title: 934S_MSCB-011


title: 933S_MSCB-178

status: Public on Mar 12 2019

type: SRA

city: Barcelona

first: Gustavo

last: Rodriguez-Esteban

state: Catalonia

address: C. Baldiri Reixac, 4; Barcelona Science Park

department: Development

country: Spain

institute: Centro Nacional de Análisis Genómico

library_source: transcriptomic

data_processing:
Primary data analysis was carried out with the standard Illumina pipeline following the manufacturer's protocol. Illumina Real-Time Analysis (RTA) 1.18.66.3 software used for basecalling.
Sequenced reads were filtered for low-complexity or low-quality sequence.
MARS-Seq libraries were mapped as single-end reads with the GEMTools 1.7.0 RNA pipeline on the mouse  genome reference.
For MARS-seq samples, gene quantification was performed using UMI corrected transcript information to correct for amplification biases.
Genome_build: Assembly GRCm38. Gencode release M8.
Supplementary_files_format_and_content: Tab-separated values (.tsv) files containing gene expression values (rows) as UMI counts for each cell (columns).

molecule: polyA RNA

organism: Mus musculus

source_name: bone marrow

growth_protocol: We used 'reprogrammable mice' containing a doxycycline-inducible OSKM cassette and thetetracycline transactivator. pre-B cells were isolated from 8- to 16-week-old female mice. Mice were housed in standard cages under 12-h light–dark cycles and fed ad libitum with a standard chow diet.    After isolation, pre-B cells were grown in RPMI medium supplemented with 10% FBS and 10ng/ml IL-7 (Peprotech), L-glutamine, nonessential amino acids, β-mercaptoethanol (Life Technologies) as well as penicillin/streptomycin. All cell lines were routinely tested for mycoplasma contamination.

extract_protocol:
CD19+ pre-B cells were isolated from the bone marrow of these mice using monoclonal antibody to CD19 (clone 1D3, BD Pharmingen #553784) and MACS sorting (Miltenyi Biotech). Cell purity was confirmed to be >98% CD19+ by FACS using an LSRII machine (BD).
To construct single cell libraries from polyA-tailed RNA, we applied massively parallel single-cell RNA sequencing (MARS-Seq; Jaitin et al., Science 2014).  This methodology generates paired-end reads where read 1 contains the transcript sequence and read 2 the cell and UMI barcodes. Briefly, single cells were FACS-sorted into 384-well plates, containing lysis buffer and reverse-transcription (RT) primers. The RT primers contained the single cell barcodes and unique molecular identifiers (UMIs) for subsequent de-multiplexing and correction for amplification biases, respectively.

treatment_protocol: For transdifferentiation pre-B cells were infected with C/EBPα-ER-hCD4 retrovirus produced by the PlatE retroviral packaging cell line (Cell Biolabs, # RV-101). The cells were expanded for 48hrs on Mitomycin C-inactivated S17 feeders grown in RPMI medium supplemented with 10 ng/mL each of IL-7 (Peprotech) and hCD4+ were sorted (FACSaria, BD). For transdifferentiation C/EBPα was induced by treating the cells with 100 nM β-Estradiol (E2) in medium supplemented with 10 ng/mL each of IL-7 (Peprotech), IL-3 (Peprotech) and human colony-stimulating factor 1 (hCSF-1). For reprogramming hCD4+ cells were plated at 500 cells/cm2 in gelatinized plates (12 wells) on irradiated MEF feeders in RPMI medium and pre-treated for 18h with E2 to induce C/EBPα. After E2 washout the cultures were switched to serum-free N2B27 medium supplemented with 10 ng/ml IL-4, IL-7 and IL-15 at 2 ng/ml and treated with 2 μg/ml of doxycycline to activate OSKM. From day 2 onwards the N2B27 medium was supplemented with 20% KSR (Life Technologies), 3 μM CHIR99021 and 1uM PD0325901(2i medium).

tag: cell type

value: pre-B cell

tag: treatment

tag: induction

value: C/EBPα

tag: fate

tag: time point


title: 933S_MSCB-179


title: 933S_MSCB-176


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title: 933S_MSCB-173


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title: 934S_MSCB-047

value: transdifferentiation

value: iMac


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title: 678T_MSCB-161


title: 678T_MSCB-164


title: 678T_MSCB-163


title: 678T_MSCB-159


title: 678T_MSCB-158


title: 678T_MSCB-160


title: 678T_MSCB-156


title: 678T_MSCB-179


title: 678T_MSCB-154


title: 678T_MSCB-153


title: 678T_MSCB-155


title: 678T_MSCB-152


title: 678T_MSCB-150


title: 678T_MSCB-149


title: 678T_MSCB-151


title: 678T_MSCB-148


title: 678T_MSCB-147


title: 678T_MSCB-145


title: 678T_MSCB-146


title: 678T_MSCB-168


title: 678T_MSCB-140


title: 678T_MSCB-141


title: 678T_MSCB-138


title: 678T_MSCB-142


title: 678T_MSCB-157


title: 678T_MSCB-134


title: 678T_MSCB-131


title: 678T_MSCB-137


title: 678T_MSCB-135


title: 678T_MSCB-133


title: 678T_MSCB-136


title: 678T_MSCB-132


title: 678T_MSCB-129


title: 678T_MSCB-130


title: 678T_MSCB-144


title: 678T_MSCB-125


title: 678T_MSCB-128


title: 678T_MSCB-127


title: 678T_MSCB-123


title: 678T_MSCB-124


title: 678T_MSCB-143


title: 678T_MSCB-122


title: 678T_MSCB-119


title: 678T_MSCB-126


title: 678T_MSCB-139


title: 678T_MSCB-118


title: 678T_MSCB-117


title: 678T_MSCB-116


title: 678T_MSCB-120


title: 678T_MSCB-115


title: 678T_MSCB-112


title: 678T_MSCB-113


title: 678T_MSCB-114


title: 678T_MSCB-121


title: 678T_MSCB-111


title: 678T_MSCB-110


title: 678T_MSCB-108


title: 678T_MSCB-104


title: 678T_MSCB-105


title: 678T_MSCB-107


title: 678T_MSCB-109


title: 678T_MSCB-103


title: 678T_MSCB-102


title: 678T_MSCB-099


title: 678T_MSCB-098


title: 678T_MSCB-101


title: 678T_MSCB-096


title: 678T_MSCB-100


title: 678T_MSCB-097


title: 678T_MSCB-094


title: 678T_MSCB-095


title: 678T_MSCB-093


title: 678T_MSCB-089


title: 678T_MSCB-088


title: 678T_MSCB-091


title: 678T_MSCB-090


title: 678T_MSCB-086


title: 678T_MSCB-085


title: 678T_MSCB-082


title: 678T_MSCB-106


title: 678T_MSCB-081


title: 678T_MSCB-080


title: 678T_MSCB-075


title: 678T_MSCB-084


title: 678T_MSCB-074


title: 678T_MSCB-079


title: 678T_MSCB-078


title: 678T_MSCB-076


title: 678T_MSCB-077


title: 678T_MSCB-073


title: 678T_MSCB-072


title: 678T_MSCB-067


title: 678T_MSCB-092


title: 678T_MSCB-070


title: 678T_MSCB-087


title: 678T_MSCB-071


title: 678T_MSCB-068


title: 678T_MSCB-065


title: 678T_MSCB-061


title: 678T_MSCB-064


title: 678T_MSCB-063


title: 678T_MSCB-060


title: 678T_MSCB-083


title: 678T_MSCB-058


title: 678T_MSCB-059


title: 678T_MSCB-062


title: 678T_MSCB-056


title: 678T_MSCB-055


title: 678T_MSCB-053


title: 678T_MSCB-069


title: 678T_MSCB-054


title: 678T_MSCB-047


title: 678T_MSCB-049


title: 678T_MSCB-051


title: 678T_MSCB-048


title: 678T_MSCB-046


title: 678T_MSCB-066


title: 678T_MSCB-045


title: 678T_MSCB-050


title: 678T_MSCB-044


title: 678T_MSCB-052


title: 678T_MSCB-043


title: 678T_MSCB-041


title: 678T_MSCB-042


title: 678T_MSCB-040


title: 678T_MSCB-039


title: 678T_MSCB-035


title: 678T_MSCB-037


title: 678T_MSCB-036


title: 678T_MSCB-057


title: 678T_MSCB-034


title: 678T_MSCB-033


title: 678T_MSCB-031


title: 678T_MSCB-029


title: 678T_MSCB-038


title: 678T_MSCB-028


title: 678T_MSCB-030


title: 678T_MSCB-026


title: 678T_MSCB-025


title: 678T_MSCB-023


title: 678T_MSCB-021


title: 678T_MSCB-020


title: 678T_MSCB-027


title: 678T_MSCB-024


title: 678T_MSCB-022


title: 678T_MSCB-018


title: 678T_MSCB-016


title: 678T_MSCB-019


title: 678T_MSCB-014


title: 678T_MSCB-013


title: 678T_MSCB-011


title: 678T_MSCB-015


title: 678T_MSCB-012


title: 678T_MSCB-009


title: 678T_MSCB-008


title: 678T_MSCB-032


title: 678T_MSCB-010


title: 678T_MSCB-007


title: 678T_MSCB-006


title: 678T_MSCB-005


title: 678T_MSCB-002


title: 678T_MSCB-003


title: 678T_MSCB-004


title: 678T_MSCB-001


title: 677T_MSCB-192

value: reprogramming

value: OSKM

value: iPSCs

value: day 4


title: 677T_MSCB-191


title: 678T_MSCB-017


title: 677T_MSCB-190


title: 677T_MSCB-189


title: 677T_MSCB-186


title: 677T_MSCB-188


title: 677T_MSCB-184


title: 677T_MSCB-182


title: 677T_MSCB-183


title: 23 Fast.p110beta.WT

city: Boston

first: Hui

last: Pan

address: 1 Joslin Place

department: Bioinformatics and Biostatistics Core

country: USA

institute: Joslin Diabetes Center

description:
counts_table.csv
TRA00051872

data_processing:
Reads were aligned to the mouse genome using STAR aligner.
Reads were counted with Subread featureCounts.
Genome_build: GRCm38
Supplementary_files_format_and_content: CSV file contains read counts.

molecule: total RNA

source_name: Skeletal muscle

extract_protocol:
Total RNA was extracted from tissues using Trizol.
Library for RNA-Seq were prepared using NEBNext mRNA Sample Prep Master Mix kit (NEB), and HTG EdgeSeq mRNA sequence analysis was performed by BioPolymers Facility at Harvard Medical School.

value: Fast

tag: strain

tag: Sex

value: male

tag: genotype


title: 25 Fast.p110beta.WT

description:
counts_table.csv
TRA00051874


title: 22 Fed.p110beta.KO

description:
counts_table.csv
TRA00051871

value: Fed


title: 27 Fast.p110beta.KO

description:
counts_table.csv
TRA00051876


title: 26 Fast.p110beta.KO

description:
counts_table.csv
TRA00051875


title: 28 Fast.p110beta.KO

description:
counts_table.csv
TRA00051877


title: 19 Fed.p110beta.KO

description:
counts_table.csv
TRA00051868


title: 24 Fast.p110beta.WT

description:
counts_table.csv
TRA00051873


title: 18 Fed.p110beta.WT

description:
counts_table.csv
TRA00051867


title: 21 Fed.p110beta.KO

description:
counts_table.csv
TRA00051870


title: 20 Fed.p110beta.KO

description:
counts_table.csv
TRA00051869


title: 15 Fast.p110alpha.KO

description:
counts_table.csv
TRA00051863


title: 13 Fast.p110alpha.KO

description:
counts_table.csv
TRA00051861


title: 17 Fed.p110beta.WT

description:
counts_table.csv
TRA00051866


title: 11 Fast.p110alpha.WT

description:
counts_table.csv
TRA00051859


title: 12 Fast.p110alpha.WT

description:
counts_table.csv
TRA00051860


title: 10 Fast.p110alpha.WT

description:
counts_table.csv
TRA00051858


title: 677T_MSCB-187


title: 677T_MSCB-185


title: 9 Fast.p110alpha.WT

description:
counts_table.csv
TRA00051857


title: 29 Fast.p110beta.KO

description:
counts_table.csv
TRA00051878


title: 8 Fed.p110alpha.KO

description:
counts_table.csv
TRA00051856


title: 6 Fed.p110alpha.KO

description:
counts_table.csv
TRA00051854


title: 7 Fed.p110alpha.KO

description:
counts_table.csv
TRA00051855


title: 4 Fed.p110alpha.WT

description:
counts_table.csv
TRA00051852


title: 3 Fed.p110alpha.WT

description:
counts_table.csv
TRA00051851


title: 2 Fed.p110alpha.WT

description:
counts_table.csv
TRA00051850


title: 16 Fed.p110beta.WT

description:
counts_table.csv
TRA00051865


title: 1 Fed.p110alpha.WT

description:
counts_table.csv
TRA00051849


title: 14 Fast.p110alpha.KO

description:
counts_table.csv
TRA00051862


title: OHC_181

city: Philadelphia

first: Paul

middle: T

last: Ranum

state: PA

address: 3501 Civic Center Blvd.

department: Center for Cellular and Molecular Therapy

institute: The Children's Hospital of Philadelphia

description: Single-Cell SmartSeq2 Illumina

data_processing:
For Illumina data processing begin with R1.gz and R2.gz paired end read files for each sample.  Process each sample individually.
Perform Kallisto pseudoalignment to the mm10 transcriptome to generate gene expression .tsv file for each sample.
Perform Star alignment to the mm10 genome to generate .sam output for each cell.
Use samtools view to convert the .sam file to .bam format
Use samtools sort tool to sort the .bam file
Corresponding publication includes extensive discussion of mRNA transcript structure and splicing.   Transcript structure features are visualized using .bam files.  The .bam files can be regenerated using the provided raw data files (fastq).
Genome_build: mm10
Supplementary_files_format_and_content: Output files are in .tsv format.

source_name: Cochlea

extract_protocol:
Individual cells were dissociated from mouse cochlear tissue using a collagenase digestion and gentle tituration.  Cells were then isolated using pulled glass micropipettes, washed to remove extracellular contaminants and re-isolated.
Single cell reverse transciption and PCR amplification was performed using Smartseq2

tag: age

tag: background

value: OHC


title: OHC_177

description: Single-Cell SmartSeq2 Illumina


title: OHC_183

description: Single-Cell SmartSeq2 Illumina


title: OHC_176

description: Single-Cell SmartSeq2 Illumina


title: IHC_185

description: Single-Cell SmartSeq2 Illumina

value: IHC


title: OHC_191

description: Single-Cell SmartSeq2 Illumina


title: OHC_178

description: Single-Cell SmartSeq2 Illumina


title: IHC_188

description:
Single-Cell SmartSeq2 Illumina
NOTE: Raw file (R1) is truncated (the full version is not available).
The truncated raw file was used in the analysis presented in the publication.


title: OHC_184

description: Single-Cell SmartSeq2 Illumina


title: IHC_172


title: OHC_175

description:
Single-Cell SmartSeq2 Illumina
NOTE: Raw file (R2) is truncated (the full version is not available).
The truncated raw file was used in the analysis presented in the publication.


title: OHC_174

description: Single-Cell SmartSeq2 Illumina


title: OHC_173

description: Single-Cell SmartSeq2 Illumina


title: OHC_169


title: IHC_171


title: 5 Fed.p110alpha.KO

description:
counts_table.csv
TRA00051853


title: OHC_168


title: OHC_166

description: Single-Cell SmartSeq2 Illumina


title: OHC_167

description: Single-Cell SmartSeq2 Illumina


title: OHC_164

description: Single-Cell SmartSeq2 Illumina


title: OHC_160

description: Single-Cell SmartSeq2 Illumina


title: OHC_163

description: Single-Cell SmartSeq2 Illumina


title: OHC_158

description: Single-Cell SmartSeq2 Illumina


title: OHC_179

description: Single-Cell SmartSeq2 Illumina


title: IHC_161

description: Single-Cell SmartSeq2 Illumina


title: OHC_192

description: Single-Cell SmartSeq2 Illumina


title: OHC_156

description: Single-Cell SmartSeq2 Illumina


title: OHC_157

description: Single-Cell SmartSeq2 Illumina


title: OHC_154

description: Single-Cell SmartSeq2 Illumina


title: OHC_139

description: Single-Cell SmartSeq2 Illumina


title: OHC_162

description: Single-Cell SmartSeq2 Illumina


title: OHC_142

description: Single-Cell SmartSeq2 Illumina


title: OHC_138

description: Single-Cell SmartSeq2 Illumina


title: IHC_136

description: Single-Cell SmartSeq2 Illumina


title: OHC_143

description: Single-Cell SmartSeq2 Illumina


title: OHC_135

description: Single-Cell SmartSeq2 Illumina


title: OHC_134

description: Single-Cell SmartSeq2 Illumina


title: OHC_129

description: Single-Cell SmartSeq2 Illumina


title: OHC_130

description: Single-Cell SmartSeq2 Illumina


title: IHC_133

description: Single-Cell SmartSeq2 Illumina


title: IHC_128

description: Single-Cell SmartSeq2 Illumina


title: 939S_MSCB-191

value: day 8


title: OHC_137

description: Single-Cell SmartSeq2 Illumina


title: TRIM25-iCLIP-seq

city: hangzhou

first: Hongyu

last: Lin

address: Zijingang Campus of Zhejiang University, 866 Yuhangtang Road, Xihu District

country: China

institute: Zhejiang University School of Medicine

description: Sample 3

data_processing:
Primary sequencing data that produced by Illumina HiSeq 2500 , called as raw reads, is subjected to quality control (QC) that determine if a resequencing step is needed.
Reads preprocessing，mapping and CITS analysis with raw data followed CLIP Tool Kit pubulished in the article named CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data.
Genome build: mm10
processed data files format and content: bed

source_name: RAW264.7 cells

growth_protocol: RAW264.7 cells were cultured in DMEM (Gibco) supplemented with 10% fetal bovine serum (FBS).

extract_protocol:
iCLIP was performed usign anti-TRIM25 antibody, and the isolated RNA was further processed into iCLIP-seq library and then standard illumina sequencing analysis.
RNA libraries were prepared for sequencing using standard Illumina protocols.

treatment_protocol: RAW264.7 cells were infected with VSV for 8 hr and then were crosslinked with UV at 254 nm for 300 mJ/cm2.

tag: cell line

value: murine macrophage cell line

tag: passages

tag: rip antibody

tag: infection

value: RAW264.7 cells upon VSV infection for 8 hr


title: 939S_MSCB-190


title: 939S_MSCB-192


title: 939S_MSCB-188


title: RIG-I-iCLIP-seq

description: Sample 4

extract_protocol:
iCLIP was performed usign anti-RIG-I antibody, and the isolated RNA was further processed into iCLIP-seq library and then standard illumina sequencing analysis.
RNA libraries were prepared for sequencing using standard Illumina protocols.

value: RIG-I (Cell Signaling technology,D14G6, 3743BC)


title: 939S_MSCB-187

value: pre-B cell


title: 939S_MSCB-184


title: 939S_MSCB-182


title: 939S_MSCB-189


title: 939S_MSCB-186


title: 939S_MSCB-183


title: 939S_MSCB-185


title: OHC_159

description: Single-Cell SmartSeq2 Illumina


title: 939S_MSCB-180


title: 939S_MSCB-181


title: 939S_MSCB-179


title: 939S_MSCB-178


title: 939S_MSCB-177


title: 939S_MSCB-176


title: 939S_MSCB-175


title: 939S_MSCB-174


title: 939S_MSCB-173


title: 939S_MSCB-172


title: 939S_MSCB-171


title: 939S_MSCB-170


title: 939S_MSCB-167


title: 939S_MSCB-169


title: 939S_MSCB-168


title: 939S_MSCB-163


title: 939S_MSCB-161


title: 939S_MSCB-164


title: 939S_MSCB-165


title: 939S_MSCB-162


title: 939S_MSCB-158


title: 939S_MSCB-156


title: 939S_MSCB-159


title: 939S_MSCB-166


title: 939S_MSCB-152


title: 939S_MSCB-153


title: 939S_MSCB-148


title: 939S_MSCB-157


title: 939S_MSCB-151


title: 939S_MSCB-150


title: 939S_MSCB-147


title: 939S_MSCB-145


title: 939S_MSCB-144


title: 939S_MSCB-143


title: 939S_MSCB-142


title: 939S_MSCB-141


title: 939S_MSCB-154


title: 939S_MSCB-140


title: 939S_MSCB-155


title: 939S_MSCB-149


title: 939S_MSCB-135


title: 939S_MSCB-138


title: 939S_MSCB-136


title: 939S_MSCB-134


title: 939S_MSCB-146


title: 939S_MSCB-130


title: 939S_MSCB-128


title: 939S_MSCB-125


title: 939S_MSCB-123


title: 939S_MSCB-126


title: 939S_MSCB-131


title: 939S_MSCB-122


title: 939S_MSCB-120


title: 939S_MSCB-137


title: 939S_MSCB-127


title: 939S_MSCB-121


title: 939S_MSCB-139


title: 939S_MSCB-124


title: 939S_MSCB-119


title: 939S_MSCB-118


title: 939S_MSCB-132


title: 939S_MSCB-117


title: 939S_MSCB-116


title: 939S_MSCB-114


title: 939S_MSCB-115


title: 939S_MSCB-129


title: 939S_MSCB-133


title: 939S_MSCB-113


title: 939S_MSCB-112


title: 939S_MSCB-110


title: 939S_MSCB-111


title: 939S_MSCB-109


title: 939S_MSCB-104


title: 939S_MSCB-106


title: 939S_MSCB-107


title: 939S_MSCB-160


title: 939S_MSCB-102


title: 939S_MSCB-105


title: 939S_MSCB-101


title: 939S_MSCB-099


title: 939S_MSCB-100


title: 939S_MSCB-096


title: 939S_MSCB-097


title: 939S_MSCB-098


title: 939S_MSCB-094


title: 939S_MSCB-092


title: 939S_MSCB-091


title: 939S_MSCB-089


title: 939S_MSCB-090


title: 939S_MSCB-087


title: 939S_MSCB-086


title: 939S_MSCB-085


title: 939S_MSCB-084


title: 939S_MSCB-083


title: 939S_MSCB-108


title: 939S_MSCB-082


title: 939S_MSCB-103


title: 939S_MSCB-081


title: 939S_MSCB-095


title: 939S_MSCB-093


title: 939S_MSCB-077


title: 939S_MSCB-072


title: 939S_MSCB-076


title: 939S_MSCB-073


title: 939S_MSCB-074


title: 939S_MSCB-088


title: 939S_MSCB-071


title: 939S_MSCB-078


title: 939S_MSCB-070


title: 939S_MSCB-064


title: 939S_MSCB-063


title: 939S_MSCB-066


title: 939S_MSCB-069


title: 939S_MSCB-067


title: 939S_MSCB-062


title: 939S_MSCB-065


title: 939S_MSCB-060


title: 939S_MSCB-061


title: 939S_MSCB-059


title: 939S_MSCB-079


title: 939S_MSCB-058


title: 939S_MSCB-056


title: 939S_MSCB-057


title: 939S_MSCB-080


title: 939S_MSCB-075


title: 939S_MSCB-053


title: 939S_MSCB-054


title: 939S_MSCB-055


title: 939S_MSCB-051


title: 939S_MSCB-068


title: 939S_MSCB-052


title: 939S_MSCB-049


title: 939S_MSCB-048


title: 939S_MSCB-047


title: 939S_MSCB-046


title: 939S_MSCB-040


title: 939S_MSCB-043


title: 939S_MSCB-044


title: 939S_MSCB-036


title: 939S_MSCB-033


title: 939S_MSCB-035


title: 939S_MSCB-034


title: 939S_MSCB-031


title: 939S_MSCB-038


title: 939S_MSCB-029


title: 939S_MSCB-042


title: 939S_MSCB-037


title: 939S_MSCB-032


title: 939S_MSCB-028


title: 939S_MSCB-027


title: 939S_MSCB-023


title: 939S_MSCB-050


title: 939S_MSCB-022


title: 939S_MSCB-026


title: 939S_MSCB-017


title: 939S_MSCB-024


title: 939S_MSCB-018


title: 939S_MSCB-041


title: 939S_MSCB-021


title: 939S_MSCB-012


title: 939S_MSCB-013


title: 939S_MSCB-030


title: 939S_MSCB-020


title: 939S_MSCB-016


title: 939S_MSCB-019


title: 939S_MSCB-007


title: 939S_MSCB-010


title: 939S_MSCB-025


title: 939S_MSCB-014


title: 939S_MSCB-045


title: 939S_MSCB-005


title: 939S_MSCB-039


title: 939S_MSCB-002


title: 939S_MSCB-011


title: 939S_MSCB-015


title: 939S_MSCB-004


title: 939S_MSCB-008


title: 939S_MSCB-003


title: 939S_MSCB-009


title: 938S_MSCB-188


title: 939S_MSCB-001


title: 938S_MSCB-187


title: 938S_MSCB-192


title: 938S_MSCB-185


title: 938S_MSCB-183


title: 938S_MSCB-181


title: 938S_MSCB-190


title: 938S_MSCB-191


title: 939S_MSCB-006


title: 938S_MSCB-179


title: 938S_MSCB-186


title: 938S_MSCB-175


title: 938S_MSCB-184


title: 938S_MSCB-182


title: 938S_MSCB-178


title: 938S_MSCB-177


title: 938S_MSCB-189


title: 938S_MSCB-173


title: 938S_MSCB-174


title: 938S_MSCB-170


title: 938S_MSCB-167


title: 938S_MSCB-165


title: 938S_MSCB-172


title: 938S_MSCB-169


title: 938S_MSCB-168


title: 938S_MSCB-160


title: 938S_MSCB-166


title: 938S_MSCB-180


title: 938S_MSCB-157


title: 938S_MSCB-156


title: 938S_MSCB-163


title: 938S_MSCB-155


title: 938S_MSCB-162


title: 938S_MSCB-154


title: 938S_MSCB-159


title: 938S_MSCB-151


title: 938S_MSCB-158


title: 938S_MSCB-176


title: 938S_MSCB-171


title: 938S_MSCB-153


title: 938S_MSCB-164


title: 938S_MSCB-148


title: 938S_MSCB-149


title: 938S_MSCB-150


title: 938S_MSCB-147


title: 938S_MSCB-143


title: 938S_MSCB-161


title: 938S_MSCB-146


title: 938S_MSCB-145


title: 938S_MSCB-142


title: 938S_MSCB-144


title: 938S_MSCB-139


title: 938S_MSCB-136


title: 938S_MSCB-140


title: 938S_MSCB-141


title: 938S_MSCB-138


title: 938S_MSCB-137


title: 938S_MSCB-130


title: 938S_MSCB-135


title: 938S_MSCB-133


title: 938S_MSCB-152


title: 938S_MSCB-134


title: 938S_MSCB-132


title: 938S_MSCB-126


title: 938S_MSCB-125


title: 938S_MSCB-129


title: 938S_MSCB-124


title: 938S_MSCB-128


title: 938S_MSCB-127


title: 938S_MSCB-121


title: 938S_MSCB-123


title: 938S_MSCB-122


title: 938S_MSCB-120


title: 938S_MSCB-117


title: 938S_MSCB-115


title: 938S_MSCB-118


title: 938S_MSCB-111


title: 938S_MSCB-113


title: 938S_MSCB-131


title: 938S_MSCB-119


title: 938S_MSCB-114


title: 938S_MSCB-110


title: 938S_MSCB-109


title: 938S_MSCB-112


title: 938S_MSCB-108


title: 938S_MSCB-116


title: 938S_MSCB-104


title: 938S_MSCB-105


title: 938S_MSCB-103


title: 938S_MSCB-101


title: 938S_MSCB-100


title: 938S_MSCB-097


title: 938S_MSCB-102


title: 938S_MSCB-096


title: 938S_MSCB-095


title: 938S_MSCB-094


title: 938S_MSCB-093


title: 938S_MSCB-092


title: 938S_MSCB-091


title: 938S_MSCB-090


title: 938S_MSCB-106


title: 938S_MSCB-085


title: 938S_MSCB-084


title: 938S_MSCB-087


title: 938S_MSCB-083


title: 938S_MSCB-081


title: 938S_MSCB-107


title: 938S_MSCB-086


title: 938S_MSCB-079


title: 938S_MSCB-078


title: 938S_MSCB-098


title: 938S_MSCB-080


title: 938S_MSCB-075


title: 938S_MSCB-077


title: 938S_MSCB-072


title: 938S_MSCB-074


title: 938S_MSCB-099


title: 938S_MSCB-076


title: 938S_MSCB-071


title: 938S_MSCB-070


title: 938S_MSCB-068


title: 938S_MSCB-067


title: 938S_MSCB-073


title: 938S_MSCB-066


title: 938S_MSCB-088


title: 938S_MSCB-089


title: 938S_MSCB-082


title: 938S_MSCB-065


title: 938S_MSCB-064


title: 938S_MSCB-062


title: 938S_MSCB-063


title: 938S_MSCB-061


title: 938S_MSCB-058


title: 938S_MSCB-060


title: 938S_MSCB-059


title: 938S_MSCB-056


title: 938S_MSCB-055


title: 938S_MSCB-057


title: 938S_MSCB-054


title: 938S_MSCB-069


title: 938S_MSCB-050


title: 938S_MSCB-048


title: 938S_MSCB-047


title: 938S_MSCB-053


title: 938S_MSCB-052


title: 938S_MSCB-049


title: 938S_MSCB-051


title: 938S_MSCB-040


title: 938S_MSCB-041


title: 938S_MSCB-046


title: 938S_MSCB-045


title: 938S_MSCB-043


title: 938S_MSCB-042


title: 938S_MSCB-039


title: 938S_MSCB-036


title: 938S_MSCB-037


title: 938S_MSCB-035


title: 938S_MSCB-038


title: 938S_MSCB-030


title: 938S_MSCB-033


title: 938S_MSCB-034


title: 938S_MSCB-024


title: 938S_MSCB-032


title: 938S_MSCB-028


title: 938S_MSCB-022


title: 938S_MSCB-026


title: 938S_MSCB-027


title: 938S_MSCB-019


title: 938S_MSCB-018


title: 938S_MSCB-021


title: 938S_MSCB-017


title: 938S_MSCB-015


title: 938S_MSCB-044


title: 938S_MSCB-020


title: 938S_MSCB-009


title: 938S_MSCB-008


title: 938S_MSCB-013


title: 938S_MSCB-011


title: 938S_MSCB-007


title: 938S_MSCB-012


title: 938S_MSCB-014


title: 938S_MSCB-010


title: 938S_MSCB-025


title: 938S_MSCB-029


title: 938S_MSCB-006


title: 938S_MSCB-004


title: 938S_MSCB-031


title: 938S_MSCB-023


title: 938S_MSCB-005


title: 938S_MSCB-003


title: 938S_MSCB-001


title: 937S_MSCB-191

value: C/EBPα


title: 937S_MSCB-190


title: 938S_MSCB-002


title: 938S_MSCB-016


title: 937S_MSCB-189


title: 937S_MSCB-188


title: 937S_MSCB-187


title: 937S_MSCB-184


title: 937S_MSCB-186


title: 937S_MSCB-185


title: 937S_MSCB-182


title: 937S_MSCB-183


title: 937S_MSCB-181


title: 937S_MSCB-178


title: 937S_MSCB-177


title: 937S_MSCB-175


title: 937S_MSCB-174


title: 937S_MSCB-173


title: 937S_MSCB-179


title: 937S_MSCB-172


title: 937S_MSCB-192


title: 937S_MSCB-169


title: 937S_MSCB-168


title: 937S_MSCB-167


title: 937S_MSCB-166


title: 937S_MSCB-165


title: 937S_MSCB-171


title: 937S_MSCB-170


title: 937S_MSCB-163


title: 937S_MSCB-180


title: 937S_MSCB-162


title: 937S_MSCB-159


title: 937S_MSCB-158


title: 937S_MSCB-161


title: 937S_MSCB-164


title: 937S_MSCB-154


title: 937S_MSCB-156


title: 937S_MSCB-155


title: 937S_MSCB-176


title: 937S_MSCB-153


title: 937S_MSCB-152


title: 937S_MSCB-157


title: 937S_MSCB-148


title: 937S_MSCB-147


title: 937S_MSCB-150


title: 937S_MSCB-146


title: 937S_MSCB-145


title: 937S_MSCB-144


title: 937S_MSCB-141


title: 937S_MSCB-139


title: 937S_MSCB-142


title: 937S_MSCB-143


title: 937S_MSCB-140


title: 937S_MSCB-138


title: 937S_MSCB-137


title: 937S_MSCB-160


title: 937S_MSCB-135


title: 937S_MSCB-136


title: 937S_MSCB-134


title: 937S_MSCB-132


title: 937S_MSCB-131


title: 937S_MSCB-130


title: 937S_MSCB-128


title: 937S_MSCB-129


title: 937S_MSCB-127


title: 937S_MSCB-126


title: 937S_MSCB-149


title: 937S_MSCB-151


title: 937S_MSCB-125


title: 937S_MSCB-123


title: 937S_MSCB-122


title: 937S_MSCB-121


title: 937S_MSCB-120


title: 937S_MSCB-124


title: 937S_MSCB-117


title: 937S_MSCB-118


title: 937S_MSCB-112


title: 937S_MSCB-115


title: 937S_MSCB-111


title: 937S_MSCB-116


title: 937S_MSCB-109


title: 937S_MSCB-133


title: 937S_MSCB-113


title: 937S_MSCB-114


title: 937S_MSCB-110


title: 937S_MSCB-104


title: 937S_MSCB-106


title: 937S_MSCB-108


title: 937S_MSCB-107


title: 937S_MSCB-103


title: 937S_MSCB-102


title: 937S_MSCB-100


title: 937S_MSCB-101


title: 937S_MSCB-099


title: 937S_MSCB-096


title: 937S_MSCB-095


title: 937S_MSCB-097


title: 937S_MSCB-119


title: 937S_MSCB-098


title: 937S_MSCB-093


title: 937S_MSCB-094


title: 937S_MSCB-090


title: 937S_MSCB-089


title: 937S_MSCB-086


title: 937S_MSCB-082


title: 937S_MSCB-085


title: 937S_MSCB-105


title: 937S_MSCB-081


title: 937S_MSCB-087


title: 937S_MSCB-088


title: 937S_MSCB-083


title: 937S_MSCB-084


title: 937S_MSCB-078


title: 937S_MSCB-079


title: 937S_MSCB-080


title: 937S_MSCB-077


title: 937S_MSCB-076


title: 937S_MSCB-072


title: 937S_MSCB-074


title: 937S_MSCB-071


title: 937S_MSCB-073


title: 937S_MSCB-067


title: 937S_MSCB-068


title: 937S_MSCB-091


title: 937S_MSCB-092


title: 937S_MSCB-070


title: 937S_MSCB-065


title: 937S_MSCB-066


title: 937S_MSCB-064


title: 937S_MSCB-063


title: 937S_MSCB-062


title: 937S_MSCB-061


title: 937S_MSCB-060


title: 937S_MSCB-058


title: 937S_MSCB-057


title: 937S_MSCB-054


title: 937S_MSCB-055


title: 937S_MSCB-050


title: 937S_MSCB-053


title: 937S_MSCB-075


title: 937S_MSCB-051


title: 937S_MSCB-049


title: 937S_MSCB-052


title: 937S_MSCB-069


title: 937S_MSCB-048


title: 937S_MSCB-047


title: 937S_MSCB-045


title: 937S_MSCB-044


title: 937S_MSCB-040


title: 937S_MSCB-041


title: 937S_MSCB-046


title: 937S_MSCB-043


title: 937S_MSCB-038


title: 937S_MSCB-036


title: 937S_MSCB-037


title: 937S_MSCB-039


title: 937S_MSCB-035


title: 937S_MSCB-056


title: 937S_MSCB-034


title: 937S_MSCB-033


title: 937S_MSCB-059


title: 937S_MSCB-032


title: 937S_MSCB-029


title: 937S_MSCB-031


title: 937S_MSCB-028


title: 937S_MSCB-025


title: 937S_MSCB-026


title: 937S_MSCB-027


title: 937S_MSCB-024


title: 937S_MSCB-023


title: 937S_MSCB-022


title: 937S_MSCB-021


title: 937S_MSCB-020


title: 937S_MSCB-019


title: 937S_MSCB-018


title: 937S_MSCB-016


title: 937S_MSCB-015


title: 937S_MSCB-012


title: 677T_MSCB-181


title: 937S_MSCB-011


title: 937S_MSCB-010


title: 937S_MSCB-014


title: 937S_MSCB-013


title: 677T_MSCB-180


title: 677T_MSCB-177


title: 677T_MSCB-179


title: 677T_MSCB-178


title: 677T_MSCB-175


title: 677T_MSCB-176


title: 677T_MSCB-174


title: 677T_MSCB-173


title: 677T_MSCB-169


title: 677T_MSCB-171


title: 937S_MSCB-042


title: 677T_MSCB-168


title: 677T_MSCB-167


title: 677T_MSCB-170


title: 677T_MSCB-166


title: 677T_MSCB-165


title: 937S_MSCB-017


title: 677T_MSCB-163


title: 677T_MSCB-160


title: 677T_MSCB-157


title: 677T_MSCB-155


title: 677T_MSCB-162


title: 677T_MSCB-164


title: 677T_MSCB-154


title: 677T_MSCB-153


title: 677T_MSCB-156


title: 677T_MSCB-161


title: 677T_MSCB-159


title: 677T_MSCB-152


title: 677T_MSCB-149


title: 937S_MSCB-030


title: 677T_MSCB-150


title: 677T_MSCB-148


title: 677T_MSCB-172


title: 677T_MSCB-151


title: 677T_MSCB-147


title: 677T_MSCB-146


title: 677T_MSCB-144


title: 677T_MSCB-142


title: 677T_MSCB-139


title: 677T_MSCB-140


title: 677T_MSCB-138


title: 677T_MSCB-143


title: 677T_MSCB-137


title: 677T_MSCB-141


title: 677T_MSCB-135


title: 677T_MSCB-132


title: 677T_MSCB-127


title: 677T_MSCB-130


title: 677T_MSCB-126


title: 677T_MSCB-129


title: 677T_MSCB-124


title: 677T_MSCB-122


title: 677T_MSCB-128


title: 677T_MSCB-121


title: 677T_MSCB-118


title: 677T_MSCB-117


title: 677T_MSCB-145


title: 677T_MSCB-120


title: 677T_MSCB-116


title: 677T_MSCB-115


title: 677T_MSCB-119


title: 677T_MSCB-112


title: 677T_MSCB-111


title: 677T_MSCB-110


title: 677T_MSCB-136


title: 677T_MSCB-158


title: 677T_MSCB-133


title: 677T_MSCB-134


title: 677T_MSCB-131


title: 677T_MSCB-107


title: 677T_MSCB-125


title: 677T_MSCB-105


title: 677T_MSCB-113


title: 677T_MSCB-106


title: 677T_MSCB-103


title: 677T_MSCB-104


title: 677T_MSCB-102


title: 677T_MSCB-099


title: 677T_MSCB-100


title: 677T_MSCB-108


title: 677T_MSCB-097


title: 677T_MSCB-098


title: 677T_MSCB-114


title: 677T_MSCB-095


title: 677T_MSCB-093


title: 677T_MSCB-092


title: 677T_MSCB-091


title: 677T_MSCB-094


title: 677T_MSCB-109


title: 677T_MSCB-096


title: 677T_MSCB-090


title: 677T_MSCB-089


title: 677T_MSCB-088


title: 677T_MSCB-087


title: 677T_MSCB-086


title: 677T_MSCB-083


title: 677T_MSCB-082


title: 677T_MSCB-085


title: 677T_MSCB-080


title: 677T_MSCB-084


title: 677T_MSCB-081


title: 677T_MSCB-075


title: 677T_MSCB-078


title: 677T_MSCB-079


title: 677T_MSCB-074


title: 677T_MSCB-072


title: 677T_MSCB-073


title: 677T_MSCB-071


title: 677T_MSCB-070


title: 677T_MSCB-069


title: 677T_MSCB-065


title: 677T_MSCB-067


title: 677T_MSCB-066


title: 677T_MSCB-063


title: 677T_MSCB-064


title: 677T_MSCB-062


title: 677T_MSCB-061


title: 677T_MSCB-060


title: 677T_MSCB-059


title: 677T_MSCB-058


title: 677T_MSCB-057


title: 677T_MSCB-056


title: 677T_MSCB-055


title: 677T_MSCB-054


title: 677T_MSCB-077


title: 677T_MSCB-076


title: 677T_MSCB-052


title: 677T_MSCB-053


title: 677T_MSCB-051


title: 677T_MSCB-049


title: 677T_MSCB-068


title: 677T_MSCB-101


title: 677T_MSCB-048


title: 677T_MSCB-047


title: 677T_MSCB-045


title: 677T_MSCB-044


title: 677T_MSCB-043


title: 677T_MSCB-042


title: 677T_MSCB-040


title: 677T_MSCB-046


title: 677T_MSCB-041


title: 677T_MSCB-039


title: 677T_MSCB-037


title: 677T_MSCB-038


title: 677T_MSCB-036


title: 677T_MSCB-035


title: 677T_MSCB-033


title: 677T_MSCB-031


title: 677T_MSCB-030


title: 677T_MSCB-027


title: 677T_MSCB-050


title: 677T_MSCB-029


title: 677T_MSCB-025


title: 677T_MSCB-028


title: 677T_MSCB-026


title: 677T_MSCB-022


title: 677T_MSCB-023


title: 677T_MSCB-024


title: 677T_MSCB-020


title: 677T_MSCB-019


title: 677T_MSCB-018


title: 677T_MSCB-016


title: 677T_MSCB-017


title: 677T_MSCB-015


title: 677T_MSCB-014


title: 677T_MSCB-034


title: 677T_MSCB-011


title: 677T_MSCB-010


title: 677T_MSCB-009


title: 677T_MSCB-032


title: 677T_MSCB-007


title: 677T_MSCB-012


title: 677T_MSCB-008


title: 677T_MSCB-006


title: 677T_MSCB-005


title: 677T_MSCB-002


title: 677T_MSCB-021


title: 676T_MSCB-192


title: 676T_MSCB-190


title: 676T_MSCB-191


title: 677T_MSCB-003


title: 677T_MSCB-004


title: 676T_MSCB-189


title: 676T_MSCB-187


title: 676T_MSCB-185


title: 676T_MSCB-181


title: 676T_MSCB-182


title: 676T_MSCB-183


title: 676T_MSCB-180


title: 676T_MSCB-188


title: 676T_MSCB-179


title: 676T_MSCB-178


title: 676T_MSCB-177


title: 676T_MSCB-176


title: 676T_MSCB-175


title: 676T_MSCB-174


title: 677T_MSCB-001


title: 676T_MSCB-170


title: 676T_MSCB-171


title: 676T_MSCB-172


title: 676T_MSCB-169


title: 676T_MSCB-173


title: 676T_MSCB-165


title: 676T_MSCB-167


title: 676T_MSCB-186


title: 676T_MSCB-164


title: 676T_MSCB-184


title: 676T_MSCB-163


title: 676T_MSCB-168


title: 676T_MSCB-161


title: 676T_MSCB-162


title: 676T_MSCB-157


title: 676T_MSCB-158


title: 676T_MSCB-159


title: 676T_MSCB-156


title: 676T_MSCB-155


title: 676T_MSCB-154


title: 676T_MSCB-151


title: 676T_MSCB-150


title: 676T_MSCB-149


title: 676T_MSCB-153


title: 676T_MSCB-148


title: 676T_MSCB-146


title: 676T_MSCB-145


title: 676T_MSCB-144


title: 676T_MSCB-147


title: 676T_MSCB-166


title: 676T_MSCB-143


title: 676T_MSCB-142


title: 677T_MSCB-013


title: 676T_MSCB-141


title: 676T_MSCB-138


title: 676T_MSCB-160


title: 676T_MSCB-139


title: 676T_MSCB-136


title: 676T_MSCB-137


title: 676T_MSCB-135


title: 676T_MSCB-140


title: 676T_MSCB-134


title: 676T_MSCB-132


title: 676T_MSCB-133


title: 676T_MSCB-127


title: 676T_MSCB-152


title: 676T_MSCB-126


title: 676T_MSCB-128


title: 676T_MSCB-125


title: 676T_MSCB-122


title: 676T_MSCB-124


title: 676T_MSCB-121


title: 676T_MSCB-123


title: 676T_MSCB-118


title: 676T_MSCB-119


title: 676T_MSCB-120


title: 676T_MSCB-114


title: 676T_MSCB-116


title: 676T_MSCB-113


title: 676T_MSCB-117


title: 676T_MSCB-115


title: 676T_MSCB-111


title: 676T_MSCB-109


title: 676T_MSCB-112


title: 676T_MSCB-110


title: 676T_MSCB-131


title: 676T_MSCB-107


title: 676T_MSCB-106


title: 676T_MSCB-129


title: 676T_MSCB-130


title: 676T_MSCB-101


title: 676T_MSCB-103


title: 676T_MSCB-105


title: 676T_MSCB-102


title: 676T_MSCB-100


title: 676T_MSCB-099


title: 676T_MSCB-104


title: 676T_MSCB-097


title: 676T_MSCB-098


title: 676T_MSCB-095


title: 676T_MSCB-093


title: 676T_MSCB-094


title: 676T_MSCB-092


title: 676T_MSCB-096


title: 676T_MSCB-091


title: 676T_MSCB-090


title: 676T_MSCB-086


title: 676T_MSCB-089


title: 676T_MSCB-085


title: 676T_MSCB-087


title: 676T_MSCB-084


title: 676T_MSCB-083


title: 676T_MSCB-081


title: 676T_MSCB-108


title: 676T_MSCB-078


title: 676T_MSCB-077


title: 676T_MSCB-075


title: 676T_MSCB-076


title: 676T_MSCB-071


title: 676T_MSCB-073


title: 676T_MSCB-070


title: 676T_MSCB-074


title: 676T_MSCB-069


title: 676T_MSCB-088


title: 676T_MSCB-065


title: 676T_MSCB-066


title: 676T_MSCB-067


title: 676T_MSCB-068


title: 676T_MSCB-063


title: 676T_MSCB-062


title: 676T_MSCB-059


title: 677T_MSCB-123


title: 676T_MSCB-061


title: 676T_MSCB-060


title: 676T_MSCB-057


title: 676T_MSCB-056


title: 676T_MSCB-082


title: 676T_MSCB-055


title: 676T_MSCB-054


title: 676T_MSCB-053


title: 676T_MSCB-051


title: 676T_MSCB-052


title: 676T_MSCB-050


title: 676T_MSCB-047


title: 676T_MSCB-048


title: 676T_MSCB-045


title: 676T_MSCB-064


title: 676T_MSCB-044


title: 676T_MSCB-080


title: 676T_MSCB-079


title: 676T_MSCB-046


title: 676T_MSCB-058


title: 676T_MSCB-072


title: 676T_MSCB-040


title: 676T_MSCB-039


title: 676T_MSCB-037


title: 676T_MSCB-041


title: 676T_MSCB-038


title: 676T_MSCB-034


title: 676T_MSCB-043


title: 676T_MSCB-042


title: 676T_MSCB-033


title: 676T_MSCB-030


title: 676T_MSCB-036


title: 676T_MSCB-032


title: 676T_MSCB-035


title: 676T_MSCB-028


title: 676T_MSCB-049


title: 676T_MSCB-029


title: 676T_MSCB-027


title: 676T_MSCB-026


title: 676T_MSCB-023


title: 676T_MSCB-025


title: 676T_MSCB-021


title: 676T_MSCB-019


title: 676T_MSCB-020


title: 676T_MSCB-018


title: 676T_MSCB-017


title: 676T_MSCB-016


title: 676T_MSCB-015


title: 676T_MSCB-014


title: 676T_MSCB-009


title: 676T_MSCB-010


title: 676T_MSCB-005


title: 676T_MSCB-008


title: 676T_MSCB-006


title: 676T_MSCB-004


title: 676T_MSCB-003


title: 676T_MSCB-002


title: 676T_MSCB-001


title: 675T_MSCB-191

value: day 2


title: 676T_MSCB-031


title: 676T_MSCB-024


title: 675T_MSCB-189


title: 675T_MSCB-188


title: 676T_MSCB-022


title: 675T_MSCB-186


title: 675T_MSCB-184


title: 675T_MSCB-183


title: 676T_MSCB-013


title: 675T_MSCB-185


title: 675T_MSCB-181


title: 676T_MSCB-012


title: 675T_MSCB-182


title: 675T_MSCB-179


title: 676T_MSCB-011


title: 675T_MSCB-178


title: 675T_MSCB-177


title: 675T_MSCB-192


title: 675T_MSCB-175


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title: 672T_MSCB-058


title: 672T_MSCB-057


title: 672T_MSCB-053


title: 672T_MSCB-052


title: 672T_MSCB-051


title: 672T_MSCB-069


title: 672T_MSCB-048


title: 672T_MSCB-046


title: 672T_MSCB-047


title: 672T_MSCB-044


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title: 672T_MSCB-036


title: 672T_MSCB-059


title: 672T_MSCB-035


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title: 672T_MSCB-032


title: 672T_MSCB-031


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title: 672T_MSCB-030


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title: 672T_MSCB-027


title: 672T_MSCB-029


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title: 672T_MSCB-026


title: 672T_MSCB-025


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title: 672T_MSCB-015


title: 672T_MSCB-016


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title: 672T_MSCB-013


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title: 672T_MSCB-005


title: 672T_MSCB-004


title: 672T_MSCB-002


title: 672T_MSCB-003


title: 672T_MSCB-001


title: 672T_MSCB-022


title: 033U_MSCB-187

value: transdifferentiation

value: iMac


title: 033U_MSCB-191


title: 033U_MSCB-190


title: 033U_MSCB-189


title: 033U_MSCB-186


title: 033U_MSCB-185


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title: 033U_MSCB-172


title: 033U_MSCB-174


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title: 033U_MSCB-192


title: 033U_MSCB-171


title: 033U_MSCB-173


title: 033U_MSCB-169


title: 033U_MSCB-166


title: 033U_MSCB-164


title: 033U_MSCB-162


title: 033U_MSCB-167


title: 033U_MSCB-159


title: 033U_MSCB-158


title: 033U_MSCB-163


title: 033U_MSCB-165


title: 033U_MSCB-157


title: 033U_MSCB-160


title: 033U_MSCB-156


title: 033U_MSCB-161


title: 033U_MSCB-155


title: 033U_MSCB-154


title: 033U_MSCB-151


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title: 033U_MSCB-148


title: 033U_MSCB-168


title: 033U_MSCB-136


title: 033U_MSCB-137


title: 033U_MSCB-146


title: 033U_MSCB-145


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title: 033U_MSCB-134


title: 033U_MSCB-143


title: 033U_MSCB-142


title: 033U_MSCB-141


title: 033U_MSCB-127


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title: 033U_MSCB-131


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title: 033U_MSCB-130


title: 033U_MSCB-125


title: 033U_MSCB-132


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title: 033U_MSCB-122


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title: 033U_MSCB-082


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title: 033U_MSCB-077


title: 033U_MSCB-074


title: 033U_MSCB-078


title: 033U_MSCB-080


title: 033U_MSCB-081


title: 033U_MSCB-079


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title: 033U_MSCB-083


title: 033U_MSCB-069


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title: 033U_MSCB-062


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title: 033U_MSCB-057


title: 033U_MSCB-058


title: 033U_MSCB-055


title: 033U_MSCB-053


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title: 033U_MSCB-056


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title: 033U_MSCB-049


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title: 033U_MSCB-054


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title: 033U_MSCB-042


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title: 033U_MSCB-028


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title: 033U_MSCB-052


title: 033U_MSCB-027


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title: 033U_MSCB-025


title: 033U_MSCB-021


title: 033U_MSCB-023


title: 033U_MSCB-024


title: 033U_MSCB-022


title: 033U_MSCB-020


title: 033U_MSCB-014


title: 033U_MSCB-016


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title: 033U_MSCB-003


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title: 032U_MSCB-189


title: 032U_MSCB-188


title: 032U_MSCB-191


title: 033U_MSCB-019


title: 033U_MSCB-017


title: 033U_MSCB-018


title: 032U_MSCB-187


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title: 032U_MSCB-170


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title: 032U_MSCB-166


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title: 032U_MSCB-163


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title: 032U_MSCB-158


title: 032U_MSCB-156


title: 032U_MSCB-160


title: 032U_MSCB-157


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title: 032U_MSCB-155


title: 032U_MSCB-154


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title: 032U_MSCB-169


title: 032U_MSCB-145


title: 032U_MSCB-147


title: 032U_MSCB-165


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title: 032U_MSCB-141


title: 032U_MSCB-142


title: 032U_MSCB-143


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title: 032U_MSCB-135


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title: 032U_MSCB-132


title: 032U_MSCB-129


title: 032U_MSCB-136


title: 032U_MSCB-133


title: 032U_MSCB-128


title: 032U_MSCB-127


title: 032U_MSCB-130


title: 032U_MSCB-151


title: 032U_MSCB-125


title: 032U_MSCB-149


title: 032U_MSCB-146


title: 032U_MSCB-144


title: 032U_MSCB-122


title: 032U_MSCB-123


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title: 032U_MSCB-117


title: PPARa_ChIPseq_GPS2_LKO_1

city: Huddinge

first: Rongrong

last: Fan

address: Hälsovägen 7c

country: Sweden

institute: Karolinska Institutet

library_source: genomic

data_processing:
ChIP-seq raw files (fastq files) were aligned to the NCBI37/mm9 version of the mouse reference genome, using Bowtie2 with default parameters. HOMER were then used for the tag directories construction from SAM files, duplicated reads removal, peak calling, peaks annotation, raw tag counts extraction and Bed file generation. Only peaks with fold enrichment over input tag count and local tag count > 4 and fdr< 0.001 (default -F -L -C -fdr) are kept.
Genome_build: mm9
Supplementary_files_format_and_content: Raw tag counts files are in txt format and contain the merged peaks, annotation and raw tag counts of the respective peaks in the indicated samples.  Bed files contain the genomic coordinates, tag counts, fold changes and p value of each peak.

molecule: genomic DNA

extract_protocol:
Fresh mouse livers were crosslinked with 2 mM disuccinimidyl glutarate (DSG) for 30 min, followed by 1% formaldehyde for 10 min at room temperature. Nuclei were isolated, sonicated and incubated with magnetic bead-antibody complexes.
ChIPed DNA was processed using Rubicon ThruPLEX DNA-seq kit. Briefly, DNA was end-repaired and ligated to stem-loop adaptors. Then DNA was PCR amplified with Illumina-compatible primers for 7-11 cycles and library fragments of 200 to 400 bp were selected using Ampure XP beads.

treatment_protocol: All mice under normal chow diet

tag: strain background

value: 8-12 week

tag: tissue

value: Liver

tag: chip antibody

value: PPARa (Millipore, MAB3890)


title: PPARa_ChIPseq_GPS2_LKO_3


title: PPARa_ChIPseq_GPS2_WT_2


title: PPARa_ChIPseq_GPS2_WT_1


title: 032U_MSCB-115

tag: cell type


title: 032U_MSCB-112

tag: treatment


title: 032U_MSCB-113

tag: induction


title: 032U_MSCB-110

tag: fate


title: 032U_MSCB-114

tag: time point


title: 032U_MSCB-124


title: H3K27ac_ChIPseq_SMRT_LKO_1

data_processing:
ChIP-seq raw files (fastq files) were aligned to the NCBI37/mm9 version of the mouse reference genome, using Bowtie2 with default parameters. HOMER were then used for the tag directories construction from SAM files, duplicated reads removal, peak calling, peaks annotation, raw tag counts extraction and Bed file generation. Only peaks with fold enrichment over input tag count and local tag count > 4 and fdr< 0.001 (default -F -L -C -fdr) are kept.
Genome_build: mm9
Supplementary_files_format_and_content: Raw tag counts files are in txt format and contain the merged peaks, annotation and raw tag counts of the respective peaks in the indicated samples.  Bed files contain the genomic coordinates, tag counts, fold changes and p value of each peak.
RNA-seq raw files (fastq files) were aligned to GRCm38/mm10 version of the mouse reference genome, using HISAT2 with defalt settings. SAM files were converted to BAM files and then sorted using SAMtools. featureCounts were then used to count tag in all exons.
Genome_build: mm10
Supplementary_files_format_and_content: RNA-seq subreads counts files are in txt format and contain gene id and tag counts  in the indicated samples.

source_name: Liver

tag: strain

tag: genotype/variation

value: liver

value: H3K27ac (Abcam, ab4729)


title: H3K27ac_ChIPseq_SMRT_LKO_3


title: H3K27ac_ChIPseq_SMRT_LKO_2


title: 032U_MSCB-111


title: H3K27ac_ChIPseq_SMRT_WT_1


title: H3K27ac_ChIPseq_SMRT_WT_3


title: 032U_MSCB-109


title: 032U_MSCB-108


title: PPARa_ChIPseq_GPS2_LKO_2


title: H3K27ac_ChIPseq_NCOR_LKO_2


title: 032U_MSCB-106


title: 032U_MSCB-105


title: PPARa_ChIPseq_GPS2_WT_3


title: H3K27ac_ChIPseq_NCOR_LKO_1


title: H3K27ac_ChIPseq_NCOR_LKO_3


title: 032U_MSCB-107


title: H3K27ac_ChIPseq_NCOR_WT_3


title: 032U_MSCB-103


title: H3K27ac_ChIPseq_NCOR_WT_2


title: 032U_MSCB-116


title: 032U_MSCB-100


title: H3K27ac_ChIPseq_SMRT_WT_2


title: H3K27ac_ChIPseq_NCOR_WT_1


title: 032U_MSCB-102


title: 032U_MSCB-099


title: 032U_MSCB-104


title: PPARa_ChIPseq_NCOR_LKO_2


title: PPARa_ChIPseq_NCOR_LKO_3


title: 032U_MSCB-098


title: 032U_MSCB-097


title: PPARa_ChIPseq_NCOR_WT_3


title: PPARa_ChIPseq_NCOR_WT_2


title: PPARa_ChIPseq_NCOR_WT_1


title: 032U_MSCB-101


title: 032U_MSCB-126


title: 032U_MSCB-095


title: GPS2_ChIPseq_NCOR_LKO_3


title: PPARa_ChIPseq_NCOR_LKO_1


title: 032U_MSCB-092


title: 032U_MSCB-096


title: 032U_MSCB-094


title: GPS2_ChIPseq_NCOR_WT_3


title: GPS2_ChIPseq_NCOR_WT_2


title: GPS2_ChIPseq_NCOR_LKO_2


title: GPS2_ChIPseq_NCOR_LKO_1


title: 032U_MSCB-093


title: 032U_MSCB-091


title: GPS2_ChIPseq_NCOR_WT_1


title: 032U_MSCB-090


title: 032U_MSCB-089


title: NCOR_ChIPseq_PPARa_KO_3

value: NCOR (Bethyl laboratories, A301-145A)


title: 032U_MSCB-088


title: 032U_MSCB-087


title: NCOR_ChIPseq_PPARa_KO_2


title: NCOR_ChIPseq_PPARa_KO_1


title: 032U_MSCB-085


title: NCOR_ChIPseq_PPARa_WT_3


title: 032U_MSCB-086


title: NCOR_ChIPseq_PPARa_WT_2


title: NCOR_ChIPseq_PPARa_WT_1


title: 032U_MSCB-082


title: GPS2_ChIPseq_PPARa_KO_3


title: 032U_MSCB-081


title: 032U_MSCB-083


title: GPS2_ChIPseq_PPARa_KO_2


title: GPS2_ChIPseq_PPARa_WT_3


title: GPS2_ChIPseq_PPARa_KO_1


title: PPARa_ChIPseq_PPARa_KO_2


title: PPARa_ChIPseq_PPARa_KO_1


title: 032U_MSCB-080


title: 032U_MSCB-076


title: 032U_MSCB-079


title: GPS2_ChIPseq_PPARa_WT_1


title: 032U_MSCB-078


title: PPARa_ChIPseq_PPARa_WT_2


title: 032U_MSCB-075


title: 032U_MSCB-074


title: 032U_MSCB-072


title: 032U_MSCB-084


title: PPARa_ChIPseq_PPARa_WT_1


title: 032U_MSCB-073


title: NCOR_ChIPseq_GPS2_LKO_1


title: NCOR_ChIPseq_GPS2_LKO_3


title: NCOR_ChIPseq_GPS2_LKO_2


title: 032U_MSCB-071


title: NCOR_ChIPseq_GPS2_WT_3


title: 032U_MSCB-077


title: NCOR_ChIPseq_GPS2_WT_1


title: NCOR_ChIPseq_GPS2_WT_2


title: PolII_ChIPseq_GPS2_WT

value: PolII (BioLegend, 664906)


title: 032U_MSCB-070


title: 032U_MSCB-067


title: GPS2_ChIPseq_PPARa_WT_2


title: 032U_MSCB-066


title: 032U_MSCB-065


title: 032U_MSCB-068


title: 032U_MSCB-064


title: GPS2_ChIPseq_GPS2_WT


title: 032U_MSCB-062


title: WTCHG_380869_256280: M38+ Spleen single cell bulk

city: Oxford

first: Timothy

last: Hinks

state: United Kingdom

address: John Radcliffe Hospital, Headley Way, Oxford

department: NDM Experimental Medicine - New College

country: United Kingdom

institute: University of  Oxford

data_processing:
RNA-seq reads were aligned to reference genome sequences using STAR(Dobin et al., 2013) aligner software. Mapped reads were assigned to genomic features using Rsubread(Liao et al., 2013)  R package(Team, 2014).
Pre-processing, gene and sample filtering, data visualization and analysis were performed using Scater (McCarthy et al, 2017),scran (Lun  et al, 2016), EdgeR (Robinson et al, 2010), WGCNA (Langefekder et al,2008) R packages. Data sets results comparisons were performed using GSEA ( Subramanian, Tamayo et al, 2005).TCR repertoire was inferred using TraCeR software (Stubbington et al,2016)
Hierarchical clustering analysis of cell transcription profiles was conducted in R employing highly variable genes (IQR >0.75(Gentleman et al., 2004)) and Euclidian distance.
Genome_build: mm10
Supplementary_files_format_and_content: raw_counts_w_ercc.txt: Raw mapped genes read counts
Supplementary_files_format_and_content: sce_k_G1_tmm_voom_quant_norm_entrezIDs.txt: Normalized, voom transformed (log cpm) gene expression values. Filtered genes and samples.

source_name: Spleen bulk

extract_protocol:
Extraction and reverse transcription was as described by Picelli et al. (Nature Protocols, 2014). Briefly, single cells were lysed with 2ul buffer containing 0.2% (vol/vol) Triton X-100 and 2Uµ-1 Rnase inhibitorand mixed 1µl oligo-dT primer and 1µl of dNTP mix. Samples were incubated at 72°C for 3 mins.  Reverse transcription mix containing SuperScript II (Invitrogen) reverse transcriptase 100 U, RNAase inhibitor 10 U, SuperScript II first-strand buffer, DTT 5mM, betaine 1 M, MgCl2 6mM, TSO 1 µM and nuclease free water, was added to the samples. Samples where incubated at 45°C for 90mins followed by 10 cycles of 50°C for 2mins and 42°C for 2 min.
Library preparation of purified amplified cDNA was performed using Nextera XT library preparation (Illumina, AUS). Following QC, 150 pg of cDNA was tagmented (simultaneously fragmented with adaptors inserted) using Nextera transposons. Molecular barcodes were incorporated during 12 cycles of amplification followed by purification using AMPure XP. The libraries passed a quality checkpoint (Qubit and Bioanalyser HS DNA) prior to normalization and pooling before loading onto the HiSeq 2500 (Illumina, AUS) for paired end sequencing.

treatment_protocol: MCMV (Strain Smith, ATCC: VR194) was  injected i.v. at a dose of 1 x 106 pfus. Spleen and gut was obtained day 28 post infection. Spleen was minced, passed through a 40µm filter and red blood cells lysed. To obtain IELs, Peyer’s patches and fecal content were first removed from intestines. The intestines were then flushed with PBS and cut open longitudinally. To separate IELs from intestinal tissue, intestinal tissue was incubated in HBSS supplemented with 5mM EDTA, 10% FCS, 25 mM HEPES for 20 min at 200 rpm at 37°C, passed through a 40 µm nylon filter and purified by Percoll (GE healthcare, Little Chalfont, UK) gradient centrifugation. CD8+ T-cells were enriched by negative selection using the Miltenyi Biotec GmbH CD8a+ T-cell isolation kit (Bergisch Gladbach, Germany) as per manufacturer’s instructions. After M38-tetramer and surface staining, tetramer+ CD3+ CD8+ single-cells were sorted in two 96-well plates using a SH800S cell sorter (Sony, Tokyo, Japan).

value: Spleen bulk

tag: cell population

value: Live CD3+CD8+M38tetramer+

value: MCMV infected

tag: sample number

tag: sample id

value: spleen bulk_192


title: WTCHG_380869_255280: M38+ Spleen single cell

source_name: Spleen

value: Spleen


title: WTCHG_380869_253280: M38+ Spleen single cell


title: 032U_MSCB-061

value: pre-B cell


title: WTCHG_380869_252280: M38+ Spleen single cell


title: 032U_MSCB-059

value: C/EBPα


title: 032U_MSCB-069


title: 032U_MSCB-060


title: 032U_MSCB-058


title: PolII_ChIPseq_GPS2_LKO

tag: age


title: WTCHG_380869_251280: M38+ Spleen single cell


title: WTCHG_380869_250280: M38+ Spleen single cell


title: 032U_MSCB-057


title: 032U_MSCB-056


title: WTCHG_380869_249280: M38+ Spleen single cell


title: 032U_MSCB-063


title: WTCHG_380869_254280: M38+ Spleen single cell


title: WTCHG_380869_230280: M38+ Gut single cell

source_name: Gut IEL

value: Gut intraepithelium (IEL)


title: WTCHG_380869_255279: M38+ Gut single cell


title: WTCHG_380869_229280: Gut single cell bulk CD8+/T-

source_name: Gut IEL bulk CD8+/T-

value: Gut intraepithelium (IEL) bulk CD8+/T-

value: Live CD3+CD8+M38tetramer-

value: IEL bulk CD8+/T-_181


title: WTCHG_380869_256279: M38+ Gut single cell


title: 032U_MSCB-055

value: transdifferentiation

value: iMac


title: 032U_MSCB-052


title: WTCHG_380869_232280: M38+ Gut single cell


title: 032U_MSCB-054


title: 032U_MSCB-053


title: 032U_MSCB-050


title: 032U_MSCB-049


title: WTCHG_380869_253279: M38+ Gut single cell


title: WTCHG_380869_252279: M38+ Gut single cell


title: 032U_MSCB-047


title: 032U_MSCB-048


title: WTCHG_380869_250279: M38+ Gut single cell


title: WTCHG_380869_251279: M38+ Gut single cell


title: 032U_MSCB-046


title: WTCHG_380869_249279: M38+ Gut single cell


title: WTCHG_380869_231280: M38+ Gut single cell


title: WTCHG_380869_232279: M38+ Gut single cell


title: 032U_MSCB-045


title: 032U_MSCB-043


title: 032U_MSCB-051


title: WTCHG_380869_230279: M38+ Gut single cell


title: WTCHG_380869_254279: M38+ Gut single cell


title: 032U_MSCB-041


title: WTCHG_380869_229279: M38+ Gut single cell


title: WTCHG_380869_256278: M38+ Spleen single cell


title: 032U_MSCB-042


title: WTCHG_380869_255278: M38+ Spleen single cell


title: 032U_MSCB-040


title: 032U_MSCB-039


title: 032U_MSCB-038


title: WTCHG_380869_253278: M38+ Spleen single cell


title: WTCHG_380869_254278: M38+ Spleen single cell


title: 032U_MSCB-037


title: 032U_MSCB-036


title: 032U_MSCB-035


title: WTCHG_380869_251278: M38+ Spleen single cell


title: WTCHG_380869_252278: M38+ Spleen single cell


title: 032U_MSCB-044


title: 032U_MSCB-034


title: 032U_MSCB-033


title: WTCHG_380869_231279: M38+ Gut single cell


title: 032U_MSCB-032


title: WTCHG_380869_249278: M38+ Spleen single cell


title: WTCHG_380869_231278: M38+ Spleen single cell


title: WTCHG_380869_250278: M38+ Spleen single cell


title: 032U_MSCB-030


title: WTCHG_380869_232278: M38+ Spleen single cell


title: 032U_MSCB-029


title: 032U_MSCB-028


title: WTCHG_380869_256277: M38+ Spleen single cell


title: 032U_MSCB-027


title: WTCHG_380869_254277: M38+ Spleen single cell


title: WTCHG_380869_253277: M38+ Spleen single cell


title: 032U_MSCB-026


title: WTCHG_380869_230278: M38+ Spleen single cell


title: 032U_MSCB-024


title: 032U_MSCB-025


title: 032U_MSCB-031


title: WTCHG_380869_252277: M38+ Gut single cell


title: 032U_MSCB-023


title: WTCHG_380869_232277: M38+ Gut single cell


title: 032U_MSCB-022


title: 032U_MSCB-020


title: WTCHG_380869_230277: M38+ Gut single cell


title: WTCHG_380869_229277: M38+ Gut single cell


title: 032U_MSCB-019


title: WTCHG_380869_231277: M38+ Gut single cell


title: 032U_MSCB-018


title: WTCHG_380869_256276: M38+ Spleen single cell


title: WTCHG_380869_255277: M38+ Spleen single cell


title: WTCHG_380869_229278: M38+ Spleen single cell


title: 032U_MSCB-017


title: WTCHG_380869_255276: M38+ Spleen single cell


title: WTCHG_380869_254276: M38+ Spleen single cell


title: WTCHG_380869_251277: M38+ Gut single cell


title: WTCHG_380869_253276: M38+ Spleen single cell


title: 032U_MSCB-014


title: 032U_MSCB-016


title: 032U_MSCB-012


title: WTCHG_380869_249276: M38+ Spleen single cell


title: WTCHG_380869_252276: M38+ Spleen single cell


title: 032U_MSCB-015


title: 032U_MSCB-011


title: WTCHG_380869_250276: M38+ Spleen single cell


title: 032U_MSCB-013


title: WTCHG_380869_251276: M38+ Spleen single cell


title: WTCHG_380869_249277: M38+ Gut single cell


title: 032U_MSCB-010


title: 032U_MSCB-009


title: WTCHG_380869_232276: M38+ Gut single cell


title: WTCHG_380869_231276: M38+ Gut single cell


title: 032U_MSCB-021


title: 032U_MSCB-006


title: 032U_MSCB-008


title: WTCHG_380869_229276: M38+ Gut single cell


title: 032U_MSCB-005


title: WTCHG_380869_254275: M38+ Gut single cell


title: WTCHG_380869_255275: M38+ Gut single cell


title: 032U_MSCB-003


title: WTCHG_380869_252275: M38+ Gut single cell


title: 031U_MSCB-192

value: reprogramming

value: OSKM

value: iPSCs

value: day 6


title: WTCHG_380869_232275: M38+ Gut single cell


title: 032U_MSCB-002


title: WTCHG_380869_231275: M38+ Gut single cell


title: WTCHG_380869_251275: M38+ Gut single cell


title: 032U_MSCB-004


title: 031U_MSCB-190


title: WTCHG_380869_230275: M38+ Gut single cell


title: 032U_MSCB-007


title: 032U_MSCB-001


title: WTCHG_380869_255274: M38+ Spleen single cell


title: 031U_MSCB-191


title: WTCHG_380869_250275: M38+ Gut single cell


title: 031U_MSCB-184


title: 031U_MSCB-185


title: 031U_MSCB-183


title: 031U_MSCB-188


title: 031U_MSCB-187


title: 031U_MSCB-186


title: WTCHG_380869_229275: M38+ Gut single cell


title: WTCHG_380869_252274: M38+ Spleen single cell


title: WTCHG_380869_253274: M38+ Spleen single cell


title: WTCHG_380869_256274: M38+ Spleen single cell


title: WTCHG_380869_230276: M38+ Gut single cell


title: WTCHG_380869_249275: M38+ Gut single cell


title: WTCHG_380869_253275: M38+ Gut single cell


title: WTCHG_380869_254274: M38+ Spleen single cell


title: 031U_MSCB-182


title: WTCHG_380869_251274: M38+ Spleen single cell


title: 031U_MSCB-189


title: 031U_MSCB-177


title: 031U_MSCB-181


title: 031U_MSCB-180


title: 031U_MSCB-176


title: WTCHG_380869_250274: M38+ Spleen single cell


title: WTCHG_380869_232274: M38+ Spleen single cell


title: WTCHG_380869_231274: M38+ Spleen single cell


title: 031U_MSCB-175


title: WTCHG_380869_256273: M38+ Spleen single cell


title: 031U_MSCB-178


title: WTCHG_380869_255273: M38+ Spleen single cell


title: 031U_MSCB-179


title: WTCHG_380869_230274: M38+ Spleen single cell


title: WTCHG_380869_229274: M38+ Spleen single cell


title: 031U_MSCB-173


title: 031U_MSCB-174


title: 031U_MSCB-170


title: 031U_MSCB-171


title: 031U_MSCB-169


title: WTCHG_380869_252273: M38+ Gut single cell


title: WTCHG_380869_253273: M38+ Spleen single cell


title: WTCHG_380869_251273: M38+ Gut single cell


title: WTCHG_380869_250273: M38+ Gut single cell


title: WTCHG_380869_249274: M38+ Spleen single cell


title: 031U_MSCB-168


title: WTCHG_380869_249273: M38+ Gut single cell


title: 031U_MSCB-167


title: 031U_MSCB-166


title: WTCHG_380869_231273: M38+ Gut single cell


title: WTCHG_380869_232273: M38+ Gut single cell


title: 031U_MSCB-172


title: 031U_MSCB-165


title: WTCHG_380869_230273: M38+ Gut single cell


title: 031U_MSCB-162


title: WTCHG_380869_227256: M38+ Spleen single cell


title: WTCHG_380869_228256: Spleen single cell bulk CD8+/T-

source_name: Spleen bulk CD8+/T-

value: Spleen bulk CD8+/T-

value: spleen bulk CD8+/T-_96


title: 031U_MSCB-164


title: 031U_MSCB-161


title: 031U_MSCB-163


title: 031U_MSCB-159


title: WTCHG_380869_254273: M38+ Spleen single cell

value: Live CD3+CD8+M38tetramer+

value: MCMV infected


title: WTCHG_380869_225256: M38+ Spleen single cell

value: Spleen


title: 031U_MSCB-158

value: pre-B cell


title: WTCHG_380869_207256: M38+ Spleen single cell


title: WTCHG_380869_208256: M38+ Spleen single cell


title: 031U_MSCB-157


title: WTCHG_380869_206256: M38+ Spleen single cell


title: WTCHG_380869_205256: M38+ Spleen single cell


title: 031U_MSCB-155


title: WTCHG_380869_204256: M38+ Spleen single cell


title: 031U_MSCB-154


title: WTCHG_380869_203256: M38+ Spleen single cell


title: WTCHG_380869_202256: M38+ Spleen single cell


title: 031U_MSCB-153


title: WTCHG_380869_201256: M38+ Spleen single cell


title: 031U_MSCB-152


title: WTCHG_380869_226256: M38+ Spleen single cell


title: 031U_MSCB-151


title: WTCHG_380869_227255: M38+ Spleen single cell


title: WTCHG_380869_228255: M38+ Spleen single cell


title: 031U_MSCB-149


title: WTCHG_380869_225255: M38+ Spleen single cell


title: WTCHG_380869_226255: M38+ Spleen single cell


title: WTCHG_380869_207255: M38+ Gut single cell


title: WTCHG_380869_208255: M38+ Gut single cell


title: 031U_MSCB-150


title: 031U_MSCB-160


title: 031U_MSCB-146


title: 031U_MSCB-156


title: WTCHG_380869_205255: M38+ Gut single cell


title: 031U_MSCB-145


title: 031U_MSCB-144


title: WTCHG_380869_204255: M38+ Gut single cell


title: 031U_MSCB-142


title: WTCHG_380869_202255: M38+ Gut single cell


title: 031U_MSCB-143


title: 031U_MSCB-139


title: WTCHG_380869_226254: M38+ Spleen single cell


title: WTCHG_380869_203255: M38+ Gut single cell


title: WTCHG_380869_228254: M38+ Spleen single cell


title: 031U_MSCB-148


title: 031U_MSCB-140


title: WTCHG_380869_208254: M38+ Spleen single cell


title: WTCHG_380869_201255: M38+ Gut single cell


title: 031U_MSCB-136


title: 031U_MSCB-147


title: WTCHG_380869_207254: M38+ Spleen single cell


title: WTCHG_380869_225254: M38+ Spleen single cell


title: 031U_MSCB-138


title: 031U_MSCB-135


title: WTCHG_380869_205254: M38+ Spleen single cell


title: WTCHG_380869_206254: M38+ Spleen single cell


title: WTCHG_380869_204254: M38+ Gut single cell


title: WTCHG_380869_203254: M38+ Gut single cell


title: 031U_MSCB-132


title: 031U_MSCB-133


title: 031U_MSCB-134


title: 031U_MSCB-131


title: WTCHG_380869_202254: M38+ Gut single cell


title: 031U_MSCB-130


title: WTCHG_380869_227254: M38+ Spleen single cell


title: WTCHG_380869_201254: M38+ Gut single cell


title: WTCHG_380869_228253: M38+ Gut single cell


title: 031U_MSCB-137


title: 031U_MSCB-141


title: WTCHG_380869_227253: M38+ Gut single cell


title: 031U_MSCB-128


title: 031U_MSCB-127


title: 031U_MSCB-129


title: 031U_MSCB-126


title: 031U_MSCB-125


title: 031U_MSCB-123


title: 031U_MSCB-124


title: WTCHG_380869_226253: M38+ Gut single cell


title: WTCHG_380869_208253: M38+ Gut single cell


title: WTCHG_380869_204253: M38+ Gut single cell


title: 031U_MSCB-121


title: WTCHG_380869_206253: M38+ Gut single cell


title: 031U_MSCB-122


title: WTCHG_380869_207253: M38+ Gut single cell


title: 031U_MSCB-120


title: 031U_MSCB-119


title: WTCHG_380869_203253: M38+ Gut single cell


title: 031U_MSCB-118


title: WTCHG_380869_225253: M38+ Gut single cell


title: WTCHG_380869_228252: M38+ Spleen single cell


title: WTCHG_380869_227252: M38+ Spleen single cell


title: WTCHG_380869_201253: M38+ Gut single cell


title: WTCHG_380869_202253: M38+ Gut single cell


title: 031U_MSCB-117


title: 031U_MSCB-116


title: 031U_MSCB-115


title: WTCHG_380869_226252: M38+ Spleen single cell


title: WTCHG_380869_225252: M38+ Spleen single cell


title: 031U_MSCB-114


title: WTCHG_380869_208252: M38+ Spleen single cell


title: 031U_MSCB-113


title: WTCHG_380869_207252: M38+ Spleen single cell


title: WTCHG_380869_206252: M38+ Spleen single cell


title: 031U_MSCB-111


title: 031U_MSCB-112


title: WTCHG_380869_205252: M38+ Spleen single cell


title: WTCHG_380869_202252: M38+ Spleen single cell


title: WTCHG_380869_203252: M38+ Spleen single cell


title: 031U_MSCB-107


title: 031U_MSCB-109


title: WTCHG_380869_228251: M38+ Spleen single cell


title: 031U_MSCB-105


title: WTCHG_380869_204252: M38+ Spleen single cell


title: WTCHG_380869_201252: M38+ Spleen single cell


title: WTCHG_380869_227251: M38+ Spleen single cell


title: 031U_MSCB-108


title: 031U_MSCB-102


title: WTCHG_380869_225251: M38+ Spleen single cell


title: WTCHG_380869_208251: M38+ Gut single cell


title: 031U_MSCB-101


title: 031U_MSCB-103


title: 031U_MSCB-100


title: WTCHG_380869_206251: M38+ Gut single cell


title: 031U_MSCB-099


title: WTCHG_380869_204251: M38+ Gut single cell


title: 031U_MSCB-098


title: 031U_MSCB-110


title: 031U_MSCB-097


title: 031U_MSCB-096


title: WTCHG_380869_202251: M38+ Gut single cell


title: WTCHG_380869_203251: M38+ Gut single cell bulk

source_name: Gut IEL bulk

value: Gut intraepithelium (IEL) bulk

value: IEL bulk_27


title: WTCHG_380869_201251: M38+ Gut single cell

value: Gut intraepithelium (IEL)


title: 031U_MSCB-094


title: 031U_MSCB-095


title: WTCHG_380869_228250: M38+ Spleen single cell


title: 031U_MSCB-093


title: 031U_MSCB-104


title: WTCHG_380869_226250: M38+ Spleen single cell


title: 031U_MSCB-092


title: WTCHG_380869_227250: M38+ Spleen single cell


title: WTCHG_380869_226251: M38+ Spleen single cell


title: WTCHG_380869_225250: M38+ Spleen single cell


title: 031U_MSCB-090


title: WTCHG_380869_208250: M38+ Spleen single cell


title: WTCHG_380869_205251: M38+ Gut single cell


title: WTCHG_380869_207251: M38+ Gut single cell


title: 031U_MSCB-088


title: WTCHG_380869_206250: M38+ Spleen single cell


title: 031U_MSCB-087


title: WTCHG_380869_207250: M38+ Spleen single cell


title: 031U_MSCB-085


title: WTCHG_380869_203250: M38+ Gut single cell


title: WTCHG_380869_205250: M38+ Spleen single cell


title: 031U_MSCB-106


title: WTCHG_380869_204250: M38+ Gut single cell


title: 031U_MSCB-086


title: WTCHG_380869_202250: M38+ Gut single cell


title: 031U_MSCB-083


title: 031U_MSCB-091


title: 031U_MSCB-082


title: 031U_MSCB-081


title: WTCHG_380869_228249: M38+ Gut single cell


title: 031U_MSCB-080


title: 031U_MSCB-078


title: 031U_MSCB-079


title: 031U_MSCB-089


title: WTCHG_380869_208249: M38+ Gut single cell


title: WTCHG_380869_207249: M38+ Gut single cell


title: WTCHG_380869_227249: M38+ Gut single cell


title: WTCHG_380869_225249: M38+ Gut single cell


title: WTCHG_380869_206249: M38+ Gut single cell