title: ChIP-seq from K562 (ENCLB235JTH)

description:
https://www.encodeproject.org/experiments/ENCSR953DVM/
***************
biological replicate number: 1
technical replicate number: 1
description: E2F8 ChIP-seq on human K562
experiment encode accession: ENCSR953DVM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB235JTH
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: female

value: ENCBS603CUX at ENCODE; https://www.encodeproject.org/ENCBS603CUX/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HepG2 (ENCLB531CKS)

status: Public on Mar 02 2019

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR412ZDC/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR412ZDC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB531CKS

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-AHR

tag: antibody

tag: line

value: cell line

tag: biosample encode accession

tag: Sex

value: male

tag: health state

value: hepatocellular carcinoma

tag: dev stage

value: child

tag: age

value: 15 year

tag: lab

value: Richard Myers, HAIB

tag: link

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS185KXL at ENCODE; https://www.encodeproject.org/ENCBS185KXL/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from RWPE2 (ENCLB798EFB)

description:
https://www.encodeproject.org/experiments/ENCSR394DWD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human RWPE2
experiment encode accession: ENCSR394DWD
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB798EFB
size range: 450-650

source_name: Homo sapiens RWPE2 cell line

value: Control

tag: description

value: RWPE-2 cells were derived from RWPE-1 cells (ATCC CRL-11609) by transformation with Ki-ras using the Kirsten murine sarcoma virus (Ki-MuSV). Epithelial cells from the peripheral zone of a histologically normal adult human prostate were transfected with a plasmid carrying one copy of the human papilloma virus 18 (HPV-18) genome to establish the RWPE-1 cell line (ATCC CRL-11609).

value: normal

value: 54 year

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ADM; https://www.encodeproject.org/ENCDO000ADM/

value: ENCBS942OEI at ENCODE; https://www.encodeproject.org/ENCBS942OEI/

value: ENCODE dbxrefs Cellosaurus CVCL_3792; https://web.expasy.org/cellosaurus/CVCL_3792


title: ChIP-seq from sigmoid colon (ENCLB352PUM)

description:
https://www.encodeproject.org/experiments/ENCSR403USE/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on sigmoid colon
experiment encode accession: ENCSR403USE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR481ZPB
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB352PUM

source_name: Homo sapiens sigmoid colon tissue female adult (53 years)

value: sigmoid colon

value: tissue

value: female

value: 53 year

value: adult

value: ENCBS440VLN at ENCODE; https://www.encodeproject.org/ENCBS440VLN/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/6e608c6e-94f9-4c52-b54d-8a54a2f1adee/@@download/attachment/83394.svs


title: ChIP-seq from breast epithelium (ENCLB616LCA)

description:
https://www.encodeproject.org/experiments/ENCSR400WEK/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on mammary gland
experiment encode accession: ENCSR400WEK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR237CQV
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB616LCA

source_name: Homo sapiens breast epithelium tissue female adult (51 year)

value: breast epithelium

value: Richard Myers, HAIB

value: 51 year

value: ENCBS605KKW at ENCODE; https://www.encodeproject.org/ENCBS605KKW/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/4c46760c-02dc-44f9-9cfd-998541ed88be/@@download/attachment/84271.svs


title: ChIP-seq from HEK293 (ENCLB583PRN)

description:
https://www.encodeproject.org/experiments/ENCSR396SKI/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF331 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR396SKI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB583PRN
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF331 originated from HEK293

value: cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF331 under the control of a CMV promoter.

value: unknown

value: embryonic

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS173TWR at ENCODE; https://www.encodeproject.org/ENCBS173TWR/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from HepG2 (ENCLB909BWD)

description:
https://www.encodeproject.org/experiments/ENCSR928API/
***************
biological replicate number: 3
technical replicate number: 1
description: RFX1 ChIP-seq on human HepG2
experiment encode accession: ENCSR928API
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2017-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB909BWD

source_name: Homo sapiens HepG2 immortalized cell line

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS803ZJJ at ENCODE; https://www.encodeproject.org/ENCBS803ZJJ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HepG2 (ENCLB049ZHK)

description:
https://www.encodeproject.org/experiments/ENCSR928API/
***************
biological replicate number: 2
technical replicate number: 1
description: RFX1 ChIP-seq on human HepG2
experiment encode accession: ENCSR928API
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2017-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB049ZHK
size range: 450-650

value: Hepatocellular carcinoma

value: ENCBS716YFX at ENCODE; https://www.encodeproject.org/ENCBS716YFX/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB949FAT)

description:
https://www.encodeproject.org/experiments/ENCSR396SKI/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF331 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR396SKI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB949FAT
size range: 450-650

value: cell line

value: female

value: ENCBS649ULL at ENCODE; https://www.encodeproject.org/ENCBS649ULL/


title: ChIP-seq from K562 (ENCLB275UYF)

description:
https://www.encodeproject.org/experiments/ENCSR389PWB/
***************
biological replicate number: 1
technical replicate number: 1
description: ZBTB5 ChIP-seq on human K562
experiment encode accession: ENCSR389PWB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB275UYF
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS298PAM at ENCODE; https://www.encodeproject.org/ENCBS298PAM/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from vagina (ENCLB814DDC)

description:
https://www.encodeproject.org/experiments/ENCSR919UCY/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on vagina
experiment encode accession: ENCSR919UCY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR475KZM
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB814DDC

source_name: Homo sapiens vagina tissue female adult (53 years)

value: vagina

value: tissue

value: Richard Myers, HAIB

value: ENCBS698MLA at ENCODE; https://www.encodeproject.org/ENCBS698MLA/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/4f67ef38-4ded-41cb-b456-56c2bc46dc9d/@@download/attachment/83378.svs


title: ChIP-seq from MCF-7 (ENCLB933KNX)

description:
https://www.encodeproject.org/experiments/ENCSR912ATU/
***************
biological replicate number: 3
technical replicate number: 1
description: ZNF217 ChIP-seq on human MCF-7
experiment encode accession: ENCSR912ATU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-11-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB933KNX

source_name: Homo sapiens MCF-7 cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCBS902LKX at ENCODE; https://www.encodeproject.org/ENCBS902LKX/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; https://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from K562 (ENCLB091OYE)

description:
https://www.encodeproject.org/experiments/ENCSR389PWB/
***************
biological replicate number: 2
technical replicate number: 1
description: ZBTB5 ChIP-seq on human K562
experiment encode accession: ENCSR389PWB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB091OYE
size range: 450-650

value: cell line

value: female

value: Michael Snyder, Stanford

value: ENCBS357NWO at ENCODE; https://www.encodeproject.org/ENCBS357NWO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HepG2 (ENCLB422PPP)

description:
https://www.encodeproject.org/experiments/ENCSR387JKT/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR387JKT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-19
lab: Richard Myers, HAIB
library encode accession: ENCLB422PPP

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-KDM3A

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS746FKV at ENCODE; https://www.encodeproject.org/ENCBS746FKV/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from MCF-7 (ENCLB219ADS)

description:
https://www.encodeproject.org/experiments/ENCSR912ATU/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF217 ChIP-seq on human MCF-7
experiment encode accession: ENCSR912ATU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-11-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB219ADS
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: adult

value: breast cancer (adenocarcinoma)

value: ENCBS488MMM at ENCODE; https://www.encodeproject.org/ENCBS488MMM/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from stomach (ENCLB557NCF)

description:
https://www.encodeproject.org/experiments/ENCSR905UJI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Tue Aug 30 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR905UJI
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-11-09
lab: Richard Myers, HAIB
library encode accession: ENCLB557NCF

source_name: Homo sapiens stomach tissue female adult (51 year)

extract_protocol:
extraction protocol: https://www.encodeproject.org/documents/a59e54bc-ec64-4401-8cf6-b60161e1eae9/@@download/attachment/EN-TEx%20ChIP-seq%20Protocol%20-%20Myers%20Lab.pdf
extraction method: see document

value: Control

value: stomach

value: tissue

value: Richard Myers, HAIB

value: 51 year

value: ENCBS066DAE at ENCODE; https://www.encodeproject.org/ENCBS066DAE/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/30eab777-0f1f-4412-807d-a20ab5c6589d/@@download/attachment/84279.svs


title: ChIP-seq from HepG2 (ENCLB713TXJ)

description:
https://www.encodeproject.org/experiments/ENCSR387JKT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR387JKT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-19
lab: Richard Myers, HAIB
library encode accession: ENCLB713TXJ

value: cell line

value: male

value: hepatocellular carcinoma

value: child

value: ENCBS977WJN at ENCODE; https://www.encodeproject.org/ENCBS977WJN/


title: ChIP-seq from sigmoid colon (ENCLB724DPN)

description:
https://www.encodeproject.org/experiments/ENCSR920FID/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on sigmoid colon
experiment encode accession: ENCSR920FID
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR100FGR
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB724DPN

source_name: Homo sapiens sigmoid colon tissue male adult (37 years)

value: sigmoid colon

value: 37 year

value: adult

value: ENCBS806WZK at ENCODE; https://www.encodeproject.org/ENCBS806WZK/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from K562 (ENCLB281PIG)

description:
https://www.encodeproject.org/experiments/ENCSR910NJG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-NFE2L1 tagged K562 cell line.
experiment encode accession: ENCSR910NJG
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB281PIG

source_name: Homo sapiens K562 cell line stably expressing C-terminal eGFP-tagged eGFP-NFE2L1

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to NFE2L1

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: Kevin White, UChicago

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCBS918KOX at ENCODE; https://www.encodeproject.org/ENCBS918KOX/

value: ENCODE dbxrefs Cellosaurus CVCL_AW35; https://web.expasy.org/cellosaurus/CVCL_AW35


title: ChIP-seq from neural cell (ENCLB567CMS)

description:
https://www.encodeproject.org/experiments/ENCSR404BPV/
***************
biological replicate number: 1
technical replicate number: 2
description: SMC3 ChIP-seq on human neural cell
experiment encode accession: ENCSR404BPV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR634PYN
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB567CMS

source_name: Homo sapiens neural in vitro differentiated cells male embryo originated from H1-hESC

value: neural cell

value: in vitro differentiated cells

value: Neurons derived from H1 embryonic stem cells

value: male

value: Michael Snyder, Stanford

value: healthy

value: unknown

value: embryonic

value: ENCBS980OYK at ENCODE; https://www.encodeproject.org/ENCBS980OYK/

value: derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/

value: ENCODE dbxrefs H1-neurons; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=H1-neurons


title: ChIP-seq from gastroesophageal sphincter (ENCLB536FJZ)

description:
https://www.encodeproject.org/experiments/ENCSR916JAC/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on esophagogastric junction
experiment encode accession: ENCSR916JAC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR810YKX
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB536FJZ

source_name: Homo sapiens gastroesophageal sphincter tissue male adult (37 years)

value: gastroesophageal sphincter

value: tissue

value: Richard Myers, HAIB

value: 37 year

value: adult

value: ENCBS057FSI at ENCODE; https://www.encodeproject.org/ENCBS057FSI/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from liver (ENCLB708MUV)

description:
https://www.encodeproject.org/experiments/ENCSR386YIH/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on SP1-human
experiment encode accession: ENCSR386YIH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR443AIH
encode release date: 2018-02-08
lab: Richard Myers, HAIB
library encode accession: ENCLB708MUV

source_name: Homo sapiens liver tissue female child (4 years)

value: liver

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: female

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from liver (ENCLB314EBB)

description:
https://www.encodeproject.org/experiments/ENCSR386YIH/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on SP1-human
experiment encode accession: ENCSR386YIH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR443AIH
encode release date: 2018-02-08
lab: Richard Myers, HAIB
library encode accession: ENCLB314EBB

value: healthy

value: Michael Snyder, Stanford


title: ChIP-seq from RWPE2 (ENCLB563ZFD)

description:
https://www.encodeproject.org/experiments/ENCSR394DWD/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human RWPE2
experiment encode accession: ENCSR394DWD
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB563ZFD
size range: 450-650

value: Control

value: cell line

value: RWPE-2 cells were derived from RWPE-1 cells (ATCC CRL-11609) by transformation with Ki-ras using the Kirsten murine sarcoma virus (Ki-MuSV). Epithelial cells from the peripheral zone of a histologically normal adult human prostate were transfected with a plasmid carrying one copy of the human papilloma virus 18 (HPV-18) genome to establish the RWPE-1 cell line (ATCC CRL-11609).

value: male

value: normal

value: 54 year

value: Derived from ENCODE donor ENCDO000ADM; https://www.encodeproject.org/ENCDO000ADM/

value: ENCBS796LYI at ENCODE; https://www.encodeproject.org/ENCBS796LYI/

value: ENCODE dbxrefs Cellosaurus CVCL_3792; https://web.expasy.org/cellosaurus/CVCL_3792


title: ChIP-seq from HepG2 (ENCLB861TXD)

description:
https://www.encodeproject.org/experiments/ENCSR384OZQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2-human (fragmentation date:2015-08-16
experiment encode accession: ENCSR384OZQ
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB861TXD

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ZNF3 fusion protein

value: Richard Myers, HAIB

value: hepatocellular carcinoma

value: 15 year

value: ENCBS531RMF at ENCODE; https://www.encodeproject.org/ENCBS531RMF/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from spleen (ENCLB893TFX)

description:
https://www.encodeproject.org/experiments/ENCSR384HXX/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Thu Nov 10 2016 00:00:00 GMT-0600 (CST)
experiment encode accession: ENCSR384HXX
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB893TFX

source_name: Homo sapiens male adult (37 years) spleen tissue

value: spleen

value: tissue

value: adult

value: 37 year

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/

value: ENCBS017NWO at ENCODE; https://www.encodeproject.org/ENCBS017NWO/


title: ChIP-seq from K562 (ENCLB938IWD)

description:
https://www.encodeproject.org/experiments/ENCSR898XMH/
***************
biological replicate number: 1
technical replicate number: 1
description: ZFP91 ChIP-seq on human K562
experiment encode accession: ENCSR898XMH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2018-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB938IWD
size range: 450-650

value: cell line

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS831ATS at ENCODE; https://www.encodeproject.org/ENCBS831ATS/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB433CWM)

description:
https://www.encodeproject.org/experiments/ENCSR898XMH/
***************
biological replicate number: 2
technical replicate number: 1
description: ZFP91 ChIP-seq on human K562
experiment encode accession: ENCSR898XMH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2018-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB433CWM
size range: 450-650

value: ENCBS734NZL at ENCODE; https://www.encodeproject.org/ENCBS734NZL/


title: ChIP-seq from HepG2 (ENCLB535AMB)

description:
https://www.encodeproject.org/experiments/ENCSR399MAN/
***************
biological replicate number: 5
technical replicate number: 2
description: Reverse Crosslink Control ChIP-seq on human HepG2 (fragmentation date 11-12-12)
experiment encode accession: ENCSR399MAN
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-01-08
lab: Richard Myers, HAIB
library encode accession: ENCLB535AMB
size range: 100-500

value: Control

value: HepG2, hepatocellular carcinoma

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS485OKN at ENCODE; https://www.encodeproject.org/ENCBS485OKN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from MCF-7 (ENCLB181EOK)

description:
https://www.encodeproject.org/experiments/ENCSR897ZXU/
***************
biological replicate number: 2
technical replicate number: 1
description: E2F8 ChIP-seq on human MCF-7
experiment encode accession: ENCSR897ZXU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB181EOK
size range: 450-650

value: cell line

value: adult

value: 69 year

value: female

value: breast cancer (adenocarcinoma)

value: ENCBS705BBA at ENCODE; https://www.encodeproject.org/ENCBS705BBA/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from esophagus muscularis mucosa (ENCLB844MKE)

description:
https://www.encodeproject.org/experiments/ENCSR373YFT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Wed Sep 07 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR373YFT
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB844MKE

source_name: Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)

value: Control

value: esophagus muscularis mucosa

value: tissue

value: 37 year

value: ENCBS243YQD at ENCODE; https://www.encodeproject.org/ENCBS243YQD/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from K562 (ENCLB233EPJ)

description:
https://www.encodeproject.org/experiments/ENCSR893WSB/
***************
biological replicate number: 1
technical replicate number: 1
description: HDAC2 ChIP-seq on human K562
experiment encode accession: ENCSR893WSB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB233EPJ
size range: 450-650

value: 53 year

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS387VPF at ENCODE; https://www.encodeproject.org/ENCBS387VPF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HEK293 (ENCLB176IAO)

description:
https://www.encodeproject.org/experiments/ENCSR371LLY/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF37A ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR371LLY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB176IAO
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF37A originated from HEK293

value: cell line

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS423UYJ at ENCODE; https://www.encodeproject.org/ENCBS423UYJ/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from MCF-7 (ENCLB126MSR)

description:
https://www.encodeproject.org/experiments/ENCSR897ZXU/
***************
biological replicate number: 1
technical replicate number: 1
description: E2F8 ChIP-seq on human MCF-7
experiment encode accession: ENCSR897ZXU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB126MSR
size range: 450-650

value: adult

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS158RRU at ENCODE; https://www.encodeproject.org/ENCBS158RRU/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from K562 (ENCLB006KXG)

description:
https://www.encodeproject.org/experiments/ENCSR893WSB/
***************
biological replicate number: 2
technical replicate number: 1
description: HDAC2 ChIP-seq on human K562
experiment encode accession: ENCSR893WSB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB006KXG
size range: 450-650

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS352MRW at ENCODE; https://www.encodeproject.org/ENCBS352MRW/


title: ChIP-seq from K562 (ENCLB539MDU)

description:
https://www.encodeproject.org/experiments/ENCSR370NFS/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF280A ChIP-seq on human K562
experiment encode accession: ENCSR370NFS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB539MDU
size range: 450-650

value: chronic myelogenous leukemia (CML)

value: ENCBS734NZL at ENCODE; https://www.encodeproject.org/ENCBS734NZL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from gastroesophageal sphincter (ENCLB213FPP)

description:
https://www.encodeproject.org/experiments/ENCSR361LSG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human esophagogastric junction
experiment encode accession: ENCSR361LSG
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB213FPP
size range: 450-650

source_name: Homo sapiens female adult (53 years) gastroesophageal sphincter tissue

value: Control

value: gastroesophageal sphincter

value: tissue

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: ENCBS185KVE at ENCODE; https://www.encodeproject.org/ENCBS185KVE/


title: ChIP-seq from sigmoid colon (ENCLB906LSH)

description:
https://www.encodeproject.org/experiments/ENCSR883DDV/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Mon Sep 19 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR883DDV
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB906LSH

source_name: Homo sapiens sigmoid colon tissue male adult (54 years)

value: sigmoid colon

value: male

value: Richard Myers, HAIB

value: 54 year

value: adult

value: ENCBS089VLX at ENCODE; https://www.encodeproject.org/ENCBS089VLX/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/f08e09e8-d571-4a80-b574-da7e167668d5/@@download/attachment/82367.svs


title: ChIP-seq from bipolar neuron (ENCLB416DJZ)

description:
https://www.encodeproject.org/experiments/ENCSR362VCG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on biopolar spindle neuron
experiment encode accession: ENCSR362VCG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR138PGW
encode release date: 2016-09-23
lab: Richard Myers, HAIB
library encode accession: ENCLB416DJZ

source_name: Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell

value: bipolar neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: Thomas Gingeras, CSHL

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from K562 (ENCLB600YKC)

description:
https://www.encodeproject.org/experiments/ENCSR370NFS/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF280A ChIP-seq on human K562
experiment encode accession: ENCSR370NFS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB600YKC
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: cell line

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS721MSZ at ENCODE; https://www.encodeproject.org/ENCBS721MSZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from neural cell (ENCLB940EZW)

description:
https://www.encodeproject.org/experiments/ENCSR404BPV/
***************
biological replicate number: 2
technical replicate number: 1
description: SMC3 ChIP-seq on human neural cell
experiment encode accession: ENCSR404BPV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR634PYN
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB940EZW
size range: 450-650

value: neural cell

value: Neurons derived from H1 embryonic stem cells

value: male

value: healthy

value: unknown

value: embryonic

value: ENCBS163EMU at ENCODE; https://www.encodeproject.org/ENCBS163EMU/

value: derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/

value: ENCODE dbxrefs H1-neurons; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=H1-neurons


title: ChIP-seq from HepG2 (ENCLB126INR)

description:
https://www.encodeproject.org/experiments/ENCSR369YUK/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR369YUK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB126INR

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-FOXP1

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS068NKE at ENCODE; https://www.encodeproject.org/ENCBS068NKE/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HepG2 (ENCLB433JGB)

description:
https://www.encodeproject.org/experiments/ENCSR369YUK/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR369YUK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB433JGB

value: cell line

value: ENCBS680FYH at ENCODE; https://www.encodeproject.org/ENCBS680FYH/


title: ChIP-seq from liver (ENCLB240AOY)

description:
https://www.encodeproject.org/experiments/ENCSR352QSB/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on RXRA-human
experiment encode accession: ENCSR352QSB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR769JUI
encode release date: 2017-12-01
lab: Richard Myers, HAIB
library encode accession: ENCLB240AOY

value: RXRA

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: female

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from HepG2 (ENCLB950FUU)

description:
https://www.encodeproject.org/experiments/ENCSR856HWY/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2-human (fragmentation date:2015-08-26
experiment encode accession: ENCSR856HWY
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB950FUU

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ATF4 fusion protein

value: Control

value: child

value: male

value: hepatocellular carcinoma

value: ENCBS743RUU at ENCODE; https://www.encodeproject.org/ENCBS743RUU/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from suprapubic skin (ENCLB386JNH)

description:
https://www.encodeproject.org/experiments/ENCSR861XGM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on suprapubic skin
experiment encode accession: ENCSR861XGM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR467CRM
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB386JNH

source_name: Homo sapiens suprapubic skin tissue male adult (54 years)

value: suprapubic skin

value: Richard Myers, HAIB

value: 54 year

value: adult

value: ENCBS471QWL at ENCODE; https://www.encodeproject.org/ENCBS471QWL/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/f5435929-2851-47b5-adeb-b58261a3b1e7/@@download/attachment/82377.svs


title: ChIP-seq from RWPE2 (ENCLB933LMG)

description:
https://www.encodeproject.org/experiments/ENCSR856JJB/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human RWPE2
experiment encode accession: ENCSR856JJB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR394DWD
encode release date: 2017-07-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB933LMG
size range: 450-650

source_name: Homo sapiens RWPE2 cell line

value: CTCF

value: cell line

value: RWPE-2 cells were derived from RWPE-1 cells (ATCC CRL-11609) by transformation with Ki-ras using the Kirsten murine sarcoma virus (Ki-MuSV). Epithelial cells from the peripheral zone of a histologically normal adult human prostate were transfected with a plasmid carrying one copy of the human papilloma virus 18 (HPV-18) genome to establish the RWPE-1 cell line (ATCC CRL-11609).

value: normal

value: Derived from ENCODE donor ENCDO000ADM; https://www.encodeproject.org/ENCDO000ADM/

value: ENCBS942OEI at ENCODE; https://www.encodeproject.org/ENCBS942OEI/

value: ENCODE dbxrefs Cellosaurus CVCL_3792; https://web.expasy.org/cellosaurus/CVCL_3792


title: ChIP-seq from HEK293 (ENCLB507TBI)

description:
https://www.encodeproject.org/experiments/ENCSR859RAO/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-YY1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR859RAO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-01-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB507TBI
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-YY1 originated from HEK293

value: female

value: unknown

value: embryonic

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS884IXW at ENCODE; https://www.encodeproject.org/ENCBS884IXW/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from RWPE2 (ENCLB666CZM)

description:
https://www.encodeproject.org/experiments/ENCSR856JJB/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on human RWPE2
experiment encode accession: ENCSR856JJB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR394DWD
encode release date: 2017-07-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB666CZM
size range: 450-650

value: male

value: adult

value: 54 year

value: ENCBS796LYI at ENCODE; https://www.encodeproject.org/ENCBS796LYI/


title: ChIP-seq from MCF-7 (ENCLB246AXW)

description:
https://www.encodeproject.org/experiments/ENCSR337NQP/
***************
biological replicate number: 2
technical replicate number: 1
description: ESRRA ChIP-seq on human MCF-7
experiment encode accession: ENCSR337NQP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB246AXW
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: ESRRA

value: cell line

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS868OVR at ENCODE; https://www.encodeproject.org/ENCBS868OVR/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from HepG2 (ENCLB447CUI)

description:
https://www.encodeproject.org/experiments/ENCSR340BXT/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR340BXT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB447CUI

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-KAT7

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS145CLO at ENCODE; https://www.encodeproject.org/ENCBS145CLO/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HEK293 (ENCLB907BRY)

description:
https://www.encodeproject.org/experiments/ENCSR371LLY/
***************
biological replicate number: 3
technical replicate number: 1
description: eGFP-ZNF37A ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR371LLY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB907BRY
size range: 450-650

value: female

value: unknown

value: embryonic

value: Michael Snyder, Stanford

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS309HUP at ENCODE; https://www.encodeproject.org/ENCBS309HUP/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from HEK293 (ENCLB867JXP)

description:
https://www.encodeproject.org/experiments/ENCSR859RAO/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-YY1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR859RAO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-01-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB867JXP
size range: 450-650

value: cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-YY1 under the control of a CMV promoter.

value: ENCBS082ZRX at ENCODE; https://www.encodeproject.org/ENCBS082ZRX/


title: ChIP-seq from spleen (ENCLB452FSL)

description:
https://www.encodeproject.org/experiments/ENCSR350PUV/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on spleen
experiment encode accession: ENCSR350PUV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR512MNA
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB452FSL

source_name: Homo sapiens female adult (51 year) spleen tissue

value: spleen

value: tissue

value: adult

value: 51 year

value: Derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: ENCBS799OOB at ENCODE; https://www.encodeproject.org/ENCBS799OOB/


title: ChIP-seq from HepG2 (ENCLB552ZLZ)

description:
https://www.encodeproject.org/experiments/ENCSR340BXT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR340BXT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB552ZLZ

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS940TDV at ENCODE; https://www.encodeproject.org/ENCBS940TDV/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB028OIZ)

description:
https://www.encodeproject.org/experiments/ENCSR851BNE/
***************
biological replicate number: 1
technical replicate number: 1
description: MEIS2 ChIP-seq on human K562
experiment encode accession: ENCSR851BNE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB028OIZ
size range: 450-650

value: cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Michael Snyder, Stanford

value: ENCBS048GNZ at ENCODE; https://www.encodeproject.org/ENCBS048GNZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from upper lobe of left lung (ENCLB228MFG)

description:
https://www.encodeproject.org/experiments/ENCSR893MYW/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on upper lobe of left lung
experiment encode accession: ENCSR893MYW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR703OGS
encode release date: 2017-10-31
lab: Richard Myers, HAIB
library encode accession: ENCLB228MFG

source_name: Homo sapiens upper lobe of left lung tissue female adult (51 year)

value: upper lobe of left lung

value: tissue

value: 51 year

value: adult

value: ENCBS002CZJ at ENCODE; https://www.encodeproject.org/ENCBS002CZJ/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/f8b74c7e-cf6f-47be-9589-d693effd4258/@@download/attachment/84269.svs


title: ChIP-seq from liver (ENCLB464EOV)

description:
https://www.encodeproject.org/experiments/ENCSR352QSB/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on RXRA-human
experiment encode accession: ENCSR352QSB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR769JUI
encode release date: 2017-12-01
lab: Richard Myers, HAIB
library encode accession: ENCLB464EOV

source_name: Homo sapiens liver tissue female child (4 years)

value: RXRA

value: liver

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: healthy

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from neural cell (ENCLB606LQR)

description:
https://www.encodeproject.org/experiments/ENCSR843ZUP/
***************
biological replicate number: 1
technical replicate number: 2
description: EP300 ChIP-seq on human neural cell
experiment encode accession: ENCSR843ZUP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR634PYN
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB606LQR

source_name: Homo sapiens neural in vitro differentiated cells male embryo originated from H1-hESC

value: neural cell

value: in vitro differentiated cells

value: Neurons derived from H1 embryonic stem cells

value: male

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS980OYK at ENCODE; https://www.encodeproject.org/ENCBS980OYK/

value: derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/

value: ENCODE dbxrefs H1-neurons; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=H1-neurons


title: ChIP-seq from neural cell (ENCLB090TSU)

description:
https://www.encodeproject.org/experiments/ENCSR843ZUP/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on human neural cell
experiment encode accession: ENCSR843ZUP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR634PYN
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB090TSU
size range: 450-650


title: ChIP-seq from K562 (ENCLB850KSG)

description:
https://www.encodeproject.org/experiments/ENCSR315NNL/
***************
biological replicate number: 1
technical replicate number: 1
description: CHAMP1 ChIP-seq on human K562
experiment encode accession: ENCSR315NNL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB850KSG
size range: 450-650

value: cell line

value: adult

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS697XFI at ENCODE; https://www.encodeproject.org/ENCBS697XFI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB310FIV)

description:
https://www.encodeproject.org/experiments/ENCSR325DER/
***************
biological replicate number: 2
technical replicate number: 1
description: NR3C1 ChIP-seq on human K562
experiment encode accession: ENCSR325DER
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB310FIV
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: ENCBS839CNN at ENCODE; https://www.encodeproject.org/ENCBS839CNN/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from neural cell (ENCLB245PWO)

description:
https://www.encodeproject.org/experiments/ENCSR843ZUP/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on human neural cell
experiment encode accession: ENCSR843ZUP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR634PYN
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB245PWO
size range: 450-650

value: neural cell

value: in vitro differentiated cells

value: Neurons derived from H1 embryonic stem cells

value: male

value: Michael Snyder, Stanford

value: healthy

value: ENCBS163EMU at ENCODE; https://www.encodeproject.org/ENCBS163EMU/


title: ChIP-seq from MCF-7 (ENCLB210VJS)

description:
https://www.encodeproject.org/experiments/ENCSR841YWU/
***************
biological replicate number: 2
technical replicate number: 1
description: E4F1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR841YWU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB210VJS
size range: 450-650

value: cell line

value: adult

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS308QKF at ENCODE; https://www.encodeproject.org/ENCBS308QKF/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from K562 (ENCLB516EPQ)

description:
https://www.encodeproject.org/experiments/ENCSR325DER/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 ChIP-seq on human K562
experiment encode accession: ENCSR325DER
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB516EPQ
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS048GNZ at ENCODE; https://www.encodeproject.org/ENCBS048GNZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from MCF-7 (ENCLB128PEL)

description:
https://www.encodeproject.org/experiments/ENCSR337NQP/
***************
biological replicate number: 1
technical replicate number: 1
description: ESRRA ChIP-seq on human MCF-7
experiment encode accession: ENCSR337NQP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB128PEL
size range: 450-650

value: ESRRA

value: Michael Snyder, Stanford

value: ENCBS764AUT at ENCODE; https://www.encodeproject.org/ENCBS764AUT/


title: ChIP-seq from K562 (ENCLB721DGC)

description:
https://www.encodeproject.org/experiments/ENCSR315NNL/
***************
biological replicate number: 3
technical replicate number: 1
description: CHAMP1 ChIP-seq on human K562
experiment encode accession: ENCSR315NNL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB721DGC

value: cell line

value: ENCBS187ZIN at ENCODE; https://www.encodeproject.org/ENCBS187ZIN/


title: ChIP-seq from breast epithelium (ENCLB296OFM)

description:
https://www.encodeproject.org/experiments/ENCSR844PVS/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on mammary gland
experiment encode accession: ENCSR844PVS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR951JUP
encode release date: 2017-11-01
lab: Richard Myers, HAIB
library encode accession: ENCLB296OFM

source_name: Homo sapiens breast epithelium tissue male adult (54 years)

value: breast epithelium

value: tissue

value: male

value: Richard Myers, HAIB

value: 54 year

value: adult

value: ENCBS173VHR at ENCODE; https://www.encodeproject.org/ENCBS173VHR/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/3a8c7636-3c0d-4a8c-b793-17502ed1acc2/@@download/attachment/82375.svs


title: ChIP-seq from subcutaneous adipose tissue (ENCLB270HFZ)

description:
https://www.encodeproject.org/experiments/ENCSR830SSM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human adipose tissue
experiment encode accession: ENCSR830SSM
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB270HFZ
size range: 450-650

source_name: Homo sapiens male adult (54 years) subcutaneous adipose tissue

value: Control

value: subcutaneous adipose tissue

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: ENCBS451YUK at ENCODE; https://www.encodeproject.org/ENCBS451YUK/


title: ChIP-seq from neural cell (ENCLB817AFA)

description:
https://www.encodeproject.org/experiments/ENCSR822CEA/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human neural cell
experiment encode accession: ENCSR822CEA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR634PYN
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB817AFA
size range: 450-650

value: CTCF

value: neural cell

value: in vitro differentiated cells

value: Neurons derived from H1 embryonic stem cells

value: Michael Snyder, Stanford

value: healthy

value: unknown

value: embryonic

value: ENCBS980OYK at ENCODE; https://www.encodeproject.org/ENCBS980OYK/

value: derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/

value: ENCODE dbxrefs H1-neurons; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=H1-neurons


title: ChIP-seq from neural cell (ENCLB967LQE)

description:
https://www.encodeproject.org/experiments/ENCSR822CEA/
***************
biological replicate number: 1
technical replicate number: 2
description: CTCF ChIP-seq on human neural cell
experiment encode accession: ENCSR822CEA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR634PYN
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB967LQE

value: male


title: ChIP-seq from HepG2 (ENCLB326XDR)

description:
https://www.encodeproject.org/experiments/ENCSR313ISY/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2-human (fragmentation date:2015-08-02
experiment encode accession: ENCSR313ISY
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB326XDR

value: cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS743RUU at ENCODE; https://www.encodeproject.org/ENCBS743RUU/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HEK293 (ENCLB356WMZ)

description:
https://www.encodeproject.org/experiments/ENCSR298QUH/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-MZF1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR298QUH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB356WMZ
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-MZF1 originated from HEK293

value: female

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS970FPD at ENCODE; https://www.encodeproject.org/ENCBS970FPD/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from K562 (ENCLB932JAV)

description:
https://www.encodeproject.org/experiments/ENCSR325RLL/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2B ChIP-seq on human K562
experiment encode accession: ENCSR325RLL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB932JAV
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: 53 year

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS603CUX at ENCODE; https://www.encodeproject.org/ENCBS603CUX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB658JZH)

description:
https://www.encodeproject.org/experiments/ENCSR325RLL/
***************
biological replicate number: 2
technical replicate number: 1
description: POLR2B ChIP-seq on human K562
experiment encode accession: ENCSR325RLL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB658JZH
size range: 450-650

value: cell line

value: ENCBS344LIE at ENCODE; https://www.encodeproject.org/ENCBS344LIE/


title: ChIP-seq from neural cell (ENCLB418TXJ)

description:
https://www.encodeproject.org/experiments/ENCSR822CEA/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on human neural cell
experiment encode accession: ENCSR822CEA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR634PYN
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB418TXJ
size range: 450-650

value: CTCF

value: neural cell

value: in vitro differentiated cells

value: Neurons derived from H1 embryonic stem cells

value: male

value: healthy

value: unknown

value: embryonic

value: ENCBS163EMU at ENCODE; https://www.encodeproject.org/ENCBS163EMU/

value: derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/

value: ENCODE dbxrefs H1-neurons; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=H1-neurons


title: ChIP-seq from K562 (ENCLB019HCL)

description:
https://www.encodeproject.org/experiments/ENCSR851BNE/
***************
biological replicate number: 2
technical replicate number: 1
description: MEIS2 ChIP-seq on human K562
experiment encode accession: ENCSR851BNE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB019HCL
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Michael Snyder, Stanford

value: ENCBS044UVO at ENCODE; https://www.encodeproject.org/ENCBS044UVO/


title: ChIP-seq from HEK293 (ENCLB607DMC)

description:
https://www.encodeproject.org/experiments/ENCSR298QUH/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-MZF1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR298QUH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB607DMC
size range: 450-650

value: cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-MZF1 under the control of a CMV promoter.

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS647IEQ at ENCODE; https://www.encodeproject.org/ENCBS647IEQ/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from GM12878 (ENCLB777ZWH)

description:
https://www.encodeproject.org/experiments/ENCSR813DCK/
***************
biological replicate number: 2
technical replicate number: 1
description: SMAD1 ChIP-seq on human GM12878
experiment encode accession: ENCSR813DCK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB777ZWH
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: unknown

value: ENCBS389LEA at ENCODE; https://www.encodeproject.org/ENCBS389LEA/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from GM12878 (ENCLB107ZYE)

description:
https://www.encodeproject.org/experiments/ENCSR813DCK/
***************
biological replicate number: 1
technical replicate number: 1
description: SMAD1 ChIP-seq on human GM12878
experiment encode accession: ENCSR813DCK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB107ZYE
size range: 450-650

value: ENCBS339VHO at ENCODE; https://www.encodeproject.org/ENCBS339VHO/


title: ChIP-seq from gastroesophageal sphincter (ENCLB740WXM)

description:
https://www.encodeproject.org/experiments/ENCSR810YKX/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Tue Sep 20 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR810YKX
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB740WXM

source_name: Homo sapiens gastroesophageal sphincter tissue male adult (37 years)

value: Control

value: gastroesophageal sphincter

value: tissue

value: male

value: Richard Myers, HAIB

value: 37 year

value: ENCBS057FSI at ENCODE; https://www.encodeproject.org/ENCBS057FSI/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HEK293 (ENCLB496YOG)

description:
https://www.encodeproject.org/experiments/ENCSR295GRB/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF213 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR295GRB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB496YOG
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF213 originated from HEK293

value: cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF213 under the control of a CMV promoter.

value: female

value: embryonic

value: Michael Snyder, Stanford

value: ENCBS468SAY at ENCODE; https://www.encodeproject.org/ENCBS468SAY/


title: ChIP-seq from HEK293 (ENCLB292FFF)

description:
https://www.encodeproject.org/experiments/ENCSR295GRB/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF213 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR295GRB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB292FFF
size range: 450-650

value: unknown

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS647GSD at ENCODE; https://www.encodeproject.org/ENCBS647GSD/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from A549 (ENCLB882JRS)

description:
https://www.encodeproject.org/experiments/ENCSR294JWV/
***************
biological replicate number: 3
technical replicate number: 1
description: ZFP36 ChIP-seq on human A549
experiment encode accession: ENCSR294JWV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB882JRS
size range: 450-650

source_name: Homo sapiens A549 immortalized cell line

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: adult

value: 58 year

value: ENCBS611JSC at ENCODE; https://www.encodeproject.org/ENCBS611JSC/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from MCF-7 (ENCLB213XGU)

description:
https://www.encodeproject.org/experiments/ENCSR841YWU/
***************
biological replicate number: 1
technical replicate number: 1
description: E4F1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR841YWU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB213XGU
size range: 450-650

value: cell line

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS957OEW at ENCODE; https://www.encodeproject.org/ENCBS957OEW/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from liver (ENCLB603YBF)

description:
https://www.encodeproject.org/experiments/ENCSR290ZOS/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on EGR1-human
experiment encode accession: ENCSR290ZOS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR443AIH
encode release date: 2018-02-08
lab: Richard Myers, HAIB
library encode accession: ENCLB603YBF

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: female

value: healthy

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from K562 (ENCLB890WIR)

description:
https://www.encodeproject.org/experiments/ENCSR797SWM/
***************
biological replicate number: 4
technical replicate number: 1
description: MITF ChIP-seq on human K562
experiment encode accession: ENCSR797SWM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB890WIR
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: MITF

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS207UAM at ENCODE; https://www.encodeproject.org/ENCBS207UAM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HEK293 (ENCLB467UYS)

description:
https://www.encodeproject.org/experiments/ENCSR283DOU/
***************
biological replicate number: 3
technical replicate number: 1
description: eGFP-ZNF660 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR283DOU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB467UYS
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF660 originated from HEK293

value: cell line

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS336GTC at ENCODE; https://www.encodeproject.org/ENCBS336GTC/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from liver (ENCLB579CUZ)

description:
https://www.encodeproject.org/experiments/ENCSR290ZOS/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on EGR1-human
experiment encode accession: ENCSR290ZOS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR443AIH
encode release date: 2018-02-08
lab: Richard Myers, HAIB
library encode accession: ENCLB579CUZ

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: female

value: healthy

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/


title: ChIP-seq from GM12878 (ENCLB649UXL)

description:
https://www.encodeproject.org/experiments/ENCSR793HVL/
***************
biological replicate number: 1
technical replicate number: 1
description: E2F8 ChIP-seq on human GM12878
experiment encode accession: ENCSR793HVL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB649UXL
size range: 450-650

value: adult

value: ENCBS488GLI at ENCODE; https://www.encodeproject.org/ENCBS488GLI/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from HepG2 (ENCLB213JIM)

description:
https://www.encodeproject.org/experiments/ENCSR792MZV/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR792MZV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB213JIM

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-MYRF

value: cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS624ZVR at ENCODE; https://www.encodeproject.org/ENCBS624ZVR/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB664GQC)

description:
https://www.encodeproject.org/experiments/ENCSR797SWM/
***************
biological replicate number: 3
technical replicate number: 1
description: MITF ChIP-seq on human K562
experiment encode accession: ENCSR797SWM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB664GQC
size range: 450-650

value: MITF

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS994WPS at ENCODE; https://www.encodeproject.org/ENCBS994WPS/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HepG2 (ENCLB160WAO)

description:
https://www.encodeproject.org/experiments/ENCSR485OYR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR485OYR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-12
lab: Richard Myers, HAIB
library encode accession: ENCLB160WAO

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-ZBTB25

value: child

value: ENCBS008MGO at ENCODE; https://www.encodeproject.org/ENCBS008MGO/


title: ChIP-seq from K562 (ENCLB246JZB)

description:
https://www.encodeproject.org/experiments/ENCSR792IYC/
***************
biological replicate number: 2
technical replicate number: 1
description: BCLAF1 ChIP-seq on human K562
experiment encode accession: ENCSR792IYC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB246JZB
size range: 450-650

value: cell line

value: adult

value: female

value: Michael Snyder, Stanford

value: ENCBS352MRW at ENCODE; https://www.encodeproject.org/ENCBS352MRW/


title: ChIP-seq from HEK293 (ENCLB518AQG)

description:
https://www.encodeproject.org/experiments/ENCSR283DOU/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF660 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR283DOU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB518AQG
size range: 450-650

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS503WXT at ENCODE; https://www.encodeproject.org/ENCBS503WXT/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from K562 (ENCLB660CGZ)

description:
https://www.encodeproject.org/experiments/ENCSR792IYC/
***************
biological replicate number: 1
technical replicate number: 1
description: BCLAF1 ChIP-seq on human K562
experiment encode accession: ENCSR792IYC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB660CGZ
size range: 450-650

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS387VPF at ENCODE; https://www.encodeproject.org/ENCBS387VPF/


title: ChIP-seq from HepG2 (ENCLB862IFT)

description:
https://www.encodeproject.org/experiments/ENCSR792MZV/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR792MZV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB862IFT

value: male

value: hepatocellular carcinoma

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS848JRJ at ENCODE; https://www.encodeproject.org/ENCBS848JRJ/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HEK293 (ENCLB697FAE)

description:
https://www.encodeproject.org/experiments/ENCSR242BGR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF770 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR242BGR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-01-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB697FAE
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-ZNF770 originated from HEK293

value: cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF770 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: ENCBS894HWQ at ENCODE; https://www.encodeproject.org/ENCBS894HWQ/


title: ChIP-seq from K562 (ENCLB092EUT)

description:
https://www.encodeproject.org/experiments/ENCSR241LIH/
***************
biological replicate number: 2
technical replicate number: 1
description: AFF1 ChIP-seq on human K562
experiment encode accession: ENCSR241LIH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB092EUT
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: ENCBS603CUX at ENCODE; https://www.encodeproject.org/ENCBS603CUX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from MCF-7 (ENCLB329NCM)

description:
https://www.encodeproject.org/experiments/ENCSR785UCD/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF8 ChIP-seq on human MCF-7
experiment encode accession: ENCSR785UCD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB329NCM
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS868OVR at ENCODE; https://www.encodeproject.org/ENCBS868OVR/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from HEK293 (ENCLB119SMJ)

description:
https://www.encodeproject.org/experiments/ENCSR242BGR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF770 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR242BGR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-01-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB119SMJ
size range: 450-650

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS147ZNT at ENCODE; https://www.encodeproject.org/ENCBS147ZNT/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from MCF-7 (ENCLB069QCF)

description:
https://www.encodeproject.org/experiments/ENCSR785UCD/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF8 ChIP-seq on human MCF-7
experiment encode accession: ENCSR785UCD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB069QCF
size range: 450-650

value: cell line

value: female

value: Michael Snyder, Stanford

value: ENCBS773JGQ at ENCODE; https://www.encodeproject.org/ENCBS773JGQ/


title: ChIP-seq from esophagus muscularis mucosa (ENCLB216EPB)

description:
https://www.encodeproject.org/experiments/ENCSR240SYZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Wed Sep 07 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR240SYZ
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB216EPB

source_name: Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)

value: Control

value: esophagus muscularis mucosa

value: tissue

value: Richard Myers, HAIB

value: 53 year

value: adult

value: ENCBS078KRE at ENCODE; https://www.encodeproject.org/ENCBS078KRE/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/cfd92841-5b08-4c14-8e0b-4d4f6420f799/@@download/attachment/83388.svs


title: ChIP-seq from suprapubic skin (ENCLB022DIE)

description:
https://www.encodeproject.org/experiments/ENCSR308RWM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human suprapubic skin
experiment encode accession: ENCSR308RWM
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB022DIE
size range: 450-650

source_name: Homo sapiens female adult (53 years) suprapubic skin tissue

value: suprapubic skin

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: ENCBS119VMU at ENCODE; https://www.encodeproject.org/ENCBS119VMU/


title: 160217_Prmt5_ff: Prmt5-fl/fl_Replicate 2

status: Public on Mar 03 2019

city: Singapore

first: Ying

last: Li

state: --- Select a state ---

address: 14 Medical Dr, Singapore

country: Singapore

institute: Cancer Science Institute of Singapore

library_source: transcriptomic

data_processing:
Reads of RNA-seq data were mapped to mouse mm10 genome by STAR aligner using default parameters
Mapped reads number of each gene were used to identify gene expression by featureCounts using default parameters for paired-end data
Gene expression counts were further normalized among samples based on the Cross-Correlation method
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text file for gene exprssion of RNA-seq

molecule: total RNA

organism: Mus musculus

source_name: Hematopoietic stem cells

extract_protocol:
Trizol reagent (Invitrogen) was used with the following modifications: phase separation was repeated to minimize gDNA carryover, ethachinmate (Wako) was used to facilitate RNA precipitation, and RNA wash was repeated to minimize carryover of salts/organic contaminants.
SMART-Seq v4 Ultra Low Input RNA Kit for Sequencing (Takara Bio) was used for cDNA synthesis and amplification of mRNA. Library preparation was performed using Nextera® XT DNA Library Preparation Kit (Illumina).

tag: strain

tag: genotype

tag: tissue

value: Hematopoietic stem cells (HSCs)


title: ChIP-seq from K562 (ENCLB086HWN)

description:
https://www.encodeproject.org/experiments/ENCSR241LIH/
***************
biological replicate number: 1
technical replicate number: 1
description: AFF1 ChIP-seq on human K562
experiment encode accession: ENCSR241LIH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2018-01-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB086HWN
size range: 450-650

value: cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: chronic myelogenous leukemia (CML)

value: ENCBS207UAM at ENCODE; https://www.encodeproject.org/ENCBS207UAM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HepG2 (ENCLB290FHJ)

description:
https://www.encodeproject.org/experiments/ENCSR235OVI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR235OVI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB290FHJ

source_name: Homo sapiens HepG2 cell line genetically modified (insertion) using CRISPR targeting 3xFLAG-NFKBIZ

value: male

value: hepatocellular carcinoma

value: child

value: 15 year

value: Richard Myers, HAIB

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCBS445FYN at ENCODE; https://www.encodeproject.org/ENCBS445FYN/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; https://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HepG2 (ENCLB972FTZ)

description:
https://www.encodeproject.org/experiments/ENCSR235OVI/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR235OVI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2018-02-10
lab: Richard Myers, HAIB
library encode accession: ENCLB972FTZ

value: ENCBS465JTM at ENCODE; https://www.encodeproject.org/ENCBS465JTM/


title: ChIP-seq from breast epithelium (ENCLB409RMK)

description:
https://www.encodeproject.org/experiments/ENCSR237CQV/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Fri Nov 11 2016 00:00:00 GMT-0600 (CST)
experiment encode accession: ENCSR237CQV
assay title: ChIP-seq
assembly: GRCh38, hg19
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB409RMK

source_name: Homo sapiens breast epithelium tissue female adult (51 year)

value: Control

value: breast epithelium

value: tissue

value: female

value: 51 year

value: adult

value: ENCBS605KKW at ENCODE; https://www.encodeproject.org/ENCBS605KKW/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/4c46760c-02dc-44f9-9cfd-998541ed88be/@@download/attachment/84271.svs


title: ChIP-seq from A549 (ENCLB372JXA)

description:
https://www.encodeproject.org/experiments/ENCSR294JWV/
***************
biological replicate number: 2
technical replicate number: 1
description: ZFP36 ChIP-seq on human A549
experiment encode accession: ENCSR294JWV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB372JXA
size range: 450-650

value: cell line

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: 58 year

value: male

value: Michael Snyder, Stanford

value: ENCBS848SUF at ENCODE; https://www.encodeproject.org/ENCBS848SUF/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from K562 (ENCLB892ZMY)

description:
https://www.encodeproject.org/experiments/ENCSR219BXP/
***************
biological replicate number: 1
technical replicate number: 1
description: DPF2 ChIP-seq on human K562
experiment encode accession: ENCSR219BXP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2017-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB892ZMY
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS839CNN at ENCODE; https://www.encodeproject.org/ENCBS839CNN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HEK293 (ENCLB671MXW)

description:
https://www.encodeproject.org/experiments/ENCSR780ESQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-KLF14 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR780ESQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-01-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB671MXW
size range: 450-650

source_name: Homo sapiens HEK293 cell line genetically modified (insertion) using site-specific recombination targeting eGFP-KLF14 originated from HEK293

value: HEK293 cell line stably expressing N-terminal tagged eGFP-KLF14 under the control of a CMV promoter.

value: female

value: unknown

value: embryonic

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/

value: ENCBS949DFI at ENCODE; https://www.encodeproject.org/ENCBS949DFI/

value: ENCODE dbxrefs Cellosaurus CVCL_0045; https://web.expasy.org/cellosaurus/CVCL_0045


title: ChIP-seq from HEK293 (ENCLB009GIZ)

description:
https://www.encodeproject.org/experiments/ENCSR780ESQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-KLF14 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR780ESQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR598OXI, ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2018-01-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB009GIZ
size range: 450-650

value: cell line

value: Michael Snyder, Stanford

value: ENCBS348BZR at ENCODE; https://www.encodeproject.org/ENCBS348BZR/