title: Pcan43Q

first: Felix

last: Krueger

address: Granta Park

department: Bioinformatics

institute: Altos Labs

data_processing:
Libraries were sequenced on either the Illumina Genome Analyzer IIx or HiSeq platform using the default RTA analysis software.
RNA-Seq reads were aligned using Tophat (v2.0.9) with Bowtie 2 (parameters -g 1).
Bisulfite sequencing reads were trimmed using Trim Galore (v0.3.5) with default parameters (http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/). Reads were aligned and methylation calls extracted using Bismark v0.12.2 (parameters: --bowtie2 --score_min L,0,-0.4).
RNA-Seq data were quantitated using the RNA-Seq pipeline in SeqMonk (http://www.bioinformatics.babraham.ac.uk/projects/seqmonk/), counting the log2 transformed number of reads per transcript corrected per million reads (log2RPKM).
Genome_build: Polistes canadensis JPHQ00000000
Genome_build: Dinoponera quadriceps JPHR00000000
Supplementary_files_format_and_content: The genome-wide CX methylation report is tab-delimited, uses 1-based genomic coordinates for every cytosine position in the genome (top and bottom strand) and is in the following format: For Polistes canadensis files: <chromosome>  <position>  <strand>  <count methylated>  <count non-methylated>  <C-context>  <trinucleotide context>; For Dinoponera quadriceps files: <contig>  <position>  <strand>  <count methylated>  <count non-methylated>  <C-context>  <trinucleotide context>
Supplementary_files_format_and_content: Quantitated RNA-Seq data files are tab delimited and contain the following columns: (1) mRNA name; (2) Chromosome; (3) Start; (4) End; (5) Strand; (6) Description; (7-end) log2RPKM Expression Values

organism: Polistes canadensis

source_name: adult brain

extract_protocol:
Genomic DNA and total RNA were extracted from single brains using the Qiagen All Prep DNA/RNA Mini kit according to the manufacturers’ instructions.
For RNA-seq libraries, 50 to 200 ng total RNA was enriched for mRNA using Dynabeads Oligo(dT)25 from Invitrogen in two subsequent steps of purification with fresh beads. Fragmentation was done by incubation of mRNAs 5min at 94°C in first strand buffer (Invitrogen) and directly followed with cDNA synthesis using SuperScript III kit (Invitrogen). dUTPs were incorporated for second strand synthesis for libraries orientation. cDNA was end repaired, A-tailed and ligated with methylation Adaptor Oligo Kit (Ilumina) using the NEB Next kit according to the manufacturers’ instructions. dUTP excision was done prior to amplification using USER mix (NEB). Libraries were amplified with 16 cycles using 2x Phusion HF buffer (NEB). Size selection and cleaning between steps were performed with the AMPure XP system (Agencourt) to select DNA fragments between 250 and 500 bp. Paired-end libraries were sequenced on either Illumina GAIIx or HiSeq machines.
For BS-seq libraries, synthetic genomes of P. canadensis and D. quadriceps were prepared using REPLI-g Ultra fast Mini kit from QIAGEN and 1 µL of amplification were treated in parallel with the other libraries. Libraries were prepared using 200 to 500 ng genomic DNA. After sonication (Covaris), DNA was end-repaired, A-tailed and ligated with methylation Adaptor Oligo Kit (Ilumina) using the NEB Next kit according to the manufacturers’ instructions. The adaptor-ligated DNA was treated with sodium-bisulfite using the Imprint DNA Modification Kit from Sigma-Aldrich according to the manufacturer’s instructions for the two-step protocol. Bisulfite-treated DNA was amplified using KAPA HiFi Uracil+DNA Polymerase with 15 cycles. Size selection and cleaning between steps were performed with the AMPure XP system (Agencourt) to select DNA fragments between 250 and 500 bp.

value: WT

tag: social status

value: reproductive


title: Pcan26W

status: Public on Sep 30 2015

type: SRA

city: Cambridge

country: United Kingdom

library_source: genomic

molecule: genomic DNA

tag: genotype/variation

value: non-reproductive


title: Pcan76W


title: old_C57BL6_MPP_187

first: Monika

middle: Sylwia

last: Kowalczyk

state: MA

address: 415 Main Street

country: USA

institute: Broad Institute

description:
old_MPP_187
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx

library_source: transcriptomic

data_processing:
Paired-end 25bp reads were mapped to the UCSC mouse transcriptome by Bowtie, allowing up to two mismatches, and expression levels of all UCSC genes were estimated by RSEM with default parameters. TPM values as defined by RSEM were added a value of 1 (to avoid zeros) and then log2-transformed.
We filtered out cells in which less than 2500 UCSC genes were detected above a log2(TPM+1) threshold of 2. We excluded genes whose log2(TPM+1) was lower than 4 in the aggregared data for each of the 6 populations, and those UCSC genes that were not associated with a HUGO gene Symbol, leaving 7823 genes for the final dataset.
Genome_build: mm9
Supplementary_files_format_and_content: GEO_HSC_single_data.xlsx is an Excel sheet that contain the log-transformed expression levels, log2(TMP+1) of 8422 mouse transcripts in 1429 single cells and in six population averages, including young and old LT-HSCs, ST-HSCs and MPPs. The first row contains cell ID (a unique index for each single cell) or "pop" for the population averages. The second row indicates the type of population (age and cell type) that the cell (or population average) belongs to. The first and second columns include gene symbols and UCSC transcript names, respectively. (The processed data file only represents samples that were of sufficient quality to analyze)

molecule: total RNA

organism: Mus musculus

source_name: hematopoietic stem and progenitor cells

growth_protocol: cells were profiled immediately

extract_protocol:
for single cells - direct lysis; for populations we used PrepEase (Affymetrix) according to manufacturers protocol.
cDNA from each sample was prepared using the SMARTer cDNA synthesis (Clontech). RNA libraries were prepared for sequencing using Nextera XT (Illumina).

tag: strain

tag: age

value: 22 months old

tag: cell type

value: multipotent progenitor


title: old_C57BL6_MPP_185

description:
old_MPP_185
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_186

description:
old_MPP_186
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_C57BL6_MPP_population_2

description:
young_MPP_population_biol2_tech1
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx

value: 2-3 months old


title: old_C57BL6_MPP_184

description:
old_MPP_184
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_183

description:
old_MPP_183
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Pcan21Q


title: Pcan Synthetic

value: amplified genome


title: old_C57BL6_MPP_182

description:
old_MPP_182
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_180

description:
old_MPP_180
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_181

description:
old_MPP_181
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Worker-Pcan137

molecule: polyA RNA

value: forager


title: Worker_Pcan72b


title: Worker-Pcan127


title: young_C57BL6_MPP_population_3

description:
young_MPP_population_biol1_tech2
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Worker_Pcan66b


title: Worker_Pcan135


title: Pcan75Q


title: Worker_Pcan76b


title: Pcan42W


title: Queen_Pcan75b

value: queen


title: Queen_Pcan73b


title: old_C57BL6_MPP_179

description:
old_MPP_179
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_176

description:
old_MPP_176
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Queen_Pcan134


title: old_C57BL6_MPP_175

description:
old_MPP_175
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_178

description:
old_MPP_178
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_189

description:
old_MPP_189
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_174

description:
old_MPP_174
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Dqua3CW

organism: Dinoponera quadriceps


title: old_C57BL6_MPP_172

description:
old_MPP_172
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_173

description:
old_MPP_173
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Dqua3AQ


title: Dqua1CW


title: old_C57BL6_MPP_170

description:
old_MPP_170
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Dqua1AQ


title: old_C57BL6_MPP_168

description:
old_MPP_168
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Dqua Synthetic


title: Dqua2AQ


title: Low_35Y44


title: old_C57BL6_MPP_167

description:
old_MPP_167
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Low_36W35


title: old_C57BL6_MPP_166

description:
old_MPP_166
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Queen_Pcan65b


title: Dqua3DW


title: old_C57BL6_MPP_164

description:
old_MPP_164
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_165

description:
old_MPP_165
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Low_2B82


title: Low_12Y51


title: Alpha_35Y87


title: old_C57BL6_MPP_163

description:
old_MPP_163
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_177

description:
old_MPP_177
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_171

description:
old_MPP_171
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_161

description:
old_MPP_161
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Alpha_36W26


title: Alpha_23Y79


title: Alpha_10G48


title: old_C57BL6_MPP_157

description:
old_MPP_157
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_169

description:
old_MPP_169
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_159

description:
old_MPP_159
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_155

description:
old_MPP_155
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Low_23Y59


title: old_C57BL6_MPP_156

description:
old_MPP_156
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_153

description:
old_MPP_153
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_158

description:
old_MPP_158
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Low_10G17


title: old_C57BL6_MPP_154

description:
old_MPP_154
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_151

description:
old_MPP_151
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Alpha_12Y30


title: old_C57BL6_MPP_162

description:
old_MPP_162
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_150

description:
old_MPP_150
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_149

description:
old_MPP_149
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_160

description:
old_MPP_160
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_146

description:
old_MPP_146
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_148

description:
old_MPP_148
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_147

description:
old_MPP_147
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_144

description:
old_MPP_144
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_143

description:
old_MPP_143
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_145

description:
old_MPP_145
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_152

description:
old_MPP_152
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_142

description:
old_MPP_142
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Alpha_10B70


title: TrAP

city: College Station

first: Claudia

middle: Marcela

last: Castillo-González

state: Texas

department: Biochemistry & Biophysics

institute: Texas A&M University

description: Bisulfite conversion with EpiTect Kit (Qiagen)

data_processing:
Base calling and sequence cleaning was performed with the standard Illumina software under default parameters.
The Clean reads were mapped to the Arabidopsis genome (Version: TAIR10) using Bismark v0.14.3 with default parameters.
PCR duplicates were removed, and the methylation information was obtained with bismark using cutoff 3.
The DMRs were obtained using swDMR with window 200, step size 100, (left 1000, right 1000).
The samples were compared using the Kruskal-Wallis analysis of variance with p-value <0.01.
The DMRs were then annotated using BEDtools.
Genome_build: TAIR10
Supplementary_files_format_and_content: tab-delimited text files include DMR coordinates, Methylation content per sample, Mean sequencing depth in each sample, and p-value of the DMR.
Supplementary_files_format_and_content: tab-delimited text files include DMR coordinates, coding strand, associated gene, Methylation content per sample, Mean sequencing depth in each sample, p-value of the DMR, genomic feature, and description of the DMR.

organism: Arabidopsis thaliana

source_name: Seedling

growth_protocol: Surface sterilized seeds were plated in MS media + 1% Sucrose, and grown under short day conditions (16h dark/8h light) for 11 days.

extract_protocol:
The seedlings were collected in liquid nitrogen, ground with morthat and pestle, and DNA extracted in CTAB, Rnase treated and purified with phenol:chloroform followed by Ethanol precipitation.
Approximately 500ng of genomic DNA were used to generate libraries using premethylated adapters (NEXTFlex Bisulfite-Seq Adapters, Bioo Scientific #511911). The adaptor-ligated fragments were purified by QIAQuick column (QIAGEN) and bisulfite converted using the EpiTect Kit (Qiagen) following the manufacturer’s instructions. The converted DNA was later enriched by 15 cycles of PCR using the Pfu Turbo Cx Polymerase (Agilent), using the specific primers provided by Bios Scientific for enrichment. The library was finally purified with Agencourt AMPure XP beads (Beckman Coulter) according to manufacturer’s instruction.

tag: ecotype

tag: tissue

value: seedling

value: 11 days old

tag: genotype

value: trangenic Col-0, overexpressing Tomato Golden Mosaic Virus TrAP


title: kyp

value: kyp mutant, SALK_130630C


title: old_C57BL6_MPP_141

description:
old_MPP_141
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: Alpha_2B84


title: old_C57BL6_MPP_140

description:
old_MPP_140
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_139

description:
old_MPP_139
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: TQ_H3K27me3 _ChIP-seq

city: Wuhan

first: Zhibin

last: Guo

address: Luo Jia Shan

country: China

institute: Wuhan University

data_processing:
Raw reads were filtered prior to data analysis, including the reads that contained only adaptor sequences, reads with more than 10% unknown bases and reads with more than half of the bases with a quality score of less than 5.0.
After obtaining the clean reads, SOAP2 was used to map the reads to reference genome sequences from Nipponbare (http://www.gramene.org/).
Peak calling analysis was performed using Model-based Analysis of ChIP-Seq (MACS) software 1.4.0 (http://liulab.dfci.harvard.edu/MACS/00README.html) with default parameters (bandwidth, 300 bp; mfold, 32; p-value of 1.00e-05) to call peaks that represent enriched histone modifications.
Genome_build: JP_6.1

organism: Oryza sativa

source_name: the second fully expanded leaves

growth_protocol: Three rice indica varieties, Guangluai-4 (GL), Yangdao-6 (93-11) and Teqing (TQ), and two F1 hybrids, GL×93-11 and GL×TQ, were grown in the summer of 2010 in Wuhan.

extract_protocol:
Chromatin immunoprecipitation (ChIP) was performed using antibodies against H3K27me3 (Abcam, Cat. #ab6002, Cambridge, MA 02139-1517, USA) and H3K36me3 (Abcam, Cat. #ab9050). DNA was extracted using an equal volume phenol:chloroform:isoamyl alcohol and briefly vortexed; DNA was precipitated with a 2.5-volume of 100% EtOH containing 0.3 M sodium acetate and 2 μl of glycogen (20 mg ml–1) at a pH of 5.2.
The resulting ChIP DNA was used to generate Illumina sequencing libraries according to the manufacturer’s protocol: suitable fragments of approximately 200 bp were selected as templates for amplification after incubation at 98°C for 30 s for denaturation, followed by 15 cycles of 98°C for 10 s, 65°C for 30 s, 72°C for 30 s and 72°C for 5 min. The samples were purified using the QIAquick PCR purification kit (Qiagen, Valencia,CA USA) as described in the manufacturer’s protocol.

tag: chip antibody

value: TQ

value: the second fully expanded leaves


title: Col-0

value: wild type


title: TQ_H3K36me3 _ChIP-seq


title: GL×TQ_H3K36me3 _ChIP-seq

value: GL x TQ


title: old_C57BL6_MPP_137

description:
old_MPP_137
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_138

description:
old_MPP_138
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_135

description:
old_MPP_135
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: GL×93-11_H3K27me3 _ChIP-seq


title: GL×93-11_H3K36me3 _ChIP-seq


title: old_C57BL6_MPP_136

description:
old_MPP_136
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: GL×TQ_H3K27me3 _ChIP-seq


title: GL_H3K27me3 _ChIP-seq

value: GL


title: old_C57BL6_MPP_133

description:
old_MPP_133
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: GL_H3K36me3 _ChIP-seq


title: old_C57BL6_MPP_134

description:
old_MPP_134
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_131

description:
old_MPP_131
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 93-11_H3K27me3 _ChIP-seq


title: 93-11_H3K36me3 _ChIP-seq


title: old_C57BL6_MPP_128

description:
old_MPP_128
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_129

description:
old_MPP_129
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_130

description:
old_MPP_130
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_126

description:
old_MPP_126
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_125

description:
old_MPP_125
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_127

description:
old_MPP_127
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_124

description:
old_MPP_124
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 727R_MAP_6h

city: Dublin

first: David

middle: E

last: MacHugh

address: University College Dublin, Belfield

department: College of Agriculture, Food Science and Veterinary Medicine

country: Ireland

institute: University College Dublin

description: RNA-seq (single-end strand-specific)

data_processing:
Cluster generation and sequencing of the pooled RNA-seq libraries was performed on an Illumina® HiSeq 2000 sequencer according to the manufacturer’s instructions.
All of the bioinformatics pipeline information and associated scripts used for computational analyses are available in a GitHub repository at https://github.com/mauracasey/RNA-sequencing. These analyses were performed on a 32-node Compute Server running Linux Ubuntu (version 12.04.2) with 256 GB of RAM and 24 TB of hard disk drive storage.  Initial quality checks were performed on each of the raw reads data files using the FastQC software (version 0.10.1) (www.bioinformatics.babraham.ac.uk/projects/fastqc) to determine the most appropriate read quality filtering methodology. Consequently, a custom perl script was used to deconvolute sequence reads obtained from the flow cell into 35 individual libraries using the indexed barcoded adapters (the script was optimized to work with single-end reads and a 6 nucleotide barcode at the 5'-end of each read).   For initial sequence adaptor removal and quality filtering, appropriate parameters were used with the custom perl script to filter out reads containing adapter sequence (allowing up to 3 mismatches) and reads below a sequence quality threshold (discard reads with more than 25% bases with a phred score <20); all reads were also trimmed of 20 nucleotides at the 3'-ends.
The FastQC package was used to further assess the filtered individual fastq files, revealing that no further filtering steps were required. The STAR RNA-seq aligner software package [version 2.3.0] (Dobin et al., 2013) was used to align filtered sequence reads to the most recent version of the Bos taurus reference genome (UMD3.1.73; Zimin et al., 2009). Aligned sequence reads in individual SAM files were then used for a final FastQC quality check step to detect quality score biases in the aligned reads and all samples successfully passed.  The featureCounts tool, which is part of Subread software package (Liao et al., 2013; 2014), was used to perform count summarization of sense genes. Reads were assigned to a gene if they were not multi-hit reads and if the mapped location was associated with a unique gene on the sense strand. Differential gene expression analysis was performed using the Bioconductor edgeR package (Robinson et al., 2010) with the gene raw counts obtained from featureCounts. The BioMart tool was used first for gene annotation with Ensembl gene IDs (Durinck et al., 2009). Ribosomal RNA genes were filtered out and lowly expressed genes were also removed with a minimally-set threshold of one count per million [CPM] in at least seven individual libraries (Robinson et al., 2010). For each library, a normalization factor was calculated based on RNA composition among libraries (computed using trimmed mean of M-values). For the present study, at this stage the seven 0 h control samples were removed from the data set and not used for any subsequent bioinformatics, differential gene expression or downstream data analyses.
Using the edgeR package, differentially expressed (DE) genes between MAP-infected versus non-infected control MDM samples for each time point post-infection (2 hpi and 6 hpi) were obtained using paired-sample statistics by fitting a negative binomial generalized linear model to each gene. Multiple testing correction was performed using the Benjamini-Hochberg method with an FDR threshold of ≤ 0.05.
The RNA-seq DE gene lists obtained for each time point post-infection were used for downstream systems analysis to identify important cellular pathways and functional processes with the Ingenuity® Systems Pathway Analysis Knowledgebase (IPA; www.ingenuity.com; Summer Release, June 2014). This approach was used to identify cellular pathways and gene ontology categories that were overrepresented based on the list of DE genes at each of the two time points post-infection (FDR-adjusted P value threshold ≤ 0.05).
Genome_build: Bos taurus reference genome version 3.1.73
Supplementary_files_format_and_content: Tab-delimited text files include raw count values per genes

organism: Bos taurus

source_name: Monocyte-derived macrophages

growth_protocol: Seven age-matched (four-year old) Holstein-Friesian females were used for this study and have previously been described by our group. These animals had been maintained under uniform housing conditions and nutritional regimens at the UCD Lyons Research Farm (Newcastle, County Kildare, Ireland). The animals did not have a recent history of Johne’s disease and were also negative for infection with M. bovis.

extract_protocol:
Total RNA was extracted from each individual sample and purified individually at 0, 2 and 6 hpi and used to prepare pooled strand-specific RNA-seq libraries as previously described by us (Nalpas et al., 2013). RNA was extracted using an RNeasy kit incorporating an on-column DNase treatment step (Qiagen Ltd., Crawley, UK) according to the manufacturer’s instructions. The quantity and quality of the RNA was assessed using a NanoDrop™ 1000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA) and an Agilent 2100 Bioanalyzer with an RNA 6000 Nano LabChip kit (Agilent Technologies Ltd., Cork, Ireland). A260/280 ratios greater than 2.0 and RNA integrity numbers [RINs] greater than 8.5 were obtained for all total RNA samples purified across the infection time course.
The protocol used for RNA-seq library preparation was adapted from a protocol previously published by our group (Nalpas et al., 2013). Thirty-five strand-specific Illumina® RNA-seq libraries were generated (seven libraries for the MAP-infected and control groups at each time point and seven 0 h time point control samples) using 150200 ng of total RNA. Samples were heated at 65°C for 5 min to disrupt RNA secondary structure and purification of poly(A)+ RNA was performed using the Dynabeads® mRNA DIRECT™ Micro Kit according to the manufacturer’s instructions (Invitrogen™/Life Technologies Ltd., Paisley, UK). Purified poly(A)+ RNA was then fragmented using 1× RNA Fragmentation Reagent (Ambion/Life Technologies Ltd., Warrington, UK) for 5 min at 70°C and precipitated using 68 mM sodium acetate pH 5.2 (Ambion), 227 ng/μl glycogen (Ambion) and 30 μl of 100% ethanol (Sigma-Aldrich Ltd., Dublin, Ireland). The RNA pellets obtained were then washed with 80% ethanol, air-dried for 10 min at room temperature and then re-suspended in 10.5 µl of DNase- and RNase-free molecular biology-grade H2O.  Synthesis of first strand cDNA was performed by incubating fragmented RNA with 261 mM Random Hexamer Primers (Invitrogen™), 1× first strand buffer (Invitrogen™); 10 mM DTT (Invitrogen™); 0.5 mM dNTPs; 20 U RNaseOUT™ Recombinant Ribonuclease Inhibitor; and 200 U SuperScript® II Reverse Transcriptase (Invitrogen™) using the following temperature profile: 25°C for 10 min, 42°C for 50 min, and 70°C for 15 min. First strand synthesis reaction mixtures were then purified using MicroSpin™ G-50 columns according to the manufacturer’s instructions (GE Healthcare UK Ltd., Buckinghamshire, UK).   Second strand cDNA synthesis, involving the incorporation of uracil, was performed by adding the first strand cDNA synthesis reaction to a second strand reaction mix consisting of 0.065× first strand buffer (Invitrogen™); 1× second strand buffer (Invitrogen™); a dNTP solution consisting of a final concentration of 0.3 mM dATP, dCTP, dGTP (Sigma-Aldrich) and 0.3 mM dUTP (Bioline Reagents Ltd., London, UK); 1 mM DTT (Invitrogen™); 2 U RNase H (Invitrogen™) and 50 U E. coli DNA Polymerase I (Invitrogen™). Reactions were incubated at 16°C for 2.5 h. The double stranded cDNA was subsequently purified using a QIAquick PCR Purification kit (Qiagen) according to the manufacturer’s instructions and eluted in 30 µl of the provided elution buffer.  Blunt-end repair of cDNA samples was performed in 100 µl reaction volumes containing 1× T4 DNA ligase buffer with 10 mM dATP (New England Biolabs® Inc., Ipswich, MA, USA), 0.4 mM of each dNTP (Invitrogen™), 15 U T4 DNA polymerase (New England Biolabs®), 5 U DNA Polymerase I Large [Klenow] Fragment (New England Biolabs®) and 50 U T4 polynucleotide kinase (New England Biolabs®). Reactions were incubated at 20°C for 30 min and the cDNA was then purified using a QIAquick PCR Purification Kit (Qiagen) according to the manufacturer’s instructions and eluted in 32 µl of the provided elution buffer.  Illumina RNA-seq adaptor ligation reactions (50 µl volumes) were performed using 21 µl of each of the phosphorylated blunt-ended cDNA (with 3'-dATP overhangs) samples and 1× Quick DNA ligase buffer (New England Biolabs®); 30 nM custom indexed single-read adaptors (Supplementary Table 1) and 15 U T4 DNA ligase (Invitrogen™). Reaction mixes were incubated at room temperature for 15 min and purified using a QIAquick MinElute Kit according to the manufacturer’s instructions (Qiagen) and eluted in 10 µl of the provided elution buffer. Adaptor-ligated cDNA was gel-purified using 2.5% agarose gels stained with 1 μg/ml ethidium bromide (Invitrogen™). Gels were electrophoresed at 100 V using 1× TAE buffer (Invitrogen™) for 75 min at room temperature. Size-fractionated bands corresponding to 200 bp (+50 bp) were excised from each sample and purified using a QIAquick Gel Extraction kit (Qiagen) according to the manufacturer’s instructions and eluted in 30 µl of elution buffer. For generation of strand-specific RNA-seq libraries, the second strand of the gel-purified adapter-ligated cDNA containing uracil was enzymatically digested in 30 µl reaction volumes containing 1× Uracil-DNA Glycosylase buffer and 1 U Uracil-DNA Glycosylase (Bioline). These reactions were incubated at 37°C for 15 min followed by 94°C for 10 min.   PCR enrichment amplifications (25 µl) containing 9 μl of second strand-digested, adaptor-ligated cDNA; 1× Phusion® High-Fidelity DNA polymerase buffer (New England Biolabs); 334 nM each Illumina® PCR primer (Illumina® Inc., San Diego, CA, USA); 0.4 mM each of dATP, dCTP, DGTP and dTTP (Invitrogen™) and 1 U Phusion® High-Fidelity DNA polymerase (New England Biolabs®). PCR amplification reactions were performed with the following temperature cycling profile: 98°C initial denaturation for 30 s; 18 cycles of 98°C for 10 s, 65°C for 30 s, and 72°C for 30 s; and 72°C final extension step for 5 min. PCR products were visualized following electrophoresis on a 2% agarose gel stained with ethidium bromide (0.6 µg/ml; Invitrogen™) and purified to remove PCR-generated adaptor-dimers using an Agencourt AMPure XP kit (Beckman Coulter Genomics, Danvers, MA, USA) according to the manufacturer’s instructions with final elution in 30 μl of 1× TE buffer.  All RNA-seq libraries were quantified using a Qubit® Fluorometer (Invitrogen™). RNA-seq library quality was assessed using an Agilent Bioanalyzer and Agilent High sensitivity DNA chip (Agilent) and confirmed that insert sizes were 200-250 bp for all individual libraries. Individual RNA-seq libraries were standardized and pooled in equimolar quantities (10 µM for each individual library). The quantity and quality of the final pooled library was assessed as described above prior to sequencing.  Cluster generation and sequencing of the pooled RNA-seq libraries was performed on an Illumina® HiSeq 2000 sequencer according to the manufacturer’s instructions.

treatment_protocol: The methods used to isolate, purify and infect bovine MDM with M. avium subsp. paratuberculosis (MAP) have also been previously described by our group (Taraktsoglou et al., 2011; MacHugh et al., 2012; Magee et al., 2012; Nalpas et al., 2013). MDM from seven age-matched, female Holstein-Friesian cattle were infected in vitro with a clinical isolate of MAP (MOI 2:1) and parallel non-infected control MDM samples were also generated.

value: Holstein-Friesian

tag: Sex

value: Female

value: Four years old

tag: animal id

value: Monocyte-derived macrophages

tag: infection status

value: Infected


title: old_C57BL6_MPP_123

description:
old_MPP_123
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx

value: 22 months old

value: multipotent progenitor


title: 724R_MAP_6h

description: RNA-seq (single-end strand-specific)


title: 721_MAP_6h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_121

description:
old_MPP_121
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_122

description:
old_MPP_122
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_118

description:
old_MPP_118
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_132

description:
old_MPP_132
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 713_MAP_6h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_120

description:
old_MPP_120
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 706_MAP_6h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_116

description:
old_MPP_116
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_117

description:
old_MPP_117
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 724R_MAP_2h

description: RNA-seq (single-end strand-specific)


title: 700_MAP_6h

description: RNA-seq (single-end strand-specific)


title: 716_MAP_2h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_115

description:
old_MPP_115
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 727R_MAP_2h

description: RNA-seq (single-end strand-specific)


title: 706_MAP_2h

description: RNA-seq (single-end strand-specific)


title: 721_MAP_2h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_114

description:
old_MPP_114
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_111

description:
old_MPP_111
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 700_MAP_2h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_113

description:
old_MPP_113
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 716_MAP_6h

description: RNA-seq (single-end strand-specific)


title: 724R_CN_6h

description: RNA-seq (single-end strand-specific)

value: Control


title: old_C57BL6_MPP_119

description:
old_MPP_119
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_110

description:
old_MPP_110
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_108

description:
old_MPP_108
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 721_CN_6h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_107

description:
old_MPP_107
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 716_CN_6h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_104

description:
old_MPP_104
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 706_CN_6h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_103

description:
old_MPP_103
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 727R_CN_2h

description: RNA-seq (single-end strand-specific)


title: 700_CN_6h

description: RNA-seq (single-end strand-specific)


title: 721_CN_2h

description: RNA-seq (single-end strand-specific)


title: 724R_CN_2h

description: RNA-seq (single-end strand-specific)


title: 727R_CN_6h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_101

description:
old_MPP_101
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_100

description:
old_MPP_100
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 706_CN_2h

description: RNA-seq (single-end strand-specific)


title: 700_CN_2h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_109

description:
old_MPP_109
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 716_CN_2h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_98

description:
old_MPP_98
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_99

description:
old_MPP_99
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 727R_CN_0h

description: RNA-seq (single-end strand-specific)


title: 713_CN_6h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_97

description:
old_MPP_97
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_106

description:
old_MPP_106
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_105

description:
old_MPP_105
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_96

description:
old_MPP_96
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 724R_CN_0h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_95

description:
old_MPP_95
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 721_CN_0h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_112

description:
old_MPP_112
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_94

description:
old_MPP_94
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 716_CN_0h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_93

description:
old_MPP_93
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_92

description:
old_MPP_92
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 713_CN_2h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_102

description:
old_MPP_102
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 713_CN_0h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_91

description:
old_MPP_91
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_90

description:
old_MPP_90
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: 700_CN_0h

description: RNA-seq (single-end strand-specific)


title: 706_CN_0h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_MPP_89

description:
old_MPP_89
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_88

description:
old_MPP_88
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: CD14 PBS 5

city: Gold Coast

first: Glen

middle: C

last: Ulett

state: QLD

address: Parklands Drive

department: School of Medical Science

country: Australia

institute: Griffith University

data_processing:
Illumina bcl2fastq version 1.8.4 software was used creating the fastq files from the bcl files.
TopHat version 2.0.11 was used to align the raw RNA-Seq fastq reads to the mouse reference genome version 10 from the UCSC genome browser gateway using the short read aligner Bowtie version 2.1.0. TopHat was also used to analyse the mapping results to identify splice junctions between exons. See (i). Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009; 25:1105-11 and (ii). Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009; 10:R25. and (iii). Trapnell C, Roberts A, Goff L, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 2012; 7:562-78
Cufflinks version 2.1.1 used the aligned reads from TopHat to assemble transcripts, estimate their abundances and test for differential expression and regulation. Cuffmerge, which is part of Cufflinks, merged the assembled transcripts to a reference annotation and tracked Cufflinks transcripts across multiple experiments. Finally, Cuffdiff was used to identify significant changes in transcript expression, splicing and promoter use. Genes that met certain criteria (i.e. fold change ≥ ±2.0 and q-value < 0.05) were further analyzed using the IPA tool. See (i) Trapnell C, Roberts A, Goff L, et al. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 2012; 7:562-78 and (ii). Trapnell C, Williams BA, Pertea G, et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 2010; 28:511-5
Genome_build: mm10
Supplementary_files_format_and_content: output file from Cufflinks Cuffnorm that include FPKM values, normalized counts and gene symbol for each sample.

source_name: CD14-deficient B6.129S-Cd14tm1Frm/J mice Control

growth_protocol: O/N LB culture of CFT073 UPEC (Uropathogenic Escherichia coli) at 37C was collected and concentrated into PBS by centrifugation and washes in PBS

extract_protocol:
Trizol extraction of total RNA was performed according to the manufacturer's instructions
Total RNA was subjected to two rounds of poly A+ selection and converted to cDNA. We used TruSeq library generation kits as per the manufacturer’s instructions (Illumina, San Diego, CA, USA). Library construction consisted of random fragmentation of the polyA mRNA, followed by cDNA production using random primers. The ends of the cDNA were repaired, A-tailed and adaptors ligated for indexing (up to twelve different barcodes per lane) during the sequencing runs. The cDNA libraries were quantitated using qPCR in a Roche LightCycler 480 with the Kapa Biosystems kit for library quantitation (Kapa Biosystems, Woburn, MA) prior to cluster generation. Clusters were generated to yield approximately 725K-825K clusters/mm2. Cluster density and quality was determined during the run after the first base addition parameters were assessed. We ran paired end 2X50bp sequencing runs to align the cDNA sequences to the reference genome

treatment_protocol: Mice were catheterized using a sterile Teflon catheter and 40 microlitres of PBS containing 10^9 CFU was instilled transurethrally into the bladder (controls received PBS). Whole bladders collected at 8h following infection

value: CD14-deficient B6.129S-Cd14tm1Frm/J

tag: infected with

value: PBS (control)

value: whole bladder


title: CD14 PBS 1


title: old_C57BL6_MPP_86

description:
old_MPP_86
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_87

description:
old_MPP_87
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_85

description:
old_MPP_85
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: CD14 UPEC 5

source_name: CD14-deficient B6.129S-Cd14tm1Frm/J mice Infected

value: CFT073 UPEC


title: CD14 PBS 2


title: CD14 UPEC 4


title: CD14 PBS 4


title: old_C57BL6_MPP_84

description:
old_MPP_84
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_83

description:
old_MPP_83
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: CD14 UPEC 3


title: CD14 UPEC 2


title: old_C57BL6_MPP_82

description:
old_MPP_82
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: CD14 UPEC 1


title: old_C57BL6_MPP_80

description:
old_MPP_80
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: WT PBS 5

source_name: C57BL/6 Control


title: WT PBS 4


title: WT PBS 3


title: old_C57BL6_MPP_81

description:
old_MPP_81
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_79

description:
old_MPP_79
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_78

description:
old_MPP_78
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_77

description:
old_MPP_77
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: WT PBS 2


title: CD14 PBS 3


title: WT PBS 1


title: WT UPEC 5

source_name: C57BL/6 mice Infected


title: WT UPEC 4


title: old_C57BL6_MPP_76

description:
old_MPP_76
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: WT UPEC 3


title: old_C57BL6_MPP_74

description:
old_MPP_74
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_73

description:
old_MPP_73
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: WT UPEC 2


title: old_C57BL6_MPP_72

description:
old_MPP_72
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: WT UPEC 1


title: old_C57BL6_MPP_71

description:
old_MPP_71
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_70

description:
old_MPP_70
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_population_STHSC

description:
young_DBA_population_STHSC
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx

data_processing:
Paired-end 25bp reads were mapped to the UCSC mouse transcriptome by Bowtie, allowing up to two mismatches, and expression levels of all UCSC genes were estimated by RSEM with default parameters (TPM values).
Genome_build: mm9
Supplementary_files_format_and_content: DBA_GEO_all is an Excel sheet that contains RSEM values for expression levels of UCSC mouse transcripts in single cells and in population, including young and old LT-HSCs, ST-HSCs and MPPs. The first column includes gene symbols.

value: 2-3 months old

value: short term hematopoietic stem cell


title: old_C57BL6_MPP_68

description:
old_MPP_68
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_71

description:
young_DBA_STHSC_71
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_69

description:
young_DBA_STHSC_69
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_70

description:
young_DBA_STHSC_70
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_67

description:
old_MPP_67
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_66

description:
old_MPP_66
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_66

description:
young_DBA_STHSC_66
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_67

description:
young_DBA_STHSC_67
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_64

description:
old_MPP_64
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_63

description:
old_MPP_63
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_75

description:
old_MPP_75
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_65

description:
young_DBA_STHSC_65
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_64

description:
young_DBA_STHSC_64
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_62

description:
old_MPP_62
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_63

description:
young_DBA_STHSC_63
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_61

description:
old_MPP_61
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_62

description:
young_DBA_STHSC_62
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_60

description:
old_MPP_60
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_61

description:
young_DBA_STHSC_61
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_59

description:
old_MPP_59
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_58

description:
old_MPP_58
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_69

description:
old_MPP_69
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_60

description:
young_DBA_STHSC_60
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_59

description:
young_DBA_STHSC_59
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_58

description:
young_DBA_STHSC_58
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_57

description:
old_MPP_57
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_68

description:
young_DBA_STHSC_68
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_56

description:
old_MPP_56
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_55

description:
old_MPP_55
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_56

description:
young_DBA_STHSC_56
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_57

description:
young_DBA_STHSC_57
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_65

description:
old_MPP_65
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_54

description:
old_MPP_54
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_55

description:
young_DBA_STHSC_55
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_54

description:
young_DBA_STHSC_54
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_53

description:
old_MPP_53
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_53

description:
young_DBA_STHSC_53
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_52

description:
young_DBA_STHSC_52
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_51

description:
young_DBA_STHSC_51
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_52

description:
old_MPP_52
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_49

description:
old_MPP_49
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_50

description:
old_MPP_50
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_49

description:
young_DBA_STHSC_49
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_48

description:
old_MPP_48
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_47

description:
old_MPP_47
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_50

description:
young_DBA_STHSC_50
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_46

description:
young_DBA_STHSC_46
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_45

description:
old_MPP_45
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_47

description:
young_DBA_STHSC_47
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_43

description:
old_MPP_43
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_46

description:
old_MPP_46
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_42

description:
old_MPP_42
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_41

description:
young_DBA_STHSC_41
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_51

description:
old_MPP_51
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_42

description:
young_DBA_STHSC_42
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_45

description:
young_DBA_STHSC_45
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_41

description:
old_MPP_41
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_40

description:
old_MPP_40
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_39

description:
old_MPP_39
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_43

description:
young_DBA_STHSC_43
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_38

description:
old_MPP_38
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_44

description:
young_DBA_STHSC_44
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_39

description:
young_DBA_STHSC_39
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_38

description:
young_DBA_STHSC_38
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_36

description:
old_MPP_36
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_37

description:
young_DBA_STHSC_37
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_37

description:
old_MPP_37
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_36

description:
young_DBA_STHSC_36
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_48

description:
young_DBA_STHSC_48
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_35

description:
young_DBA_STHSC_35
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_40

description:
young_DBA_STHSC_40
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_35

description:
old_MPP_35
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_34

description:
old_MPP_34
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_44

description:
old_MPP_44
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_34

description:
young_DBA_STHSC_34
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_32

description:
old_MPP_32
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_33

description:
young_DBA_STHSC_33
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_32

description:
young_DBA_STHSC_32
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_30

description:
old_MPP_30
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_29

description:
young_DBA_STHSC_29
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_29

description:
old_MPP_29
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_28

description:
young_DBA_STHSC_28
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_28

description:
old_MPP_28
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_31

description:
old_MPP_31
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_27

description:
old_MPP_27
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_26

description:
old_MPP_26
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_25

description:
old_MPP_25
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_33

description:
old_MPP_33
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_31

description:
young_DBA_STHSC_31
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_24

description:
old_MPP_24
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_26

description:
young_DBA_STHSC_26
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_23

description:
old_MPP_23
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_27

description:
young_DBA_STHSC_27
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_21

description:
old_MPP_21
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_22

description:
young_DBA_STHSC_22
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_25

description:
young_DBA_STHSC_25
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_22

description:
old_MPP_22
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_24

description:
young_DBA_STHSC_24
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_23

description:
young_DBA_STHSC_23
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_21

description:
young_DBA_STHSC_21
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_19

description:
old_MPP_19
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_20

description:
young_DBA_STHSC_20
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_18

description:
old_MPP_18
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_19

description:
young_DBA_STHSC_19
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_17

description:
old_MPP_17
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_30

description:
young_DBA_STHSC_30
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_16

description:
old_MPP_16
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_16

description:
young_DBA_STHSC_16
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_17

description:
young_DBA_STHSC_17
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_14

description:
old_MPP_14
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_13

description:
old_MPP_13
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_11

description:
old_MPP_11
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_14

description:
young_DBA_STHSC_14
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_13

description:
young_DBA_STHSC_13
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_12

description:
young_DBA_STHSC_12
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_20

description:
old_MPP_20
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_15

description:
young_DBA_STHSC_15
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_11

description:
young_DBA_STHSC_11
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_6

description:
old_MPP_6
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_10

description:
old_MPP_10
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_7

description:
old_MPP_7
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_10

description:
young_DBA_STHSC_10
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_8

description:
old_MPP_8
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_9

description:
old_MPP_9
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_12

description:
old_MPP_12
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_5

description:
old_MPP_5
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_4

description:
old_MPP_4
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_7

description:
young_DBA_STHSC_7
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_8

description:
young_DBA_STHSC_8
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_18

description:
young_DBA_STHSC_18
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_15

description:
old_MPP_15
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_5

description:
young_DBA_STHSC_5
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_6

description:
young_DBA_STHSC_6
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_3

description:
old_MPP_3
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_3

description:
young_DBA_STHSC_3
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_MPP_1

description:
old_MPP_1
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_MPP_2

description:
old_MPP_2
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_4

description:
young_DBA_STHSC_4
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_STHSC_9

description:
young_DBA_STHSC_9
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_192

description:
old_ST_HSC_192
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_1

description:
young_DBA_STHSC_1
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_population_MPP2

description:
young_DBA_population_MPP2
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_87

description:
young_DBA_MPP_87
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_88

description:
young_DBA_MPP_88
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_population_MPP1

description:
young_DBA_population_MPP1
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_86

description:
young_DBA_MPP_86
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_89

description:
young_DBA_MPP_89
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_185

description:
old_ST_HSC_185
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_190

description:
old_ST_HSC_190
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_187

description:
old_ST_HSC_187
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_85

description:
young_DBA_MPP_85
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_184

description:
old_ST_HSC_184
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_84

description:
young_DBA_MPP_84
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_183

description:
old_ST_HSC_183
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_83

description:
young_DBA_MPP_83
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_182

description:
old_ST_HSC_182
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_82

description:
young_DBA_MPP_82
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_181

description:
old_ST_HSC_181
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_STHSC_2

description:
young_DBA_STHSC_2
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: 713_MAP_2h

description: RNA-seq (single-end strand-specific)


title: old_C57BL6_STHSC_191

description:
old_ST_HSC_191
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_80

description:
young_DBA_MPP_80
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_179

description:
old_ST_HSC_179
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_180

description:
old_ST_HSC_180
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_79

description:
young_DBA_MPP_79
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_188

description:
old_ST_HSC_188
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_81

description:
young_DBA_MPP_81
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_189

description:
old_ST_HSC_189
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_178

description:
old_ST_HSC_178
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_78

description:
young_DBA_MPP_78
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_186

description:
old_ST_HSC_186
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_177

description:
old_ST_HSC_177
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_76

description:
young_DBA_MPP_76
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_176

description:
old_ST_HSC_176
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_77

description:
young_DBA_MPP_77
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_175

description:
old_ST_HSC_175
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_74

description:
young_DBA_MPP_74
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_73

description:
young_DBA_MPP_73
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_72

description:
young_DBA_MPP_72
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_75

description:
young_DBA_MPP_75
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_173

description:
old_ST_HSC_173
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_172

description:
old_ST_HSC_172
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_174

description:
old_ST_HSC_174
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_71

description:
young_DBA_MPP_71
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_170

description:
old_ST_HSC_170
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_70

description:
young_DBA_MPP_70
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_169

description:
old_ST_HSC_169
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_171

description:
old_ST_HSC_171
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_69

description:
young_DBA_MPP_69
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_168

description:
old_ST_HSC_168
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_68

description:
young_DBA_MPP_68
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_66

description:
young_DBA_MPP_66
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_166

description:
old_ST_HSC_166
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_167

description:
old_ST_HSC_167
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_165

description:
old_ST_HSC_165
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_164

description:
old_ST_HSC_164
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_65

description:
young_DBA_MPP_65
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_161

description:
old_ST_HSC_161
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_61

description:
young_DBA_MPP_61
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_62

description:
young_DBA_MPP_62
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_63

description:
young_DBA_MPP_63
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_163

description:
old_ST_HSC_163
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_64

description:
young_DBA_MPP_64
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_160

description:
old_ST_HSC_160
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_59

description:
young_DBA_MPP_59
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_60

description:
young_DBA_MPP_60
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_58

description:
young_DBA_MPP_58
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_159

description:
old_ST_HSC_159
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_158

description:
old_ST_HSC_158
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_157

description:
old_ST_HSC_157
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_156

description:
old_ST_HSC_156
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_55

description:
young_DBA_MPP_55
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_54

description:
young_DBA_MPP_54
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_155

description:
old_ST_HSC_155
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_67

description:
young_DBA_MPP_67
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_153

description:
old_ST_HSC_153
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_53

description:
young_DBA_MPP_53
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_52

description:
young_DBA_MPP_52
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_154

description:
old_ST_HSC_154
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_162

description:
old_ST_HSC_162
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_150

description:
old_ST_HSC_150
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_151

description:
old_ST_HSC_151
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_50

description:
young_DBA_MPP_50
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_152

description:
old_ST_HSC_152
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_49

description:
young_DBA_MPP_49
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_148

description:
old_ST_HSC_148
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_147

description:
old_ST_HSC_147
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_47

description:
young_DBA_MPP_47
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_48

description:
young_DBA_MPP_48
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_146

description:
old_ST_HSC_146
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_57

description:
young_DBA_MPP_57
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_51

description:
young_DBA_MPP_51
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_145

description:
old_ST_HSC_145
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_46

description:
young_DBA_MPP_46
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_149

description:
old_ST_HSC_149
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_56

description:
young_DBA_MPP_56
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_143

description:
old_ST_HSC_143
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_142

description:
old_ST_HSC_142
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_43

description:
young_DBA_MPP_43
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_45

description:
young_DBA_MPP_45
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_141

description:
old_ST_HSC_141
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_42

description:
young_DBA_MPP_42
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_41

description:
young_DBA_MPP_41
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_140

description:
old_ST_HSC_140
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_40

description:
young_DBA_MPP_40
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_138

description:
old_ST_HSC_138
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_39

description:
young_DBA_MPP_39
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_37

description:
young_DBA_MPP_37
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_136

description:
old_ST_HSC_136
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_38

description:
young_DBA_MPP_38
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_135

description:
old_ST_HSC_135
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_34

description:
young_DBA_MPP_34
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_144

description:
old_ST_HSC_144
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_134

description:
old_ST_HSC_134
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_33

description:
young_DBA_MPP_33
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_35

description:
young_DBA_MPP_35
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_131

description:
old_ST_HSC_131
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_44

description:
young_DBA_MPP_44
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_133

description:
old_ST_HSC_133
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_132

description:
old_ST_HSC_132
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_32

description:
young_DBA_MPP_32
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_130

description:
old_ST_HSC_130
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_30

description:
young_DBA_MPP_30
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_28

description:
young_DBA_MPP_28
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_29

description:
young_DBA_MPP_29
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_126

description:
old_ST_HSC_126
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_27

description:
young_DBA_MPP_27
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_127

description:
old_ST_HSC_127
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_137

description:
old_ST_HSC_137
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_139

description:
old_ST_HSC_139
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_125

description:
old_ST_HSC_125
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_25

description:
young_DBA_MPP_25
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_24

description:
young_DBA_MPP_24
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_26

description:
young_DBA_MPP_26
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_124

description:
old_ST_HSC_124
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_129

description:
old_ST_HSC_129
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_36

description:
young_DBA_MPP_36
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_123

description:
old_ST_HSC_123
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_122

description:
old_ST_HSC_122
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_31

description:
young_DBA_MPP_31
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_120

description:
old_ST_HSC_120
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_21

description:
young_DBA_MPP_21
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_23

description:
young_DBA_MPP_23
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_118

description:
old_ST_HSC_118
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_119

description:
old_ST_HSC_119
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_20

description:
young_DBA_MPP_20
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_128

description:
old_ST_HSC_128
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_22

description:
young_DBA_MPP_22
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_117

description:
old_ST_HSC_117
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_17

description:
young_DBA_MPP_17
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_19

description:
young_DBA_MPP_19
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_18

description:
young_DBA_MPP_18
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_16

description:
young_DBA_MPP_16
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_116

description:
old_ST_HSC_116
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_115

description:
old_ST_HSC_115
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_15

description:
young_DBA_MPP_15
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_114

description:
old_ST_HSC_114
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_14

description:
young_DBA_MPP_14
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_113

description:
old_ST_HSC_113
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_112

description:
old_ST_HSC_112
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_12

description:
young_DBA_MPP_12
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_11

description:
young_DBA_MPP_11
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_13

description:
young_DBA_MPP_13
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_111

description:
old_ST_HSC_111
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_121

description:
old_ST_HSC_121
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_110

description:
old_ST_HSC_110
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_10

description:
young_DBA_MPP_10
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_109

description:
old_ST_HSC_109
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_108

description:
old_ST_HSC_108
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_9

description:
young_DBA_MPP_9
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_8

description:
young_DBA_MPP_8
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_7

description:
young_DBA_MPP_7
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_6

description:
young_DBA_MPP_6
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_MPP_5

description:
young_DBA_MPP_5
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_107

description:
old_ST_HSC_107
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_4

description:
young_DBA_MPP_4
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_106

description:
old_ST_HSC_106
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_104

description:
old_ST_HSC_104
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_3

description:
young_DBA_MPP_3
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_103

description:
old_ST_HSC_103
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_102

description:
old_ST_HSC_102
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_105

description:
old_ST_HSC_105
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_2

description:
young_DBA_MPP_2
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_100

description:
old_ST_HSC_100
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_population_LTHSC2

description:
young_DBA_population_LTHSC2
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx

value: long term hematopoietic stem cell


title: young_DBA_population_LTHSC1

description:
young_DBA_population_LTHSC1
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_97

description:
old_ST_HSC_97
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_98

description:
old_ST_HSC_98
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_112

description:
young_DBA_LTHSC_112
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_115

description:
young_DBA_LTHSC_115
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_114

description:
young_DBA_LTHSC_114
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_95

description:
old_ST_HSC_95
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_96

description:
old_ST_HSC_96
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_99

description:
old_ST_HSC_99
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_MPP_1

description:
young_DBA_MPP_1
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_111

description:
young_DBA_LTHSC_111
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_93

description:
old_ST_HSC_93
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_94

description:
old_ST_HSC_94
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_101

description:
old_ST_HSC_101
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_109

description:
young_DBA_LTHSC_109
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_108

description:
young_DBA_LTHSC_108
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_105

description:
young_DBA_LTHSC_105
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_106

description:
young_DBA_LTHSC_106
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_107

description:
young_DBA_LTHSC_107
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_90

description:
old_ST_HSC_90
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_87

description:
old_ST_HSC_87
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_88

description:
old_ST_HSC_88
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_91

description:
old_ST_HSC_91
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_113

description:
young_DBA_LTHSC_113
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_89

description:
old_ST_HSC_89
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_104

description:
young_DBA_LTHSC_104
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_86

description:
old_ST_HSC_86
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_103

description:
young_DBA_LTHSC_103
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_83

description:
old_ST_HSC_83
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_85

description:
old_ST_HSC_85
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_101

description:
young_DBA_LTHSC_101
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_84

description:
old_ST_HSC_84
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_92

description:
old_ST_HSC_92
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_81

description:
old_ST_HSC_81
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_100

description:
young_DBA_LTHSC_100
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_82

description:
old_ST_HSC_82
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_99

description:
young_DBA_LTHSC_99
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_110

description:
young_DBA_LTHSC_110
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_98

description:
young_DBA_LTHSC_98
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_80

description:
old_ST_HSC_80
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_76

description:
old_ST_HSC_76
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_77

description:
old_ST_HSC_77
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_97

description:
young_DBA_LTHSC_97
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_94

description:
young_DBA_LTHSC_94
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_79

description:
old_ST_HSC_79
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_74

description:
old_ST_HSC_74
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_95

description:
young_DBA_LTHSC_95
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_102

description:
young_DBA_LTHSC_102
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_73

description:
old_ST_HSC_73
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_93

description:
young_DBA_LTHSC_93
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_96

description:
young_DBA_LTHSC_96
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_78

description:
old_ST_HSC_78
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_90

description:
young_DBA_LTHSC_90
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_91

description:
young_DBA_LTHSC_91
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_87

description:
young_DBA_LTHSC_87
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_72

description:
old_ST_HSC_72
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_71

description:
old_ST_HSC_71
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_70

description:
old_ST_HSC_70
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_88

description:
young_DBA_LTHSC_88
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_86

description:
young_DBA_LTHSC_86
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_85

description:
young_DBA_LTHSC_85
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_68

description:
old_ST_HSC_68
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_69

description:
old_ST_HSC_69
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_89

description:
young_DBA_LTHSC_89
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_75

description:
old_ST_HSC_75
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_84

description:
young_DBA_LTHSC_84
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_67

description:
old_ST_HSC_67
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_83

description:
young_DBA_LTHSC_83
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_92

description:
young_DBA_LTHSC_92
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_66

description:
old_ST_HSC_66
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_65

description:
old_ST_HSC_65
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_82

description:
young_DBA_LTHSC_82
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_64

description:
old_ST_HSC_64
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_62

description:
old_ST_HSC_62
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_80

description:
young_DBA_LTHSC_80
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_63

description:
old_ST_HSC_63
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_79

description:
young_DBA_LTHSC_79
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_78

description:
young_DBA_LTHSC_78
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_77

description:
young_DBA_LTHSC_77
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_60

description:
old_ST_HSC_60
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_61

description:
old_ST_HSC_61
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_76

description:
young_DBA_LTHSC_76
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_57

description:
old_ST_HSC_57
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_56

description:
old_ST_HSC_56
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_59

description:
old_ST_HSC_59
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_75

description:
young_DBA_LTHSC_75
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_74

description:
young_DBA_LTHSC_74
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_73

description:
young_DBA_LTHSC_73
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_72

description:
young_DBA_LTHSC_72
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_58

description:
old_ST_HSC_58
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_71

description:
young_DBA_LTHSC_71
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_54

description:
old_ST_HSC_54
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_53

description:
old_ST_HSC_53
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_70

description:
young_DBA_LTHSC_70
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_81

description:
young_DBA_LTHSC_81
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_52

description:
old_ST_HSC_52
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_49

description:
old_ST_HSC_49
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_65

description:
young_DBA_LTHSC_65
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_69

description:
young_DBA_LTHSC_69
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_51

description:
old_ST_HSC_51
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_68

description:
young_DBA_LTHSC_68
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_50

description:
old_ST_HSC_50
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_48

description:
old_ST_HSC_48
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_66

description:
young_DBA_LTHSC_66
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_55

description:
old_ST_HSC_55
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_60

description:
young_DBA_LTHSC_60
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_47

description:
old_ST_HSC_47
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_40

description:
old_ST_HSC_40
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_64

description:
young_DBA_LTHSC_64
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_46

description:
old_ST_HSC_46
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_42

description:
old_ST_HSC_42
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_61

description:
young_DBA_LTHSC_61
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_63

description:
young_DBA_LTHSC_63
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_39

description:
old_ST_HSC_39
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_62

description:
young_DBA_LTHSC_62
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_45

description:
old_ST_HSC_45
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_59

description:
young_DBA_LTHSC_59
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_41

description:
old_ST_HSC_41
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_36

description:
old_ST_HSC_36
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: young_DBA_LTHSC_54

description:
young_DBA_LTHSC_54
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_53

description:
young_DBA_LTHSC_53
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: young_DBA_LTHSC_57

description:
young_DBA_LTHSC_57
single cell RNA-Seq
processed data file: DBA_GEO_all.xlsx


title: old_C57BL6_STHSC_43

description:
old_ST_HSC_43
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx


title: old_C57BL6_STHSC_38

description:
old_ST_HSC_38
single cell RNA-Seq
processed data file: GEO_HSC_single_data.xlsx