title: ChIP-seq from gastrocnemius medialis (ENCLB026PVO)

description:
https://www.encodeproject.org/experiments/ENCSR897RRA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR897RRA
assay title: ChIP-seq
encode release date: 2016-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB026PVO
size range: 200-600

source_name: Homo sapiens gastrocnemius medialis tissue male adult (54 years)

value: Control

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: 54 year

value: Bradley Bernstein, Broad

value: ENCBS693QTT at ENCODE; https://www.encodeproject.org/ENCBS693QTT/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from fibroblast of arm (ENCLB566SOP)

status: Public on Mar 12 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR900AQX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR900AQX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-11-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB566SOP
size range: 200-600
nucleic acid starting quantity: 380.6
nucleic acid starting quantity units: ng

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens fibroblast of arm primary cell male adult (53 years)

tag: antibody

value: fibroblast of arm

value: primary cell

tag: description

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

tag: biosample encode accession

tag: age

value: 53 year

tag: dev stage

value: adult

tag: Sex

value: male

tag: lab

value: Thomas Gingeras, CSHL

tag: link

value: ENCBS367AAA at ENCODE; https://www.encodeproject.org/ENCBS367AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from HepG2 (ENCLB426ZKQ)

description:
https://www.encodeproject.org/experiments/ENCSR959OMS/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR959OMS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB426ZKQ

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-SAP130 fusion protein

tag: line

value: immortalized cell line

value: child

value: 15 year

tag: health state

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS309DCO at ENCODE; https://www.encodeproject.org/ENCBS309DCO/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from PC-3 (ENCLB426JLR)

description:
https://www.encodeproject.org/experiments/ENCSR943LZX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR943LZX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-11-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB426JLR
size range: 300-600
nucleic acid starting quantity: 67.32
nucleic acid starting quantity units: ng
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens PC-3 immortalized cell line

extract_protocol: extraction method: see document

value: prostate cancer cell line

value: 62 year

value: grade IV, adenocarcinoma

tag: passage number

value: Bradley Bernstein, Broad

value: ENCBS451OVM at ENCODE; https://www.encodeproject.org/ENCBS451OVM/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from gastrocnemius medialis (ENCLB395SIR)

description:
https://www.encodeproject.org/experiments/ENCSR897RRA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR897RRA
assay title: ChIP-seq
encode release date: 2016-06-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB395SIR
size range: 200-600

value: Control

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: adult

value: male

value: 54 year

value: ENCBS693QTT at ENCODE; https://www.encodeproject.org/ENCBS693QTT/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from MCF-7 (ENCLB376JLV)

description:
https://www.encodeproject.org/experiments/ENCSR940MHE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on MCF7-human
experiment encode accession: ENCSR940MHE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610GTD, ENCSR511PAE
encode release date: 2016-08-10
lab: Richard Myers, HAIB
library encode accession: ENCLB376JLV

source_name: Homo sapiens MCF-7 immortalized cell line

value: immortalized cell line

value: MCF-7, mammary gland adenocarcinoma

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: Richard Myers, HAIB

value: ENCBS530DHL at ENCODE; https://www.encodeproject.org/ENCBS530DHL/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from induced pluripotent stem cell (ENCLB508EBJ)

description:
https://www.encodeproject.org/experiments/ENCSR908FQA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR908FQA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2016-11-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB508EBJ
size range: 200-600

source_name: Homo sapiens induced pluripotent stem cell line male adult (53 years) derived from fibroblast of arm

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: Thomas Gingeras, CSHL

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from HepG2 (ENCLB990TDM)

description:
https://www.encodeproject.org/experiments/ENCSR938ETG/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR938ETG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB990TDM

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-KLF9 fusion protein, C-terminal FLAG-KLF9 fusion protein

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS408KWQ at ENCODE; https://www.encodeproject.org/ENCBS408KWQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB896AAV)

description:
https://www.encodeproject.org/experiments/ENCSR938ETG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR938ETG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB896AAV

value: Richard Myers, HAIB

value: ENCBS509ZLZ at ENCODE; https://www.encodeproject.org/ENCBS509ZLZ/


title: ChIP-seq from MCF-7 (ENCLB344JCF)

description:
https://www.encodeproject.org/experiments/ENCSR940MHE/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on MCF7-human
experiment encode accession: ENCSR940MHE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610GTD, ENCSR511PAE
encode release date: 2016-08-10
lab: Richard Myers, HAIB
library encode accession: ENCLB344JCF

value: MCF-7, mammary gland adenocarcinoma

value: adult

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS143XXF at ENCODE; https://www.encodeproject.org/ENCBS143XXF/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from ACC112 (ENCLB190ALY)

description:
https://www.encodeproject.org/experiments/ENCSR897FOZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR897FOZ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR836XKP
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB190ALY
size range: 200-600

source_name: Homo sapiens ACC112 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

value: immortalized cell line

value: adenoid cystic carcinoma cell line supplied by Lurdes Queimado, M.D., Ph.D.Phone:405-271-4232 (office); 405-271-4279 (lab); cells immortalized by infection with a retrovirus expressing HPV16 E6 and E7

value: 70 year

value: submaxillar tumor

value: Bradley Bernstein, Broad

value: ENCBS827JIC at ENCODE; https://www.encodeproject.org/ENCBS827JIC/

value: Derived from ENCODE donor ENCDO085ZKK; https://www.encodeproject.org/ENCDO085ZKK/

value: ENCODE dbxrefs Cellosaurus CVCL_Y492; http://web.expasy.org/cellosaurus/CVCL_Y492


title: ChIP-seq from body of pancreas (ENCLB250SXQ)

description:
https://www.encodeproject.org/experiments/ENCSR888RBQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR888RBQ
assay title: ChIP-seq
encode release date: 2016-05-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB250SXQ
size range: 200-600

source_name: Homo sapiens body of pancreas tissue male adult (37 years)

value: Control

value: body of pancreas

value: tissue

value: male

value: 37 year

value: ENCBS869MHP at ENCODE; https://www.encodeproject.org/ENCBS869MHP/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from ACC112 (ENCLB667AMS)

description:
https://www.encodeproject.org/experiments/ENCSR897FOZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR897FOZ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR836XKP
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB667AMS
size range: 200-600

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/eaafee87-23f3-4bb4-adb1-585af01db120/@@download/attachment/ChIP%20New%20General%20ChIP%20Protocol%20041510%20v05.pdf

value: adult

value: ENCBS726UUU at ENCODE; https://www.encodeproject.org/ENCBS726UUU/


title: ChIP-seq from induced pluripotent stem cell (ENCLB429BWA)

description:
https://www.encodeproject.org/experiments/ENCSR932ZMX/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on PGP1 iPSC
experiment encode accession: ENCSR932ZMX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR447FVP, ENCSR655HDE
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB429BWA

value: CTCF

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: Thomas Gingeras, CSHL

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from liver (ENCLB236NVK)

description:
https://www.encodeproject.org/experiments/ENCSR931XLP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on STL011-human (fragmentation date: 2015-01-29)
experiment encode accession: ENCSR931XLP
assay title: ChIP-seq
encode release date: 2016-01-29
lab: Richard Myers, HAIB
library encode accession: ENCLB236NVK

source_name: Homo sapiens liver tissue male adult (32 years)

value: Control

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: healthy with non-obstructive CAD (coronary artery disease)

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from induced pluripotent stem cell (ENCLB869CAM)

description:
https://www.encodeproject.org/experiments/ENCSR932ZMX/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on PGP1 iPSC
experiment encode accession: ENCSR932ZMX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR447FVP, ENCSR655HDE
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB869CAM

value: CTCF

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: adult

value: male

value: ENCBS373AAA at ENCODE; https://www.encodeproject.org/ENCBS373AAA/


title: TkHE4

status: Public on Mar 14 2017

city: Cincinnati

first: Rebekah

last: Karns

state: OH

address: 3333 Burnet Ave

department: Gastroenterology, Hepatology, & Nutrition

institute: Cincinnati Children's Hospital Medical Center

description: Human hepatic-specified endoderm iPSC

library_source: transcriptomic

data_processing:
Following removal of primers and barcodes, raw reads were aligned to the human genome Hg19 using TopHat (version 2.0.13), using transcripts provided by UCSC and Ensembl.
Transcript abundances were measured in FPKM, which were normalized to the median of all samples.
Genome_build: Hg19
Supplementary_files_format_and_content: [.txt] files with gene symbol and FPKM

molecule: total RNA

source_name: Hepatic endoderm

growth_protocol: iPSC cell–derived hepatic endoderm cells were routinely generated by endoderm differentiation cultures (activin and Wnt3a in B27 supplemented RPMI medium for 6 days and KO serum and DMSO in KO media for 3 days) on matrigel coated plastic. MSC and HUVEC are cultured separately in their specifc culture media, supplied by Lonza.  Hepatic specified iPSC were dissociated with Accutase and re-plated on Matrigel after mixed with dissociated MSC and HUVEC. The liver organoids were harvested at day 0, 2,4,6 of co-culture with 50% of Hepatic Growth Medium (Lonza) and 50% of EGM Endothelial cell Growth Medium, (Lonza), supplemented with Dexamethasone, FBS, HGF and Oncostatin M.

extract_protocol:
RNA was harvested using Trizol reagent. miRNAesy kit was used with 1 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: cell population

value: Hepatic-specified endoderm iPSC

tag: time


title: ChIP-seq from HepG2 (ENCLB600ZOL)

description:
https://www.encodeproject.org/experiments/ENCSR925QAW/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR925QAW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB600ZOL

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-HMG20B_isoform2 fusion protein, N-terminal FLAG-HMG20B_isoform2 fusion protein

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS094XDV at ENCODE; https://www.encodeproject.org/ENCBS094XDV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB030SDF)

description:
https://www.encodeproject.org/experiments/ENCSR925QAW/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR925QAW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB030SDF

value: ENCBS071XAT at ENCODE; https://www.encodeproject.org/ENCBS071XAT/


title: ChIP-seq from HepG2 (ENCLB919PEG)

description:
https://www.encodeproject.org/experiments/ENCSR945JOR/
***************
biological replicate number: 7
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human HepG2 (fragmentation date 04-29-13)
experiment encode accession: ENCSR945JOR
assay title: ChIP-seq
encode release date: 2016-01-08
lab: Richard Myers, HAIB
library encode accession: ENCLB919PEG
size range: 100-500

source_name: Homo sapiens HepG2 immortalized cell line

value: Control

value: HepG2, hepatocellular carcinoma

value: ENCBS775NGD at ENCODE; https://www.encodeproject.org/ENCBS775NGD/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from hepatocyte (ENCLB069JYS)

description:
https://www.encodeproject.org/experiments/ENCSR883XRM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR883XRM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB069JYS
size range: 200-600

source_name: Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from HepG2 (ENCLB989KKE)

description:
https://www.encodeproject.org/experiments/ENCSR925BFV/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR925BFV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB989KKE

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-GATAD2A fusion protein, C-terminal FLAG-GATAD2A fusion protein

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS403SNA at ENCODE; https://www.encodeproject.org/ENCBS403SNA/


title: ChIP-seq from hepatocyte (ENCLB174ASM)

description:
https://www.encodeproject.org/experiments/ENCSR883XRM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR883XRM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB174ASM
size range: 200-600

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/


title: ChIP-seq from HepG2 (ENCLB906EMS)

description:
https://www.encodeproject.org/experiments/ENCSR925BFV/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR925BFV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB906EMS

value: ENCBS744NEQ at ENCODE; https://www.encodeproject.org/ENCBS744NEQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from Peyer's patch (ENCLB119KKJ)

description:
https://www.encodeproject.org/experiments/ENCSR878KIY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR878KIY
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR124GAS
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB119KKJ
size range: 200-600

source_name: Homo sapiens Peyer's patch tissue female adult (53 years)

value: Peyer's patch

value: tissue

value: EnTEX:Small Intestine - Terminal Ileum

value: adult

value: 53 year

value: Bradley Bernstein, Broad

value: ENCBS766ILR at ENCODE; https://www.encodeproject.org/ENCBS766ILR/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from PC-3 (ENCLB711MXO)

description:
https://www.encodeproject.org/experiments/ENCSR881TWJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR881TWJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB711MXO
size range: 300-600
nucleic acid starting quantity: 48.96
nucleic acid starting quantity units: ng

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

value: immortalized cell line

value: prostate cancer cell line

value: 62 year

value: grade IV, adenocarcinoma

value: ENCBS596CTT at ENCODE; https://www.encodeproject.org/ENCBS596CTT/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from MCF-7 (ENCLB162ZYB)

description:
https://www.encodeproject.org/experiments/ENCSR924PBF/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on MCF7-human (fragmentation date:2015-03-26
experiment encode accession: ENCSR924PBF
assay title: ChIP-seq
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB162ZYB

source_name: Homo sapiens MCF-7 immortalized cell line stably expressing C-terminal FLAG-RAD21 fusion protein

value: Control

value: female

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS974BZV at ENCODE; https://www.encodeproject.org/ENCBS974BZV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from mid-neurogenesis radial glial cells (ENCLB894KQP)

description:
https://www.encodeproject.org/experiments/ENCSR922CAT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR922CAT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR287XMW
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB894KQP
size range: 300-1000

source_name: Homo sapiens mid-neurogenesis radial glial in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein

value: mid-neurogenesis radial glial cells

value: in vitro differentiated cells

value: Mid neurogenesis radial glial cells were collected at day 35 of differentiation (see protocol)

value: embryonic

value: 5 day

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS741FXQ at ENCODE; https://www.encodeproject.org/ENCBS741FXQ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from liver (ENCLB531GUI)

description:
https://www.encodeproject.org/experiments/ENCSR917QNE/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on RAD21-human
experiment encode accession: ENCSR917QNE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR931XLP, ENCSR621CSR
encode release date: 2016-10-12
lab: Richard Myers, HAIB
library encode accession: ENCLB531GUI

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from Peyer's patch (ENCLB805IMT)

description:
https://www.encodeproject.org/experiments/ENCSR878KIY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR878KIY
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR124GAS
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB805IMT
size range: 200-600

value: Peyer's patch

value: EnTEX:Small Intestine - Terminal Ileum

value: female

value: 53 year

value: ENCBS766ILR at ENCODE; https://www.encodeproject.org/ENCBS766ILR/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from MCF-7 (ENCLB352TFP)

description:
https://www.encodeproject.org/experiments/ENCSR875KOJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR875KOJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB352TFP
size range: 200-600

value: immortalized cell line

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: breast cancer (adenocarcinoma)

value: Bradley Bernstein, Broad

value: ENCBS967MVZ at ENCODE; https://www.encodeproject.org/ENCBS967MVZ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from PC-9 (ENCLB940NTO)

description:
https://www.encodeproject.org/experiments/ENCSR913MGR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR913MGR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB940NTO
size range: 200-600

source_name: Homo sapiens PC-9 immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from MCF-7 (ENCLB980HCX)

description:
https://www.encodeproject.org/experiments/ENCSR875KOJ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR875KOJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB980HCX
size range: 200-600

value: adult

value: female

value: ENCBS789UPK at ENCODE; https://www.encodeproject.org/ENCBS789UPK/


title: ChIP-seq from OCI-LY1 (ENCLB677RRU)

description:
https://www.encodeproject.org/experiments/ENCSR874HSH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR874HSH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB677RRU
size range: 200-600

source_name: Homo sapiens OCI-LY1 immortalized cell line

value: immortalized cell line

value: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983

value: 44 year

value: male

value: B cell lymphoma

value: ENCBS729LWO at ENCODE; https://www.encodeproject.org/ENCBS729LWO/

value: Derived from ENCODE donor ENCDO350AAA; https://www.encodeproject.org/ENCDO350AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1879; http://web.expasy.org/cellosaurus/CVCL_1879


title: ChIP-seq from body of pancreas (ENCLB719YEC)

description:
https://www.encodeproject.org/experiments/ENCSR876DCP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR876DCP
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-07-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB719YEC
size range: 200-600
nucleic acid starting quantity: 202
nucleic acid starting quantity units: ng

value: body of pancreas

value: tissue

value: 37 year

value: Bradley Bernstein, Broad

value: ENCBS869MHP at ENCODE; https://www.encodeproject.org/ENCBS869MHP/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from liver (ENCLB486MDZ)

description:
https://www.encodeproject.org/experiments/ENCSR917QNE/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on RAD21-human
experiment encode accession: ENCSR917QNE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR931XLP, ENCSR621CSR
encode release date: 2016-10-12
lab: Richard Myers, HAIB
library encode accession: ENCLB486MDZ

value: liver

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from Loucy (ENCLB188HGX)

description:
https://www.encodeproject.org/experiments/ENCSR884QDT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR884QDT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB188HGX
size range: 200-600

source_name: Homo sapiens Loucy immortalized cell line

value: Loucy

value: immortalized cell line

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: female

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS170DPY at ENCODE; https://www.encodeproject.org/ENCBS170DPY/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from OCI-LY1 (ENCLB947BTQ)

description:
https://www.encodeproject.org/experiments/ENCSR874HSH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR874HSH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB947BTQ
size range: 200-600

value: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983

value: 44 year

value: male

value: B cell lymphoma

value: Bradley Bernstein, Broad

value: ENCBS729LWO at ENCODE; https://www.encodeproject.org/ENCBS729LWO/

value: Derived from ENCODE donor ENCDO350AAA; https://www.encodeproject.org/ENCDO350AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1879; http://web.expasy.org/cellosaurus/CVCL_1879


title: ChIP-seq from HepG2 (ENCLB397AVJ)

description:
https://www.encodeproject.org/experiments/ENCSR909GJR/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR909GJR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB397AVJ

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-MXD3_isoform1 fusion protein, C-terminal FLAG-MXD3_isoform1 fusion protein

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS160GGD at ENCODE; https://www.encodeproject.org/ENCBS160GGD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from neural cell (ENCLB829OKS)

description:
https://www.encodeproject.org/experiments/ENCSR873EIA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR873EIA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB829OKS
size range: 200-600

source_name: Homo sapiens neural in vitro differentiated cells male embryo

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: unknown

value: healthy

value: ENCBS737HIZ at ENCODE; https://www.encodeproject.org/ENCBS737HIZ/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from OCI-LY1 (ENCLB653TBE)

description:
https://www.encodeproject.org/experiments/ENCSR874HSH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR874HSH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB653TBE
size range: 200-600

value: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983

value: 44 year

value: adult

value: male

value: B cell lymphoma

value: Bradley Bernstein, Broad

value: ENCBS899DSB at ENCODE; https://www.encodeproject.org/ENCBS899DSB/


title: ChIP-seq from HepG2 (ENCLB256CCC)

description:
https://www.encodeproject.org/experiments/ENCSR903ELW/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR903ELW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR237LVA, ENCSR524VNV
encode release date: 2016-08-24
lab: Richard Myers, HAIB
library encode accession: ENCLB256CCC

value: CREM

value: immortalized cell line

value: HepG2, hepatocellular carcinoma

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from body of pancreas (ENCLB001WXF)

description:
https://www.encodeproject.org/experiments/ENCSR876DCP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR876DCP
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-07-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB001WXF
size range: 200-600
nucleic acid starting quantity: 202
nucleic acid starting quantity units: ng

value: body of pancreas

value: tissue

value: 37 year

value: ENCBS869MHP at ENCODE; https://www.encodeproject.org/ENCBS869MHP/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from neural cell (ENCLB157SXI)

description:
https://www.encodeproject.org/experiments/ENCSR873EIA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR873EIA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB157SXI
size range: 200-600

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: male

value: unknown

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS504GFW at ENCODE; https://www.encodeproject.org/ENCBS504GFW/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from gastroesophageal sphincter (ENCLB263UHE)

description:
https://www.encodeproject.org/experiments/ENCSR872WVR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR872WVR
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR178MWD
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB263UHE
size range: 200-600

source_name: Homo sapiens gastroesophageal sphincter tissue female adult (53 years)

value: gastroesophageal sphincter

value: EnTEX:Esophagus - Gastroesophageal Junction

value: adult

value: female

value: 53 year

value: ENCBS783BYN at ENCODE; https://www.encodeproject.org/ENCBS783BYN/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from SK-N-SH (ENCLB546CPR)

description:
https://www.encodeproject.org/experiments/ENCSR878HPJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR878HPJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB546CPR
size range: 200-600

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: immortalized cell line

value: 4 year

value: child

value: ENCBS324TZB at ENCODE; https://www.encodeproject.org/ENCBS324TZB/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from Loucy (ENCLB251QDF)

description:
https://www.encodeproject.org/experiments/ENCSR900HAP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR900HAP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2016-10-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB251QDF
size range: 200-600

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/61c0d277-54c3-4e17-afcd-4059b22d89f6/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v09.1.pdf

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: Bradley Bernstein, Broad

value: ENCBS708EFA at ENCODE; https://www.encodeproject.org/ENCBS708EFA/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from MM.1S (ENCLB584KAC)

description:
https://www.encodeproject.org/experiments/ENCSR872PRJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR872PRJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-06-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB584KAC
size range: 300-600
nucleic acid starting quantity: 16.728
nucleic acid starting quantity units: ng

source_name: Homo sapiens MM.1S immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS241TLI at ENCODE; https://www.encodeproject.org/ENCBS241TLI/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from SK-N-MC (ENCLB519PJY)

description:
https://www.encodeproject.org/experiments/ENCSR899XXQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
experiment encode accession: ENCSR899XXQ
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB519PJY
size range: 200-600

source_name: Homo sapiens SK-N-MC immortalized cell line

value: Control

value: SK-N-MC

value: immortalized cell line

value: Please note:This cell line was previously described as a neuroepithelioma (ATCC HTB-10).  However recent evidence reveals it is Ewing's Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999, http://www.ncbi.nlm.nih.gov/pubmed/25453903).

value: child

value: 14 year

value: Ewing's sarcoma

value: ENCBS556HGY at ENCODE; https://www.encodeproject.org/ENCBS556HGY/

value: Derived from ENCODE donor ENCDO000ABC; https://www.encodeproject.org/ENCDO000ABC/

value: ENCODE dbxrefs Cellosaurus CVCL_0530; http://web.expasy.org/cellosaurus/CVCL_0530


title: ChIP-seq from gastroesophageal sphincter (ENCLB728AVL)

description:
https://www.encodeproject.org/experiments/ENCSR872WVR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR872WVR
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR178MWD
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB728AVL
size range: 200-600

value: gastroesophageal sphincter

value: tissue

value: EnTEX:Esophagus - Gastroesophageal Junction

value: adult

value: 53 year

value: Bradley Bernstein, Broad

value: ENCBS783BYN at ENCODE; https://www.encodeproject.org/ENCBS783BYN/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from MM.1S (ENCLB011VJK)

description:
https://www.encodeproject.org/experiments/ENCSR872PRJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR872PRJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-06-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB011VJK
size range: 300-600
nucleic acid starting quantity: 8.874
nucleic acid starting quantity units: ng

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS981ZAE at ENCODE; https://www.encodeproject.org/ENCBS981ZAE/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from H9 (ENCLB540MMT)

description:
https://www.encodeproject.org/experiments/ENCSR870IUC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR870IUC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR625CEM
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB540MMT
size range: 200-600
nucleic acid starting quantity: 133
nucleic acid starting quantity units: ng

source_name: Homo sapiens H9 stem cell female embryo (5 days) stably expressing C-terminal eGFP-HES5 fusion protein

value: stem cell

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter

value: embryonic

value: 5 day

value: healthy

value: ENCBS769EPD at ENCODE; https://www.encodeproject.org/ENCBS769EPD/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_9773; http://web.expasy.org/cellosaurus/CVCL_9773


title: ChIP-seq from Karpas-422 (ENCLB581EFZ)

description:
https://www.encodeproject.org/experiments/ENCSR870IGD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR870IGD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR367UDO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB581EFZ
size range: 200-600

source_name: Homo sapiens Karpas-422 immortalized cell line

value: immortalized cell line

value: Karpas422- Human B cell non-Hodgkin lymphoma

value: 73 year

value: adult

value: human B cell non-Hodgkin's lymphoma

value: Bradley Bernstein, Broad

value: ENCBS301UOD at ENCODE; https://www.encodeproject.org/ENCBS301UOD/

value: Derived from ENCODE donor ENCDO354AAA; https://www.encodeproject.org/ENCDO354AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1325; http://web.expasy.org/cellosaurus/CVCL_1325


title: ChIP-seq from HepG2 (ENCLB411XFS)

description:
https://www.encodeproject.org/experiments/ENCSR909GJR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR909GJR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB411XFS

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS958FYV at ENCODE; https://www.encodeproject.org/ENCBS958FYV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from GM12878 (ENCLB760IFH)

description:
https://www.encodeproject.org/experiments/ENCSR897MMC/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on GM12878
experiment encode accession: ENCSR897MMC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR136WQZ, ENCSR890ZMI
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB760IFH

source_name: Homo sapiens GM12878 immortalized cell line

value: JUNB

value: GM12878, B-lymphocyte, lymphoblastoid

value: unknown

value: female

value: ENCBS057BBL at ENCODE; https://www.encodeproject.org/ENCBS057BBL/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM12878&Product=CC


title: ChIP-seq from HepG2 (ENCLB256PEC)

description:
https://www.encodeproject.org/experiments/ENCSR903ELW/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR903ELW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR237LVA, ENCSR524VNV
encode release date: 2016-08-24
lab: Richard Myers, HAIB
library encode accession: ENCLB256PEC

source_name: Homo sapiens HepG2 immortalized cell line

value: CREM

value: immortalized cell line

value: A standard Myers lab growth of HepG2, hepatocellular carcinoma

value: ENCBS515IJA at ENCODE; https://www.encodeproject.org/ENCBS515IJA/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB556AAO)

description:
https://www.encodeproject.org/experiments/ENCSR896JFO/
***************
biological replicate number: 5
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human K562 (fragmentation date 04-08-13)
experiment encode accession: ENCSR896JFO
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB556AAO

source_name: Homo sapiens K562 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

value: Control

value: K562, myelogenous leukemia

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS600AAA at ENCODE; https://www.encodeproject.org/ENCBS600AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from cardiac muscle cell (ENCLB583PWG)

description:
https://www.encodeproject.org/experiments/ENCSR867SJE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR867SJE
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB583PWG
size range: 200-600

source_name: Homo sapiens cardiac muscle in vitro differentiated cells fetal

value: cardiac muscle cell

value: in vitro differentiated cells

value: unknown

value: fetal

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS806KLM at ENCODE; https://www.encodeproject.org/ENCBS806KLM/

value: Derived from ENCODE donor ENCDO924HBJ; https://www.encodeproject.org/ENCDO924HBJ/


title: ChIP-seq from cardiac muscle cell (ENCLB142HEK)

description:
https://www.encodeproject.org/experiments/ENCSR867SJE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR867SJE
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB142HEK
size range: 200-600

value: Control

value: ENCBS343AKO at ENCODE; https://www.encodeproject.org/ENCBS343AKO/


title: ChIP-seq from GM12878 (ENCLB349BSG)

description:
https://www.encodeproject.org/experiments/ENCSR890ZMI/
***************
biological replicate number: 11
technical replicate number: 2
description: Reverse Crosslink Control ChIP-seq on human GM12878 (fragmentation date 02-19-14)
experiment encode accession: ENCSR890ZMI
assay title: ChIP-seq
encode release date: 2016-01-08
lab: Richard Myers, HAIB
library encode accession: ENCLB349BSG
size range: 100-500

value: immortalized cell line

value: GM12878, B-lymphocyte, lymphoblastoid.

value: adult

value: female

value: ENCBS083XJQ at ENCODE; https://www.encodeproject.org/ENCBS083XJQ/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM12878&Product=CC


title: ChIP-seq from SUDHL6 (ENCLB842WJP)

description:
https://www.encodeproject.org/experiments/ENCSR869HJR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR869HJR
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB842WJP
size range: 200-600

source_name: Homo sapiens SUDHL6 immortalized cell line

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: 43 year

value: male

value: Bradley Bernstein, Broad

value: ENCBS136LHJ at ENCODE; https://www.encodeproject.org/ENCBS136LHJ/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: ChIP-seq from GM12878 (ENCLB360KFC)

description:
https://www.encodeproject.org/experiments/ENCSR897MMC/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on GM12878
experiment encode accession: ENCSR897MMC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR136WQZ, ENCSR890ZMI
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB360KFC

value: JUNB

value: unknown

value: Richard Myers, HAIB


title: ChIP-seq from liver (ENCLB542TCA)

description:
https://www.encodeproject.org/experiments/ENCSR904IXG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on STL011-human (fragmentation date: 2015-01-29)
experiment encode accession: ENCSR904IXG
assay title: ChIP-seq
encode release date: 2016-01-29
lab: Richard Myers, HAIB
library encode accession: ENCLB542TCA

source_name: Homo sapiens liver tissue female child (4 years)

value: Control

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: healthy

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from cardiac muscle cell (ENCLB661XGX)

description:
https://www.encodeproject.org/experiments/ENCSR864LRY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR864LRY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR867SJE
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB661XGX
size range: 200-600

value: cardiac muscle cell

value: in vitro differentiated cells

value: fetal

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS343AKO at ENCODE; https://www.encodeproject.org/ENCBS343AKO/

value: Derived from ENCODE donor ENCDO924HBJ; https://www.encodeproject.org/ENCDO924HBJ/


title: ChIP-seq from neuroepithelial stem cell (ENCLB248HAC)

description:
https://www.encodeproject.org/experiments/ENCSR890NXD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR890NXD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR803UDX
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB248HAC
size range: 300-1000

source_name: Homo sapiens neuroepithelial stem in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein

value: neuroepithelial stem cell

value: Neuroepithelial cells were collected at day 12 of differentiation (see protocol)

value: embryonic

value: female

value: 5 day

value: Bradley Bernstein, Broad

value: ENCBS363SWF at ENCODE; https://www.encodeproject.org/ENCBS363SWF/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from neuroepithelial stem cell (ENCLB823HNC)

description:
https://www.encodeproject.org/experiments/ENCSR890NXD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR890NXD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR803UDX
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB823HNC
size range: 200-600

value: healthy

value: ENCBS435FHS at ENCODE; https://www.encodeproject.org/ENCBS435FHS/


title: ChIP-seq from cardiac muscle cell (ENCLB519DJQ)

description:
https://www.encodeproject.org/experiments/ENCSR864LRY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR864LRY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR867SJE
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB519DJQ
size range: 200-600

value: cardiac muscle cell

value: unknown

value: ENCBS806KLM at ENCODE; https://www.encodeproject.org/ENCBS806KLM/


title: ChIP-seq from bipolar spindle neuron (ENCLB200SJT)

description:
https://www.encodeproject.org/experiments/ENCSR889GGV/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on biopolar spindle neuron
experiment encode accession: ENCSR889GGV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR170WVI, ENCSR138PGW
encode release date: 2016-10-12
lab: Richard Myers, HAIB
library encode accession: ENCLB200SJT

source_name: Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from adrenal gland (ENCLB029CKM)

description:
https://www.encodeproject.org/experiments/ENCSR857XRG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR857XRG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR828HXJ
encode release date: 2017-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB029CKM
size range: 200-600

source_name: Homo sapiens adrenal gland tissue male adult (54 years)

extract_protocol: not provided

value: adrenal gland

value: tissue

value: EnTEX:Adrenal Gland

value: 54 year

value: Bradley Bernstein, Broad

value: ENCBS078MQQ at ENCODE; https://www.encodeproject.org/ENCBS078MQQ/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from bipolar spindle neuron (ENCLB710IDL)

description:
https://www.encodeproject.org/experiments/ENCSR889GGV/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on biopolar spindle neuron
experiment encode accession: ENCSR889GGV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR170WVI, ENCSR138PGW
encode release date: 2016-10-12
lab: Richard Myers, HAIB
library encode accession: ENCLB710IDL


title: ChIP-seq from Loucy (ENCLB959HTK)

description:
https://www.encodeproject.org/experiments/ENCSR884QDT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR884QDT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB959HTK
size range: 200-600

source_name: Homo sapiens Loucy immortalized cell line

value: Loucy

value: immortalized cell line

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: female

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from hepatocyte (ENCLB244XFF)

description:
https://www.encodeproject.org/experiments/ENCSR850ODD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR850ODD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-11-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB244XFF
size range: 200-600

source_name: Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: healthy

value: Richard Myers, HAIB

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from hepatocyte (ENCLB593CVN)

description:
https://www.encodeproject.org/experiments/ENCSR850ODD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR850ODD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-11-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB593CVN
size range: 200-600

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/


title: ChIP-seq from HepG2 (ENCLB629FFQ)

description:
https://www.encodeproject.org/experiments/ENCSR882VRP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2-human (fragmentation date:2015-02-14
experiment encode accession: ENCSR882VRP
assay title: ChIP-seq
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB629FFQ

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ATF1 fusion protein

value: Control

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS051IBT at ENCODE; https://www.encodeproject.org/ENCBS051IBT/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from Loucy (ENCLB324MVF)

description:
https://www.encodeproject.org/experiments/ENCSR900HAP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR900HAP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2016-10-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB324MVF
size range: 200-600

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: female

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: Bradley Bernstein, Broad

value: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from bipolar spindle neuron (ENCLB591XQH)

description:
https://www.encodeproject.org/experiments/ENCSR849YFO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR849YFO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-05-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB591XQH
size range: 200-600

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: male

value: Thomas Gingeras, CSHL

value: ENCBS374AAA at ENCODE; https://www.encodeproject.org/ENCBS374AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from KOPT-K1 (ENCLB856ENV)

description:
https://www.encodeproject.org/experiments/ENCSR879WTY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR879WTY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255BOF
encode release date: 2017-01-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB856ENV
size range: 200-600

source_name: Homo sapiens KOPT-K1 immortalized cell line

value: immortalized cell line

value: cells from Birgit; a human T-ALL cell line with a chromosome translocation breakpoint at t(11;14)(p13;q11) affecting the putative oncoprotein

value: unknown

value: not collected

value: ENCBS345YKN at ENCODE; https://www.encodeproject.org/ENCBS345YKN/

value: Derived from ENCODE donor ENCDO568LPD; https://www.encodeproject.org/ENCDO568LPD/

value: ENCODE dbxrefs Cellosaurus CVCL_4965; http://web.expasy.org/cellosaurus/CVCL_4965


title: ChIP-seq from bipolar spindle neuron (ENCLB952SEO)

description:
https://www.encodeproject.org/experiments/ENCSR849YFO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR849YFO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-05-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB952SEO
size range: 200-600

value: adult

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/


title: ChIP-seq from PC-3 (ENCLB833SNG)

description:
https://www.encodeproject.org/experiments/ENCSR849APH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR849APH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB833SNG
size range: 300-600
nucleic acid starting quantity: 146.2
nucleic acid starting quantity units: ng

source_name: Homo sapiens PC-3 immortalized cell line

value: prostate cancer cell line

value: 62 year

value: grade IV, adenocarcinoma

value: Bradley Bernstein, Broad

value: ENCBS596CTT at ENCODE; https://www.encodeproject.org/ENCBS596CTT/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from MCF-7 (ENCLB892XMR)

description:
https://www.encodeproject.org/experiments/ENCSR876UYH/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on MCF7
experiment encode accession: ENCSR876UYH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610GTD, ENCSR838ZOW
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB892XMR

source_name: Homo sapiens MCF-7 immortalized cell line

value: immortalized cell line

value: MCF-7, mammary gland adenocarcinoma

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: Richard Myers, HAIB

value: ENCBS143XXF at ENCODE; https://www.encodeproject.org/ENCBS143XXF/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from MCF-7 (ENCLB909XLV)

description:
https://www.encodeproject.org/experiments/ENCSR876UYH/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on MCF7
experiment encode accession: ENCSR876UYH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610GTD, ENCSR838ZOW
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB909XLV

value: A standard Myers lab growth of MCF-7, mammary gland adenocarcinoma

value: adult

value: ENCBS546VBU at ENCODE; https://www.encodeproject.org/ENCBS546VBU/


title: ChIP-seq from MCF-7 (ENCLB804UYC)

description:
https://www.encodeproject.org/experiments/ENCSR875KOJ/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR875KOJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB804UYC
size range: 200-600
nucleic acid starting quantity: 202.62
nucleic acid starting quantity units: ng

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: Bradley Bernstein, Broad

value: ENCBS967MVZ at ENCODE; https://www.encodeproject.org/ENCBS967MVZ/

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from MCF-7 (ENCLB125APN)

description:
https://www.encodeproject.org/experiments/ENCSR875KOJ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR875KOJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB125APN
size range: 200-600
nucleic acid starting quantity: 259.6
nucleic acid starting quantity units: ng

value: immortalized cell line


title: ChIP-seq from SK-N-SH (ENCLB391NRG)

description:
https://www.encodeproject.org/experiments/ENCSR878HPJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR878HPJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB391NRG
size range: 200-600

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: 4 year

value: child

value: ENCBS500EWH at ENCODE; https://www.encodeproject.org/ENCBS500EWH/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from adrenal gland (ENCLB177PZY)

description:
https://www.encodeproject.org/experiments/ENCSR857XRG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR857XRG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR828HXJ
encode release date: 2017-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB177PZY
size range: 200-600

value: adrenal gland

value: tissue

value: EnTEX:Adrenal Gland

value: male

value: 54 year

value: ENCBS078MQQ at ENCODE; https://www.encodeproject.org/ENCBS078MQQ/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from MCF-7 (ENCLB834MSF)

description:
https://www.encodeproject.org/experiments/ENCSR875KOJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR875KOJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB834MSF
size range: 200-600

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: adult

value: female

value: breast cancer (adenocarcinoma)

value: Bradley Bernstein, Broad

value: ENCBS789UPK at ENCODE; https://www.encodeproject.org/ENCBS789UPK/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from ACC112 (ENCLB169ZDB)

description:
https://www.encodeproject.org/experiments/ENCSR836XKP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR836XKP
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB169ZDB
size range: 200-600

source_name: Homo sapiens ACC112 immortalized cell line

value: Control

value: immortalized cell line

value: adenoid cystic carcinoma cell line supplied by Lurdes Queimado, M.D., Ph.D.Phone:405-271-4232 (office); 405-271-4279 (lab); cells immortalized by infection with a retrovirus expressing HPV16 E6 and E7

value: 70 year

value: submaxillar tumor

value: ENCBS726UUU at ENCODE; https://www.encodeproject.org/ENCBS726UUU/

value: Derived from ENCODE donor ENCDO085ZKK; https://www.encodeproject.org/ENCDO085ZKK/

value: ENCODE dbxrefs Cellosaurus CVCL_Y492; http://web.expasy.org/cellosaurus/CVCL_Y492


title: ChIP-seq from ACC112 (ENCLB078QSR)

description:
https://www.encodeproject.org/experiments/ENCSR836XKP/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR836XKP
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB078QSR
size range: 200-600

value: male

value: ENCBS827JIC at ENCODE; https://www.encodeproject.org/ENCBS827JIC/


title: ChIP-seq from neuroepithelial stem cell (ENCLB588HPA)

description:
https://www.encodeproject.org/experiments/ENCSR842NGQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR842NGQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR803UDX
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB588HPA
size range: 200-600

value: neuroepithelial stem cell

value: in vitro differentiated cells

value: Neuroepithelial cells were collected at day 12 of differentiation (see protocol)

value: embryonic

value: 5 day

value: healthy

value: ENCBS562NPI at ENCODE; https://www.encodeproject.org/ENCBS562NPI/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from ACC112 (ENCLB413RQD)

description:
https://www.encodeproject.org/experiments/ENCSR836XKP/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR836XKP
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB413RQD
size range: 200-600

value: Control

value: immortalized cell line

value: adult

value: Bradley Bernstein, Broad


title: ChIP-seq from KMS-11 (ENCLB758NJS)

description:
https://www.encodeproject.org/experiments/ENCSR847UJW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR847UJW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-11-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB758NJS
size range: 200-600
nucleic acid starting quantity: 41
nucleic acid starting quantity units: ng

source_name: Homo sapiens KMS-11 immortalized cell line

value: multiple myeloma

value: female

value: 67 year

value: ENCBS987CHP at ENCODE; https://www.encodeproject.org/ENCBS987CHP/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from neuroepithelial stem cell (ENCLB523UOL)

description:
https://www.encodeproject.org/experiments/ENCSR842NGQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR842NGQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR803UDX
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB523UOL
size range: 200-600

source_name: Homo sapiens neuroepithelial stem in vitro differentiated cells female embryo (5 days) stably expressing C-terminal eGFP-HES5 fusion protein

value: neuroepithelial stem cell

value: in vitro differentiated cells

value: ENCBS592DOF at ENCODE; https://www.encodeproject.org/ENCBS592DOF/


title: ChIP-seq from Loucy (ENCLB650FNM)

description:
https://www.encodeproject.org/experiments/ENCSR837SUQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR837SUQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB650FNM
size range: 200-600

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS170DPY at ENCODE; https://www.encodeproject.org/ENCBS170DPY/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from SUDHL6 (ENCLB652XPH)

description:
https://www.encodeproject.org/experiments/ENCSR869HJR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR869HJR
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB652XPH
size range: 200-600

value: immortalized cell line

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: 43 year

value: adult

value: male

value: Bradley Bernstein, Broad

value: ENCBS107PVI at ENCODE; https://www.encodeproject.org/ENCBS107PVI/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: ChIP-seq from KMS-11 (ENCLB241KFU)

description:
https://www.encodeproject.org/experiments/ENCSR835YBD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR835YBD
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2017-01-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB241KFU
size range: 200-600
nucleic acid starting quantity: 265
nucleic acid starting quantity units: ng

value: multiple myeloma

value: female

value: 67 year

value: ENCBS987CHP at ENCODE; https://www.encodeproject.org/ENCBS987CHP/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from KMS-11 (ENCLB351BJB)

description:
https://www.encodeproject.org/experiments/ENCSR835YBD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR835YBD
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2017-01-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB351BJB
size range: 200-600
nucleic acid starting quantity: 405
nucleic acid starting quantity units: ng

value: ENCBS682HMC at ENCODE; https://www.encodeproject.org/ENCBS682HMC/


title: ChIP-seq from SK-N-MC (ENCLB280GVZ)

description:
https://www.encodeproject.org/experiments/ENCSR835MMN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against H3K27ac using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
experiment encode accession: ENCSR835MMN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR899XXQ
encode release date: 2016-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB280GVZ
size range: 200-600
nucleic acid starting quantity: 96.25
nucleic acid starting quantity units: ng

source_name: Homo sapiens SK-N-MC immortalized cell line

value: SK-N-MC

value: Please note:This cell line was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999,http://www.ncbi.nlm.nih.gov/pubmed/25453903)

value: child

value: 14 year

value: Ewing's sarcoma

value: ENCBS273LIC at ENCODE; https://www.encodeproject.org/ENCBS273LIC/

value: Derived from ENCODE donor ENCDO000ABC; https://www.encodeproject.org/ENCDO000ABC/


title: ChIP-seq from H9 (ENCLB006TOQ)

description:
https://www.encodeproject.org/experiments/ENCSR870IUC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR870IUC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR625CEM
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB006TOQ
size range: 300-1000

source_name: Homo sapiens H9 stem cell female embryo (5 days) stably expressing C-terminal eGFP-HES5 fusion protein

value: stem cell

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter, Cells were cultured on mitotically inactivated mouse embryonic fibroblasts (MEFs) (Globalstem). Undifferentiated ES cells were maintained in medium containing DMEM/F12, 20% KSR, 1mM Glutamine, 1% Penicillin/Streptomycin, non essential amino acids and beta-mercaptoethanol. Undifferentiated ES cells were purified with pluripotency markers Tra-1-60 and PE-conjugated SSEA-3 (BD Pharmingen).

value: embryonic

value: 5 day

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS703ZDS at ENCODE; https://www.encodeproject.org/ENCBS703ZDS/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_9773; http://web.expasy.org/cellosaurus/CVCL_9773


title: ChIP-seq from KOPT-K1 (ENCLB541VFU)

description:
https://www.encodeproject.org/experiments/ENCSR879WTY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR879WTY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255BOF
encode release date: 2017-01-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB541VFU
size range: 200-600

value: immortalized cell line

value: cells from Birgit; a human T-ALL cell line with a chromosome translocation breakpoint at t(11;14)(p13;q11) affecting the putative oncoprotein

value: unknown

value: not collected

value: ENCBS869LIS at ENCODE; https://www.encodeproject.org/ENCBS869LIS/

value: Derived from ENCODE donor ENCDO568LPD; https://www.encodeproject.org/ENCDO568LPD/

value: ENCODE dbxrefs Cellosaurus CVCL_4965; http://web.expasy.org/cellosaurus/CVCL_4965


title: ChIP-seq from adrenal gland (ENCLB882YGF)

description:
https://www.encodeproject.org/experiments/ENCSR828HXJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR828HXJ
assay title: ChIP-seq
encode release date: 2016-06-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB882YGF
size range: 200-600

value: Control

value: adrenal gland

value: tissue

value: EnTEX:Adrenal Gland

value: adult

value: male

value: 54 year

value: ENCBS912DPA at ENCODE; https://www.encodeproject.org/ENCBS912DPA/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from K562 (ENCLB467WZE)

description:
https://www.encodeproject.org/experiments/ENCSR863KUB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR863KUB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR599SPN, ENCSR000FCA
encode release date: 2016-01-14
lab: Richard Myers, HAIB
library encode accession: ENCLB467WZE

source_name: Homo sapiens K562 immortalized cell line

value: K562, myelogenous leukemia

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS602AAA at ENCODE; https://www.encodeproject.org/ENCBS602AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from PC-3 (ENCLB806AMH)

description:
https://www.encodeproject.org/experiments/ENCSR881TWJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR881TWJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB806AMH
size range: 300-600
nucleic acid starting quantity: 24.548
nucleic acid starting quantity units: ng
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: immortalized cell line

value: prostate cancer cell line

value: 62 year

value: grade IV, adenocarcinoma

value: Bradley Bernstein, Broad

value: ENCBS451OVM at ENCODE; https://www.encodeproject.org/ENCBS451OVM/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from Karpas-422 (ENCLB940YUR)

description:
https://www.encodeproject.org/experiments/ENCSR870IGD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR870IGD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR367UDO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB940YUR
size range: 200-600

source_name: Homo sapiens Karpas-422 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/a47aaf7e-38f5-4326-914a-98991f61345a/@@download/attachment/Alon%27s%20SCN%20revised.pdf

value: Karpas422- Human B cell non-Hodgkin lymphoma

value: 73 year

value: adult

value: female

value: human B cell non-Hodgkin's lymphoma

value: ENCBS850UIV at ENCODE; https://www.encodeproject.org/ENCBS850UIV/

value: Derived from ENCODE donor ENCDO354AAA; https://www.encodeproject.org/ENCDO354AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1325; http://web.expasy.org/cellosaurus/CVCL_1325


title: ChIP-seq from body of pancreas (ENCLB790VUS)

description:
https://www.encodeproject.org/experiments/ENCSR827NKO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR827NKO
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB790VUS
size range: 200-600

source_name: Homo sapiens body of pancreas tissue male adult (37 years)

value: body of pancreas

value: tissue

value: male

value: 37 year

value: ENCBS869MHP at ENCODE; https://www.encodeproject.org/ENCBS869MHP/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from GM12878 (ENCLB717JLD)

description:
https://www.encodeproject.org/experiments/ENCSR860UHK/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on GM12878
experiment encode accession: ENCSR860UHK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR785WMC, ENCSR890ZMI
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB717JLD

source_name: Homo sapiens GM12878 immortalized cell line

value: CBFB

value: immortalized cell line

value: GM12878, B-lymphocyte, lymphoblastoid.

value: unknown

value: Richard Myers, HAIB

value: ENCBS083XJQ at ENCODE; https://www.encodeproject.org/ENCBS083XJQ/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM12878&Product=CC


title: ChIP-seq from body of pancreas (ENCLB928AMF)

description:
https://www.encodeproject.org/experiments/ENCSR827NKO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR827NKO
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB928AMF
size range: 200-600

value: adult

value: Bradley Bernstein, Broad


title: ChIP-seq from GM12878 (ENCLB404WIG)

description:
https://www.encodeproject.org/experiments/ENCSR860UHK/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on GM12878
experiment encode accession: ENCSR860UHK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR785WMC, ENCSR890ZMI
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB404WIG

value: A standard Myers lab growth of GM12878, B-lymphocyte, lymphoblastoid

value: female

value: ENCBS232JAP at ENCODE; https://www.encodeproject.org/ENCBS232JAP/


title: ChIP-seq from neutrophil (ENCLB302OUX)

description:
https://www.encodeproject.org/experiments/ENCSR826VJY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR826VJY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR557RDB
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB302OUX
size range: 200-600

source_name: Homo sapiens neutrophil primary cell

value: neutrophil

value: primary cell

value: Neutrophils were isolated by centrifuging heparinized venous blood over Histopaque 1119 (Sigma-Aldrich) and subsequently over a discontinuous Percoll (Amersham Biosciences) gradient.  Cells provided by Max Planck Institute for Infection Biology, Berlin

value: not collected

value: ENCBS360EQL at ENCODE; https://www.encodeproject.org/ENCBS360EQL/

value: Derived from ENCODE donor ENCDO055UKA; https://www.encodeproject.org/ENCDO055UKA/


title: ChIP-seq from neutrophil (ENCLB181XXV)

description:
https://www.encodeproject.org/experiments/ENCSR826VJY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR826VJY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR557RDB
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB181XXV
size range: 200-600

value: unknown

value: ENCBS462VZJ at ENCODE; https://www.encodeproject.org/ENCBS462VZJ/


title: ChIP-seq from PC-3 (ENCLB714CJJ)

description:
https://www.encodeproject.org/experiments/ENCSR826UTD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR826UTD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB714CJJ
size range: 300-600
nucleic acid starting quantity: 33.048
nucleic acid starting quantity units: ng

value: immortalized cell line

value: prostate cancer cell line

value: male

value: 62 year

value: grade IV, adenocarcinoma

value: ENCBS596CTT at ENCODE; https://www.encodeproject.org/ENCBS596CTT/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from HepG2 (ENCLB944OZS)

description:
https://www.encodeproject.org/experiments/ENCSR855LCA/
***************
biological replicate number: 9
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human HepG2 (fragmentation date 12-15-13)
experiment encode accession: ENCSR855LCA
assay title: ChIP-seq
encode release date: 2014-04-04
lab: Richard Myers, HAIB
library encode accession: ENCLB944OZS

source_name: Homo sapiens HepG2 immortalized cell line

value: Control

value: HepG2, hepatocellular carcinoma

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS250DDC at ENCODE; https://www.encodeproject.org/ENCBS250DDC/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB154AII)

description:
https://www.encodeproject.org/experiments/ENCSR853ADA/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR853ADA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR237LVA, ENCSR381PHD
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB154AII

value: immortalized cell line

value: A standard Myers lab growth of HepG2, hepatocellular carcinoma

value: male

value: ENCBS515IJA at ENCODE; https://www.encodeproject.org/ENCBS515IJA/


title: ChIP-seq from HepG2 (ENCLB122HQR)

description:
https://www.encodeproject.org/experiments/ENCSR853ADA/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR853ADA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR237LVA, ENCSR381PHD
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB122HQR

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/