title: CHC3651T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3649T

status: Public on Apr 05 2019

type: RNA

city: Paris

first: Sandrine

last: Imbeaud

address: 15 rue de l'Ecole de Médecine

department: INSERM UMRS1138-EQUIPE 28, Sorbonne Université-Inserm-Université de Paris

country: France

institute: Centre de Recherche des Cordeliers

description:
MUTHEC
test

data_processing: Expression level (Ct values) was assessed using the Fluidigm Real-Time PCR Analysis software (4.1.3). Gene expression data were expressed using the 2-DDCt method relative to ribosomal 18S (R18S) and the expression level of the corresponding gene in normal liver samples. Final results were reported in 2- delta delta CT representing fold change compared to normal livers

label: taqman assay

molecule: total RNA

organism: Homo sapiens

source_name: liver tumor

label_protocol: We performed reverse transcription of 500 ng of total RNA using the High-Capacity Transcription Kit (Life Technologies) and assess gene expression using TaqMan predesigned assays (Life Technologies) on Fluidigm 96 dynamic arrays with the Bio-Mark Real-Time PCR system.

extract_protocol: Total RNA from frozen surgical samples was extracted using Maxwell 16 LEV simplyRNA Tissue kit (Promega, cat#AS1280) and from frozen biopsies using AllPrep DNA/RNA/miRNA Universal Kit (QIAGEN, cat #80224) according to the manufacturer’s instructions. DNAs were quantified using a Qubit 2.0 fluorometer (Qubit dsDNA BR assay kit, LifeTechnologies – ThermoFisher Scientifics) and quality was assessed as previously described. RNA was quantified using a spectrophotometer at 260nm (Nanodrop) and quality of RNA was controlled by Qiaxcell gel electrophoresis (Qiagen).

tag: gender

value: M

tag: age

tag: diagnosis

value: HCC

tag: type

value: ADVANCED

value: no

tag: alcohol

value: yes

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

value: C

tag: serumalphafoeto (ui)

tag: tert status

value: NM

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3647T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3648T

description:
MUTHEC
test

tag: gender

value: F

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: SuRE45, library2, transfection in K562, rep3

type: SRA

city: Amsterdam

first: Bas

last: van Steensel

address: Plesmanlaan 121

department: division of Molecular Biology

country: Netherlands

institute: Netherlands Cancer Institute

description:
SuRE_45_L2_K562_R3
PolyA RNA
Processed data files:
SuRE45_K562_lib1-lib2_norm.bw
SuRE45_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE45_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE45_2-counts_chr1.txt.gz
SuRE45_2-counts_chr2.txt.gz
SuRE45_2-counts_chr3.txt.gz
SuRE45_2-counts_chr4.txt.gz
SuRE45_2-counts_chr5.txt.gz
SuRE45_2-counts_chr6.txt.gz
SuRE45_2-counts_chr7.txt.gz
SuRE45_2-counts_chr8.txt.gz
SuRE45_2-counts_chr9.txt.gz
SuRE45_2-counts_chr10.txt.gz
SuRE45_2-counts_chr11.txt.gz
SuRE45_2-counts_chr12.txt.gz
SuRE45_2-counts_chr13.txt.gz
SuRE45_2-counts_chr14.txt.gz
SuRE45_2-counts_chr15.txt.gz
SuRE45_2-counts_chr16.txt.gz
SuRE45_2-counts_chr17.txt.gz
SuRE45_2-counts_chr18.txt.gz
SuRE45_2-counts_chr19.txt.gz
SuRE45_2-counts_chr20.txt.gz
SuRE45_2-counts_chr21.txt.gz
SuRE45_2-counts_chr22.txt.gz
SuRE45_2-counts_chrX.txt.gz

library_source: transcriptomic

data_processing:
Basecalling and filtering were performed using standard software of the Illumina HiSeq 2500 or Illumina HiSeq-X10.
For polyA-RNA samples, the barcode sequence was extracted from the read (using cutadapt and custom scripts) and counted.
For gDNA samples, the barcode and the gDNA was extracted from the paired-end reads (using cutadapt and custom scripts). gDNA was then aligned to the reference genome (using bowtie2). Barcodes were then associated with genomic regions.
For each region identified in the gDNA data a normalized SuRE expression value was calculated as the ratio of the total readcount in the RNA samples and the total readcount in the gdNA library samples.
Each region was annotated with SNP locations and base identities extract from the corresponding reads.
Genome_build: hg19 (GRCh37)
Supplementary_files_format_and_content: Bigwig files contain normalized SuRE expression tracks. Tabular txt files contain location, SNP annotation of all detected library element plus associated counts in gDNA library samples and RNA samples. All processed data files were generated using custom scripts and std. tools.

source_name: cell line; K562

growth_protocol: K562 (ATCC® CCL-243™) and HepG2 (#HB 8065; ATCC) were cultured according to supplier's protocol.

extract_protocol:
To find out which barcodes were associated with which genomic fragments, we digested 4 µg SuRE library with I-CeuI (#R0699S; NEB), followed by magnetic bead purification (1:1 ratio beads:DNA solution). Of this, 2 µg was self-ligated overnight at 16 °C in a total volume of 2 ml (#10799009001 Roche), and purified using phenol-chloroform extraction and isopropanol precipitation. This material was treated with 25 units of Plasmid-Safe™ ATP-Dependent DNase for 1 hour and purified again with phenol-chloroform and isopropanol precipitation. To facilitate PCR, the resulting mini-circles were linearized by digesting with I-SceI (#R0694S; NEB) in a volume of 25 µl. Finally, 8 cycles of PCR (1¢ at 98°C, 10x (15¢ at 98°,15¢ at 60°, 20¢ at 72°)) with KAPA high-fidelity DNA Polymerase (#KE2502; KAPA biosystems) were performed on 1/10th of the I-SceI digested material using primers 151AR (containing the S1 and p5 adapter) and (index variants of) 117JvA (containing the S2, index and p7 adapter). The PCR product was bead purified and subjected to high-throughput paired-end sequencing on the Illumina HiseqX10 platform.
PolyA RNA was divided into 10 µl reactions containing 500 ng RNA and DNase treated with 10 units for 30 minutes (#04716728001; Roche) and DNAse was inactivated by addition of 1µl of 25mM EDTA and incubation at 70ºC for 10 minutes. Next, cDNA was produced by first adding 1 µl of 10 mM gene specific primer targeting the GFP ORF (247JvA) and 1 µl dNTP (10mM each) and incubating for 5 minutes at 65°C. Then 4 µl of RT buffer, 20 units RNAse inhibitor (#EO0381; ThermoFisher Scientific), 200 units of Maxima reverse transcriptase (#EP0743; ThermoFisher Scientific) and 2.5 µl water was added and the reaction was incubated for 30 minutes at 50°C followed by heat-inactivation at 85° for 5 minutes. Per biological replicate, 20-30 reactions were done in parallel. Each 20 µl reaction was then PCR amplified (1’ 96 °C, 20x (15’’ 96 °C, 15’’ 60 °C, 15’’ 72 °C)) in a 100 µl reaction with MyTaq™ Red Mix and primers 151AR (containing the S1 and p5 adapter) and (index variants of) 211JvA (containing the S2, index and p7 adapter) for 21 cycles. Reactions were then pooled and 500 µl was purified using CleanPCR beads (#CPCR-0050; GC biotech) and subjected to single read 50 bp high throughput sequencing on an Illumina HiSeq2500.

treatment_protocol: For K562, 3 biological replicates (i.e. transfection replicates) were done for each of the 8 SuRE libraries separately, with 100 million cells and harvested after 24 hours. Cells were transiently transfected per 5 million using 10ug of plasmid and using Amaxa Nucleofector II, program T-016 and nucleofection buffer as published previously (Hendel, A. et al., Cell Rep 7, 293-305, 2014). HepG2 were transfected in the same manner as K562 cells except that 2 biological replicates were done, program T-028 was used for nucleofection, 7.5 µg plasmid was used for each 5 million cells, and cells were harvested 48 hours after transfection. One hundred million cells were transfected for each replicate.

tag: library source cell line

tag: transfected into cell line


title: SuRE45, library2, transfection in HEPG2, rep2

description:
SuRE_45_L2_HEPG2_R2
PolyA RNA
Processed data files:
SuRE45_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE45_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE45_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE45_2-counts_chr1.txt.gz
SuRE45_2-counts_chr2.txt.gz
SuRE45_2-counts_chr3.txt.gz
SuRE45_2-counts_chr4.txt.gz
SuRE45_2-counts_chr5.txt.gz
SuRE45_2-counts_chr6.txt.gz
SuRE45_2-counts_chr7.txt.gz
SuRE45_2-counts_chr8.txt.gz
SuRE45_2-counts_chr9.txt.gz
SuRE45_2-counts_chr10.txt.gz
SuRE45_2-counts_chr11.txt.gz
SuRE45_2-counts_chr12.txt.gz
SuRE45_2-counts_chr13.txt.gz
SuRE45_2-counts_chr14.txt.gz
SuRE45_2-counts_chr15.txt.gz
SuRE45_2-counts_chr16.txt.gz
SuRE45_2-counts_chr17.txt.gz
SuRE45_2-counts_chr18.txt.gz
SuRE45_2-counts_chr19.txt.gz
SuRE45_2-counts_chr20.txt.gz
SuRE45_2-counts_chr21.txt.gz
SuRE45_2-counts_chr22.txt.gz
SuRE45_2-counts_chrX.txt.gz

source_name: cell line; HepG2


title: SuRE45, library2, transfection in K562, rep1

description:
SuRE_45_L2_K562_R1
PolyA RNA
Processed data files:
SuRE45_K562_lib1-lib2_norm.bw
SuRE45_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE45_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE45_2-counts_chr1.txt.gz
SuRE45_2-counts_chr2.txt.gz
SuRE45_2-counts_chr3.txt.gz
SuRE45_2-counts_chr4.txt.gz
SuRE45_2-counts_chr5.txt.gz
SuRE45_2-counts_chr6.txt.gz
SuRE45_2-counts_chr7.txt.gz
SuRE45_2-counts_chr8.txt.gz
SuRE45_2-counts_chr9.txt.gz
SuRE45_2-counts_chr10.txt.gz
SuRE45_2-counts_chr11.txt.gz
SuRE45_2-counts_chr12.txt.gz
SuRE45_2-counts_chr13.txt.gz
SuRE45_2-counts_chr14.txt.gz
SuRE45_2-counts_chr15.txt.gz
SuRE45_2-counts_chr16.txt.gz
SuRE45_2-counts_chr17.txt.gz
SuRE45_2-counts_chr18.txt.gz
SuRE45_2-counts_chr19.txt.gz
SuRE45_2-counts_chr20.txt.gz
SuRE45_2-counts_chr21.txt.gz
SuRE45_2-counts_chr22.txt.gz
SuRE45_2-counts_chrX.txt.gz


title: SuRE45, library2, transfection in K562, rep2

description:
SuRE_45_L2_K562_R2
PolyA RNA
Processed data files:
SuRE45_K562_lib1-lib2_norm.bw
SuRE45_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE45_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE45_2-counts_chr1.txt.gz
SuRE45_2-counts_chr2.txt.gz
SuRE45_2-counts_chr3.txt.gz
SuRE45_2-counts_chr4.txt.gz
SuRE45_2-counts_chr5.txt.gz
SuRE45_2-counts_chr6.txt.gz
SuRE45_2-counts_chr7.txt.gz
SuRE45_2-counts_chr8.txt.gz
SuRE45_2-counts_chr9.txt.gz
SuRE45_2-counts_chr10.txt.gz
SuRE45_2-counts_chr11.txt.gz
SuRE45_2-counts_chr12.txt.gz
SuRE45_2-counts_chr13.txt.gz
SuRE45_2-counts_chr14.txt.gz
SuRE45_2-counts_chr15.txt.gz
SuRE45_2-counts_chr16.txt.gz
SuRE45_2-counts_chr17.txt.gz
SuRE45_2-counts_chr18.txt.gz
SuRE45_2-counts_chr19.txt.gz
SuRE45_2-counts_chr20.txt.gz
SuRE45_2-counts_chr21.txt.gz
SuRE45_2-counts_chr22.txt.gz
SuRE45_2-counts_chrX.txt.gz


title: SuRE45, library2, transfection in HEPG2, rep1

description:
SuRE_45_L2_HEPG2_R1
PolyA RNA
Processed data files:
SuRE45_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE45_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE45_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE45_2-counts_chr1.txt.gz
SuRE45_2-counts_chr2.txt.gz
SuRE45_2-counts_chr3.txt.gz
SuRE45_2-counts_chr4.txt.gz
SuRE45_2-counts_chr5.txt.gz
SuRE45_2-counts_chr6.txt.gz
SuRE45_2-counts_chr7.txt.gz
SuRE45_2-counts_chr8.txt.gz
SuRE45_2-counts_chr9.txt.gz
SuRE45_2-counts_chr10.txt.gz
SuRE45_2-counts_chr11.txt.gz
SuRE45_2-counts_chr12.txt.gz
SuRE45_2-counts_chr13.txt.gz
SuRE45_2-counts_chr14.txt.gz
SuRE45_2-counts_chr15.txt.gz
SuRE45_2-counts_chr16.txt.gz
SuRE45_2-counts_chr17.txt.gz
SuRE45_2-counts_chr18.txt.gz
SuRE45_2-counts_chr19.txt.gz
SuRE45_2-counts_chr20.txt.gz
SuRE45_2-counts_chr21.txt.gz
SuRE45_2-counts_chr22.txt.gz
SuRE45_2-counts_chrX.txt.gz


title: CHC3645T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3644T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

value: Splice_Site g.chr16:359972C>T

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

value: Splice_Site g.chr4:74284029G>C

tag: apob status


title: SuRE45, library1, transfection in K562, rep3

description:
SuRE_45_L1_K562_R3
PolyA RNA
Processed data files:
SuRE45_K562_lib1-lib2_norm.bw
SuRE45_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE45_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE45_1-counts_chr1.txt.gz
SuRE45_1-counts_chr2.txt.gz
SuRE45_1-counts_chr3.txt.gz
SuRE45_1-counts_chr4.txt.gz
SuRE45_1-counts_chr5.txt.gz
SuRE45_1-counts_chr6.txt.gz
SuRE45_1-counts_chr7.txt.gz
SuRE45_1-counts_chr8.txt.gz
SuRE45_1-counts_chr9.txt.gz
SuRE45_1-counts_chr10.txt.gz
SuRE45_1-counts_chr11.txt.gz
SuRE45_1-counts_chr12.txt.gz
SuRE45_1-counts_chr13.txt.gz
SuRE45_1-counts_chr14.txt.gz
SuRE45_1-counts_chr15.txt.gz
SuRE45_1-counts_chr16.txt.gz
SuRE45_1-counts_chr17.txt.gz
SuRE45_1-counts_chr18.txt.gz
SuRE45_1-counts_chr19.txt.gz
SuRE45_1-counts_chr20.txt.gz
SuRE45_1-counts_chr21.txt.gz
SuRE45_1-counts_chr22.txt.gz
SuRE45_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3914T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: SuRE45, library1, transfection in K562, rep2

description:
SuRE_45_L1_K562_R2
PolyA RNA
Processed data files:
SuRE45_K562_lib1-lib2_norm.bw
SuRE45_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE45_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE45_1-counts_chr1.txt.gz
SuRE45_1-counts_chr2.txt.gz
SuRE45_1-counts_chr3.txt.gz
SuRE45_1-counts_chr4.txt.gz
SuRE45_1-counts_chr5.txt.gz
SuRE45_1-counts_chr6.txt.gz
SuRE45_1-counts_chr7.txt.gz
SuRE45_1-counts_chr8.txt.gz
SuRE45_1-counts_chr9.txt.gz
SuRE45_1-counts_chr10.txt.gz
SuRE45_1-counts_chr11.txt.gz
SuRE45_1-counts_chr12.txt.gz
SuRE45_1-counts_chr13.txt.gz
SuRE45_1-counts_chr14.txt.gz
SuRE45_1-counts_chr15.txt.gz
SuRE45_1-counts_chr16.txt.gz
SuRE45_1-counts_chr17.txt.gz
SuRE45_1-counts_chr18.txt.gz
SuRE45_1-counts_chr19.txt.gz
SuRE45_1-counts_chr20.txt.gz
SuRE45_1-counts_chr21.txt.gz
SuRE45_1-counts_chr22.txt.gz
SuRE45_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: SuRE45, library1, transfection in HEPG2, rep1

description:
SuRE_45_L1_HEPG2_R1
PolyA RNA
Processed data files:
SuRE45_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE45_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE45_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE45_1-counts_chr1.txt.gz
SuRE45_1-counts_chr2.txt.gz
SuRE45_1-counts_chr3.txt.gz
SuRE45_1-counts_chr4.txt.gz
SuRE45_1-counts_chr5.txt.gz
SuRE45_1-counts_chr6.txt.gz
SuRE45_1-counts_chr7.txt.gz
SuRE45_1-counts_chr8.txt.gz
SuRE45_1-counts_chr9.txt.gz
SuRE45_1-counts_chr10.txt.gz
SuRE45_1-counts_chr11.txt.gz
SuRE45_1-counts_chr12.txt.gz
SuRE45_1-counts_chr13.txt.gz
SuRE45_1-counts_chr14.txt.gz
SuRE45_1-counts_chr15.txt.gz
SuRE45_1-counts_chr16.txt.gz
SuRE45_1-counts_chr17.txt.gz
SuRE45_1-counts_chr18.txt.gz
SuRE45_1-counts_chr19.txt.gz
SuRE45_1-counts_chr20.txt.gz
SuRE45_1-counts_chr21.txt.gz
SuRE45_1-counts_chr22.txt.gz
SuRE45_1-counts_chrX.txt.gz


title: CHC3641T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

value: B

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3643T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: SuRE45, library1, transfection in K562, rep1

description:
SuRE_45_L1_K562_R1
PolyA RNA
Processed data files:
SuRE45_K562_lib1-lib2_norm.bw
SuRE45_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE45_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE45_1-counts_chr1.txt.gz
SuRE45_1-counts_chr2.txt.gz
SuRE45_1-counts_chr3.txt.gz
SuRE45_1-counts_chr4.txt.gz
SuRE45_1-counts_chr5.txt.gz
SuRE45_1-counts_chr6.txt.gz
SuRE45_1-counts_chr7.txt.gz
SuRE45_1-counts_chr8.txt.gz
SuRE45_1-counts_chr9.txt.gz
SuRE45_1-counts_chr10.txt.gz
SuRE45_1-counts_chr11.txt.gz
SuRE45_1-counts_chr12.txt.gz
SuRE45_1-counts_chr13.txt.gz
SuRE45_1-counts_chr14.txt.gz
SuRE45_1-counts_chr15.txt.gz
SuRE45_1-counts_chr16.txt.gz
SuRE45_1-counts_chr17.txt.gz
SuRE45_1-counts_chr18.txt.gz
SuRE45_1-counts_chr19.txt.gz
SuRE45_1-counts_chr20.txt.gz
SuRE45_1-counts_chr21.txt.gz
SuRE45_1-counts_chr22.txt.gz
SuRE45_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3639T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: SuRE44, library2, transfection in HEPG2, rep2

description:
SuRE_44_L2_HEPG2_R2
PolyA RNA
Processed data files:
SuRE44_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE44_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE44_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE44_2-counts_chr1.txt.gz
SuRE44_2-counts_chr2.txt.gz
SuRE44_2-counts_chr3.txt.gz
SuRE44_2-counts_chr4.txt.gz
SuRE44_2-counts_chr5.txt.gz
SuRE44_2-counts_chr6.txt.gz
SuRE44_2-counts_chr7.txt.gz
SuRE44_2-counts_chr8.txt.gz
SuRE44_2-counts_chr9.txt.gz
SuRE44_2-counts_chr10.txt.gz
SuRE44_2-counts_chr11.txt.gz
SuRE44_2-counts_chr12.txt.gz
SuRE44_2-counts_chr13.txt.gz
SuRE44_2-counts_chr14.txt.gz
SuRE44_2-counts_chr15.txt.gz
SuRE44_2-counts_chr16.txt.gz
SuRE44_2-counts_chr17.txt.gz
SuRE44_2-counts_chr18.txt.gz
SuRE44_2-counts_chr19.txt.gz
SuRE44_2-counts_chr20.txt.gz
SuRE44_2-counts_chr21.txt.gz
SuRE44_2-counts_chr22.txt.gz
SuRE44_2-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3638T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: SuRE44, library2, transfection in HEPG2, rep1

description:
SuRE_44_L2_HEPG2_R1
PolyA RNA
Processed data files:
SuRE44_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE44_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE44_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE44_2-counts_chr1.txt.gz
SuRE44_2-counts_chr2.txt.gz
SuRE44_2-counts_chr3.txt.gz
SuRE44_2-counts_chr4.txt.gz
SuRE44_2-counts_chr5.txt.gz
SuRE44_2-counts_chr6.txt.gz
SuRE44_2-counts_chr7.txt.gz
SuRE44_2-counts_chr8.txt.gz
SuRE44_2-counts_chr9.txt.gz
SuRE44_2-counts_chr10.txt.gz
SuRE44_2-counts_chr11.txt.gz
SuRE44_2-counts_chr12.txt.gz
SuRE44_2-counts_chr13.txt.gz
SuRE44_2-counts_chr14.txt.gz
SuRE44_2-counts_chr15.txt.gz
SuRE44_2-counts_chr16.txt.gz
SuRE44_2-counts_chr17.txt.gz
SuRE44_2-counts_chr18.txt.gz
SuRE44_2-counts_chr19.txt.gz
SuRE44_2-counts_chr20.txt.gz
SuRE44_2-counts_chr21.txt.gz
SuRE44_2-counts_chr22.txt.gz
SuRE44_2-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3637T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: SuRE44, library2, transfection in K562, rep3

description:
SuRE_44_L2_K562_R3
PolyA RNA
Processed data files:
SuRE44_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE44_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE44_K562_lib1-lib2_norm_LP181101.bw
SuRE44_2-counts_chr1.txt.gz
SuRE44_2-counts_chr2.txt.gz
SuRE44_2-counts_chr3.txt.gz
SuRE44_2-counts_chr4.txt.gz
SuRE44_2-counts_chr5.txt.gz
SuRE44_2-counts_chr6.txt.gz
SuRE44_2-counts_chr7.txt.gz
SuRE44_2-counts_chr8.txt.gz
SuRE44_2-counts_chr9.txt.gz
SuRE44_2-counts_chr10.txt.gz
SuRE44_2-counts_chr11.txt.gz
SuRE44_2-counts_chr12.txt.gz
SuRE44_2-counts_chr13.txt.gz
SuRE44_2-counts_chr14.txt.gz
SuRE44_2-counts_chr15.txt.gz
SuRE44_2-counts_chr16.txt.gz
SuRE44_2-counts_chr17.txt.gz
SuRE44_2-counts_chr18.txt.gz
SuRE44_2-counts_chr19.txt.gz
SuRE44_2-counts_chr20.txt.gz
SuRE44_2-counts_chr21.txt.gz
SuRE44_2-counts_chr22.txt.gz
SuRE44_2-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3636T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

value: FA

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3640T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3646T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: SuRE44, library2, transfection in K562, rep2

description:
SuRE_44_L2_K562_R2
PolyA RNA
Processed data files:
SuRE44_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE44_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE44_K562_lib1-lib2_norm_LP181101.bw
SuRE44_2-counts_chr1.txt.gz
SuRE44_2-counts_chr2.txt.gz
SuRE44_2-counts_chr3.txt.gz
SuRE44_2-counts_chr4.txt.gz
SuRE44_2-counts_chr5.txt.gz
SuRE44_2-counts_chr6.txt.gz
SuRE44_2-counts_chr7.txt.gz
SuRE44_2-counts_chr8.txt.gz
SuRE44_2-counts_chr9.txt.gz
SuRE44_2-counts_chr10.txt.gz
SuRE44_2-counts_chr11.txt.gz
SuRE44_2-counts_chr12.txt.gz
SuRE44_2-counts_chr13.txt.gz
SuRE44_2-counts_chr14.txt.gz
SuRE44_2-counts_chr15.txt.gz
SuRE44_2-counts_chr16.txt.gz
SuRE44_2-counts_chr17.txt.gz
SuRE44_2-counts_chr18.txt.gz
SuRE44_2-counts_chr19.txt.gz
SuRE44_2-counts_chr20.txt.gz
SuRE44_2-counts_chr21.txt.gz
SuRE44_2-counts_chr22.txt.gz
SuRE44_2-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3634T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: SuRE45, library1, transfection in HEPG2, rep2

description:
SuRE_45_L1_HEPG2_R2
PolyA RNA
Processed data files:
SuRE45_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE45_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE45_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE45_1-counts_chr1.txt.gz
SuRE45_1-counts_chr2.txt.gz
SuRE45_1-counts_chr3.txt.gz
SuRE45_1-counts_chr4.txt.gz
SuRE45_1-counts_chr5.txt.gz
SuRE45_1-counts_chr6.txt.gz
SuRE45_1-counts_chr7.txt.gz
SuRE45_1-counts_chr8.txt.gz
SuRE45_1-counts_chr9.txt.gz
SuRE45_1-counts_chr10.txt.gz
SuRE45_1-counts_chr11.txt.gz
SuRE45_1-counts_chr12.txt.gz
SuRE45_1-counts_chr13.txt.gz
SuRE45_1-counts_chr14.txt.gz
SuRE45_1-counts_chr15.txt.gz
SuRE45_1-counts_chr16.txt.gz
SuRE45_1-counts_chr17.txt.gz
SuRE45_1-counts_chr18.txt.gz
SuRE45_1-counts_chr19.txt.gz
SuRE45_1-counts_chr20.txt.gz
SuRE45_1-counts_chr21.txt.gz
SuRE45_1-counts_chr22.txt.gz
SuRE45_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: SuRE44, library1, transfection in HEPG2, rep2

description:
SuRE_44_L1_HEPG2_R2
PolyA RNA
Processed data files:
SuRE44_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE44_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE44_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE44_1-counts_chr1.txt.gz
SuRE44_1-counts_chr2.txt.gz
SuRE44_1-counts_chr3.txt.gz
SuRE44_1-counts_chr4.txt.gz
SuRE44_1-counts_chr5.txt.gz
SuRE44_1-counts_chr6.txt.gz
SuRE44_1-counts_chr7.txt.gz
SuRE44_1-counts_chr8.txt.gz
SuRE44_1-counts_chr9.txt.gz
SuRE44_1-counts_chr10.txt.gz
SuRE44_1-counts_chr11.txt.gz
SuRE44_1-counts_chr12.txt.gz
SuRE44_1-counts_chr13.txt.gz
SuRE44_1-counts_chr14.txt.gz
SuRE44_1-counts_chr15.txt.gz
SuRE44_1-counts_chr16.txt.gz
SuRE44_1-counts_chr17.txt.gz
SuRE44_1-counts_chr18.txt.gz
SuRE44_1-counts_chr19.txt.gz
SuRE44_1-counts_chr20.txt.gz
SuRE44_1-counts_chr21.txt.gz
SuRE44_1-counts_chr22.txt.gz
SuRE44_1-counts_chrX.txt.gz


title: SuRE44, library1, transfection in HEPG2, rep1

description:
SuRE_44_L1_HEPG2_R1
PolyA RNA
Processed data files:
SuRE44_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE44_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE44_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE44_1-counts_chr1.txt.gz
SuRE44_1-counts_chr2.txt.gz
SuRE44_1-counts_chr3.txt.gz
SuRE44_1-counts_chr4.txt.gz
SuRE44_1-counts_chr5.txt.gz
SuRE44_1-counts_chr6.txt.gz
SuRE44_1-counts_chr7.txt.gz
SuRE44_1-counts_chr8.txt.gz
SuRE44_1-counts_chr9.txt.gz
SuRE44_1-counts_chr10.txt.gz
SuRE44_1-counts_chr11.txt.gz
SuRE44_1-counts_chr12.txt.gz
SuRE44_1-counts_chr13.txt.gz
SuRE44_1-counts_chr14.txt.gz
SuRE44_1-counts_chr15.txt.gz
SuRE44_1-counts_chr16.txt.gz
SuRE44_1-counts_chr17.txt.gz
SuRE44_1-counts_chr18.txt.gz
SuRE44_1-counts_chr19.txt.gz
SuRE44_1-counts_chr20.txt.gz
SuRE44_1-counts_chr21.txt.gz
SuRE44_1-counts_chr22.txt.gz
SuRE44_1-counts_chrX.txt.gz


title: CHC3632T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3642T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: SuRE44, library1, transfection in K562, rep2

description:
SuRE_44_L1_K562_R2
PolyA RNA
Processed data files:
SuRE44_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE44_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE44_K562_lib1-lib2_norm_LP181101.bw
SuRE44_1-counts_chr1.txt.gz
SuRE44_1-counts_chr2.txt.gz
SuRE44_1-counts_chr3.txt.gz
SuRE44_1-counts_chr4.txt.gz
SuRE44_1-counts_chr5.txt.gz
SuRE44_1-counts_chr6.txt.gz
SuRE44_1-counts_chr7.txt.gz
SuRE44_1-counts_chr8.txt.gz
SuRE44_1-counts_chr9.txt.gz
SuRE44_1-counts_chr10.txt.gz
SuRE44_1-counts_chr11.txt.gz
SuRE44_1-counts_chr12.txt.gz
SuRE44_1-counts_chr13.txt.gz
SuRE44_1-counts_chr14.txt.gz
SuRE44_1-counts_chr15.txt.gz
SuRE44_1-counts_chr16.txt.gz
SuRE44_1-counts_chr17.txt.gz
SuRE44_1-counts_chr18.txt.gz
SuRE44_1-counts_chr19.txt.gz
SuRE44_1-counts_chr20.txt.gz
SuRE44_1-counts_chr21.txt.gz
SuRE44_1-counts_chr22.txt.gz
SuRE44_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: SuRE43, library2, transfection in HEPG2, rep2

description:
SuRE_43_L2_HEPG2_R2
PolyA RNA
Processed data files:
SuRE43_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE43_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE43_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE43_2-counts_chr1.txt.gz
SuRE43_2-counts_chr2.txt.gz
SuRE43_2-counts_chr3.txt.gz
SuRE43_2-counts_chr4.txt.gz
SuRE43_2-counts_chr5.txt.gz
SuRE43_2-counts_chr6.txt.gz
SuRE43_2-counts_chr7.txt.gz
SuRE43_2-counts_chr8.txt.gz
SuRE43_2-counts_chr9.txt.gz
SuRE43_2-counts_chr10.txt.gz
SuRE43_2-counts_chr11.txt.gz
SuRE43_2-counts_chr12.txt.gz
SuRE43_2-counts_chr13.txt.gz
SuRE43_2-counts_chr14.txt.gz
SuRE43_2-counts_chr15.txt.gz
SuRE43_2-counts_chr16.txt.gz
SuRE43_2-counts_chr17.txt.gz
SuRE43_2-counts_chr18.txt.gz
SuRE43_2-counts_chr19.txt.gz
SuRE43_2-counts_chr20.txt.gz
SuRE43_2-counts_chr21.txt.gz
SuRE43_2-counts_chr22.txt.gz
SuRE43_2-counts_chrX.txt.gz


title: SuRE44, library1, transfection in K562, rep1

description:
SuRE_44_L1_K562_R1
PolyA RNA
Processed data files:
SuRE44_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE44_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE44_K562_lib1-lib2_norm_LP181101.bw
SuRE44_1-counts_chr1.txt.gz
SuRE44_1-counts_chr2.txt.gz
SuRE44_1-counts_chr3.txt.gz
SuRE44_1-counts_chr4.txt.gz
SuRE44_1-counts_chr5.txt.gz
SuRE44_1-counts_chr6.txt.gz
SuRE44_1-counts_chr7.txt.gz
SuRE44_1-counts_chr8.txt.gz
SuRE44_1-counts_chr9.txt.gz
SuRE44_1-counts_chr10.txt.gz
SuRE44_1-counts_chr11.txt.gz
SuRE44_1-counts_chr12.txt.gz
SuRE44_1-counts_chr13.txt.gz
SuRE44_1-counts_chr14.txt.gz
SuRE44_1-counts_chr15.txt.gz
SuRE44_1-counts_chr16.txt.gz
SuRE44_1-counts_chr17.txt.gz
SuRE44_1-counts_chr18.txt.gz
SuRE44_1-counts_chr19.txt.gz
SuRE44_1-counts_chr20.txt.gz
SuRE44_1-counts_chr21.txt.gz
SuRE44_1-counts_chr22.txt.gz
SuRE44_1-counts_chrX.txt.gz


title: CHC3629T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: SuRE43, library2, transfection in HEPG2, rep1

description:
SuRE_43_L2_HEPG2_R1
PolyA RNA
Processed data files:
SuRE43_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE43_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE43_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE43_2-counts_chr1.txt.gz
SuRE43_2-counts_chr2.txt.gz
SuRE43_2-counts_chr3.txt.gz
SuRE43_2-counts_chr4.txt.gz
SuRE43_2-counts_chr5.txt.gz
SuRE43_2-counts_chr6.txt.gz
SuRE43_2-counts_chr7.txt.gz
SuRE43_2-counts_chr8.txt.gz
SuRE43_2-counts_chr9.txt.gz
SuRE43_2-counts_chr10.txt.gz
SuRE43_2-counts_chr11.txt.gz
SuRE43_2-counts_chr12.txt.gz
SuRE43_2-counts_chr13.txt.gz
SuRE43_2-counts_chr14.txt.gz
SuRE43_2-counts_chr15.txt.gz
SuRE43_2-counts_chr16.txt.gz
SuRE43_2-counts_chr17.txt.gz
SuRE43_2-counts_chr18.txt.gz
SuRE43_2-counts_chr19.txt.gz
SuRE43_2-counts_chr20.txt.gz
SuRE43_2-counts_chr21.txt.gz
SuRE43_2-counts_chr22.txt.gz
SuRE43_2-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3630T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3628T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3627T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3626T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: SuRE43, library2, transfection in K562, rep3

description:
SuRE_43_L2_K562_R3
PolyA RNA
Processed data files:
SuRE43_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE43_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE43_K562_lib1-lib2_norm_LP181101.bw
SuRE43_2-counts_chr1.txt.gz
SuRE43_2-counts_chr2.txt.gz
SuRE43_2-counts_chr3.txt.gz
SuRE43_2-counts_chr4.txt.gz
SuRE43_2-counts_chr5.txt.gz
SuRE43_2-counts_chr6.txt.gz
SuRE43_2-counts_chr7.txt.gz
SuRE43_2-counts_chr8.txt.gz
SuRE43_2-counts_chr9.txt.gz
SuRE43_2-counts_chr10.txt.gz
SuRE43_2-counts_chr11.txt.gz
SuRE43_2-counts_chr12.txt.gz
SuRE43_2-counts_chr13.txt.gz
SuRE43_2-counts_chr14.txt.gz
SuRE43_2-counts_chr15.txt.gz
SuRE43_2-counts_chr16.txt.gz
SuRE43_2-counts_chr17.txt.gz
SuRE43_2-counts_chr18.txt.gz
SuRE43_2-counts_chr19.txt.gz
SuRE43_2-counts_chr20.txt.gz
SuRE43_2-counts_chr21.txt.gz
SuRE43_2-counts_chr22.txt.gz
SuRE43_2-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: SuRE43, library2, transfection in K562, rep2

description:
SuRE_43_L2_K562_R2
PolyA RNA
Processed data files:
SuRE43_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE43_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE43_K562_lib1-lib2_norm_LP181101.bw
SuRE43_2-counts_chr1.txt.gz
SuRE43_2-counts_chr2.txt.gz
SuRE43_2-counts_chr3.txt.gz
SuRE43_2-counts_chr4.txt.gz
SuRE43_2-counts_chr5.txt.gz
SuRE43_2-counts_chr6.txt.gz
SuRE43_2-counts_chr7.txt.gz
SuRE43_2-counts_chr8.txt.gz
SuRE43_2-counts_chr9.txt.gz
SuRE43_2-counts_chr10.txt.gz
SuRE43_2-counts_chr11.txt.gz
SuRE43_2-counts_chr12.txt.gz
SuRE43_2-counts_chr13.txt.gz
SuRE43_2-counts_chr14.txt.gz
SuRE43_2-counts_chr15.txt.gz
SuRE43_2-counts_chr16.txt.gz
SuRE43_2-counts_chr17.txt.gz
SuRE43_2-counts_chr18.txt.gz
SuRE43_2-counts_chr19.txt.gz
SuRE43_2-counts_chr20.txt.gz
SuRE43_2-counts_chr21.txt.gz
SuRE43_2-counts_chr22.txt.gz
SuRE43_2-counts_chrX.txt.gz


title: SuRE44, library2, transfection in K562, rep1

description:
SuRE_44_L2_K562_R1
PolyA RNA
Processed data files:
SuRE44_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE44_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE44_K562_lib1-lib2_norm_LP181101.bw
SuRE44_2-counts_chr1.txt.gz
SuRE44_2-counts_chr2.txt.gz
SuRE44_2-counts_chr3.txt.gz
SuRE44_2-counts_chr4.txt.gz
SuRE44_2-counts_chr5.txt.gz
SuRE44_2-counts_chr6.txt.gz
SuRE44_2-counts_chr7.txt.gz
SuRE44_2-counts_chr8.txt.gz
SuRE44_2-counts_chr9.txt.gz
SuRE44_2-counts_chr10.txt.gz
SuRE44_2-counts_chr11.txt.gz
SuRE44_2-counts_chr12.txt.gz
SuRE44_2-counts_chr13.txt.gz
SuRE44_2-counts_chr14.txt.gz
SuRE44_2-counts_chr15.txt.gz
SuRE44_2-counts_chr16.txt.gz
SuRE44_2-counts_chr17.txt.gz
SuRE44_2-counts_chr18.txt.gz
SuRE44_2-counts_chr19.txt.gz
SuRE44_2-counts_chr20.txt.gz
SuRE44_2-counts_chr21.txt.gz
SuRE44_2-counts_chr22.txt.gz
SuRE44_2-counts_chrX.txt.gz


title: CHC3625T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: SuRE43, library2, transfection in K562, rep1

description:
SuRE_43_L2_K562_R1
PolyA RNA
Processed data files:
SuRE43_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE43_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE43_K562_lib1-lib2_norm_LP181101.bw
SuRE43_2-counts_chr1.txt.gz
SuRE43_2-counts_chr2.txt.gz
SuRE43_2-counts_chr3.txt.gz
SuRE43_2-counts_chr4.txt.gz
SuRE43_2-counts_chr5.txt.gz
SuRE43_2-counts_chr6.txt.gz
SuRE43_2-counts_chr7.txt.gz
SuRE43_2-counts_chr8.txt.gz
SuRE43_2-counts_chr9.txt.gz
SuRE43_2-counts_chr10.txt.gz
SuRE43_2-counts_chr11.txt.gz
SuRE43_2-counts_chr12.txt.gz
SuRE43_2-counts_chr13.txt.gz
SuRE43_2-counts_chr14.txt.gz
SuRE43_2-counts_chr15.txt.gz
SuRE43_2-counts_chr16.txt.gz
SuRE43_2-counts_chr17.txt.gz
SuRE43_2-counts_chr18.txt.gz
SuRE43_2-counts_chr19.txt.gz
SuRE43_2-counts_chr20.txt.gz
SuRE43_2-counts_chr21.txt.gz
SuRE43_2-counts_chr22.txt.gz
SuRE43_2-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3623T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3624T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: SuRE44, library1, transfection in K562, rep3

description:
SuRE_44_L1_K562_R3
PolyA RNA
Processed data files:
SuRE44_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE44_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE44_K562_lib1-lib2_norm_LP181101.bw
SuRE44_1-counts_chr1.txt.gz
SuRE44_1-counts_chr2.txt.gz
SuRE44_1-counts_chr3.txt.gz
SuRE44_1-counts_chr4.txt.gz
SuRE44_1-counts_chr5.txt.gz
SuRE44_1-counts_chr6.txt.gz
SuRE44_1-counts_chr7.txt.gz
SuRE44_1-counts_chr8.txt.gz
SuRE44_1-counts_chr9.txt.gz
SuRE44_1-counts_chr10.txt.gz
SuRE44_1-counts_chr11.txt.gz
SuRE44_1-counts_chr12.txt.gz
SuRE44_1-counts_chr13.txt.gz
SuRE44_1-counts_chr14.txt.gz
SuRE44_1-counts_chr15.txt.gz
SuRE44_1-counts_chr16.txt.gz
SuRE44_1-counts_chr17.txt.gz
SuRE44_1-counts_chr18.txt.gz
SuRE44_1-counts_chr19.txt.gz
SuRE44_1-counts_chr20.txt.gz
SuRE44_1-counts_chr21.txt.gz
SuRE44_1-counts_chr22.txt.gz
SuRE44_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3622T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3633T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: SuRE43, library1, transfection in HEPG2, rep1

description:
SuRE_43_L1_HEPG2_R1
PolyA RNA
Processed data files:
SuRE43_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE43_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE43_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE43_1-counts_chr1.txt.gz
SuRE43_1-counts_chr2.txt.gz
SuRE43_1-counts_chr3.txt.gz
SuRE43_1-counts_chr4.txt.gz
SuRE43_1-counts_chr5.txt.gz
SuRE43_1-counts_chr6.txt.gz
SuRE43_1-counts_chr7.txt.gz
SuRE43_1-counts_chr8.txt.gz
SuRE43_1-counts_chr9.txt.gz
SuRE43_1-counts_chr10.txt.gz
SuRE43_1-counts_chr11.txt.gz
SuRE43_1-counts_chr12.txt.gz
SuRE43_1-counts_chr13.txt.gz
SuRE43_1-counts_chr14.txt.gz
SuRE43_1-counts_chr15.txt.gz
SuRE43_1-counts_chr16.txt.gz
SuRE43_1-counts_chr17.txt.gz
SuRE43_1-counts_chr18.txt.gz
SuRE43_1-counts_chr19.txt.gz
SuRE43_1-counts_chr20.txt.gz
SuRE43_1-counts_chr21.txt.gz
SuRE43_1-counts_chr22.txt.gz
SuRE43_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3620T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3631T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3621T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: SuRE43, library1, transfection in K562, rep2

description:
SuRE_43_L1_K562_R2
PolyA RNA
Processed data files:
SuRE43_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE43_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE43_K562_lib1-lib2_norm_LP181101.bw
SuRE43_1-counts_chr1.txt.gz
SuRE43_1-counts_chr2.txt.gz
SuRE43_1-counts_chr3.txt.gz
SuRE43_1-counts_chr4.txt.gz
SuRE43_1-counts_chr5.txt.gz
SuRE43_1-counts_chr6.txt.gz
SuRE43_1-counts_chr7.txt.gz
SuRE43_1-counts_chr8.txt.gz
SuRE43_1-counts_chr9.txt.gz
SuRE43_1-counts_chr10.txt.gz
SuRE43_1-counts_chr11.txt.gz
SuRE43_1-counts_chr12.txt.gz
SuRE43_1-counts_chr13.txt.gz
SuRE43_1-counts_chr14.txt.gz
SuRE43_1-counts_chr15.txt.gz
SuRE43_1-counts_chr16.txt.gz
SuRE43_1-counts_chr17.txt.gz
SuRE43_1-counts_chr18.txt.gz
SuRE43_1-counts_chr19.txt.gz
SuRE43_1-counts_chr20.txt.gz
SuRE43_1-counts_chr21.txt.gz
SuRE43_1-counts_chr22.txt.gz
SuRE43_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: SuRE43, library1, transfection in K562, rep3

description:
SuRE_43_L1_K562_R3
PolyA RNA
Processed data files:
SuRE43_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE43_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE43_K562_lib1-lib2_norm_LP181101.bw
SuRE43_1-counts_chr1.txt.gz
SuRE43_1-counts_chr2.txt.gz
SuRE43_1-counts_chr3.txt.gz
SuRE43_1-counts_chr4.txt.gz
SuRE43_1-counts_chr5.txt.gz
SuRE43_1-counts_chr6.txt.gz
SuRE43_1-counts_chr7.txt.gz
SuRE43_1-counts_chr8.txt.gz
SuRE43_1-counts_chr9.txt.gz
SuRE43_1-counts_chr10.txt.gz
SuRE43_1-counts_chr11.txt.gz
SuRE43_1-counts_chr12.txt.gz
SuRE43_1-counts_chr13.txt.gz
SuRE43_1-counts_chr14.txt.gz
SuRE43_1-counts_chr15.txt.gz
SuRE43_1-counts_chr16.txt.gz
SuRE43_1-counts_chr17.txt.gz
SuRE43_1-counts_chr18.txt.gz
SuRE43_1-counts_chr19.txt.gz
SuRE43_1-counts_chr20.txt.gz
SuRE43_1-counts_chr21.txt.gz
SuRE43_1-counts_chr22.txt.gz
SuRE43_1-counts_chrX.txt.gz


title: SuRE43, library1, transfection in K562, rep1

description:
SuRE_43_L1_K562_R1
PolyA RNA
Processed data files:
SuRE43_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE43_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE43_K562_lib1-lib2_norm_LP181101.bw
SuRE43_1-counts_chr1.txt.gz
SuRE43_1-counts_chr2.txt.gz
SuRE43_1-counts_chr3.txt.gz
SuRE43_1-counts_chr4.txt.gz
SuRE43_1-counts_chr5.txt.gz
SuRE43_1-counts_chr6.txt.gz
SuRE43_1-counts_chr7.txt.gz
SuRE43_1-counts_chr8.txt.gz
SuRE43_1-counts_chr9.txt.gz
SuRE43_1-counts_chr10.txt.gz
SuRE43_1-counts_chr11.txt.gz
SuRE43_1-counts_chr12.txt.gz
SuRE43_1-counts_chr13.txt.gz
SuRE43_1-counts_chr14.txt.gz
SuRE43_1-counts_chr15.txt.gz
SuRE43_1-counts_chr16.txt.gz
SuRE43_1-counts_chr17.txt.gz
SuRE43_1-counts_chr18.txt.gz
SuRE43_1-counts_chr19.txt.gz
SuRE43_1-counts_chr20.txt.gz
SuRE43_1-counts_chr21.txt.gz
SuRE43_1-counts_chr22.txt.gz
SuRE43_1-counts_chrX.txt.gz


title: CHC3619T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3618T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

value: Splice_Site g.chr17:7578290C>T

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: rps6ka3 mutation

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: SuRE42, library2, transfection in K562, rep3

description:
SuRE_42_L2_K562_R3
PolyA RNA
Processed data files:
SuRE42_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE42_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE42_K562_lib1-lib2_norm_LP181101.bw
SuRE42_2-counts_chr1.txt.gz
SuRE42_2-counts_chr2.txt.gz
SuRE42_2-counts_chr3.txt.gz
SuRE42_2-counts_chr4.txt.gz
SuRE42_2-counts_chr5.txt.gz
SuRE42_2-counts_chr6.txt.gz
SuRE42_2-counts_chr7.txt.gz
SuRE42_2-counts_chr8.txt.gz
SuRE42_2-counts_chr9.txt.gz
SuRE42_2-counts_chr10.txt.gz
SuRE42_2-counts_chr11.txt.gz
SuRE42_2-counts_chr12.txt.gz
SuRE42_2-counts_chr13.txt.gz
SuRE42_2-counts_chr14.txt.gz
SuRE42_2-counts_chr15.txt.gz
SuRE42_2-counts_chr16.txt.gz
SuRE42_2-counts_chr17.txt.gz
SuRE42_2-counts_chr18.txt.gz
SuRE42_2-counts_chr19.txt.gz
SuRE42_2-counts_chr20.txt.gz
SuRE42_2-counts_chr21.txt.gz
SuRE42_2-counts_chr22.txt.gz
SuRE42_2-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: SuRE42, library2, transfection in HEPG2, rep2

description:
SuRE_42_L2_HEPG2_R2
PolyA RNA
Processed data files:
SuRE42_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE42_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE42_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE42_2-counts_chr1.txt.gz
SuRE42_2-counts_chr2.txt.gz
SuRE42_2-counts_chr3.txt.gz
SuRE42_2-counts_chr4.txt.gz
SuRE42_2-counts_chr5.txt.gz
SuRE42_2-counts_chr6.txt.gz
SuRE42_2-counts_chr7.txt.gz
SuRE42_2-counts_chr8.txt.gz
SuRE42_2-counts_chr9.txt.gz
SuRE42_2-counts_chr10.txt.gz
SuRE42_2-counts_chr11.txt.gz
SuRE42_2-counts_chr12.txt.gz
SuRE42_2-counts_chr13.txt.gz
SuRE42_2-counts_chr14.txt.gz
SuRE42_2-counts_chr15.txt.gz
SuRE42_2-counts_chr16.txt.gz
SuRE42_2-counts_chr17.txt.gz
SuRE42_2-counts_chr18.txt.gz
SuRE42_2-counts_chr19.txt.gz
SuRE42_2-counts_chr20.txt.gz
SuRE42_2-counts_chr21.txt.gz
SuRE42_2-counts_chr22.txt.gz
SuRE42_2-counts_chrX.txt.gz


title: SuRE42, library2, transfection in HEPG2, rep1

description:
SuRE_42_L2_HEPG2_R1
PolyA RNA
Processed data files:
SuRE42_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE42_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE42_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE42_2-counts_chr1.txt.gz
SuRE42_2-counts_chr2.txt.gz
SuRE42_2-counts_chr3.txt.gz
SuRE42_2-counts_chr4.txt.gz
SuRE42_2-counts_chr5.txt.gz
SuRE42_2-counts_chr6.txt.gz
SuRE42_2-counts_chr7.txt.gz
SuRE42_2-counts_chr8.txt.gz
SuRE42_2-counts_chr9.txt.gz
SuRE42_2-counts_chr10.txt.gz
SuRE42_2-counts_chr11.txt.gz
SuRE42_2-counts_chr12.txt.gz
SuRE42_2-counts_chr13.txt.gz
SuRE42_2-counts_chr14.txt.gz
SuRE42_2-counts_chr15.txt.gz
SuRE42_2-counts_chr16.txt.gz
SuRE42_2-counts_chr17.txt.gz
SuRE42_2-counts_chr18.txt.gz
SuRE42_2-counts_chr19.txt.gz
SuRE42_2-counts_chr20.txt.gz
SuRE42_2-counts_chr21.txt.gz
SuRE42_2-counts_chr22.txt.gz
SuRE42_2-counts_chrX.txt.gz


title: CHC339T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

value: RESECTION

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status

tag: atm mutation

tag: cdkn1a status

tag: cdkn1a mutation

tag: map1b status

tag: map1b mutation

tag: mll2 status


title: CHC3368T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

value: HD

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: SuRE43, library1, transfection in HEPG2, rep2

description:
SuRE_43_L1_HEPG2_R2
PolyA RNA
Processed data files:
SuRE43_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE43_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE43_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE43_1-counts_chr1.txt.gz
SuRE43_1-counts_chr2.txt.gz
SuRE43_1-counts_chr3.txt.gz
SuRE43_1-counts_chr4.txt.gz
SuRE43_1-counts_chr5.txt.gz
SuRE43_1-counts_chr6.txt.gz
SuRE43_1-counts_chr7.txt.gz
SuRE43_1-counts_chr8.txt.gz
SuRE43_1-counts_chr9.txt.gz
SuRE43_1-counts_chr10.txt.gz
SuRE43_1-counts_chr11.txt.gz
SuRE43_1-counts_chr12.txt.gz
SuRE43_1-counts_chr13.txt.gz
SuRE43_1-counts_chr14.txt.gz
SuRE43_1-counts_chr15.txt.gz
SuRE43_1-counts_chr16.txt.gz
SuRE43_1-counts_chr17.txt.gz
SuRE43_1-counts_chr18.txt.gz
SuRE43_1-counts_chr19.txt.gz
SuRE43_1-counts_chr20.txt.gz
SuRE43_1-counts_chr21.txt.gz
SuRE43_1-counts_chr22.txt.gz
SuRE43_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: SuRE42, library2, transfection in K562, rep2

description:
SuRE_42_L2_K562_R2
PolyA RNA
Processed data files:
SuRE42_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE42_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE42_K562_lib1-lib2_norm_LP181101.bw
SuRE42_2-counts_chr1.txt.gz
SuRE42_2-counts_chr2.txt.gz
SuRE42_2-counts_chr3.txt.gz
SuRE42_2-counts_chr4.txt.gz
SuRE42_2-counts_chr5.txt.gz
SuRE42_2-counts_chr6.txt.gz
SuRE42_2-counts_chr7.txt.gz
SuRE42_2-counts_chr8.txt.gz
SuRE42_2-counts_chr9.txt.gz
SuRE42_2-counts_chr10.txt.gz
SuRE42_2-counts_chr11.txt.gz
SuRE42_2-counts_chr12.txt.gz
SuRE42_2-counts_chr13.txt.gz
SuRE42_2-counts_chr14.txt.gz
SuRE42_2-counts_chr15.txt.gz
SuRE42_2-counts_chr16.txt.gz
SuRE42_2-counts_chr17.txt.gz
SuRE42_2-counts_chr18.txt.gz
SuRE42_2-counts_chr19.txt.gz
SuRE42_2-counts_chr20.txt.gz
SuRE42_2-counts_chr21.txt.gz
SuRE42_2-counts_chr22.txt.gz
SuRE42_2-counts_chrX.txt.gz


title: SuRE42, library1, transfection in HEPG2, rep2

description:
SuRE_42_L1_HEPG2_R2
PolyA RNA
Processed data files:
SuRE42_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE42_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE42_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE42_1-counts_chr1.txt.gz
SuRE42_1-counts_chr2.txt.gz
SuRE42_1-counts_chr3.txt.gz
SuRE42_1-counts_chr4.txt.gz
SuRE42_1-counts_chr5.txt.gz
SuRE42_1-counts_chr6.txt.gz
SuRE42_1-counts_chr7.txt.gz
SuRE42_1-counts_chr8.txt.gz
SuRE42_1-counts_chr9.txt.gz
SuRE42_1-counts_chr10.txt.gz
SuRE42_1-counts_chr11.txt.gz
SuRE42_1-counts_chr12.txt.gz
SuRE42_1-counts_chr13.txt.gz
SuRE42_1-counts_chr14.txt.gz
SuRE42_1-counts_chr15.txt.gz
SuRE42_1-counts_chr16.txt.gz
SuRE42_1-counts_chr17.txt.gz
SuRE42_1-counts_chr18.txt.gz
SuRE42_1-counts_chr19.txt.gz
SuRE42_1-counts_chr20.txt.gz
SuRE42_1-counts_chr21.txt.gz
SuRE42_1-counts_chr22.txt.gz
SuRE42_1-counts_chrX.txt.gz


title: CHC3365T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

value: RADIOFREQ

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

value: A

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

value: p.NSMG791fs + p.S949fs

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3366T

description:
MUTHEC
test

tag: gender

value: M

tag: age

tag: diagnosis

value: HCC

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3367T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

value: no

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3364T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

value: yes

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status

tag: atm mutation


title: SuRE42, library1, transfection in K562, rep2

description:
SuRE_42_L1_K562_R2
PolyA RNA
Processed data files:
SuRE42_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE42_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE42_K562_lib1-lib2_norm_LP181101.bw
SuRE42_1-counts_chr1.txt.gz
SuRE42_1-counts_chr2.txt.gz
SuRE42_1-counts_chr3.txt.gz
SuRE42_1-counts_chr4.txt.gz
SuRE42_1-counts_chr5.txt.gz
SuRE42_1-counts_chr6.txt.gz
SuRE42_1-counts_chr7.txt.gz
SuRE42_1-counts_chr8.txt.gz
SuRE42_1-counts_chr9.txt.gz
SuRE42_1-counts_chr10.txt.gz
SuRE42_1-counts_chr11.txt.gz
SuRE42_1-counts_chr12.txt.gz
SuRE42_1-counts_chr13.txt.gz
SuRE42_1-counts_chr14.txt.gz
SuRE42_1-counts_chr15.txt.gz
SuRE42_1-counts_chr16.txt.gz
SuRE42_1-counts_chr17.txt.gz
SuRE42_1-counts_chr18.txt.gz
SuRE42_1-counts_chr19.txt.gz
SuRE42_1-counts_chr20.txt.gz
SuRE42_1-counts_chr21.txt.gz
SuRE42_1-counts_chr22.txt.gz
SuRE42_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3363T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: alb status

tag: alb mutation

tag: apob status


title: SuRE42, library1, transfection in K562, rep1

description:
SuRE_42_L1_K562_R1
PolyA RNA
Processed data files:
SuRE42_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE42_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE42_K562_lib1-lib2_norm_LP181101.bw
SuRE42_1-counts_chr1.txt.gz
SuRE42_1-counts_chr2.txt.gz
SuRE42_1-counts_chr3.txt.gz
SuRE42_1-counts_chr4.txt.gz
SuRE42_1-counts_chr5.txt.gz
SuRE42_1-counts_chr6.txt.gz
SuRE42_1-counts_chr7.txt.gz
SuRE42_1-counts_chr8.txt.gz
SuRE42_1-counts_chr9.txt.gz
SuRE42_1-counts_chr10.txt.gz
SuRE42_1-counts_chr11.txt.gz
SuRE42_1-counts_chr12.txt.gz
SuRE42_1-counts_chr13.txt.gz
SuRE42_1-counts_chr14.txt.gz
SuRE42_1-counts_chr15.txt.gz
SuRE42_1-counts_chr16.txt.gz
SuRE42_1-counts_chr17.txt.gz
SuRE42_1-counts_chr18.txt.gz
SuRE42_1-counts_chr19.txt.gz
SuRE42_1-counts_chr20.txt.gz
SuRE42_1-counts_chr21.txt.gz
SuRE42_1-counts_chr22.txt.gz
SuRE42_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC335T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: stat3 mutation

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status

tag: atm mutation

tag: cdkn1a status

tag: cdkn1a mutation

tag: map1b status

tag: map1b mutation

tag: mll2 status

tag: mll2 mutation

tag: setd2 status


title: CHC3359T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3362T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3360T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

value: C

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: Δ CTRL Input (4)

city: Burlington

first: Seth

last: Frietze

state: VT

address: 149 Beaumont Avenue

department: Biomedical and Health Sciences

country: USA

institute: University of Vermont

library_source: genomic

data_processing:
Basecalls performed using CASAVA version 2.17
ChIP-seq reads were aligned to the HSV1 genome assembly using Bowtie2 version 2.3.4.3.
ChIP-seq peak calling: MACS2, version 2.1.1.20160309
Bed graphs produced by MACS2 were converted to bigwigs with "bdg2bw" found at: https://gist.github.com/taoliu/2469050
Genome_build: HSV1 genome (NC_001806.2)
Supplementary_files_format_and_content: bigwig files for fold-enrichment signal across HSV1

molecule: genomic DNA

source_name: LUHMES

growth_protocol: 4-6 weeks of age BALB/c mice were anesthetized using intramuscular injections of ketamine and xylazine infected with 2 different strains of HSV1 (WT and DeltaCTRL2) in the corneal epithelium.  Viral suspensions of 200,000 PFU/eye in a 5 ul volume were added to each eye for 17syn+ and DeltaCTRL2.  At latent infection - 28 days post-infection, Chromatin Immunoprecipitation Sequencing (ChIP-seq) was performed using trigeminal ganglia (TG) from three mice.

extract_protocol:
TGs were homogenized, crosslinked in 1% formaldehyde, and the cell lysates were sonicated.  The sheared chromatin was pre-cleared with salmon-sperm DNA-protein A-agarose beads prior to antibody incubation. An aliquot representing 1/5 of the total sample volume was removed as a sample input (I).  Both bound and input fractions were treated with 5M NaCl, RNAse A and proteinase K and the DNA was finally purified using a Qiaquick PCR purification kit.
Prior to Illumina library construction and hybridization capture-based target enrichment. Briefly, 8 PCR-cycle indexed libraries were pooled for selection using the SureSelect XT hs system with custom probes spanning the HSV-1 genome (Roche). Samples were subject to 4 additional PCR cycles and used for 100  base pair paired-end Illumina sequencing on the HiSeq platform.
Kappa biosystems hyperprep

tag: infection

value: HSV-1 DCTRL2

tag: chip antibody


title: Δ CTRL Input (6)


title: Δ CTRL Input (5)


title: Δ CTRL Bound (6)


title: SuRE42, library2, transfection in K562, rep1

description:
SuRE_42_L2_K562_R1
PolyA RNA
Processed data files:
SuRE42_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE42_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE42_K562_lib1-lib2_norm_LP181101.bw
SuRE42_2-counts_chr1.txt.gz
SuRE42_2-counts_chr2.txt.gz
SuRE42_2-counts_chr3.txt.gz
SuRE42_2-counts_chr4.txt.gz
SuRE42_2-counts_chr5.txt.gz
SuRE42_2-counts_chr6.txt.gz
SuRE42_2-counts_chr7.txt.gz
SuRE42_2-counts_chr8.txt.gz
SuRE42_2-counts_chr9.txt.gz
SuRE42_2-counts_chr10.txt.gz
SuRE42_2-counts_chr11.txt.gz
SuRE42_2-counts_chr12.txt.gz
SuRE42_2-counts_chr13.txt.gz
SuRE42_2-counts_chr14.txt.gz
SuRE42_2-counts_chr15.txt.gz
SuRE42_2-counts_chr16.txt.gz
SuRE42_2-counts_chr17.txt.gz
SuRE42_2-counts_chr18.txt.gz
SuRE42_2-counts_chr19.txt.gz
SuRE42_2-counts_chr20.txt.gz
SuRE42_2-counts_chr21.txt.gz
SuRE42_2-counts_chr22.txt.gz
SuRE42_2-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: CHC3358T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

value: NM

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3357T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3356T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: Δ CTRL Bound (5)

tag: infection

tag: chip antibody


title: 17+ Input (5)

value: HSV-1 17syn+


title: Δ CTRL Bound (4)


title: CHC3355T

description:
MUTHEC
test

tag: gender

value: F

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: CHC433T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3354T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: 17+ Input (6)

tag: infection

tag: chip antibody


title: 17+ Input (4)


title: 17+ Bound (6)


title: SuRE42, library1, transfection in HEPG2, rep1

description:
SuRE_42_L1_HEPG2_R1
PolyA RNA
Processed data files:
SuRE42_HEPG2_lib1-lib2_norm.minus_LP181101.bw
SuRE42_HEPG2_lib1-lib2_norm.plus_LP181101.bw
SuRE42_HEPG2_lib1-lib2_norm_LP181101.bw
SuRE42_1-counts_chr1.txt.gz
SuRE42_1-counts_chr2.txt.gz
SuRE42_1-counts_chr3.txt.gz
SuRE42_1-counts_chr4.txt.gz
SuRE42_1-counts_chr5.txt.gz
SuRE42_1-counts_chr6.txt.gz
SuRE42_1-counts_chr7.txt.gz
SuRE42_1-counts_chr8.txt.gz
SuRE42_1-counts_chr9.txt.gz
SuRE42_1-counts_chr10.txt.gz
SuRE42_1-counts_chr11.txt.gz
SuRE42_1-counts_chr12.txt.gz
SuRE42_1-counts_chr13.txt.gz
SuRE42_1-counts_chr14.txt.gz
SuRE42_1-counts_chr15.txt.gz
SuRE42_1-counts_chr16.txt.gz
SuRE42_1-counts_chr17.txt.gz
SuRE42_1-counts_chr18.txt.gz
SuRE42_1-counts_chr19.txt.gz
SuRE42_1-counts_chr20.txt.gz
SuRE42_1-counts_chr21.txt.gz
SuRE42_1-counts_chr22.txt.gz
SuRE42_1-counts_chrX.txt.gz

tag: library source cell line

tag: transfected into cell line


title: SuRE42, library1, transfection in K562, rep3

description:
SuRE_42_L1_K562_R3
PolyA RNA
Processed data files:
SuRE42_K562_lib1-lib2_norm.minus_LP181101.bw
SuRE42_K562_lib1-lib2_norm.plus_LP181101.bw
SuRE42_K562_lib1-lib2_norm_LP181101.bw
SuRE42_1-counts_chr1.txt.gz
SuRE42_1-counts_chr2.txt.gz
SuRE42_1-counts_chr3.txt.gz
SuRE42_1-counts_chr4.txt.gz
SuRE42_1-counts_chr5.txt.gz
SuRE42_1-counts_chr6.txt.gz
SuRE42_1-counts_chr7.txt.gz
SuRE42_1-counts_chr8.txt.gz
SuRE42_1-counts_chr9.txt.gz
SuRE42_1-counts_chr10.txt.gz
SuRE42_1-counts_chr11.txt.gz
SuRE42_1-counts_chr12.txt.gz
SuRE42_1-counts_chr13.txt.gz
SuRE42_1-counts_chr14.txt.gz
SuRE42_1-counts_chr15.txt.gz
SuRE42_1-counts_chr16.txt.gz
SuRE42_1-counts_chr17.txt.gz
SuRE42_1-counts_chr18.txt.gz
SuRE42_1-counts_chr19.txt.gz
SuRE42_1-counts_chr20.txt.gz
SuRE42_1-counts_chr21.txt.gz
SuRE42_1-counts_chr22.txt.gz
SuRE42_1-counts_chrX.txt.gz


title: 17+ Bound (5)


title: Δ CTRL Input (3)


title: CHC3353T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3351T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

value: Splice_Site g.chr9:21974675A>T

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3349T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

value: B

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3350T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: 17+ Bound (4)

tag: infection

tag: chip antibody


title: Δ CTRL Bound (2)


title: Δ CTRL Input (2)


title: CHC3348T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: Δ CTRL Bound (1)

tag: infection

tag: chip antibody


title: Δ CTRL Input (1)


title: 17+ Input (3)


title: CHC3347T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: 17+ Input (2)

tag: infection

tag: chip antibody


title: Δ CTRL Bound (3)


title: CHC3352T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3342T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: 17+ Input (1)

tag: infection

tag: chip antibody


title: CHC3341T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: 17+ Bound (3)

tag: infection

tag: chip antibody


title: CHC3344T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3343T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3345T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: 17+ Bound (2)

tag: infection

tag: chip antibody


title: CHC3339T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: nfe2l2 mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status

tag: atm mutation


title: 17+ Bound (1)

tag: infection

tag: chip antibody


title: CHC3346T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status


title: CHC3338T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: arid2 mutation

tag: il6st status

tag: il6st mutation

tag: keap1 status

tag: keap1 mutation

tag: pik3ca status

tag: pik3ca mutation

tag: irf2 status

tag: kras status

tag: kras mutation

tag: nras status

tag: hras

tag: hnf1a status

tag: hnf1a mutation

tag: apob mutation

tag: atm status


title: CHC3336T

description:
MUTHEC
test

tag: gender

tag: age

tag: diagnosis

tag: type

tag: alcohol

tag: hemochromatosis

tag: metavir fibrosis

tag: bclc

tag: serumalphafoeto (ui)

tag: tert status

tag: tert mutation

tag: ctnnb1 status

tag: ctnnb1 mutation

tag: tp53 status

tag: tp53 mutation

tag: arid1a status

tag: arid1a mutation

tag: axin1 status

tag: axin1 mutation

tag: cdkn2a status

tag: cdkn2a mutation

tag: arid2 status

tag: rps6ka3 status

tag: rps6ka3 mutation

tag: nfe2l2 status

tag: nfe2l2 mutation

tag: irf2 mutation

tag: jak1 status

tag: jak1 mutation

tag: gnas status

tag: gnas mutation

tag: braf status

tag: braf mutation

tag: stat3 status

tag: stat3 mutation

tag: alb status

tag: alb mutation

tag: apob status