title: siRNA RNA-seq from K562 (ENCLB652MLJ)

description:
https://www.encodeproject.org/experiments/ENCSR301SWM/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting TCP1.
experiment encode accession: ENCSR301SWM
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR608CVU, ENCSR074DIJ
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB652MLJ
size range: >200

source_name: Homo sapiens K562 cell line expressing RNAi targeting TCP1

value: K562 cells treated with a siRNA knockdown against TCP1, used in RNA-seq experiments.

value: female

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS608LIF at ENCODE; https://www.encodeproject.org/ENCBS608LIF/


title: siRNA RNA-seq from K562 (ENCLB050KFQ)

status: Public on Mar 02 2019

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR071JWS/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting LMNA.
experiment encode accession: ENCSR071JWS
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR608CVU, ENCSR074DIJ
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB050KFQ
size range: >200

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Homo sapiens

source_name: Homo sapiens K562 cell line expressing RNAi targeting LMNA

tag: antibody

value: LMNA

tag: line

value: cell line

tag: description

value: K562 cells treated with a siRNA knockdown against LMNA, used in RNA-seq experiments.

tag: biosample encode accession

tag: Sex

tag: health state

value: chronic myelogenous leukemia (CML)

tag: dev stage

value: adult

tag: age

tag: lab

value: Sherman Weissman, Yale

tag: link

value: ENCBS043RHY at ENCODE; https://www.encodeproject.org/ENCBS043RHY/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: siRNA RNA-seq from K562 (ENCLB187WOV)

description:
https://www.encodeproject.org/experiments/ENCSR174FUO/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting STAT5A.
experiment encode accession: ENCSR174FUO
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR341RCF, ENCSR074DIJ
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB187WOV
size range: >200

source_name: Homo sapiens K562 cell line expressing RNAi targeting STAT5A

value: K562 cells treated with a siRNA knockdown against STAT5A, used in RNA-seq experiments.

value: ENCBS852FQX at ENCODE; https://www.encodeproject.org/ENCBS852FQX/


title: siRNA RNA-seq from K562 (ENCLB988OBA)

description:
https://www.encodeproject.org/experiments/ENCSR174FUO/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting STAT5A.
experiment encode accession: ENCSR174FUO
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR341RCF, ENCSR074DIJ
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB988OBA
size range: >200

value: ENCBS485SYX at ENCODE; https://www.encodeproject.org/ENCBS485SYX/


title: ChIP-seq from K562 (ENCLB504KOE)

description:
https://www.encodeproject.org/experiments/ENCSR033NQK/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF830 ChIP-seq on human K562
experiment encode accession: ENCSR033NQK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB504KOE
size range: 450-650

library_source: genomic

molecule: genomic DNA

source_name: Homo sapiens K562 immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: Michael Snyder, Stanford

value: ENCBS207UAM at ENCODE; https://www.encodeproject.org/ENCBS207UAM/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: siRNA RNA-seq from K562 (ENCLB124AGJ)

description:
https://www.encodeproject.org/experiments/ENCSR669QED/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting LMNB2.
experiment encode accession: ENCSR669QED
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR608CVU, ENCSR074DIJ
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB124AGJ
size range: >200

source_name: Homo sapiens K562 cell line expressing RNAi targeting LMNB2

value: K562 cells treated with a siRNA knockdown against LMNB2, used in RNA-seq experiments.

value: female

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS058NGX at ENCODE; https://www.encodeproject.org/ENCBS058NGX/


title: ChIP-seq from K562 (ENCLB856XCJ)

description:
https://www.encodeproject.org/experiments/ENCSR028UIU/
***************
biological replicate number: 1
technical replicate number: 1
description: ATF3 ChIP-seq on human K562
experiment encode accession: ENCSR028UIU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG, ENCSR173USI
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB856XCJ
size range: 450-650

value: cell line

value: adult

value: chronic myelogenous leukemia (CML)

value: ENCBS734NZL at ENCODE; https://www.encodeproject.org/ENCBS734NZL/


title: ChIP-seq from heart left ventricle (ENCLB249FEE)

description:
https://www.encodeproject.org/experiments/ENCSR544APK/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human heart left ventricle
experiment encode accession: ENCSR544APK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR035ELI
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB249FEE
size range: 450-650

source_name: Homo sapiens heart left ventricle tissue female adult (53 years)

value: CTCF

value: heart left ventricle

value: tissue

value: ENCBS106FXL at ENCODE; https://www.encodeproject.org/ENCBS106FXL/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: siRNA RNA-seq from K562 (ENCLB875ICT)

description:
https://www.encodeproject.org/experiments/ENCSR669QED/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting LMNB2.
experiment encode accession: ENCSR669QED
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR608CVU, ENCSR074DIJ
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB875ICT
size range: >200

value: Sherman Weissman, Yale

value: ENCBS133PQL at ENCODE; https://www.encodeproject.org/ENCBS133PQL/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from hTERT-HME1 (ENCLB399PKO)

description:
https://www.encodeproject.org/experiments/ENCSR991JXX/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human hTERT-HME1 cells
experiment encode accession: ENCSR991JXX
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB399PKO
size range: 450-650

source_name: Homo sapiens hTERT-HME1 cell line

value: Normal

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO912VZC; https://www.encodeproject.org/ENCDO912VZC/

value: ENCBS062ZDL at ENCODE; https://www.encodeproject.org/ENCBS062ZDL/

value: ENCODE dbxrefs Cellosaurus CVCL_3383; https://web.expasy.org/cellosaurus/CVCL_3383


title: ChIP-seq from K562 (ENCLB907LDV)

description:
https://www.encodeproject.org/experiments/ENCSR024LKA/
***************
biological replicate number: 3
technical replicate number: 1
description: HDAC3 ChIP-seq on human K562
experiment encode accession: ENCSR024LKA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB907LDV
size range: 450-650

value: cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: female

value: ENCBS603CUX at ENCODE; https://www.encodeproject.org/ENCBS603CUX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HEK293 (ENCLB358DTY)

description:
https://www.encodeproject.org/experiments/ENCSR503DPC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF513 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR503DPC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB358DTY
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF513 originated from HEK293

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS540LEG at ENCODE; https://www.encodeproject.org/ENCBS540LEG/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from K562 (ENCLB253API)

description:
https://www.encodeproject.org/experiments/ENCSR024LKA/
***************
biological replicate number: 4
technical replicate number: 1
description: HDAC3 ChIP-seq on human K562
experiment encode accession: ENCSR024LKA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB253API
size range: 450-650

value: adult

value: chronic myelogenous leukemia (CML)

value: Michael Snyder, Stanford

value: ENCBS344LIE at ENCODE; https://www.encodeproject.org/ENCBS344LIE/


title: ChIA-PET from hTERT-HME1 (ENCLB154MEI)

description:
https://www.encodeproject.org/experiments/ENCSR991JXX/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human hTERT-HME1 cells
experiment encode accession: ENCSR991JXX
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB154MEI
size range: 450-650

value: cell line

value: Normal

value: Derived from ENCODE donor ENCDO912VZC; https://www.encodeproject.org/ENCDO912VZC/

value: ENCBS245QRF at ENCODE; https://www.encodeproject.org/ENCBS245QRF/

value: ENCODE dbxrefs Cellosaurus CVCL_3383; https://web.expasy.org/cellosaurus/CVCL_3383


title: siRNA RNA-seq from K562 (ENCLB632UHW)

description:
https://www.encodeproject.org/experiments/ENCSR301SWM/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting TCP1.
experiment encode accession: ENCSR301SWM
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR608CVU, ENCSR074DIJ
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB632UHW
size range: >200

value: K562 cells treated with a siRNA knockdown against TCP1, used in RNA-seq experiments.

value: female

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS789DXD at ENCODE; https://www.encodeproject.org/ENCBS789DXD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from HEK293 (ENCLB941IVE)

description:
https://www.encodeproject.org/experiments/ENCSR588MQZ/
***************
biological replicate number: 2
technical replicate number: 1,2
description: eGFP-ZNF626 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR588MQZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR300VIY, ENCSR274OGE, ENCSR429LAP, ENCSR688NWK, ENCSR342AGU, ENCSR157LMX, ENCSR354FNX, ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-01-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB941IVE
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF626 originated from HEK293

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS035MGE at ENCODE; https://www.encodeproject.org/ENCBS035MGE/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIA-PET from GM19240 (ENCLB364AXB)

description:
https://www.encodeproject.org/experiments/ENCSR980MHP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIA-PET in GM19240
experiment encode accession: ENCSR980MHP
assay title: ChIA-PET
encode release date: 2016-09-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB364AXB
size range: 200-500

source_name: Homo sapiens GM19240 cell line

extract_protocol:
general protocol: https://www.encodeproject.org/documents/a0261bf8-009c-4c0b-98ed-9bad4ec0e490/@@download/attachment/Snyder_lab_ChIA-PET_protocol_for_dataset_ENCSR727WCB.pdf
extraction method: see document

value: cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ACN; https://www.encodeproject.org/ENCDO000ACN/

value: ENCBS338PQB at ENCODE; https://www.encodeproject.org/ENCBS338PQB/

value: ENCODE dbxrefs Cellosaurus CVCL_9635; https://web.expasy.org/cellosaurus/CVCL_9635


title: ChIA-PET from GM12878 (ENCLB784HEF)

description:
https://www.encodeproject.org/experiments/ENCSR981FNA/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in GM12878
experiment encode accession: ENCSR981FNA
assay title: ChIA-PET
encode release date: 2016-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB784HEF
size range: 200-1500

source_name: Homo sapiens GM12878 cell line

extract_protocol:
general protocol: https://www.encodeproject.org/documents/e2f7736d-e5dd-4d73-859b-1e9141952a32/@@download/attachment/ENCODE%20Snyder%20lab%20ChIA-PET%20Protocol%20-%20030116.pdf
file format specification: https://www.encodeproject.org/documents/0d043bf5-e18d-4073-ba7c-80c044ffbe10/@@download/attachment/ENCODE3_Snyder_ChIA-PETCustomDemultiplexing.pdf
extraction method: see document

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: female

value: adult

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCBS502UVH at ENCODE; https://www.encodeproject.org/ENCBS502UVH/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; https://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from K562 (ENCLB231DNX)

description:
https://www.encodeproject.org/experiments/ENCSR033NQK/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF830 ChIP-seq on human K562
experiment encode accession: ENCSR033NQK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB231DNX
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS994WPS at ENCODE; https://www.encodeproject.org/ENCBS994WPS/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from right atrium auricular region (ENCLB301SWA)

description:
https://www.encodeproject.org/experiments/ENCSR066GBX/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human right atrium auricular region
experiment encode accession: ENCSR066GBX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR457JBY
encode release date: 2017-02-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB301SWA
size range: 450-650

source_name: Homo sapiens female adult (53 years) right atrium auricular region tissue

value: CTCF

value: right atrium auricular region

value: tissue

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: ENCBS822YKL at ENCODE; https://www.encodeproject.org/ENCBS822YKL/


title: CRISPRi RNA-seq from K562 (ENCLB183MQH)

description:
https://www.encodeproject.org/experiments/ENCSR942XXL/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting HMBOX1.
experiment encode accession: ENCSR942XXL
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB183MQH
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting HMBOX1

value: cell line

value: female

value: adult

value: Sherman Weissman, Yale

value: ENCBS436WCF at ENCODE; https://www.encodeproject.org/ENCBS436WCF/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from GM19239 (ENCLB359YFH)

description:
https://www.encodeproject.org/experiments/ENCSR952NXC/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIA-PET in GM19239
experiment encode accession: ENCSR952NXC
assay title: ChIA-PET
encode release date: 2016-09-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB359YFH
size range: 200-500

source_name: Homo sapiens GM19239 cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: male

value: unknown

value: Derived from ENCODE donor ENCDO000ACM; https://www.encodeproject.org/ENCDO000ACM/

value: ENCBS513JGI at ENCODE; https://www.encodeproject.org/ENCBS513JGI/

value: ENCODE dbxrefs Cellosaurus CVCL_9634; https://web.expasy.org/cellosaurus/CVCL_9634


title: CRISPRi RNA-seq from K562 (ENCLB346RLD)

description:
https://www.encodeproject.org/experiments/ENCSR911BML/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting ZC3H11A.
experiment encode accession: ENCSR911BML
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB346RLD
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting ZC3H11A

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS737NBR at ENCODE; https://www.encodeproject.org/ENCBS737NBR/


title: CRISPRi RNA-seq from K562 (ENCLB159BPG)

description:
https://www.encodeproject.org/experiments/ENCSR942XXL/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting HMBOX1.
experiment encode accession: ENCSR942XXL
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB159BPG
size range: >200

value: ENCBS386AVE at ENCODE; https://www.encodeproject.org/ENCBS386AVE/


title: CRISPRi RNA-seq from K562 (ENCLB834UOT)

description:
https://www.encodeproject.org/experiments/ENCSR911BML/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting ZC3H11A.
experiment encode accession: ENCSR911BML
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB834UOT
size range: >200

value: cell line

value: ENCBS455MJB at ENCODE; https://www.encodeproject.org/ENCBS455MJB/


title: siRNA RNA-seq from K562 (ENCLB690KUI)

description:
https://www.encodeproject.org/experiments/ENCSR071JWS/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting LMNA.
experiment encode accession: ENCSR071JWS
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR608CVU, ENCSR074DIJ
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB690KUI
size range: >200

value: LMNA

value: K562 cells treated with a siRNA knockdown against LMNA, used in RNA-seq experiments.

value: female

value: adult

value: ENCBS567EJP at ENCODE; https://www.encodeproject.org/ENCBS567EJP/


title: ChIA-PET from GM19239 (ENCLB764JMZ)

description:
https://www.encodeproject.org/experiments/ENCSR952NXC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIA-PET in GM19239
experiment encode accession: ENCSR952NXC
assay title: ChIA-PET
encode release date: 2016-09-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB764JMZ
size range: 200-500

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: male

value: Michael Snyder, Stanford

value: ENCBS657HMS at ENCODE; https://www.encodeproject.org/ENCBS657HMS/


title: ChIP-seq from K562 (ENCLB439NIJ)

description:
https://www.encodeproject.org/experiments/ENCSR028UIU/
***************
biological replicate number: 2
technical replicate number: 1
description: ATF3 ChIP-seq on human K562
experiment encode accession: ENCSR028UIU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG, ENCSR173USI
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB439NIJ
size range: 450-650

value: ENCBS320BUL at ENCODE; https://www.encodeproject.org/ENCBS320BUL/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from HT-1376 (ENCLB604VRJ)

description:
https://www.encodeproject.org/experiments/ENCSR933UZH/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human HT-1376 cells
experiment encode accession: ENCSR933UZH
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB604VRJ
size range: 450-650

source_name: Homo sapiens HT-1376 cell line

value: Bladder carcinoma

value: 58 year

value: Derived from ENCODE donor ENCDO867DLP; https://www.encodeproject.org/ENCDO867DLP/

value: ENCBS266UUE at ENCODE; https://www.encodeproject.org/ENCBS266UUE/

value: ENCODE dbxrefs Cellosaurus CVCL_1292; https://web.expasy.org/cellosaurus/CVCL_1292


title: CRISPRi RNA-seq from K562 (ENCLB121LCA)

description:
https://www.encodeproject.org/experiments/ENCSR905SEH/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting MITF.
experiment encode accession: ENCSR905SEH
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB121LCA
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting MITF

value: MITF

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS860BPC at ENCODE; https://www.encodeproject.org/ENCBS860BPC/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from GM12892 (ENCLB173LOB)

description:
https://www.encodeproject.org/experiments/ENCSR852EAX/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIA-PET in GM12892
experiment encode accession: ENCSR852EAX
assay title: ChIA-PET
encode release date: 2016-04-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB173LOB
size range: 200-500

source_name: Homo sapiens GM12892 cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment:Epstein-Barr Virus transformed

value: female

value: unknown

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000AAL; https://www.encodeproject.org/ENCDO000AAL/

value: ENCBS698HPL at ENCODE; https://www.encodeproject.org/ENCBS698HPL/

value: ENCODE dbxrefs Cellosaurus CVCL_9631; https://web.expasy.org/cellosaurus/CVCL_9631


title: ChIA-PET from HT-1376 (ENCLB986NHR)

description:
https://www.encodeproject.org/experiments/ENCSR933UZH/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human HT-1376 cells
experiment encode accession: ENCSR933UZH
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB986NHR
size range: 450-650

value: Bladder carcinoma

value: adult

value: 58 year

value: Derived from ENCODE donor ENCDO867DLP; https://www.encodeproject.org/ENCDO867DLP/

value: ENCBS956LPK at ENCODE; https://www.encodeproject.org/ENCBS956LPK/


title: ChIA-PET from NCI-H1437 (ENCLB036IAS)

description:
https://www.encodeproject.org/experiments/ENCSR833CMG/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human NCI-H1437 cells
experiment encode accession: ENCSR833CMG
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB036IAS
size range: 450-650

source_name: Homo sapiens NCI-H1437 cell line

value: cell line

value: male

value: Stage 1 Adenocarcinoma; non-small lung cancer

value: 60 year

value: Derived from ENCODE donor ENCDO817CJN; https://www.encodeproject.org/ENCDO817CJN/

value: ENCBS117IRE at ENCODE; https://www.encodeproject.org/ENCBS117IRE/

value: ENCODE dbxrefs Cellosaurus CVCL_1472; https://web.expasy.org/cellosaurus/CVCL_1472


title: CRISPRi RNA-seq from K562 (ENCLB308KEX)

description:
https://www.encodeproject.org/experiments/ENCSR905SEH/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting MITF.
experiment encode accession: ENCSR905SEH
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB308KEX
size range: >200

value: MITF

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS445DZU at ENCODE; https://www.encodeproject.org/ENCBS445DZU/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from GM12878 (ENCLB535GER)

description:
https://www.encodeproject.org/experiments/ENCSR981FNA/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in GM12878
experiment encode accession: ENCSR981FNA
assay title: ChIA-PET
encode release date: 2016-10-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB535GER
size range: 200-1500

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: adult

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCBS268UXF at ENCODE; https://www.encodeproject.org/ENCBS268UXF/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; https://web.expasy.org/cellosaurus/CVCL_7526


title: ChIA-PET from NCI-H1437 (ENCLB264BUW)

description:
https://www.encodeproject.org/experiments/ENCSR833CMG/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human NCI-H1437 cells
experiment encode accession: ENCSR833CMG
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB264BUW
size range: 450-650

value: cell line

value: male

value: Stage 1 Adenocarcinoma; non-small lung cancer

value: 60 year

value: Derived from ENCODE donor ENCDO817CJN; https://www.encodeproject.org/ENCDO817CJN/

value: ENCBS769XMO at ENCODE; https://www.encodeproject.org/ENCBS769XMO/


title: ChIA-PET from GM19238 (ENCLB281QVP)

description:
https://www.encodeproject.org/experiments/ENCSR823TEV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIA-PET in GM19238
experiment encode accession: ENCSR823TEV
assay title: ChIA-PET
encode release date: 2016-09-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB281QVP
size range: 200-500

source_name: Homo sapiens GM19238 cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: female

value: Derived from ENCODE donor ENCDO000ACL; https://www.encodeproject.org/ENCDO000ACL/

value: ENCBS594JOC at ENCODE; https://www.encodeproject.org/ENCBS594JOC/

value: ENCODE dbxrefs Cellosaurus CVCL_9633; https://web.expasy.org/cellosaurus/CVCL_9633


title: ChIA-PET from GM19238 (ENCLB764RCU)

description:
https://www.encodeproject.org/experiments/ENCSR823TEV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIA-PET in GM19238
experiment encode accession: ENCSR823TEV
assay title: ChIA-PET
encode release date: 2016-09-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB764RCU
size range: 200-500

value: unknown

value: ENCBS332FBI at ENCODE; https://www.encodeproject.org/ENCBS332FBI/


title: ChIA-PET from GM19240 (ENCLB975RTZ)

description:
https://www.encodeproject.org/experiments/ENCSR980MHP/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIA-PET in GM19240
experiment encode accession: ENCSR980MHP
assay title: ChIA-PET
encode release date: 2016-09-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB975RTZ
size range: 200-500

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ACN; https://www.encodeproject.org/ENCDO000ACN/

value: ENCBS760NLE at ENCODE; https://www.encodeproject.org/ENCBS760NLE/

value: ENCODE dbxrefs Cellosaurus CVCL_9635; https://web.expasy.org/cellosaurus/CVCL_9635


title: CRISPRi RNA-seq from K562 (ENCLB722GIB)

description:
https://www.encodeproject.org/experiments/ENCSR900AQL/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting KHSRP.
experiment encode accession: ENCSR900AQL
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB722GIB
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting KHSRP

value: KHSRP

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS215OFX at ENCODE; https://www.encodeproject.org/ENCBS215OFX/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: CRISPRi RNA-seq from K562 (ENCLB516DTC)

description:
https://www.encodeproject.org/experiments/ENCSR898UNK/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting ARID3A.
experiment encode accession: ENCSR898UNK
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB516DTC
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting ARID3A

value: female

value: ENCBS292OQL at ENCODE; https://www.encodeproject.org/ENCBS292OQL/


title: CRISPRi RNA-seq from K562 (ENCLB380HFU)

description:
https://www.encodeproject.org/experiments/ENCSR900AQL/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting KHSRP.
experiment encode accession: ENCSR900AQL
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB380HFU
size range: >200

value: ENCBS137COY at ENCODE; https://www.encodeproject.org/ENCBS137COY/


title: CRISPRi RNA-seq from K562 (ENCLB701KNN)

description:
https://www.encodeproject.org/experiments/ENCSR898UNK/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting ARID3A.
experiment encode accession: ENCSR898UNK
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB701KNN
size range: >200

value: ENCBS540KJO at ENCODE; https://www.encodeproject.org/ENCBS540KJO/


title: ChIA-PET from GM19240 (ENCLB290ZDS)

description:
https://www.encodeproject.org/experiments/ENCSR782XOF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIA-PET in GM19240
experiment encode accession: ENCSR782XOF
assay title: ChIA-PET
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB290ZDS
size range: 200-500

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: unknown

value: Michael Snyder, Stanford


title: CRISPRi RNA-seq from K562 (ENCLB442PKZ)

description:
https://www.encodeproject.org/experiments/ENCSR862UHT/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting DLX1.
experiment encode accession: ENCSR862UHT
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB442PKZ
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting DLX1

value: ENCBS050OIR at ENCODE; https://www.encodeproject.org/ENCBS050OIR/


title: CRISPRi RNA-seq from K562 (ENCLB201URL)

description:
https://www.encodeproject.org/experiments/ENCSR850LOZ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting GATA1.
experiment encode accession: ENCSR850LOZ
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB201URL
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting GATA1

value: ENCBS843HZD at ENCODE; https://www.encodeproject.org/ENCBS843HZD/


title: ChIA-PET from MSiPS (ENCLB987NVI)

description:
https://www.encodeproject.org/experiments/ENCSR778FXH/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human MSiPS cells
experiment encode accession: ENCSR778FXH
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB987NVI
size range: 450-650

source_name: Homo sapiens MSiPS cell line

value: MSiPS

value: cell line

value: Induced pluripotent stem cells derived from PBMC (peripheral blood mononuclear cells)

value: male

value: Type 2 diabetes

value: 60 year

value: Derived from ENCODE donor ENCDO802YGT; https://www.encodeproject.org/ENCDO802YGT/

value: ENCBS328OGH at ENCODE; https://www.encodeproject.org/ENCBS328OGH/


title: ChIA-PET from MSiPS (ENCLB183DUO)

description:
https://www.encodeproject.org/experiments/ENCSR778FXH/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human MSiPS cells
experiment encode accession: ENCSR778FXH
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB183DUO
size range: 450-650

value: adult

value: ENCBS162TUX at ENCODE; https://www.encodeproject.org/ENCBS162TUX/


title: ChIA-PET from GM19240 (ENCLB643WIV)

description:
https://www.encodeproject.org/experiments/ENCSR782XOF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIA-PET in GM19240
experiment encode accession: ENCSR782XOF
assay title: ChIA-PET
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB643WIV
size range: 200-500

value: female

value: Derived from ENCODE donor ENCDO000ACN; https://www.encodeproject.org/ENCDO000ACN/

value: ENCBS338PQB at ENCODE; https://www.encodeproject.org/ENCBS338PQB/

value: ENCODE dbxrefs Cellosaurus CVCL_9635; https://web.expasy.org/cellosaurus/CVCL_9635


title: CRISPRi RNA-seq from K562 (ENCLB458VGC)

description:
https://www.encodeproject.org/experiments/ENCSR819PCU/
***************
biological replicate number: 3
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting SETDB1.
experiment encode accession: ENCSR819PCU
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB458VGC
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting SETDB1

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS820CNC at ENCODE; https://www.encodeproject.org/ENCBS820CNC/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from GM19239 (ENCLB385AVV)

description:
https://www.encodeproject.org/experiments/ENCSR761FUE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIA-PET in GM19239
experiment encode accession: ENCSR761FUE
assay title: ChIA-PET
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB385AVV
size range: 200-500

value: cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: male

value: unknown

value: Derived from ENCODE donor ENCDO000ACM; https://www.encodeproject.org/ENCDO000ACM/

value: ENCBS657HMS at ENCODE; https://www.encodeproject.org/ENCBS657HMS/

value: ENCODE dbxrefs Cellosaurus CVCL_9634; https://web.expasy.org/cellosaurus/CVCL_9634


title: CRISPRi RNA-seq from K562 (ENCLB535FNQ)

description:
https://www.encodeproject.org/experiments/ENCSR850LOZ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting GATA1.
experiment encode accession: ENCSR850LOZ
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB535FNQ
size range: >200

value: female

value: adult

value: Sherman Weissman, Yale

value: ENCBS455WWI at ENCODE; https://www.encodeproject.org/ENCBS455WWI/


title: ChIA-PET from GM12878 (ENCLB440HFB)

description:
https://www.encodeproject.org/experiments/ENCSR752QCX/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in GM12878
experiment encode accession: ENCSR752QCX
assay title: ChIA-PET
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB440HFB
size range: 200-500

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCBS492CVI at ENCODE; https://www.encodeproject.org/ENCBS492CVI/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; https://web.expasy.org/cellosaurus/CVCL_7526


title: ChIA-PET from GM19239 (ENCLB253RQS)

description:
https://www.encodeproject.org/experiments/ENCSR761FUE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIA-PET in GM19239
experiment encode accession: ENCSR761FUE
assay title: ChIA-PET
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB253RQS
size range: 200-500

value: Michael Snyder, Stanford

value: ENCBS513JGI at ENCODE; https://www.encodeproject.org/ENCBS513JGI/


title: CRISPRi RNA-seq from K562 (ENCLB923LKL)

description:
https://www.encodeproject.org/experiments/ENCSR862UHT/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting DLX1.
experiment encode accession: ENCSR862UHT
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB923LKL
size range: >200

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS221RMF at ENCODE; https://www.encodeproject.org/ENCBS221RMF/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from fibroblast (ENCLB458GRP)

description:
https://www.encodeproject.org/experiments/ENCSR732QOH/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human MSFIB cells (fibroblast from skin from donor Michael Snyder)
experiment encode accession: ENCSR732QOH
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB458GRP
size range: 450-650

source_name: Homo sapiens male adult (60 years) fibroblast primary cell

value: fibroblast

value: primary cell

value: Shortened as 'MSFIB', this biosample is a fibroblast from skin, from donor Michael Snyder

value: male

value: Type 2 diabetes

value: 60 year

value: Derived from ENCODE donor ENCDO802YGT; https://www.encodeproject.org/ENCDO802YGT/

value: ENCBS104LEJ at ENCODE; https://www.encodeproject.org/ENCBS104LEJ/


title: CRISPRi RNA-seq from K562 (ENCLB842UAA)

description:
https://www.encodeproject.org/experiments/ENCSR810RIC/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting HOXB9.
experiment encode accession: ENCSR810RIC
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB842UAA
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting HOXB9

value: female

value: adult

value: Sherman Weissman, Yale

value: ENCBS424FEP at ENCODE; https://www.encodeproject.org/ENCBS424FEP/


title: CRISPRi RNA-seq from K562 (ENCLB402DUA)

description:
https://www.encodeproject.org/experiments/ENCSR810RIC/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting HOXB9.
experiment encode accession: ENCSR810RIC
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB402DUA
size range: >200

value: cell line

value: chronic myelogenous leukemia (CML)

value: ENCBS728HGG at ENCODE; https://www.encodeproject.org/ENCBS728HGG/


title: ChIA-PET from DU 145 (ENCLB812TEF)

description:
https://www.encodeproject.org/experiments/ENCSR672RHL/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human DU 145 cells
experiment encode accession: ENCSR672RHL
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB812TEF
size range: 450-650

source_name: Homo sapiens DU 145 cell line

value: Prostate carcinoma

value: 69 year

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO842XEO; https://www.encodeproject.org/ENCDO842XEO/

value: ENCBS721QHV at ENCODE; https://www.encodeproject.org/ENCBS721QHV/

value: ENCODE dbxrefs Cellosaurus CVCL_0105; https://web.expasy.org/cellosaurus/CVCL_0105


title: siRNA RNA-seq from MCF-7 (ENCLB966XXD)

description:
https://www.encodeproject.org/experiments/ENCSR783OQM/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on CB-24 cells treated with siRNA targeting a non-specific control siRNA.
experiment encode accession: ENCSR783OQM
assay title: siRNA RNA-seq
assembly: hg19, GRCh38
encode release date: 2017-07-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB966XXD
size range: >200

source_name: Homo sapiens MCF-7 cell line expressing RNAi targeting Non-specific target control

value: Control

value: MCF-7 cells treated with a siRNA knockdown against a non-specific target control, used in RNA-seq experiments.

value: breast cancer (adenocarcinoma)

value: Peggy Farnham, USC

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCBS963BLD at ENCODE; https://www.encodeproject.org/ENCBS963BLD/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; https://web.expasy.org/cellosaurus/CVCL_0031


title: CRISPRi RNA-seq from K562 (ENCLB699BNS)

description:
https://www.encodeproject.org/experiments/ENCSR808HQN/
***************
biological replicate number: 3
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting NR2C2.
experiment encode accession: ENCSR808HQN
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB699BNS
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting NR2C2

value: female

value: adult

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS864JNT at ENCODE; https://www.encodeproject.org/ENCBS864JNT/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from DU 145 (ENCLB678KEV)

description:
https://www.encodeproject.org/experiments/ENCSR672RHL/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human DU 145 cells
experiment encode accession: ENCSR672RHL
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB678KEV
size range: 450-650

value: cell line

value: male

value: Prostate carcinoma

value: 69 year

value: Michael Snyder, Stanford

value: ENCBS077VSE at ENCODE; https://www.encodeproject.org/ENCBS077VSE/


title: CRISPRi RNA-seq from K562 (ENCLB767DGY)

description:
https://www.encodeproject.org/experiments/ENCSR808HQN/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting NR2C2.
experiment encode accession: ENCSR808HQN
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB767DGY
size range: >200

value: chronic myelogenous leukemia (CML)

value: Sherman Weissman, Yale

value: ENCBS529CYT at ENCODE; https://www.encodeproject.org/ENCBS529CYT/


title: ChIA-PET from pulmonary artery endothelial cell (ENCLB097QIV)

description:
https://www.encodeproject.org/experiments/ENCSR668RDP/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human pulmonary artery endothelial cell
experiment encode accession: ENCSR668RDP
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB097QIV
size range: 450-650

source_name: Homo sapiens pulmonary artery endothelial primary cell

value: pulmonary artery endothelial cell

value: primary cell

value: not collected

value: unknown

value: Derived from ENCODE donor ENCDO726XUY; https://www.encodeproject.org/ENCDO726XUY/

value: ENCBS383ZZQ at ENCODE; https://www.encodeproject.org/ENCBS383ZZQ/


title: ChIA-PET from SU-DHL-4 (ENCLB954LTH)

description:
https://www.encodeproject.org/experiments/ENCSR658RQQ/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human SU-DHL-4 cells
experiment encode accession: ENCSR658RQQ
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB954LTH
size range: 450-650

source_name: Homo sapiens SU-DHL-4 cell line

value: Diffuse Histiocytic Lymphoma

value: adult

value: 38 year

value: Derived from ENCODE donor ENCDO462KAI; https://www.encodeproject.org/ENCDO462KAI/

value: ENCBS265MKB at ENCODE; https://www.encodeproject.org/ENCBS265MKB/

value: ENCODE dbxrefs Cellosaurus CVCL_0539; https://web.expasy.org/cellosaurus/CVCL_0539


title: CRISPRi RNA-seq from K562 (ENCLB675YYX)

description:
https://www.encodeproject.org/experiments/ENCSR800PWS/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting TBL1XR1.
experiment encode accession: ENCSR800PWS
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB675YYX
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting TBL1XR1

value: cell line

value: female

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS512ZCG at ENCODE; https://www.encodeproject.org/ENCBS512ZCG/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: CRISPRi RNA-seq from K562 (ENCLB801KAQ)

description:
https://www.encodeproject.org/experiments/ENCSR800PWS/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting TBL1XR1.
experiment encode accession: ENCSR800PWS
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB801KAQ
size range: >200

value: chronic myelogenous leukemia (CML)

value: Sherman Weissman, Yale

value: ENCBS915PIR at ENCODE; https://www.encodeproject.org/ENCBS915PIR/


title: siRNA RNA-seq from MCF-7 (ENCLB471URE)

description:
https://www.encodeproject.org/experiments/ENCSR783OQM/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on CB-24 cells treated with siRNA targeting a non-specific control siRNA.
experiment encode accession: ENCSR783OQM
assay title: siRNA RNA-seq
assembly: hg19, GRCh38
encode release date: 2017-07-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB471URE
size range: >200

value: Control

value: MCF-7 cells treated with a siRNA knockdown against a non-specific target control, used in RNA-seq experiments.

value: breast cancer (adenocarcinoma)

value: 69 year

value: Peggy Farnham, USC

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCBS312USZ at ENCODE; https://www.encodeproject.org/ENCBS312USZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; https://web.expasy.org/cellosaurus/CVCL_0031


title: CRISPRi RNA-seq from K562 (ENCLB903WRH)

description:
https://www.encodeproject.org/experiments/ENCSR808HQN/
***************
biological replicate number: 4
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting NR2C2.
experiment encode accession: ENCSR808HQN
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB903WRH
size range: >200

value: cell line

value: adult

value: Michael Snyder, Stanford

value: ENCBS495GAT at ENCODE; https://www.encodeproject.org/ENCBS495GAT/


title: ChIA-PET from SU-DHL-4 (ENCLB881DIJ)

description:
https://www.encodeproject.org/experiments/ENCSR658RQQ/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human SU-DHL-4 cells
experiment encode accession: ENCSR658RQQ
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB881DIJ
size range: 450-650

value: male

value: Diffuse Histiocytic Lymphoma

value: 38 year

value: Derived from ENCODE donor ENCDO462KAI; https://www.encodeproject.org/ENCDO462KAI/

value: ENCBS980NLV at ENCODE; https://www.encodeproject.org/ENCBS980NLV/

value: ENCODE dbxrefs Cellosaurus CVCL_0539; https://web.expasy.org/cellosaurus/CVCL_0539


title: CRISPRi RNA-seq from K562 (ENCLB437NLV)

description:
https://www.encodeproject.org/experiments/ENCSR819PCU/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting SETDB1.
experiment encode accession: ENCSR819PCU
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB437NLV
size range: >200

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS693JYR at ENCODE; https://www.encodeproject.org/ENCBS693JYR/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from GM12891 (ENCLB280QBF)

description:
https://www.encodeproject.org/experiments/ENCSR600ACR/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIA-PET in GM12891
experiment encode accession: ENCSR600ACR
assay title: ChIA-PET
encode release date: 2016-04-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB280QBF
size range: 200-500

source_name: Homo sapiens GM12891 cell line

value: cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment:Epstein-Barr Virus transformed

value: unknown

value: Derived from ENCODE donor ENCDO000ACA; https://www.encodeproject.org/ENCDO000ACA/

value: ENCBS270GPL at ENCODE; https://www.encodeproject.org/ENCBS270GPL/

value: ENCODE dbxrefs Cellosaurus CVCL_9630; https://web.expasy.org/cellosaurus/CVCL_9630


title: ChIA-PET from GM12878 (ENCLB962POV)

description:
https://www.encodeproject.org/experiments/ENCSR752QCX/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in GM12878
experiment encode accession: ENCSR752QCX
assay title: ChIA-PET
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB962POV
size range: 200-500

source_name: Homo sapiens GM12878 cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: adult

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCBS685XZU at ENCODE; https://www.encodeproject.org/ENCBS685XZU/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; https://web.expasy.org/cellosaurus/CVCL_7526


title: siRNA RNA-seq from MCF-7 (ENCLB184NGW)

description:
https://www.encodeproject.org/experiments/ENCSR783OQM/
***************
biological replicate number: 3
technical replicate number: 1
description: RNA-seq on CB-24 cells treated with siRNA targeting a non-specific control siRNA.
experiment encode accession: ENCSR783OQM
assay title: siRNA RNA-seq
assembly: hg19, GRCh38
encode release date: 2017-07-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB184NGW
size range: >200

value: Control

value: MCF-7 cells treated with a siRNA knockdown against a non-specific target control, used in RNA-seq experiments.

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: Peggy Farnham, USC

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCBS778AGF at ENCODE; https://www.encodeproject.org/ENCBS778AGF/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; https://web.expasy.org/cellosaurus/CVCL_0031


title: ChIA-PET from neural cell (ENCLB810QPH)

description:
https://www.encodeproject.org/experiments/ENCSR587DSF/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human neural cell cells
experiment encode accession: ENCSR587DSF
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB810QPH
size range: 450-650

source_name: Homo sapiens male embryo neural in vitro differentiated cells originated from H1-hESC

value: neural cell

value: in vitro differentiated cells

value: male

value: healthy

value: embryonic

value: unknown

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/

value: ENCBS278HPW at ENCODE; https://www.encodeproject.org/ENCBS278HPW/


title: CRISPRi RNA-seq from K562 (ENCLB409FZY)

description:
https://www.encodeproject.org/experiments/ENCSR781XJD/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting ZNF143.
experiment encode accession: ENCSR781XJD
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB409FZY
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting ZNF143

value: cell line

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS932XMW at ENCODE; https://www.encodeproject.org/ENCBS932XMW/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: CRISPRi RNA-seq from K562 (ENCLB742CJL)

description:
https://www.encodeproject.org/experiments/ENCSR781XJD/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting ZNF143.
experiment encode accession: ENCSR781XJD
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB742CJL
size range: >200

value: female

value: ENCBS072VYP at ENCODE; https://www.encodeproject.org/ENCBS072VYP/


title: CRISPRi RNA-seq from K562 (ENCLB171KNC)

description:
https://www.encodeproject.org/experiments/ENCSR773VKE/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting FOXK2.
experiment encode accession: ENCSR773VKE
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB171KNC
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting FOXK2

value: ENCBS374CJP at ENCODE; https://www.encodeproject.org/ENCBS374CJP/


title: ChIA-PET from neural cell (ENCLB656LCO)

description:
https://www.encodeproject.org/experiments/ENCSR587DSF/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human neural cell cells
experiment encode accession: ENCSR587DSF
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB656LCO
size range: 450-650

value: neural cell

value: in vitro differentiated cells

value: male

value: Michael Snyder, Stanford

value: ENCBS858KUM at ENCODE; https://www.encodeproject.org/ENCBS858KUM/


title: CRISPRi RNA-seq from K562 (ENCLB933SHW)

description:
https://www.encodeproject.org/experiments/ENCSR773VKE/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting FOXK2.
experiment encode accession: ENCSR773VKE
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB933SHW
size range: >200

value: ENCBS840OGS at ENCODE; https://www.encodeproject.org/ENCBS840OGS/


title: ChIA-PET from GM19238 (ENCLB162BWH)

description:
https://www.encodeproject.org/experiments/ENCSR527RXH/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in GM19238
experiment encode accession: ENCSR527RXH
assay title: ChIA-PET
encode release date: 2016-10-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB162BWH
size range: 200-500

source_name: Homo sapiens GM19238 cell line

value: cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: unknown

value: Derived from ENCODE donor ENCDO000ACL; https://www.encodeproject.org/ENCDO000ACL/

value: ENCBS594JOC at ENCODE; https://www.encodeproject.org/ENCBS594JOC/

value: ENCODE dbxrefs Cellosaurus CVCL_9633; https://web.expasy.org/cellosaurus/CVCL_9633


title: CRISPRi RNA-seq from K562 (ENCLB709IGQ)

description:
https://www.encodeproject.org/experiments/ENCSR761AQZ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference for a non-specific target (batch D control).
experiment encode accession: ENCSR761AQZ
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB709IGQ
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting Non-specific target control

value: Control

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS347KXG at ENCODE; https://www.encodeproject.org/ENCBS347KXG/


title: ChIA-PET from GM19238 (ENCLB433FVF)

description:
https://www.encodeproject.org/experiments/ENCSR527RXH/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in GM19238
experiment encode accession: ENCSR527RXH
assay title: ChIA-PET
encode release date: 2016-10-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB433FVF
size range: 200-500

value: female

value: ENCBS332FBI at ENCODE; https://www.encodeproject.org/ENCBS332FBI/


title: ChIA-PET from GM19239 (ENCLB295YTI)

description:
https://www.encodeproject.org/experiments/ENCSR479MTN/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in GM19239
experiment encode accession: ENCSR479MTN
assay title: ChIA-PET
encode release date: 2016-10-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB295YTI
size range: 200-500

source_name: Homo sapiens GM19239 cell line

value: male

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ACM; https://www.encodeproject.org/ENCDO000ACM/

value: ENCBS657HMS at ENCODE; https://www.encodeproject.org/ENCBS657HMS/

value: ENCODE dbxrefs Cellosaurus CVCL_9634; https://web.expasy.org/cellosaurus/CVCL_9634


title: ChIA-PET from GM19239 (ENCLB709VQO)

description:
https://www.encodeproject.org/experiments/ENCSR479MTN/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in GM19239
experiment encode accession: ENCSR479MTN
assay title: ChIA-PET
encode release date: 2016-10-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB709VQO
size range: 200-500

value: cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: unknown

value: ENCBS513JGI at ENCODE; https://www.encodeproject.org/ENCBS513JGI/


title: CRISPRi RNA-seq from K562 (ENCLB934HEE)

description:
https://www.encodeproject.org/experiments/ENCSR761AQZ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference for a non-specific target (batch D control).
experiment encode accession: ENCSR761AQZ
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB934HEE
size range: >200

value: Control

value: chronic myelogenous leukemia (CML)

value: ENCBS301LXH at ENCODE; https://www.encodeproject.org/ENCBS301LXH/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from H9 (ENCLB959KYX)

description:
https://www.encodeproject.org/experiments/ENCSR478BMT/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human endodermal cell cells
experiment encode accession: ENCSR478BMT
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB959KYX
size range: 450-650

source_name: Homo sapiens H9 cell line

value: healthy

value: embryonic

value: 5 day

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCBS410BMR at ENCODE; https://www.encodeproject.org/ENCBS410BMR/


title: ChIA-PET from H9 (ENCLB932YBE)

description:
https://www.encodeproject.org/experiments/ENCSR478BMT/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human endodermal cell cells
experiment encode accession: ENCSR478BMT
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB932YBE
size range: 450-650

value: female

value: Michael Snyder, Stanford

value: ENCBS156LDX at ENCODE; https://www.encodeproject.org/ENCBS156LDX/


title: ChIA-PET from MSLCL (ENCLB034HNM)

description:
https://www.encodeproject.org/experiments/ENCSR452NHL/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human MSLCL cells (B-cell-derived lymphoblastoid cell line from donor Michael Snyder)
experiment encode accession: ENCSR452NHL
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB034HNM
size range: 450-650

source_name: Homo sapiens MSLCL cell line

value: MSLCL

value: Shortened as 'MSLCL', this biosample is a B-cell-derived lymphoblastoid cell line from donor Michael Snyder

value: male

value: Type 2 diabetes

value: adult

value: 60 year

value: Derived from ENCODE donor ENCDO802YGT; https://www.encodeproject.org/ENCDO802YGT/

value: ENCBS885UHF at ENCODE; https://www.encodeproject.org/ENCBS885UHF/


title: CRISPRi RNA-seq from K562 (ENCLB897NOO)

description:
https://www.encodeproject.org/experiments/ENCSR733TFF/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting MEIS2.
experiment encode accession: ENCSR733TFF
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB897NOO
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting MEIS2

value: cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS961PAE at ENCODE; https://www.encodeproject.org/ENCBS961PAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: CRISPRi RNA-seq from K562 (ENCLB811FCJ)

description:
https://www.encodeproject.org/experiments/ENCSR734VBC/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting HSF1.
experiment encode accession: ENCSR734VBC
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB811FCJ
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting HSF1

value: female

value: ENCBS413NDY at ENCODE; https://www.encodeproject.org/ENCBS413NDY/


title: CRISPRi RNA-seq from K562 (ENCLB924MSQ)

description:
https://www.encodeproject.org/experiments/ENCSR734VBC/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting HSF1.
experiment encode accession: ENCSR734VBC
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB924MSQ
size range: >200

value: ENCBS261ARZ at ENCODE; https://www.encodeproject.org/ENCBS261ARZ/


title: ChIA-PET from HT-1197 (ENCLB896KBZ)

description:
https://www.encodeproject.org/experiments/ENCSR386KHY/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human HT-1197 cells
experiment encode accession: ENCSR386KHY
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB896KBZ
size range: 450-650

source_name: Homo sapiens HT-1197 cell line

value: Bladder carcinoma

value: 44 year

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO298ZCC; https://www.encodeproject.org/ENCDO298ZCC/

value: ENCBS772EGW at ENCODE; https://www.encodeproject.org/ENCBS772EGW/

value: ENCODE dbxrefs Cellosaurus CVCL_1291; https://web.expasy.org/cellosaurus/CVCL_1291


title: ChIA-PET from KU-19-19 (ENCLB882GHB)

description:
https://www.encodeproject.org/experiments/ENCSR404HWQ/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human KU-19-19 cells
experiment encode accession: ENCSR404HWQ
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB882GHB
size range: 450-650

source_name: Homo sapiens KU-19-19 cell line

value: male

value: adult

value: 76 year

value: Derived from ENCODE donor ENCDO597QMR; https://www.encodeproject.org/ENCDO597QMR/

value: ENCBS304FRD at ENCODE; https://www.encodeproject.org/ENCBS304FRD/

value: ENCODE dbxrefs Cellosaurus CVCL_1344; https://web.expasy.org/cellosaurus/CVCL_1344


title: ChIA-PET from KU-19-19 (ENCLB746BAM)

description:
https://www.encodeproject.org/experiments/ENCSR404HWQ/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human KU-19-19 cells
experiment encode accession: ENCSR404HWQ
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB746BAM
size range: 450-650

value: cell line

value: ENCBS497ZHB at ENCODE; https://www.encodeproject.org/ENCBS497ZHB/


title: CRISPRi RNA-seq from K562 (ENCLB790CBP)

description:
https://www.encodeproject.org/experiments/ENCSR733TFF/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting MEIS2.
experiment encode accession: ENCSR733TFF
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB790CBP
size range: >200

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS972HZK at ENCODE; https://www.encodeproject.org/ENCBS972HZK/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from fibroblast (ENCLB147AJZ)

description:
https://www.encodeproject.org/experiments/ENCSR732QOH/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human MSFIB cells (fibroblast from skin from donor Michael Snyder)
experiment encode accession: ENCSR732QOH
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB147AJZ
size range: 450-650

source_name: Homo sapiens male adult (60 years) fibroblast primary cell

value: fibroblast

value: primary cell

value: Shortened as 'MSFIB', this biosample is a fibroblast from skin, from donor Michael Snyder

value: Type 2 diabetes

value: 60 year

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO802YGT; https://www.encodeproject.org/ENCDO802YGT/

value: ENCBS806MDQ at ENCODE; https://www.encodeproject.org/ENCBS806MDQ/


title: CRISPRi RNA-seq from K562 (ENCLB422DNU)

description:
https://www.encodeproject.org/experiments/ENCSR731FEO/
***************
biological replicate number: 4
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting SMAD5.
experiment encode accession: ENCSR731FEO
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB422DNU
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting SMAD5

value: cell line

value: adult

value: ENCBS739EAW at ENCODE; https://www.encodeproject.org/ENCBS739EAW/


title: ChIA-PET from HT-1197 (ENCLB634DLH)

description:
https://www.encodeproject.org/experiments/ENCSR386KHY/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human HT-1197 cells
experiment encode accession: ENCSR386KHY
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB634DLH
size range: 450-650

value: male

value: Bladder carcinoma

value: 44 year

value: Derived from ENCODE donor ENCDO298ZCC; https://www.encodeproject.org/ENCDO298ZCC/

value: ENCBS699THW at ENCODE; https://www.encodeproject.org/ENCBS699THW/

value: ENCODE dbxrefs Cellosaurus CVCL_1291; https://web.expasy.org/cellosaurus/CVCL_1291


title: CRISPRi RNA-seq from K562 (ENCLB926NEL)

description:
https://www.encodeproject.org/experiments/ENCSR731FEO/
***************
biological replicate number: 3
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting SMAD5.
experiment encode accession: ENCSR731FEO
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB926NEL
size range: >200

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS673YEZ at ENCODE; https://www.encodeproject.org/ENCBS673YEZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: CRISPRi RNA-seq from K562 (ENCLB854TJZ)

description:
https://www.encodeproject.org/experiments/ENCSR733ROU/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting MAF1.
experiment encode accession: ENCSR733ROU
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB854TJZ
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting MAF1

value: Sherman Weissman, Yale

value: ENCBS279WWG at ENCODE; https://www.encodeproject.org/ENCBS279WWG/


title: ChIA-PET from hepatocyte (ENCLB292ISX)

description:
https://www.encodeproject.org/experiments/ENCSR381DCY/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human LX cells (fetal hepatocyte cells derived from H9 stem cell)
experiment encode accession: ENCSR381DCY
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB292ISX
size range: 450-650

source_name: Homo sapiens female embryo (5 days) hepatocyte in vitro differentiated cells originated from H9

value: hepatocyte

value: in vitro differentiated cells

value: Fetal hepatocyte derived from H9 stem cell

value: healthy

value: embryonic

value: 5 day

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCBS491SXW at ENCODE; https://www.encodeproject.org/ENCBS491SXW/


title: CRISPRi RNA-seq from K562 (ENCLB235CMC)

description:
https://www.encodeproject.org/experiments/ENCSR733ROU/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting MAF1.
experiment encode accession: ENCSR733ROU
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB235CMC
size range: >200

value: cell line

value: female

value: adult

value: ENCBS666OHK at ENCODE; https://www.encodeproject.org/ENCBS666OHK/


title: CRISPRi RNA-seq from K562 (ENCLB197MBM)

description:
https://www.encodeproject.org/experiments/ENCSR731XIE/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting TARDBP.
experiment encode accession: ENCSR731XIE
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB197MBM
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting TARDBP

value: TARDBP

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS055JWH at ENCODE; https://www.encodeproject.org/ENCBS055JWH/


title: CRISPRi RNA-seq from K562 (ENCLB343SJG)

description:
https://www.encodeproject.org/experiments/ENCSR731XIE/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting TARDBP.
experiment encode accession: ENCSR731XIE
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB343SJG
size range: >200

value: Sherman Weissman, Yale

value: ENCBS559LFG at ENCODE; https://www.encodeproject.org/ENCBS559LFG/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from MSLCL (ENCLB463BOF)

description:
https://www.encodeproject.org/experiments/ENCSR452NHL/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human MSLCL cells (B-cell-derived lymphoblastoid cell line from donor Michael Snyder)
experiment encode accession: ENCSR452NHL
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB463BOF
size range: 450-650

value: MSLCL

value: Shortened as 'MSLCL', this biosample is a B-cell-derived lymphoblastoid cell line from donor Michael Snyder

value: male

value: Type 2 diabetes

value: 60 year

value: Derived from ENCODE donor ENCDO802YGT; https://www.encodeproject.org/ENCDO802YGT/

value: ENCBS999WLB at ENCODE; https://www.encodeproject.org/ENCBS999WLB/


title: ChIA-PET from GM19238 (ENCLB934VFL)

description:
https://www.encodeproject.org/experiments/ENCSR380UPB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIA-PET in GM19238
experiment encode accession: ENCSR380UPB
assay title: ChIA-PET
encode release date: 2016-12-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB934VFL
size range: 200-500

value: cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: female

value: unknown

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ACL; https://www.encodeproject.org/ENCDO000ACL/

value: ENCBS594JOC at ENCODE; https://www.encodeproject.org/ENCBS594JOC/

value: ENCODE dbxrefs Cellosaurus CVCL_9633; https://web.expasy.org/cellosaurus/CVCL_9633


title: ChIA-PET from Jurkat clone E61 (ENCLB152YMN)

description:
https://www.encodeproject.org/experiments/ENCSR361AYD/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human Jurkat clone E61 cells
experiment encode accession: ENCSR361AYD
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB152YMN
size range: 450-650

source_name: Homo sapiens Jurkat clone E61 cell line

value: Jurkat clone E61

value: acute T cell leukemia

value: child

value: 14 year

value: Derived from ENCODE donor ENCDO000AAY; https://www.encodeproject.org/ENCDO000AAY/

value: ENCBS732UVO at ENCODE; https://www.encodeproject.org/ENCBS732UVO/

value: ENCODE dbxrefs Cellosaurus CVCL_0367; https://web.expasy.org/cellosaurus/CVCL_0367


title: CRISPRi RNA-seq from K562 (ENCLB417OFZ)

description:
https://www.encodeproject.org/experiments/ENCSR715EDZ/
***************
biological replicate number: 3
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting SP2.
experiment encode accession: ENCSR715EDZ
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB417OFZ
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting SP2

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS346IIC at ENCODE; https://www.encodeproject.org/ENCBS346IIC/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: CRISPRi RNA-seq from K562 (ENCLB581CFR)

description:
https://www.encodeproject.org/experiments/ENCSR715EDZ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting SP2.
experiment encode accession: ENCSR715EDZ
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB581CFR
size range: >200

value: cell line

value: female

value: Sherman Weissman, Yale

value: ENCBS862BYE at ENCODE; https://www.encodeproject.org/ENCBS862BYE/


title: ChIA-PET from Jurkat clone E61 (ENCLB521KSK)

description:
https://www.encodeproject.org/experiments/ENCSR361AYD/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human Jurkat clone E61 cells
experiment encode accession: ENCSR361AYD
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB521KSK
size range: 450-650

value: Jurkat clone E61

value: male

value: Michael Snyder, Stanford

value: ENCBS606GXJ at ENCODE; https://www.encodeproject.org/ENCBS606GXJ/


title: CRISPRi RNA-seq from K562 (ENCLB865EMW)

description:
https://www.encodeproject.org/experiments/ENCSR715EDZ/
***************
biological replicate number: 4
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting SP2.
experiment encode accession: ENCSR715EDZ
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB865EMW
size range: >200

value: ENCBS886OYR at ENCODE; https://www.encodeproject.org/ENCBS886OYR/


title: ChIA-PET from K562 (ENCLB620YVM)

description:
https://www.encodeproject.org/experiments/ENCSR338WUS/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human K562 cells
experiment encode accession: ENCSR338WUS
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB620YVM
size range: 450-650

source_name: Homo sapiens K562 cell line

value: ENCBS862HGJ at ENCODE; https://www.encodeproject.org/ENCBS862HGJ/


title: CRISPRi RNA-seq from K562 (ENCLB416ISG)

description:
https://www.encodeproject.org/experiments/ENCSR713AEC/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting HINFP.
experiment encode accession: ENCSR713AEC
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB416ISG
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting HINFP

value: HINFP

value: ENCBS533QWA at ENCODE; https://www.encodeproject.org/ENCBS533QWA/


title: ChIA-PET from GM19239 (ENCLB953ADS)

description:
https://www.encodeproject.org/experiments/ENCSR332ZHA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIA-PET in GM19239
experiment encode accession: ENCSR332ZHA
assay title: ChIA-PET
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB953ADS
size range: 200-500

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: unknown

value: Derived from ENCODE donor ENCDO000ACM; https://www.encodeproject.org/ENCDO000ACM/

value: ENCBS657HMS at ENCODE; https://www.encodeproject.org/ENCBS657HMS/

value: ENCODE dbxrefs Cellosaurus CVCL_9634; https://web.expasy.org/cellosaurus/CVCL_9634


title: ChIA-PET from GM19239 (ENCLB998SIT)

description:
https://www.encodeproject.org/experiments/ENCSR332ZHA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIA-PET in GM19239
experiment encode accession: ENCSR332ZHA
assay title: ChIA-PET
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB998SIT
size range: 200-500

value: cell line

value: ENCBS513JGI at ENCODE; https://www.encodeproject.org/ENCBS513JGI/


title: CRISPRi RNA-seq from K562 (ENCLB895GMH)

description:
https://www.encodeproject.org/experiments/ENCSR701TVL/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting FOXM1.
experiment encode accession: ENCSR701TVL
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB895GMH
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting FOXM1

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS707SFV at ENCODE; https://www.encodeproject.org/ENCBS707SFV/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from hepatocyte (ENCLB850ZPP)

description:
https://www.encodeproject.org/experiments/ENCSR381DCY/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human LX cells (fetal hepatocyte cells derived from H9 stem cell)
experiment encode accession: ENCSR381DCY
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB850ZPP
size range: 450-650

value: hepatocyte

value: in vitro differentiated cells

value: Fetal hepatocyte derived from H9 stem cell

value: healthy

value: embryonic

value: 5 day

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCBS869UHI at ENCODE; https://www.encodeproject.org/ENCBS869UHI/


title: ChIA-PET from pulmonary artery endothelial cell (ENCLB509CNB)

description:
https://www.encodeproject.org/experiments/ENCSR668RDP/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human pulmonary artery endothelial cell
experiment encode accession: ENCSR668RDP
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB509CNB
size range: 450-650

source_name: Homo sapiens pulmonary artery endothelial primary cell

value: pulmonary artery endothelial cell

value: primary cell

value: not collected

value: unknown

value: Derived from ENCODE donor ENCDO726XUY; https://www.encodeproject.org/ENCDO726XUY/

value: ENCBS307JGV at ENCODE; https://www.encodeproject.org/ENCBS307JGV/


title: ChIA-PET from K1 (ENCLB887HIN)

description:
https://www.encodeproject.org/experiments/ENCSR314HAC/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD21 ChIA-PET in human K1 cells
experiment encode accession: ENCSR314HAC
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB887HIN
size range: 450-650

source_name: Homo sapiens K1 cell line

value: cell line

value: Thyroid carcinoma

value: Derived from ENCODE donor ENCDO958QPN; https://www.encodeproject.org/ENCDO958QPN/

value: ENCBS536QZY at ENCODE; https://www.encodeproject.org/ENCBS536QZY/

value: ENCODE dbxrefs Cellosaurus CVCL_2537; https://web.expasy.org/cellosaurus/CVCL_2537


title: CRISPRi RNA-seq from K562 (ENCLB903CPJ)

description:
https://www.encodeproject.org/experiments/ENCSR688UTN/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting NR2F2.
experiment encode accession: ENCSR688UTN
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB903CPJ
size range: >200

source_name: Homo sapiens K562 cell line genetically modified (interference) using CRISPR targeting NR2F2

value: female

value: chronic myelogenous leukemia (CML)

value: adult

value: 53 year

value: Sherman Weissman, Yale

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS376XFA at ENCODE; https://www.encodeproject.org/ENCBS376XFA/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; https://web.expasy.org/cellosaurus/CVCL_0004


title: ChIA-PET from GM19240 (ENCLB826GPJ)

description:
https://www.encodeproject.org/experiments/ENCSR312TUD/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in GM19240
experiment encode accession: ENCSR312TUD
assay title: ChIA-PET
encode release date: 2016-10-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB826GPJ
size range: 200-500

source_name: Homo sapiens GM19240 cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project, Yoruba in Ibadan, Nigera, treatment:Epstein-Barr Virus transformed

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ACN; https://www.encodeproject.org/ENCDO000ACN/

value: ENCBS338PQB at ENCODE; https://www.encodeproject.org/ENCBS338PQB/

value: ENCODE dbxrefs Cellosaurus CVCL_9635; https://web.expasy.org/cellosaurus/CVCL_9635


title: CRISPRi RNA-seq from K562 (ENCLB541YGI)

description:
https://www.encodeproject.org/experiments/ENCSR701TVL/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting FOXM1.
experiment encode accession: ENCSR701TVL
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB541YGI
size range: >200

value: cell line

value: ENCBS761TKS at ENCODE; https://www.encodeproject.org/ENCBS761TKS/


title: CRISPRi RNA-seq from K562 (ENCLB065ZRY)

description:
https://www.encodeproject.org/experiments/ENCSR688UTN/
***************
biological replicate number: 3
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting NR2F2.
experiment encode accession: ENCSR688UTN
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB065ZRY
size range: >200

value: ENCBS445QFM at ENCODE; https://www.encodeproject.org/ENCBS445QFM/


title: CRISPRi RNA-seq from K562 (ENCLB966CIU)

description:
https://www.encodeproject.org/experiments/ENCSR688UTN/
***************
biological replicate number: 4
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting NR2F2.
experiment encode accession: ENCSR688UTN
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR095PIC
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB966CIU
size range: >200

value: ENCBS306IPB at ENCODE; https://www.encodeproject.org/ENCBS306IPB/


title: CRISPRi RNA-seq from K562 (ENCLB198TMR)

description:
https://www.encodeproject.org/experiments/ENCSR713AEC/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated by CRISPR interference targeting HINFP.
experiment encode accession: ENCSR713AEC
assay title: CRISPRi RNA-seq
assembly: hg19, GRCh38
possible controls: ENCSR016WFQ
encode release date: 2017-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB198TMR
size range: >200

value: HINFP

value: female

value: ENCBS901WLZ at ENCODE; https://www.encodeproject.org/ENCBS901WLZ/


title: ChIA-PET from K1 (ENCLB518XOA)

description:
https://www.encodeproject.org/experiments/ENCSR314HAC/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD21 ChIA-PET in human K1 cells
experiment encode accession: ENCSR314HAC
assay title: ChIA-PET
encode release date: 2018-04-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB518XOA
size range: 450-650

value: not collected

value: Thyroid carcinoma

value: unknown

value: Derived from ENCODE donor ENCDO958QPN; https://www.encodeproject.org/ENCDO958QPN/

value: ENCBS044KRF at ENCODE; https://www.encodeproject.org/ENCBS044KRF/

value: ENCODE dbxrefs Cellosaurus CVCL_2537; https://web.expasy.org/cellosaurus/CVCL_2537