title: K562:AACGATCAGTT

description: control

value: AACGATCAGTT


title: K562:AACGAACGTAT

status: Public on Mar 20 2018

type: SRA

city: Monterotondo

first: Christophe

last: Lancrin

state: RM

address: Via Ramarini 32

department: EMBL Rome

country: Italy

institute: EMBL

description: control

library_source: transcriptomic

data_processing:
demultiplexing of reads using well barcode in read1 (read1 contains well barcode 11bp directly followed by 10bp molecule barcode (UMI) followed by 9bp of fragment; read2 contains transcript sequence part of fragment). Demultiplexed files (one per barcode) contain read2 and the UMI extracted from read1 has been added to the read name.
trimming of read2 with cutadapt -a AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT -a GGGGGGGGGGGGGGGGGGGGG -a AAAAAAAAAAAAAAAAAAAAA -a GCGTCGTGTAGGGAA -g TTCCCTACACGACGC  -n 2 -m 15 --trim-n  -q 25 -f fastq
mapping with STAR  --runMode alignReads --outFilterMismatchNoverLmax 0.1 --outSAMtype BAM SortedByCoordinate
read counting with featureCounts -R -d 15 -s 1 -g gene_id -t exon -a Mus_musculus.GRCm38.79.gtf
UMI counting (UMI barcode correction and filtering)
Genome_build: Mus_musculus.GRCm38
Supplementary_files_format_and_content: The file countMatrix.txt contains a matrix of UMI counts (rows: gene identifiers as in Mus_musculus.GRCm38.79.gtf and columns: well barcodes as sample names).

molecule: polyA RNA

organism: Homo sapiens

extract_protocol:
Wafergen iCELL8 standard protocol
Nextera XT DNA (Illumina), sc-RNA Seq (single cell RNA Seq)

tag: wellbarcode

value: AACGAACGTAT

tag: sampletype

tag: chiprowid

tag: chipcolumnid


title: K562:AACCTTCTTAC

description: control

value: AACCTTCTTAC


title: K562:AACGCGGTCAT

description: control

value: AACGCGGTCAT


title: Pos_Ctrl:GTAGTCGTCCA

description: control

organism: Mus musculus

source_name: totalRNA derived from bulk i8TFs BL-CFC day3 of culture (differentiated murine embryonic stem cells) without dox

value: GTAGTCGTCCA


title: RNA-Seq analysis in CUTLL1 cells treated with shHSF1 (rep2)

city: New York

first: Nikos

last: Kourtis

address: 550 First Avenue

country: USA

institute: NYU School of Medicine

data_processing:
Basecalling by using CASAVA
Alignment was performed using STAR aligner
DESeq2 for differential expression analysis
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited-text - DESeq2 normalized FPKM values

molecule: total RNA

growth_protocol: cells in suspension, growing in RPMI

extract_protocol:
RNeasy kit (Qiagen)
Poly-A+ (magnetic oligodT-containing beads (Invitrogen)) or Ribominus RNA was used for library preparation. cDNA preparation and strand-specific library construction was performed using the dUTP method. Libraries were sequenced on the Illumina HiSeq 2000 using 50bp single-read method.

treatment_protocol: cells were treated with gSI for 24H. HSF1 was downregulated for 48H.

tag: cell type

value: human T cell leukemia cells

tag: cell line


title: Pos_Ctrl:GGTTCCGCCTG

description: control

value: GGTTCCGCCTG


title: i8TFs_plus:TCGTCTGGTAG

description: A2lox.i8TFs with doxycycline

source_name: BL-CFC day3 of culture (differentiated murine embryonic stem cells)

value: TCGTCTGGTAG


title: Pos_Ctrl:GTCGTCTTAGG

description: control

value: GTCGTCTTAGG


title: Pos_Ctrl:GTTATCAAGTC

description: control

value: GTTATCAAGTC


title: i8TFs_plus:TTGGCTTACCA

description: A2lox.i8TFs with doxycycline

value: TTGGCTTACCA


title: i8TFs_plus:TTGGCGCAATT

description: A2lox.i8TFs with doxycycline

value: TTGGCGCAATT


title: i8TFs_plus:TCTATACGATG

description: A2lox.i8TFs with doxycycline

value: TCTATACGATG


title: i8TFs_plus:TCGTTCTTGGT

description: A2lox.i8TFs with doxycycline

value: TCGTTCTTGGT


title: i8TFs_plus:TTGGAGAGTAG

description: A2lox.i8TFs with doxycycline

value: TTGGAGAGTAG


title: IMR32

city: Rourkela

first: Dr. Bibekanand

last: Mallick

state: Odisha

address: NIT Rourkela

department: Department of Life Science

country: India

institute: National Institute of Technology

description: small RNA

data_processing:
bcl2fastq software (Illumina) was used for converting image file to FASTq format.
Sequenced reads were trimmed for adaptor sequence using srna Work bench and Quality check of the generated data was done using the FASTqc software.
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files of annotated piRNAs predicted for each Sample.

source_name: neuroblastoma cell line

extract_protocol:
The cell lines are procured from NCCS, India and maintained in MEM (IMR 32) and Hams F12K (SH-SY-5Y) growth media supplemented with 10% FBS and 1% antibiotics Pen-Strep at proper growing conditions. Total RNA was extracted from the above cell lines with the use of RNeasy Mini kit (Qiagen, USA) according to the manufacturer’s instructions. The purity of isolated RNA was evaluated using NanoDrop spectrophotometer (Thermo Scientific) by measuring absorbance at 260 nm and 280 nm. An aliquot of each the samples isolated from IMR-32 and SH-SY-5Y was also run on an Agilent RNA Bioanalyzer chip to check for RNA integrity number (RIN) and was found to be 8.3 and 9.2 respectively.
The RNA libraries were constructed for sequencing following Illumina TruSeq Small RNA library protocol outlined in “TruSeq Small RNA Sample Preparation Guide” (Part # 15004197; Rev. F; February 2014) and using TruSeq Small RNA sample preparation kit (Illumina, # RS-200-0012).

value: neuroblastoma cell line IMR32


title: i8TFs_plus:TCGTCTCGAGG

description: A2lox.i8TFs with doxycycline

value: TCGTCTCGAGG


title: i8TFs_plus:TCTACCGAGTC

description: A2lox.i8TFs with doxycycline

value: TCTACCGAGTC


title: i8TFs_plus:TTGGATATCCG

description: A2lox.i8TFs with doxycycline

value: TTGGATATCCG


title: i8TFs_plus:TCTACCATTCT

description: A2lox.i8TFs with doxycycline

value: TCTACCATTCT


title: i8TFs_plus:TCGTATTCGCC

description: A2lox.i8TFs with doxycycline

value: TCGTATTCGCC


title: i8TFs_plus:TCGGTTAACTT

description: A2lox.i8TFs with doxycycline

value: TCGGTTAACTT


title: i8TFs_plus:TTGGACGTAGA

description: A2lox.i8TFs with doxycycline

value: TTGGACGTAGA


title: i8TFs_plus:TCGGTCGTCGC

description: A2lox.i8TFs with doxycycline

value: TCGGTCGTCGC


title: i8TFs_plus:TTGCTGGCCGC

description: A2lox.i8TFs with doxycycline

value: TTGCTGGCCGC


title: i8TFs_plus:TTGCTACTAAT

description: A2lox.i8TFs with doxycycline

value: TTGCTACTAAT


title: SH-SY-5Y

description: small RNA

value: neuroblastoma cell line SH-SY-5Y


title: i8TFs_plus:TTGCTTACGGA

description: A2lox.i8TFs with doxycycline

value: TTGCTTACGGA


title: i8TFs_plus:TCGATCTCTGG

description: A2lox.i8TFs with doxycycline

value: TCGATCTCTGG


title: i8TFs_plus:TCGCTTGCCGT

description: A2lox.i8TFs with doxycycline

value: TCGCTTGCCGT


title: i8TFs_plus:TTGCTATGCGA

description: A2lox.i8TFs with doxycycline

value: TTGCTATGCGA


title: i8TFs_plus:TTGCTCTAGGT

description: A2lox.i8TFs with doxycycline

value: TTGCTCTAGGT


title: i8TFs_plus:TTGCTTAATCT

description: A2lox.i8TFs with doxycycline

value: TTGCTTAATCT


title: i8TFs_plus:GTTGCGGAGAT

description: A2lox.i8TFs with doxycycline

value: GTTGCGGAGAT


title: i8TFs_plus:TAGGATGGAAT

description: A2lox.i8TFs with doxycycline

value: TAGGATGGAAT


title: i8TFs_plus:TCGGCGGAGGT

description: A2lox.i8TFs with doxycycline

value: TCGGCGGAGGT


title: i8TFs_plus:TAGGTCAGACC

description: A2lox.i8TFs with doxycycline

value: TAGGTCAGACC


title: i8TFs_plus:TCGTTAAGTTC

description: A2lox.i8TFs with doxycycline

value: TCGTTAAGTTC


title: i8TFs_plus:GTTGAGTCAAC

description: A2lox.i8TFs with doxycycline

value: GTTGAGTCAAC


title: i8TFs_plus:GTTGACTCGTC

description: A2lox.i8TFs with doxycycline

value: GTTGACTCGTC


title: i8TFs_plus:GTTGATGGAGC

description: A2lox.i8TFs with doxycycline

value: GTTGATGGAGC


title: i8TFs_plus:TAAGTTGAACG

description: A2lox.i8TFs with doxycycline

value: TAAGTTGAACG


title: i8TFs_plus:GTTGAGACCGC

description: A2lox.i8TFs with doxycycline

value: GTTGAGACCGC


title: i8TFs_plus:TAACCGATTCG

description: A2lox.i8TFs with doxycycline

value: TAACCGATTCG


title: i8TFs_plus:GTTCTGCCTAC

description: A2lox.i8TFs with doxycycline

value: GTTCTGCCTAC


title: i8TFs_plus:GTTCTGGAATT

description: A2lox.i8TFs with doxycycline

value: GTTCTGGAATT


title: i8TFs_plus:TCGGCTGGCGG

description: A2lox.i8TFs with doxycycline

value: TCGGCTGGCGG


title: i8TFs_plus:TCGGAGGTACT

description: A2lox.i8TFs with doxycycline

value: TCGGAGGTACT


title: i8TFs_plus:GTTCTGCTCCA

description: A2lox.i8TFs with doxycycline

value: GTTCTGCTCCA


title: i8TFs_plus:GTTCTCGTAGT

description: A2lox.i8TFs with doxycycline

value: GTTCTCGTAGT


title: i8TFs_plus:GTTGGCTAGAA

description: A2lox.i8TFs with doxycycline

value: GTTGGCTAGAA


title: i8TFs_plus:GTTGGATAGCC

description: A2lox.i8TFs with doxycycline

value: GTTGGATAGCC


title: i8TFs_plus:GTTGGCTGATC

description: A2lox.i8TFs with doxycycline

value: GTTGGCTGATC


title: i8TFs_plus:GTTGCCGTCAG

description: A2lox.i8TFs with doxycycline

value: GTTGCCGTCAG


title: i8TFs_plus:GTTCTTACTCC

description: A2lox.i8TFs with doxycycline

value: GTTCTTACTCC


title: i8TFs_plus:TAACCAGTTAG

description: A2lox.i8TFs with doxycycline

value: TAACCAGTTAG


title: i8TFs_plus:TAGGTAGGATA

description: A2lox.i8TFs with doxycycline

value: TAGGTAGGATA


title: i8TFs_plus:GTTGACCAACG

description: A2lox.i8TFs with doxycycline

value: GTTGACCAACG


title: i8TFs_plus:GTTCGAACTAC

description: A2lox.i8TFs with doxycycline

value: GTTCGAACTAC


title: i8TFs_plus:TAGTTCGCGCC

description: A2lox.i8TFs with doxycycline

value: TAGTTCGCGCC


title: i8TFs_plus:TCATGATCATG

description: A2lox.i8TFs with doxycycline

value: TCATGATCATG


title: i8TFs_plus:GTTCGATCTTA

description: A2lox.i8TFs with doxycycline

value: GTTCGATCTTA


title: i8TFs_plus:TATATAGTCTT

description: A2lox.i8TFs with doxycycline

value: TATATAGTCTT


title: i8TFs_plus:TCATGCTACGG

description: A2lox.i8TFs with doxycycline

value: TCATGCTACGG


title: i8TFs_plus:TCAGTTCATAA

description: A2lox.i8TFs with doxycycline

value: TCAGTTCATAA


title: i8TFs_plus:GTTCGAGAGCG

description: A2lox.i8TFs with doxycycline

value: GTTCGAGAGCG


title: i8TFs_plus:GTTACTGCCAT

description: A2lox.i8TFs with doxycycline

value: GTTACTGCCAT


title: i8TFs_plus:GTTAATCATCC

description: A2lox.i8TFs with doxycycline

value: GTTAATCATCC


title: i8TFs_plus:GTTCCTAATGC

description: A2lox.i8TFs with doxycycline

value: GTTCCTAATGC


title: i8TFs_plus:GTTCCGTCTGG

description: A2lox.i8TFs with doxycycline

value: GTTCCGTCTGG


title: i8TFs_plus:GTTCGCTGGCT

description: A2lox.i8TFs with doxycycline

value: GTTCGCTGGCT


title: i8TFs_plus:GTTGACCGCAT

description: A2lox.i8TFs with doxycycline

value: GTTGACCGCAT


title: i8TFs_plus:GTTCCATATTC

description: A2lox.i8TFs with doxycycline

value: GTTCCATATTC


title: i8TFs_plus:GTTAATGCAAC

description: A2lox.i8TFs with doxycycline

value: GTTAATGCAAC


title: i8TFs_plus:GTCTGGTCCTT

description: A2lox.i8TFs with doxycycline

value: GTCTGGTCCTT


title: i8TFs_plus:GTTCATCGGAG

description: A2lox.i8TFs with doxycycline

value: GTTCATCGGAG


title: i8TFs_plus:GTCTGGTATTC

description: A2lox.i8TFs with doxycycline

value: GTCTGGTATTC


title: i8TFs_plus:GTTAGAACGCG

description: A2lox.i8TFs with doxycycline

value: GTTAGAACGCG


title: i8TFs_plus:GTTCGTCATGG

description: A2lox.i8TFs with doxycycline

value: GTTCGTCATGG


title: i8TFs_plus:GTTCAGGTATC

description: A2lox.i8TFs with doxycycline

value: GTTCAGGTATC


title: i8TFs_plus:GTCTGCAACGC

description: A2lox.i8TFs with doxycycline

value: GTCTGCAACGC


title: i8TFs_plus:GTTCCGATCAA

description: A2lox.i8TFs with doxycycline

value: GTTCCGATCAA


title: i8TFs_plus:GTTATTACTTG

description: A2lox.i8TFs with doxycycline

value: GTTATTACTTG


title: i8TFs_plus:GTCGTTGATTC

description: A2lox.i8TFs with doxycycline

value: GTCGTTGATTC


title: i8TFs_plus:GTTCAACGGTT

description: A2lox.i8TFs with doxycycline

value: GTTCAACGGTT


title: i8TFs_plus:GTCTTGGCATG

description: A2lox.i8TFs with doxycycline

value: GTCTTGGCATG


title: i8TFs_plus:GTTAGTCTCGT

description: A2lox.i8TFs with doxycycline

value: GTTAGTCTCGT


title: i8TFs_plus:GTTATAGGAAT

description: A2lox.i8TFs with doxycycline

value: GTTATAGGAAT


title: i8TFs_plus:GTTATATGCAA

description: A2lox.i8TFs with doxycycline

value: GTTATATGCAA


title: i8TFs_plus:GTTAACGACCT

description: A2lox.i8TFs with doxycycline

value: GTTAACGACCT


title: i8TFs_plus:GTCTACTGAAG

description: A2lox.i8TFs with doxycycline

value: GTCTACTGAAG


title: i8TFs_plus:GTCGTCTTCTA

description: A2lox.i8TFs with doxycycline

value: GTCGTCTTCTA


title: i8TFs_plus:GTCTATGGACC

description: A2lox.i8TFs with doxycycline

value: GTCTATGGACC


title: i8TFs_plus:GTCGGTAGGAG

description: A2lox.i8TFs with doxycycline

value: GTCGGTAGGAG


title: i8TFs_plus:GTTATAATTCT

description: A2lox.i8TFs with doxycycline

value: GTTATAATTCT


title: i8TFs_plus:GTCGTCTACGC

description: A2lox.i8TFs with doxycycline

value: GTCGTCTACGC


title: i8TFs_plus:GTCGGTCGTCT

description: A2lox.i8TFs with doxycycline

value: GTCGGTCGTCT


title: i8TFs_plus:GTCGTCATGCC

description: A2lox.i8TFs with doxycycline

value: GTCGTCATGCC


title: i8TFs_plus:GGTATCCTCAG

description: A2lox.i8TFs with doxycycline

value: GGTATCCTCAG


title: i8TFs_plus:GGTCTAACTTA

description: A2lox.i8TFs with doxycycline

value: GGTCTAACTTA


title: i8TFs_plus:GGTCGTTCAGA

description: A2lox.i8TFs with doxycycline

value: GGTCGTTCAGA


title: i8TFs_plus:GGTCTGATGCA

description: A2lox.i8TFs with doxycycline

value: GGTCTGATGCA


title: i8TFs_plus:GGTAGTTCAAC

description: A2lox.i8TFs with doxycycline

value: GGTAGTTCAAC


title: i8TFs_plus:GGTTACTCCTT

description: A2lox.i8TFs with doxycycline

value: GGTTACTCCTT


title: i8TFs_plus:GGTCGCAGAGA

description: A2lox.i8TFs with doxycycline

value: GGTCGCAGAGA


title: i8TFs_plus:GGTATCTGGAG

description: A2lox.i8TFs with doxycycline

value: GGTATCTGGAG


title: i8TFs_plus:GGTAGTCAGAC

description: A2lox.i8TFs with doxycycline

value: GGTAGTCAGAC


title: i8TFs_plus:GGTCTATGGAT

description: A2lox.i8TFs with doxycycline

value: GGTCTATGGAT


title: i8TFs_plus:GGTCTATTAGA

description: A2lox.i8TFs with doxycycline

value: GGTCTATTAGA


title: i8TFs_plus:CCAGTTCAGGA

description: A2lox.i8TFs with doxycycline

value: CCAGTTCAGGA


title: i8TFs_plus:CCATAAGGATG

description: A2lox.i8TFs with doxycycline

value: CCATAAGGATG


title: i8TFs_plus:GGTAGCTTAAG

description: A2lox.i8TFs with doxycycline

value: GGTAGCTTAAG


title: i8TFs_plus:CCGAACGGTTA

description: A2lox.i8TFs with doxycycline

value: CCGAACGGTTA


title: i8TFs_plus:GTTAGGATCGG

description: A2lox.i8TFs with doxycycline

value: GTTAGGATCGG


title: i8TFs_plus:CCGACGCGAGT

description: A2lox.i8TFs with doxycycline

value: CCGACGCGAGT


title: i8TFs_plus:GGTCTCTTCCG

description: A2lox.i8TFs with doxycycline

value: GGTCTCTTCCG


title: i8TFs_plus:GTCGCGGTAGC

description: A2lox.i8TFs with doxycycline

value: GTCGCGGTAGC


title: i8TFs_plus:CCATTCAGAGT

description: A2lox.i8TFs with doxycycline

value: CCATTCAGAGT


title: i8TFs_plus:CCGAACCAAGC

description: A2lox.i8TFs with doxycycline

value: CCGAACCAAGC


title: i8TFs_plus:GTTAGCTATGA

description: A2lox.i8TFs with doxycycline

value: GTTAGCTATGA


title: i8TFs_plus:CCGAATACTTC

description: A2lox.i8TFs with doxycycline

value: CCGAATACTTC


title: i8TFs_plus:CCAGCTAATAG

description: A2lox.i8TFs with doxycycline

value: CCAGCTAATAG


title: i8TFs_plus:CCATCTTCAAT

description: A2lox.i8TFs with doxycycline

value: CCATCTTCAAT


title: i8TFs_plus:CCAGCTAAGCT

description: A2lox.i8TFs with doxycycline

value: CCAGCTAAGCT


title: i8TFs_plus:CCATTATCAAG

description: A2lox.i8TFs with doxycycline

value: CCATTATCAAG


title: i8TFs_plus:CCAGCGTTACT

description: A2lox.i8TFs with doxycycline

value: CCAGCGTTACT


title: i8TFs_plus:CCATCAATTAG

description: A2lox.i8TFs with doxycycline

value: CCATCAATTAG


title: i8TFs_plus:CCATCGGAGTC

description: A2lox.i8TFs with doxycycline

value: CCATCGGAGTC


title: i8TFs_plus:CCAGAAGATAG

description: A2lox.i8TFs with doxycycline

value: CCAGAAGATAG


title: i8TFs_plus:GGTCTAGGATA

description: A2lox.i8TFs with doxycycline

value: GGTCTAGGATA


title: rrp6_1

city: Paris

first: Maxime

last: Wery

address: 26 rue d'Ulm

country: France

institute: Institut Curie

description: rRNA-depleted RNA

data_processing:
Reads were mapped to the S. pombe reference genome using version 2.0.6 of TopHat, with a tolerance of 3 mismatches and a maximum size for introns 5 Kb.
All subsequent bioinformatics analyses used reads uniquely mapped on the reference genome.
Tags densities were normalized on the ERCC Spike-In signals
Supplementary_files_format_and_content: A single tab-delimited text file including normalized tag densities (tag/nt) for each annotated feature (including CUTs) in each sample

organism: Schizosaccharomyces pombe

source_name: Yeast cells

extract_protocol:
Total RNA was extracted using standard hot phenol procedure. ERCC RNA Spike-In (2 µl of 1:100 dilution; Ambion) was added to 1 µg of total RNA, then rRNAs were depleted using the RiboMinus Eukaryote System v2 (Life Technologies).
Strand-specific total RNA-Seq libraries were prepared using the TruSeq Stranded Total RNA Sample Preparation Kit (Illumina). Paired-end sequencing (2x50 nt) of the libraries was performed on a HiSeq 2500 sequencer.

tag: genotype

value: rrp6 delta strain

tag: replicate

value: Biological replicate 1


title: rrp6_2

description: rRNA-depleted RNA

value: Biological replicate 2


title: i8TFs_plus:CCAATTGATGC

description: A2lox.i8TFs with doxycycline

value: CCAATTGATGC


title: WT_1

description: rRNA-depleted RNA

value: Wild-type strain


title: i8TFs_plus:CCATGGCCGAA

description: A2lox.i8TFs with doxycycline

value: CCATGGCCGAA


title: i8TFs_plus:CCATACGAGAA

description: A2lox.i8TFs with doxycycline

value: CCATACGAGAA


title: i8TFs_plus:CCATCAACTGC

description: A2lox.i8TFs with doxycycline

value: CCATCAACTGC


title: i8TFs_plus:CCAGTCTAGAA

description: A2lox.i8TFs with doxycycline

value: CCAGTCTAGAA


title: TSA_2_Input

data_processing:
After removal of the 5’-adapter sequence using cutadapt, reads were uniquely mapped to the S. pombe & S. cerevisiae reference genomes using version 2.2.5 of Bowtie, with a tolerance of 1 mismatch.
Bioinformatics analyses used uniquely mapped reads.
Tags densities were normalized either on the total number of uniquely mapped reads (IP & Input samples), or the signal for S. cerevisiae ribosomal proteins-coding genes.
Supplementary_files_format_and_content: A single tab-delimited text file including normalized tag densities (tag/nt) for each annotated feature in each sample

extract_protocol:
Biological duplicates of Rpb3-flag S. pombe cells were treated or not with TSA. After lysis, each S. pombe lysate was mixed with an aliquot of a lysate of Rpb3-flag S. cerevisiae cells (spike), in a 50:1 ratio.
Libraries were constructed according previously published protocol (Churchman and Weissman, 2012), with minor modifications, starting from 1L of exponentially growing cells. Ligation of DNA 3’-linker was performed as described (Marquardt et al., 2014), starting with 2-3 µg of purified nascent RNA. Ligated nascent RNA was then submitted to alkaline fragmentation for 20 minutes at 95°C. Single-end sequencing (50 nt) of the libraries was performed on a HiSeq 2500 sequencer.
NET-Seq

tag: treatment

value: Input


title: i8TFs_plus:CCATATAGATA

description: A2lox.i8TFs with doxycycline

value: CCATATAGATA


title: TSA_1_Input


title: i8TFs_plus:CAACCAGTTGC

description: A2lox.i8TFs with doxycycline

value: CAACCAGTTGC


title: i8TFs_plus:CCATAGCCTCA

description: A2lox.i8TFs with doxycycline

value: CCATAGCCTCA


title: TSA_2_IP

description:
NET_Seq_TSA_total_normalization.tab
NET_Seq_TSA_RP_cerevisiae_normalization.tab

value: IP


title: i8TFs_plus:CAACCGACGCG

description: A2lox.i8TFs with doxycycline

value: CAACCGACGCG


title: i8TFs_plus:CCATCTCGCTT

description: A2lox.i8TFs with doxycycline

value: CCATCTCGCTT


title: i8TFs_plus:CCATCGTTGGT

description: A2lox.i8TFs with doxycycline

value: CCATCGTTGGT


title: i8TFs_plus:CCAGACCATAT

description: A2lox.i8TFs with doxycycline

value: CCAGACCATAT


title: i8TFs_plus:ATCGGTCTGCC

description: A2lox.i8TFs with doxycycline

value: ATCGGTCTGCC


title: Untreated_2_IP

value: Biological replicate 2


title: i8TFs_plus:ATCTTCTCTTA

description: A2lox.i8TFs with doxycycline

value: ATCTTCTCTTA


title: Untreated_1_IP

value: Biological replicate 1


title: TSA_1_IP


title: i8TFs_plus:ATCCTTAAGGA

description: A2lox.i8TFs with doxycycline

value: ATCCTTAAGGA


title: WT_2

description: rRNA-depleted RNA

value: Wild-type strain


title: i8TFs_plus:CAACCAGCGCC

description: A2lox.i8TFs with doxycycline

value: CAACCAGCGCC


title: i8TFs_plus:ATGAACCTCGT

description: A2lox.i8TFs with doxycycline

value: ATGAACCTCGT


title: i8TFs_plus:ATGCGGTACTA

description: A2lox.i8TFs with doxycycline

value: ATGCGGTACTA


title: i8TFs_plus:AGTTGCGCGCG

description: A2lox.i8TFs with doxycycline

value: AGTTGCGCGCG


title: i8TFs_plus:ATTGGAGCCGA

description: A2lox.i8TFs with doxycycline

value: ATTGGAGCCGA


title: Untreated_2_Input

value: Input


title: i8TFs_plus:AGTTATCTCCG

description: A2lox.i8TFs with doxycycline

value: AGTTATCTCCG


title: i8TFs_plus:ATTGAGAGGCA

description: A2lox.i8TFs with doxycycline

value: ATTGAGAGGCA


title: i8TFs_plus:AGTTGACCTGG

description: A2lox.i8TFs with doxycycline

value: AGTTGACCTGG


title: i8TFs_plus:ATTGACCATCA

description: A2lox.i8TFs with doxycycline

value: ATTGACCATCA


title: i8TFs_plus:ATTGGTAGGTC

description: A2lox.i8TFs with doxycycline

value: ATTGGTAGGTC


title: i8TFs_plus:CCAACTCCTGC

description: A2lox.i8TFs with doxycycline

value: CCAACTCCTGC


title: i8TFs_plus:CAAGAACCGAT

description: A2lox.i8TFs with doxycycline

value: CAAGAACCGAT


title: i8TFs_plus:CCAAGACGCAT

description: A2lox.i8TFs with doxycycline

value: CCAAGACGCAT


title: i8TFs_plus:CCAACTCGCAG

description: A2lox.i8TFs with doxycycline

value: CCAACTCGCAG


title: i8TFs_plus:CAGAACGAGCT

description: A2lox.i8TFs with doxycycline

value: CAGAACGAGCT


title: i8TFs_plus:CAGAACGCCTC

description: A2lox.i8TFs with doxycycline

value: CAGAACGCCTC


title: i8TFs_plus:CCAAGAAGTTG

description: A2lox.i8TFs with doxycycline

value: CCAAGAAGTTG


title: i8TFs_plus:CAACCGGCGGA

description: A2lox.i8TFs with doxycycline

value: CAACCGGCGGA


title: i8TFs_plus:CAACCGCCAGC

description: A2lox.i8TFs with doxycycline

value: CAACCGCCAGC


title: i8TFs_plus:ATGATCGTTGG

description: A2lox.i8TFs with doxycycline

value: ATGATCGTTGG


title: i8TFs_plus:CCAACGATCCT

description: A2lox.i8TFs with doxycycline

value: CCAACGATCCT


title: i8TFs_plus:CAACCGCTACG

description: A2lox.i8TFs with doxycycline

value: CAACCGCTACG


title: i8TFs_plus:ATTGGAGAGAT

description: A2lox.i8TFs with doxycycline

value: ATTGGAGAGAT


title: i8TFs_plus:CAACTACGCCG

description: A2lox.i8TFs with doxycycline

value: CAACTACGCCG


title: i8TFs_plus:AGGATGATTCA

description: A2lox.i8TFs with doxycycline

value: AGGATGATTCA


title: i8TFs_plus:ATTGCCGAAGA

description: A2lox.i8TFs with doxycycline

value: ATTGCCGAAGA


title: i8TFs_plus:AGAAGAGCATG

description: A2lox.i8TFs with doxycycline

value: AGAAGAGCATG


title: i8TFs_plus:AGGAACTAGCG

description: A2lox.i8TFs with doxycycline

value: AGGAACTAGCG


title: i8TFs_plus:AGAAGACGCAG

description: A2lox.i8TFs with doxycycline

value: AGAAGACGCAG


title: i8TFs_plus:AGGAACTGAAC

description: A2lox.i8TFs with doxycycline

value: AGGAACTGAAC


title: i8TFs_plus:AGGCGTCGAGT

description: A2lox.i8TFs with doxycycline

value: AGGCGTCGAGT


title: i8TFs_plus:AGAGAACGACG

description: A2lox.i8TFs with doxycycline

value: AGAGAACGACG


title: i8TFs_plus:AGTTGGTTCGG

description: A2lox.i8TFs with doxycycline

value: AGTTGGTTCGG


title: i8TFs_plus:AGACCAACGGC

description: A2lox.i8TFs with doxycycline

value: AGACCAACGGC


title: i8TFs_plus:AGAATATCGTC

description: A2lox.i8TFs with doxycycline

value: AGAATATCGTC


title: i8TFs_plus:CCAACGACGAC

description: A2lox.i8TFs with doxycycline

value: CCAACGACGAC


title: i8TFs_plus:AGAATCAGTCT

description: A2lox.i8TFs with doxycycline

value: AGAATCAGTCT


title: i8TFs_plus:AGAAGGTACCT

description: A2lox.i8TFs with doxycycline

value: AGAAGGTACCT


title: i8TFs_plus:AGAATCAGATG

description: A2lox.i8TFs with doxycycline

value: AGAATCAGATG


title: i8TFs_plus:GTTACTAGGTC

description: A2lox.i8TFs with doxycycline

value: GTTACTAGGTC


title: i8TFs_plus:AGAGAACCAAC

description: A2lox.i8TFs with doxycycline

value: AGAGAACCAAC


title: i8TFs_plus:AGAAGTCGCTA

description: A2lox.i8TFs with doxycycline

value: AGAAGTCGCTA


title: i8TFs_plus:AGAATATCTAT

description: A2lox.i8TFs with doxycycline

value: AGAATATCTAT


title: i8TFs_plus:AGAATATACGT

description: A2lox.i8TFs with doxycycline

value: AGAATATACGT


title: i8TFs_plus:AGAACGTTGAT

description: A2lox.i8TFs with doxycycline

value: AGAACGTTGAT


title: i8TFs_plus:AGAATACGTTG

description: A2lox.i8TFs with doxycycline

value: AGAATACGTTG


title: i8TFs_plus:AGAAGTAACTG

description: A2lox.i8TFs with doxycycline

value: AGAAGTAACTG


title: i8TFs_plus:AGAAGCGCCGC

description: A2lox.i8TFs with doxycycline

value: AGAAGCGCCGC


title: i8TFs_plus:ACTTAATAGTA

description: A2lox.i8TFs with doxycycline

value: ACTTAATAGTA


title: Untreated_1_Input

value: Biological replicate 1

value: Input


title: i8TFs_plus:AGAAGCTCATT

description: A2lox.i8TFs with doxycycline

value: AGAAGCTCATT


title: i8TFs_plus:AGAACCGAACC

description: A2lox.i8TFs with doxycycline

value: AGAACCGAACC


title: i8TFs_plus:AGAACGCCATC

description: A2lox.i8TFs with doxycycline

value: AGAACGCCATC


title: i8TFs_plus:AGAGTAACTCG

description: A2lox.i8TFs with doxycycline

value: AGAGTAACTCG


title: i8TFs_plus:AAGAATAGACG

description: A2lox.i8TFs with doxycycline

value: AAGAATAGACG


title: i8TFs_plus:AAGAATATATA

description: A2lox.i8TFs with doxycycline

value: AAGAATATATA


title: i8TFs_plus:AGAAGCCTCCA

description: A2lox.i8TFs with doxycycline

value: AGAAGCCTCCA


title: i8TFs_plus:AAGAGAATATC

description: A2lox.i8TFs with doxycycline

value: AAGAGAATATC


title: i8TFs_plus:AGAAGAGAAGT

description: A2lox.i8TFs with doxycycline

value: AGAAGAGAAGT


title: i8TFs_plus:AAGAAGTTGAC

description: A2lox.i8TFs with doxycycline

value: AAGAAGTTGAC


title: i8TFs_plus:AAGAGACGCTC

description: A2lox.i8TFs with doxycycline

value: AAGAGACGCTC


title: i8TFs_minus:TGATATTGCTC

description: A2lox.i8TFs without doxycycline

value: TGATATTGCTC


title: i8TFs_plus:AAGAGAGAGAT

description: A2lox.i8TFs with doxycycline

value: AAGAGAGAGAT


title: i8TFs_plus:AAGAGAGTCTA

description: A2lox.i8TFs with doxycycline

value: AAGAGAGTCTA


title: i8TFs_minus:TGCTGGAACGA

description: A2lox.i8TFs without doxycycline

value: TGCTGGAACGA


title: i8TFs_plus:AAGAGAGCAGA

description: A2lox.i8TFs with doxycycline

value: AAGAGAGCAGA


title: i8TFs_minus:TGCGGTCGCGT

description: A2lox.i8TFs without doxycycline

value: TGCGGTCGCGT


title: i8TFs_plus:AAGAATAAGTC

description: A2lox.i8TFs with doxycycline

value: AAGAATAAGTC


title: i8TFs_plus:ACTCTATTCAG

description: A2lox.i8TFs with doxycycline

value: ACTCTATTCAG


title: i8TFs_minus:TGAGGCTGGAA

description: A2lox.i8TFs without doxycycline

value: TGAGGCTGGAA


title: i8TFs_minus:TGCGTAGTCGG

description: A2lox.i8TFs without doxycycline

value: TGCGTAGTCGG


title: i8TFs_minus:TGCTGCCATTG

description: A2lox.i8TFs without doxycycline

value: TGCTGCCATTG


title: i8TFs_minus:TGAGGTCGATC

description: A2lox.i8TFs without doxycycline

value: TGAGGTCGATC


title: i8TFs_plus:AGAAGATTGGC

description: A2lox.i8TFs with doxycycline

value: AGAAGATTGGC


title: i8TFs_minus:TGAGTCCGTTA

description: A2lox.i8TFs without doxycycline

value: TGAGTCCGTTA


title: i8TFs_minus:TGCGATGGAGA

description: A2lox.i8TFs without doxycycline

value: TGCGATGGAGA


title: i8TFs_minus:TCAATTACGAC

description: A2lox.i8TFs without doxycycline

value: TCAATTACGAC


title: i8TFs_minus:TGCGATACCTC

description: A2lox.i8TFs without doxycycline

value: TGCGATACCTC


title: i8TFs_minus:TCAAGCGTTGG

description: A2lox.i8TFs without doxycycline

value: TCAAGCGTTGG


title: i8TFs_minus:TCCTGAATTCT

description: A2lox.i8TFs without doxycycline

value: TCCTGAATTCT


title: i8TFs_minus:TGACGGTAGAA

description: A2lox.i8TFs without doxycycline

value: TGACGGTAGAA


title: i8TFs_minus:TGAACCAATTG

description: A2lox.i8TFs without doxycycline

value: TGAACCAATTG


title: i8TFs_minus:TCCTTCCATGC

description: A2lox.i8TFs without doxycycline

value: TCCTTCCATGC


title: i8TFs_minus:TCCTCGACTTC

description: A2lox.i8TFs without doxycycline

value: TCCTCGACTTC


title: i8TFs_minus:TCAACTGATTG

description: A2lox.i8TFs without doxycycline

value: TCAACTGATTG


title: i8TFs_minus:TCCTTCCTCCG

description: A2lox.i8TFs without doxycycline

value: TCCTTCCTCCG


title: i8TFs_minus:TCCGTCCTTAG

description: A2lox.i8TFs without doxycycline

value: TCCGTCCTTAG


title: i8TFs_minus:TATTGATCCAA

description: A2lox.i8TFs without doxycycline

value: TATTGATCCAA


title: i8TFs_minus:TCCTATAGTTC

description: A2lox.i8TFs without doxycycline

value: TCCTATAGTTC


title: i8TFs_minus:TCCAAGCGATG

description: A2lox.i8TFs without doxycycline

value: TCCAAGCGATG


title: i8TFs_minus:TGAGTTCTCTT

description: A2lox.i8TFs without doxycycline

value: TGAGTTCTCTT


title: i8TFs_minus:TATGGCTCTTA

description: A2lox.i8TFs without doxycycline

value: TATGGCTCTTA


title: i8TFs_minus:TATCGGATAGC

description: A2lox.i8TFs without doxycycline

value: TATCGGATAGC


title: i8TFs_minus:GTCCAATGCGC

description: A2lox.i8TFs without doxycycline

value: GTCCAATGCGC


title: i8TFs_minus:TATCTTGGATA

description: A2lox.i8TFs without doxycycline

value: TATCTTGGATA


title: i8TFs_minus:GTCCTTGGTAG

description: A2lox.i8TFs without doxycycline

value: GTCCTTGGTAG


title: i8TFs_minus:GTTGGCGAGTT

description: A2lox.i8TFs without doxycycline

value: GTTGGCGAGTT


title: i8TFs_minus:GTTGGTAGCCT

description: A2lox.i8TFs without doxycycline

value: GTTGGTAGCCT


title: i8TFs_minus:TCCTGGCTGGT

description: A2lox.i8TFs without doxycycline

value: TCCTGGCTGGT


title: i8TFs_minus:TCCATCATCGT

description: A2lox.i8TFs without doxycycline

value: TCCATCATCGT


title: i8TFs_minus:GTACGGTATGA

description: A2lox.i8TFs without doxycycline

value: GTACGGTATGA


title: i8TFs_minus:GTCCGTTGCCG

description: A2lox.i8TFs without doxycycline

value: GTCCGTTGCCG


title: i8TFs_minus:GTCATTGGCGA

description: A2lox.i8TFs without doxycycline

value: GTCATTGGCGA


title: i8TFs_minus:GGTTCTTGGCT

description: A2lox.i8TFs without doxycycline

value: GGTTCTTGGCT


title: i8TFs_minus:GGTTGGTCCGT

description: A2lox.i8TFs without doxycycline

value: GGTTGGTCCGT


title: i8TFs_minus:GTATTGAATTG

description: A2lox.i8TFs without doxycycline

value: GTATTGAATTG


title: i8TFs_minus:GTATCTCCGGC

description: A2lox.i8TFs without doxycycline

value: GTATCTCCGGC


title: i8TFs_minus:GTATGCTTCAT

description: A2lox.i8TFs without doxycycline

value: GTATGCTTCAT


title: i8TFs_minus:GTATTGCCTGA

description: A2lox.i8TFs without doxycycline

value: GTATTGCCTGA


title: i8TFs_minus:GGTTGATATCC

description: A2lox.i8TFs without doxycycline

value: GGTTGATATCC


title: i8TFs_minus:GTAACGACTCG

description: A2lox.i8TFs without doxycycline

value: GTAACGACTCG


title: i8TFs_minus:GGTTGGTCATA

description: A2lox.i8TFs without doxycycline

value: GGTTGGTCATA


title: i8TFs_minus:GGTTCGTCTTG

description: A2lox.i8TFs without doxycycline

value: GGTTCGTCTTG


title: i8TFs_minus:GTATTCGCGAC

description: A2lox.i8TFs without doxycycline

value: GTATTCGCGAC


title: i8TFs_minus:GTATACCAGAT

description: A2lox.i8TFs without doxycycline

value: GTATACCAGAT


title: i8TFs_minus:GTATACCTATA

description: A2lox.i8TFs without doxycycline

value: GTATACCTATA


title: i8TFs_minus:GGTTCGGATAA

description: A2lox.i8TFs without doxycycline

value: GGTTCGGATAA


title: i8TFs_minus:GGTTAGGCGCA

description: A2lox.i8TFs without doxycycline

value: GGTTAGGCGCA


title: i8TFs_minus:GGTTAGATGGC

description: A2lox.i8TFs without doxycycline

value: GGTTAGATGGC


title: i8TFs_minus:GGTTGGCTACC

description: A2lox.i8TFs without doxycycline

value: GGTTGGCTACC


title: i8TFs_minus:GGTTGGAATCA

description: A2lox.i8TFs without doxycycline

value: GGTTGGAATCA


title: i8TFs_minus:GCTTCGCGAGT

description: A2lox.i8TFs without doxycycline

value: GCTTCGCGAGT


title: i8TFs_minus:GGCTCGTTAGC

description: A2lox.i8TFs without doxycycline

value: GGCTCGTTAGC


title: i8TFs_minus:GGTTCCAATTC

description: A2lox.i8TFs without doxycycline

value: GGTTCCAATTC


title: i8TFs_minus:GGTTATCTCGA

description: A2lox.i8TFs without doxycycline

value: GGTTATCTCGA


title: i8TFs_minus:GCTTGGTAGAC

description: A2lox.i8TFs without doxycycline

value: GCTTGGTAGAC


title: i8TFs_minus:GGCGTTGACTG

description: A2lox.i8TFs without doxycycline

value: GGCGTTGACTG


title: i8TFs_minus:GGCGGTCTACT

description: A2lox.i8TFs without doxycycline

value: GGCGGTCTACT


title: i8TFs_minus:GGCGGTCCTCA

description: A2lox.i8TFs without doxycycline

value: GGCGGTCCTCA


title: i8TFs_minus:GTAGGATAGGA

description: A2lox.i8TFs without doxycycline

value: GTAGGATAGGA


title: i8TFs_minus:GCTTGGTCCAA

description: A2lox.i8TFs without doxycycline

value: GCTTGGTCCAA


title: i8TFs_minus:GCTGGCTTCAG

description: A2lox.i8TFs without doxycycline

value: GCTGGCTTCAG


title: i8TFs_minus:GCTGGATCGGA

description: A2lox.i8TFs without doxycycline

value: GCTGGATCGGA


title: i8TFs_minus:GGCGTAGCTAT

description: A2lox.i8TFs without doxycycline

value: GGCGTAGCTAT


title: i8TFs_minus:GGCGGATTGGT

description: A2lox.i8TFs without doxycycline

value: GGCGGATTGGT


title: i8TFs_minus:GCTTATGCTGC

description: A2lox.i8TFs without doxycycline

value: GCTTATGCTGC


title: i8TFs_minus:GCTTCTCGAAG

description: A2lox.i8TFs without doxycycline

value: GCTTCTCGAAG


title: i8TFs_minus:GCTTATGGAGT

description: A2lox.i8TFs without doxycycline

value: GCTTATGGAGT


title: i8TFs_minus:GCTTGGATAGT

description: A2lox.i8TFs without doxycycline

value: GCTTGGATAGT


title: i8TFs_minus:GCTTAGTATTC

description: A2lox.i8TFs without doxycycline

value: GCTTAGTATTC


title: i8TFs_minus:GGATGGAGAGA

description: A2lox.i8TFs without doxycycline

value: GGATGGAGAGA


title: i8TFs_minus:CCTTCTTATTA

description: A2lox.i8TFs without doxycycline

value: CCTTCTTATTA


title: i8TFs_minus:CCTCGTACTAA

description: A2lox.i8TFs without doxycycline

value: CCTCGTACTAA


title: i8TFs_minus:GCTGGCAGCCG

description: A2lox.i8TFs without doxycycline

value: GCTGGCAGCCG


title: i8TFs_minus:CCTTGCTCAAC

description: A2lox.i8TFs without doxycycline

value: CCTTGCTCAAC


title: i8TFs_minus:CCTCGGTCTAT

description: A2lox.i8TFs without doxycycline

value: CCTCGGTCTAT


title: i8TFs_minus:CGCGCGCAGCC

description: A2lox.i8TFs without doxycycline

value: CGCGCGCAGCC


title: i8TFs_minus:CGCGGCAGCCG

description: A2lox.i8TFs without doxycycline

value: CGCGGCAGCCG


title: i8TFs_minus:CGGAGCTTACC

description: A2lox.i8TFs without doxycycline

value: CGGAGCTTACC


title: i8TFs_minus:CGAAGACCGGT

description: A2lox.i8TFs without doxycycline

value: CGAAGACCGGT


title: i8TFs_minus:CCTTCAGCTCT

description: A2lox.i8TFs without doxycycline

value: CCTTCAGCTCT


title: i8TFs_minus:CCTCCAGCGTT

description: A2lox.i8TFs without doxycycline

value: CCTCCAGCGTT


title: i8TFs_minus:CCTGGTCGGTA

description: A2lox.i8TFs without doxycycline

value: CCTGGTCGGTA


title: i8TFs_minus:CCTGGTTGCAG

description: A2lox.i8TFs without doxycycline

value: CCTGGTTGCAG


title: i8TFs_minus:CCTGGAACCGC

description: A2lox.i8TFs without doxycycline

value: CCTGGAACCGC


title: i8TFs_minus:CCTGGCAAGTT

description: A2lox.i8TFs without doxycycline

value: CCTGGCAAGTT


title: i8TFs_minus:CCTATTGAATT

description: A2lox.i8TFs without doxycycline

value: CCTATTGAATT


title: i8TFs_minus:CCTACGGCCAG

description: A2lox.i8TFs without doxycycline

value: CCTACGGCCAG


title: i8TFs_minus:CCGTTACCTCG

description: A2lox.i8TFs without doxycycline

value: CCGTTACCTCG


title: i8TFs_minus:CCGTCCATCCT

description: A2lox.i8TFs without doxycycline

value: CCGTCCATCCT


title: i8TFs_minus:GGCATACTGAG

description: A2lox.i8TFs without doxycycline

value: GGCATACTGAG


title: i8TFs_minus:CCGTTATCTAT

description: A2lox.i8TFs without doxycycline

value: CCGTTATCTAT


title: i8TFs_minus:CCTGATGCTAT

description: A2lox.i8TFs without doxycycline

value: CCTGATGCTAT


title: i8TFs_minus:CCAATGCTTAG

description: A2lox.i8TFs without doxycycline

value: CCAATGCTTAG


title: i8TFs_minus:CCAACCGCGTC

description: A2lox.i8TFs without doxycycline

value: CCAACCGCGTC


title: i8TFs_minus:CATGGTTGCTC

description: A2lox.i8TFs without doxycycline

value: CATGGTTGCTC


title: i8TFs_minus:CCAAGCGGTCC

description: A2lox.i8TFs without doxycycline

value: CCAAGCGGTCC


title: i8TFs_minus:CCAATAGTTAT

description: A2lox.i8TFs without doxycycline

value: CCAATAGTTAT


title: i8TFs_minus:CCAAGCTATAT

description: A2lox.i8TFs without doxycycline

value: CCAAGCTATAT


title: i8TFs_minus:CCAATAGGAAG

description: A2lox.i8TFs without doxycycline

value: CCAATAGGAAG


title: i8TFs_minus:CATCAATCGGT

description: A2lox.i8TFs without doxycycline

value: CATCAATCGGT


title: i8TFs_minus:CATCGGCTTAG

description: A2lox.i8TFs without doxycycline

value: CATCGGCTTAG


title: i8TFs_minus:CATCCTGGTTG

description: A2lox.i8TFs without doxycycline

value: CATCCTGGTTG


title: i8TFs_minus:CATCGATAGTC

description: A2lox.i8TFs without doxycycline

value: CATCGATAGTC


title: i8TFs_minus:CCAAGTAACCT

description: A2lox.i8TFs without doxycycline

value: CCAAGTAACCT


title: i8TFs_minus:CCTCATACCGG

description: A2lox.i8TFs without doxycycline

value: CCTCATACCGG


title: i8TFs_minus:CAGCTTGGATT

description: A2lox.i8TFs without doxycycline

value: CAGCTTGGATT


title: i8TFs_minus:AGGTTAATATT

description: A2lox.i8TFs without doxycycline

value: AGGTTAATATT


title: i8TFs_minus:AGTAGGCGGCA

description: A2lox.i8TFs without doxycycline

value: AGTAGGCGGCA


title: i8TFs_minus:ATTGAGTATTG

description: A2lox.i8TFs without doxycycline

value: ATTGAGTATTG


title: i8TFs_minus:ACGTCAACTCT

description: A2lox.i8TFs without doxycycline

value: ACGTCAACTCT


title: i8TFs_minus:ATGGTTGATGC

description: A2lox.i8TFs without doxycycline

value: ATGGTTGATGC


title: i8TFs_minus:AATAACGCGGC

description: A2lox.i8TFs without doxycycline

value: AATAACGCGGC


title: i8TFs_minus:ACCAAGCCAAC

description: A2lox.i8TFs without doxycycline

value: ACCAAGCCAAC


title: i8TFs_minus:ATGGCCGTATG

description: A2lox.i8TFs without doxycycline

value: ATGGCCGTATG


title: i8TFs_minus:ACGATATTCGA

description: A2lox.i8TFs without doxycycline

value: ACGATATTCGA


title: i8TFs_minus:ATTATATCTCA

description: A2lox.i8TFs without doxycycline

value: ATTATATCTCA


title: i8TFs_minus:ACCAAGAAGGC

description: A2lox.i8TFs without doxycycline

value: ACCAAGAAGGC


title: i8TFs_minus:ATTATATTAGG

description: A2lox.i8TFs without doxycycline

value: ATTATATTAGG


title: i8TFs_minus:ACCAACTGGAC

description: A2lox.i8TFs without doxycycline

value: ACCAACTGGAC


title: i8TFs_minus:ACGAAGAGAGG

description: A2lox.i8TFs without doxycycline

value: ACGAAGAGAGG


title: i8TFs_minus:ACCAACTTACC

description: A2lox.i8TFs without doxycycline

value: ACCAACTTACC


title: i8TFs_minus:ACGAATGACCA

description: A2lox.i8TFs without doxycycline

value: ACGAATGACCA


title: i8TFs_minus:AGGTCGACGGT

description: A2lox.i8TFs without doxycycline

value: AGGTCGACGGT


title: i8TFs_minus:ACGAATTGATA

description: A2lox.i8TFs without doxycycline

value: ACGAATTGATA


title: i8TFs_minus:ACCGAACTATC

description: A2lox.i8TFs without doxycycline

value: ACCGAACTATC


title: i8TFs_minus:ACGACCGCAGT

description: A2lox.i8TFs without doxycycline

value: ACGACCGCAGT


title: i8TFs_minus:ACCTCTCTTGG

description: A2lox.i8TFs without doxycycline

value: ACCTCTCTTGG


title: i8TFs_minus:AAGATAAGATG

description: A2lox.i8TFs without doxycycline

value: AAGATAAGATG


title: i8TFs_minus:AGGTTGACTTA

description: A2lox.i8TFs without doxycycline

value: AGGTTGACTTA


title: i8TFs_minus:AAGCAACGGAG

description: A2lox.i8TFs without doxycycline

value: AAGCAACGGAG


title: i8TFs_minus:ACGCAATGGCT

description: A2lox.i8TFs without doxycycline

value: ACGCAATGGCT


title: i8TFs_minus:ACCTGCAACCA

description: A2lox.i8TFs without doxycycline

value: ACCTGCAACCA


title: i8TFs_minus:ACCATCAGCAG

description: A2lox.i8TFs without doxycycline

value: ACCATCAGCAG


title: i8TFs_minus:ACCGAACGGCG

description: A2lox.i8TFs without doxycycline

value: ACCGAACGGCG


title: i8TFs_minus:ACCATAATACT

description: A2lox.i8TFs without doxycycline

value: ACCATAATACT


title: i8TFs_minus:ACCAGACGCGT

description: A2lox.i8TFs without doxycycline

value: ACCAGACGCGT


title: i8TFs_minus:AACTGGCAGGT

description: A2lox.i8TFs without doxycycline

value: AACTGGCAGGT


title: i8TFs_minus:ACCTCTCCTAT

description: A2lox.i8TFs without doxycycline

value: ACCTCTCCTAT


title: i8TFs_minus:AACTATAAGAG

description: A2lox.i8TFs without doxycycline

value: AACTATAAGAG


title: i8TFs_minus:ACCAATGACGT

description: A2lox.i8TFs without doxycycline

value: ACCAATGACGT


title: E_plus:TTGATGATTGG

description: A2lox.Empty with doxycycline

value: TTGATGATTGG


title: E_plus:TTGATCGTCGA

description: A2lox.Empty with doxycycline

value: TTGATCGTCGA


title: i8TFs_minus:AAGAGATAGTC

description: A2lox.i8TFs without doxycycline

value: AAGAGATAGTC


title: i8TFs_minus:AAGAGATCATG

description: A2lox.i8TFs without doxycycline

value: AAGAGATCATG


title: i8TFs_minus:ACCGCATCCAA

description: A2lox.i8TFs without doxycycline

value: ACCGCATCCAA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell95]

data_processing:
Paired-end reads were mapped to GRCm38 using STAR (2.4).
Duplicate reads were removed using samtools
Libraries with < 1 million uniquely mapped reads were removed
uniquely mapping reads were counted using featureCounts(1.4.6)
Genome_build: GRCm38
Supplementary_files_format_and_content: read count expression matrix

source_name: BL-CFC day1 of culture (eVSM +/- dox for 24h)

growth_protocol: Cells were cultured in BL-CFC culture for 1 day before sorting for eVSM cells. Then, sorted eVSM were cultured in hemogenic endothelium medium for 24h with or without doxycycline. Cells from the two conditions were then mixed at a 1:1 ratio.

extract_protocol:
Cells were isolated using two Fluidigm C1 chips, RNA was extracted and libraries prepared. ERCC spike-ins were added.
Nextera XT DNA (Illumina), Libraries were sequenced on four lanes of Illumina HiSeq 2000

value: CGAGGCTGTCTCTCCG

value: eVSM +/- dox for 24h

value: H


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell90]

value: AGGCAGAATCTCTCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell96]

value: AAGAGGCATCTCTCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell92]

value: GGACTCCTTCTCTCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell94]

value: CTCTCTACTCTCTCCG


title: E_plus:TCGTTGCGTAC

description: A2lox.Empty with doxycycline

value: TCGTTGCGTAC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell93]

value: TAGGCATGTCTCTCCG


title: E_plus:TTGATTCAGAT

description: A2lox.Empty with doxycycline

value: TTGATTCAGAT


title: i8TFs_minus:AAGAGCCTATA

description: A2lox.i8TFs without doxycycline

value: AAGAGCCTATA


title: E_plus:CTATGGTTAGC

description: A2lox.Empty with doxycycline

value: CTATGGTTAGC


title: E_plus:CTCTAACTAGA

description: A2lox.Empty with doxycycline

value: CTCTAACTAGA


title: E_plus:TCTATGATTCC

description: A2lox.Empty with doxycycline

value: TCTATGATTCC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell91]

value: TCCTGAGCTCTCTCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell89]

value: CGTACTAGTCTCTCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell86]

value: GCTCATGATCTCTCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell88]

value: TAAGGCGATCTCTCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell83]

value: CGAGGCTGCGTCTAAT

value: eVSM +/- dox for 24h

value: G


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell84]

value: AAGAGGCACGTCTAAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell9]

value: TAGGCATGCTCTCTAT

value: A


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell85]

value: GTAGAGGATCTCTCCG

value: H


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell87]

value: ATCTCAGGTCTCTCCG


title: i8TFs_minus:AAGAGCCAGCA

description: A2lox.i8TFs without doxycycline

value: AAGAGCCAGCA


title: i8TFs_minus:AACTGAGTTCG

description: A2lox.i8TFs without doxycycline

value: AACTGAGTTCG


title: E_plus:CGTTGGTACTG

description: A2lox.Empty with doxycycline

value: CGTTGGTACTG


title: E_plus:TTGATCGCGCA

description: A2lox.Empty with doxycycline

value: TTGATCGCGCA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell82]

value: CTCTCTACCGTCTAAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell80]

value: GGACTCCTCGTCTAAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell81]

value: TAGGCATGCGTCTAAT


title: E_plus:CCGGTCCAGAG

description: A2lox.Empty with doxycycline

value: CCGGTCCAGAG


title: E_plus:TTGCAAGCGAT

description: A2lox.Empty with doxycycline

value: TTGCAAGCGAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell8]

value: GGACTCCTCTCTCTAT

value: eVSM +/- dox for 24h


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell79]

value: TCCTGAGCCGTCTAAT

value: G


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell77]

value: CGTACTAGCGTCTAAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell74]

value: GCTCATGACGTCTAAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell76]

value: TAAGGCGACGTCTAAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell73]

value: GTAGAGGACGTCTAAT


title: E_plus:TTGCCATCATT

description: A2lox.Empty with doxycycline

value: TTGCCATCATT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell75]

value: ATCTCAGGCGTCTAAT


title: E_plus:TTGCCTATGGC

description: A2lox.Empty with doxycycline

value: TTGCCTATGGC


title: E_plus:TTGCAGTCTAC

description: A2lox.Empty with doxycycline

value: TTGCAGTCTAC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell78]

value: AGGCAGAACGTCTAAT


title: E_plus:TTGCGGACGCC

description: A2lox.Empty with doxycycline

value: TTGCGGACGCC


title: E_plus:TTGCGGAGCCG

description: A2lox.Empty with doxycycline

value: TTGCGGAGCCG


title: E_plus:TTGCGTATCTG

description: A2lox.Empty with doxycycline

value: TTGCGTATCTG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell70]

value: CTCTCTACCTAAGCCT

value: F


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell69]

value: TAGGCATGCTAAGCCT

value: eVSM +/- dox for 24h


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell7]

value: TCCTGAGCCTCTCTAT

value: A


title: E_plus:CGATTCTAGAT

description: A2lox.Empty with doxycycline

value: CGATTCTAGAT


title: E_plus:TTCTGGTTAAC

description: A2lox.Empty with doxycycline

value: TTCTGGTTAAC


title: E_plus:TTCTTAAGATG

description: A2lox.Empty with doxycycline

value: TTCTTAAGATG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell68]

value: GGACTCCTCTAAGCCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell67]

value: TCCTGAGCCTAAGCCT


title: E_plus:TTGAAGCTTCT

description: A2lox.Empty with doxycycline

value: TTGAAGCTTCT


title: E_plus:TTGAAGCTAGG

description: A2lox.Empty with doxycycline

value: TTGAAGCTAGG


title: E_plus:TTGAGACTGGC

description: A2lox.Empty with doxycycline

value: TTGAGACTGGC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell66]

value: AGGCAGAACTAAGCCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell71]

value: CGAGGCTGCTAAGCCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell64]

value: TAAGGCGACTAAGCCT


title: E_plus:TTCGCGGAGCA

description: A2lox.Empty with doxycycline

value: TTCGCGGAGCA


title: E_plus:TTCGGATAATG

description: A2lox.Empty with doxycycline

value: TTCGGATAATG


title: E_plus:TTCGCGCGTCA

description: A2lox.Empty with doxycycline

value: TTCGCGCGTCA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell59]

value: CGAGGCTGAAGGAGTA

value: eVSM +/- dox for 24h

value: E


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell6]

value: AGGCAGAACTCTCTAT

value: A


title: E_plus:TTCGGTCGCCA

description: A2lox.Empty with doxycycline

value: TTCGGTCGCCA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell72]

value: AAGAGGCACTAAGCCT

value: F


title: E_plus:TTCGCGGAATC

description: A2lox.Empty with doxycycline

value: TTCGCGGAATC


title: E_plus:TTCTCCGAGGT

description: A2lox.Empty with doxycycline

value: TTCTCCGAGGT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell60]

value: AAGAGGCAAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell58]

value: CTCTCTACAAGGAGTA


title: E_plus:TTCGTCTCTAA

description: A2lox.Empty with doxycycline

value: TTCGTCTCTAA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell61]

value: GTAGAGGACTAAGCCT


title: E_plus:TTGATAAGTAC

description: A2lox.Empty with doxycycline

value: TTGATAAGTAC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell55]

value: TCCTGAGCAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell54]

value: AGGCAGAAAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell56]

value: GGACTCCTAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell57]

value: TAGGCATGAAGGAGTA

value: eVSM +/- dox for 24h


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell65]

value: CGTACTAGCTAAGCCT


title: E_plus:TGGCGAGTTGC

description: A2lox.Empty with doxycycline

value: TGGCGAGTTGC


title: E_plus:TGGCCGAGCTG

description: A2lox.Empty with doxycycline

value: TGGCCGAGCTG


title: E_plus:TGGTCTAGCGG

description: A2lox.Empty with doxycycline

value: TGGTCTAGCGG


title: E_plus:TGGTCCTGAGC

description: A2lox.Empty with doxycycline

value: TGGTCCTGAGC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell63]

value: ATCTCAGGCTAAGCCT

value: F


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell62]

value: GCTCATGACTAAGCCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell53]

value: CGTACTAGAAGGAGTA

value: E


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell52]

value: TAAGGCGAAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell51]

value: ATCTCAGGAAGGAGTA


title: E_plus:TGGCGCGCAAG

description: A2lox.Empty with doxycycline

value: TGGCGCGCAAG


title: E_plus:TGGTAGCTATA

description: A2lox.Empty with doxycycline

value: TGGTAGCTATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell5]

value: CGTACTAGCTCTCTAT

value: A


title: E_plus:TGGCGAGACTG

description: A2lox.Empty with doxycycline

value: TGGCGAGACTG


title: ph505 mutant cells 7

city: Basel

first: Renato

last: Paro

address: Mattenstrasse 26

department: D-BSSE

country: Switzerland

institute: ETH Zurich

description:
tumor.7
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt

data_processing:
Adaptor clipping / Quality trimming with Trimmomatic (v0.30), parameters: ILLUMINACLIP:TruSeq2-SE.fa:2:30:10 TRAILING:3 LEADING:3 MINLEN:24
Alignment with STAR (v2.3.0e), parameters: default.
Duplicate removal with Picard Tools MarkDuplicates (v1.121), parameters: REMOVE_DUPLICATES=true
Counting of transcripts with HTSeq htseq-count (v0.6.1).
Importing counts for each sample, merging technical replicates with R (v3.1.0).
Genome_build: Drosophila melanogaster Apr. 2006 (BDGP R5/dm3) assembly (Release 5)
Supplementary_files_format_and_content: Counttable_collapsed.txt: Tab-delimited text file contains counts for each gene. Technical replicates collapsed into single columns.

organism: Drosophila melanogaster

source_name: ph505 eye-antennal imaginal discs

growth_protocol: Flies were maintained on standard food at 25°C and 60% humidity, under a 12hr light: 12hr dark cycle.

extract_protocol:
Total RNA was extracted from FACS-sorted samples by using PicoPure RNA isolation kit, including a step of DNase treatment.
We prepared sequencing libraries according to Smart-Seq2 protocol. Two technical replicates per sample of a total of 11 samples, including 7 tumor and 4 control (22 libraries).

treatment_protocol: ph505 eye-antennal tissues were FACS-sorted based on GFP signal. GFP+ pool of cells correspond to ph505 tumor cells, while GFP- pool of cells correspond to wild-type surrounding cells.

tag: genotype/variation

value: FRT19A,ph505 / tubGal80,FRT19A; eyFlp, act>>gal4, UAS-GFP/+

tag: tissue

value: ph505 eye-antennal tissue

tag: facs-sorted cells

value: GFP+ (ph505 tumor cells)

tag: experiment


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell49]

value: GTAGAGGAAAGGAGTA

value: eVSM +/- dox for 24h


title: ph505 mutant cells 5

description:
tumor.5
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt


title: ph505 mutant cells 6

description:
tumor.6
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt


title: E_plus:TGGTATAAGTA

description: A2lox.Empty with doxycycline

value: TGGTATAAGTA


title: control cells 4

description:
control.4
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt

value: GFP- (control cells)


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell48]

value: AAGAGGCAACTGCATA

value: D


title: E_plus:TGGTCCATTGG

description: A2lox.Empty with doxycycline

value: TGGTCCATTGG


title: E_plus:TGGTTAGATTG

description: A2lox.Empty with doxycycline

value: TGGTTAGATTG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell47]

value: CGAGGCTGACTGCATA


title: E_plus:TGGTCAGTTCG

description: A2lox.Empty with doxycycline

value: TGGTCAGTTCG


title: E_plus:TGGTCCAGATT

description: A2lox.Empty with doxycycline

value: TGGTCCAGATT


title: ph505 mutant cells 4

description:
tumor.4
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell46]

value: CTCTCTACACTGCATA


title: control cells 3

description:
control.3
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt


title: ph505 mutant cells 3

description:
tumor.3
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt


title: E_plus:TGGATACGCCA

description: A2lox.Empty with doxycycline

value: TGGATACGCCA


title: control cells 2

description:
control.2
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell44]

value: GGACTCCTACTGCATA


title: E_plus:TGGATAAGTCG

description: A2lox.Empty with doxycycline

value: TGGATAAGTCG


title: E_plus:TGGAGTTGACC

description: A2lox.Empty with doxycycline

value: TGGAGTTGACC


title: ph505 mutant cells 2

description:
tumor.2
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt

value: FRT19A,ph505 / tubGal80,FRT19A; eyFlp, act>>gal4, UAS-GFP/+

value: ph505 eye-antennal tissue

value: GFP+ (ph505 tumor cells)


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell50]

value: GCTCATGAAAGGAGTA

value: eVSM +/- dox for 24h

value: E


title: E_plus:TGGCTGCGCCT

description: A2lox.Empty with doxycycline

value: TGGCTGCGCCT


title: E_plus:TGGCAGGATGC

description: A2lox.Empty with doxycycline

value: TGGCAGGATGC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell42]

value: AGGCAGAAACTGCATA

value: D


title: E_plus:TGGTAATGAGT

description: A2lox.Empty with doxycycline

value: TGGTAATGAGT


title: E_plus:TGGTACTTCAA

description: A2lox.Empty with doxycycline

value: TGGTACTTCAA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell40]

value: TAAGGCGAACTGCATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell41]

value: CGTACTAGACTGCATA


title: E_plus:TGGATGCTGAG

description: A2lox.Empty with doxycycline

value: TGGATGCTGAG


title: E_plus:TGGCAACCAGC

description: A2lox.Empty with doxycycline

value: TGGCAACCAGC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell39]

value: ATCTCAGGACTGCATA


title: E_plus:TGGATGGCAGT

description: A2lox.Empty with doxycycline

value: TGGATGGCAGT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell4]

value: TAAGGCGACTCTCTAT

value: A


title: E_plus:TGGCTACGTCC

description: A2lox.Empty with doxycycline

value: TGGCTACGTCC


title: E_plus:TGGCGTCAATT

description: A2lox.Empty with doxycycline

value: TGGCGTCAATT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell38]

value: GCTCATGAACTGCATA

value: eVSM +/- dox for 24h


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell36]

value: AAGAGGCAGTAAGGAG

value: C


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell35]

value: CGAGGCTGGTAAGGAG


title: E_plus:TGGATAGCGTC

description: A2lox.Empty with doxycycline

value: TGGATAGCGTC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell43]

value: TCCTGAGCACTGCATA

value: D


title: E_plus:TGGCTATGCCG

description: A2lox.Empty with doxycycline

value: TGGCTATGCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell37]

value: GTAGAGGAACTGCATA


title: E_plus:TGGCTCGTTGG

description: A2lox.Empty with doxycycline

value: TGGCTCGTTGG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell32]

value: GGACTCCTGTAAGGAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell33]

value: TAGGCATGGTAAGGAG


title: E_plus:TGGATAGAGAA

description: A2lox.Empty with doxycycline

value: TGGATAGAGAA


title: E_plus:TGGCTTGCAGA

description: A2lox.Empty with doxycycline

value: TGGCTTGCAGA


title: ph505 mutant cells 1

description:
tumor.1
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt

value: FRT19A,ph505 / tubGal80,FRT19A; eyFlp, act>>gal4, UAS-GFP/+

value: ph505 eye-antennal tissue

value: GFP+ (ph505 tumor cells)


title: E_plus:TGGCTTGGTAG

description: A2lox.Empty with doxycycline

value: TGGCTTGGTAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell31]

value: TCCTGAGCGTAAGGAG

value: eVSM +/- dox for 24h


title: E_plus:TGGCGGAAGCT

description: A2lox.Empty with doxycycline

value: TGGCGGAAGCT


title: E_plus:TGGCGGCCTCC

description: A2lox.Empty with doxycycline

value: TGGCGGCCTCC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell30]

value: AGGCAGAAGTAAGGAG

value: C


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell3]

value: ATCTCAGGCTCTCTAT

value: A


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell28]

value: TAAGGCGAGTAAGGAG


title: control cells 1

description:
control.1
This GEO Sample represents 2 technical replicates.
Processed data file: Counttable_collapsed.txt

value: GFP- (control cells)


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell29]

value: CGTACTAGGTAAGGAG


title: E_plus:TGGCGTTCCAG

description: A2lox.Empty with doxycycline

value: TGGCGTTCCAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell45]

value: TAGGCATGACTGCATA

value: D


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell26]

value: GCTCATGAGTAAGGAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell23]

value: CGAGGCTGTATCCTCT

value: B


title: E_plus:TGGAGGCGGCT

description: A2lox.Empty with doxycycline

value: TGGAGGCGGCT


title: E_plus:TGGACTTACGC

description: A2lox.Empty with doxycycline

value: TGGACTTACGC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell34]

value: CTCTCTACGTAAGGAG

value: eVSM +/- dox for 24h


title: E_plus:TGGCTCAACCA

description: A2lox.Empty with doxycycline

value: TGGCTCAACCA


title: E_plus:TGGAGACTACC

description: A2lox.Empty with doxycycline

value: TGGAGACTACC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell24]

value: AAGAGGCATATCCTCT


title: E_plus:TGGCGTCAGCA

description: A2lox.Empty with doxycycline

value: TGGCGTCAGCA


title: E_plus:TTGGTAGCTGA

description: A2lox.Empty with doxycycline

value: TTGGTAGCTGA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell25]

value: GTAGAGGAGTAAGGAG

value: C


title: E_plus:TTGGTCTGACG

description: A2lox.Empty with doxycycline

value: TTGGTCTGACG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell21]

value: TAGGCATGTATCCTCT


title: E_plus:TTGGTAGGACC

description: A2lox.Empty with doxycycline

value: TTGGTAGGACC


title: E_plus:TGGAGATTAAG

description: A2lox.Empty with doxycycline

value: TGGAGATTAAG


title: E_plus:TGGAGACGATG

description: A2lox.Empty with doxycycline

value: TGGAGACGATG


title: E_plus:TTGGTTGCGTA

description: A2lox.Empty with doxycycline

value: TTGGTTGCGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell18]

value: AGGCAGAATATCCTCT

value: B


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell19]

value: TCCTGAGCTATCCTCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell16]

value: TAAGGCGATATCCTCT

value: eVSM +/- dox for 24h


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell22]

value: CTCTCTACTATCCTCT


title: E_plus:TCTAATGGCGG

description: A2lox.Empty with doxycycline

value: TCTAATGGCGG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell20]

value: GGACTCCTTATCCTCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell2]

value: GCTCATGACTCTCTAT

value: A


title: E_plus:TTGGTCAAGCT

description: A2lox.Empty with doxycycline

value: TTGGTCAAGCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell14]

value: GCTCATGATATCCTCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell13]

value: GTAGAGGATATCCTCT


title: E_plus:CTATTACGCGA

description: A2lox.Empty with doxycycline

value: CTATTACGCGA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell10]

value: CTCTCTACCTCTCTAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell17]

value: CGTACTAGTATCCTCT


title: E_plus:TCTATGAATTG

description: A2lox.Empty with doxycycline

value: TCTATGAATTG


title: E_plus:CTGAGTTAACC

description: A2lox.Empty with doxycycline

value: CTGAGTTAACC


title: E_plus:CTCCAGGCAAG

description: A2lox.Empty with doxycycline

value: CTCCAGGCAAG


title: E_plus:TGGAGGTCAAT

description: A2lox.Empty with doxycycline

value: TGGAGGTCAAT


title: E_plus:CTCCAACGCCG

description: A2lox.Empty with doxycycline

value: CTCCAACGCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell11]

value: CGAGGCTGCTCTCTAT

value: eVSM +/- dox for 24h


title: E_plus:CTCCATAAGGT

description: A2lox.Empty with doxycycline

value: CTCCATAAGGT


title: E_plus:CTGCCTTCCGA

description: A2lox.Empty with doxycycline

value: CTGCCTTCCGA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell15]

value: ATCTCAGGTATCCTCT

value: B


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell1]

value: GTAGAGGACTCTCTAT

value: A


title: E_plus:CTGAGATTCTC

description: A2lox.Empty with doxycycline

value: CTGAGATTCTC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell94]

value: CTCTCTACTCTCTCCG

value: H


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell95]

value: CGAGGCTGTCTCTCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell96]

value: AAGAGGCATCTCTCCG


title: E_plus:CTGATCCAACG

description: A2lox.Empty with doxycycline

value: CTGATCCAACG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell93]

value: TAGGCATGTCTCTCCG


title: E_plus:CTAGCCATGCC

description: A2lox.Empty with doxycycline

value: CTAGCCATGCC


title: E_plus:CTACCAACTCG

description: A2lox.Empty with doxycycline

value: CTACCAACTCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell92]

value: GGACTCCTTCTCTCCG


title: E_plus:CTATATCATGA

description: A2lox.Empty with doxycycline

value: CTATATCATGA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell91]

value: TCCTGAGCTCTCTCCG

value: eVSM +/- dox for 24h


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell90]

value: AGGCAGAATCTCTCCG


title: E_plus:CTCTGCTGCAG

description: A2lox.Empty with doxycycline

value: CTCTGCTGCAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell89]

value: CGTACTAGTCTCTCCG


title: E_plus:CTCAATCGATA

description: A2lox.Empty with doxycycline

value: CTCAATCGATA


title: E_plus:CTATCGTCCAG

description: A2lox.Empty with doxycycline

value: CTATCGTCCAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell87]

value: ATCTCAGGTCTCTCCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell88]

value: TAAGGCGATCTCTCCG

value: H


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell85]

value: GTAGAGGATCTCTCCG


title: E_plus:CTCGGCTCCGC

description: A2lox.Empty with doxycycline

value: CTCGGCTCCGC


title: E_plus:CTCCTTGCTTA

description: A2lox.Empty with doxycycline

value: CTCCTTGCTTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell9]

value: TAGGCATGCTCTCTAT

value: A


title: E_plus:CTAACGGTCAA

description: A2lox.Empty with doxycycline

value: CTAACGGTCAA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell84]

value: AAGAGGCACGTCTAAT

value: G


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell86]

value: GCTCATGATCTCTCCG

value: eVSM +/- dox for 24h


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell83]

value: CGAGGCTGCGTCTAAT


title: E_plus:CTAGCTGCATT

description: A2lox.Empty with doxycycline

value: CTAGCTGCATT


title: E_plus:CTCTCTGGTTA

description: A2lox.Empty with doxycycline

value: CTCTCTGGTTA


title: E_plus:CTCGCATACGG

description: A2lox.Empty with doxycycline

value: CTCGCATACGG


title: E_plus:CTACGATATTC

description: A2lox.Empty with doxycycline

value: CTACGATATTC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell82]

value: CTCTCTACCGTCTAAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell81]

value: TAGGCATGCGTCTAAT


title: E_plus:CTAGCTCAAGA

description: A2lox.Empty with doxycycline

value: CTAGCTCAAGA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell80]

value: GGACTCCTCGTCTAAT


title: E_plus:CTACGTCTGCA

description: A2lox.Empty with doxycycline

value: CTACGTCTGCA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell8]

value: GGACTCCTCTCTCTAT


title: E_plus:CTCTCGCTGCC

description: A2lox.Empty with doxycycline

value: CTCTCGCTGCC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell79]

value: TCCTGAGCCGTCTAAT


title: E_plus:CGTTGACCAGC

description: A2lox.Empty with doxycycline

value: CGTTGACCAGC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell78]

value: AGGCAGAACGTCTAAT

value: G


title: E_plus:CTCTAACGGAC

description: A2lox.Empty with doxycycline

value: CTCTAACGGAC


title: E_plus:CTCGGTTCGCT

description: A2lox.Empty with doxycycline

value: CTCGGTTCGCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell75]

value: ATCTCAGGCGTCTAAT

value: eVSM +/- dox for 24h


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell77]

value: CGTACTAGCGTCTAAT


title: E_plus:CGTTGATAATC

description: A2lox.Empty with doxycycline

value: CGTTGATAATC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell76]

value: TAAGGCGACGTCTAAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell27]

value: ATCTCAGGGTAAGGAG

value: C


title: E_plus:CTCGCAGTAAT

description: A2lox.Empty with doxycycline

value: CTCGCAGTAAT


title: E_plus:CGCCATAGGAT

description: A2lox.Empty with doxycycline

value: CGCCATAGGAT


title: E_plus:CGCCTCAATCC

description: A2lox.Empty with doxycycline

value: CGCCTCAATCC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell71]

value: CGAGGCTGCTAAGCCT

value: F


title: E_plus:CGTTGAATCGA

description: A2lox.Empty with doxycycline

value: CGTTGAATCGA


title: E_plus:CTCCTGGCTCG

description: A2lox.Empty with doxycycline

value: CTCCTGGCTCG


title: E_plus:CGTTGCATTGC

description: A2lox.Empty with doxycycline

value: CGTTGCATTGC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell74]

value: GCTCATGACGTCTAAT

value: G


title: E_plus:CGCCAACTCGG

description: A2lox.Empty with doxycycline

value: CGCCAACTCGG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell7]

value: TCCTGAGCCTCTCTAT

value: eVSM +/- dox for 24h

value: A


title: E_plus:CGCCATCAGAG

description: A2lox.Empty with doxycycline

value: CGCCATCAGAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell70]

value: CTCTCTACCTAAGCCT


title: E_plus:CGCCTATAATC

description: A2lox.Empty with doxycycline

value: CGCCTATAATC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell68]

value: GGACTCCTCTAAGCCT


title: E_plus:CCGTAACCAGA

description: A2lox.Empty with doxycycline

value: CCGTAACCAGA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell67]

value: TCCTGAGCCTAAGCCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell66]

value: AGGCAGAACTAAGCCT


title: E_plus:CGCCAAGTAAG

description: A2lox.Empty with doxycycline

value: CGCCAAGTAAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell69]

value: TAGGCATGCTAAGCCT

value: F


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell65]

value: CGTACTAGCTAAGCCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell72]

value: AAGAGGCACTAAGCCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell73]

value: GTAGAGGACGTCTAAT

value: G


title: E_plus:CGCCAAGCTGC

description: A2lox.Empty with doxycycline

value: CGCCAAGCTGC


title: E_plus:CGCCATCAACT

description: A2lox.Empty with doxycycline

value: CGCCATCAACT


title: E_plus:CGCGAGAGATA

description: A2lox.Empty with doxycycline

value: CGCGAGAGATA


title: E_plus:CGCCTAAGACG

description: A2lox.Empty with doxycycline

value: CGCCTAAGACG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell62]

value: GCTCATGACTAAGCCT

value: eVSM +/- dox for 24h


title: E_plus:CCGCCTGCAGT

description: A2lox.Empty with doxycycline

value: CCGCCTGCAGT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell61]

value: GTAGAGGACTAAGCCT


title: E_plus:CCGCCTCAGTC

description: A2lox.Empty with doxycycline

value: CCGCCTCAGTC


title: E_plus:CGCAACTGATC

description: A2lox.Empty with doxycycline

value: CGCAACTGATC


title: E_plus:CGCAGTAGTTG

description: A2lox.Empty with doxycycline

value: CGCAGTAGTTG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell6]

value: AGGCAGAACTCTCTAT

value: A


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell59]

value: CGAGGCTGAAGGAGTA

value: E


title: E_plus:CCGCTTGCGCT

description: A2lox.Empty with doxycycline

value: CCGCTTGCGCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell58]

value: CTCTCTACAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell57]

value: TAGGCATGAAGGAGTA


title: E_plus:CCGGTCTACGA

description: A2lox.Empty with doxycycline

value: CCGGTCTACGA


title: E_plus:CCGCTTCAGCA

description: A2lox.Empty with doxycycline

value: CCGCTTCAGCA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell54]

value: AGGCAGAAAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell55]

value: TCCTGAGCAAGGAGTA


title: E_plus:CGAGTTGAGAC

description: A2lox.Empty with doxycycline

value: CGAGTTGAGAC


title: E_plus:CCGCCTGGAAG

description: A2lox.Empty with doxycycline

value: CCGCCTGGAAG


title: E_plus:CGAGTAACTTC

description: A2lox.Empty with doxycycline

value: CGAGTAACTTC


title: E_plus:CCGGCTCGACC

description: A2lox.Empty with doxycycline

value: CCGGCTCGACC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell53]

value: CGTACTAGAAGGAGTA

value: eVSM +/- dox for 24h


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell63]

value: ATCTCAGGCTAAGCCT

value: F


title: E_plus:CCGCCTTGCAT

description: A2lox.Empty with doxycycline

value: CCGCCTTGCAT


title: E_plus:CCGCTAGACTT

description: A2lox.Empty with doxycycline

value: CCGCTAGACTT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell50]

value: GCTCATGAAAGGAGTA

value: E


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell52]

value: TAAGGCGAAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell60]

value: AAGAGGCAAAGGAGTA


title: E_plus:CGATTGGTAAC

description: A2lox.Empty with doxycycline

value: CGATTGGTAAC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell51]

value: ATCTCAGGAAGGAGTA


title: E_plus:CCGCAGGCCGG

description: A2lox.Empty with doxycycline

value: CCGCAGGCCGG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell49]

value: GTAGAGGAAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate2_Cell12]

value: AAGAGGCACTCTCTAT

value: A


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell5]

value: CGTACTAGCTCTCTAT


title: E_plus:CCGCCAAGAAT

description: A2lox.Empty with doxycycline

value: CCGCCAAGAAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell48]

value: AAGAGGCAACTGCATA

value: eVSM +/- dox for 24h

value: D


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell56]

value: GGACTCCTAAGGAGTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell47]

value: CGAGGCTGACTGCATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell46]

value: CTCTCTACACTGCATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell45]

value: TAGGCATGACTGCATA


title: E_plus:CCGCATCGAGT

description: A2lox.Empty with doxycycline

value: CCGCATCGAGT


title: E_plus:CGAATCTAATT

description: A2lox.Empty with doxycycline

value: CGAATCTAATT


title: E_plus:CGAGGTTGAGT

description: A2lox.Empty with doxycycline

value: CGAGGTTGAGT


title: E_plus:CGACTATAGTT

description: A2lox.Empty with doxycycline

value: CGACTATAGTT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell44]

value: GGACTCCTACTGCATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell40]

value: TAAGGCGAACTGCATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell43]

value: TCCTGAGCACTGCATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell39]

value: ATCTCAGGACTGCATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell41]

value: CGTACTAGACTGCATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell37]

value: GTAGAGGAACTGCATA


title: E_plus:CCGACTAAGCA

description: A2lox.Empty with doxycycline

value: CCGACTAAGCA


title: E_minus:TTGATGCAATC

description: A2lox.Empty without doxycycline

value: TTGATGCAATC


title: E_plus:CGACTCAACTG

description: A2lox.Empty with doxycycline

value: CGACTCAACTG


title: E_plus:CGACCATCGAA

description: A2lox.Empty with doxycycline

value: CGACCATCGAA


title: E_plus:CCGAGCGAGCG

description: A2lox.Empty with doxycycline

value: CCGAGCGAGCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell38]

value: GCTCATGAACTGCATA

value: eVSM +/- dox for 24h

value: D


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell36]

value: AAGAGGCAGTAAGGAG

value: C


title: E_minus:TTGCCGCTGGA

description: A2lox.Empty without doxycycline

value: TTGCCGCTGGA


title: E_plus:CGAGGTTATAG

description: A2lox.Empty with doxycycline

value: CGAGGTTATAG


title: E_plus:CGACCGATCGT

description: A2lox.Empty with doxycycline

value: CGACCGATCGT


title: E_plus:CGACCTTGGTA

description: A2lox.Empty with doxycycline

value: CGACCTTGGTA


title: E_minus:TTGCCTGGCTC

description: A2lox.Empty without doxycycline

value: TTGCCTGGCTC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell42]

value: AGGCAGAAACTGCATA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell34]

value: CTCTCTACGTAAGGAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell33]

value: TAGGCATGGTAAGGAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell35]

value: CGAGGCTGGTAAGGAG


title: E_plus:CGAAGTTGATA

description: A2lox.Empty with doxycycline

value: CGAAGTTGATA


title: E_minus:TTGCGCGGTTC

description: A2lox.Empty without doxycycline

value: TTGCGCGGTTC


title: E_minus:TTGCCGCATAT

description: A2lox.Empty without doxycycline

value: TTGCCGCATAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell32]

value: GGACTCCTGTAAGGAG


title: E_minus:TTGCGCGCTCA

description: A2lox.Empty without doxycycline

value: TTGCGCGCTCA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell4]

value: TAAGGCGACTCTCTAT

value: eVSM +/- dox for 24h

value: A


title: E_minus:TTGCTAATGAA

description: A2lox.Empty without doxycycline

value: TTGCTAATGAA


title: E_minus:TTGCCGGAACC

description: A2lox.Empty without doxycycline

value: TTGCCGGAACC


title: E_minus:TTCTTAGCGAG

description: A2lox.Empty without doxycycline

value: TTCTTAGCGAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell3]

value: ATCTCAGGCTCTCTAT


title: E_minus:TTGAACGCCTG

description: A2lox.Empty without doxycycline

value: TTGAACGCCTG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell29]

value: CGTACTAGGTAAGGAG

value: C


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell28]

value: TAAGGCGAGTAAGGAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell27]

value: ATCTCAGGGTAAGGAG


title: E_minus:TTCTTATCCGC

description: A2lox.Empty without doxycycline

value: TTCTTATCCGC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell26]

value: GCTCATGAGTAAGGAG


title: E_minus:TTGACGACCTG

description: A2lox.Empty without doxycycline

value: TTGACGACCTG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell24]

value: AAGAGGCATATCCTCT

value: B


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell25]

value: GTAGAGGAGTAAGGAG


title: E_minus:TTGAGAACCGA

description: A2lox.Empty without doxycycline

value: TTGAGAACCGA


title: E_minus:TTGATATACTA

description: A2lox.Empty without doxycycline

value: TTGATATACTA


title: E_minus:TTGAAGTAACC

description: A2lox.Empty without doxycycline

value: TTGAAGTAACC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell31]

value: TCCTGAGCGTAAGGAG

value: eVSM +/- dox for 24h


title: E_minus:TTGAGCGATAG

description: A2lox.Empty without doxycycline

value: TTGAGCGATAG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell23]

value: CGAGGCTGTATCCTCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell22]

value: CTCTCTACTATCCTCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell21]

value: TAGGCATGTATCCTCT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell30]

value: AGGCAGAAGTAAGGAG

value: C


title: E_minus:TTCGCCTCCGA

description: A2lox.Empty without doxycycline

value: TTCGCCTCCGA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell2]

value: GCTCATGACTCTCTAT

value: A


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell19]

value: TCCTGAGCTATCCTCT


title: E_minus:TTCGTATTGCC

description: A2lox.Empty without doxycycline

value: TTCGTATTGCC


title: E_minus:TTATAACTTAC

description: A2lox.Empty without doxycycline

value: TTATAACTTAC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell20]

value: GGACTCCTTATCCTCT

value: B


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell18]

value: AGGCAGAATATCCTCT


title: E_minus:TTATACGTATC

description: A2lox.Empty without doxycycline

value: TTATACGTATC


title: E_minus:TTATAAGCTGA

description: A2lox.Empty without doxycycline

value: TTATAAGCTGA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell17]

value: CGTACTAGTATCCTCT

value: eVSM +/- dox for 24h


title: E_minus:TTAGAAGCGAA

description: A2lox.Empty without doxycycline

value: TTAGAAGCGAA


title: E_minus:TTACTGCTTAC

description: A2lox.Empty without doxycycline

value: TTACTGCTTAC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell15]

value: ATCTCAGGTATCCTCT


title: E_minus:TTCAGGAGGCA

description: A2lox.Empty without doxycycline

value: TTCAGGAGGCA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell14]

value: GCTCATGATATCCTCT


title: E_minus:TTAGATGATAC

description: A2lox.Empty without doxycycline

value: TTAGATGATAC


title: E_minus:TTCGAGATCAT

description: A2lox.Empty without doxycycline

value: TTCGAGATCAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell12]

value: AAGAGGCACTCTCTAT

value: A


title: E_minus:TTAGATCCGCC

description: A2lox.Empty without doxycycline

value: TTAGATCCGCC


title: E_minus:TTATGCGACTC

description: A2lox.Empty without doxycycline

value: TTATGCGACTC


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell1]

value: GTAGAGGACTCTCTAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell10]

value: CTCTCTACCTCTCTAT


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell11]

value: CGAGGCTGCTCTCTAT


title: E_minus:TTACGTTCCGT

description: A2lox.Empty without doxycycline

value: TTACGTTCCGT


title: E_minus:TTATCTCCTCA

description: A2lox.Empty without doxycycline

value: TTATCTCCTCA


title: E_minus:TTATGGTAGCG

description: A2lox.Empty without doxycycline

value: TTATGGTAGCG


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell64]

value: TAAGGCGACTAAGCCT

value: eVSM +/- dox for 24h

value: F


title: E_minus:TTATGCTCAAC

description: A2lox.Empty without doxycycline

value: TTATGCTCAAC


title: E_minus:TTCAATGACGG

description: A2lox.Empty without doxycycline

value: TTCAATGACGG


title: E_minus:TTAATCTCGAG

description: A2lox.Empty without doxycycline

value: TTAATCTCGAG


title: E_minus:TTATGACTATG

description: A2lox.Empty without doxycycline

value: TTATGACTATG


title: E_minus:TGGTTGGTACT

description: A2lox.Empty without doxycycline

value: TGGTTGGTACT


title: E_minus:TGATTGCTACG

description: A2lox.Empty without doxycycline

value: TGATTGCTACG


title: E_minus:TGATTAGTCTA

description: A2lox.Empty without doxycycline

value: TGATTAGTCTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell16]

value: TAAGGCGATATCCTCT

value: B


title: E_minus:TGATTGGACCG

description: A2lox.Empty without doxycycline

value: TGATTGGACCG


title: E_minus:GGAACCGCCTA

description: A2lox.Empty without doxycycline

value: GGAACCGCCTA


title: Single-cell RNAseq analysis of the i8TF cell lines with/without exposure to dox [Plate1_Cell13]

value: GTAGAGGATATCCTCT


title: E_minus:GGAGGTTACTA

description: A2lox.Empty without doxycycline

value: GGAGGTTACTA


title: E_minus:GCTGAGTACCG

description: A2lox.Empty without doxycycline

value: GCTGAGTACCG


title: E_minus:GGAGTTCGTCT

description: A2lox.Empty without doxycycline

value: GGAGTTCGTCT


title: E_minus:TGATTGCCTTC

description: A2lox.Empty without doxycycline

value: TGATTGCCTTC


title: E_minus:TTAGGAGTATA

description: A2lox.Empty without doxycycline

value: TTAGGAGTATA


title: E_minus:GGATGCCAGGC

description: A2lox.Empty without doxycycline

value: GGATGCCAGGC


title: E_minus:GCTCTTCCTCA

description: A2lox.Empty without doxycycline

value: GCTCTTCCTCA


title: E_minus:GCTCGGCTTGA

description: A2lox.Empty without doxycycline

value: GCTCGGCTTGA


title: E_minus:GGAGTCGTTAA

description: A2lox.Empty without doxycycline

value: GGAGTCGTTAA


title: E_minus:GGAGTATATAC

description: A2lox.Empty without doxycycline

value: GGAGTATATAC


title: E_minus:GAGTTGCTGAC

description: A2lox.Empty without doxycycline

value: GAGTTGCTGAC


title: E_minus:GAACTTAAGGC

description: A2lox.Empty without doxycycline

value: GAACTTAAGGC


title: E_minus:GAGTCGCGGCC

description: A2lox.Empty without doxycycline

value: GAGTCGCGGCC


title: E_minus:GATTCATGCCG

description: A2lox.Empty without doxycycline

value: GATTCATGCCG


title: E_minus:GACTCAAGCCT

description: A2lox.Empty without doxycycline

value: GACTCAAGCCT


title: E_minus:TGCTTGATAGC

description: A2lox.Empty without doxycycline

value: TGCTTGATAGC


title: E_minus:GAAGAATCCGG

description: A2lox.Empty without doxycycline

value: GAAGAATCCGG


title: E_minus:GCTCTCATAAG

description: A2lox.Empty without doxycycline

value: GCTCTCATAAG


title: E_minus:TGGAAGGTTGG

description: A2lox.Empty without doxycycline

value: TGGAAGGTTGG


title: E_minus:GAGGTCAGCGA

description: A2lox.Empty without doxycycline

value: GAGGTCAGCGA


title: E_minus:GAGAAGCGTAG

description: A2lox.Empty without doxycycline

value: GAGAAGCGTAG


title: E_minus:GAACTAAGCTC

description: A2lox.Empty without doxycycline

value: GAACTAAGCTC


title: E_minus:GACTGACGCTG

description: A2lox.Empty without doxycycline

value: GACTGACGCTG


title: E_minus:GAACGATGGCC

description: A2lox.Empty without doxycycline

value: GAACGATGGCC


title: E_minus:GAACGGCGTAA

description: A2lox.Empty without doxycycline

value: GAACGGCGTAA


title: E_minus:GAACGCTAAGG

description: A2lox.Empty without doxycycline

value: GAACGCTAAGG


title: E_minus:GAACGTAGCGC

description: A2lox.Empty without doxycycline

value: GAACGTAGCGC


title: E_minus:GAAGCATGACC

description: A2lox.Empty without doxycycline

value: GAAGCATGACC


title: E_minus:GGACGCGGAAG

description: A2lox.Empty without doxycycline

value: GGACGCGGAAG


title: E_minus:GAACTACGTAT

description: A2lox.Empty without doxycycline

value: GAACTACGTAT


title: E_minus:CTGGAAGCTCT

description: A2lox.Empty without doxycycline

value: CTGGAAGCTCT


title: E_minus:CTGCTGGTTCT

description: A2lox.Empty without doxycycline

value: CTGCTGGTTCT


title: E_minus:CTGGATTGACC

description: A2lox.Empty without doxycycline

value: CTGGATTGACC


title: E_minus:CTGCTTCTTCA

description: A2lox.Empty without doxycycline

value: CTGCTTCTTCA


title: E_minus:GAACGCCGGAT

description: A2lox.Empty without doxycycline

value: GAACGCCGGAT


title: E_minus:GAACGGACTCG

description: A2lox.Empty without doxycycline

value: GAACGGACTCG


title: E_minus:GATTAGATTCT

description: A2lox.Empty without doxycycline

value: GATTAGATTCT


title: E_minus:GAACGGCAATC

description: A2lox.Empty without doxycycline

value: GAACGGCAATC


title: E_minus:GAAGCCTTCCG

description: A2lox.Empty without doxycycline

value: GAAGCCTTCCG


title: E_minus:CTGCGTACGGT

description: A2lox.Empty without doxycycline

value: CTGCGTACGGT


title: E_minus:GAACCGAGCCG

description: A2lox.Empty without doxycycline

value: GAACCGAGCCG


title: E_minus:CTCCTCCGTAG

description: A2lox.Empty without doxycycline

value: CTCCTCCGTAG


title: E_minus:CTCCGATCGGT

description: A2lox.Empty without doxycycline

value: CTCCGATCGGT


title: E_minus:CTCCGAGGATC

description: A2lox.Empty without doxycycline

value: CTCCGAGGATC


title: E_minus:CTTCCATTGGT

description: A2lox.Empty without doxycycline

value: CTTCCATTGGT


title: E_minus:GAACCGTAGTT

description: A2lox.Empty without doxycycline

value: GAACCGTAGTT


title: E_minus:GAACCATACTG

description: A2lox.Empty without doxycycline

value: GAACCATACTG


title: E_minus:GAACCGATGGA

description: A2lox.Empty without doxycycline

value: GAACCGATGGA


title: E_minus:CTGGTTAACTG

description: A2lox.Empty without doxycycline

value: CTGGTTAACTG


title: E_minus:CTTAGTCGAGG

description: A2lox.Empty without doxycycline

value: CTTAGTCGAGG


title: E_minus:CTTGGATCGAA

description: A2lox.Empty without doxycycline

value: CTTGGATCGAA


title: E_minus:CTTCCAGTTGA

description: A2lox.Empty without doxycycline

value: CTTCCAGTTGA


title: E_minus:CGTTCGGCCGC

description: A2lox.Empty without doxycycline

value: CGTTCGGCCGC


title: E_minus:CTGGTAATCAG

description: A2lox.Empty without doxycycline

value: CTGGTAATCAG


title: E_minus:CGGTCTTCTTC

description: A2lox.Empty without doxycycline

value: CGGTCTTCTTC


title: E_minus:CTGGTAGGCGG

description: A2lox.Empty without doxycycline

value: CTGGTAGGCGG


title: E_minus:CGTTATGAACT

description: A2lox.Empty without doxycycline

value: CGTTATGAACT


title: E_minus:CTGGTTCTGAA

description: A2lox.Empty without doxycycline

value: CTGGTTCTGAA


title: E_minus:CGGTTAATGAG

description: A2lox.Empty without doxycycline

value: CGGTTAATGAG


title: E_minus:CGTTAGATCGG

description: A2lox.Empty without doxycycline

value: CGTTAGATCGG


title: E_minus:CGTTATCCTTA

description: A2lox.Empty without doxycycline

value: CGTTATCCTTA


title: E_minus:CTCCGCGAGAC

description: A2lox.Empty without doxycycline

value: CTCCGCGAGAC


title: E_minus:CGGCTTGGAGG

description: A2lox.Empty without doxycycline

value: CGGCTTGGAGG


title: E_minus:CGTCTATACCG

description: A2lox.Empty without doxycycline

value: CGTCTATACCG


title: E_minus:CGGTATTAACC

description: A2lox.Empty without doxycycline

value: CGGTATTAACC


title: E_minus:CTTACGGTACG

description: A2lox.Empty without doxycycline

value: CTTACGGTACG


title: E_minus:CGTCCTCAGCT

description: A2lox.Empty without doxycycline

value: CGTCCTCAGCT


title: E_minus:CGGTATGCGCA

description: A2lox.Empty without doxycycline

value: CGGTATGCGCA


title: E_minus:CGTCGTAACTG

description: A2lox.Empty without doxycycline

value: CGTCGTAACTG


title: E_minus:CGTCTTCCATA

description: A2lox.Empty without doxycycline

value: CGTCTTCCATA


title: E_minus:CGTCGATCGTT

description: A2lox.Empty without doxycycline

value: CGTCGATCGTT


title: E_minus:CGGCGCGGCGA

description: A2lox.Empty without doxycycline

value: CGGCGCGGCGA


title: E_minus:CGTAGCAGTTA

description: A2lox.Empty without doxycycline

value: CGTAGCAGTTA


title: E_minus:GAACCGCAGCG

description: A2lox.Empty without doxycycline

value: GAACCGCAGCG


title: E_minus:CTGGTCGAACC

description: A2lox.Empty without doxycycline

value: CTGGTCGAACC


title: E_minus:AACTCGTTCCT

description: A2lox.Empty without doxycycline

value: AACTCGTTCCT


title: E_minus:CGGATTGCTGA

description: A2lox.Empty without doxycycline

value: CGGATTGCTGA


title: E_minus:CGCTTCTGCTC

description: A2lox.Empty without doxycycline

value: CGCTTCTGCTC


title: E_minus:AACTACGGTCC

description: A2lox.Empty without doxycycline

value: AACTACGGTCC


title: E_minus:AACTCCTGGCC

description: A2lox.Empty without doxycycline

value: AACTCCTGGCC


title: E_minus:AACTAGAGCCT

description: A2lox.Empty without doxycycline

value: AACTAGAGCCT


title: E_minus:AACTCGCGCCG

description: A2lox.Empty without doxycycline

value: AACTCGCGCCG


title: E_minus:AACTAATCAGA

description: A2lox.Empty without doxycycline

value: AACTAATCAGA


title: E_minus:AACGTAATCGC

description: A2lox.Empty without doxycycline

value: AACGTAATCGC


title: E_minus:AACTCGAGATC

description: A2lox.Empty without doxycycline

value: AACTCGAGATC


title: E_minus:AACTAACCTTG

description: A2lox.Empty without doxycycline

value: AACTAACCTTG


title: E_minus:AACTCAATGAG

description: A2lox.Empty without doxycycline

value: AACTCAATGAG


title: E_minus:AACGTTACTCG

description: A2lox.Empty without doxycycline

value: AACGTTACTCG


title: E_minus:AACCTGGTATT

description: A2lox.Empty without doxycycline

value: AACCTGGTATT


title: E_minus:AACGTCGCTAG

description: A2lox.Empty without doxycycline

value: AACGTCGCTAG


title: E_minus:AACTACCAGCG

description: A2lox.Empty without doxycycline

value: AACTACCAGCG


title: E_minus:AACGTACGCCA

description: A2lox.Empty without doxycycline

value: AACGTACGCCA


title: E_minus:AACGTATAGGT

description: A2lox.Empty without doxycycline

value: AACGTATAGGT


title: E_minus:AACGTACCTGA

description: A2lox.Empty without doxycycline

value: AACGTACCTGA