200min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 200min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_190min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 190min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_180min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 180min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_210min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 210min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_170min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 170min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_72min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 72min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_80min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 80min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_140min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 140min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_100min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 100min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_130min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 130min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_0min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 0min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_120min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 120min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_110min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 110min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_56min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 56min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_16min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 16min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_8min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 8min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_40min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 40min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_270min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 270min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_32min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 32min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_24min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 24min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_160min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 160min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_280min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 280min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_300min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 300min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_150min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 150min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_260min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 260min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_48min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 48min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_90min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 90min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_64min_rep2

source_name: Cerevisiae, cdc16cdc28whi5stb1, 64min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_240min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 240min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_210min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 210min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_220min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 220min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_230min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 230min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_80min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 80min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_290min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 290min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_160min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 160min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_170min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 170min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_48min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 48min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_130min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 130min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_120min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 120min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_32min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 32min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_140min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 140min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_64min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 64min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_190min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 190min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_40min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 40min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_72min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 72min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_200min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 200min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_24min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 24min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_250min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 250min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_150min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 150min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_110min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 110min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_0min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 0min, rep1


title: Cerevisiae_cdc28whi5stb1_290min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 290min, rep2


title: Cerevisiae_cdc28whi5stb1_300min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 300min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_56min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 56min, rep1


title: Cerevisiae_cdc28whi5stb1_280min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 280min, rep2


title: Cerevisiae_cdc28whi5stb1_270min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 270min, rep2


title: Cerevisiae_cdc28whi5stb1_230min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 230min, rep2


title: Cerevisiae_cdc28whi5stb1_210min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 210min, rep2


title: Cerevisiae_cdc28whi5stb1_240min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 240min, rep2


title: Cerevisiae_cdc28whi5stb1_170min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 170min, rep2


title: Cerevisiae_cdc28whi5stb1_220min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 220min, rep2


title: Cerevisiae_cdc28whi5stb1_250min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 250min, rep2


title: Cerevisiae_cdc28whi5stb1_120min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 120min, rep2


title: Cerevisiae_cdc28whi5stb1_140min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 140min, rep2


title: Cerevisiae_cdc28whi5stb1_160min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 160min, rep2


title: Cerevisiae_cdc28whi5stb1_130min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 130min, rep2


title: Cerevisiae_cdc28whi5stb1_110min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 110min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_8min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 8min, rep1


title: Cerevisiae_cdc28whi5stb1_200min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 200min, rep2


title: Cerevisiae_cdc28whi5stb1_180min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 180min, rep2


title: Cerevisiae_cdc28whi5stb1_90min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 90min, rep2


title: Cerevisiae_cdc28whi5stb1_72min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 72min, rep2


title: Cerevisiae_cdc28whi5stb1_64min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 64min, rep2


title: Cerevisiae_cdc28whi5stb1_80min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 80min, rep2


title: Cerevisiae_cdc28whi5stb1_56min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 56min, rep2


title: Cerevisiae_cdc28whi5stb1_190min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 190min, rep2


title: Cerevisiae_cdc28whi5stb1_150min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 150min, rep2


title: Cerevisiae_cdc28whi5stb1_100min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 100min, rep2


title: Cerevisiae_cdc28whi5stb1_16min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 16min, rep2


title: Cerevisiae_cdc28whi5stb1_32min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 32min, rep2


title: Cerevisiae_cdc28whi5stb1_8min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 8min, rep2


title: Cerevisiae_cdc28whi5stb1_40min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 40min, rep2


title: Cerevisiae_cdc28whi5stb1_48min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 48min, rep2


title: Cerevisiae_cdc28whi5stb1_0min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 0min, rep2


title: Cerevisiae_cdc16cdc28whi5stb1_16min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 16min, rep1


title: Cerevisiae_cdc28whi5stb1_260min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 260min, rep1


title: Cerevisiae_cdc28whi5stb1_240min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 240min, rep1


title: Cerevisiae_cdc28whi5stb1_250min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 250min, rep1


title: Cerevisiae_cdc28whi5stb1_280min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 280min, rep1


title: Cerevisiae_cdc28whi5stb1_300min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 300min, rep1


title: Cerevisiae_cdc28whi5stb1_230min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 230min, rep1


title: Cerevisiae_cdc28whi5stb1_290min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 290min, rep1


title: Cerevisiae_cdc28whi5stb1_170min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 170min, rep1


title: Cerevisiae_cdc28whi5stb1_24min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 24min, rep2


title: Cerevisiae_cdc28whi5stb1_190min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 190min, rep1


title: Cerevisiae_cdc28whi5stb1_180min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 180min, rep1


title: Cerevisiae_cdc28whi5stb1_200min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 200min, rep1


title: Cerevisiae_cdc28whi5stb1_220min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 220min, rep1


title: Cerevisiae_cdc28whi5stb1_270min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 270min, rep1


title: Cerevisiae_cdc28whi5stb1_160min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 160min, rep1


title: Cerevisiae_cdc28whi5stb1_150min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 150min, rep1


title: Cerevisiae_cdc28whi5stb1_110min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 110min, rep1


title: Cerevisiae_cdc28whi5stb1_120min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 120min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_180min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 180min, rep1


title: Cerevisiae_cdc28whi5stb1_130min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 130min, rep1


title: Cerevisiae_cdc28whi5stb1_100min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 100min, rep1


title: Cerevisiae_cdc28whi5stb1_80min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 80min, rep1


title: Cerevisiae_cdc28whi5stb1_90min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 90min, rep1


title: Cerevisiae_cdc28whi5stb1_210min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 210min, rep1


title: Cerevisiae_cdc28whi5stb1_64min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 64min, rep1


title: Cerevisiae_cdc28whi5stb1_56min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 56min, rep1


title: Cerevisiae_cdc28whi5stb1_40min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 40min, rep1


title: Cerevisiae_cdc28whi5stb1_16min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 16min, rep1


title: Cerevisiae_cdc28whi5stb1_48min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 48min, rep1


title: Cerevisiae_cdc28whi5stb1_140min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 140min, rep1


title: Cerevisiae_cdc28whi5stb1_0min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 0min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_310min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 310min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_290min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 290min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_270min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 270min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_250min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 250min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_210min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 210min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_190min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 190min, rep2


title: Cerevisiae_cdc28whi5stb1_72min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 72min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_230min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 230min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_170min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 170min, rep2


title: Cerevisiae_cdc28whi5stb1_32min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 32min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_150min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 150min, rep2


title: Cerevisiae_cdc28whi5stb1_24min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 24min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_70min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 70min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_130min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 130min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_110min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 110min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_90min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 90min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_50min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 50min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_30min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 30min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_0min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 0min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_5min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 5min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_370min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 370min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_390min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 390min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_15min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 15min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_410min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 410min, rep1


title: Cerevisiae_cdc28whi5stb1_8min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 8min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_310min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 310min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_250min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 250min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_330min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 330min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_210min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 210min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_190min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 190min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_290min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 290min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_270min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 270min, rep1


title: Cerevisiae_cdc28whi5stb1_260min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 260min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_230min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 230min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_150min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 150min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_170min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 170min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_130min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 130min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_110min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 110min, rep1


title: Cerevisiae_cdc16cdc28whi5stb1_100min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 100min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_30min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 30min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_90min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 90min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_15min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 15min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_70min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 70min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_50min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 50min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_10min_rep2

source_name: Cerevisiae, cdc28whi5stb1, 10min, rep2


title: Cerevisiae_cdc28whi5stb1_elutr_10min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 10min, rep1


title: Cerevisiae_cdc28whi5stb1_elutr_0min_rep1

source_name: Cerevisiae, cdc28whi5stb1, 0min, rep1


title: JP2NT biological replicate 2

city: Iowa City

first: Long-Sheng

last: Song

state: Iowa

address: 285 Newton Road

department: Department of Internal Medicine

institute: University of Iowa

hyb_protocol: Manual of GeneChip Hybridization, Wash & Stain Kit (Cat# 901240)

scan_protocol: Manual of Affymetrix GeneChip Scanner 7G

data_processing: The R package limma (version 3.22.7) was used to analyze microarrary data including background correction, normalization and expression calculation.

source_name: Ventricle cardiomyocytes

label_protocol: Manual of GeneChip 3' IVT Express kit (Target Amplification, Labeling and Control Kit) Cat# 901229-D

growth_protocol: Adult mouse cardiomyocytes were isolated using collagenase-II in langendorff perfused hearts. Cells were plated on laminin-treated dishes for 2 hours in the presence of 5% FBS to allow attachment to surface. Then the cells were cultured in serum free MEM medium supplemented with 1% 100X (Insulin-Transferrin-Selenium), 1% 100XL-glutamin, 1% 100X P/S, Blebbistatin 25uM, BSA 0.2%, 10mM Hepes, 1.6mM NaHCO3, 100uM 2-Mercaptoethanol.

extract_protocol: Cells were harvested 48 hours after virus infection. RNA was extracted using RNeasy (Qiagen, Catalog #74104). Total RNA was treated with DNASE-I (New England Biolabs, Catalog #M0303S) to eliminate genomic DNA and then cleaned using RNA cleanup Kit (Qiagen, Catalog #74204).

treatment_protocol: Empty adenovirus or adenoviruses carrying JP2, JP2NT cDNA were added in culture medium after the cells attached to surface (MOI 100).

value: Heart

tag: cell type

value: mouse cardiomyocytes


title: JP2OE biological replicate 2


title: JP2OE biological replicate 1


title: Empty biological replicate 2


title: Cerevisiae_cdc16cdc28whi5stb1_90min_rep1

source_name: Cerevisiae, cdc16cdc28whi5stb1, 90min, rep1


title: Empty biological replicate 1


title: TriFLU_MU_168h_5

city: London

first: Deniz

last: Cizmeci

address: Imperial College London

country: United Kingdom

institute: Imperial College London

description:
m.muscle.TriFlu.168.5
Gene expression in muscle 168hrs after injection with Agrippal.

hyb_protocol: Quantity and labeling efficiency were verified before hybridization to whole-genome 8×60 k mouse expression arrays (Agilent design ID 028005).

scan_protocol: Scanned at 5 μm using an Agilent scanner.

data_processing:
Image analysis and data extraction were performed with Agilent's Feature Extraction software (version 11.5) to generate the raw expression data.
Microarray data were pre-processed and normalised using R package limma. The raw data were first background corrected using the normexp method. Background corrected signals were quantile normalised between arrays.

label: not provided

source_name: Muscle, 168hr, Agrippal, replicate 5

label_protocol: Gene expression data were generated from high-quality RNA samples on an Agilent microarray platform (Agilent Technologies). RNA was labeled with a Low Input Quick Amp Labeling Kit (Agilent Technologies) according to the manufacturer’s instructions.

extract_protocol:
Tissue Samples - Small pieces of tissue (3mm x 3mm x 3mm) were harvested and flash frozen in liquid nitrogen. Total RNA isolation including the miRNA species was performed using the miRNeasy mini kit (Qiagen, UK), as described in the standard protocol for purification of microRNA and total RNA from tissues and cells. Briefly, 700 µL QIAzol lysis reagent was added to the tissue sample, and disrupted and homogenized using a tissueruptor probe. Homogenate was incubated at room temperature (15–25°C) for 5 min before addition of 140 µL chloroform and vigorous shaking for 15 s. After incubation at room temperature for 2–3 min the homogenate was centrifuged for 15 min at 12,000 x g at 4°C. The upper aqueous phase was then transferred to a new collection tube (350 µL). 1.5 volumes (525 µL) of 100% ethanol was added and mixed thoroughly by pipetting then all sample was transferred into an RNeasy® Mini column, the sample being pulled through the column by vacuum manifold. The sample on the column was washed using 700 µL Buffer RWT, followed by 2 washes using 500 µL Buffer RPE. The RNeasy Mini column was then placed into a new 2 mL collection tube and centrifuged at full speed for 1 min to completely dry the membrane. The RNeasy Mini column was then transferred to a new 1.5 mL collection tube and 30 µL RNase-free water was directly pipetted onto the column membrane, then centrifuged for 1 min at ≥8000 x g to elute. Purified RNA was stored at -80°C until required for microarray hybridisation.
Blood Samples - 100 µL of peripheral blood harvested from the mouse tail was collected directly into an RNAprotect Animal Blood Tube and the tubes incubated at room temperature (15–25°C) for 2 hours. The blood tubes were then flash frozen in liquid nitrogen for storage. RNA isolation was performed as described in the kit protocol for purification of Total RNA, including miRNA, from RNAprotect stabilized animal blood tubes (100 µL). Briefly, completely thawed tubes were first centrifuged for 3 min at 5000 x g, then the supernatant removed by careful pipetting. The pellet was resuspended in 1 mL of RNase-free water and transferred to a clean RNase-free 2 mL tube. The pellet was completely resuspended in the water, centrifuged for 3 min at 5000 x g and the supernatant carefully removed by pipetting. The pellet was then dissolved in 240 µL Buffer RSB before addition of 200 µL Buffer RBT and 20 µL proteinase K enzyme solution. The tube was vortexed for 5 s then incubated at 55°C for 10 min in a shaking incubator at 1200 rpm. After incubation the sample was added into a Qiashredder spin column and centrifuged for 3 min at 10,000 x g. The supernatant was then transferred to a clean tube and 690 µL 100% ethanol added, mixed thoroughly by pipetting then all sample was transferred into an RNeasy Mini column, the sample being pulled through the column by vacuum manifold. The sample on the column was washed using 350 µL Buffer RWT, followed by addition of 80 µL DNase I solution (in Buffer RDD) and incubation at room temperature for 15 min. After DNase 1 treatment the column was washed with a further 350 µL of RWT followed by 2 washes using 500 µL Buffer RPE and a final wash with 500 µL 80% RNase-free ethanol. The RNeasy Mini column was then placed into a new 2 mL collection tube and centrifuged at full speed for 1 min to completely dry the membrane. The column was then transferred to a new 1.5 mL collection tube and 30 µL RNase-free REB buffer was directly pipetted onto the column membrane, then centrifuged for 1 min at ≥8000 x g to elute. Purified RNA was stored at -80°C until required for microarray hybridisation.

treatment_protocol: 6- to 8-week-old female CB6F1 mice were purchased from Charles River. Animals received a single injection in their right hind leg quadricep muscle and were then culled at specific intervals after the vaccination, either 4, 8, 24, 48, 72 or 168 Hrs. A control group that did not receive a vaccination was culled and tissues harvested. A further control group was employed that received a single saline injection in the right hind leg quadriceps muscle and were culled at the same intervals as the animals that received an active formulation. When each animal was culled the injected muscle site and the iliac lymph nodes that drain the hind leg quadriceps muscles were harvested and flash frozen in liquid nitrogen. Peripheral blood, sampled from the mouse tail vein immediately before humane euthanasia was collected (100 µL) in RNAprotect animal blood tubes (Qiagen, UK). Groups of mice (n = 5 per group per timepoint) received 1/10th of the human dose in 50 µL of one of the following licensed vaccines: Pentavac SD (Diphtheria, Tetanus, Pertussis (Whole Cell), Hepatitis B (rDNA) and Haemophilus Type b Conjugate Vaccine); Agrippal (Trivalent Flu Subunits – H3N2, H1N1 and Influenza B); Fluad (Trivalent Flu Subunits – H3N2, H1N1 and Influenza B + MF59® (oil-in-water emulsion)); Engerix B (Recombinant Hepatitis B) and either Poly I:C (Sigma, UK – P0913: 50 µL of a 1 mg/mL solution), LPS (Invivogen, UK – LPS-EB Ultrapure: 50 µL of a 0.5 mg/mL solution), IFA (Seppic, France – Montanide ISA 51 VG: 50 µL of a 1:1 mixture of IFA and Saline) or Saline alone (Sigma, UK – 50 µL).

tag: strain/background

tag: gender

value: Female

value: muscle

value: Agrippal

tag: timepoint

tag: animal replicate


title: TriFLU-MF59_MU_168h_3

description:
m.muscle.TriFluMF59.168.3
Gene expression in muscle 168hrs after injection with Fluad.

source_name: Muscle, 168hr, Fluad, replicate 3

value: Fluad


title: TriFLU-MF59_MU_168h_4

description:
m.muscle.TriFluMF59.168.4
Gene expression in muscle 168hrs after injection with Fluad.

source_name: Muscle, 168hr, Fluad, replicate 4


title: TriFLU-MF59_MU_168h_2

description:
m.muscle.TriFluMF59.168.2
Gene expression in muscle 168hrs after injection with Fluad.

source_name: Muscle, 168hr, Fluad, replicate 2


title: SAL_MU_168h_5

description:
m.muscle.saline.168.5
Gene expression in muscle 168hrs after injection with saline.

source_name: Muscle, 168hr, Saline, replicate 5

value: saline


title: TriFLU-MF59_MU_168h_1

description:
m.muscle.TriFluMF59.168.1
Gene expression in muscle 168hrs after injection with Fluad.

source_name: Muscle, 168hr, Fluad, replicate 1


title: TriFLU-MF59_MU_168h_5

description:
m.muscle.TriFluMF59.168.5
Gene expression in muscle 168hrs after injection with Fluad.

source_name: Muscle, 168hr, Fluad, replicate 5


title: SAL_MU_168h_3

description:
m.muscle.saline.168.3
Gene expression in muscle 168hrs after injection with saline.

source_name: Muscle, 168hr, Saline, replicate 3


title: TriFLU_MU_168h_4

description:
m.muscle.TriFlu.168.4
Gene expression in muscle 168hrs after injection with Agrippal.

source_name: Muscle, 168hr, Agrippal, replicate 4


title: TriFLU_MU_168h_1

description:
m.muscle.TriFlu.168.1
Gene expression in muscle 168hrs after injection with Agrippal.

source_name: Muscle, 168hr, Agrippal, replicate 1


title: TriFLU_MU_168h_2

description:
m.muscle.TriFlu.168.2
Gene expression in muscle 168hrs after injection with Agrippal.

source_name: Muscle, 168hr, Agrippal, replicate 2


title: PolyIC_MU_168h_5

description:
m.muscle.PolyIC.168.5
Gene expression in muscle 168hrs after injection with Poly I:C.

source_name: Muscle, 168hr, Poly I:C, replicate 5

value: PolyIC


title: JP2NT biological replicate 1


title: TriFLU_MU_168h_3

description:
m.muscle.TriFlu.168.3
Gene expression in muscle 168hrs after injection with Agrippal.

source_name: Muscle, 168hr, Agrippal, replicate 3


title: SAL_MU_168h_2

description:
m.muscle.saline.168.2
Gene expression in muscle 168hrs after injection with saline.

source_name: Muscle, 168hr, Saline, replicate 2


title: PolyIC_MU_168h_3

description:
m.muscle.PolyIC.168.3
Gene expression in muscle 168hrs after injection with Poly I:C.

source_name: Muscle, 168hr, Poly I:C, replicate 3


title: PolyIC_MU_168h_4

description:
m.muscle.PolyIC.168.4
Gene expression in muscle 168hrs after injection with Poly I:C.

source_name: Muscle, 168hr, Poly I:C, replicate 4


title: PolyIC_MU_168h_1

description:
m.muscle.PolyIC.168.1
Gene expression in muscle 168hrs after injection with Poly I:C.

source_name: Muscle, 168hr, Poly I:C, replicate 1


title: PERT_MU_168h_5

description:
m.muscle.Pertussis.168.5
Gene expression in muscle 168hrs after injection with Pentavac SD.

source_name: Muscle, 168hr, Pentavac SD, replicate 5

value: Pentavac SD


title: PERT_MU_168h_4

description:
m.muscle.Pertussis.168.4
Gene expression in muscle 168hrs after injection with Pentavac SD.

source_name: Muscle, 168hr, Pentavac SD, replicate 4


title: PolyIC_MU_168h_2

description:
m.muscle.PolyIC.168.2
Gene expression in muscle 168hrs after injection with Poly I:C.

source_name: Muscle, 168hr, Poly I:C, replicate 2


title: PERT_MU_168h_2

description:
m.muscle.Pertussis.168.2
Gene expression in muscle 168hrs after injection with Pentavac SD.

source_name: Muscle, 168hr, Pentavac SD, replicate 2


title: SAL_MU_168h_4

description:
m.muscle.saline.168.4
Gene expression in muscle 168hrs after injection with saline.

source_name: Muscle, 168hr, Saline, replicate 4


title: LPS_MU_168h_4

description:
m.muscle.LPS.168.4
Gene expression in muscle 168hrs after injection with LPS.

source_name: Muscle, 168hr, LPS, replicate 4

value: LPS


title: LPS_MU_168h_3

description:
m.muscle.LPS.168.3
Gene expression in muscle 168hrs after injection with LPS.

source_name: Muscle, 168hr, LPS, replicate 3


title: Cerevisiae_cdc28whi5stb1_elutr_5min_rep1

description: Gene expression data during cell cycle arrest in the indicated strain

source_name: Cerevisiae, cdc28whi5stb1, 5min, rep1


title: LPS_MU_168h_2

description:
m.muscle.LPS.168.2
Gene expression in muscle 168hrs after injection with LPS.

source_name: Muscle, 168hr, LPS, replicate 2


title: PERT_MU_168h_1

description:
m.muscle.Pertussis.168.1
Gene expression in muscle 168hrs after injection with Pentavac SD.

source_name: Muscle, 168hr, Pentavac SD, replicate 1


title: IFA_MU_168h_1

description:
m.muscle.IFA.168.1
Gene expression in muscle 168hrs after injection with IFA.

source_name: Muscle, 168hr, IFA, replicate 1

value: IFA


title: LPS_MU_168h_1

description:
m.muscle.LPS.168.1
Gene expression in muscle 168hrs after injection with LPS.

source_name: Muscle, 168hr, LPS, replicate 1


title: IFA_MU_168h_5

description:
m.muscle.IFA.168.5
Gene expression in muscle 168hrs after injection with IFA.

source_name: Muscle, 168hr, IFA, replicate 5


title: ENG_MU_168h_4

description:
m.muscle.Engerix.168.4
Gene expression in muscle 168hrs after injection with Engerix B.

source_name: Muscle, 168hr, Engerix B, replicate 4

value: Engerix B


title: IFA_MU_168h_3

description:
m.muscle.IFA.168.3
Gene expression in muscle 168hrs after injection with IFA.

source_name: Muscle, 168hr, IFA, replicate 3


title: ENG_MU_168h_2

description:
m.muscle.Engerix.168.2
Gene expression in muscle 168hrs after injection with Engerix B.

source_name: Muscle, 168hr, Engerix B, replicate 2


title: LPS_MU_168h_5

description:
m.muscle.LPS.168.5
Gene expression in muscle 168hrs after injection with LPS.

source_name: Muscle, 168hr, LPS, replicate 5


title: IFA_MU_168h_4

description:
m.muscle.IFA.168.4
Gene expression in muscle 168hrs after injection with IFA.

source_name: Muscle, 168hr, IFA, replicate 4


title: IFA_MU_168h_2

description:
m.muscle.IFA.168.2
Gene expression in muscle 168hrs after injection with IFA.

source_name: Muscle, 168hr, IFA, replicate 2


title: ENG_MU_168h_3

description:
m.muscle.Engerix.168.3
Gene expression in muscle 168hrs after injection with Engerix B.

source_name: Muscle, 168hr, Engerix B, replicate 3


title: TriFLU-MF59_MLN_168h_3

description:
m.MLN.TriFluMF59.168.3
Gene expression in lymph nodes 168hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Fluad, replicate 3

value: draining medial iliac lymph nodes (MLN)


title: TriFLU_MLN_168h_5

description:
m.MLN.TriFlu.168.5
Gene expression in lymph nodes 168hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Agrippal, replicate 5


title: ENG_MU_168h_1

description:
m.muscle.Engerix.168.1
Gene expression in muscle 168hrs after injection with Engerix B.

source_name: Muscle, 168hr, Engerix B, replicate 1


title: TriFLU-MF59_MLN_168h_5

description:
m.MLN.TriFluMF59.168.5
Gene expression in lymph nodes 168hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Fluad, replicate 5


title: TriFLU_MLN_168h_4

description:
m.MLN.TriFlu.168.4
Gene expression in lymph nodes 168hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Agrippal, replicate 4


title: TriFLU-MF59_MLN_168h_1

description:
m.MLN.TriFluMF59.168.1
Gene expression in lymph nodes 168hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Fluad, replicate 1


title: TriFLU-MF59_MLN_168h_4

description:
m.MLN.TriFluMF59.168.4
Gene expression in lymph nodes 168hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Fluad, replicate 4


title: TriFLU-MF59_MLN_168h_2

description:
m.MLN.TriFluMF59.168.2
Gene expression in lymph nodes 168hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Fluad, replicate 2


title: TriFLU_MLN_168h_2

description:
m.MLN.TriFlu.168.2
Gene expression in lymph nodes 168hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Agrippal, replicate 2


title: TriFLU_MLN_168h_1

description:
m.MLN.TriFlu.168.1
Gene expression in lymph nodes 168hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Agrippal, replicate 1


title: ENG_MU_168h_5

description:
m.muscle.Engerix.168.5
Gene expression in muscle 168hrs after injection with Engerix B.

source_name: Muscle, 168hr, Engerix B, replicate 5


title: SAL_MU_168h_1

description:
m.muscle.saline.168.1
Gene expression in muscle 168hrs after injection with saline.

source_name: Muscle, 168hr, Saline, replicate 1


title: TriFLU_MLN_168h_3

description:
m.MLN.TriFlu.168.3
Gene expression in lymph nodes 168hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Agrippal, replicate 3


title: SAL_MLN_168h_3

description:
m.MLN.saline.168.3
Gene expression in lymph nodes 168hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Saline, replicate 3


title: SAL_MLN_168h_4

description:
m.MLN.saline.168.4
Gene expression in lymph nodes 168hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Saline, replicate 4


title: PolyIC_MLN_168h_4

description:
m.MLN.PolyIC.168.4
Gene expression in lymph nodes 168hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Poly I:C, replicate 4


title: PERT_MLN_168h_3

description:
m.MLN.Pertussis.168.3
Gene expression in lymph nodes 168hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Pentavac SD, replicate 3


title: PolyIC_MLN_168h_2

description:
m.MLN.PolyIC.168.2
Gene expression in lymph nodes 168hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Poly I:C, replicate 2


title: SAL_MLN_168h_1

description:
m.MLN.saline.168.1
Gene expression in lymph nodes 168hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Saline, replicate 1


title: SAL_MLN_168h_2

description:
m.MLN.saline.168.2
Gene expression in lymph nodes 168hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Saline, replicate 2


title: PolyIC_MLN_168h_5

description:
m.MLN.PolyIC.168.5
Gene expression in lymph nodes 168hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Poly I:C, replicate 5


title: PolyIC_MLN_168h_3

description:
m.MLN.PolyIC.168.3
Gene expression in lymph nodes 168hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Poly I:C, replicate 3


title: LPS_MLN_168h_5

description:
m.MLN.LPS.168.5
Gene expression in lymph nodes 168hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 168hr, LPS, replicate 5


title: PERT_MLN_168h_2

description:
m.MLN.Pertussis.168.2
Gene expression in lymph nodes 168hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Pentavac SD, replicate 2


title: PolyIC_MLN_168h_1

description:
m.MLN.PolyIC.168.1
Gene expression in lymph nodes 168hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Poly I:C, replicate 1


title: PERT_MLN_168h_5

description:
m.MLN.Pertussis.168.5
Gene expression in lymph nodes 168hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Pentavac SD, replicate 5


title: PERT_MLN_168h_4

description:
m.MLN.Pertussis.168.4
Gene expression in lymph nodes 168hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Pentavac SD, replicate 4


title: PERT_MLN_168h_1

description:
m.MLN.Pertussis.168.1
Gene expression in lymph nodes 168hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Pentavac SD, replicate 1


title: LPS_MLN_168h_4

description:
m.MLN.LPS.168.4
Gene expression in lymph nodes 168hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 168hr, LPS, replicate 4


title: LPS_MLN_168h_1

description:
m.MLN.LPS.168.1
Gene expression in lymph nodes 168hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 168hr, LPS, replicate 1


title: IFA_MLN_168h_5

description:
m.MLN.IFA.168.5
Gene expression in lymph nodes 168hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 168hr, IFA, replicate 5


title: IFA_MLN_168h_4

description:
m.MLN.IFA.168.4
Gene expression in lymph nodes 168hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 168hr, IFA, replicate 4


title: LPS_MLN_168h_2

description:
m.MLN.LPS.168.2
Gene expression in lymph nodes 168hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 168hr, LPS, replicate 2


title: LPS_MLN_168h_3

description:
m.MLN.LPS.168.3
Gene expression in lymph nodes 168hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 168hr, LPS, replicate 3


title: ENG_MLN_168h_4

description:
m.MLN.Engerix.168.4
Gene expression in lymph nodes 168hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Engerix B, replicate 4


title: PERT_MU_168h_3

description:
m.muscle.Pertussis.168.3
Gene expression in muscle 168hrs after injection with Pentavac SD.

source_name: Muscle, 168hr, Pentavac SD, replicate 3


title: IFA_MLN_168h_2

description:
m.MLN.IFA.168.2
Gene expression in lymph nodes 168hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 168hr, IFA, replicate 2


title: IFA_MLN_168h_3

description:
m.MLN.IFA.168.3
Gene expression in lymph nodes 168hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 168hr, IFA, replicate 3


title: SAL_MLN_168h_5

description:
m.MLN.saline.168.5
Gene expression in lymph nodes 168hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Saline, replicate 5


title: ENG_MLN_168h_1

description:
m.MLN.Engerix.168.1
Gene expression in lymph nodes 168hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Engerix B, replicate 1


title: ENG_MLN_168h_5

description:
m.MLN.Engerix.168.5
Gene expression in lymph nodes 168hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Engerix B, replicate 5


title: ENG_MLN_168h_2

description:
m.MLN.Engerix.168.2
Gene expression in lymph nodes 168hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Engerix B, replicate 2


title: IFA_MLN_168h_1

description:
m.MLN.IFA.168.1
Gene expression in lymph nodes 168hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 168hr, IFA, replicate 1


title: ENG_MLN_168h_3

description:
m.MLN.Engerix.168.3
Gene expression in lymph nodes 168hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 168hr, Engerix B, replicate 3


title: TriFLU-MF59_BL_168h_4

description:
m.blood.TriFluMF59.168.4
Gene expression in blood 168hrs after injection with Fluad.

source_name: Peripheral Blood, 168hr, Fluad, replicate 4

value: PBMC


title: TriFLU-MF59_BL_168h_3

description:
m.blood.TriFluMF59.168.3
Gene expression in blood 168hrs after injection with Fluad.

source_name: Peripheral Blood, 168hr, Fluad, replicate 3


title: TriFLU-MF59_BL_168h_5

description:
m.blood.TriFluMF59.168.5
Gene expression in blood 168hrs after injection with Fluad.

source_name: Peripheral Blood, 168hr, Fluad, replicate 5


title: TriFLU-MF59_BL_168h_2

description:
m.blood.TriFluMF59.168.2
Gene expression in blood 168hrs after injection with Fluad.

source_name: Peripheral Blood, 168hr, Fluad, replicate 2


title: TriFLU_BL_168h_5

description:
m.blood.TriFlu.168.5
Gene expression in blood 168hrs after injection with Agrippal.

source_name: Peripheral Blood, 168hr, Agrippal, replicate 5


title: TriFLU_BL_168h_2

description:
m.blood.TriFlu.168.2
Gene expression in blood 168hrs after injection with Agrippal.

source_name: Peripheral Blood, 168hr, Agrippal, replicate 2


title: TriFLU-MF59_BL_168h_1

description:
m.blood.TriFluMF59.168.1
Gene expression in blood 168hrs after injection with Fluad.

source_name: Peripheral Blood, 168hr, Fluad, replicate 1


title: TriFLU_BL_168h_3

description:
m.blood.TriFlu.168.3
Gene expression in blood 168hrs after injection with Agrippal.

source_name: Peripheral Blood, 168hr, Agrippal, replicate 3


title: PolyIC_BL_168h_3

description:
m.blood.PolyIC.168.3
Gene expression in blood 168hrs after injection with Poly I:C.

source_name: Peripheral Blood, 168hr, Poly I:C, replicate 3


title: SAL_BL_168h_1

description:
m.blood.saline.168.1
Gene expression in blood 168hrs after injection with saline.

source_name: Peripheral Blood, 168hr, Saline, replicate 1


title: SAL_BL_168h_2

description:
m.blood.saline.168.2
Gene expression in blood 168hrs after injection with saline.

source_name: Peripheral Blood, 168hr, Saline, replicate 2


title: PolyIC_BL_168h_4

description:
m.blood.PolyIC.168.4
Gene expression in blood 168hrs after injection with Poly I:C.

source_name: Peripheral Blood, 168hr, Poly I:C, replicate 4


title: TriFLU_BL_168h_1

description:
m.blood.TriFlu.168.1
Gene expression in blood 168hrs after injection with Agrippal.

source_name: Peripheral Blood, 168hr, Agrippal, replicate 1


title: SAL_BL_168h_3

description:
m.blood.saline.168.3
Gene expression in blood 168hrs after injection with saline.

source_name: Peripheral Blood, 168hr, Saline, replicate 3


title: PolyIC_BL_168h_5

description:
m.blood.PolyIC.168.5
Gene expression in blood 168hrs after injection with Poly I:C.

source_name: Peripheral Blood, 168hr, Poly I:C, replicate 5


title: PolyIC_BL_168h_2

description:
m.blood.PolyIC.168.2
Gene expression in blood 168hrs after injection with Poly I:C.

source_name: Peripheral Blood, 168hr, Poly I:C, replicate 2


title: SAL_BL_168h_5

description:
m.blood.saline.168.5
Gene expression in blood 168hrs after injection with saline.

source_name: Peripheral Blood, 168hr, Saline, replicate 5


title: TriFLU_BL_168h_4

description:
m.blood.TriFlu.168.4
Gene expression in blood 168hrs after injection with Agrippal.

source_name: Peripheral Blood, 168hr, Agrippal, replicate 4


title: SAL_BL_168h_4

description:
m.blood.saline.168.4
Gene expression in blood 168hrs after injection with saline.

source_name: Peripheral Blood, 168hr, Saline, replicate 4


title: PolyIC_BL_168h_1

description:
m.blood.PolyIC.168.1
Gene expression in blood 168hrs after injection with Poly I:C.

source_name: Peripheral Blood, 168hr, Poly I:C, replicate 1


title: PERT_BL_168h_4

description:
m.blood.Pertussis.168.4
Gene expression in blood 168hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 168hr, Pentavac SD, replicate 4


title: PERT_BL_168h_3

description:
m.blood.Pertussis.168.3
Gene expression in blood 168hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 168hr, Pentavac SD, replicate 3


title: LPS_BL_168h_2

description:
m.blood.LPS.168.2
Gene expression in blood 168hrs after injection with LPS.

source_name: Peripheral Blood, 168hr, LPS, replicate 2


title: LPS_BL_168h_5

description:
m.blood.LPS.168.5
Gene expression in blood 168hrs after injection with LPS.

source_name: Peripheral Blood, 168hr, LPS, replicate 5


title: LPS_BL_168h_4

description:
m.blood.LPS.168.4
Gene expression in blood 168hrs after injection with LPS.

source_name: Peripheral Blood, 168hr, LPS, replicate 4


title: PERT_BL_168h_2

description:
m.blood.Pertussis.168.2
Gene expression in blood 168hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 168hr, Pentavac SD, replicate 2


title: LPS_BL_168h_1

description:
m.blood.LPS.168.1
Gene expression in blood 168hrs after injection with LPS.

source_name: Peripheral Blood, 168hr, LPS, replicate 1


title: IFA_BL_168h_5

description:
m.blood.IFA.168.5
Gene expression in blood 168hrs after injection with IFA.

source_name: Peripheral Blood, 168hr, IFA, replicate 5


title: PERT_BL_168h_1

description:
m.blood.Pertussis.168.1
Gene expression in blood 168hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 168hr, Pentavac SD, replicate 1


title: PERT_BL_168h_5

description:
m.blood.Pertussis.168.5
Gene expression in blood 168hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 168hr, Pentavac SD, replicate 5


title: IFA_BL_168h_4

description:
m.blood.IFA.168.4
Gene expression in blood 168hrs after injection with IFA.

source_name: Peripheral Blood, 168hr, IFA, replicate 4


title: ENG_BL_168h_3

description:
m.blood.Engerix.168.3
Gene expression in blood 168hrs after injection with Engerix B.

source_name: Peripheral Blood, 168hr, Engerix B, replicate 3


title: IFA_BL_168h_2

description:
m.blood.IFA.168.2
Gene expression in blood 168hrs after injection with IFA.

source_name: Peripheral Blood, 168hr, IFA, replicate 2


title: IFA_BL_168h_1

description:
m.blood.IFA.168.1
Gene expression in blood 168hrs after injection with IFA.

source_name: Peripheral Blood, 168hr, IFA, replicate 1


title: ENG_BL_168h_1

description:
m.blood.Engerix.168.1
Gene expression in blood 168hrs after injection with Engerix B.

source_name: Peripheral Blood, 168hr, Engerix B, replicate 1


title: TriFLU-MF59_MU_72h_5

description:
m.muscle.TriFluMF59.72.5
Gene expression in muscle 72hrs after injection with Fluad.

source_name: Muscle, 72hr, Fluad, replicate 5


title: IFA_BL_168h_3

description:
m.blood.IFA.168.3
Gene expression in blood 168hrs after injection with IFA.

source_name: Peripheral Blood, 168hr, IFA, replicate 3


title: ENG_BL_168h_4

description:
m.blood.Engerix.168.4
Gene expression in blood 168hrs after injection with Engerix B.

source_name: Peripheral Blood, 168hr, Engerix B, replicate 4


title: TriFLU-MF59_MU_72h_2

description:
m.muscle.TriFluMF59.72.2
Gene expression in muscle 72hrs after injection with Fluad.

source_name: Muscle, 72hr, Fluad, replicate 2


title: TriFLU_MU_72h_4

description:
m.muscle.TriFlu.72.4
Gene expression in muscle 72hrs after injection with Agrippal.

source_name: Muscle, 72hr, Agrippal, replicate 4


title: ENG_BL_168h_5

description:
m.blood.Engerix.168.5
Gene expression in blood 168hrs after injection with Engerix B.

source_name: Peripheral Blood, 168hr, Engerix B, replicate 5


title: ENG_BL_168h_2

description:
m.blood.Engerix.168.2
Gene expression in blood 168hrs after injection with Engerix B.

source_name: Peripheral Blood, 168hr, Engerix B, replicate 2


title: SAL_MU_72h_4

description:
m.muscle.saline.72.4
Gene expression in muscle 72hrs after injection with saline.

source_name: Muscle, 72hr, Saline, replicate 4


title: SAL_MU_72h_5

description:
m.muscle.saline.72.5
Gene expression in muscle 72hrs after injection with saline.

source_name: Muscle, 72hr, Saline, replicate 5


title: TriFLU-MF59_MU_72h_1

description:
m.muscle.TriFluMF59.72.1
Gene expression in muscle 72hrs after injection with Fluad.

source_name: Muscle, 72hr, Fluad, replicate 1


title: TriFLU_MU_72h_3

description:
m.muscle.TriFlu.72.3
Gene expression in muscle 72hrs after injection with Agrippal.

source_name: Muscle, 72hr, Agrippal, replicate 3


title: TriFLU-MF59_MU_72h_3

description:
m.muscle.TriFluMF59.72.3
Gene expression in muscle 72hrs after injection with Fluad.

source_name: Muscle, 72hr, Fluad, replicate 3


title: LPS_BL_168h_3

description:
m.blood.LPS.168.3
Gene expression in blood 168hrs after injection with LPS.

source_name: Peripheral Blood, 168hr, LPS, replicate 3


title: TriFLU_MU_72h_2

description:
m.muscle.TriFlu.72.2
Gene expression in muscle 72hrs after injection with Agrippal.

source_name: Muscle, 72hr, Agrippal, replicate 2


title: PERT_MU_72h_5

description:
m.muscle.Pertussis.72.5
Gene expression in muscle 72hrs after injection with Pentavac SD.

source_name: Muscle, 72hr, Pentavac SD, replicate 5


title: PolyIC_MU_72h_5

description:
m.muscle.PolyIC.72.5
Gene expression in muscle 72hrs after injection with Poly I:C.

source_name: Muscle, 72hr, Poly I:C, replicate 5


title: PolyIC_MU_72h_1

description:
m.muscle.PolyIC.72.1
Gene expression in muscle 72hrs after injection with Poly I:C.

source_name: Muscle, 72hr, Poly I:C, replicate 1


title: PolyIC_MU_72h_4

description:
m.muscle.PolyIC.72.4
Gene expression in muscle 72hrs after injection with Poly I:C.

source_name: Muscle, 72hr, Poly I:C, replicate 4


title: PolyIC_MU_72h_2

description:
m.muscle.PolyIC.72.2
Gene expression in muscle 72hrs after injection with Poly I:C.

source_name: Muscle, 72hr, Poly I:C, replicate 2


title: PolyIC_MU_72h_3

description:
m.muscle.PolyIC.72.3
Gene expression in muscle 72hrs after injection with Poly I:C.

source_name: Muscle, 72hr, Poly I:C, replicate 3


title: SAL_MU_72h_1

description:
m.muscle.saline.72.1
Gene expression in muscle 72hrs after injection with saline.

source_name: Muscle, 72hr, Saline, replicate 1


title: TriFLU_MU_72h_1

description:
m.muscle.TriFlu.72.1
Gene expression in muscle 72hrs after injection with Agrippal.

source_name: Muscle, 72hr, Agrippal, replicate 1


title: TriFLU-MF59_MU_72h_4

description:
m.muscle.TriFluMF59.72.4
Gene expression in muscle 72hrs after injection with Fluad.

source_name: Muscle, 72hr, Fluad, replicate 4


title: SAL_MU_72h_2

description:
m.muscle.saline.72.2
Gene expression in muscle 72hrs after injection with saline.

source_name: Muscle, 72hr, Saline, replicate 2


title: PERT_MU_72h_4

description:
m.muscle.Pertussis.72.4
Gene expression in muscle 72hrs after injection with Pentavac SD.

source_name: Muscle, 72hr, Pentavac SD, replicate 4


title: PERT_MU_72h_3

description:
m.muscle.Pertussis.72.3
Gene expression in muscle 72hrs after injection with Pentavac SD.

source_name: Muscle, 72hr, Pentavac SD, replicate 3


title: TriFLU_MU_72h_5

description:
m.muscle.TriFlu.72.5
Gene expression in muscle 72hrs after injection with Agrippal.

source_name: Muscle, 72hr, Agrippal, replicate 5


title: PERT_MU_72h_1

description:
m.muscle.Pertussis.72.1
Gene expression in muscle 72hrs after injection with Pentavac SD.

source_name: Muscle, 72hr, Pentavac SD, replicate 1


title: LPS_MU_72h_5

description:
m.muscle.LPS.72.5
Gene expression in muscle 72hrs after injection with LPS.

source_name: Muscle, 72hr, LPS, replicate 5


title: LPS_MU_72h_4

description:
m.muscle.LPS.72.4
Gene expression in muscle 72hrs after injection with LPS.

source_name: Muscle, 72hr, LPS, replicate 4


title: IFA_MU_72h_5

description:
m.muscle.IFA.72.5
Gene expression in muscle 72hrs after injection with IFA.

source_name: Muscle, 72hr, IFA, replicate 5


title: LPS_MU_72h_2

description:
m.muscle.LPS.72.2
Gene expression in muscle 72hrs after injection with LPS.

source_name: Muscle, 72hr, LPS, replicate 2


title: IFA_MU_72h_4

description:
m.muscle.IFA.72.4
Gene expression in muscle 72hrs after injection with IFA.

source_name: Muscle, 72hr, IFA, replicate 4


title: SAL_MU_72h_3

description:
m.muscle.saline.72.3
Gene expression in muscle 72hrs after injection with saline.

source_name: Muscle, 72hr, Saline, replicate 3


title: PERT_MU_72h_2

description:
m.muscle.Pertussis.72.2
Gene expression in muscle 72hrs after injection with Pentavac SD.

source_name: Muscle, 72hr, Pentavac SD, replicate 2


title: IFA_MU_72h_2

description:
m.muscle.IFA.72.2
Gene expression in muscle 72hrs after injection with IFA.

source_name: Muscle, 72hr, IFA, replicate 2


title: LPS_MU_72h_3

description:
m.muscle.LPS.72.3
Gene expression in muscle 72hrs after injection with LPS.

source_name: Muscle, 72hr, LPS, replicate 3


title: IFA_MU_72h_1

description:
m.muscle.IFA.72.1
Gene expression in muscle 72hrs after injection with IFA.

source_name: Muscle, 72hr, IFA, replicate 1


title: ENG_MU_72h_5

description:
m.muscle.Engerix.72.5
Gene expression in muscle 72hrs after injection with Engerix B.

source_name: Muscle, 72hr, Engerix B, replicate 5


title: LPS_MU_72h_1

description:
m.muscle.LPS.72.1
Gene expression in muscle 72hrs after injection with LPS.

source_name: Muscle, 72hr, LPS, replicate 1


title: ENG_MU_72h_2

description:
m.muscle.Engerix.72.2
Gene expression in muscle 72hrs after injection with Engerix B.

source_name: Muscle, 72hr, Engerix B, replicate 2


title: TriFLU-MF59_MLN_72h_4

description:
m.MLN.TriFluMF59.72.4
Gene expression in lymph nodes 72hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Fluad, replicate 4


title: ENG_MU_72h_3

description:
m.muscle.Engerix.72.3
Gene expression in muscle 72hrs after injection with Engerix B.

source_name: Muscle, 72hr, Engerix B, replicate 3


title: TriFLU-MF59_MLN_72h_5

description:
m.MLN.TriFluMF59.72.5
Gene expression in lymph nodes 72hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Fluad, replicate 5


title: TriFLU-MF59_MLN_72h_1

description:
m.MLN.TriFluMF59.72.1
Gene expression in lymph nodes 72hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Fluad, replicate 1


title: IFA_MU_72h_3

description:
m.muscle.IFA.72.3
Gene expression in muscle 72hrs after injection with IFA.

source_name: Muscle, 72hr, IFA, replicate 3


title: TriFLU-MF59_MLN_72h_2

description:
m.MLN.TriFluMF59.72.2
Gene expression in lymph nodes 72hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Fluad, replicate 2


title: TriFLU_MLN_72h_3

description:
m.MLN.TriFlu.72.3
Gene expression in lymph nodes 72hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Agrippal, replicate 3


title: TriFLU_MLN_72h_4

description:
m.MLN.TriFlu.72.4
Gene expression in lymph nodes 72hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Agrippal, replicate 4


title: TriFLU-MF59_MLN_72h_3

description:
m.MLN.TriFluMF59.72.3
Gene expression in lymph nodes 72hrs after injection with Fluad.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Fluad, replicate 3


title: ENG_MU_72h_4

description:
m.muscle.Engerix.72.4
Gene expression in muscle 72hrs after injection with Engerix B.

source_name: Muscle, 72hr, Engerix B, replicate 4


title: ENG_MU_72h_1

description:
m.muscle.Engerix.72.1
Gene expression in muscle 72hrs after injection with Engerix B.

source_name: Muscle, 72hr, Engerix B, replicate 1


title: TriFLU_MLN_72h_5

description:
m.MLN.TriFlu.72.5
Gene expression in lymph nodes 72hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Agrippal, replicate 5


title: PolyIC_MLN_72h_5

description:
m.MLN.PolyIC.72.5
Gene expression in lymph nodes 72hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Poly I:C, replicate 5


title: TriFLU_MLN_72h_1

description:
m.MLN.TriFlu.72.1
Gene expression in lymph nodes 72hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Agrippal, replicate 1


title: PolyIC_MLN_72h_4

description:
m.MLN.PolyIC.72.4
Gene expression in lymph nodes 72hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Poly I:C, replicate 4


title: SAL_MLN_72h_5

description:
m.MLN.saline.72.5
Gene expression in lymph nodes 72hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Saline, replicate 5


title: TriFLU_MLN_72h_2

description:
m.MLN.TriFlu.72.2
Gene expression in lymph nodes 72hrs after injection with Agrippal.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Agrippal, replicate 2


title: SAL_MLN_72h_3

description:
m.MLN.saline.72.3
Gene expression in lymph nodes 72hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Saline, replicate 3


title: PERT_MLN_72h_4

description:
m.MLN.Pertussis.72.4
Gene expression in lymph nodes 72hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Pentavac SD, replicate 4


title: SAL_MLN_72h_4

description:
m.MLN.saline.72.4
Gene expression in lymph nodes 72hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Saline, replicate 4


title: SAL_MLN_72h_1

description:
m.MLN.saline.72.1
Gene expression in lymph nodes 72hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Saline, replicate 1


title: PolyIC_MLN_72h_3

description:
m.MLN.PolyIC.72.3
Gene expression in lymph nodes 72hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Poly I:C, replicate 3


title: PolyIC_MLN_72h_2

description:
m.MLN.PolyIC.72.2
Gene expression in lymph nodes 72hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Poly I:C, replicate 2


title: LPS_MLN_72h_1

description:
m.MLN.LPS.72.1
Gene expression in lymph nodes 72hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 72hr, LPS, replicate 1


title: PERT_MLN_72h_1

description:
m.MLN.Pertussis.72.1
Gene expression in lymph nodes 72hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Pentavac SD, replicate 1


title: LPS_MLN_72h_5

description:
m.MLN.LPS.72.5
Gene expression in lymph nodes 72hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 72hr, LPS, replicate 5


title: IFA_MLN_72h_5

description:
m.MLN.IFA.72.5
Gene expression in lymph nodes 72hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 72hr, IFA, replicate 5


title: LPS_MLN_72h_3

description:
m.MLN.LPS.72.3
Gene expression in lymph nodes 72hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 72hr, LPS, replicate 3


title: PERT_MLN_72h_2

description:
m.MLN.Pertussis.72.2
Gene expression in lymph nodes 72hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Pentavac SD, replicate 2


title: PolyIC_MLN_72h_1

description:
m.MLN.PolyIC.72.1
Gene expression in lymph nodes 72hrs after injection with Poly I:C.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Poly I:C, replicate 1


title: PERT_MLN_72h_3

description:
m.MLN.Pertussis.72.3
Gene expression in lymph nodes 72hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Pentavac SD, replicate 3


title: LPS_MLN_72h_4

description:
m.MLN.LPS.72.4
Gene expression in lymph nodes 72hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 72hr, LPS, replicate 4


title: IFA_MLN_72h_1

description:
m.MLN.IFA.72.1
Gene expression in lymph nodes 72hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 72hr, IFA, replicate 1


title: ENG_MLN_72h_5

description:
m.MLN.Engerix.72.5
Gene expression in lymph nodes 72hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Engerix B, replicate 5


title: SAL_MLN_72h_2

description:
m.MLN.saline.72.2
Gene expression in lymph nodes 72hrs after injection with saline.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Saline, replicate 2


title: PERT_MLN_72h_5

description:
m.MLN.Pertussis.72.5
Gene expression in lymph nodes 72hrs after injection with Pentavac SD.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Pentavac SD, replicate 5


title: IFA_MLN_72h_4

description:
m.MLN.IFA.72.4
Gene expression in lymph nodes 72hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 72hr, IFA, replicate 4


title: IFA_MLN_72h_2

description:
m.MLN.IFA.72.2
Gene expression in lymph nodes 72hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 72hr, IFA, replicate 2


title: LPS_MLN_72h_2

description:
m.MLN.LPS.72.2
Gene expression in lymph nodes 72hrs after injection with LPS.

source_name: draining medial iliac lymph nodes (MLN), 72hr, LPS, replicate 2


title: TriFLU-MF59_BL_72h_3

description:
m.blood.TriFluMF59.72.3
Gene expression in blood 72hrs after injection with Fluad.

source_name: Peripheral Blood, 72hr, Fluad, replicate 3


title: ENG_MLN_72h_4

description:
m.MLN.Engerix.72.4
Gene expression in lymph nodes 72hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Engerix B, replicate 4


title: IFA_MLN_72h_3

description:
m.MLN.IFA.72.3
Gene expression in lymph nodes 72hrs after injection with IFA.

source_name: draining medial iliac lymph nodes (MLN), 72hr, IFA, replicate 3


title: ENG_MLN_72h_1

description:
m.MLN.Engerix.72.1
Gene expression in lymph nodes 72hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Engerix B, replicate 1


title: TriFLU-MF59_BL_72h_4

description:
m.blood.TriFluMF59.72.4
Gene expression in blood 72hrs after injection with Fluad.

source_name: Peripheral Blood, 72hr, Fluad, replicate 4


title: TriFLU_BL_72h_5

description:
m.blood.TriFlu.72.5
Gene expression in blood 72hrs after injection with Agrippal.

source_name: Peripheral Blood, 72hr, Agrippal, replicate 5


title: ENG_MLN_72h_3

description:
m.MLN.Engerix.72.3
Gene expression in lymph nodes 72hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Engerix B, replicate 3


title: TriFLU_BL_72h_3

description:
m.blood.TriFlu.72.3
Gene expression in blood 72hrs after injection with Agrippal.

source_name: Peripheral Blood, 72hr, Agrippal, replicate 3


title: ENG_MLN_72h_2

description:
m.MLN.Engerix.72.2
Gene expression in lymph nodes 72hrs after injection with Engerix B.

source_name: draining medial iliac lymph nodes (MLN), 72hr, Engerix B, replicate 2


title: TriFLU-MF59_BL_72h_1

description:
m.blood.TriFluMF59.72.1
Gene expression in blood 72hrs after injection with Fluad.

source_name: Peripheral Blood, 72hr, Fluad, replicate 1


title: SAL_BL_72h_5

description:
m.blood.saline.72.5
Gene expression in blood 72hrs after injection with saline.

source_name: Peripheral Blood, 72hr, Saline, replicate 5


title: PolyIC_BL_72h_4

description:
m.blood.PolyIC.72.4
Gene expression in blood 72hrs after injection with Poly I:C.

source_name: Peripheral Blood, 72hr, Poly I:C, replicate 4


title: PolyIC_BL_72h_3

description:
m.blood.PolyIC.72.3
Gene expression in blood 72hrs after injection with Poly I:C.

source_name: Peripheral Blood, 72hr, Poly I:C, replicate 3


title: TriFLU-MF59_BL_72h_5

description:
m.blood.TriFluMF59.72.5
Gene expression in blood 72hrs after injection with Fluad.

source_name: Peripheral Blood, 72hr, Fluad, replicate 5


title: TriFLU_BL_72h_4

description:
m.blood.TriFlu.72.4
Gene expression in blood 72hrs after injection with Agrippal.

source_name: Peripheral Blood, 72hr, Agrippal, replicate 4


title: SAL_BL_72h_3

description:
m.blood.saline.72.3
Gene expression in blood 72hrs after injection with saline.

source_name: Peripheral Blood, 72hr, Saline, replicate 3


title: SAL_BL_72h_2

description:
m.blood.saline.72.2
Gene expression in blood 72hrs after injection with saline.

source_name: Peripheral Blood, 72hr, Saline, replicate 2


title: SAL_BL_72h_1

description:
m.blood.saline.72.1
Gene expression in blood 72hrs after injection with saline.

source_name: Peripheral Blood, 72hr, Saline, replicate 1


title: SAL_BL_72h_4

description:
m.blood.saline.72.4
Gene expression in blood 72hrs after injection with saline.

source_name: Peripheral Blood, 72hr, Saline, replicate 4


title: TriFLU-MF59_BL_72h_2

description:
m.blood.TriFluMF59.72.2
Gene expression in blood 72hrs after injection with Fluad.

source_name: Peripheral Blood, 72hr, Fluad, replicate 2


title: PolyIC_BL_72h_2

description:
m.blood.PolyIC.72.2
Gene expression in blood 72hrs after injection with Poly I:C.

source_name: Peripheral Blood, 72hr, Poly I:C, replicate 2


title: PolyIC_BL_72h_5

description:
m.blood.PolyIC.72.5
Gene expression in blood 72hrs after injection with Poly I:C.

source_name: Peripheral Blood, 72hr, Poly I:C, replicate 5


title: PolyIC_BL_72h_1

description:
m.blood.PolyIC.72.1
Gene expression in blood 72hrs after injection with Poly I:C.

source_name: Peripheral Blood, 72hr, Poly I:C, replicate 1


title: PERT_BL_72h_4

description:
m.blood.Pertussis.72.4
Gene expression in blood 72hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 72hr, Pentavac SD, replicate 4


title: TriFLU_BL_72h_1

description:
m.blood.TriFlu.72.1
Gene expression in blood 72hrs after injection with Agrippal.

source_name: Peripheral Blood, 72hr, Agrippal, replicate 1


title: PERT_BL_72h_1

description:
m.blood.Pertussis.72.1
Gene expression in blood 72hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 72hr, Pentavac SD, replicate 1


title: PERT_BL_72h_3

description:
m.blood.Pertussis.72.3
Gene expression in blood 72hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 72hr, Pentavac SD, replicate 3


title: PERT_BL_72h_5

description:
m.blood.Pertussis.72.5
Gene expression in blood 72hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 72hr, Pentavac SD, replicate 5


title: IFA_BL_72h_5

description:
m.blood.IFA.72.5
Gene expression in blood 72hrs after injection with IFA.

source_name: Peripheral Blood, 72hr, IFA, replicate 5


title: IFA_BL_72h_2

description:
m.blood.IFA.72.2
Gene expression in blood 72hrs after injection with IFA.

source_name: Peripheral Blood, 72hr, IFA, replicate 2


title: LPS_BL_72h_4

description:
m.blood.LPS.72.4
Gene expression in blood 72hrs after injection with LPS.

source_name: Peripheral Blood, 72hr, LPS, replicate 4


title: PERT_BL_72h_2

description:
m.blood.Pertussis.72.2
Gene expression in blood 72hrs after injection with Pentavac SD.

source_name: Peripheral Blood, 72hr, Pentavac SD, replicate 2


title: IFA_BL_72h_1

description:
m.blood.IFA.72.1
Gene expression in blood 72hrs after injection with IFA.

source_name: Peripheral Blood, 72hr, IFA, replicate 1


title: IFA_BL_72h_3

description:
m.blood.IFA.72.3
Gene expression in blood 72hrs after injection with IFA.

source_name: Peripheral Blood, 72hr, IFA, replicate 3


title: LPS_BL_72h_1

description:
m.blood.LPS.72.1
Gene expression in blood 72hrs after injection with LPS.

source_name: Peripheral Blood, 72hr, LPS, replicate 1


title: LPS_BL_72h_3

description:
m.blood.LPS.72.3
Gene expression in blood 72hrs after injection with LPS.

source_name: Peripheral Blood, 72hr, LPS, replicate 3


title: LPS_BL_72h_2

description:
m.blood.LPS.72.2
Gene expression in blood 72hrs after injection with LPS.

source_name: Peripheral Blood, 72hr, LPS, replicate 2


title: IFA_BL_72h_4

description:
m.blood.IFA.72.4
Gene expression in blood 72hrs after injection with IFA.

source_name: Peripheral Blood, 72hr, IFA, replicate 4


title: ENG_BL_72h_5

description:
m.blood.Engerix.72.5
Gene expression in blood 72hrs after injection with Engerix B.

source_name: Peripheral Blood, 72hr, Engerix B, replicate 5


title: ENG_BL_72h_3

description:
m.blood.Engerix.72.3
Gene expression in blood 72hrs after injection with Engerix B.

source_name: Peripheral Blood, 72hr, Engerix B, replicate 3


title: TriFLU-MF59_MU_48h_2

description:
m.muscle.TriFluMF59.48.2
Gene expression in muscle 48hrs after injection with Fluad.

source_name: Muscle, 48hr, Fluad, replicate 2


title: ENG_BL_72h_1

description:
m.blood.Engerix.72.1
Gene expression in blood 72hrs after injection with Engerix B.

source_name: Peripheral Blood, 72hr, Engerix B, replicate 1


title: TriFLU-MF59_MU_48h_3

description:
m.muscle.TriFluMF59.48.3
Gene expression in muscle 48hrs after injection with Fluad.

source_name: Muscle, 48hr, Fluad, replicate 3


title: TriFLU-MF59_MU_48h_5

description:
m.muscle.TriFluMF59.48.5
Gene expression in muscle 48hrs after injection with Fluad.

source_name: Muscle, 48hr, Fluad, replicate 5


title: ENG_BL_72h_4

description:
m.blood.Engerix.72.4
Gene expression in blood 72hrs after injection with Engerix B.

source_name: Peripheral Blood, 72hr, Engerix B, replicate 4


title: TriFLU_MU_48h_4

description:
m.muscle.TriFlu.48.4
Gene expression in muscle 48hrs after injection with Agrippal.

source_name: Muscle, 48hr, Agrippal, replicate 4


title: TriFLU_MU_48h_2

description:
m.muscle.TriFlu.48.2
Gene expression in muscle 48hrs after injection with Agrippal.

source_name: Muscle, 48hr, Agrippal, replicate 2


title: TriFLU-MF59_MU_48h_4

description:
m.muscle.TriFluMF59.48.4
Gene expression in muscle 48hrs after injection with Fluad.

source_name: Muscle, 48hr, Fluad, replicate 4


title: TriFLU_MU_48h_5

description:
m.muscle.TriFlu.48.5
Gene expression in muscle 48hrs after injection with Agrippal.

source_name: Muscle, 48hr, Agrippal, replicate 5


title: TriFLU_MU_48h_1

description:
m.muscle.TriFlu.48.1
Gene expression in muscle 48hrs after injection with Agrippal.

source_name: Muscle, 48hr, Agrippal, replicate 1


title: ENG_BL_72h_2

description:
m.blood.Engerix.72.2
Gene expression in blood 72hrs after injection with Engerix B.

source_name: Peripheral Blood, 72hr, Engerix B, replicate 2


title: TriFLU-MF59_MU_48h_1

description:
m.muscle.TriFluMF59.48.1
Gene expression in muscle 48hrs after injection with Fluad.

source_name: Muscle, 48hr, Fluad, replicate 1


title: TriFLU_MU_48h_3

description:
m.muscle.TriFlu.48.3
Gene expression in muscle 48hrs after injection with Agrippal.

source_name: Muscle, 48hr, Agrippal, replicate 3


title: SAL_MU_48h_5

description:
m.muscle.saline.48.5
Gene expression in muscle 48hrs after injection with saline.

source_name: Muscle, 48hr, Saline, replicate 5


title: SAL_MU_48h_4

description:
m.muscle.saline.48.4
Gene expression in muscle 48hrs after injection with saline.

source_name: Muscle, 48hr, Saline, replicate 4


title: LPS_BL_72h_5

description:
m.blood.LPS.72.5
Gene expression in blood 72hrs after injection with LPS.

source_name: Peripheral Blood, 72hr, LPS, replicate 5


title: SAL_MU_48h_3

description:
m.muscle.saline.48.3
Gene expression in muscle 48hrs after injection with saline.

source_name: Muscle, 48hr, Saline, replicate 3