title: ChIP-seq from K562 (ENCLB385HFC)

description:
https://www.encodeproject.org/experiments/ENCSR635GTR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TEAD2 ChIP-seq on human K562
experiment encode accession: ENCSR635GTR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR256DQC
encode release date: 2016-03-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB385HFC
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-TEAD2 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TEAD2

value: 53 year

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: ENCBS528ZIT at ENCODE; https://www.encodeproject.org/ENCBS528ZIT/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW45; http://web.expasy.org/cellosaurus/CVCL_AW45


title: ChIP-seq from GM12878 (ENCLB743MHF)

status: Public on Jan 04 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR874AFU/
***************
biological replicate number: 1
technical replicate number: 1
description: IKZF1 ChIP-seq on human GM12878
experiment encode accession: ENCSR874AFU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB743MHF
size range: 450-650

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens GM12878 immortalized cell line

tag: antibody

tag: line

value: immortalized cell line

tag: biosample encode accession

tag: dev stage

value: adult

tag: Sex

tag: age

value: unknown

tag: health state

tag: lab

value: Michael Snyder, Stanford

tag: link

value: ENCBS339VHO at ENCODE; https://www.encodeproject.org/ENCBS339VHO/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from K562 (ENCLB047LXS)

description:
https://www.encodeproject.org/experiments/ENCSR635GTR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TEAD2 ChIP-seq on human K562
experiment encode accession: ENCSR635GTR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR256DQC
encode release date: 2016-03-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB047LXS
size range: 450-650

tag: description

tag: passage number

value: ENCBS723GLY at ENCODE; https://www.encodeproject.org/ENCBS723GLY/


title: ChIP-seq from HEK293T (ENCLB596HYQ)

description:
https://www.encodeproject.org/experiments/ENCSR872BOU/
***************
biological replicate number: 2
technical replicate number: 1
description: FOXK2 ChIP-seq on human HEK293T
experiment encode accession: ENCSR872BOU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR272LXW
encode release date: 2016-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB596HYQ
size range: 450-650

source_name: Homo sapiens HEK293T immortalized cell line

value: embryonic

value: ENCBS276VDW at ENCODE; https://www.encodeproject.org/ENCBS276VDW/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from A549 (ENCLB771NWT)

description:
https://www.encodeproject.org/experiments/ENCSR638QYO/
***************
biological replicate number: 2
technical replicate number: 1
description: SREBF2 ChIP-seq on human A549
experiment encode accession: ENCSR638QYO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB771NWT
size range: 450-650

source_name: Homo sapiens A549 immortalized cell line

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: 58 year

value: male

value: ENCBS611JSC at ENCODE; https://www.encodeproject.org/ENCBS611JSC/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from HeLa-S3 (ENCLB262IWG)

description:
https://www.encodeproject.org/experiments/ENCSR634ZGP/
***************
biological replicate number: 1
technical replicate number: 1
description: UBTF ChIP-seq on human HeLa-S3
experiment encode accession: ENCSR634ZGP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR760PBD
encode release date: 2016-07-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB262IWG
size range: 450-650

source_name: Homo sapiens HeLa-S3 immortalized cell line

value: UBTF

value: immortalized cell line

value: Cervical adenocarcinoma

value: adult

value: female

value: 31 year

value: cervical adenocarcinoma

value: ENCBS352IHZ at ENCODE; https://www.encodeproject.org/ENCBS352IHZ/

value: Derived from ENCODE donor ENCDO000AAB; https://www.encodeproject.org/ENCDO000AAB/

value: ENCODE dbxrefs Cellosaurus CVCL_0058; http://web.expasy.org/cellosaurus/CVCL_0058

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-2.2.aspx


title: ChIP-seq from HeLa-S3 (ENCLB996KYG)

description:
https://www.encodeproject.org/experiments/ENCSR634ZGP/
***************
biological replicate number: 2
technical replicate number: 1
description: UBTF ChIP-seq on human HeLa-S3
experiment encode accession: ENCSR634ZGP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR760PBD
encode release date: 2016-07-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB996KYG
size range: 450-650

value: Michael Snyder, Stanford

value: ENCBS748HNU at ENCODE; https://www.encodeproject.org/ENCBS748HNU/


title: siRNA RNA-seq from K562 (ENCLB144MCV)

description:
https://www.encodeproject.org/experiments/ENCSR641CMW/
***************
biological replicate number: 1
technical replicate number: 1
description: Control siRNA against no target in K562 cells followed by RNA-seq.
experiment encode accession: ENCSR641CMW
assay title: siRNA RNA-seq
assembly: GRCh38
encode release date: 2016-11-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB144MCV
size range: >200
spikeins used: /references/ENCSR866KGS/

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens K562 immortalized cell line transiently expressing siRNA targeting Non-specific target control

value: Control

value: K562 cells treated with siRNA knockdown using a human non-targeting control.

value: 53 year

value: Sherman Weissman, Yale

value: chronic myelogenous leukemia (CML)

value: ENCBS532JUO at ENCODE; https://www.encodeproject.org/ENCBS532JUO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: eCLIP from K562 (ENCLB050DGH)

description:
https://www.encodeproject.org/experiments/ENCSR887FHF/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against FASTKD2
experiment encode accession: ENCSR887FHF
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR119AFY
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB050DGH
size range: 175-300

source_name: Homo sapiens K562 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf

value: immortalized cell line

value: adult

value: Gene Yeo, UCSD

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293T (ENCLB514CUO)

description:
https://www.encodeproject.org/experiments/ENCSR872BOU/
***************
biological replicate number: 1
technical replicate number: 1
description: FOXK2 ChIP-seq on human HEK293T
experiment encode accession: ENCSR872BOU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR272LXW
encode release date: 2016-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB514CUO
size range: 450-650

value: embryonic

value: female

value: unknown

value: ENCBS323RYE at ENCODE; https://www.encodeproject.org/ENCBS323RYE/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB248NVD)

description:
https://www.encodeproject.org/experiments/ENCSR871TKJ/
***************
biological replicate number: 1
technical replicate number: 1
description: THRAP3 ChIP-seq on human K562
experiment encode accession: ENCSR871TKJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB248NVD
size range: 450-650

value: Michael Snyder, Stanford

value: ENCBS783WYV at ENCODE; https://www.encodeproject.org/ENCBS783WYV/


title: eCLIP from K562 (ENCLB155MEP)

description:
https://www.encodeproject.org/experiments/ENCSR869TOB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against PUS1
experiment encode accession: ENCSR869TOB
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB155MEP
size range: 175-300

value: Control

value: 53 year

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/


title: ChIP-seq from K562 (ENCLB296MDB)

description:
https://www.encodeproject.org/experiments/ENCSR632SHZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-NFE2L1 ChIP-seq on human K562
experiment encode accession: ENCSR632SHZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922MYB
encode release date: 2016-03-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB296MDB
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-NFE2L1 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to NFE2L1

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: ENCBS378YNT at ENCODE; https://www.encodeproject.org/ENCBS378YNT/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW35; http://web.expasy.org/cellosaurus/CVCL_AW35


title: ChIP-seq from HEK293 (ENCLB501RTX)

description:
https://www.encodeproject.org/experiments/ENCSR631WAA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZBTB17 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR631WAA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB501RTX
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZBTB17 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZBTB17 under the control of a CMV promoter.

value: ENCBS492OGG at ENCODE; https://www.encodeproject.org/ENCBS492OGG/


title: ChIP-seq from MCF-7 (ENCLB127POU)

description:
https://www.encodeproject.org/experiments/ENCSR864KNH/
***************
biological replicate number: 2
technical replicate number: 1
description: YBX1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR864KNH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB127POU
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: adult

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS000RXG at ENCODE; https://www.encodeproject.org/ENCBS000RXG/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from K562 (ENCLB789MHG)

description:
https://www.encodeproject.org/experiments/ENCSR632DCH/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ATF3 ChIP-seq on human K562
experiment encode accession: ENCSR632DCH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR565XPP
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB789MHG

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ATF3 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ATF3-L

value: 53 year

value: ENCBS397AAA at ENCODE; https://www.encodeproject.org/ENCBS397AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ76; http://web.expasy.org/cellosaurus/CVCL_GZ76

value: ENCODE dbxrefs K562; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=K562


title: ChIP-seq from HEK293 (ENCLB693KOP)

description:
https://www.encodeproject.org/experiments/ENCSR862QUL/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF382 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR862QUL
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB693KOP
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF382 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF382 under the control of a CMV promoter.

value: unknown

value: embryonic

value: Michael Snyder, Stanford

value: ENCBS579SBI at ENCODE; https://www.encodeproject.org/ENCBS579SBI/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293T (ENCLB378WBH)

description:
https://www.encodeproject.org/experiments/ENCSR862PNL/
***************
biological replicate number: 2
technical replicate number: 1
description: L3MBTL2 ChIP-seq on human HEK293T
experiment encode accession: ENCSR862PNL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR272LXW
encode release date: 2016-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB378WBH
size range: 450-650

value: immortalized cell line

value: ENCBS582KZL at ENCODE; https://www.encodeproject.org/ENCBS582KZL/


title: eCLIP from K562 (ENCLB345CIF)

description:
https://www.encodeproject.org/experiments/ENCSR628IDK/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against KHDRBS1
experiment encode accession: ENCSR628IDK
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR197NFH
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB345CIF
size range: 175-300

extract_protocol:
pipeline protocol: https://www.encodeproject.org/documents/dde0b669-0909-4f8b-946d-3cb9f35a6c52/@@download/attachment/eCLIP_analysisSOP_v1.P.pdf
general protocol: https://www.encodeproject.org/documents/842f7424-5396-424a-a1a3-3f18707c3222/@@download/attachment/eCLIP_SOP_v1.P_110915.pdf
extraction method: see document

value: adult

value: female

value: Gene Yeo, UCSD

value: chronic myelogenous leukemia (CML)

value: ENCBS931MQO at ENCODE; https://www.encodeproject.org/ENCBS931MQO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB917NMY)

description:
https://www.encodeproject.org/experiments/ENCSR632DCH/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ATF3 ChIP-seq on human K562
experiment encode accession: ENCSR632DCH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR565XPP
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB917NMY

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ATF3-L

value: 53 year

value: Kevin White, UChicago

value: ENCBS458AAA at ENCODE; https://www.encodeproject.org/ENCBS458AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ76; http://web.expasy.org/cellosaurus/CVCL_GZ76


title: ChIP-seq from HEK293 (ENCLB783OTL)

description:
https://www.encodeproject.org/experiments/ENCSR631WAA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZBTB17 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR631WAA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB783OTL
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZBTB17 under the control of a CMV promoter.

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS056OOQ at ENCODE; https://www.encodeproject.org/ENCBS056OOQ/


title: eCLIP from HepG2 (ENCLB994TSW)

description:
https://www.encodeproject.org/experiments/ENCSR629MQN/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against SRSF7
experiment encode accession: ENCSR629MQN
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB994TSW
size range: 175-300

source_name: Homo sapiens HepG2 immortalized cell line

value: Control

value: immortalized cell line

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS547JWV at ENCODE; https://www.encodeproject.org/ENCBS547JWV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from HepG2 (ENCLB322HTR)

description:
https://www.encodeproject.org/experiments/ENCSR845VGB/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against DDX55
experiment encode accession: ENCSR845VGB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR454OFD
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB322HTR
size range: 175-300

value: Gene Yeo, UCSD

value: ENCBS492SDY at ENCODE; https://www.encodeproject.org/ENCBS492SDY/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293T (ENCLB534WWE)

description:
https://www.encodeproject.org/experiments/ENCSR862PNL/
***************
biological replicate number: 1
technical replicate number: 1
description: L3MBTL2 ChIP-seq on human HEK293T
experiment encode accession: ENCSR862PNL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR272LXW
encode release date: 2016-11-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB534WWE
size range: 450-650

value: female

value: ENCBS323RYE at ENCODE; https://www.encodeproject.org/ENCBS323RYE/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB980IGR)

description:
https://www.encodeproject.org/experiments/ENCSR862QUL/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF382 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR862QUL
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB980IGR
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF382 under the control of a CMV promoter.

value: unknown

value: embryonic

value: Michael Snyder, Stanford

value: ENCBS816ABD at ENCODE; https://www.encodeproject.org/ENCBS816ABD/


title: siRNA RNA-seq from K562 (ENCLB767MHP)

description:
https://www.encodeproject.org/experiments/ENCSR626SFM/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting BHLHE40.
experiment encode accession: ENCSR626SFM
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR109YDL, ENCSR126QVF
encode release date: 2016-10-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB767MHP
size range: >200
spikeins used: /references/ENCSR866KGS/

source_name: Homo sapiens K562 immortalized cell line transiently expressing siRNA targeting BHLHE40

value: immortalized cell line

value: K562 cells treated with a siRNA knockdown against BHLHE40, used in RNA-seq experiments.

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Sherman Weissman, Yale

value: ENCBS102HDN at ENCODE; https://www.encodeproject.org/ENCBS102HDN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB069WHB)

description:
https://www.encodeproject.org/experiments/ENCSR632SHZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-NFE2L1 ChIP-seq on human K562
experiment encode accession: ENCSR632SHZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922MYB
encode release date: 2016-03-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB069WHB
size range: 450-650

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to NFE2L1

value: female

value: Kevin White, UChicago

value: ENCBS151LVY at ENCODE; https://www.encodeproject.org/ENCBS151LVY/

value: ENCODE dbxrefs Cellosaurus CVCL_AW35; http://web.expasy.org/cellosaurus/CVCL_AW35


title: ChIP-seq from K562 (ENCLB361EOC)

description:
https://www.encodeproject.org/experiments/ENCSR871TKJ/
***************
biological replicate number: 2
technical replicate number: 1
description: THRAP3 ChIP-seq on human K562
experiment encode accession: ENCSR871TKJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB361EOC
size range: 450-650

value: ENCBS101QRF at ENCODE; https://www.encodeproject.org/ENCBS101QRF/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: siRNA RNA-seq from K562 (ENCLB230HXE)

description:
https://www.encodeproject.org/experiments/ENCSR626SFM/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on K562 cells treated with siRNA targeting BHLHE40.
experiment encode accession: ENCSR626SFM
assay title: siRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR109YDL, ENCSR126QVF
encode release date: 2016-10-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB230HXE
size range: >200
spikeins used: /references/ENCSR866KGS/

value: ENCBS334CFW at ENCODE; https://www.encodeproject.org/ENCBS334CFW/


title: eCLIP from K562 (ENCLB955TLT)

description:
https://www.encodeproject.org/experiments/ENCSR844RVX/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against EFTUD2
experiment encode accession: ENCSR844RVX
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR266UVO
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB955TLT
size range: 175-300

value: immortalized cell line

value: Gene Yeo, UCSD

value: ENCBS505ILK at ENCODE; https://www.encodeproject.org/ENCBS505ILK/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB502FQO)

description:
https://www.encodeproject.org/experiments/ENCSR628IDK/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against KHDRBS1
experiment encode accession: ENCSR628IDK
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR197NFH
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB502FQO
size range: 175-300

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS831COV at ENCODE; https://www.encodeproject.org/ENCBS831COV/


title: eCLIP from HepG2 (ENCLB828RSR)

description:
https://www.encodeproject.org/experiments/ENCSR845VGB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against DDX55
experiment encode accession: ENCSR845VGB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR454OFD
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB828RSR
size range: 175-300

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB857BOS)

description:
https://www.encodeproject.org/experiments/ENCSR626QJQ/
***************
biological replicate number: 1
technical replicate number: 1
description: CSDE1 ChIP-seq on human K562
experiment encode accession: ENCSR626QJQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2016-09-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB857BOS
size range: 450-650

value: female

value: Michael Snyder, Stanford

value: ENCBS344LIE at ENCODE; https://www.encodeproject.org/ENCBS344LIE/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from HepG2 (ENCLB451XHG)

description:
https://www.encodeproject.org/experiments/ENCSR835ZOK/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against GRWD1
experiment encode accession: ENCSR835ZOK
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB451XHG
size range: 175-300

value: Control

value: immortalized cell line

value: Gene Yeo, UCSD

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB989JCQ)

description:
https://www.encodeproject.org/experiments/ENCSR844RVX/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against EFTUD2
experiment encode accession: ENCSR844RVX
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR266UVO
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB989JCQ
size range: 175-300

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/


title: eCLIP from HepG2 (ENCLB719MGT)

description:
https://www.encodeproject.org/experiments/ENCSR830BSQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against BUD13
experiment encode accession: ENCSR830BSQ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR777PDA
encode release date: 2015-12-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB719MGT
size range: 175-300

extract_protocol:
pipeline protocol: https://www.encodeproject.org/documents/dde0b669-0909-4f8b-946d-3cb9f35a6c52/@@download/attachment/eCLIP_analysisSOP_v1.P.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS308ZPA at ENCODE; https://www.encodeproject.org/ENCBS308ZPA/


title: eCLIP from HepG2 (ENCLB374RYB)

description:
https://www.encodeproject.org/experiments/ENCSR623VEQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against TIA1
experiment encode accession: ENCSR623VEQ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR333PZV
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB374RYB
size range: 175-300

value: ENCBS537ADD at ENCODE; https://www.encodeproject.org/ENCBS537ADD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB814QOY)

description:
https://www.encodeproject.org/experiments/ENCSR626QJQ/
***************
biological replicate number: 2
technical replicate number: 1
description: CSDE1 ChIP-seq on human K562
experiment encode accession: ENCSR626QJQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2016-09-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB814QOY
size range: 450-650

value: female

value: Michael Snyder, Stanford

value: ENCBS719UQU at ENCODE; https://www.encodeproject.org/ENCBS719UQU/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from HepG2 (ENCLB482NEH)

description:
https://www.encodeproject.org/experiments/ENCSR830BSQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against BUD13
experiment encode accession: ENCSR830BSQ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR777PDA
encode release date: 2015-12-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB482NEH
size range: 175-300

value: immortalized cell line

value: Gene Yeo, UCSD

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB906RKA)

description:
https://www.encodeproject.org/experiments/ENCSR623SDL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-PBX2 tagged K562 cell line.
experiment encode accession: ENCSR623SDL
assay title: ChIP-seq
encode release date: 2016-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB906RKA

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-PBX2 fusion protein

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to PBX2

value: adult

value: 53 year

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: ENCBS753ZIZ at ENCODE; https://www.encodeproject.org/ENCBS753ZIZ/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ92; http://web.expasy.org/cellosaurus/CVCL_GZ92


title: eCLIP from K562 (ENCLB373HPU)

description:
https://www.encodeproject.org/experiments/ENCSR828NSY/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against DROSHA
experiment encode accession: ENCSR828NSY
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB373HPU
size range: 175-300

value: female

value: ENCBS318IMK at ENCODE; https://www.encodeproject.org/ENCBS318IMK/


title: eCLIP from K562 (ENCLB547DSI)

description:
https://www.encodeproject.org/experiments/ENCSR619RLC/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against TRA2A
experiment encode accession: ENCSR619RLC
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB547DSI
size range: 175-300

value: ENCBS774KGY at ENCODE; https://www.encodeproject.org/ENCBS774KGY/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HEK293 (ENCLB541OLX)

description:
https://www.encodeproject.org/experiments/ENCSR617IFZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-CTCF ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR617IFZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB541OLX
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-CTCF fusion protein

value: eGFP-CTCF

value: HEK293 cell line stably expressing N-terminal tagged eGFP-CTCF under the control of a CMV promoter.

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS268XWC at ENCODE; https://www.encodeproject.org/ENCBS268XWC/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB485DXZ)

description:
https://www.encodeproject.org/experiments/ENCSR822CCM/
***************
biological replicate number: 1
technical replicate number: 1
description: ARID1B ChIP-seq on human K562
experiment encode accession: ENCSR822CCM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB485DXZ
size range: 450-650

value: immortalized cell line

value: adult

value: ENCBS320BUL at ENCODE; https://www.encodeproject.org/ENCBS320BUL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB011FKD)

description:
https://www.encodeproject.org/experiments/ENCSR619GFP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-HINFP ChIP-seq on human K562
experiment encode accession: ENCSR619GFP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR557SDQ
encode release date: 2016-03-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB011FKD
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-HINFP fusion protein

value: eGFP-HINFP

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to HINFP

value: 53 year

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: ENCBS436RZW at ENCODE; https://www.encodeproject.org/ENCBS436RZW/

value: ENCODE dbxrefs Cellosaurus CVCL_AW24; http://web.expasy.org/cellosaurus/CVCL_AW24


title: eCLIP from K562 (ENCLB293LCZ)

description:
https://www.encodeproject.org/experiments/ENCSR825SVO/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against AARS
experiment encode accession: ENCSR825SVO
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR696PRX
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB293LCZ
size range: 175-300

value: AARS

value: female

value: Gene Yeo, UCSD

value: ENCBS505ILK at ENCODE; https://www.encodeproject.org/ENCBS505ILK/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB540BAL)

description:
https://www.encodeproject.org/experiments/ENCSR619GFP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-HINFP ChIP-seq on human K562
experiment encode accession: ENCSR619GFP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR557SDQ
encode release date: 2016-03-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB540BAL
size range: 450-650

value: immortalized cell line

value: ENCBS595XIW at ENCODE; https://www.encodeproject.org/ENCBS595XIW/


title: eCLIP from K562 (ENCLB437FMX)

description:
https://www.encodeproject.org/experiments/ENCSR825SVO/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against AARS
experiment encode accession: ENCSR825SVO
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR696PRX
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB437FMX
size range: 175-300

value: adult

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/


title: eCLIP from HepG2 (ENCLB178WJJ)

description:
https://www.encodeproject.org/experiments/ENCSR614VYQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against HNRNPU
experiment encode accession: ENCSR614VYQ
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB178WJJ
size range: 175-300

value: Control

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS449LCQ at ENCODE; https://www.encodeproject.org/ENCBS449LCQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HEK293 (ENCLB048DBS)

description:
https://www.encodeproject.org/experiments/ENCSR617IFZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-CTCF ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR617IFZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB048DBS
size range: 450-650

value: eGFP-CTCF

value: HEK293 cell line stably expressing N-terminal tagged eGFP-CTCF under the control of a CMV promoter.

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS454VNJ at ENCODE; https://www.encodeproject.org/ENCBS454VNJ/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB034SHO)

description:
https://www.encodeproject.org/experiments/ENCSR822CCM/
***************
biological replicate number: 2
technical replicate number: 1
description: ARID1B ChIP-seq on human K562
experiment encode accession: ENCSR822CCM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB034SHO
size range: 450-650

value: immortalized cell line

value: adult

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS906KIP at ENCODE; https://www.encodeproject.org/ENCBS906KIP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from HepG2 (ENCLB083RGE)

description:
https://www.encodeproject.org/experiments/ENCSR828MEJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against RPS5
experiment encode accession: ENCSR828MEJ
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB083RGE
size range: 175-300

value: Control

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB947OLN)

description:
https://www.encodeproject.org/experiments/ENCSR820DQJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against NOL12
experiment encode accession: ENCSR820DQJ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR709ABG
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB947OLN
size range: 175-300

value: immortalized cell line

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from A549 (ENCLB944FQY)

description:
https://www.encodeproject.org/experiments/ENCSR610YRT/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on human A549
experiment encode accession: ENCSR610YRT
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB944FQY
size range: 450-650

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: ENCBS611JSC at ENCODE; https://www.encodeproject.org/ENCBS611JSC/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from A549 (ENCLB023YGD)

description:
https://www.encodeproject.org/experiments/ENCSR610YRT/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on human A549
experiment encode accession: ENCSR610YRT
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB023YGD
size range: 450-650

value: Control

value: male

value: ENCBS848SUF at ENCODE; https://www.encodeproject.org/ENCBS848SUF/


title: ChIP-seq from HeLa-S3 (ENCLB716JPW)

description:
https://www.encodeproject.org/experiments/ENCSR611WZO/
***************
biological replicate number: 2
technical replicate number: 1
description: SREBF2 ChIP-seq on human HeLa-S3
experiment encode accession: ENCSR611WZO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR760PBD
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB716JPW
size range: 450-650

value: Cervical adenocarcinoma

value: 31 year

value: female

value: cervical adenocarcinoma

value: ENCBS854BZN at ENCODE; https://www.encodeproject.org/ENCBS854BZN/

value: Derived from ENCODE donor ENCDO000AAB; https://www.encodeproject.org/ENCDO000AAB/

value: ENCODE dbxrefs Cellosaurus CVCL_0058; http://web.expasy.org/cellosaurus/CVCL_0058

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-2.2.aspx


title: eCLIP from HepG2 (ENCLB615HVB)

description:
https://www.encodeproject.org/experiments/ENCSR805SRN/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against LARP4
experiment encode accession: ENCSR805SRN
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR192PUP
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB615HVB
size range: 175-300

value: immortalized cell line

value: child

value: 15 year

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS492SDY at ENCODE; https://www.encodeproject.org/ENCBS492SDY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HeLa-S3 (ENCLB550FJX)

description:
https://www.encodeproject.org/experiments/ENCSR611WZO/
***************
biological replicate number: 3
technical replicate number: 1
description: SREBF2 ChIP-seq on human HeLa-S3
experiment encode accession: ENCSR611WZO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR760PBD
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB550FJX
size range: 450-650

value: Cervical adenocarcinoma

value: adult

value: Michael Snyder, Stanford

value: ENCBS352IHZ at ENCODE; https://www.encodeproject.org/ENCBS352IHZ/


title: eCLIP from HepG2 (ENCLB309QWE)

description:
https://www.encodeproject.org/experiments/ENCSR623VEQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against TIA1
experiment encode accession: ENCSR623VEQ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR333PZV
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB309QWE
size range: 175-300

value: male

value: ENCBS547JWV at ENCODE; https://www.encodeproject.org/ENCBS547JWV/


title: ChIP-seq from K562 (ENCLB645ARI)

description:
https://www.encodeproject.org/experiments/ENCSR608HVP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-KLF13 ChIP-seq on human K562
experiment encode accession: ENCSR608HVP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR962GNR
encode release date: 2016-03-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB645ARI
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-KLF13 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to KLF13

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Kevin White, UChicago

value: ENCBS078AAA at ENCODE; https://www.encodeproject.org/ENCBS078AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW33; http://web.expasy.org/cellosaurus/CVCL_AW33


title: eCLIP from HepG2 (ENCLB514ZXV)

description:
https://www.encodeproject.org/experiments/ENCSR815VVI/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against CDC40
experiment encode accession: ENCSR815VVI
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR828ALT
encode release date: 2016-10-31
lab: Gene Yeo, UCSD
library encode accession: ENCLB514ZXV
size range: 175-300

value: immortalized cell line

value: child

value: 15 year

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS492SDY at ENCODE; https://www.encodeproject.org/ENCBS492SDY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: eCLIP from HepG2 (ENCLB314QQN)

description:
https://www.encodeproject.org/experiments/ENCSR820DQJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against NOL12
experiment encode accession: ENCSR820DQJ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR709ABG
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB314QQN
size range: 175-300

value: male

value: ENCBS308ZPA at ENCODE; https://www.encodeproject.org/ENCBS308ZPA/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB123PMR)

description:
https://www.encodeproject.org/experiments/ENCSR828ALT/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against CDC40
experiment encode accession: ENCSR828ALT
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-10-31
lab: Gene Yeo, UCSD
library encode accession: ENCLB123PMR
size range: 175-300

value: Control

value: ENCBS881CIF at ENCODE; https://www.encodeproject.org/ENCBS881CIF/


title: eCLIP from K562 (ENCLB098QVZ)

description:
https://www.encodeproject.org/experiments/ENCSR616BTD/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against DGCR8
experiment encode accession: ENCSR616BTD
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB098QVZ
size range: 175-300

value: adult

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS931MQO at ENCODE; https://www.encodeproject.org/ENCBS931MQO/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB203KFJ)

description:
https://www.encodeproject.org/experiments/ENCSR608HVP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-KLF13 ChIP-seq on human K562
experiment encode accession: ENCSR608HVP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR962GNR
encode release date: 2016-03-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB203KFJ
size range: 450-650

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to KLF13

value: Kevin White, UChicago

value: ENCBS432AAA at ENCODE; https://www.encodeproject.org/ENCBS432AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW33; http://web.expasy.org/cellosaurus/CVCL_AW33

value: ENCODE dbxrefs K562; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=K562


title: eCLIP from HepG2 (ENCLB148JZM)

description:
https://www.encodeproject.org/experiments/ENCSR815VVI/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against CDC40
experiment encode accession: ENCSR815VVI
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR828ALT
encode release date: 2016-10-31
lab: Gene Yeo, UCSD
library encode accession: ENCLB148JZM
size range: 175-300

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HepG2 (ENCLB711ESZ)

description:
https://www.encodeproject.org/experiments/ENCSR605YWG/
***************
biological replicate number: 3
technical replicate number: 1
description: TBX3 ChIP-seq on human HepG2
experiment encode accession: ENCSR605YWG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB711ESZ
size range: 450-650

value: Hepatocellular carcinoma

value: Michael Snyder, Stanford

value: ENCBS591PPP at ENCODE; https://www.encodeproject.org/ENCBS591PPP/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB778MLD)

description:
https://www.encodeproject.org/experiments/ENCSR803GYT/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-HIC1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR803GYT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB778MLD
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-HIC1 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-HIC1 under the control of a CMV promoter.

value: embryonic

value: female

value: unknown

value: ENCBS237PTC at ENCODE; https://www.encodeproject.org/ENCBS237PTC/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB986OLV)

description:
https://www.encodeproject.org/experiments/ENCSR803GYT/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-HIC1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR803GYT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB986OLV
size range: 450-650

value: ENCBS633JQE at ENCODE; https://www.encodeproject.org/ENCBS633JQE/


title: eCLIP from HepG2 (ENCLB532OVV)

description:
https://www.encodeproject.org/experiments/ENCSR786TSC/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against ILF3
experiment encode accession: ENCSR786TSC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR080OLK
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB532OVV
size range: 175-300

value: child

value: 15 year

value: male

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/


title: eCLIP from HepG2 (ENCLB579IXQ)

description:
https://www.encodeproject.org/experiments/ENCSR786TSC/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against ILF3
experiment encode accession: ENCSR786TSC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR080OLK
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB579IXQ
size range: 175-300

value: hepatocellular carcinoma

value: Gene Yeo, UCSD

value: ENCBS308ZPA at ENCODE; https://www.encodeproject.org/ENCBS308ZPA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HEK293 (ENCLB650KPF)

description:
https://www.encodeproject.org/experiments/ENCSR605MGM/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-SCRT1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR605MGM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB650KPF
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-SCRT1 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-SCRT1 under the control of a CMV promoter.

value: Michael Snyder, Stanford

value: ENCBS869DNC at ENCODE; https://www.encodeproject.org/ENCBS869DNC/


title: eCLIP from HepG2 (ENCLB792DST)

description:
https://www.encodeproject.org/experiments/ENCSR805SRN/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against LARP4
experiment encode accession: ENCSR805SRN
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR192PUP
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB792DST
size range: 175-300

value: ENCBS881CIF at ENCODE; https://www.encodeproject.org/ENCBS881CIF/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293T (ENCLB791OSI)

description:
https://www.encodeproject.org/experiments/ENCSR789GVU/
***************
biological replicate number: 1
technical replicate number: 1
description: BHLHE40 ChIP-seq on human HEK293T
experiment encode accession: ENCSR789GVU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR272LXW
encode release date: 2016-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB791OSI
size range: 450-650

source_name: Homo sapiens HEK293T immortalized cell line

value: embryonic

value: female

value: unknown

value: ENCBS323RYE at ENCODE; https://www.encodeproject.org/ENCBS323RYE/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB494OAW)

description:
https://www.encodeproject.org/experiments/ENCSR603CJM/
***************
biological replicate number: 1
technical replicate number: 2
description: Input ChIP-seq on eGFP-ZNF423 tagged human HEK293 cells.
experiment encode accession: ENCSR603CJM
assay title: ChIP-seq
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB494OAW
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF423 fusion protein

value: Control

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF423 under the control of a CMV promoter.

value: ENCBS519RHO at ENCODE; https://www.encodeproject.org/ENCBS519RHO/


title: ChIP-seq from HEK293T (ENCLB602AKW)

description:
https://www.encodeproject.org/experiments/ENCSR789GVU/
***************
biological replicate number: 2
technical replicate number: 1
description: BHLHE40 ChIP-seq on human HEK293T
experiment encode accession: ENCSR789GVU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR272LXW
encode release date: 2016-11-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB602AKW
size range: 450-650

value: ENCBS276VDW at ENCODE; https://www.encodeproject.org/ENCBS276VDW/


title: ChIP-seq from HEK293 (ENCLB643TMZ)

description:
https://www.encodeproject.org/experiments/ENCSR604VWJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-KLF7 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR604VWJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB643TMZ
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-KLF7 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-KLF7 under the control of a CMV promoter.

value: ENCBS079LXY at ENCODE; https://www.encodeproject.org/ENCBS079LXY/


title: eCLIP from HepG2 (ENCLB664POM)

description:
https://www.encodeproject.org/experiments/ENCSR777PDA/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against BUD13
experiment encode accession: ENCSR777PDA
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-12-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB664POM
size range: 175-300

value: immortalized cell line

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from MCF-7 (ENCLB706DGY)

description:
https://www.encodeproject.org/experiments/ENCSR594UCI/
***************
biological replicate number: 2
technical replicate number: 1
description: rabbit-IgG-control ChIP-seq on human MCF-7
experiment encode accession: ENCSR594UCI
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB706DGY
size range: 450-650

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: adult

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: Michael Snyder, Stanford

value: ENCBS034XKZ at ENCODE; https://www.encodeproject.org/ENCBS034XKZ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from HEK293 (ENCLB248JRW)

description:
https://www.encodeproject.org/experiments/ENCSR604VWJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-KLF7 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR604VWJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB248JRW
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-KLF7 under the control of a CMV promoter.

value: embryonic

value: unknown

value: ENCBS184IBZ at ENCODE; https://www.encodeproject.org/ENCBS184IBZ/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from HepG2 (ENCLB420HIQ)

description:
https://www.encodeproject.org/experiments/ENCSR775UPS/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against RBM22
experiment encode accession: ENCSR775UPS
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB420HIQ
size range: 175-300

value: Control

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from GM12878 (ENCLB748PSO)

description:
https://www.encodeproject.org/experiments/ENCSR597VGC/
***************
biological replicate number: 2
technical replicate number: 1
description: ETV6 ChIP-seq on human GM12878
experiment encode accession: ENCSR597VGC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB748PSO
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: adult

value: female

value: Michael Snyder, Stanford

value: ENCBS260WJQ at ENCODE; https://www.encodeproject.org/ENCBS260WJQ/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: ChIP-seq from K562 (ENCLB662OQQ)

description:
https://www.encodeproject.org/experiments/ENCSR780BBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ZZZ3 ChIP-seq on human K562
experiment encode accession: ENCSR780BBJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-12-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB662OQQ
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: immortalized cell line

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS320BUL at ENCODE; https://www.encodeproject.org/ENCBS320BUL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from MCF-7 (ENCLB534FYH)

description:
https://www.encodeproject.org/experiments/ENCSR594UCI/
***************
biological replicate number: 1
technical replicate number: 1
description: rabbit-IgG-control ChIP-seq on human MCF-7
experiment encode accession: ENCSR594UCI
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB534FYH
size range: 450-650

value: Control

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS216AOQ at ENCODE; https://www.encodeproject.org/ENCBS216AOQ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: eCLIP from K562 (ENCLB491IVH)

description:
https://www.encodeproject.org/experiments/ENCSR887FHF/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against FASTKD2
experiment encode accession: ENCSR887FHF
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR119AFY
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB491IVH
size range: 175-300

value: adult

value: female

value: Gene Yeo, UCSD

value: ENCBS318IMK at ENCODE; https://www.encodeproject.org/ENCBS318IMK/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB554XAY)

description:
https://www.encodeproject.org/experiments/ENCSR756CKJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against RBFOX2
experiment encode accession: ENCSR756CKJ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR051IXX
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB554XAY
size range: 175-300

value: immortalized cell line

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS505ILK at ENCODE; https://www.encodeproject.org/ENCBS505ILK/


title: ChIP-seq from GM12878 (ENCLB417CPA)

description:
https://www.encodeproject.org/experiments/ENCSR597VGC/
***************
biological replicate number: 1
technical replicate number: 1
description: ETV6 ChIP-seq on human GM12878
experiment encode accession: ENCSR597VGC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB417CPA
size range: 450-650

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: Michael Snyder, Stanford

value: ENCBS802GDX at ENCODE; https://www.encodeproject.org/ENCBS802GDX/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: ChIP-seq from HEK293 (ENCLB199UQA)

description:
https://www.encodeproject.org/experiments/ENCSR605MGM/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-SCRT1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR605MGM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB199UQA
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-SCRT1 under the control of a CMV promoter.

value: embryonic

value: ENCBS570HPC at ENCODE; https://www.encodeproject.org/ENCBS570HPC/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from K562 (ENCLB800QNO)

description:
https://www.encodeproject.org/experiments/ENCSR756CKJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against RBFOX2
experiment encode accession: ENCSR756CKJ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR051IXX
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB800QNO
size range: 175-300

value: adult

value: female

value: Gene Yeo, UCSD

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from HepG2 (ENCLB887LXQ)

description:
https://www.encodeproject.org/experiments/ENCSR755PSW/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against EIF3D
experiment encode accession: ENCSR755PSW
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB887LXQ
size range: 175-300

value: Control

value: immortalized cell line

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB870EUO)

description:
https://www.encodeproject.org/experiments/ENCSR592KSP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZFP64 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR592KSP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB870EUO
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZFP64 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZFP64 under the control of a CMV promoter.

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS502HSC at ENCODE; https://www.encodeproject.org/ENCBS502HSC/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from MCF-7 (ENCLB933MVO)

description:
https://www.encodeproject.org/experiments/ENCSR864KNH/
***************
biological replicate number: 1
technical replicate number: 1
description: YBX1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR864KNH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB933MVO
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: adult

value: 69 year

value: female

value: breast cancer (adenocarcinoma)

value: ENCBS409BSE at ENCODE; https://www.encodeproject.org/ENCBS409BSE/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from HepG2 (ENCLB919FIG)

description:
https://www.encodeproject.org/experiments/ENCSR605YWG/
***************
biological replicate number: 2
technical replicate number: 1
description: TBX3 ChIP-seq on human HepG2
experiment encode accession: ENCSR605YWG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB919FIG
size range: 450-650

value: immortalized cell line

value: Hepatocellular carcinoma

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS039XPI at ENCODE; https://www.encodeproject.org/ENCBS039XPI/


title: ChIP-seq from HEK293 (ENCLB285SKH)

description:
https://www.encodeproject.org/experiments/ENCSR592KSP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZFP64 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR592KSP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB285SKH
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZFP64 under the control of a CMV promoter.

value: embryonic

value: unknown

value: ENCBS307QUS at ENCODE; https://www.encodeproject.org/ENCBS307QUS/


title: eCLIP from HepG2 (ENCLB626SKY)

description:
https://www.encodeproject.org/experiments/ENCSR754NDA/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against RBM15
experiment encode accession: ENCSR754NDA
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR317PWQ
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB626SKY
size range: 175-300

value: Gene Yeo, UCSD

value: ENCBS308ZPA at ENCODE; https://www.encodeproject.org/ENCBS308ZPA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB608QWG)

description:
https://www.encodeproject.org/experiments/ENCSR754NDA/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against RBM15
experiment encode accession: ENCSR754NDA
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR317PWQ
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB608QWG
size range: 175-300

value: ENCBS881CIF at ENCODE; https://www.encodeproject.org/ENCBS881CIF/


title: ChIP-seq from K562 (ENCLB154WSS)

description:
https://www.encodeproject.org/experiments/ENCSR780BBJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ZZZ3 ChIP-seq on human K562
experiment encode accession: ENCSR780BBJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-12-05
lab: Michael Snyder, Stanford
library encode accession: ENCLB154WSS
size range: 450-650

value: immortalized cell line

value: adult

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS906KIP at ENCODE; https://www.encodeproject.org/ENCBS906KIP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB836XAD)

description:
https://www.encodeproject.org/experiments/ENCSR591CCL/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF512 ChIP-seq on human K562
experiment encode accession: ENCSR591CCL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR108OFV
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB836XAD

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF512 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF512

value: Kevin White, UChicago

value: ENCBS259DFK at ENCODE; https://www.encodeproject.org/ENCBS259DFK/

value: ENCODE dbxrefs Cellosaurus CVCL_HA03; http://web.expasy.org/cellosaurus/CVCL_HA03


title: ChIP-seq from K562 (ENCLB502KXG)

description:
https://www.encodeproject.org/experiments/ENCSR591CCL/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF512 ChIP-seq on human K562
experiment encode accession: ENCSR591CCL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR108OFV
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB502KXG

value: ENCBS725WFV at ENCODE; https://www.encodeproject.org/ENCBS725WFV/


title: eCLIP from K562 (ENCLB310QWF)

description:
https://www.encodeproject.org/experiments/ENCSR752YLF/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against SERBP1
experiment encode accession: ENCSR752YLF
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB310QWF
size range: 175-300

value: Control

value: Gene Yeo, UCSD

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/


title: eCLIP from K562 (ENCLB284GVB)

description:
https://www.encodeproject.org/experiments/ENCSR750NTM/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against METAP2
experiment encode accession: ENCSR750NTM
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB284GVB
size range: 175-300

value: immortalized cell line

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB820NGL)

description:
https://www.encodeproject.org/experiments/ENCSR751CSY/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against UCHL5
experiment encode accession: ENCSR751CSY
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB820NGL
size range: 175-300

value: adult

value: female

value: 53 year


title: ChIP-seq from K562 (ENCLB798DKB)

description:
https://www.encodeproject.org/experiments/ENCSR587OQL/
***************
biological replicate number: 1
technical replicate number: 1
description: SMARCA4 ChIP-seq on human K562
experiment encode accession: ENCSR587OQL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB798DKB
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS603CUX at ENCODE; https://www.encodeproject.org/ENCBS603CUX/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB243QBC)

description:
https://www.encodeproject.org/experiments/ENCSR587OQL/
***************
biological replicate number: 2
technical replicate number: 1
description: SMARCA4 ChIP-seq on human K562
experiment encode accession: ENCSR587OQL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB243QBC
size range: 450-650

value: ENCBS719UQU at ENCODE; https://www.encodeproject.org/ENCBS719UQU/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from K562 (ENCLB844WUK)

description:
https://www.encodeproject.org/experiments/ENCSR584TCR/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against TDP43
experiment encode accession: ENCSR584TCR
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR924OLO
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB844WUK
size range: 175-300

value: TARDBP

value: ENCBS253VOZ at ENCODE; https://www.encodeproject.org/ENCBS253VOZ/


title: ChIP-seq from K562 (ENCLB955VGG)

description:
https://www.encodeproject.org/experiments/ENCSR578SNR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-CREB3 tagged K562 cell line.
experiment encode accession: ENCSR578SNR
assay title: ChIP-seq
encode release date: 2015-12-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB955VGG
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-CREB3 fusion protein

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to CREB3

value: Kevin White, UChicago

value: ENCBS753IIO at ENCODE; https://www.encodeproject.org/ENCBS753IIO/

value: ENCODE dbxrefs Cellosaurus CVCL_AW16; http://web.expasy.org/cellosaurus/CVCL_AW16


title: eCLIP from K562 (ENCLB332NWU)

description:
https://www.encodeproject.org/experiments/ENCSR725ARB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against AGGF1
experiment encode accession: ENCSR725ARB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR910LAN
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB332NWU
size range: 175-300

value: immortalized cell line

value: adult

value: female

value: Gene Yeo, UCSD

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB995RVX)

description:
https://www.encodeproject.org/experiments/ENCSR578FJY/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF641 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR578FJY
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB995RVX
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF641 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF641 under the control of a CMV promoter.

value: unknown

value: embryonic

value: Michael Snyder, Stanford

value: ENCBS150AAG at ENCODE; https://www.encodeproject.org/ENCBS150AAG/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB956QKL)

description:
https://www.encodeproject.org/experiments/ENCSR578DNH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-HDAC8 tagged K562 cell line.
experiment encode accession: ENCSR578DNH
assay title: ChIP-seq
encode release date: 2016-02-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB956QKL
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-HDAC8 fusion protein

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to HDAC8

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS443JHG at ENCODE; https://www.encodeproject.org/ENCBS443JHG/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW23; http://web.expasy.org/cellosaurus/CVCL_AW23


title: eCLIP from K562 (ENCLB533WPB)

description:
https://www.encodeproject.org/experiments/ENCSR725ARB/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against AGGF1
experiment encode accession: ENCSR725ARB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR910LAN
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB533WPB
size range: 175-300

value: immortalized cell line

value: adult

value: female

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from HEK293 (ENCLB120ZAC)

description:
https://www.encodeproject.org/experiments/ENCSR715QNO/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF362 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR715QNO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB120ZAC
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF362 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF362 under the control of a CMV promoter.

value: unknown

value: ENCBS493ARE at ENCODE; https://www.encodeproject.org/ENCBS493ARE/


title: ChIP-seq from HEK293 (ENCLB688ZVM)

description:
https://www.encodeproject.org/experiments/ENCSR715QNO/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF362 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR715QNO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB688ZVM
size range: 450-650

value: embryonic

value: Michael Snyder, Stanford

value: ENCBS409JDS at ENCODE; https://www.encodeproject.org/ENCBS409JDS/


title: ChIP-seq from HEK293 (ENCLB014LXR)

description:
https://www.encodeproject.org/experiments/ENCSR578FJY/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF641 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR578FJY
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB014LXR
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF641 under the control of a CMV promoter.

value: ENCBS705NZB at ENCODE; https://www.encodeproject.org/ENCBS705NZB/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from K562 (ENCLB754PZD)

description:
https://www.encodeproject.org/experiments/ENCSR584TCR/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against TDP43
experiment encode accession: ENCSR584TCR
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR924OLO
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB754PZD
size range: 175-300

value: TARDBP

value: 53 year

value: Gene Yeo, UCSD

value: chronic myelogenous leukemia (CML)

value: ENCBS931MQO at ENCODE; https://www.encodeproject.org/ENCBS931MQO/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB563IED)

description:
https://www.encodeproject.org/experiments/ENCSR714LYA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-PRDM2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR714LYA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB563IED
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-PRDM2 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-PRDM2 under the control of a CMV promoter.

value: female

value: ENCBS077EHF at ENCODE; https://www.encodeproject.org/ENCBS077EHF/


title: eCLIP from K562 (ENCLB791FIV)

description:
https://www.encodeproject.org/experiments/ENCSR576SHT/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against DDX42
experiment encode accession: ENCSR576SHT
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR200SAU
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB791FIV
size range: 175-300

value: adult

value: ENCBS638EYY at ENCODE; https://www.encodeproject.org/ENCBS638EYY/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HEK293 (ENCLB127IUL)

description:
https://www.encodeproject.org/experiments/ENCSR714LYA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-PRDM2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR714LYA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB127IUL
size range: 450-650

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS410VFQ at ENCODE; https://www.encodeproject.org/ENCBS410VFQ/


title: eCLIP from K562 (ENCLB582ELR)

description:
https://www.encodeproject.org/experiments/ENCSR696PRX/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against AARS
experiment encode accession: ENCSR696PRX
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB582ELR
size range: 175-300

value: Control

value: 53 year

value: Gene Yeo, UCSD

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/


title: eCLIP from HepG2 (ENCLB519BOO)

description:
https://www.encodeproject.org/experiments/ENCSR709ABG/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against NOL12
experiment encode accession: ENCSR709ABG
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB519BOO
size range: 175-300

source_name: Homo sapiens HepG2 immortalized cell line

value: immortalized cell line

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB458RDI)

description:
https://www.encodeproject.org/experiments/ENCSR576SHT/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against DDX42
experiment encode accession: ENCSR576SHT
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR200SAU
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB458RDI
size range: 175-300

value: adult

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS365DFQ at ENCODE; https://www.encodeproject.org/ENCBS365DFQ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from K562 (ENCLB650YGP)

description:
https://www.encodeproject.org/experiments/ENCSR571VHI/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against HNRNPUL1
experiment encode accession: ENCSR571VHI
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR482AWB
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB650YGP
size range: 175-300

value: 53 year

value: Gene Yeo, UCSD

value: ENCBS126AJR at ENCODE; https://www.encodeproject.org/ENCBS126AJR/


title: eCLIP from K562 (ENCLB015GJP)

description:
https://www.encodeproject.org/experiments/ENCSR571VHI/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against HNRNPUL1
experiment encode accession: ENCSR571VHI
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR482AWB
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB015GJP
size range: 175-300

value: immortalized cell line

value: ENCBS658KIL at ENCODE; https://www.encodeproject.org/ENCBS658KIL/


title: eCLIP from K562 (ENCLB279RPQ)

description:
https://www.encodeproject.org/experiments/ENCSR736LKF/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against BUD13
experiment encode accession: ENCSR736LKF
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB279RPQ
size range: 175-300

value: Control

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/


title: eCLIP from K562 (ENCLB922NVL)

description:
https://www.encodeproject.org/experiments/ENCSR687HHB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against XRCC6
experiment encode accession: ENCSR687HHB
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB922NVL
size range: 175-300

value: ENCBS318IMK at ENCODE; https://www.encodeproject.org/ENCBS318IMK/


title: eCLIP from HepG2 (ENCLB097KHV)

description:
https://www.encodeproject.org/experiments/ENCSR571ROL/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against XRCC6
experiment encode accession: ENCSR571ROL
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR044NGV
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB097KHV
size range: 175-300

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS859FFE at ENCODE; https://www.encodeproject.org/ENCBS859FFE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027