title: Chinese horse breeds_Series 198: ZT29

tag: gender

tag: age


title: EXR-MBITZ1CTOT2SAMPB17A3-BS: CTOT04_02_Urine_17-3

status: Public on Mar 16 2019

type: SRA

city: Ann Arbor

first: Markus

last: Bitzer

state: MI

address: 1500 E Medical Center Dr SPC 5361

country: USA

institute: University of Michigan

library_source: transcriptomic

data_processing:
All FASTQ files were processed uniformly through the extra-cellular RNA processing toolkit (exceRpt). exceRpt is available at https://github.gersteinlab.org/exceRpt/.
Genome_build: hg19
Supplementary_files_format_and_content: The processed data archive contains RPM read counts for miRNAs / piRNAs / tRNAs / GENCODE annotations / circular RNAs.

molecule: total RNA

organism: Homo sapiens

source_name: Urine

extract_protocol:
450 ul biofluid sample were mixed with 105 ul buffer P, digested with 28 ul Proteinase K working solution at 65C for 8 minutes, extracted with 517 ul ED2 working solution, cooled to 10C, phase separation was induced after adding 110 ul chloroform, approx. 600 ul aqueous supernatants were mixed with 1200 ul buffer VB2G, loaded on Zymo-I 96-well silica matrix plate, washed twice with 970 ul EWL, once with 970 ul 100% ethanol, twice with 500 ul 80% ethanol and eluted into 20 ul TrisHCl pH 7.5. Protocol was executed on epMotion 5075 liquid handling system. Low speed centrifugation (1200 g x 10 minutes) was performed for cell removal.
No Kit was used. Multiplexed Small RNA library preparation protocol developed by Tuschl lab. Adenylated DNA adapters each containing a unique 5-nt barcode sequence were ligated to the 3end of the RNA overnight at 4C.The barcoded adapters allow 24 individual RNA samples to be pooled into one lane.The pooled samples were purified on a 15% polyacrylamide gel and size-selection was guided by radiolabeled RNA markers corresponding to a sRNA size of 19-30 nt. Next, a 26-nt RNA adapter compatible with Illumina sequencing was ligated to the 5end of the RNA at 37C for 1 hour and samples were purified on a 12% polyacrylamide gel.  The cDNA libraries were then generated by reverse transcription and amplified using up to 20 PCR cycles, and the final libraries ranging from 90-101 nt were purified on a 2.5% agarose gel and sequenced in a single Illumina HiSeq lane.

tag: diagnosis

value: nephrotic syndrome

tag: tissue

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1371

type: RNA

city: Diepenbeek

first: Tim

middle: S

last: Nawrot

address: Agoralaan building D

department: Centre for Environmental Sciences

country: Belgium

institute: Hasselt University

hyb_protocol: Cyanine-3 labelled cRNA was hybridized onto Agilent Whole Human Genome 8 x 60K microarrays.

scan_protocol: Microarray signals were detected using the Agilent DNA G2505C Microarray Scanner (Agilent Technologies). Scan images were converted into TXT files using the Agilent Feature Extraction Software (Version 10.7.3.1, Agilent Technologies, Amstelveen, The Netherlands).

data_processing: An in-house developed quality control pipeline in R software was used to preprocess raw data as follows: local background correction, omission of controls, flagging of bad spots and spots with too low intensity, log2 transformation and quantile normalization using arrayQC. More information about the flagging and the R-scripts of the pipeline are available at https://github.com/BiGCAT-UM/arrayQC_Module . Further preprocessing included removal of probes showing >30% flagged data, merging of replicate probes based on the median, and imputation of missing values by means of K-nearest neighbor imputation (K = 15). Batch effects were corrected for by using an empirical Bayes method (ComBat) (Johnson et al., 2007). For genes with multiple probes, the probe with the largest interquartile range was selected. From the resulting 18,847 probes, only those with expression levels above 6 (in the log2 scale) in a minimum of 30 samples were kept, leaving 14,040 genes for further analysis.

source_name: Placental tissue

label_protocol: 0.2 μg total RNA was used to synthesize fluorescent cyanine-3-labeled cRNA following the Agilent one-color Quick-Amp labeling protocol (Agilent Technologies).

extract_protocol: Total RNA was extracted from one placental tissue biopsy using the miRNeasy mini kit (Qiagen, Venlo, The Netherlands) according to the manufacturer’s protocol. RNase-Free DNase treatment was performed on RNA samples according to the manufacturer’s instructions (Qiagen, Venlo, The Netherlands). RNA quantity and purity were assessed by spectrophotometry (Nanodrop 1000, Isogen Life Science, De Meern, the Netherlands) and RNA integrity by Agilent 2100 Bioanalyzer (Agilent Technologies, Amstelveen, the Netherlands). Samples with RNA Integrity Number below 6 were excluded from further analysis.

treatment_protocol: Placental tissue was collected within 1 hour after delivery. Four standardized biopsies were taken from the fetal side, at fixed locations across the middle point of the placenta around 4 cm distance from the umbilical cord (Janssen et al., 2017). The collected biopsies were stored in RNA later (ThermoFisher Scientific, Massachusetts, USA) at 4°C for at least 12 hours and maximally 24 hours, followed by storage at -20°C.

value: Placenta

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: Male

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

tag: parity

value: 2 (2 children)

tag: maternal age (year)

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 1365

tag: tissue

value: 1 (non-European)

value: 3 (3 children)

value: 1 (stopped smoking before pregnancy)


title: EXR-MBITZ1CTOT2SAMPB17A1-BS: CTOT04_02_Urine_17-1

tag: diagnosis

tag: condition

tag: anatomical location

tag: rna source

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1375

tag: labeling date

tag: hybridization date

tag: date delivery


title: Placental tissue ID 1292

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex


title: Chinese horse breeds_Series 197: ZT27

type: genomic

city: Beijing

first: Hongying

last: Ma

address: yuanmingyuan road NO.2

country: China

institute: China agriculture university

description: Genomic DNA extracted from blood was genotyped with the Illumina Equine SNP70 Bead Array

hyb_protocol: Not provided

scan_protocol: After allele-specific staining BeadChip arrays  and scanned on  Illumina BeadScand..

data_processing:
Genomic DNA extracted from blood was genotyped using the Illumina Equine SNP70 Bead Array.
Image data was analyzed using GenomeStudio Software.

label: not provided

molecule: genomic DNA

organism: Equus caballus

source_name: Zhaotong horse

label_protocol: Not provided

extract_protocol: Extraction of genomic DNA from fresh frozen tissue was performed using proteinase K and repeated phenol-chloroform extraction. Integrity and purity of DNA verified by agarose gel electrophoresis and A260/280 ratio.

treatment_protocol: The samples were obtained following the principles approved by the Animal Care and Use Committee of China Agricultural University (Permit Number: XK257)

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT2SAMPB16A22-BS: CTOT04_02_Urine_16-22

value: nephrotic syndrome

value: urine

tag: 3' adapter sequence

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A23-BS: CTOT04_02_Urine_16-23

value: Transplanted kidney present

value: Urinary system structure

value: total cell-free biofluid RNA

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 196: ZT24


title: EXR-MBITZ1CTOT2SAMPB16A21-BS: CTOT04_02_Urine_16-21

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 195: ZT21


title: EXR-MBITZ1CTOT2SAMPB17A4-BS: CTOT04_02_Urine_17-4

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1290

value: Placenta

value: Female

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT2SAMPB16A19-BS: CTOT04_02_Urine_16-19

tag: diagnosis

tag: tissue

tag: condition

tag: anatomical location

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A17-BS: CTOT04_02_Urine_16-17

tag: rna source

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A18-BS: CTOT04_02_Urine_16-18

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB17A2-BS: CTOT04_02_Urine_17-2

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1250

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT2SAMPB16A16-BS: CTOT04_02_Urine_16-16

value: nephrotic syndrome

value: urine

tag: 3' adapter sequence

value: TTACATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 193: ZT18

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: Placental tissue ID 1323

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)

tag: ethnicity

tag: parity

value: 2 (2 children)

tag: maternal age (year)


title: EXR-MBITZ1CTOT2SAMPB16A15-BS: CTOT04_02_Urine_16-15

tag: diagnosis

tag: tissue

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

value: total cell-free biofluid RNA

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1242

value: Placenta

tag: labeling date

tag: hybridization date

tag: date delivery

value: Female

value: 0 (European)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT2SAMPB16A24-BS: CTOT04_02_Urine_16-24

tag: rna source

tag: 3' adapter sequence

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 191: ZT11

tag: gender

tag: age


title: EXR-MBITZ1CTOT2SAMPB16A14-BS: CTOT04_02_Urine_16-14

value: TATCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A12-BS: CTOT04_02_Urine_16-12

value: TAATATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A11-BS: CTOT04_02_Urine_16-11

value: nephrotic syndrome

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A20-BS: CTOT04_02_Urine_16-20

value: urine

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 190: ZT10

value: unknown

value: blood


title: Chinese horse breeds_Series 194: ZT19

value: 3 years


title: Placental tissue ID 1236

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)

value: 2 (2 children)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT2SAMPB16A10-BS: CTOT04_02_Urine_16-10

tag: diagnosis

tag: tissue

tag: condition

value: Transplanted kidney present

value: Urinary system structure

value: total cell-free biofluid RNA

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A8-BS: CTOT04_02_Urine_16-8

tag: anatomical location

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 189: ZT37


title: Placental tissue ID 1239

value: Placenta

tag: labeling date

tag: hybridization date

tag: date delivery

value: Female

tag: ethnicity

value: 0 (European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)


title: Placental tissue ID 1230

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 188: ZT32

tag: gender

tag: age


title: EXR-MBITZ1CTOT2SAMPB16A6-BS: CTOT04_02_Urine_16-6

value: nephrotic syndrome

value: urine

tag: rna source

tag: 3' adapter sequence

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A13-BS: CTOT04_02_Urine_16-13

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A5-BS: CTOT04_02_Urine_16-5

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A4-BS: CTOT04_02_Urine_16-4

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 187: ZT23

value: unknown

value: blood

value: 3 years


title: Placental tissue ID 1229

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: Male

tag: gestational age (month)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT2SAMPB16A7-BS: CTOT04_02_Urine_16-7

tag: diagnosis

tag: tissue

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

value: total cell-free biofluid RNA

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1227

value: Placenta

tag: labeling date

tag: hybridization date

tag: date delivery

tag: ethnicity

value: 0 (European)

tag: parity

value: 2 (2 children)

tag: maternal age (year)


title: EXR-MBITZ1CTOT2SAMPB16A2-BS: CTOT04_02_Urine_16-2

value: nephrotic syndrome

value: urine

tag: rna source

tag: 3' adapter sequence

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB16A3-BS: CTOT04_02_Urine_16-3

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 192: ZT16

tag: gender

tag: age


title: Placental tissue ID 1225

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)

value: 1 (1 child)

tag: maternal smoking

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT2SAMPB16A1-BS: CTOT04_02_Urine_16-1

tag: diagnosis

tag: tissue

tag: condition

tag: anatomical location

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1224

tag: labeling date

tag: hybridization date

tag: date delivery

value: Female

tag: ethnicity

value: 1 (non-European)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 1223

tag: parity

tag: maternal age (year)

value: 0 (never smoked)


title: Chinese horse breeds_Series 185: ZT1

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT2SAMPB15A23-BS: CTOT04_02_Urine_15-23

value: Transplanted kidney present

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A22-BS: CTOT04_02_Urine_15-22

value: nephrotic syndrome

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1221

value: Placenta

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)

value: 0 (European)

value: 2 (2 children)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 184: TC37

source_name: Tengchong horse

tag: tissue


title: Placental tissue ID 1218

tag: labeling date

tag: hybridization date

tag: date delivery

value: Male

value: 1 (1 child)


title: Chinese horse breeds_Series 183: TC36


title: EXR-MBITZ1CTOT2SAMPB15A20-BS: CTOT04_02_Urine_15-20

tag: diagnosis

value: urine

tag: condition

tag: anatomical location

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A19-BS: CTOT04_02_Urine_15-19

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A17-BS: CTOT04_02_Urine_15-17

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 181: TC33

tag: gender

value: unknown

value: blood


title: EXR-MBITZ1CTOT2SAMPB15A18-BS: CTOT04_02_Urine_15-18

value: Transplanted kidney present

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A15-BS: CTOT04_02_Urine_15-15

value: Urinary system structure

value: total cell-free biofluid RNA

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A14-BS: CTOT04_02_Urine_15-14

value: nephrotic syndrome

value: TATCATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 186: ZT2

tag: age

value: 3 years


title: EXR-MBITZ1CTOT2SAMPB15A13-BS: CTOT04_02_Urine_15-13

tag: rna source

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A24-BS: CTOT04_02_Urine_15-24

tag: 3' adapter sequence

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 180: TC32


title: Placental tissue ID 1217

value: Placenta

tag: maternal pre-pregnancy bmi

value: Female

tag: ethnicity

value: 0 (European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT2SAMPB15A11-BS: CTOT04_02_Urine_15-11

tag: tissue

value: urine

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A9-BS: CTOT04_02_Urine_15-9

value: Transplanted kidney present

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A16-BS: CTOT04_02_Urine_15-16

value: Urinary system structure

value: TTACATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1197

tag: labeling date

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)

value: 1 (non-European)

value: 4 (4 children)

tag: maternal smoking

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: Placental tissue ID 1192

tag: hybridization date

tag: date delivery

value: 2 (2 children)


title: EXR-MBITZ1CTOT2SAMPB15A8-BS: CTOT04_02_Urine_15-8

tag: diagnosis

value: nephrotic syndrome

tag: condition

tag: anatomical location

tag: rna source

value: total cell-free biofluid RNA

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1206

value: Placenta

tag: maternal pre-pregnancy bmi

value: Male

tag: ethnicity

tag: parity

value: 1 (yes)


title: Chinese horse breeds_Series 178: TC25

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: Placental tissue ID 1215

tag: tissue

tag: labeling date

value: Female

value: 0 (European)

value: 1 (1 child)

tag: maternal age (year)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 182: TC35


title: EXR-MBITZ1CTOT2SAMPB15A7-BS: CTOT04_02_Urine_15-7

value: urine

value: Transplanted kidney present

value: Urinary system structure

tag: 3' adapter sequence

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 177: TC16


title: EXR-MBITZ1CTOT2SAMPB15A6-BS: CTOT04_02_Urine_15-6

value: nephrotic syndrome

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 176: TC21


title: EXR-MBITZ1CTOT2SAMPB15A4-BS: CTOT04_02_Urine_15-4

value: total cell-free biofluid RNA

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A5-BS: CTOT04_02_Urine_15-5

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A3-BS: CTOT04_02_Urine_15-3

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1185

value: Placenta

tag: hybridization date

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)

value: 2 (2 children)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Placental tissue ID 1183

tag: date delivery

tag: maternal pre-pregnancy bmi


title: EXR-MBITZ1CTOT2SAMPB15A12-BS: CTOT04_02_Urine_15-12

tag: diagnosis

tag: condition

tag: anatomical location

tag: rna source

value: TAATATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 173: TC11

tag: gender

value: unknown

tag: tissue

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT2SAMPB14A21-BS: CTOT04_02_Urine_14-21

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 179: TC31


title: EXR-MBITZ1CTOT2SAMPB15A2-BS: CTOT04_02_Urine_15-2

value: urine

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A24-BS: CTOT04_02_Urine_14-24

value: Transplanted kidney present

value: Urinary system structure

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB19A1-BS: CTOT04_02_Urine_19-1

value: nephrotic syndrome

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 175: TC19


title: EXR-MBITZ1CTOT2SAMPB14A23-BS: CTOT04_02_Urine_14-23

value: total cell-free biofluid RNA

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A1-BS: CTOT04_02_Urine_15-1


title: EXR-MBITZ1CTOT2SAMPB14A20-BS: CTOT04_02_Urine_14-20

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A22-BS: CTOT04_02_Urine_14-22

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 172: TC10


title: Placental tissue ID 1186

value: Placenta

tag: labeling date

value: Female

tag: ethnicity

value: 0 (European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 174: TC12

value: unknown

value: blood

value: 3 years


title: EXR-MBITZ1CTOT2SAMPB14A19-BS: CTOT04_02_Urine_14-19

value: urine

value: Transplanted kidney present

tag: 3' adapter sequence

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 170: TC8


title: Chinese horse breeds_Series 171: TC9


title: EXR-MBITZ1CTOT2SAMPB14A16-BS: CTOT04_02_Urine_14-16

value: nephrotic syndrome

value: Urinary system structure

value: TTACATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1172

tag: hybridization date

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)

value: 1 (non-European)

value: 3 (3 children)

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: Placental tissue ID 1174

value: Placenta

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male


title: Placental tissue ID 1168

tag: tissue

value: Female

value: 0 (European)

value: 2 (2 children)


title: EXR-MBITZ1CTOT2SAMPB14A15-BS: CTOT04_02_Urine_14-15

tag: diagnosis

tag: condition

tag: anatomical location

tag: rna source

value: total cell-free biofluid RNA

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1180

tag: labeling date

tag: ethnicity

tag: parity

tag: maternal age (year)

value: 2 (smoked during pregnancy)


title: Placental tissue ID 1162

tag: hybridization date

value: 1 (1 child)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 1182

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)


title: Chinese horse breeds_Series 169: TC7

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT2SAMPB14A14-BS: CTOT04_02_Urine_14-14

value: nephrotic syndrome

tag: tissue

value: urine

value: Transplanted kidney present

value: Urinary system structure

tag: 3' adapter sequence

value: TATCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A13-BS: CTOT04_02_Urine_14-13

tag: diagnosis

tag: condition

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A17-BS: CTOT04_02_Urine_14-17

tag: anatomical location

tag: rna source

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A12-BS: CTOT04_02_Urine_14-12

value: TAATATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A9-BS: CTOT04_02_Urine_14-9

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A10-BS: CTOT04_02_Urine_14-10

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A8-BS: CTOT04_02_Urine_14-8

value: total cell-free biofluid RNA

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A7-BS: CTOT04_02_Urine_14-7

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A5-BS: CTOT04_02_Urine_14-5

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1166

value: Placenta

tag: labeling date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male

tag: ethnicity

value: 0 (European)

value: 1 (1 child)

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 166: TC4

value: unknown

value: blood

value: 3 years


title: Placental tissue ID 1158

tag: hybridization date

tag: birth weight (gram)

value: 1 (non-European)

tag: parity

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT2SAMPB14A4-BS: CTOT04_02_Urine_14-4

value: nephrotic syndrome

tag: tissue

value: urine

value: Transplanted kidney present

value: Urinary system structure

tag: 3' adapter sequence

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 165: TC3

tag: gender

tag: age


title: Placental tissue ID 1159

tag: Sex

tag: gestational age (month)

value: 3 (3 children)


title: EXR-MBITZ1CTOT2SAMPB14A3-BS: CTOT04_02_Urine_14-3

tag: diagnosis

tag: condition

tag: anatomical location

tag: rna source

value: total cell-free biofluid RNA

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 164: TC2


title: EXR-MBITZ1CTOT2SAMPB14A1-BS: CTOT04_02_Urine_14-1

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A2-BS: CTOT04_02_Urine_14-2

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1153

value: Placenta

tag: labeling date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male

tag: ethnicity

value: 0 (European)

value: 2 (2 children)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 168: TC6

value: unknown

value: blood

value: 3 years


title: Placental tissue ID 1157

tag: hybridization date

tag: birth weight (gram)

tag: parity

tag: maternal age (year)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 163: TC1

tag: gender

tag: tissue

tag: age


title: Chinese horse breeds_Series 167: TC5


title: Placental tissue ID 1151

tag: Sex

value: Female

tag: gestational age (month)

value: 1 (1 child)

value: 1 (stopped smoking before pregnancy)


title: EXR-MBITZ1CTOT2SAMPB13A24-BS: CTOT04_02_Urine_13-24

tag: diagnosis

value: nephrotic syndrome

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

tag: rna source

tag: 3' adapter sequence

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1152

tag: labeling date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: ethnicity

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 162: LJ6

source_name: Lijiang horse


title: EXR-MBITZ1CTOT2SAMPB13A23-BS: CTOT04_02_Urine_13-23

value: total cell-free biofluid RNA

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A22-BS: CTOT04_02_Urine_13-22

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1150

value: Placenta

tag: hybridization date

tag: birth weight (gram)

value: 1 (non-European)

tag: parity

tag: maternal age (year)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT2SAMPB14A6-BS: CTOT04_02_Urine_14-6

tag: diagnosis

tag: tissue

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB15A21-BS: CTOT04_02_Urine_15-21

tag: condition

tag: anatomical location

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A21-BS: CTOT04_02_Urine_13-21

tag: rna source

tag: 3' adapter sequence


title: Chinese horse breeds_Series 161: LJ24

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: Placental tissue ID 1149

tag: labeling date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: Sex

value: Female

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

value: 4 (4 children)

value: 0 (never smoked)


title: Chinese horse breeds_Series 160: LJ7


title: Chinese horse breeds_Series 159: LJ3


title: Placental tissue ID 1143

tag: hybridization date

tag: birth weight (gram)

value: Male

tag: parity

value: 2 (2 children)

tag: maternal age (year)

tag: maternal smoking

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT2SAMPB13A19-BS: CTOT04_02_Urine_13-19

tag: diagnosis

value: nephrotic syndrome

tag: tissue

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

value: total cell-free biofluid RNA

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A18-BS: CTOT04_02_Urine_13-18

tag: rna source

tag: 3' adapter sequence

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A17-BS: CTOT04_02_Urine_13-17

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 158: LJ11

tag: gender

value: unknown

value: blood

tag: age


title: EXR-MBITZ1CTOT2SAMPB13A14-BS: CTOT04_02_Urine_13-14

value: TATCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A15-BS: CTOT04_02_Urine_13-15

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 157: LJ19

value: 3 years


title: Placental tissue ID 1140

value: Placenta

tag: labeling date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: Sex

value: 0 (European)

value: 1 (1 child)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 1137

tag: hybridization date

tag: birth weight (gram)

value: Male

tag: gestational age (month)

tag: ethnicity

tag: parity

tag: maternal age (year)

value: 0 (never smoked)


title: EXR-MBITZ1CTOT2SAMPB13A13-BS: CTOT04_02_Urine_13-13

tag: diagnosis

value: nephrotic syndrome

tag: tissue

value: urine

tag: condition

tag: anatomical location

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A9-BS: CTOT04_02_Urine_13-9

value: Transplanted kidney present

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A8-BS: CTOT04_02_Urine_13-8

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1136

tag: labeling date

tag: date delivery

value: 2 (2 children)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 156: LJ18

tag: gender

value: unknown

value: blood

tag: age


title: EXR-MBITZ1CTOT2SAMPB13A10-BS: CTOT04_02_Urine_13-10

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 155: LJ64

value: 3 years


title: EXR-MBITZ1CTOT2SAMPB13A7-BS: CTOT04_02_Urine_13-7

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A11-BS: CTOT04_02_Urine_13-11

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A16-BS: CTOT04_02_Urine_13-16

value: TTACATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1134

value: Placenta

tag: hybridization date

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: Male

value: 0 (European)

value: 1 (1 child)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT2SAMPB13A20-BS: CTOT04_02_Urine_13-20

tag: diagnosis

value: nephrotic syndrome

tag: tissue

value: urine

value: Transplanted kidney present

value: Urinary system structure

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 154: LJ17

value: unknown


title: Placental tissue ID 1129

tag: gestational age (month)

tag: ethnicity

tag: parity

tag: maternal age (year)


title: EXR-MBITZ1CTOT2SAMPB13A6-BS: CTOT04_02_Urine_13-6

tag: condition

tag: anatomical location

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A5-BS: CTOT04_02_Urine_13-5

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB13A4-BS: CTOT04_02_Urine_13-4

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 153: LJ27

tag: gender

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT2SAMPB13A3-BS: CTOT04_02_Urine_13-3

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1135

value: Placenta

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male

value: 1 (non-European)

value: 3 (3 children)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT2SAMPB13A2-BS: CTOT04_02_Urine_13-2

tag: diagnosis

value: nephrotic syndrome

tag: tissue

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 152: LJ39


title: EXR-MBITZ1CTOT2SAMPB13A1-BS: CTOT04_02_Urine_13-1

value: urine

value: Transplanted kidney present

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB11A11-BS: CTOT04_01_Urine_11-11

value: Urinary system structure

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1127

tag: birth weight (gram)

tag: Sex

value: Female

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

value: 1 (1 child)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 1126

tag: parity

tag: maternal age (year)


title: EXR-MBITZ1CTOT1SAMPB11A8-BS: CTOT04_01_Urine_11-8

tag: condition

tag: anatomical location

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB11A10-BS: CTOT04_01_Urine_11-10

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB11A9-BS: CTOT04_01_Urine_11-9

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 150: LJ25

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB11A7-BS: CTOT04_01_Urine_11-7

value: nephrotic syndrome

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 149: LJ15


title: Placental tissue ID 1124

value: Placenta

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male

value: 2 (2 children)

tag: maternal smoking

value: 2 (smoked during pregnancy)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB11A6-BS: CTOT04_01_Urine_11-6

tag: diagnosis

tag: tissue

value: urine

value: Transplanted kidney present

value: Urinary system structure

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB11A5-BS: CTOT04_01_Urine_11-5

value: total cell-free biofluid RNA

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 148: LJ35


title: Placental tissue ID 1122

tag: birth weight (gram)

tag: Sex

value: Female

tag: gestational age (month)

tag: ethnicity

value: 1 (non-European)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB11A4-BS: CTOT04_01_Urine_11-4

tag: condition

tag: anatomical location

tag: rna source

tag: 3' adapter sequence

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 146: LJ29

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: Placental tissue ID 1118

value: Placenta

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: 0 (European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)


title: Placental tissue ID 1121

tag: tissue

tag: birth weight (gram)

tag: Sex

value: Male

tag: maternal smoking

value: 2 (smoked during pregnancy)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB11A1-BS: CTOT04_01_Urine_11-1

tag: diagnosis

value: nephrotic syndrome

value: urine

tag: condition

value: Transplanted kidney present

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB10A24-BS: CTOT04_01_Urine_10-24

tag: anatomical location

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB11A2-BS: CTOT04_01_Urine_11-2

tag: 3' adapter sequence

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB11A3-BS: CTOT04_01_Urine_11-3

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB10A23-BS: CTOT04_01_Urine_10-23

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 151: LJ46

tag: gender

value: unknown

value: blood

tag: age


title: Placental tissue ID 1115

value: Placenta

tag: labeling date

tag: hybridization date

tag: gestational age (month)

tag: ethnicity

value: 1 (non-European)

value: 4 (4 children)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 145: LJ38

tag: tissue

value: 3 years


title: Chinese horse breeds_Series 147: LJ21


title: EXR-MBITZ1CTOT1SAMPB10A22-BS: CTOT04_01_Urine_10-22

value: nephrotic syndrome

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB10A20-BS: CTOT04_01_Urine_10-20

value: urine

value: Transplanted kidney present

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 144: LJ32


title: EXR-MBITZ1CTOT1SAMPB10A19-BS: CTOT04_01_Urine_10-19

value: Urinary system structure

value: total cell-free biofluid RNA

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB10A21-BS: CTOT04_01_Urine_10-21

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1113

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: Female

value: 0 (European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)

value: 1 (yes)


title: Chinese horse breeds_Series 143: LJ28

value: unknown

value: blood


title: EXR-MBITZ1CTOT1SAMPB10A18-BS: CTOT04_01_Urine_10-18

tag: diagnosis

tag: condition

tag: anatomical location

tag: rna source

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB10A16-BS: CTOT04_01_Urine_10-16

value: nephrotic syndrome

tag: 3' adapter sequence

value: TTACATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB10A17-BS: CTOT04_01_Urine_10-17

value: urine

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 142: LJ63

tag: gender

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB10A15-BS: CTOT04_01_Urine_10-15

value: Transplanted kidney present

value: Urinary system structure

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 141: LJ62


title: Placental tissue ID 1114

value: Placenta

tag: labeling date

tag: hybridization date

value: Male

tag: gestational age (month)

tag: ethnicity

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB10A13-BS: CTOT04_01_Urine_10-13

tag: tissue

value: total cell-free biofluid RNA

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 140: LJ60


title: EXR-MBITZ1CTOT1SAMPB10A12-BS: CTOT04_01_Urine_10-12

value: TAATATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB10A14-BS: CTOT04_01_Urine_10-14

value: TATCATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 139: LJ58

value: unknown

value: blood


title: EXR-MBITZ1CTOT1SAMPB10A9-BS: CTOT04_01_Urine_10-9

value: nephrotic syndrome

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1105

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: Female

value: 1 (non-European)

value: 1 (1 child)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 1103

value: 0 (European)

tag: parity

tag: maternal age (year)


title: EXR-MBITZ1CTOT1SAMPB10A11-BS: CTOT04_01_Urine_10-11

tag: diagnosis

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

tag: rna source

tag: 3' adapter sequence

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 138: LJ57

tag: gender

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB10A10-BS: CTOT04_01_Urine_10-10

value: total cell-free biofluid RNA

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB10A8-BS: CTOT04_01_Urine_10-8

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1099

value: Placenta

tag: labeling date

tag: hybridization date

value: Male

tag: gestational age (month)

tag: ethnicity

value: 3 (3 children)

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB10A6-BS: CTOT04_01_Urine_10-6

value: nephrotic syndrome

tag: tissue

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 136: LJ53

value: unknown

value: blood


title: Chinese horse breeds_Series 137: LJ55


title: EXR-MBITZ1CTOT1SAMPB10A5-BS: CTOT04_01_Urine_10-5

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB10A4-BS: CTOT04_01_Urine_10-4

value: urine

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1101

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: Female

value: 0 (European)

value: 1 (1 child)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 1104

value: 1 (non-European)

tag: parity

value: 2 (2 children)

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)


title: Placental tissue ID 1095

value: Placenta


title: Placental tissue ID 1084

value: Male


title: Placental tissue ID 1088


title: Placental tissue ID 1090


title: EXR-MBITZ1CTOT1SAMPB10A3-BS: CTOT04_01_Urine_10-3

tag: diagnosis

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 135: LJ4

tag: gender

value: unknown

tag: age

value: 3 years


title: Placental tissue ID 1093

tag: labeling date

tag: hybridization date

tag: gestational age (month)

tag: ethnicity

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB10A2-BS: CTOT04_01_Urine_10-2

value: nephrotic syndrome

tag: tissue

value: urine

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT2SAMPB14A18-BS: CTOT04_02_Urine_14-18

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 134: LJ22

value: blood


title: Placental tissue ID 1082

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: 0 (European)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB10A1-BS: CTOT04_01_Urine_10-1

tag: diagnosis

tag: condition

tag: anatomical location

tag: rna source

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A24-BS: CTOT04_01_Urine_9-24

tag: 3' adapter sequence

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A23-BS: CTOT04_01_Urine_9-23

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A22-BS: CTOT04_01_Urine_9-22

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 133: LJ49

tag: gender

tag: age


title: EXR-MBITZ1CTOT1SAMPB10A7-BS: CTOT04_01_Urine_10-7

value: Transplanted kidney present

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 132: LJ58


title: EXR-MBITZ1CTOT1SAMPB9A21-BS: CTOT04_01_Urine_9-21

value: Urinary system structure

value: total cell-free biofluid RNA

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 131: BS56

source_name: Baise horse

value: unknown

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB9A20-BS: CTOT04_01_Urine_9-20

value: nephrotic syndrome

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A18-BS: CTOT04_01_Urine_9-18

value: urine


title: Chinese horse breeds_Series 130: BS39


title: EXR-MBITZ1CTOT1SAMPB9A19-BS: CTOT04_01_Urine_9-19

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A17-BS: CTOT04_01_Urine_9-17

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1076

value: Placenta

tag: labeling date

tag: hybridization date

value: Male

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)


title: EXR-MBITZ1CTOT1SAMPB9A16-BS: CTOT04_01_Urine_9-16

tag: tissue

value: Transplanted kidney present

value: TTACATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1081

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: Female

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: Placental tissue ID 1075

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 1057


title: EXR-MBITZ1CTOT1SAMPB9A15-BS: CTOT04_01_Urine_9-15

tag: diagnosis

tag: condition

tag: anatomical location

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 129: BS61

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB9A14-BS: CTOT04_01_Urine_9-14

value: nephrotic syndrome

value: urine

value: TATCATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 128: BS54


title: Placental tissue ID 1056

value: Placenta

tag: labeling date

tag: hybridization date

tag: gestational age (month)

tag: ethnicity

tag: parity

tag: maternal age (year)


title: EXR-MBITZ1CTOT1SAMPB9A13-BS: CTOT04_01_Urine_9-13

tag: tissue

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A12-BS: CTOT04_01_Urine_9-12

value: TAATATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A10-BS: CTOT04_01_Urine_9-10

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 127: BS25


title: EXR-MBITZ1CTOT1SAMPB9A9-BS: CTOT04_01_Urine_9-9

value: Transplanted kidney present

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 126: BS50


title: EXR-MBITZ1CTOT1SAMPB9A7-BS: CTOT04_01_Urine_9-7

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A8-BS: CTOT04_01_Urine_9-8

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 125: BS34


title: EXR-MBITZ1CTOT1SAMPB9A6-BS: CTOT04_01_Urine_9-6

value: Urinary system structure

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A5-BS: CTOT04_01_Urine_9-5

value: total cell-free biofluid RNA

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A4-BS: CTOT04_01_Urine_9-4

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 123: BS4

value: unknown

value: blood

value: 3 years


title: Placental tissue ID 1048

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: Female

value: 0 (European)

value: 3 (3 children)

tag: maternal smoking

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: Placental tissue ID 1055

value: Placenta

value: 2 (2 children)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 1046

value: Male

value: 1 (1 child)


title: Placental tissue ID 1047

value: 1 (non-European)

value: 1 (yes)


title: Chinese horse breeds_Series 122: BS46

tag: gender


title: EXR-MBITZ1CTOT1SAMPB9A11-BS: CTOT04_01_Urine_9-11

tag: diagnosis

value: nephrotic syndrome

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1050

tag: labeling date

tag: hybridization date

tag: gestational age (month)

tag: ethnicity

tag: parity


title: Placental tissue ID 1045

tag: tissue

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

value: Female

tag: maternal age (year)


title: Chinese horse breeds_Series 121: BS41

value: unknown

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB8A23-BS: CTOT04_01_Urine_8-23

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A24-BS: CTOT04_01_Urine_8-24

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A1-BS: CTOT04_01_Urine_9-1

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1038

value: Placenta

tag: Sex

value: Male

value: 0 (European)

value: 2 (2 children)

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 120: BS60

tag: gender


title: Placental tissue ID 1034

tag: labeling date

value: 4 (4 children)


title: Chinese horse breeds_Series 124: BS51


title: EXR-MBITZ1CTOT1SAMPB8A21-BS: CTOT04_01_Urine_8-21

tag: diagnosis

value: nephrotic syndrome

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

tag: rna source

tag: 3' adapter sequence

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A20-BS: CTOT04_01_Urine_8-20

tag: tissue

value: Urinary system structure

value: total cell-free biofluid RNA

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A19-BS: CTOT04_01_Urine_8-19

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1033

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Female

tag: gestational age (month)

tag: ethnicity

value: 1 (non-European)

tag: parity


title: EXR-MBITZ1CTOT1SAMPB9A2-BS: CTOT04_01_Urine_9-2

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 118: BS52

value: unknown

value: blood

tag: age

value: 3 years


title: Placental tissue ID 1032

value: Placenta

tag: birth weight (gram)

tag: Sex

value: Male

value: 0 (European)

value: 2 (2 children)

tag: maternal age (year)

tag: maternal smoking

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)

tag: gestational diabetes


title: EXR-MBITZ1CTOT1SAMPB8A18-BS: CTOT04_01_Urine_8-18

tag: diagnosis

value: nephrotic syndrome

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A16-BS: CTOT04_01_Urine_8-16

tag: tissue

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TTACATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB9A3-BS: CTOT04_01_Urine_9-3

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 117: BS43

tag: gender


title: Chinese horse breeds_Series 116: BS1


title: Placental tissue ID 1031

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: gestational age (month)

value: 3 (3 children)

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB8A14-BS: CTOT04_01_Urine_8-14

value: TATCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A22-BS: CTOT04_01_Urine_8-22

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A13-BS: CTOT04_01_Urine_8-13

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1030

value: Placenta

tag: birth weight (gram)

tag: Sex

tag: ethnicity

tag: parity

value: 1 (1 child)

tag: maternal age (year)

value: 0 (never smoked)


title: EXR-MBITZ1CTOT1SAMPB8A12-BS: CTOT04_01_Urine_8-12

tag: diagnosis

tag: condition

value: TAATATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 115: BS44

value: unknown

tag: tissue

value: blood

tag: age

value: 3 years


title: Placental tissue ID 1019

value: Male

value: 1 (non-European)

value: 2 (2 children)

tag: maternal smoking

tag: gestational weight gain (kilogram)

tag: gestational diabetes


title: Chinese horse breeds_Series 119: BS35

tag: gender


title: EXR-MBITZ1CTOT1SAMPB8A7-BS: CTOT04_01_Urine_8-7

value: nephrotic syndrome

value: urine

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1021

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Female

tag: gestational age (month)

value: 0 (European)

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB8A9-BS: CTOT04_01_Urine_8-9

tag: diagnosis

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A8-BS: CTOT04_01_Urine_8-8

tag: condition

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 114: BS33

tag: tissue


title: EXR-MBITZ1CTOT1SAMPB8A17-BS: CTOT04_01_Urine_8-17

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A6-BS: CTOT04_01_Urine_8-6

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 113: BS32

value: unknown

value: blood

tag: age


title: Placental tissue ID 1015

value: Placenta

tag: birth weight (gram)

tag: Sex

value: Male

tag: ethnicity

tag: parity

tag: maternal age (year)

tag: maternal smoking

value: 0 (never smoked)


title: EXR-MBITZ1CTOT1SAMPB8A15-BS: CTOT04_01_Urine_8-15

value: nephrotic syndrome

tag: anatomical location

tag: rna source

tag: 3' adapter sequence

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 112: BS31

tag: gender

value: 3 years


title: Chinese horse breeds_Series 111: BS28


title: Placental tissue ID 1010

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: 2 (2 children)

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)

tag: gestational diabetes


title: EXR-MBITZ1CTOT1SAMPB8A4-BS: CTOT04_01_Urine_8-4

tag: diagnosis

tag: tissue

value: urine

tag: condition

value: Transplanted kidney present

value: Urinary system structure

value: total cell-free biofluid RNA

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A3-BS: CTOT04_01_Urine_8-3

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A2-BS: CTOT04_01_Urine_8-2

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 999

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB8A5-BS: CTOT04_01_Urine_8-5

tag: anatomical location

tag: rna source

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB8A11-BS: CTOT04_01_Urine_8-11

tag: 3' adapter sequence

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 986

value: Placenta

tag: labeling date

value: Female

tag: parity

value: 1 (1 child)

tag: maternal age (year)

tag: maternal smoking


title: EXR-MBITZ1CTOT1SAMPB8A10-BS: CTOT04_01_Urine_8-10

value: nephrotic syndrome

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 1007

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male

value: 2 (2 children)

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB8A1-BS: CTOT04_01_Urine_8-1

tag: diagnosis

tag: tissue

value: urine

tag: condition

value: Transplanted kidney present

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A23-BS: CTOT04_01_Urine_7-23

value: Urinary system structure

value: total cell-free biofluid RNA

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A24-BS: CTOT04_01_Urine_7-24

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 109: BS26

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB7A22-BS: CTOT04_01_Urine_7-22

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 107: BS22


title: Placental tissue ID 952

value: Placenta

tag: birth weight (gram)

tag: Sex

value: Female

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB7A21-BS: CTOT04_01_Urine_7-21

value: nephrotic syndrome

tag: anatomical location

tag: rna source

tag: 3' adapter sequence

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A20-BS: CTOT04_01_Urine_7-20

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A19-BS: CTOT04_01_Urine_7-19

value: urine

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 947

tag: labeling date

tag: hybridization date

tag: date delivery

value: Male

value: 1 (non-European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)

tag: maternal smoking

value: 0 (never smoked)


title: Chinese horse breeds_Series 106: BS21

tag: gender

tag: tissue


title: Placental tissue ID 945

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

value: 2 (2 children)

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 110: BS27

value: unknown

value: blood

tag: age


title: Chinese horse breeds_Series 105: BS20

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB7A16-BS: CTOT04_01_Urine_7-16

tag: diagnosis

tag: condition

value: Transplanted kidney present

value: Urinary system structure

value: total cell-free biofluid RNA

value: TTACATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 104: BS19


title: EXR-MBITZ1CTOT1SAMPB7A15-BS: CTOT04_01_Urine_7-15

value: nephrotic syndrome

tag: anatomical location

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 944

value: Placenta

tag: Sex

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB7A17-BS: CTOT04_01_Urine_7-17

value: urine

tag: rna source

tag: 3' adapter sequence

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A14-BS: CTOT04_01_Urine_7-14

value: TATCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A12-BS: CTOT04_01_Urine_7-12

value: TAATATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A10-BS: CTOT04_01_Urine_7-10

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A13-BS: CTOT04_01_Urine_7-13

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 103: BS15

value: unknown


title: EXR-MBITZ1CTOT1SAMPB7A9-BS: CTOT04_01_Urine_7-9

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A11-BS: CTOT04_01_Urine_7-11

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 943

tag: labeling date

tag: hybridization date

tag: date delivery

value: Male

tag: parity

value: 1 (1 child)

tag: maternal age (year)

tag: maternal smoking

value: 0 (never smoked)

value: 1 (yes)


title: Placental tissue ID 976

tag: tissue

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

value: Female

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB7A18-BS: CTOT04_01_Urine_7-18

tag: diagnosis

value: nephrotic syndrome

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

value: total cell-free biofluid RNA

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 102: BS13

tag: gender

value: blood

tag: age

value: 3 years


title: Chinese horse breeds_Series 108: BS24


title: EXR-MBITZ1CTOT1SAMPB7A7-BS: CTOT04_01_Urine_7-7

value: urine

tag: rna source

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A8-BS: CTOT04_01_Urine_7-8

tag: 3' adapter sequence

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 920

value: Placenta

tag: labeling date

tag: Sex

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

value: 2 (2 children)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB7A6-BS: CTOT04_01_Urine_7-6

tag: tissue

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 100: BS3

value: unknown


title: Placental tissue ID 932

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Female

tag: parity

value: 1 (1 child)

tag: maternal age (year)

tag: maternal smoking

value: 1 (yes)


title: EXR-MBITZ1CTOT1SAMPB7A4-BS: CTOT04_01_Urine_7-4

tag: diagnosis

value: nephrotic syndrome

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 942

tag: birth weight (gram)

value: Male

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 99: CK40

source_name: Chakouyi horse

tag: gender

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB7A3-BS: CTOT04_01_Urine_7-3

value: urine

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A2-BS: CTOT04_01_Urine_7-2

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A24-BS: CTOT04_01_Urine_6-24

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A1-BS: CTOT04_01_Urine_7-1

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 97: CK24

value: unknown


title: Placental tissue ID 915

value: Placenta

tag: labeling date

tag: Sex

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

value: 1 (1 child)

value: 2 (smoked during pregnancy)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 910

tag: tissue

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Female

tag: parity

tag: maternal age (year)


title: Chinese horse breeds_Series 98: CK31


title: EXR-MBITZ1CTOT1SAMPB6A23-BS: CTOT04_01_Urine_6-23

tag: diagnosis

value: nephrotic syndrome

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 918

tag: birth weight (gram)

value: Male

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 101: BS5

tag: gender

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB6A22-BS: CTOT04_01_Urine_6-22

value: urine

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 96: CK36


title: EXR-MBITZ1CTOT1SAMPB6A19-BS: CTOT04_01_Urine_6-19

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB7A5-BS: CTOT04_01_Urine_7-5

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A21-BS: CTOT04_01_Urine_6-21

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 95: CK26

value: unknown


title: EXR-MBITZ1CTOT1SAMPB6A20-BS: CTOT04_01_Urine_6-20

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A18-BS: CTOT04_01_Urine_6-18

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 905

value: Placenta

tag: labeling date

tag: Sex

value: Female

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

value: 2 (2 children)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB6A16-BS: CTOT04_01_Urine_6-16

value: nephrotic syndrome

tag: tissue

value: Transplanted kidney present

value: TTACATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 94: CK68

value: blood

value: 3 years


title: Placental tissue ID 919

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: parity

value: 1 (1 child)

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)


title: EXR-MBITZ1CTOT1SAMPB6A17-BS: CTOT04_01_Urine_6-17

tag: diagnosis

value: urine

tag: condition

tag: anatomical location

value: Urinary system structure

value: total cell-free biofluid RNA

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A15-BS: CTOT04_01_Urine_6-15

tag: rna source

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 909

value: Placenta

tag: birth weight (gram)

value: Male

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 93: CK65

tag: gender

value: unknown

tag: age


title: Placental tissue ID 902

tag: labeling date

tag: Sex

value: Female

tag: gestational age (month)

tag: ethnicity

value: 1 (non-European)

value: 6 (6 children)

tag: gestational diabetes


title: Chinese horse breeds_Series 92: CK35

tag: tissue


title: Placental tissue ID 900

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: 0 (European)

tag: parity

value: 2 (2 children)

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB6A12-BS: CTOT04_01_Urine_6-12

tag: diagnosis

value: nephrotic syndrome

tag: condition

value: Transplanted kidney present

tag: anatomical location

tag: rna source

tag: 3' adapter sequence

value: TAATATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A13-BS: CTOT04_01_Urine_6-13

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A11-BS: CTOT04_01_Urine_6-11

value: urine

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 90: CK73

tag: gender

value: blood

tag: age

value: 3 years


title: Placental tissue ID 901

tag: labeling date

tag: birth weight (gram)

tag: Sex

value: 1 (1 child)

tag: maternal age (year)

tag: maternal smoking

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 89: CK54

tag: tissue


title: EXR-MBITZ1CTOT1SAMPB6A9-BS: CTOT04_01_Urine_6-9

value: Urinary system structure

value: total cell-free biofluid RNA

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A8-BS: CTOT04_01_Urine_6-8

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A14-BS: CTOT04_01_Urine_6-14

value: TATCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A10-BS: CTOT04_01_Urine_6-10

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 87: CK74

value: unknown


title: EXR-MBITZ1CTOT1SAMPB6A7-BS: CTOT04_01_Urine_6-7

value: nephrotic syndrome

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A3-BS: CTOT04_01_Urine_6-3

value: Transplanted kidney present

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A2-BS: CTOT04_01_Urine_6-2

value: urine

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB6A1-BS: CTOT04_01_Urine_6-1

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 86: CK71

value: blood

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB6A4-BS: CTOT04_01_Urine_6-4

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 897

value: Placenta

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

value: 1 (1 child)

value: 0 (never smoked)

tag: gestational diabetes


title: Placental tissue ID 891

tag: parity

tag: gestational hypertension


title: Placental tissue ID 888

value: 2 (smoked during pregnancy)


title: EXR-MBITZ1CTOT1SAMPB6A5-BS: CTOT04_01_Urine_6-5

tag: diagnosis

tag: condition

tag: anatomical location

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 887

tag: labeling date

tag: birth weight (gram)

tag: Sex

tag: maternal age (year)


title: EXR-MBITZ1CTOT1SAMPB5A24-BS: CTOT04_01_Urine_5-24

value: nephrotic syndrome

tag: tissue

value: Transplanted kidney present

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 91: CK29

tag: gender

value: unknown

tag: age


title: Chinese horse breeds_Series 85: CK70


title: EXR-MBITZ1CTOT1SAMPB5A22-BS: CTOT04_01_Urine_5-22

value: urine

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A23-BS: CTOT04_01_Urine_5-23

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 88: CK55

value: blood

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB6A6-BS: CTOT04_01_Urine_6-6

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 883

value: Placenta

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male

tag: gestational age (month)

value: 0 (European)

value: 2 (2 children)

tag: maternal smoking

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 84: CK66


title: EXR-MBITZ1CTOT1SAMPB5A20-BS: CTOT04_01_Urine_5-20

tag: diagnosis

tag: condition

value: Urinary system structure

value: total cell-free biofluid RNA

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A21-BS: CTOT04_01_Urine_5-21

value: nephrotic syndrome

value: Transplanted kidney present

tag: anatomical location

tag: rna source

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 874

tag: labeling date

tag: ethnicity

tag: parity

value: 3 (3 children)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 83: CK47

tag: gender

value: unknown

tag: tissue


title: EXR-MBITZ1CTOT1SAMPB5A19-BS: CTOT04_01_Urine_5-19

value: urine

tag: 3' adapter sequence

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A18-BS: CTOT04_01_Urine_5-18

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 873

value: Placenta

tag: hybridization date

tag: date delivery

tag: birth weight (gram)

tag: Sex

value: Female

tag: maternal age (year)

value: 2 (smoked during pregnancy)

value: 1 (yes)


title: Placental tissue ID 871

tag: maternal pre-pregnancy bmi

value: Male

tag: gestational age (month)

value: 0 (European)

value: 1 (1 child)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB5A16-BS: CTOT04_01_Urine_5-16

tag: diagnosis

tag: condition

tag: anatomical location

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

value: TTACATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A17-BS: CTOT04_01_Urine_5-17

value: nephrotic syndrome

value: Transplanted kidney present

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 82: CK28

value: unknown

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB5A15-BS: CTOT04_01_Urine_5-15

value: urine

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 875

value: Placenta

tag: labeling date

value: Female

tag: ethnicity

tag: parity

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 81: CK22

tag: gender

tag: tissue


title: EXR-MBITZ1CTOT1SAMPB5A13-BS: CTOT04_01_Urine_5-13

tag: 3' adapter sequence

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 80: CK21


title: EXR-MBITZ1CTOT1SAMPB5A12-BS: CTOT04_01_Urine_5-12

value: TAATATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A10-BS: CTOT04_01_Urine_5-10

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A11-BS: CTOT04_01_Urine_5-11

value: Urinary system structure

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 866

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: 0 (European)

value: 1 (1 child)

tag: maternal age (year)


title: Chinese horse breeds_Series 78: CK15


title: Placental tissue ID 865

value: Male

tag: gestational age (month)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Placental tissue ID 868

tag: labeling date

value: 1 (stopped smoking before pregnancy)


title: EXR-MBITZ1CTOT1SAMPB5A9-BS: CTOT04_01_Urine_5-9

tag: diagnosis

value: nephrotic syndrome

tag: condition

value: Transplanted kidney present

tag: anatomical location

tag: rna source

value: total cell-free biofluid RNA

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A8-BS: CTOT04_01_Urine_5-8

value: urine

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A7-BS: CTOT04_01_Urine_5-7

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 864

value: Placenta

value: Female

tag: ethnicity

tag: parity

value: 2 (2 children)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 77: CK13

tag: gender

value: unknown

tag: tissue

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB5A5-BS: CTOT04_01_Urine_5-5

value: Urinary system structure

tag: 3' adapter sequence

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A4-BS: CTOT04_01_Urine_5-4

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 76: CK11


title: Placental tissue ID 890

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: 0 (European)

value: 1 (1 child)

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)


title: Placental tissue ID 862

tag: labeling date

value: Male

tag: gestational age (month)

value: 3 (3 children)

tag: maternal smoking

value: 2 (smoked during pregnancy)

tag: gestational weight gain (kilogram)


title: Placental tissue ID 860

tag: ethnicity

tag: parity


title: Chinese horse breeds_Series 75: CK10


title: EXR-MBITZ1CTOT1SAMPB5A14-BS: CTOT04_01_Urine_5-14

tag: diagnosis

value: nephrotic syndrome

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

tag: rna source

value: total cell-free biofluid RNA

value: TATCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A3-BS: CTOT04_01_Urine_5-3

tag: tissue

tag: 3' adapter sequence

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A2-BS: CTOT04_01_Urine_5-2

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 79: CK16

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: Placental tissue ID 854

value: Placenta

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 855

tag: labeling date

tag: Sex

tag: gestational age (month)

value: 0 (European)

tag: maternal age (year)

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB4A24-BS: CTOT04_01_Urine_4-24

tag: diagnosis

tag: condition

tag: anatomical location

value: Urinary system structure

tag: rna source

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB5A1-BS: CTOT04_01_Urine_5-1

tag: tissue

tag: 3' adapter sequence

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 74: CK9

tag: gender

tag: age


title: EXR-MBITZ1CTOT1SAMPB4A23-BS: CTOT04_01_Urine_4-23

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 849

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

value: Female

tag: ethnicity

tag: parity

value: 2 (2 children)

value: 1 (yes)


title: Chinese horse breeds_Series 73: CK7


title: EXR-MBITZ1CTOT1SAMPB4A21-BS: CTOT04_01_Urine_4-21

value: nephrotic syndrome

value: urine

value: Transplanted kidney present

value: total cell-free biofluid RNA

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 72: CK5

value: unknown

value: blood


title: EXR-MBITZ1CTOT1SAMPB4A22-BS: CTOT04_01_Urine_4-22

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB3A21-BS: CTOT04_01_Urine_3-21


title: EXR-MBITZ1CTOT1SAMPB5A6-BS: CTOT04_01_Urine_5-6

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB3A20-BS: CTOT04_01_Urine_3-20

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 845

value: Placenta

tag: labeling date

tag: Sex

tag: gestational age (month)

value: 0 (European)

tag: maternal age (year)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 71: CK4

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB3A19-BS: CTOT04_01_Urine_3-19

tag: diagnosis

tag: condition

tag: anatomical location

value: Urinary system structure

tag: rna source

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 837

tag: tissue

value: Male

value: 1 (1 child)

tag: maternal smoking

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB3A18-BS: CTOT04_01_Urine_3-18

value: nephrotic syndrome

value: urine

value: Transplanted kidney present

tag: 3' adapter sequence

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 70: CK2

tag: gender

value: unknown

value: blood

tag: age


title: Chinese horse breeds_Series 69: M829

source_name: Mongolian horse


title: EXR-MBITZ1CTOT1SAMPB3A15-BS: CTOT04_01_Urine_3-15

value: total cell-free biofluid RNA

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB3A17-BS: CTOT04_01_Urine_3-17

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 781

value: Placenta

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: ethnicity

value: 0 (European)

tag: parity

value: 2 (2 children)


title: EXR-MBITZ1CTOT1SAMPB3A16-BS: CTOT04_01_Urine_3-16

value: Urinary system structure

value: TTACATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB3A13-BS: CTOT04_01_Urine_3-13

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB3A12-BS: CTOT04_01_Urine_3-12

value: TAATATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 67: M032

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB3A11-BS: CTOT04_01_Urine_3-11

value: nephrotic syndrome

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 68: M805


title: EXR-MBITZ1CTOT1SAMPB3A14-BS: CTOT04_01_Urine_3-14

value: urine

value: Transplanted kidney present

value: TATCATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 780

tag: labeling date

tag: Sex

value: Female

tag: gestational age (month)

value: 1 (1 child)

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 66: M022

value: unknown

tag: tissue

value: blood


title: EXR-MBITZ1CTOT1SAMPB3A10-BS: CTOT04_01_Urine_3-10

tag: diagnosis

tag: condition

tag: anatomical location

tag: rna source

value: total cell-free biofluid RNA

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB3A8-BS: CTOT04_01_Urine_3-8

value: Urinary system structure

tag: 3' adapter sequence

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 65: M007

tag: gender

tag: age


title: EXR-MBITZ1CTOT1SAMPB3A9-BS: CTOT04_01_Urine_3-9

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB3A7-BS: CTOT04_01_Urine_3-7

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 64: M110

value: 3 years


title: Placental tissue ID 798

value: Placenta

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

value: Male

value: 0 (European)

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: Placental tissue ID 778

tag: labeling date

tag: Sex

tag: gestational age (month)

tag: ethnicity

value: 1 (non-European)

tag: parity

value: 4 (4 children)

tag: maternal age (year)


title: EXR-MBITZ1CTOT1SAMPB3A5-BS: CTOT04_01_Urine_3-5

tag: diagnosis

value: nephrotic syndrome

tag: tissue

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 770

value: 1 (1 child)

value: 1 (stopped smoking before pregnancy)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 774

tag: hybridization date

tag: date delivery

value: 2 (2 children)


title: EXR-MBITZ1CTOT1SAMPB3A4-BS: CTOT04_01_Urine_3-4

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB3A3-BS: CTOT04_01_Urine_3-3

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 63: M104

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: Placental tissue ID 760

value: Placenta

tag: labeling date

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: Male

value: 0 (European)

tag: maternal smoking

value: 0 (never smoked)

tag: gestational weight gain (kilogram)


title: Placental tissue ID 766

tag: tissue

value: Female

tag: gestational age (month)

tag: ethnicity

tag: parity

tag: maternal age (year)


title: EXR-MBITZ1CTOT1SAMPB3A1-BS: CTOT04_01_Urine_3-1

tag: diagnosis

value: nephrotic syndrome

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 61: MC6


title: EXR-MBITZ1CTOT1SAMPB2A24-BS: CTOT04_01_Urine_2-24

tag: rna source

tag: 3' adapter sequence

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 62: M103

tag: gender

tag: age


title: EXR-MBITZ1CTOT1SAMPB2A23-BS: CTOT04_01_Urine_2-23

value: Urinary system structure

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB3A6-BS: CTOT04_01_Urine_3-6

value: total cell-free biofluid RNA

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 768

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: 1 (non-European)

value: 3 (3 children)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 59: M-C5

value: unknown

tag: tissue

value: blood

value: 3 years


title: Placental tissue ID 744

value: Placenta

tag: birth weight (gram)

tag: Sex

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

value: 1 (1 child)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB2A22-BS: CTOT04_01_Urine_2-22

tag: diagnosis

value: nephrotic syndrome

tag: condition

tag: anatomical location

tag: rna source

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 758

tag: labeling date

value: Male

tag: parity

tag: maternal age (year)

value: 0 (never smoked)


title: EXR-MBITZ1CTOT1SAMPB2A19-BS: CTOT04_01_Urine_2-19

value: urine

value: Transplanted kidney present

tag: 3' adapter sequence

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 60: M-A5

tag: gender

tag: age


title: Chinese horse breeds_Series 58: MG829

tag: tissue


title: EXR-MBITZ1CTOT1SAMPB2A17-BS: CTOT04_01_Urine_2-17

value: Urinary system structure

value: total cell-free biofluid RNA

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 57: MG805


title: Placental tissue ID 741

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB2A18-BS: CTOT04_01_Urine_2-18

tag: diagnosis

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB2A16-BS: CTOT04_01_Urine_2-16

tag: condition

value: TTACATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB2A20-BS: CTOT04_01_Urine_2-20

tag: anatomical location

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 736

tag: Sex

value: Female

tag: gestational age (month)

tag: ethnicity

value: 1 (non-European)

value: 3 (3 children)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB2A15-BS: CTOT04_01_Urine_2-15

tag: rna source

tag: 3' adapter sequence

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 56: MG340

tag: gender

value: unknown

tag: tissue

value: blood

tag: age

value: 3 years


title: Placental tissue ID 719

value: Placenta

tag: labeling date

tag: hybridization date

tag: date delivery

tag: maternal pre-pregnancy bmi

value: Male

value: 0 (European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)

value: 0 (never smoked)

value: 1 (yes)


title: Chinese horse breeds_Series 55: MG326


title: EXR-MBITZ1CTOT1SAMPB2A14-BS: CTOT04_01_Urine_2-14

tag: diagnosis

value: nephrotic syndrome

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: Urinary system structure

value: total cell-free biofluid RNA

value: TATCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB2A12-BS: CTOT04_01_Urine_2-12

value: TAATATCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 733

tag: birth weight (gram)

tag: Sex

value: Female

tag: gestational age (month)

tag: ethnicity

value: 2 (smoked during pregnancy)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB2A11-BS: CTOT04_01_Urine_2-11

tag: tissue

tag: rna source

tag: 3' adapter sequence

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 711

tag: labeling date

tag: hybridization date

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB2A10-BS: CTOT04_01_Urine_2-10

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 54: MG399

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB2A9-BS: CTOT04_01_Urine_2-9

tag: diagnosis

tag: condition

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB2A8-BS: CTOT04_01_Urine_2-8

tag: anatomical location

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 53: MG388


title: Placental tissue ID 709

value: Placenta

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: 0 (European)

tag: parity

value: 1 (1 child)

tag: maternal age (year)


title: EXR-MBITZ1CTOT1SAMPB2A7-BS: CTOT04_01_Urine_2-7

value: nephrotic syndrome

tag: tissue

value: urine

value: Transplanted kidney present

tag: rna source

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB2A6-BS: CTOT04_01_Urine_2-6

value: Urinary system structure

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 700

tag: labeling date

tag: hybridization date

value: Female

tag: gestational age (month)

tag: ethnicity

value: 3 (3 children)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Chinese horse breeds_Series 52: MG711

tag: gender

value: unknown

value: blood

tag: age


title: Chinese horse breeds_Series 51: MG314

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB2A3-BS: CTOT04_01_Urine_2-3

tag: diagnosis

tag: condition

tag: anatomical location

value: TCCACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB2A4-BS: CTOT04_01_Urine_2-4

value: TCCGTTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB2A2-BS: CTOT04_01_Urine_2-2

value: TCATCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB2A5-BS: CTOT04_01_Urine_2-5

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB2A13-BS: CTOT04_01_Urine_2-13

value: nephrotic syndrome

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 697

value: Placenta

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: 0 (European)

value: 1 (1 child)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: Chinese horse breeds_Series 50: MG36

tag: tissue


title: EXR-MBITZ1CTOT1SAMPB2A1-BS: CTOT04_01_Urine_2-1

value: urine

value: Transplanted kidney present

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCACTTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 49: MG30

value: unknown


title: Placental tissue ID 691

tag: labeling date

tag: hybridization date

value: Male

tag: gestational age (month)

tag: ethnicity

tag: parity

tag: maternal age (year)

value: 0 (never smoked)

value: 1 (yes)


title: Placental tissue ID 687

value: 2 (2 children)

value: 2 (smoked during pregnancy)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 680

tag: date delivery

value: Female


title: EXR-MBITZ1CTOT1SAMPB1A23-BS: CTOT04_01_Urine_1-23

tag: diagnosis

value: nephrotic syndrome

tag: condition

tag: anatomical location

value: TGTTATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 48: MG27

tag: gender

value: blood

tag: age

value: 3 years


title: Placental tissue ID 679

tag: tissue

value: Placenta

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

value: 0 (European)

value: 1 (1 child)

tag: maternal smoking

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB1A21-BS: CTOT04_01_Urine_1-21

value: urine

value: Transplanted kidney present

value: Urinary system structure

tag: rna source

tag: 3' adapter sequence

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A22-BS: CTOT04_01_Urine_1-22

value: total cell-free biofluid RNA

value: TTGTATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A20-BS: CTOT04_01_Urine_1-20

value: TTCATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A19-BS: CTOT04_01_Urine_1-19

value: TTATTTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 678

tag: labeling date

tag: hybridization date

value: Male

tag: gestational age (month)

tag: ethnicity

tag: parity

tag: maternal age (year)

value: 1 (stopped smoking before pregnancy)


title: Chinese horse breeds_Series 47: MG10

value: unknown


title: EXR-MBITZ1CTOT1SAMPB1A17-BS: CTOT04_01_Urine_1-17

tag: diagnosis

value: nephrotic syndrome

tag: condition

tag: anatomical location

value: TACTCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 669

tag: tissue

tag: date delivery

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: Placental tissue ID 663

value: Placenta

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

tag: Sex

tag: maternal smoking


title: Chinese horse breeds_Series 45: M17

source_name: Kazakh horse

tag: gender

value: blood

tag: age

value: 3 years


title: EXR-MBITZ1CTOT1SAMPB1A24-BS: CTOT04_01_Urine_1-24

value: urine

tag: rna source

tag: 3' adapter sequence

value: TGCCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A15-BS: CTOT04_01_Urine_1-15

value: Transplanted kidney present

value: Urinary system structure

value: TGATGTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A16-BS: CTOT04_01_Urine_1-16

value: total cell-free biofluid RNA

value: TTACATCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 44: M15


title: EXR-MBITZ1CTOT1SAMPB2A21-BS: CTOT04_01_Urine_2-21

value: TTGACTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A14-BS: CTOT04_01_Urine_1-14

value: TATCATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A11-BS: CTOT04_01_Urine_1-11

value: TAACGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 43: M14

value: unknown


title: Chinese horse breeds_Series 42: M13


title: EXR-MBITZ1CTOT1SAMPB1A12-BS: CTOT04_01_Urine_1-12

value: nephrotic syndrome

value: TAATATCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A10-BS: CTOT04_01_Urine_1-10

value: TTAAGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 658

value: Placenta

tag: labeling date

tag: hybridization date

value: Female

tag: gestational age (month)

tag: ethnicity

value: 0 (European)

tag: parity

value: 2 (2 children)

value: 1 (stopped smoking before pregnancy)

tag: gestational weight gain (kilogram)


title: EXR-MBITZ1CTOT1SAMPB1A8-BS: CTOT04_01_Urine_1-8

tag: diagnosis

tag: tissue

value: urine

tag: condition

value: Transplanted kidney present

tag: anatomical location

value: TCTAGTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 657

tag: date delivery

tag: maternal pre-pregnancy bmi

tag: birth weight (gram)

value: Male

value: 1 (1 child)

tag: maternal age (year)

value: 0 (never smoked)

tag: gestational diabetes

tag: gestational hypertension


title: EXR-MBITZ1CTOT1SAMPB1A9-BS: CTOT04_01_Urine_1-9

value: Urinary system structure

tag: rna source

value: total cell-free biofluid RNA

tag: 3' adapter sequence

value: TCTCCTCGTATGCCGTCTTCTGCTTG


title: Placental tissue ID 656

tag: labeling date

tag: hybridization date

tag: Sex

value: 1 (non-European)

tag: maternal smoking


title: Chinese horse breeds_Series 46: M18

tag: gender

value: unknown

value: blood

tag: age

value: 3 years


title: Chinese horse breeds_Series 41: M12

tag: tissue


title: EXR-MBITZ1CTOT1SAMPB1A18-BS: CTOT04_01_Urine_1-18

tag: diagnosis

value: nephrotic syndrome

tag: condition

value: TAGCCTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A7-BS: CTOT04_01_Urine_1-7

tag: anatomical location

value: TCGCGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 40: M11


title: EXR-MBITZ1CTOT1SAMPB1A13-BS: CTOT04_01_Urine_1-13

value: TAGAGTCGTATGCCGTCTTCTGCTTG


title: Chinese horse breeds_Series 39: M10


title: EXR-MBITZ1CTOT1SAMPB1A6-BS: CTOT04_01_Urine_1-6

value: urine

value: TCGATTCGTATGCCGTCTTCTGCTTG


title: EXR-MBITZ1CTOT1SAMPB1A5-BS: CTOT04_01_Urine_1-5

value: Transplanted kidney present

value: TCCTATCGTATGCCGTCTTCTGCTTG


title: HT1080-IFNg-2

first: Weimin

last: Wang

state: Michigan

address: 109 Zina Pitcher Place

department: Surgery

description: processed data file: mRNA_in_HT_Ctrl_vs_IFNg-RPKM.txt

data_processing:
Data was analyzed by the University of Michigan Bioinformatics Core. The quality of the raw reads data for each sample was first evaluated using FastQC (version 0.11.3).
The Tuxedo Suite software package was used for alignment, differential expression analysis, and post-analysis diagnostics. Briefly, reads were aligned to the reference transcriptome (hg19) using TopHat (version 2.0.13) and a second round of quality control was performed after alignment. Cufflinks/CuffDiff (version 2.2.1) was used for expression quantitation, normalization, and differential expression analysis. Locally developed scripts were used to format and annotate the differential expression data output from CuffDiff. Diagnostic plots were generated using the CummeRbund R package.
Different conditions were compared using ballgown R package.
Genome_build: hg19 (GRCh37)
Supplementary_files_format_and_content: mRNA_in_HT_Ctrl_vs_IFNg-RPKM.txt: Tab-delimited text file includes RPKM values for each Sample.

source_name: HT-1080 cells

growth_protocol: HT-1080 cells were cultured routinely in EMEM (ATCC) medium.

extract_protocol:
Total RNA was isolated from cells by column purification (Direct-zol RNA Miniprep Kit, Zymo Research) with DNase treatment.
The Ribo-Zero Gold rRNA Removal Kit (Illumina) and TruSeq® Stranded Total RNA Library Prep Globin kit (Illumina) were used to prepare the library for RNA-sequencing. Sequencing was performed by the University of Michigan DNA Sequencing Core, using the Illumina Hi-Seq 4000 platform, paired end, 50 cycles.

treatment_protocol: Recombinant IFNg 10 ng/ml treated for 8h.

tag: cell line

tag: cell type

value: fibrosarcoma cell line from ATCC

tag: genotype/variation

value: WT

tag: treatment

value: IFNg


title: Chinese horse breeds_Series 38: M9-4


title: LT_FB_L_R2

city: Szeged

first: Laszlo

middle: G.

last: Nagy

state: Csongrad

address: Temesvari krt 62

department: Institute of Biochemistry, Synthetic and Systems Biology Unit

country: Hungary

institute: Biological Research Centre, Hungarian Academy of Sciences

data_processing:
Reads were quality trimmed using CLC Genomics Workbench Tool (v 9.5.2). Ambiguous base limit=0, Error probability cutoff value=0.05.
Reads were mapped using RNA-Seq analysis package v 2.1 of CLC Genomics Workbench Tool (v.9.5.2) allowing intergenic mapping.  Parameters: min. read length fraction = 0.8, min. read similarity fraction = 0.8.  mismatch cost = 2, insertion cost = 3, deletion cost = 3, Strand specific = both, Maximum number of hits for a read=30, Count paired reads as two=no, Expression value= Total counts.
Genes were filtered based on their expression levels in R (v. 3.0.2) keeping only those features that were detected by at least 5 mapped reads in at least 25% of the samples included in the study.
Trimmed mean of M values (TMM) scale normalization was used. Function: calcNormFactors, Package: edgeR, Version 3.4.2
Voom log2 transformation together with quantile normalization was applied. Function: voom normalize=quantile, Package: limma, Version: 3.18.13
Linear modeling with empirical Bayes moderation was built in limma. Package: limma, Version: 3.18.13
Genome_build: Lentinus tigrinus ALCF2SS1-6 v1.0 (Lenti6_1) JGI project ID: 1020066
Supplementary_files_format_and_content: Comma separated files containing RNA-Seq count data, exported from CLC Genomics Workbench Tool

molecule: polyA RNA

organism: Lentinus tigrinus

source_name: fruiting body, lamellae

growth_protocol: Vegetative mycelia of Lentinus tigrinus RLP-9953-sp were maintained on MEA (20 g malt extract, 0.5 g yeast extract, 15 g agar for 1L). For fruiting a mycelial plug was placed (5 mm diameter) on modified sawdust-rice bran medium (1 part wheat bran and 2 parts aspen sawdust wetted to 65% moisture for 100 ml in a 250 ml beaker). The culture was incubated for 21 days at 30 °C in the dark, then placed in a moist growth chamber at 25 °C in a 12/12 hour light/dark cycle. Vegetative mycelia, stage 1 primordia, stage 2 primordia cap and stipe, young fruiting body cap and stipe and fruiting body cap and stipe tissues were harvested for RNA-Seq. Stage 1 primordium was defined as a 5-20 mm tall white stalk-structure without any differentiation of a cap initial, stage 2 primordium was defined as a 15 – 25 mm tall stalk-like structure with a brown apical pigmentation (cap initial), young fruiting body had and up to 5 mm wide brown cap initial with just barely visible gills on the bottom, growing on a 30-40 mm tall stipe, fruiting body was 50-70 mm tall, with fully flattened (but not funnel-shaped) cap.

extract_protocol:
After harvesting, samples were immediately placed on liquid nitrogen and stored at -80 °C until use.  50-75 mg frozen tissue was placed in a pre-chilled mortar and ground to a fine powder. RNeasy Midi Kit (QIAGEN) was used for RNA extraction according to manufacturer«s instructions.
Whole transcriptome sequencing was performed using the TrueSeq RNA Library Preparation Kit v2 (Illumina) according to the manufacturer’s instructions. Briefly, RNA quality and quantity measurements were performed using RNA ScreenTape and Reagents on TapeStation (all from Agilent) and Qubit (ThermoFisher); only high quality (RIN >8.0) total RNA samples were processed. Next, RNA was DNaseI (ThermoFisher) treated and the mRNA was purified and fragmented. First strand cDNA synthesis was performed using SuperScript II (ThermoFisher) followed by second strand cDNA synthesis, end repair, 3’-end adenylation, adapter ligation and PCR amplification. All of the purification steps were performed using AmPureXP Beads (Backman Coulter). Final libraries were quality checked using D1000 ScreenTape and Reagents on TapeStation (all from Agilent). Concentration of each library was determined using either the QPCR Quantification Kit for Illumina (Agilent) or the KAPA Library Quantification Kit for Illumina (KAPA Biosystems)

tag: strain

tag: group

value: fruiting body, lamellae