title: ChIP-seq from GM12878 (ENCLB361PIO)

description:
https://www.encodeproject.org/experiments/ENCSR793HVL/
***************
biological replicate number: 2
technical replicate number: 1
description: E2F8 ChIP-seq on human GM12878
experiment encode accession: ENCSR793HVL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB361PIO
size range: 450-650

value: adult

value: ENCBS339VHO at ENCODE; https://www.encodeproject.org/ENCBS339VHO/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from esophagus muscularis mucosa (ENCLB072BNC)

status: Public on Mar 02 2019

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR217KAL/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on muscle layer of esophagus
experiment encode accession: ENCSR217KAL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR373YFT
encode release date: 2018-03-06
lab: Richard Myers, HAIB
library encode accession: ENCLB072BNC

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)

tag: antibody

value: esophagus muscularis mucosa

value: tissue

tag: biosample encode accession

tag: Sex

value: male

tag: lab

value: Richard Myers, HAIB

tag: age

value: 37 year

tag: dev stage

tag: link

value: ENCBS243YQD at ENCODE; https://www.encodeproject.org/ENCBS243YQD/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HepG2 (ENCLB916SKC)

description:
https://www.encodeproject.org/experiments/ENCSR195ZCD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human HepG2
experiment encode accession: ENCSR195ZCD
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB916SKC
size range: 450-650

source_name: Homo sapiens HepG2 immortalized cell line

value: Control

tag: line

value: cell line

tag: description

value: Hepatocellular carcinoma

value: child

value: 15 year

value: Michael Snyder, Stanford

tag: health state

value: hepatocellular carcinoma

value: ENCBS777STD at ENCODE; https://www.encodeproject.org/ENCBS777STD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from thoracic aorta (ENCLB067UYE)

description:
https://www.encodeproject.org/experiments/ENCSR211SZD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human thoracic aorta
experiment encode accession: ENCSR211SZD
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-11-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB067UYE
size range: 450-650

source_name: Homo sapiens male adult (54 years) thoracic aorta tissue

value: thoracic aorta

value: tissue

value: adult

value: 54 year

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: ENCBS532TUO at ENCODE; https://www.encodeproject.org/ENCBS532TUO/


title: ChIP-seq from upper lobe of left lung (ENCLB169FEN)

description:
https://www.encodeproject.org/experiments/ENCSR762NXP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Mon Sep 26 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR762NXP
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB169FEN

source_name: Homo sapiens upper lobe of left lung tissue female adult (53 years)

value: Control

value: upper lobe of left lung

value: female

value: Richard Myers, HAIB

value: 53 year

value: ENCBS226JGR at ENCODE; https://www.encodeproject.org/ENCBS226JGR/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/44e530bc-7fde-47cd-bf10-ba0046f1664e/@@download/attachment/83373.svs


title: ChIP-seq from K562 (ENCLB727OEK)

description:
https://www.encodeproject.org/experiments/ENCSR219BXP/
***************
biological replicate number: 3
technical replicate number: 1
description: DPF2 ChIP-seq on human K562
experiment encode accession: ENCSR219BXP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2017-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB727OEK

source_name: Homo sapiens K562 immortalized cell line

value: cell line

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS596DHR at ENCODE; https://www.encodeproject.org/ENCBS596DHR/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HepG2 (ENCLB287DCA)

description:
https://www.encodeproject.org/experiments/ENCSR195ZCD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human HepG2
experiment encode accession: ENCSR195ZCD
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB287DCA
size range: 450-650

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS225ERF at ENCODE; https://www.encodeproject.org/ENCBS225ERF/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from MCF-7 (ENCLB099ALY)

description:
https://www.encodeproject.org/experiments/ENCSR759EUL/
***************
biological replicate number: 5
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human MCF-7 (fragmentation date 04-08-13)
experiment encode accession: ENCSR759EUL
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-01-08
lab: Richard Myers, HAIB
library encode accession: ENCLB099ALY
size range: 100-500

source_name: Homo sapiens MCF-7 cell line

value: Control

value: MCF-7, mammary gland adenocarcinoma

value: female

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: Richard Myers, HAIB

tag: passage number

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCBS496HCC at ENCODE; https://www.encodeproject.org/ENCBS496HCC/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; https://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from HepG2 (ENCLB140YCX)

description:
https://www.encodeproject.org/experiments/ENCSR191TLD/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR191TLD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-20
lab: Richard Myers, HAIB
library encode accession: ENCLB140YCX

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-PHF5A

value: cell line

value: child

value: ENCBS386FEG at ENCODE; https://www.encodeproject.org/ENCBS386FEG/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB114SJX)

description:
https://www.encodeproject.org/experiments/ENCSR195QFV/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR195QFV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000FCA
encode release date: 2018-02-20
lab: Richard Myers, HAIB
library encode accession: ENCLB114SJX

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-ZNF3

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS405DQO at ENCODE; https://www.encodeproject.org/ENCBS405DQO/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from HEK293 (ENCLB573VFW)

description:
https://www.encodeproject.org/experiments/ENCSR194BBY/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF221 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR194BBY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB573VFW
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF221 originated from HEK293

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF221 under the control of a CMV promoter.

value: female

value: unknown

value: embryonic

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS610GCE at ENCODE; https://www.encodeproject.org/ENCBS610GCE/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from HEK293 (ENCLB430PEH)

description:
https://www.encodeproject.org/experiments/ENCSR754SOI/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF529 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR754SOI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB430PEH
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF529 originated from HEK293

value: cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF529 under the control of a CMV promoter.

value: ENCBS691ZPO at ENCODE; https://www.encodeproject.org/ENCBS691ZPO/


title: ChIP-seq from HEK293 (ENCLB559KVN)

description:
https://www.encodeproject.org/experiments/ENCSR754SOI/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF529 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR754SOI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB559KVN
size range: 450-650

value: ENCBS350UGC at ENCODE; https://www.encodeproject.org/ENCBS350UGC/


title: ChIP-seq from gastroesophageal sphincter (ENCLB039HTE)

description:
https://www.encodeproject.org/experiments/ENCSR206ETG/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human esophagogastric junction
experiment encode accession: ENCSR206ETG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR361LSG
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB039HTE
size range: 450-650

source_name: Homo sapiens female adult (53 years) gastroesophageal sphincter tissue

value: CTCF

value: gastroesophageal sphincter

value: tissue

value: adult

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: ENCBS185KVE at ENCODE; https://www.encodeproject.org/ENCBS185KVE/


title: ChIP-seq from HEK293 (ENCLB209XVL)

description:
https://www.encodeproject.org/experiments/ENCSR194BBY/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF221 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR194BBY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB209XVL
size range: 450-650

value: female

value: ENCBS236UKC at ENCODE; https://www.encodeproject.org/ENCBS236UKC/


title: ChIP-seq from K562 (ENCLB155JFV)

description:
https://www.encodeproject.org/experiments/ENCSR189VXS/
***************
biological replicate number: 2
technical replicate number: 1
description: GTF2F1 ChIP-seq on human K562
experiment encode accession: ENCSR189VXS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2018-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB155JFV
size range: 450-650

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS187ZIN at ENCODE; https://www.encodeproject.org/ENCBS187ZIN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB195YWR)

description:
https://www.encodeproject.org/experiments/ENCSR189VXS/
***************
biological replicate number: 1
technical replicate number: 1
description: GTF2F1 ChIP-seq on human K562
experiment encode accession: ENCSR189VXS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2018-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB195YWR
size range: 450-650

value: Michael Snyder, Stanford

value: ENCBS727RLP at ENCODE; https://www.encodeproject.org/ENCBS727RLP/


title: ChIP-seq from HepG2 (ENCLB637FEC)

description:
https://www.encodeproject.org/experiments/ENCSR754MUD/
***************
biological replicate number: 3
technical replicate number: 1
description: SKI ChIP-seq on human HepG2
experiment encode accession: ENCSR754MUD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB637FEC
size range: 450-650

value: SKI

value: cell line

value: Hepatocellular carcinoma

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS777STD at ENCODE; https://www.encodeproject.org/ENCBS777STD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB176NBL)

description:
https://www.encodeproject.org/experiments/ENCSR754MUD/
***************
biological replicate number: 2
technical replicate number: 1
description: SKI ChIP-seq on human HepG2
experiment encode accession: ENCSR754MUD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB176NBL
size range: 450-650

value: ENCBS560TQP at ENCODE; https://www.encodeproject.org/ENCBS560TQP/


title: ChIP-seq from HEK293 (ENCLB705TLG)

description:
https://www.encodeproject.org/experiments/ENCSR738SLS/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF449 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR738SLS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB705TLG
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF449 originated from HEK293

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF449 under the control of a CMV promoter.

value: female

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS794TQR at ENCODE; https://www.encodeproject.org/ENCBS794TQR/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from HEK293 (ENCLB303TRY)

description:
https://www.encodeproject.org/experiments/ENCSR738SLS/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF449 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR738SLS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB303TRY
size range: 450-650

value: cell line

value: Michael Snyder, Stanford

value: ENCBS266KBJ at ENCODE; https://www.encodeproject.org/ENCBS266KBJ/


title: ChIP-seq from HepG2 (ENCLB290ABM)

description:
https://www.encodeproject.org/experiments/ENCSR752NDX/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF282 ChIP-seq on human HepG2
experiment encode accession: ENCSR752NDX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB290ABM
size range: 450-650

value: male

value: 15 year

value: child

value: ENCBS577XCP at ENCODE; https://www.encodeproject.org/ENCBS577XCP/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB209MLR)

description:
https://www.encodeproject.org/experiments/ENCSR752NDX/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF282 ChIP-seq on human HepG2
experiment encode accession: ENCSR752NDX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB209MLR
size range: 450-650

value: hepatocellular carcinoma

value: ENCBS667BFL at ENCODE; https://www.encodeproject.org/ENCBS667BFL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from K562 (ENCLB035POL)

description:
https://www.encodeproject.org/experiments/ENCSR175EOM/
***************
biological replicate number: 1
technical replicate number: 1
description: EHMT2 ChIP-seq on human K562
experiment encode accession: ENCSR175EOM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-02-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB035POL
size range: 450-650

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS185MQS at ENCODE; https://www.encodeproject.org/ENCBS185MQS/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB311VSR)

description:
https://www.encodeproject.org/experiments/ENCSR742TMU/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF282 ChIP-seq on human K562
experiment encode accession: ENCSR742TMU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB311VSR
size range: 450-650

source_name: Homo sapiens K562 cell line

value: cell line

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS617TOY at ENCODE; https://www.encodeproject.org/ENCBS617TOY/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB365BOC)

description:
https://www.encodeproject.org/experiments/ENCSR742TMU/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF282 ChIP-seq on human K562
experiment encode accession: ENCSR742TMU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB365BOC
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: Michael Snyder, Stanford

value: ENCBS048GNZ at ENCODE; https://www.encodeproject.org/ENCBS048GNZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB052OCB)

description:
https://www.encodeproject.org/experiments/ENCSR177XCS/
***************
biological replicate number: 2
technical replicate number: 1
description: BRD9 ChIP-seq on human K562
experiment encode accession: ENCSR177XCS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB052OCB
size range: 450-650

value: ENCBS831ATS at ENCODE; https://www.encodeproject.org/ENCBS831ATS/


title: ChIP-seq from K562 (ENCLB911RON)

description:
https://www.encodeproject.org/experiments/ENCSR175EOM/
***************
biological replicate number: 2
technical replicate number: 1
description: EHMT2 ChIP-seq on human K562
experiment encode accession: ENCSR175EOM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-02-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB911RON
size range: 450-650

value: ENCBS352MRW at ENCODE; https://www.encodeproject.org/ENCBS352MRW/


title: ChIP-seq from K562 (ENCLB268BCD)

description:
https://www.encodeproject.org/experiments/ENCSR177XCS/
***************
biological replicate number: 1
technical replicate number: 1
description: BRD9 ChIP-seq on human K562
experiment encode accession: ENCSR177XCS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB268BCD
size range: 450-650

value: female

value: ENCBS603CUX at ENCODE; https://www.encodeproject.org/ENCBS603CUX/


title: ChIP-seq from liver (ENCLB018ARK)

description:
https://www.encodeproject.org/experiments/ENCSR736BUG/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on EGR1-human
experiment encode accession: ENCSR736BUG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR931XLP, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB018ARK

source_name: Homo sapiens liver tissue male adult (32 years)

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from liver (ENCLB782FHM)

description:
https://www.encodeproject.org/experiments/ENCSR736BUG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on EGR1-human
experiment encode accession: ENCSR736BUG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR931XLP, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB782FHM

value: adult


title: ChIP-seq from HepG2 (ENCLB677SUZ)

description:
https://www.encodeproject.org/experiments/ENCSR174GOO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR174GOO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-10-30
lab: Richard Myers, HAIB
library encode accession: ENCLB677SUZ

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-HMGXB4

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS921SNO at ENCODE; https://www.encodeproject.org/ENCBS921SNO/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HepG2 (ENCLB750TEF)

description:
https://www.encodeproject.org/experiments/ENCSR174GOO/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR174GOO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-10-30
lab: Richard Myers, HAIB
library encode accession: ENCLB750TEF

value: ENCBS264OGO at ENCODE; https://www.encodeproject.org/ENCBS264OGO/


title: ChIP-seq from K562 (ENCLB642OCU)

description:
https://www.encodeproject.org/experiments/ENCSR731LHZ/
***************
biological replicate number: 1
technical replicate number: 1
description: E4F1 ChIP-seq on human K562
experiment encode accession: ENCSR731LHZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB642OCU
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS839CNN at ENCODE; https://www.encodeproject.org/ENCBS839CNN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HepG2 (ENCLB904XDI)

description:
https://www.encodeproject.org/experiments/ENCSR170DNV/
***************
biological replicate number: 2
technical replicate number: 1
description: PHB2 ChIP-seq on human HepG2
experiment encode accession: ENCSR170DNV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB904XDI
size range: 450-650

value: cell line

value: male

value: hepatocellular carcinoma

value: ENCBS787RAZ at ENCODE; https://www.encodeproject.org/ENCBS787RAZ/


title: ChIP-seq from K562 (ENCLB902ALU)

description:
https://www.encodeproject.org/experiments/ENCSR731LHZ/
***************
biological replicate number: 2
technical replicate number: 1
description: E4F1 ChIP-seq on human K562
experiment encode accession: ENCSR731LHZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB902ALU
size range: 450-650

value: adult

value: ENCBS118YJZ at ENCODE; https://www.encodeproject.org/ENCBS118YJZ/


title: ChIP-seq from sigmoid colon (ENCLB458OCK)

description:
https://www.encodeproject.org/experiments/ENCSR168DXB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human sigmoid colon
experiment encode accession: ENCSR168DXB
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB458OCK
size range: 450-650

source_name: Homo sapiens sigmoid colon tissue female adult (51 year)

value: Control

value: sigmoid colon

value: tissue

value: 51 year

value: ENCBS214RWK at ENCODE; https://www.encodeproject.org/ENCBS214RWK/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from K562 (ENCLB430LRT)

description:
https://www.encodeproject.org/experiments/ENCSR718SDE/
***************
biological replicate number: 3
technical replicate number: 1
description: RLF ChIP-seq on human K562
experiment encode accession: ENCSR718SDE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB430LRT
size range: 450-650

value: RLF

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS734NZL at ENCODE; https://www.encodeproject.org/ENCBS734NZL/


title: ChIP-seq from HepG2 (ENCLB634WSR)

description:
https://www.encodeproject.org/experiments/ENCSR170DNV/
***************
biological replicate number: 1
technical replicate number: 1
description: PHB2 ChIP-seq on human HepG2
experiment encode accession: ENCSR170DNV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB634WSR
size range: 450-650

value: cell line

value: child

value: male

value: 15 year

value: ENCBS157PJQ at ENCODE; https://www.encodeproject.org/ENCBS157PJQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from K562 (ENCLB278GNJ)

description:
https://www.encodeproject.org/experiments/ENCSR718SDE/
***************
biological replicate number: 2
technical replicate number: 1
description: RLF ChIP-seq on human K562
experiment encode accession: ENCSR718SDE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB278GNJ
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: ENCBS118YJZ at ENCODE; https://www.encodeproject.org/ENCBS118YJZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from upper lobe of left lung (ENCLB680AKS)

description:
https://www.encodeproject.org/experiments/ENCSR703OGS/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Mon Sep 26 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR703OGS
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB680AKS

source_name: Homo sapiens upper lobe of left lung tissue female adult (51 year)

value: Control

value: upper lobe of left lung

value: tissue

value: Richard Myers, HAIB

value: 51 year

value: ENCBS002CZJ at ENCODE; https://www.encodeproject.org/ENCBS002CZJ/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/f8b74c7e-cf6f-47be-9589-d693effd4258/@@download/attachment/84269.svs


title: ChIP-seq from HepG2 (ENCLB939OXH)

description:
https://www.encodeproject.org/experiments/ENCSR159DQO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR159DQO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-12
lab: Richard Myers, HAIB
library encode accession: ENCLB939OXH

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-ERF

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: ENCBS074NWH at ENCODE; https://www.encodeproject.org/ENCBS074NWH/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB670OJE)

description:
https://www.encodeproject.org/experiments/ENCSR711SNW/
***************
biological replicate number: 2
technical replicate number: 1
description: NCOA1 ChIP-seq on human K562
experiment encode accession: ENCSR711SNW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB670OJE
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS839CNN at ENCODE; https://www.encodeproject.org/ENCBS839CNN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB813IKJ)

description:
https://www.encodeproject.org/experiments/ENCSR711SNW/
***************
biological replicate number: 1
technical replicate number: 1
description: NCOA1 ChIP-seq on human K562
experiment encode accession: ENCSR711SNW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB813IKJ
size range: 450-650

value: ENCBS048GNZ at ENCODE; https://www.encodeproject.org/ENCBS048GNZ/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB739RDM)

description:
https://www.encodeproject.org/experiments/ENCSR154EIH/
***************
biological replicate number: 1
technical replicate number: 1
description: TRIP13 ChIP-seq on human K562
experiment encode accession: ENCSR154EIH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB739RDM
size range: 450-650

value: cell line

value: ENCBS603CUX at ENCODE; https://www.encodeproject.org/ENCBS603CUX/


title: ChIP-seq from MCF-7 (ENCLB681VTA)

description:
https://www.encodeproject.org/experiments/ENCSR680YNB/
***************
biological replicate number: 2
technical replicate number: 1
description: mouse-IgG-control ChIP-seq on human MCF-7
experiment encode accession: ENCSR680YNB
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB681VTA
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: Control

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS034XKZ at ENCODE; https://www.encodeproject.org/ENCBS034XKZ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from HepG2 (ENCLB980NRS)

description:
https://www.encodeproject.org/experiments/ENCSR157CEN/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR157CEN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB980NRS

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-ZNF205

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS934PNP at ENCODE; https://www.encodeproject.org/ENCBS934PNP/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HepG2 (ENCLB761JBX)

description:
https://www.encodeproject.org/experiments/ENCSR157CEN/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR157CEN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB761JBX

value: cell line

value: ENCBS668HTS at ENCODE; https://www.encodeproject.org/ENCBS668HTS/


title: ChIP-seq from K562 (ENCLB002MVF)

description:
https://www.encodeproject.org/experiments/ENCSR145TSJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ATF4 ChIP-seq on human K562
experiment encode accession: ENCSR145TSJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB002MVF
size range: 450-650

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Michael Snyder, Stanford

value: ENCBS288EEL at ENCODE; https://www.encodeproject.org/ENCBS288EEL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB953OAM)

description:
https://www.encodeproject.org/experiments/ENCSR154EIH/
***************
biological replicate number: 2
technical replicate number: 1
description: TRIP13 ChIP-seq on human K562
experiment encode accession: ENCSR154EIH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB953OAM
size range: 450-650

value: ENCBS125ACM at ENCODE; https://www.encodeproject.org/ENCBS125ACM/


title: ChIP-seq from MCF-7 (ENCLB914UER)

description:
https://www.encodeproject.org/experiments/ENCSR680YNB/
***************
biological replicate number: 1
technical replicate number: 1
description: mouse-IgG-control ChIP-seq on human MCF-7
experiment encode accession: ENCSR680YNB
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB914UER
size range: 450-650

value: Control

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS168ISE at ENCODE; https://www.encodeproject.org/ENCBS168ISE/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from gastroesophageal sphincter (ENCLB906XDD)

description:
https://www.encodeproject.org/experiments/ENCSR146BGM/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human esophagogastric junction
experiment encode accession: ENCSR146BGM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR211EXK
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB906XDD
size range: 450-650

source_name: Homo sapiens gastroesophageal sphincter tissue female adult (51 year)

value: CTCF

value: gastroesophageal sphincter

value: tissue

value: 51 year

value: adult

value: ENCBS728DKU at ENCODE; https://www.encodeproject.org/ENCBS728DKU/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from HepG2 (ENCLB201MPG)

description:
https://www.encodeproject.org/experiments/ENCSR665UFC/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR665UFC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-12
lab: Richard Myers, HAIB
library encode accession: ENCLB201MPG

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-ZNF639

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS587HNL at ENCODE; https://www.encodeproject.org/ENCBS587HNL/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HepG2 (ENCLB197KDX)

description:
https://www.encodeproject.org/experiments/ENCSR665UFC/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR665UFC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-12
lab: Richard Myers, HAIB
library encode accession: ENCLB197KDX

value: ENCBS463LLB at ENCODE; https://www.encodeproject.org/ENCBS463LLB/


title: ChIP-seq from K562 (ENCLB675PIJ)

description:
https://www.encodeproject.org/experiments/ENCSR138YYY/
***************
biological replicate number: 2
technical replicate number: 1
description: GABPB1 ChIP-seq on human K562
experiment encode accession: ENCSR138YYY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB675PIJ
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS783WYV at ENCODE; https://www.encodeproject.org/ENCBS783WYV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB962LRB)

description:
https://www.encodeproject.org/experiments/ENCSR669NFS/
***************
biological replicate number: 3
technical replicate number: 1
description: ARNT ChIP-seq on human K562
experiment encode accession: ENCSR669NFS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB962LRB
size range: 450-650

value: ARNT

value: cell line

value: adult

value: ENCBS520IYS at ENCODE; https://www.encodeproject.org/ENCBS520IYS/


title: ChIP-seq from K562 (ENCLB807FZV)

description:
https://www.encodeproject.org/experiments/ENCSR145TSJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATF4 ChIP-seq on human K562
experiment encode accession: ENCSR145TSJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB807FZV
size range: 450-650

value: ENCBS697XFI at ENCODE; https://www.encodeproject.org/ENCBS697XFI/


title: ChIP-seq from K562 (ENCLB299GQE)

description:
https://www.encodeproject.org/experiments/ENCSR138YYY/
***************
biological replicate number: 1
technical replicate number: 1
description: GABPB1 ChIP-seq on human K562
experiment encode accession: ENCSR138YYY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB299GQE
size range: 450-650

value: ENCBS465MWC at ENCODE; https://www.encodeproject.org/ENCBS465MWC/


title: ChIP-seq from K562 (ENCLB082UZD)

description:
https://www.encodeproject.org/experiments/ENCSR669NFS/
***************
biological replicate number: 4
technical replicate number: 1
description: ARNT ChIP-seq on human K562
experiment encode accession: ENCSR669NFS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB082UZD
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: ENCBS953HJY at ENCODE; https://www.encodeproject.org/ENCBS953HJY/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB062YUO)

description:
https://www.encodeproject.org/experiments/ENCSR138SFL/
***************
biological replicate number: 1
technical replicate number: 1
description: MCM2 ChIP-seq on human K562
experiment encode accession: ENCSR138SFL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-11-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB062YUO
size range: 450-650

value: ENCBS320BUL at ENCODE; https://www.encodeproject.org/ENCBS320BUL/


title: ChIP-seq from HEK293 (ENCLB847NVY)

description:
https://www.encodeproject.org/experiments/ENCSR125ULS/
***************
biological replicate number: 3
technical replicate number: 1
description: eGFP-ZNF561 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR125ULS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB847NVY
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF561 originated from HEK293

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS966LBR at ENCODE; https://www.encodeproject.org/ENCBS966LBR/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from HepG2 (ENCLB316XME)

description:
https://www.encodeproject.org/experiments/ENCSR159DQO/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR159DQO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-12
lab: Richard Myers, HAIB
library encode accession: ENCLB316XME

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS437FOW at ENCODE; https://www.encodeproject.org/ENCBS437FOW/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB630OMO)

description:
https://www.encodeproject.org/experiments/ENCSR138SFL/
***************
biological replicate number: 3
technical replicate number: 1
description: MCM2 ChIP-seq on human K562
experiment encode accession: ENCSR138SFL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-11-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB630OMO

value: cell line

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS596DHR at ENCODE; https://www.encodeproject.org/ENCBS596DHR/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HEK293 (ENCLB955WDG)

description:
https://www.encodeproject.org/experiments/ENCSR125ULS/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF561 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR125ULS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB955WDG
size range: 450-650

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS407ZGM at ENCODE; https://www.encodeproject.org/ENCBS407ZGM/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from K562 (ENCLB642ESH)

description:
https://www.encodeproject.org/experiments/ENCSR664AOA/
***************
biological replicate number: 1
technical replicate number: 1
description: TRIM25 ChIP-seq on human K562
experiment encode accession: ENCSR664AOA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB642ESH
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: ENCBS839CNN at ENCODE; https://www.encodeproject.org/ENCBS839CNN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB757AVG)

description:
https://www.encodeproject.org/experiments/ENCSR713IFY/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR713IFY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000FCA
encode release date: 2018-03-16
lab: Richard Myers, HAIB
library encode accession: ENCLB757AVG

source_name: Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-ZNF146

value: cell line

value: female

value: Richard Myers, HAIB

value: ENCBS108KJU at ENCODE; https://www.encodeproject.org/ENCBS108KJU/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: Total mock rep 3

city: Cork

first: Audrey

middle: M

last: Michel

state: Cork

address: Western Gateway, Western Road

department: School of Biochemistry and Cell Biology

country: Ireland

institute: University College Cork

library_source: transcriptomic

data_processing:
Raw Ribo-seq and RNA-seq reads were trimmed of adapter using  cutadapt (version 1.18) with the following command: cutadapt -f fastq -a CTGTAGGCACCATCAAT --minimum-length=25 <input>.fastq -o <output>.fastq.
Human rRNA sequences were retrieved from the following accessions: NR_003286, NR_003287, NR_023363, NR_003285. Reads aligning to these sequences were then removed using bowtie (version 1.0.1) with the following command: bowtie -v 3 --norc <path_to_rRNA_indices> -q <input>.fastq --un <output>.fastq
Bowtie was then used to align the remaining reads to a transcriptome consisting of a concatenation of the GENCODE version 25 human transcriptome and the HCV genomic sequence. The following command was used: bowtie --norc -a -m 100 -n 2 --seedlen 25 <path_to_transcriptome_indices> -q <input>.fastq <output>.sam.
The SAM file is then converted to a BAM file and sorted by readname using samtools (version) and the following commands: samtools view -b -S <input>.sam -o <output>.bam; samtools sort -m 1G -n <input>.bam <output>.bam_sorted.
The genomic position(s) of each mapped read was determined, and if the read aligned to only one genomic position it was classed as an unambiguously mapped read, otherwise the read was classed as an ambiguously mapped read.
Genome_build: hg38
Supplementary_files_format_and_content: The differential gene expression analysis results were downloaded from Trips-Viz in .csv format and converted to Excel (.xlsx).   Each file provides the following information: Transcript ID; Gene; Group representing the sample comparisons;
Supplementary_files_format_and_content: Fold change (log2); Geometric Mean (log2) of Ribo-Seq/RNA-Seq counts of genes of similar expression levels;  Bin mean;  Bin standard deviation;  Z-score;
Supplementary_files_format_and_content: e.g for the RiboSeq samples: RiboSeq_Cond1_count representing the raw Ribo-seq count of one contrast sample; RiboSeq_Cond2_count of the second contrast sample;
Supplementary_files_format_and_content: Normalised_RiboSeq_Cond1_count repreenting the raw Ribo-seq counts normalised by the number of mapped reads ; Normalised_RiboSeq_Cond2_count
Supplementary_files_format_and_content: The above results are repeated for each H replicate compared with each M replicate (H1 vs M1; H2 vs M2; H3 vs M3; H1 vs M2; H2 vs M3; H3 vs M1; H1 vs M3; H2 vs M1; H3 vs M2)
Supplementary_files_format_and_content: Overall Average fold change (log2); Overall Average Z-score

molecule: total RNA

source_name: heptoma cells

extract_protocol:
Six days post transfection cells were washed with ice-cold PBS with cycloheximide and harvested by adding 500 µl polysome lysis buffer (20 mM Tris–HCl (pH 7.5), 250 mM NaCl, 1.5 mM MgCl2, 1 mM DTT, 0.5 % Triton X-100, 100 μg/ml, 20 U/ml TURBO DNase) per 15 cm2 dish
Libraries were prepared using the ribosome profiling method.

tag: cell line

tag: time

value: 6 days post mock transfection

tag: molecule

value: Total RNA


title: Total mock rep 1


title: ChIP-seq from K562 (ENCLB023RUL)

description:
https://www.encodeproject.org/experiments/ENCSR658WFQ/
***************
biological replicate number: 2
technical replicate number: 1
description: NCOA1 ChIP-seq on human K562
experiment encode accession: ENCSR658WFQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB023RUL
size range: 450-650

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Michael Snyder, Stanford

value: ENCBS344LIE at ENCODE; https://www.encodeproject.org/ENCBS344LIE/


title: ChIP-seq from K562 (ENCLB356ZNT)

description:
https://www.encodeproject.org/experiments/ENCSR119ULQ/
***************
biological replicate number: 1
technical replicate number: 1
description: NCOA4 ChIP-seq on human K562
experiment encode accession: ENCSR119ULQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB356ZNT
size range: 450-650

value: ENCBS352MRW at ENCODE; https://www.encodeproject.org/ENCBS352MRW/


title: ChIP-seq from K562 (ENCLB200LBX)

description:
https://www.encodeproject.org/experiments/ENCSR658WFQ/
***************
biological replicate number: 1
technical replicate number: 1
description: NCOA1 ChIP-seq on human K562
experiment encode accession: ENCSR658WFQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB200LBX
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: ENCBS207UAM at ENCODE; https://www.encodeproject.org/ENCBS207UAM/


title: Total mock rep 2


title: ChIP-seq from K562 (ENCLB459FUL)

description:
https://www.encodeproject.org/experiments/ENCSR120MPG/
***************
biological replicate number: 2
technical replicate number: 1
description: PRDM10 ChIP-seq on human K562
experiment encode accession: ENCSR120MPG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB459FUL
size range: 450-650

value: ENCBS187ZIN at ENCODE; https://www.encodeproject.org/ENCBS187ZIN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB536NKD)

description:
https://www.encodeproject.org/experiments/ENCSR119ULQ/
***************
biological replicate number: 2
technical replicate number: 1
description: NCOA4 ChIP-seq on human K562
experiment encode accession: ENCSR119ULQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB536NKD
size range: 450-650

value: cell line

value: ENCBS185MQS at ENCODE; https://www.encodeproject.org/ENCBS185MQS/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: Ribo mock rep 2

value: Ribo protected RNA


title: Ribo mock rep 3


title: Total HCV rep3

value: 6 days post HCV transfection


title: ChIP-seq from K562 (ENCLB481MNK)

description:
https://www.encodeproject.org/experiments/ENCSR120MPG/
***************
biological replicate number: 1
technical replicate number: 1
description: PRDM10 ChIP-seq on human K562
experiment encode accession: ENCSR120MPG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB481MNK
size range: 450-650

value: female

value: ENCBS727RLP at ENCODE; https://www.encodeproject.org/ENCBS727RLP/


title: ChIP-seq from HepG2 (ENCLB572QIZ)

description:
https://www.encodeproject.org/experiments/ENCSR656SIB/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR656SIB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-01-25
lab: Richard Myers, HAIB
library encode accession: ENCLB572QIZ

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-ZBED5

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS740EJN at ENCODE; https://www.encodeproject.org/ENCBS740EJN/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: Ribo mock rep 1

value: 6 days post mock transfection


title: ChIP-seq from K562 (ENCLB185IDQ)

description:
https://www.encodeproject.org/experiments/ENCSR635EXI/
***************
biological replicate number: 1
technical replicate number: 1
description: ZSCAN29 ChIP-seq on human K562
experiment encode accession: ENCSR635EXI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-11-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB185IDQ
size range: 450-650

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS389PVA at ENCODE; https://www.encodeproject.org/ENCBS389PVA/


title: ChIP-seq from K562 (ENCLB606IZY)

description:
https://www.encodeproject.org/experiments/ENCSR115BBC/
***************
biological replicate number: 1
technical replicate number: 1
description: ASH1L ChIP-seq on human K562
experiment encode accession: ENCSR115BBC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB606IZY
size range: 450-650

value: cell line

value: ENCBS697XFI at ENCODE; https://www.encodeproject.org/ENCBS697XFI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: Total HCV rep2

value: 6 days post HCV transfection

value: Total RNA


title: ChIP-seq from K562 (ENCLB334TKZ)

description:
https://www.encodeproject.org/experiments/ENCSR115BBC/
***************
biological replicate number: 2
technical replicate number: 1
description: ASH1L ChIP-seq on human K562
experiment encode accession: ENCSR115BBC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB334TKZ
size range: 450-650

value: female

value: ENCBS831ATS at ENCODE; https://www.encodeproject.org/ENCBS831ATS/


title: Total HCV rep1


title: ChIP-seq from K562 (ENCLB772TER)

description:
https://www.encodeproject.org/experiments/ENCSR635EXI/
***************
biological replicate number: 3
technical replicate number: 1
description: ZSCAN29 ChIP-seq on human K562
experiment encode accession: ENCSR635EXI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-11-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB772TER

value: ENCBS187ZIN at ENCODE; https://www.encodeproject.org/ENCBS187ZIN/


title: ChIP-seq from vagina (ENCLB171GUB)

description:
https://www.encodeproject.org/experiments/ENCSR645JVW/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on vagina
experiment encode accession: ENCSR645JVW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR032SLG
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB171GUB

source_name: Homo sapiens vagina tissue female adult (51 year)

value: vagina

value: tissue

value: Richard Myers, HAIB

value: 51 year

value: ENCBS663CSI at ENCODE; https://www.encodeproject.org/ENCBS663CSI/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/3f8fc69e-ea3f-4971-ba3a-231a1e60e46c/@@download/attachment/84259.svs


title: ChIP-seq from K562 (ENCLB628KPQ)

description:
https://www.encodeproject.org/experiments/ENCSR664AOA/
***************
biological replicate number: 2
technical replicate number: 1
description: TRIM25 ChIP-seq on human K562
experiment encode accession: ENCSR664AOA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB628KPQ
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Michael Snyder, Stanford

value: ENCBS118YJZ at ENCODE; https://www.encodeproject.org/ENCBS118YJZ/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: Ribo HCV rep 3

value: 6 days post HCV transfection

value: Ribo protected RNA


title: Ribo HCV rep 1


title: ChIP-seq from HepG2 (ENCLB955KHX)

description:
https://www.encodeproject.org/experiments/ENCSR112ALD/
***************
biological replicate number: 2
technical replicate number: 1
description: CREB1 ChIP-seq on human HepG2
experiment encode accession: ENCSR112ALD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2017-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB955KHX
size range: 450-650

source_name: Homo sapiens HepG2 immortalized cell line

value: cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS577XCP at ENCODE; https://www.encodeproject.org/ENCBS577XCP/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from K562 (ENCLB767DOQ)

description:
https://www.encodeproject.org/experiments/ENCSR632TJQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ILF3 ChIP-seq on human K562
experiment encode accession: ENCSR632TJQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2018-02-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB767DOQ
size range: 450-650

value: female

value: ENCBS366EQO at ENCODE; https://www.encodeproject.org/ENCBS366EQO/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HepG2 (ENCLB296HFM)

description:
https://www.encodeproject.org/experiments/ENCSR112ALD/
***************
biological replicate number: 3
technical replicate number: 1
description: CREB1 ChIP-seq on human HepG2
experiment encode accession: ENCSR112ALD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2017-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB296HFM

source_name: Homo sapiens HepG2 cell line

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS337WJM at ENCODE; https://www.encodeproject.org/ENCBS337WJM/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from sigmoid colon (ENCLB131ZRU)

description:
https://www.encodeproject.org/experiments/ENCSR633OEO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on sigmoid colon
experiment encode accession: ENCSR633OEO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR576THU
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB131ZRU

value: sigmoid colon

value: tissue

value: Richard Myers, HAIB

value: 51 year

value: adult

value: ENCBS538MFJ at ENCODE; https://www.encodeproject.org/ENCBS538MFJ/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/76821021-0729-4f4a-8283-353359136254/@@download/attachment/84281.svs


title: ChIP-seq from right atrium auricular region (ENCLB653UDR)

description:
https://www.encodeproject.org/experiments/ENCSR457JBY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human right atrium auricular region
experiment encode accession: ENCSR457JBY
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB653UDR
size range: 450-650

source_name: Homo sapiens female adult (53 years) right atrium auricular region tissue

value: Control

value: right atrium auricular region

value: 53 year

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: ENCBS822YKL at ENCODE; https://www.encodeproject.org/ENCBS822YKL/


title: ChIP-seq from subcutaneous adipose tissue (ENCLB528SEP)

description:
https://www.encodeproject.org/experiments/ENCSR498VPN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human adipose tissue
experiment encode accession: ENCSR498VPN
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB528SEP
size range: 450-650

source_name: Homo sapiens male adult (37 years) subcutaneous adipose tissue

value: subcutaneous adipose tissue

value: male

value: 37 year

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/

value: ENCBS950NCX at ENCODE; https://www.encodeproject.org/ENCBS950NCX/


title: ChIP-seq from HepG2 (ENCLB578RXP)

description:
https://www.encodeproject.org/experiments/ENCSR656SIB/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR656SIB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-01-25
lab: Richard Myers, HAIB
library encode accession: ENCLB578RXP

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS578CCZ at ENCODE; https://www.encodeproject.org/ENCBS578CCZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from GM12878 (ENCLB201ZKZ)

description:
https://www.encodeproject.org/experiments/ENCSR961PPA/
***************
biological replicate number: 2
technical replicate number: 1
description: ATF2 ChIP-seq on human GM12878
experiment encode accession: ENCSR961PPA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2016-10-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB201ZKZ
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: adult

value: unknown

value: female

value: ENCBS389LEA at ENCODE; https://www.encodeproject.org/ENCBS389LEA/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from sigmoid colon (ENCLB361IRF)

description:
https://www.encodeproject.org/experiments/ENCSR100FGR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Mon Sep 19 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR100FGR
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB361IRF

source_name: Homo sapiens sigmoid colon tissue male adult (37 years)

value: Control

value: sigmoid colon

value: tissue

value: male

value: 37 year

value: ENCBS806WZK at ENCODE; https://www.encodeproject.org/ENCBS806WZK/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from GM12878 (ENCLB760UZO)

description:
https://www.encodeproject.org/experiments/ENCSR437GBJ/
***************
biological replicate number: 2
technical replicate number: 1
description: NFATC3 ChIP-seq on human GM12878
experiment encode accession: ENCSR437GBJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO, ENCSR398JTO
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB760UZO
size range: 450-650

value: cell line

value: Michael Snyder, Stanford

value: ENCBS339VHO at ENCODE; https://www.encodeproject.org/ENCBS339VHO/


title: ChIP-seq from GM12878 (ENCLB478HBV)

description:
https://www.encodeproject.org/experiments/ENCSR437GBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: NFATC3 ChIP-seq on human GM12878
experiment encode accession: ENCSR437GBJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO, ENCSR398JTO
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB478HBV
size range: 450-650

value: ENCBS488GLI at ENCODE; https://www.encodeproject.org/ENCBS488GLI/


title: Ribo HCV rep 2

value: 6 days post HCV transfection

value: Ribo protected RNA


title: ChIP-seq from MCF-7 (ENCLB702DPT)

description:
https://www.encodeproject.org/experiments/ENCSR423RTK/
***************
biological replicate number: 1
technical replicate number: 1
description: GATA3 ChIP-seq on human MCF-7
experiment encode accession: ENCSR423RTK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2016-10-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB702DPT
size range: 450-650

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: adult

value: ENCBS947NBH at ENCODE; https://www.encodeproject.org/ENCBS947NBH/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from MCF-7 (ENCLB595WYZ)

description:
https://www.encodeproject.org/experiments/ENCSR423RTK/
***************
biological replicate number: 2
technical replicate number: 1
description: GATA3 ChIP-seq on human MCF-7
experiment encode accession: ENCSR423RTK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2016-10-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB595WYZ
size range: 450-650

value: ENCBS345ZJP at ENCODE; https://www.encodeproject.org/ENCBS345ZJP/


title: ChIP-seq from breast epithelium (ENCLB760RGU)

description:
https://www.encodeproject.org/experiments/ENCSR621IYT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Fri Nov 11 2016 00:00:00 GMT-0600 (CST)
experiment encode accession: ENCSR621IYT
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB760RGU

source_name: Homo sapiens breast epithelium tissue female adult (53 years)

value: Control

value: breast epithelium

value: tissue

value: Richard Myers, HAIB

value: 53 year

value: ENCBS377TON at ENCODE; https://www.encodeproject.org/ENCBS377TON/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/0d43876e-94ba-4c85-a056-01dbc5065e3d/@@download/attachment/83392.svs


title: ChIP-seq from GM12878 (ENCLB737BPP)

description:
https://www.encodeproject.org/experiments/ENCSR961PPA/
***************
biological replicate number: 1
technical replicate number: 1
description: ATF2 ChIP-seq on human GM12878
experiment encode accession: ENCSR961PPA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2016-10-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB737BPP
size range: 450-650

source_name: Homo sapiens GM12878 cell line

value: cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCBS891HAO at ENCODE; https://www.encodeproject.org/ENCBS891HAO/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; https://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from HEK293 (ENCLB879ISG)

description:
https://www.encodeproject.org/experiments/ENCSR619OUC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZBTB6 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR619OUC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB879ISG
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZBTB6 originated from HEK293

value: female

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS300DCZ at ENCODE; https://www.encodeproject.org/ENCBS300DCZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from suprapubic skin (ENCLB174FIH)

description:
https://www.encodeproject.org/experiments/ENCSR411EGZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human suprapubic skin
experiment encode accession: ENCSR411EGZ
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB174FIH
size range: 450-650

source_name: Homo sapiens male adult (37 years) suprapubic skin tissue

value: Control

value: suprapubic skin

value: tissue

value: male

value: adult

value: 37 year

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/

value: ENCBS441VHN at ENCODE; https://www.encodeproject.org/ENCBS441VHN/


title: ChIP-seq from MCF-7 (ENCLB719YVP)

description:
https://www.encodeproject.org/experiments/ENCSR419ODQ/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF507 ChIP-seq on human MCF-7
experiment encode accession: ENCSR419ODQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB719YVP
size range: 450-650

source_name: Homo sapiens MCF-7 cell line

value: cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCBS764NNP at ENCODE; https://www.encodeproject.org/ENCBS764NNP/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; https://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from K562 (ENCLB624UYN)

description:
https://www.encodeproject.org/experiments/ENCSR628APV/
***************
biological replicate number: 1
technical replicate number: 1
description: MCM5 ChIP-seq on human K562
experiment encode accession: ENCSR628APV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB624UYN
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS207UAM at ENCODE; https://www.encodeproject.org/ENCBS207UAM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB877BWJ)

description:
https://www.encodeproject.org/experiments/ENCSR614FBE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ETS2 tagged MCF7 cell line.
experiment encode accession: ENCSR614FBE
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB877BWJ

source_name: Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged eGFP-ETS2

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ETS2

value: adult

value: Kevin White, UChicago

value: ENCBS506IZD at ENCODE; https://www.encodeproject.org/ENCBS506IZD/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ83; https://web.expasy.org/cellosaurus/CVCL_GZ83


description:
https://www.encodeproject.org/experiments/ENCSR607EOD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human suprapubic skin
experiment encode accession: ENCSR607EOD
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB174FIH
size range: 450-650

value: suprapubic skin

value: tissue

value: male

value: 37 year

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/

value: ENCBS441VHN at ENCODE; https://www.encodeproject.org/ENCBS441VHN/


title: ChIP-seq from liver (ENCLB373UAU)

description:
https://www.encodeproject.org/experiments/ENCSR098XMN/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on RXRA-human
experiment encode accession: ENCSR098XMN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2018-02-06
lab: Richard Myers, HAIB
library encode accession: ENCLB373UAU

source_name: Homo sapiens liver tissue male adult (32 years)

value: RXRA

value: liver

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from liver (ENCLB118LNZ)

description:
https://www.encodeproject.org/experiments/ENCSR098XMN/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on RXRA-human
experiment encode accession: ENCSR098XMN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2018-02-06
lab: Richard Myers, HAIB
library encode accession: ENCLB118LNZ

value: adult


title: ChIP-seq from HepG2 (ENCLB034QVZ)

description:
https://www.encodeproject.org/experiments/ENCSR096IIB/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR096IIB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB034QVZ

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-ETV5

value: cell line

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS020ZWR at ENCODE; https://www.encodeproject.org/ENCBS020ZWR/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB105FUQ)

description:
https://www.encodeproject.org/experiments/ENCSR628APV/
***************
biological replicate number: 2
technical replicate number: 1
description: MCM5 ChIP-seq on human K562
experiment encode accession: ENCSR628APV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB105FUQ
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS994WPS at ENCODE; https://www.encodeproject.org/ENCBS994WPS/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HEK293 (ENCLB746GMD)

description:
https://www.encodeproject.org/experiments/ENCSR619OUC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZBTB6 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR619OUC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB746GMD
size range: 450-650

value: cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZBTB6 under the control of a CMV promoter.

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS537JPD at ENCODE; https://www.encodeproject.org/ENCBS537JPD/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from MCF-7 (ENCLB204XLF)

description:
https://www.encodeproject.org/experiments/ENCSR934JDG/
***************
biological replicate number: 2
technical replicate number: 1
description: CLOCK ChIP-seq on human MCF-7
experiment encode accession: ENCSR934JDG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB204XLF
size range: 450-650

value: CLOCK

value: breast cancer (adenocarcinoma)

value: adult

value: 69 year

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCBS764NNP at ENCODE; https://www.encodeproject.org/ENCBS764NNP/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; https://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from gastroesophageal sphincter (ENCLB548YUT)

description:
https://www.encodeproject.org/experiments/ENCSR097EEA/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human esophagogastric junction
experiment encode accession: ENCSR097EEA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR361LSG
encode release date: 2016-07-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB548YUT
size range: 450-650

source_name: Homo sapiens female adult (53 years) gastroesophageal sphincter tissue

value: gastroesophageal sphincter

value: tissue

value: female

value: 53 year

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: ENCBS185KVE at ENCODE; https://www.encodeproject.org/ENCBS185KVE/


title: ChIP-seq from HepG2 (ENCLB854LFF)

description:
https://www.encodeproject.org/experiments/ENCSR096IIB/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR096IIB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB854LFF

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS879WOL at ENCODE; https://www.encodeproject.org/ENCBS879WOL/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from MCF-7 (ENCLB990PKB)

description:
https://www.encodeproject.org/experiments/ENCSR419ODQ/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF507 ChIP-seq on human MCF-7
experiment encode accession: ENCSR419ODQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB990PKB
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: adult

value: ENCBS295PFW at ENCODE; https://www.encodeproject.org/ENCBS295PFW/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from MCF-7 (ENCLB436YNS)

description:
https://www.encodeproject.org/experiments/ENCSR934JDG/
***************
biological replicate number: 1
technical replicate number: 1
description: CLOCK ChIP-seq on human MCF-7
experiment encode accession: ENCSR934JDG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB436YNS
size range: 450-650

value: CLOCK

value: female

value: Michael Snyder, Stanford


title: ChIP-seq from MCF-7 (ENCLB453YCR)

description:
https://www.encodeproject.org/experiments/ENCSR402JAC/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF574 ChIP-seq on human MCF-7
experiment encode accession: ENCSR402JAC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB453YCR
size range: 450-650

value: cell line


title: ChIP-seq from HepG2 (ENCLB979SIF)

description:
https://www.encodeproject.org/experiments/ENCSR604UJV/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR604UJV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB979SIF

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-IRF2

value: male

value: ENCBS240KAH at ENCODE; https://www.encodeproject.org/ENCBS240KAH/


title: ChIP-seq from esophagus muscularis mucosa (ENCLB712ECY)

description:
https://www.encodeproject.org/experiments/ENCSR089MPD/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Mon Sep 12 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR089MPD
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB712ECY

source_name: Homo sapiens esophagus muscularis mucosa tissue female adult (51 year)

value: Control

value: esophagus muscularis mucosa

value: tissue

value: 51 year

value: ENCBS256BDN at ENCODE; https://www.encodeproject.org/ENCBS256BDN/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/ff8c38b8-9743-4b9d-92df-11776af354c5/@@download/attachment/84275.svs


title: ChIP-seq from K562 (ENCLB599JSA)

description:
https://www.encodeproject.org/experiments/ENCSR928KOR/
***************
biological replicate number: 1
technical replicate number: 1
description: GMEB1 ChIP-seq on human K562
experiment encode accession: ENCSR928KOR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB599JSA
size range: 450-650

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS298PAM at ENCODE; https://www.encodeproject.org/ENCBS298PAM/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HepG2 (ENCLB922APU)

description:
https://www.encodeproject.org/experiments/ENCSR604UJV/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR604UJV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB922APU

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS671SMQ at ENCODE; https://www.encodeproject.org/ENCBS671SMQ/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB612FBB)

description:
https://www.encodeproject.org/experiments/ENCSR928KOR/
***************
biological replicate number: 2
technical replicate number: 1
description: GMEB1 ChIP-seq on human K562
experiment encode accession: ENCSR928KOR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB612FBB
size range: 450-650

value: cell line

value: adult

value: female

value: Michael Snyder, Stanford

value: ENCBS357NWO at ENCODE; https://www.encodeproject.org/ENCBS357NWO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from liver (ENCLB725KCO)

description:
https://www.encodeproject.org/experiments/ENCSR085IXF/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on SP1-human
experiment encode accession: ENCSR085IXF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR931XLP, ENCSR019XRC
encode release date: 2018-02-08
lab: Richard Myers, HAIB
library encode accession: ENCLB725KCO

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from liver (ENCLB861LSL)

description:
https://www.encodeproject.org/experiments/ENCSR085IXF/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on SP1-human
experiment encode accession: ENCSR085IXF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR931XLP, ENCSR019XRC
encode release date: 2018-02-08
lab: Richard Myers, HAIB
library encode accession: ENCLB861LSL


title: ChIP-seq from MCF-7 (ENCLB896WJY)

description:
https://www.encodeproject.org/experiments/ENCSR875PEI/
***************
biological replicate number: 3
technical replicate number: 1
description: TRIM22 ChIP-seq on human MCF-7
experiment encode accession: ENCSR875PEI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2017-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB896WJY

value: breast cancer (adenocarcinoma)

value: 69 year

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCBS902LKX at ENCODE; https://www.encodeproject.org/ENCBS902LKX/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; https://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from K562 (ENCLB855SLH)

description:
https://www.encodeproject.org/experiments/ENCSR349TZO/
***************
biological replicate number: 1
technical replicate number: 1
description: NCOA2 ChIP-seq on human K562
experiment encode accession: ENCSR349TZO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB855SLH
size range: 450-650

value: cell line

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS298PAM at ENCODE; https://www.encodeproject.org/ENCBS298PAM/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB128AXH)

description:
https://www.encodeproject.org/experiments/ENCSR596IKD/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ETS2 ChIP-seq on human K562
experiment encode accession: ENCSR596IKD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR614FBE
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB128AXH

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ETS2

value: Kevin White, UChicago

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS381AAA at ENCODE; https://www.encodeproject.org/ENCBS381AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ83; https://web.expasy.org/cellosaurus/CVCL_GZ83