title: ChIP-seq from DOHH2 (ENCLB950CHJ)

description:
https://www.encodeproject.org/experiments/ENCSR623GZY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR623GZY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR742WWB
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB950CHJ
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens DOHH2 immortalized cell line

value: immortalized cell line

value: established from the pleural effusion of a 60-year-old man with refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma in 1990

value: 60 year

value: adult

value: male

value: Bradley Bernstein, Broad

value: ENCBS100ZVH at ENCODE; https://www.encodeproject.org/ENCBS100ZVH/

value: Derived from ENCODE donor ENCDO352AAA; https://www.encodeproject.org/ENCDO352AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1179; http://web.expasy.org/cellosaurus/CVCL_1179


title: ChIP-seq from HepG2 (ENCLB153SRE)

status: Public on Mar 12 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR590CNM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2-human
experiment encode accession: ENCSR590CNM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR476TKW, ENCSR716SYG
encode release date: 2016-03-31
lab: Richard Myers, HAIB
library encode accession: ENCLB153SRE

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens HepG2 immortalized cell line

tag: antibody

tag: line

tag: description

value: HepG2, hepatocellular carcinoma

tag: biosample encode accession

tag: dev stage

value: child

tag: Sex

tag: age

value: 15 year

tag: health state

value: hepatocellular carcinoma

tag: passage number

tag: lab

value: Richard Myers, HAIB

tag: link

value: ENCBS250DDC at ENCODE; https://www.encodeproject.org/ENCBS250DDC/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB751EES)

description:
https://www.encodeproject.org/experiments/ENCSR589SNT/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR589SNT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB751EES

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-TFE3 fusion protein, N-terminal FLAG-TFE3 fusion protein

value: immortalized cell line

value: ENCBS586MJR at ENCODE; https://www.encodeproject.org/ENCBS586MJR/


title: ChIP-seq from K562 (ENCLB145EIU)

description:
https://www.encodeproject.org/experiments/ENCSR588AKU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR588AKU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR599SPN, ENCSR996HUG
encode release date: 2016-03-31
lab: Richard Myers, HAIB
library encode accession: ENCLB145EIU

source_name: Homo sapiens K562 immortalized cell line

value: K562, myelogenous leukemia

value: 53 year

value: adult

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS316CKF at ENCODE; https://www.encodeproject.org/ENCBS316CKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from smooth muscle cell (ENCLB318QBD)

description:
https://www.encodeproject.org/experiments/ENCSR540UZV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR540UZV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-11-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB318QBD
size range: 200-600

source_name: Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9

value: smooth muscle cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: healthy

value: ENCBS780PCJ at ENCODE; https://www.encodeproject.org/ENCBS780PCJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from smooth muscle cell (ENCLB762VOZ)

description:
https://www.encodeproject.org/experiments/ENCSR540UZV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR540UZV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-11-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB762VOZ
size range: 200-600
nucleic acid starting quantity: 37.25
nucleic acid starting quantity units: ng

value: Richard Myers, HAIB

value: ENCBS899TTJ at ENCODE; https://www.encodeproject.org/ENCBS899TTJ/


title: ChIP-seq from NCI-H929 (ENCLB399SBG)

description:
https://www.encodeproject.org/experiments/ENCSR536SZD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR536SZD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB399SBG
size range: 200-600

source_name: Homo sapiens NCI-H929 immortalized cell line

value: immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: adult

value: 62 year

value: multiple myeloma

value: Bradley Bernstein, Broad

value: ENCBS571AQH at ENCODE; https://www.encodeproject.org/ENCBS571AQH/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from HepG2 (ENCLB653TSQ)

description:
https://www.encodeproject.org/experiments/ENCSR586DEH/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR586DEH
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB653TSQ

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ZFP1_isoform1 fusion protein, N-terminal FLAG-ZFP1_isoform1 fusion protein

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS062DDB at ENCODE; https://www.encodeproject.org/ENCBS062DDB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from SUDHL6 (ENCLB315XUH)

description:
https://www.encodeproject.org/experiments/ENCSR538KLU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR538KLU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB315XUH
size range: 200-600

source_name: Homo sapiens SUDHL6 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: 43 year

value: ENCBS401ZBX at ENCODE; https://www.encodeproject.org/ENCBS401ZBX/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: ChIP-seq from body of pancreas (ENCLB629IFL)

description:
https://www.encodeproject.org/experiments/ENCSR554RQQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR554RQQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR099LGH
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB629IFL
size range: 200-600

source_name: Homo sapiens body of pancreas tissue male adult (54 years)

value: body of pancreas

value: tissue

value: adult

value: 54 year

value: ENCBS209WBW at ENCODE; https://www.encodeproject.org/ENCBS209WBW/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from body of pancreas (ENCLB929UJX)

description:
https://www.encodeproject.org/experiments/ENCSR554RQQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR554RQQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR099LGH
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB929UJX
size range: 200-600

value: Bradley Bernstein, Broad


title: ChIP-seq from NCI-H929 (ENCLB722QLS)

description:
https://www.encodeproject.org/experiments/ENCSR536SZD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR536SZD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB722QLS
size range: 200-600

value: immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: female

value: 62 year

value: multiple myeloma

value: ENCBS197CBA at ENCODE; https://www.encodeproject.org/ENCBS197CBA/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from A673 (ENCLB332YQI)

description:
https://www.encodeproject.org/experiments/ENCSR581PUR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR581PUR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR196CXJ
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB332YQI
size range: 200-600
nucleic acid starting quantity: 0.946
nucleic acid starting quantity units: ng

source_name: Homo sapiens A673 immortalized cell line

value: Cell line is A673; this is a purchasable public domain cell type per Miguel Rivera, M.D.

value: unknown

value: 15 year

value: ENCBS385OLC at ENCODE; https://www.encodeproject.org/ENCBS385OLC/

value: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/

value: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080


title: ChIP-seq from HepG2 (ENCLB128ZXN)

description:
https://www.encodeproject.org/experiments/ENCSR589SNT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR589SNT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB128ZXN

value: child

value: male

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS173ZET at ENCODE; https://www.encodeproject.org/ENCBS173ZET/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB749JUD)

description:
https://www.encodeproject.org/experiments/ENCSR578CXC/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR578CXC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB749JUD

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ZNF644 fusion protein

value: immortalized cell line

value: ENCBS585KCW at ENCODE; https://www.encodeproject.org/ENCBS585KCW/


title: ChIP-seq from HepG2 (ENCLB371NNS)

description:
https://www.encodeproject.org/experiments/ENCSR571PDN/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR571PDN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB371NNS

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-SSRP1 fusion protein

value: ENCBS134OGP at ENCODE; https://www.encodeproject.org/ENCBS134OGP/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB962DFW)

description:
https://www.encodeproject.org/experiments/ENCSR571CEX/
***************
biological replicate number: 11
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human K562 (fragmentation date 04-08-13)
experiment encode accession: ENCSR571CEX
assay title: ChIP-seq
encode release date: 2016-01-08
lab: Richard Myers, HAIB
library encode accession: ENCLB962DFW
size range: 100-500

value: Control

value: K562, myelogenous leukemia

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS149SJX at ENCODE; https://www.encodeproject.org/ENCBS149SJX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HepG2 (ENCLB710ZBC)

description:
https://www.encodeproject.org/experiments/ENCSR571PDN/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR571PDN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB710ZBC

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS783PVI at ENCODE; https://www.encodeproject.org/ENCBS783PVI/


title: ChIP-seq from HepG2 (ENCLB505EAS)

description:
https://www.encodeproject.org/experiments/ENCSR578CXC/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR578CXC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB505EAS

value: immortalized cell line

value: ENCBS684NYN at ENCODE; https://www.encodeproject.org/ENCBS684NYN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB299DNH)

description:
https://www.encodeproject.org/experiments/ENCSR569ARC/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR569ARC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB299DNH

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-NFYC fusion protein, N-terminal FLAG-NFYC fusion protein

value: FLAG-NFYC

value: ENCBS665WXW at ENCODE; https://www.encodeproject.org/ENCBS665WXW/


title: ChIP-seq from HepG2 (ENCLB455NSX)

description:
https://www.encodeproject.org/experiments/ENCSR586DEH/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR586DEH
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB455NSX

value: ENCBS419VLW at ENCODE; https://www.encodeproject.org/ENCBS419VLW/


title: ChIP-seq from HepG2 (ENCLB017FXZ)

description:
https://www.encodeproject.org/experiments/ENCSR569ARC/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR569ARC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB017FXZ

value: ENCBS339RUH at ENCODE; https://www.encodeproject.org/ENCBS339RUH/


title: ChIP-seq from PC-3 (ENCLB651KLP)

description:
https://www.encodeproject.org/experiments/ENCSR566UMF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR566UMF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB651KLP
size range: 300-600
nucleic acid starting quantity: 30.43
nucleic acid starting quantity units: ng

source_name: Homo sapiens PC-3 immortalized cell line

extract_protocol: extraction method: see document

value: prostate cancer cell line

value: adult

value: 62 year

value: grade IV, adenocarcinoma

value: Bradley Bernstein, Broad

value: ENCBS451OVM at ENCODE; https://www.encodeproject.org/ENCBS451OVM/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from heart left ventricle (ENCLB087VEM)

description:
https://www.encodeproject.org/experiments/ENCSR526EXI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR526EXI
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB087VEM
size range: 200-600

source_name: Homo sapiens heart left ventricle tissue female adult (53 years)

value: Control

value: heart left ventricle

value: tissue

value: EnTEX:Heart - Left Ventricle

value: female

value: 53 year

value: ENCBS861XCF at ENCODE; https://www.encodeproject.org/ENCBS861XCF/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from Loucy (ENCLB952IZL)

description:
https://www.encodeproject.org/experiments/ENCSR566GSO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR566GSO
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB952IZL
size range: 200-600

source_name: Homo sapiens Loucy immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/eaafee87-23f3-4bb4-adb1-585af01db120/@@download/attachment/ChIP%20New%20General%20ChIP%20Protocol%20041510%20v05.pdf

value: Loucy

value: immortalized cell line

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from heart left ventricle (ENCLB774HVW)

description:
https://www.encodeproject.org/experiments/ENCSR526EXI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR526EXI
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB774HVW
size range: 200-600

value: Control

value: adult

value: Bradley Bernstein, Broad


title: ChIP-seq from neutrophil (ENCLB653CSW)

description:
https://www.encodeproject.org/experiments/ENCSR524RIH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR524RIH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR557RDB
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB653CSW
size range: 200-600

source_name: Homo sapiens neutrophil primary cell

value: neutrophil

value: primary cell

value: Neutrophils were isolated by centrifuging heparinized venous blood over Histopaque 1119 (Sigma-Aldrich) and subsequently over a discontinuous Percoll (Amersham Biosciences) gradient.  Cells provided by Max Planck Institute for Infection Biology, Berlin

value: unknown

value: not collected

value: ENCBS360EQL at ENCODE; https://www.encodeproject.org/ENCBS360EQL/

value: Derived from ENCODE donor ENCDO055UKA; https://www.encodeproject.org/ENCDO055UKA/


title: ChIP-seq from neural cell (ENCLB985CAR)

description:
https://www.encodeproject.org/experiments/ENCSR531QHM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR531QHM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB985CAR
size range: 200-600
nucleic acid starting quantity: 14.08
nucleic acid starting quantity units: ng

source_name: Homo sapiens neural in vitro differentiated cells male embryo

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: male

value: healthy

value: ENCBS737HIZ at ENCODE; https://www.encodeproject.org/ENCBS737HIZ/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from body of pancreas (ENCLB614HZS)

description:
https://www.encodeproject.org/experiments/ENCSR523JCB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR523JCB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR099LGH
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB614HZS
size range: 200-600

value: body of pancreas

value: tissue

value: 54 year

value: ENCBS209WBW at ENCODE; https://www.encodeproject.org/ENCBS209WBW/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from neutrophil (ENCLB492IVZ)

description:
https://www.encodeproject.org/experiments/ENCSR524RIH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR524RIH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR557RDB
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB492IVZ
size range: 200-600

value: neutrophil

value: primary cell

value: Neutrophils were isolated by centrifuging heparinized venous blood over Histopaque 1119 (Sigma-Aldrich) and subsequently over a discontinuous Percoll (Amersham Biosciences) gradient.  Cells provided by Max Planck Institute for Infection Biology, Berlin

value: Bradley Bernstein, Broad

value: ENCBS462VZJ at ENCODE; https://www.encodeproject.org/ENCBS462VZJ/


title: ChIP-seq from body of pancreas (ENCLB585JNL)

description:
https://www.encodeproject.org/experiments/ENCSR523JCB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR523JCB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR099LGH
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB585JNL
size range: 200-600

value: adult


title: ChIP-seq from HepG2 (ENCLB935ZSY)

description:
https://www.encodeproject.org/experiments/ENCSR562POI/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR562POI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB935ZSY

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-THAP11 fusion protein, N-terminal FLAG-THAP11 fusion protein

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS223TWX at ENCODE; https://www.encodeproject.org/ENCBS223TWX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB745QGM)

description:
https://www.encodeproject.org/experiments/ENCSR562POI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR562POI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB745QGM

value: male

value: ENCBS574TUM at ENCODE; https://www.encodeproject.org/ENCBS574TUM/


title: ChIP-seq from SK-N-SH (ENCLB208JNZ)

description:
https://www.encodeproject.org/experiments/ENCSR564IGJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR564IGJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB208JNZ
size range: 200-600

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: 4 year

value: female

value: ENCBS500EWH at ENCODE; https://www.encodeproject.org/ENCBS500EWH/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from fibroblast of arm (ENCLB944QRT)

description:
https://www.encodeproject.org/experiments/ENCSR562MOC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR562MOC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-12-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB944QRT
size range: 200-600
nucleic acid starting quantity: 20.5
nucleic acid starting quantity units: ng

source_name: Homo sapiens fibroblast of arm primary cell male adult (53 years)

value: fibroblast of arm

value: primary cell

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: Thomas Gingeras, CSHL

value: ENCBS372AAA at ENCODE; https://www.encodeproject.org/ENCBS372AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from body of pancreas (ENCLB591YZH)

description:
https://www.encodeproject.org/experiments/ENCSR520BIM/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR520BIM
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-07-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB591YZH
size range: 200-600

source_name: Homo sapiens body of pancreas tissue male adult (37 years)

value: body of pancreas

value: tissue

value: adult

value: male

value: 37 year

value: Bradley Bernstein, Broad

value: ENCBS869MHP at ENCODE; https://www.encodeproject.org/ENCBS869MHP/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from body of pancreas (ENCLB105BKL)

description:
https://www.encodeproject.org/experiments/ENCSR520BIM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR520BIM
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-07-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB105BKL
size range: 200-600
nucleic acid starting quantity: 48.8
nucleic acid starting quantity units: ng


title: ChIP-seq from gastrocnemius medialis (ENCLB846ONM)

description:
https://www.encodeproject.org/experiments/ENCSR519WQH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR519WQH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB846ONM
size range: 200-600
nucleic acid starting quantity: 12.32
nucleic acid starting quantity units: ng

source_name: Homo sapiens gastrocnemius medialis tissue male adult (37 years)

value: gastrocnemius medialis

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: ENCBS861DVK at ENCODE; https://www.encodeproject.org/ENCBS861DVK/


title: ChIP-seq from KMS-11 (ENCLB766GNA)

description:
https://www.encodeproject.org/experiments/ENCSR521AIV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR521AIV
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-11-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB766GNA
size range: 200-600

source_name: Homo sapiens KMS-11 immortalized cell line

value: immortalized cell line

value: multiple myeloma

value: female

value: 67 year

value: ENCBS682HMC at ENCODE; https://www.encodeproject.org/ENCBS682HMC/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from body of pancreas (ENCLB020GKP)

description:
https://www.encodeproject.org/experiments/ENCSR520BIM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR520BIM
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-07-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB020GKP
size range: 200-600
nucleic acid starting quantity: 48.8
nucleic acid starting quantity units: ng

value: body of pancreas

value: tissue


title: ChIP-seq from HepG2 (ENCLB705GRO)

description:
https://www.encodeproject.org/experiments/ENCSR560SEP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR560SEP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB705GRO

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-RXRB fusion protein, N-terminal FLAG-RXRB fusion protein

value: FLAG-RXRB

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS721GOB at ENCODE; https://www.encodeproject.org/ENCBS721GOB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from A673 (ENCLB933YRT)

description:
https://www.encodeproject.org/experiments/ENCSR521IZK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR521IZK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR196CXJ
encode release date: 2017-01-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB933YRT
size range: 200-600

value: immortalized cell line

value: Cell line is A673; this is a purchasable public domain cell type per Miguel Rivera, M.D.

value: unknown

value: Bradley Bernstein, Broad

value: ENCBS615MBV at ENCODE; https://www.encodeproject.org/ENCBS615MBV/

value: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/

value: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080


title: ChIP-seq from neural progenitor cell (ENCLB918MAC)

description:
https://www.encodeproject.org/experiments/ENCSR518LDN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR518LDN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-07-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB918MAC
size range: 200-600
nucleic acid starting quantity: 70.4
nucleic acid starting quantity units: ng

source_name: Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from gastrocnemius medialis (ENCLB056SKS)

description:
https://www.encodeproject.org/experiments/ENCSR519WQH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR519WQH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB056SKS
size range: 200-600
nucleic acid starting quantity: 6.666
nucleic acid starting quantity units: ng

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: adult

value: male

value: 37 year

value: ENCBS263ACC at ENCODE; https://www.encodeproject.org/ENCBS263ACC/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from neural progenitor cell (ENCLB622ASL)

description:
https://www.encodeproject.org/experiments/ENCSR518LDN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR518LDN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-07-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB622ASL
size range: 200-600

value: neural progenitor cell

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: Richard Myers, HAIB

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/


title: ChIP-seq from HepG2 (ENCLB370AZU)

description:
https://www.encodeproject.org/experiments/ENCSR560SEP/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR560SEP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB370AZU

value: FLAG-RXRB

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS711CCA at ENCODE; https://www.encodeproject.org/ENCBS711CCA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from PC-9 (ENCLB745XIC)

description:
https://www.encodeproject.org/experiments/ENCSR555TAX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR555TAX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB745XIC
size range: 200-600

source_name: Homo sapiens PC-9 immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS987JQH at ENCODE; https://www.encodeproject.org/ENCBS987JQH/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from PC-9 (ENCLB180SLM)

description:
https://www.encodeproject.org/experiments/ENCSR555TAX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR555TAX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB180SLM
size range: 200-600

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/


title: ChIP-seq from KMS-11 (ENCLB881BKR)

description:
https://www.encodeproject.org/experiments/ENCSR521AIV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR521AIV
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-11-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB881BKR
size range: 200-600
nucleic acid starting quantity: 18
nucleic acid starting quantity units: ng

value: multiple myeloma

value: adult

value: female

value: 67 year

value: ENCBS987CHP at ENCODE; https://www.encodeproject.org/ENCBS987CHP/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from HepG2 (ENCLB611TXK)

description:
https://www.encodeproject.org/experiments/ENCSR553QMC/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR553QMC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB611TXK

source_name: Homo sapiens HepG2 immortalized cell line

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS971ZFZ at ENCODE; https://www.encodeproject.org/ENCBS971ZFZ/


title: ChIP-seq from HepG2 (ENCLB370XEL)

description:
https://www.encodeproject.org/experiments/ENCSR553QMC/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR553QMC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB370XEL

value: ENCBS429APO at ENCODE; https://www.encodeproject.org/ENCBS429APO/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from SUDHL6 (ENCLB420QYR)

description:
https://www.encodeproject.org/experiments/ENCSR538KLU/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR538KLU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB420QYR
size range: 200-600

source_name: Homo sapiens SUDHL6 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: 43 year

value: Bradley Bernstein, Broad

value: ENCBS107PVI at ENCODE; https://www.encodeproject.org/ENCBS107PVI/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: ChIP-seq from Loucy (ENCLB361PHC)

description:
https://www.encodeproject.org/experiments/ENCSR543IKB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR543IKB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB361PHC
size range: 200-600

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: female

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from SUDHL6 (ENCLB549WJQ)

description:
https://www.encodeproject.org/experiments/ENCSR538KLU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR538KLU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB549WJQ
size range: 200-600

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/a47aaf7e-38f5-4326-914a-98991f61345a/@@download/attachment/Alon%27s%20SCN%20revised.pdf

value: immortalized cell line

value: male

value: large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma


title: ChIP-seq from hepatocyte (ENCLB094CKY)

description:
https://www.encodeproject.org/experiments/ENCSR507UDH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR507UDH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB094CKY
size range: 200-600
nucleic acid starting quantity: 118.25
nucleic acid starting quantity units: ng

source_name: Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: healthy

value: Richard Myers, HAIB

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from esophagus squamous epithelium (ENCLB593FJU)

description:
https://www.encodeproject.org/experiments/ENCSR508UPW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR508UPW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR652EPR
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB593FJU
size range: 200-600

source_name: Homo sapiens esophagus squamous epithelium tissue female adult (53 years)

value: esophagus squamous epithelium

value: tissue

value: EnTEX:Esophagus - Mucosa

value: adult

value: female

value: 53 year

value: Bradley Bernstein, Broad

value: ENCBS054JUC at ENCODE; https://www.encodeproject.org/ENCBS054JUC/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from gastroesophageal sphincter (ENCLB499QHS)

description:
https://www.encodeproject.org/experiments/ENCSR510NXV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR510NXV
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR178MWD
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB499QHS
size range: 200-600

source_name: Homo sapiens gastroesophageal sphincter tissue female adult (53 years)

value: gastroesophageal sphincter

value: EnTEX:Esophagus - Gastroesophageal Junction

value: ENCBS783BYN at ENCODE; https://www.encodeproject.org/ENCBS783BYN/


title: ChIP-seq from gastroesophageal sphincter (ENCLB162TZY)

description:
https://www.encodeproject.org/experiments/ENCSR510NXV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR510NXV
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR178MWD
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB162TZY
size range: 200-600


title: ChIP-seq from smooth muscle cell (ENCLB169JVM)

description:
https://www.encodeproject.org/experiments/ENCSR515PKY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR515PKY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB169JVM
size range: 200-600

source_name: Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9

value: smooth muscle cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: ENCBS780PCJ at ENCODE; https://www.encodeproject.org/ENCBS780PCJ/


title: ChIP-seq from esophagus squamous epithelium (ENCLB174JYZ)

description:
https://www.encodeproject.org/experiments/ENCSR508UPW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR508UPW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR652EPR
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB174JYZ
size range: 200-600

value: esophagus squamous epithelium

value: tissue


title: ChIP-seq from H9 (ENCLB510GSI)

description:
https://www.encodeproject.org/experiments/ENCSR516KSY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR516KSY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR625CEM
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB510GSI
size range: 200-600
nucleic acid starting quantity: 127
nucleic acid starting quantity units: ng

source_name: Homo sapiens H9 stem cell female embryo (5 days) stably expressing C-terminal eGFP-HES5 fusion protein

value: stem cell

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter

value: healthy

value: ENCBS769EPD at ENCODE; https://www.encodeproject.org/ENCBS769EPD/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_9773; http://web.expasy.org/cellosaurus/CVCL_9773


title: ChIP-seq from smooth muscle cell (ENCLB220GCN)

description:
https://www.encodeproject.org/experiments/ENCSR515PKY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR515PKY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB220GCN
size range: 200-600
nucleic acid starting quantity: 177
nucleic acid starting quantity units: ng

value: female

value: Richard Myers, HAIB

value: ENCBS899TTJ at ENCODE; https://www.encodeproject.org/ENCBS899TTJ/


title: ChIP-seq from hepatocyte (ENCLB640DXN)

description:
https://www.encodeproject.org/experiments/ENCSR507UDH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR507UDH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB640DXN
size range: 200-600
nucleic acid starting quantity: 96.14
nucleic acid starting quantity units: ng

value: hepatocyte

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/


title: ChIP-seq from induced pluripotent stem cell (ENCLB325EHR)

description:
https://www.encodeproject.org/experiments/ENCSR534VHI/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on PGP1 iPSC
experiment encode accession: ENCSR534VHI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR447FVP, ENCSR655HDE
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB325EHR

source_name: Homo sapiens induced pluripotent stem cell line male adult (53 years) derived from fibroblast of arm

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS373AAA at ENCODE; https://www.encodeproject.org/ENCBS373AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from induced pluripotent stem cell (ENCLB788PPK)

description:
https://www.encodeproject.org/experiments/ENCSR534VHI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on PGP1 iPSC
experiment encode accession: ENCSR534VHI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR447FVP, ENCSR655HDE
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB788PPK

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/


title: ChIP-seq from hepatocyte (ENCLB798HDH)

description:
https://www.encodeproject.org/experiments/ENCSR507UDH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR507UDH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB798HDH
size range: 200-600

value: in vitro differentiated cells

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from HepG2 (ENCLB190WGO)

description:
https://www.encodeproject.org/experiments/ENCSR531VIJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR531VIJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB190WGO

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-MIER3 fusion protein, C-terminal FLAG-MIER3 fusion protein

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS126SWO at ENCODE; https://www.encodeproject.org/ENCBS126SWO/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB508ODW)

description:
https://www.encodeproject.org/experiments/ENCSR531VIJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR531VIJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB508ODW

value: male

value: ENCBS190DSQ at ENCODE; https://www.encodeproject.org/ENCBS190DSQ/


title: ChIP-seq from heart left ventricle (ENCLB574PHY)

description:
https://www.encodeproject.org/experiments/ENCSR500ZGF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR500ZGF
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR526EXI
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB574PHY
size range: 200-600

source_name: Homo sapiens heart left ventricle tissue female adult (53 years)

value: heart left ventricle

value: tissue

value: EnTEX:Heart - Left Ventricle

value: adult

value: 53 year

value: Bradley Bernstein, Broad

value: ENCBS861XCF at ENCODE; https://www.encodeproject.org/ENCBS861XCF/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from heart left ventricle (ENCLB738MIE)

description:
https://www.encodeproject.org/experiments/ENCSR500ZGF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR500ZGF
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR526EXI
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB738MIE
size range: 200-600

value: female


title: ChIP-seq from KMS-11 (ENCLB021LXI)

description:
https://www.encodeproject.org/experiments/ENCSR499RMZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR499RMZ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-11-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB021LXI
size range: 200-600

value: immortalized cell line

value: multiple myeloma

value: 67 year

value: ENCBS682HMC at ENCODE; https://www.encodeproject.org/ENCBS682HMC/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from KMS-11 (ENCLB832BZH)

description:
https://www.encodeproject.org/experiments/ENCSR499RMZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR499RMZ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-11-01
lab: Bradley Bernstein, Broad
library encode accession: ENCLB832BZH
size range: 200-600
nucleic acid starting quantity: 47
nucleic acid starting quantity units: ng

value: ENCBS987CHP at ENCODE; https://www.encodeproject.org/ENCBS987CHP/


title: ChIP-seq from HepG2 (ENCLB273ADT)

description:
https://www.encodeproject.org/experiments/ENCSR528PSI/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR528PSI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-10-12
lab: Richard Myers, HAIB
library encode accession: ENCLB273ADT

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-HLF fusion protein, C-terminal FLAG-HLF fusion protein

value: FLAG-HLF

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS374RZL at ENCODE; https://www.encodeproject.org/ENCBS374RZL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB021ZZQ)

description:
https://www.encodeproject.org/experiments/ENCSR528PSI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR528PSI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-10-12
lab: Richard Myers, HAIB
library encode accession: ENCLB021ZZQ

value: ENCBS978UPK at ENCODE; https://www.encodeproject.org/ENCBS978UPK/


title: ChIP-seq from liver (ENCLB802SIR)

description:
https://www.encodeproject.org/experiments/ENCSR521IID/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on MAX-human
experiment encode accession: ENCSR521IID
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB802SIR

source_name: Homo sapiens liver tissue male adult (32 years)

value: MAX

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from PC-9 (ENCLB936PFP)

description:
https://www.encodeproject.org/experiments/ENCSR513KNS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR513KNS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB936PFP
size range: 200-600

value: immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS987JQH at ENCODE; https://www.encodeproject.org/ENCBS987JQH/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from HepG2 (ENCLB451XMW)

description:
https://www.encodeproject.org/experiments/ENCSR524VNV/
***************
biological replicate number: 11
technical replicate number: 2
description: Reverse Crosslink Control ChIP-seq on human HepG2 (fragmentation date 06-18-14)
experiment encode accession: ENCSR524VNV
assay title: ChIP-seq
encode release date: 2016-01-08
lab: Richard Myers, HAIB
library encode accession: ENCLB451XMW
size range: 100-500

value: Control

value: HepG2, hepatocellular carcinoma

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from smooth muscle cell (ENCLB637MQA)

description:
https://www.encodeproject.org/experiments/ENCSR493FIV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR493FIV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-11-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB637MQA
size range: 200-600
nucleic acid starting quantity: 25.0
nucleic acid starting quantity units: ng

value: smooth muscle cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS899TTJ at ENCODE; https://www.encodeproject.org/ENCBS899TTJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from bipolar spindle neuron (ENCLB381RRV)

description:
https://www.encodeproject.org/experiments/ENCSR484PTR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR484PTR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB381RRV
size range: 200-600

source_name: Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell

value: bipolar spindle neuron

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from esophagus muscularis mucosa (ENCLB497TEJ)

description:
https://www.encodeproject.org/experiments/ENCSR474WLZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR474WLZ
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB497TEJ
size range: 200-600

source_name: Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)

value: Control

value: esophagus muscularis mucosa

value: tissue

value: EnTEX:Esophagus - Muscularis

value: Bradley Bernstein, Broad

value: ENCBS071FUE at ENCODE; https://www.encodeproject.org/ENCBS071FUE/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from ACC112 (ENCLB247XXA)

description:
https://www.encodeproject.org/experiments/ENCSR475NLR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR475NLR
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR836XKP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB247XXA
size range: 200-600

source_name: Homo sapiens ACC112 immortalized cell line

value: immortalized cell line

value: adenoid cystic carcinoma cell line supplied by Lurdes Queimado, M.D., Ph.D.Phone:405-271-4232 (office); 405-271-4279 (lab); cells immortalized by infection with a retrovirus expressing HPV16 E6 and E7

value: 70 year

value: submaxillar tumor

value: ENCBS726UUU at ENCODE; https://www.encodeproject.org/ENCBS726UUU/

value: Derived from ENCODE donor ENCDO085ZKK; https://www.encodeproject.org/ENCDO085ZKK/

value: ENCODE dbxrefs Cellosaurus CVCL_Y492; http://web.expasy.org/cellosaurus/CVCL_Y492


title: ChIP-seq from esophagus muscularis mucosa (ENCLB520OCT)

description:
https://www.encodeproject.org/experiments/ENCSR474WLZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR474WLZ
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB520OCT
size range: 200-600

value: adult

value: female

value: 53 year


title: ChIP-seq from liver (ENCLB188XWI)

description:
https://www.encodeproject.org/experiments/ENCSR521IID/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on MAX-human
experiment encode accession: ENCSR521IID
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB188XWI

value: MAX

value: liver

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from KMS-11 (ENCLB057HBI)

description:
https://www.encodeproject.org/experiments/ENCSR474VGQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR474VGQ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2017-01-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB057HBI
size range: 200-600
nucleic acid starting quantity: 445
nucleic acid starting quantity units: ng

source_name: Homo sapiens KMS-11 immortalized cell line

value: immortalized cell line

value: multiple myeloma

value: 67 year

value: Bradley Bernstein, Broad

value: ENCBS987CHP at ENCODE; https://www.encodeproject.org/ENCBS987CHP/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from A673 (ENCLB042JCS)

description:
https://www.encodeproject.org/experiments/ENCSR521IZK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR521IZK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR196CXJ
encode release date: 2017-01-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB042JCS
size range: 200-600

source_name: Homo sapiens A673 immortalized cell line

extract_protocol: not provided

value: Cell line is A673; this is a purchasable public domain cell type per Miguel Rivera, M.D.

value: unknown

value: female

value: 15 year

value: ENCBS385OLC at ENCODE; https://www.encodeproject.org/ENCBS385OLC/

value: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/

value: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080


title: ChIP-seq from HCT116 (ENCLB246LQL)

description:
https://www.encodeproject.org/experiments/ENCSR474DOV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR474DOV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198WIH
encode release date: 2017-01-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB246LQL
size range: 200-600

source_name: Homo sapiens HCT116 immortalized cell line

value: cells obtained from ATCC

value: male

value: colorectal carcinoma

value: ENCBS847SOB at ENCODE; https://www.encodeproject.org/ENCBS847SOB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/

value: ENCODE dbxrefs Cellosaurus CVCL_0291; http://web.expasy.org/cellosaurus/CVCL_0291

value: ATCC sample source; http://www.atcc.org/products/all/CCL-247.aspx#357C3571006A4259B64650D34DF19048


title: ChIP-seq from bipolar spindle neuron (ENCLB671FUW)

description:
https://www.encodeproject.org/experiments/ENCSR484PTR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR484PTR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB671FUW
size range: 200-600

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS374AAA at ENCODE; https://www.encodeproject.org/ENCBS374AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from KMS-11 (ENCLB047HAU)

description:
https://www.encodeproject.org/experiments/ENCSR474VGQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR474VGQ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2017-01-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB047HAU
size range: 200-600

value: immortalized cell line

value: multiple myeloma

value: female

value: 67 year

value: Bradley Bernstein, Broad

value: ENCBS682HMC at ENCODE; https://www.encodeproject.org/ENCBS682HMC/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from PC-9 (ENCLB872UZU)

description:
https://www.encodeproject.org/experiments/ENCSR521GRK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR521GRK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB872UZU
size range: 200-600

source_name: Homo sapiens PC-9 immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from PC-9 (ENCLB544ZGY)

description:
https://www.encodeproject.org/experiments/ENCSR521GRK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR521GRK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB544ZGY
size range: 200-600

value: ENCBS987JQH at ENCODE; https://www.encodeproject.org/ENCBS987JQH/


title: ChIP-seq from HepG2 (ENCLB881VQL)

description:
https://www.encodeproject.org/experiments/ENCSR518WPL/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR518WPL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR237LVA, ENCSR524VNV
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB881VQL

source_name: Homo sapiens HepG2 immortalized cell line

value: A standard Myers lab growth of HepG2, hepatocellular carcinoma

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS515IJA at ENCODE; https://www.encodeproject.org/ENCBS515IJA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from MCF-7 (ENCLB734OAY)

description:
https://www.encodeproject.org/experiments/ENCSR511PAE/
***************
biological replicate number: 7
technical replicate number: 1
description: Reverse Crosslink ControlChIP-seq on human MCF-7 (fragmentation date 03-05-14)
experiment encode accession: ENCSR511PAE
assay title: ChIP-seq
encode release date: 2015-11-13
lab: Richard Myers, HAIB
library encode accession: ENCLB734OAY
size range: 100-500

source_name: Homo sapiens MCF-7 immortalized cell line

value: Control

value: immortalized cell line

value: MCF-7, mammary gland adenocarcinoma

value: adult

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS530DHL at ENCODE; https://www.encodeproject.org/ENCBS530DHL/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from liver (ENCLB915FOF)

description:
https://www.encodeproject.org/experiments/ENCSR516HUP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on ZBTB33-human
experiment encode accession: ENCSR516HUP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2016-09-19
lab: Richard Myers, HAIB
library encode accession: ENCLB915FOF

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from HCT116 (ENCLB553DGW)

description:
https://www.encodeproject.org/experiments/ENCSR474DOV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR474DOV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198WIH
encode release date: 2017-01-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB553DGW
size range: 200-600

value: immortalized cell line

value: cells obtained from ATCC

value: unknown

value: colorectal carcinoma

value: Bradley Bernstein, Broad

value: ENCBS494OPB at ENCODE; https://www.encodeproject.org/ENCBS494OPB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/

value: ENCODE dbxrefs Cellosaurus CVCL_0291; http://web.expasy.org/cellosaurus/CVCL_0291

value: ATCC sample source; http://www.atcc.org/products/all/CCL-247.aspx#357C3571006A4259B64650D34DF19048


title: ChIP-seq from neural cell (ENCLB795NOW)

description:
https://www.encodeproject.org/experiments/ENCSR531QHM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR531QHM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB795NOW
size range: 300-800

source_name: Homo sapiens neural in vitro differentiated cells male embryo

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: healthy

value: ENCBS504GFW at ENCODE; https://www.encodeproject.org/ENCBS504GFW/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from HepG2 (ENCLB520HOO)

description:
https://www.encodeproject.org/experiments/ENCSR502GAX/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR502GAX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB520HOO

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-ZNF652 fusion protein, C-terminal FLAG-ZNF652 fusion protein

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS146STP at ENCODE; https://www.encodeproject.org/ENCBS146STP/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from liver (ENCLB477KYS)

description:
https://www.encodeproject.org/experiments/ENCSR516HUP/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on ZBTB33-human
experiment encode accession: ENCSR516HUP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2016-09-19
lab: Richard Myers, HAIB
library encode accession: ENCLB477KYS

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from H9 (ENCLB553JHB)

description:
https://www.encodeproject.org/experiments/ENCSR516KSY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR516KSY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR625CEM
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB553JHB
size range: 300-1000

source_name: Homo sapiens H9 stem cell female embryo (5 days) stably expressing C-terminal eGFP-HES5 fusion protein

value: stem cell

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter, Cells were cultured on mitotically inactivated mouse embryonic fibroblasts (MEFs) (Globalstem). Undifferentiated ES cells were maintained in medium containing DMEM/F12, 20% KSR, 1mM Glutamine, 1% Penicillin/Streptomycin, non essential amino acids and beta-mercaptoethanol. Undifferentiated ES cells were purified with pluripotency markers Tra-1-60 and PE-conjugated SSEA-3 (BD Pharmingen).

value: embryonic

value: female

value: 5 day

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS703ZDS at ENCODE; https://www.encodeproject.org/ENCBS703ZDS/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_9773; http://web.expasy.org/cellosaurus/CVCL_9773


title: ChIP-seq from smooth muscle cell (ENCLB367GKS)

description:
https://www.encodeproject.org/experiments/ENCSR493FIV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR493FIV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-11-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB367GKS
size range: 200-600

source_name: Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9

value: smooth muscle cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: Richard Myers, HAIB

value: ENCBS780PCJ at ENCODE; https://www.encodeproject.org/ENCBS780PCJ/


title: ChIP-seq from PC-9 (ENCLB169IMT)

description:
https://www.encodeproject.org/experiments/ENCSR513KNS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR513KNS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB169IMT
size range: 200-600

value: immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from bipolar spindle neuron (ENCLB471UYK)

description:
https://www.encodeproject.org/experiments/ENCSR472SEY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR472SEY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-05-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB471UYK
size range: 200-600

value: bipolar spindle neuron

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS374AAA at ENCODE; https://www.encodeproject.org/ENCBS374AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from bipolar spindle neuron (ENCLB617PES)

description:
https://www.encodeproject.org/experiments/ENCSR472SEY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR472SEY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-05-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB617PES
size range: 200-600

value: in vitro differentiated cells

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/


title: ChIP-seq from ACC112 (ENCLB556KZE)

description:
https://www.encodeproject.org/experiments/ENCSR475NLR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR475NLR
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR836XKP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB556KZE
size range: 200-600

value: immortalized cell line

value: adenoid cystic carcinoma cell line supplied by Lurdes Queimado, M.D., Ph.D.Phone:405-271-4232 (office); 405-271-4279 (lab); cells immortalized by infection with a retrovirus expressing HPV16 E6 and E7

value: 70 year

value: submaxillar tumor

value: Bradley Bernstein, Broad

value: ENCBS827JIC at ENCODE; https://www.encodeproject.org/ENCBS827JIC/

value: Derived from ENCODE donor ENCDO085ZKK; https://www.encodeproject.org/ENCDO085ZKK/

value: ENCODE dbxrefs Cellosaurus CVCL_Y492; http://web.expasy.org/cellosaurus/CVCL_Y492


title: ChIP-seq from GM12878 (ENCLB543BSE)

description:
https://www.encodeproject.org/experiments/ENCSR501DKS/
***************
biological replicate number: 1
technical replicate number: 1
description: TCF7 ChIP-seq on human GM12878
experiment encode accession: ENCSR501DKS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR237VSG, ENCSR360XQV
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB543BSE

source_name: Homo sapiens GM12878 immortalized cell line

extract_protocol:
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

value: GM12878, B-lymphocyte, lymphoblastoid

value: female

value: unknown

value: Richard Myers, HAIB

value: ENCBS845TXY at ENCODE; https://www.encodeproject.org/ENCBS845TXY/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878


title: ChIP-seq from DOHH2 (ENCLB998GPX)

description:
https://www.encodeproject.org/experiments/ENCSR463DSJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR463DSJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR742WWB
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB998GPX
size range: 200-600

source_name: Homo sapiens DOHH2 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

value: established from the pleural effusion of a 60-year-old man with refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma in 1990

value: 60 year

value: adult

value: male

value: ENCBS100ZVH at ENCODE; https://www.encodeproject.org/ENCBS100ZVH/

value: Derived from ENCODE donor ENCDO352AAA; https://www.encodeproject.org/ENCDO352AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1179; http://web.expasy.org/cellosaurus/CVCL_1179


title: ChIP-seq from Karpas-422 (ENCLB970BPP)

description:
https://www.encodeproject.org/experiments/ENCSR473TDG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR473TDG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR367UDO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB970BPP
size range: 200-600

source_name: Homo sapiens Karpas-422 immortalized cell line

value: immortalized cell line

value: Karpas422- Human B cell non-Hodgkin lymphoma

value: 73 year

value: human B cell non-Hodgkin's lymphoma

value: Bradley Bernstein, Broad

value: ENCBS171YVY at ENCODE; https://www.encodeproject.org/ENCBS171YVY/

value: Derived from ENCODE donor ENCDO354AAA; https://www.encodeproject.org/ENCDO354AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1325; http://web.expasy.org/cellosaurus/CVCL_1325


title: ChIP-seq from HepG2 (ENCLB400YSA)

description:
https://www.encodeproject.org/experiments/ENCSR518WPL/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR518WPL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR237LVA, ENCSR524VNV
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB400YSA

value: HepG2, hepatocellular carcinoma

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from Karpas-422 (ENCLB823MUF)

description:
https://www.encodeproject.org/experiments/ENCSR473TDG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR473TDG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR367UDO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB823MUF
size range: 200-600

value: immortalized cell line

value: adult

value: female

value: ENCBS301UOD at ENCODE; https://www.encodeproject.org/ENCBS301UOD/


title: ChIP-seq from DOHH2 (ENCLB314FAR)

description:
https://www.encodeproject.org/experiments/ENCSR463DSJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR463DSJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR742WWB
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB314FAR
size range: 200-600

value: established from the pleural effusion of a 60-year-old man with refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma in 1990

value: male

value: 60 year

value: Bradley Bernstein, Broad

value: ENCBS898JGF at ENCODE; https://www.encodeproject.org/ENCBS898JGF/

value: Derived from ENCODE donor ENCDO352AAA; https://www.encodeproject.org/ENCDO352AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1179; http://web.expasy.org/cellosaurus/CVCL_1179


title: ChIP-seq from HepG2 (ENCLB468THC)

description:
https://www.encodeproject.org/experiments/ENCSR500WXT/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR500WXT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB468THC

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-RARA fusion protein, C-terminal FLAG-RARA fusion protein

value: FLAG-RARA

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS294XYB at ENCODE; https://www.encodeproject.org/ENCBS294XYB/


title: ChIP-seq from HepG2 (ENCLB225NHS)

description:
https://www.encodeproject.org/experiments/ENCSR500WXT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR500WXT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB225NHS

value: Richard Myers, HAIB

value: ENCBS994VNP at ENCODE; https://www.encodeproject.org/ENCBS994VNP/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from MM.1S (ENCLB224UVI)

description:
https://www.encodeproject.org/experiments/ENCSR461LTR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR461LTR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB224UVI
size range: 300-600
nucleic acid starting quantity: 1501.2
nucleic acid starting quantity units: ng

source_name: Homo sapiens MM.1S immortalized cell line

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS205VYW at ENCODE; https://www.encodeproject.org/ENCBS205VYW/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from HepG2 (ENCLB615NIO)

description:
https://www.encodeproject.org/experiments/ENCSR502GAX/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR502GAX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB615NIO

value: male

value: ENCBS307XHH at ENCODE; https://www.encodeproject.org/ENCBS307XHH/


title: ChIP-seq from MM.1S (ENCLB792FEB)

description:
https://www.encodeproject.org/experiments/ENCSR461LTR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR461LTR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB792FEB
size range: 300-600
nucleic acid starting quantity: 714
nucleic acid starting quantity units: ng

value: Bradley Bernstein, Broad

value: ENCBS981ZAE at ENCODE; https://www.encodeproject.org/ENCBS981ZAE/


title: ChIP-seq from GM12878 (ENCLB259VMU)

description:
https://www.encodeproject.org/experiments/ENCSR501DKS/
***************
biological replicate number: 2
technical replicate number: 1
description: TCF7 ChIP-seq on human GM12878
experiment encode accession: ENCSR501DKS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR237VSG, ENCSR360XQV
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB259VMU

value: GM12878, B-lymphocyte, lymphoblastoid.

value: unknown

value: ENCBS083XJQ at ENCODE; https://www.encodeproject.org/ENCBS083XJQ/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM12878&Product=CC


title: ChIP-seq from PC-9 (ENCLB476WNE)

description:
https://www.encodeproject.org/experiments/ENCSR491WAP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR491WAP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2017-01-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB476WNE
size range: 200-600

value: immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: not collected

value: ENCBS987JQH at ENCODE; https://www.encodeproject.org/ENCBS987JQH/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260