title: flg22 9 hrs; ein2-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 333

source_name: flg22 9 hrs; ein2-1 sid2-2

value: 9 hrs

value: ATCCT


title: flg22 9 hrs; dde2-2 ein2-1 pad4-1; rep3

status: Public on Mar 01 2017

type: SRA

city: St Paul

first: Fumiaki

last: Katagiri

state: Minnesota

address: 1500 Gortner Ave

department: Dept of Plant and Microbial Biology

country: USA

institute: Univ of Minnesota

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 335

library_source: transcriptomic

data_processing:
quality filter (during lane de-multiplexing): reads with any undetermined bases (N) in the barcode were removed
barcode trimming: internal barcodes were trimmed off of sequence reads
artifacts filtering: reads that resemble seqeuncing artifacts were removed using the artifacts filter in the fastx toolkit
read mapping: reads were mapped to TAIR10 transcripts using bowtie version bowtie-0.12.8
counting mapped reads: reads mapping to the forward strand of transcript(s) from a single gene were tallied (raw counts)
sample scaling: A scaling percentile normalization was applied to the raw counts of each sample: raw transcript counts at the 90th percentile of sample count values were scaled to match to the largest 90th percentile value, 300 counts, across all samples.
data transformation: The data were transformed to produce approximately homoscedastic data values, using the transformation log2 (scaled counts+79) - log2 (79). These transformed, scaled data with are referred to as normalized data in the following.
data correction: Normalized data were corrected for statistical artifacts using a mixed linear model for each gene individually: normalized data ~ genotype:time+(1|machine/lane)+(1│barcode)+(1|replicate). The normalized and corrected data are called transcript expression levels here.
Genome_build: TAIR10
Supplementary_files_format_and_content: raw counts for reads mapped to TAIR10 genes

molecule: total RNA

organism: Arabidopsis thaliana

source_name: flg22 9 hrs; dde2-2 ein2-1 pad4-1

growth_protocol: Plants were grown under a 12hr photoperiod in a controlled environment at 22°C and 75% relative humidity.

extract_protocol:
Total RNA extraction
Stranded mRNA Tag-Seq libraries were prepared as previously described, BMC Genomics. 2014 May 6;15:341. doi: 10.1186/1471-2164-15-341.

treatment_protocol: 3 leaves (leaf stages 7-9) of a single plant of each genotype from 31-32 days-old plants were syringe-inoculated with a 1 μM solution of flg22, and harvested at the indicated time after treatment. Leaves of plants from the same genotype and time point sampling in four independent experiments were pooled into a single biological replicate.

tag: genotype/variation

value: dde2-2 ein2-1 pad4-1

tag: concise genotype name

value: jepS

tag: hrs after flg22 infiltration

tag: tissue

value: leaf

tag: barcode

value: CGAGAT

tag: gaiix lane

tag: machine location

value: tsl


title: flg22 5 hrs; pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 310

source_name: flg22 5 hrs; pad4-1

value: JEpS

value: 5 hrs

value: AGCT


title: flg22 5 hrs; sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 311

source_name: flg22 5 hrs; sid2-2

value: JEPs

value: TCGT


title: flg22 5 hrs; dde2-2 ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 312

source_name: flg22 5 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: CGGT


title: flg22 3 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 305

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: 3 hrs

value: CAGAGT


title: flg22 5 hrs; ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 309

source_name: flg22 5 hrs; ein2-1

value: JePS

value: TGTGCGAT


title: flg22 3 hrs; fls2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 306

source_name: flg22 3 hrs; fls2

value: leaf

value: CATACGT


title: flg22 3 hrs; ein2-1 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 304

source_name: flg22 3 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: GACACT

value: tsl


title: flg22 3 hrs; dde2-2 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 303

source_name: flg22 3 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: CGAGAT


title: flg22 5 hrs; dde2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 308

source_name: flg22 5 hrs; dde2-2

value: jEPS

value: 5 hrs

value: AACAGAGT


title: flg22 3 hrs; dde2-2 ein2-1 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 301

source_name: flg22 3 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: ATCCT


title: flg22 3 hrs; dde2-2 ein2-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 302

source_name: flg22 3 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: 3 hrs

value: TTGGAT


title: flg22 3 hrs; pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 300

source_name: flg22 3 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: leaf

value: ACTGT


title: flg22 3 hrs; dde2-2 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 296

source_name: flg22 3 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: CGGT

value: tsl


title: flg22 3 hrs; ein2-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 299

source_name: flg22 3 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: GTACT


title: flg22 3 hrs; Col-0; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 290

source_name: flg22 3 hrs; Col-0

value: JEPS

value: CATACGT


title: flg22 2 hrs; fls2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 289

source_name: flg22 2 hrs; fls2

value: 2 hrs

value: CAGAGT


title: flg22 3 hrs; dde2-2 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 297

source_name: flg22 3 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: 3 hrs

value: GCAT


title: flg22 3 hrs; ein2-1 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 298

source_name: flg22 3 hrs; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: leaf

value: GCTCT


title: flg22 2 hrs; dde2-2 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 286

source_name: flg22 2 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: TTGGAT


title: flg22 2 hrs; ein2-1 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 287

source_name: flg22 2 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: CGAGAT

value: tsl


title: flg22 3 hrs; dde2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 291

source_name: flg22 3 hrs; dde2-2

value: jEPS

value: TTGCGCT


title: flg22 3 hrs; dde2-2 ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 295

source_name: flg22 3 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: TCGT


title: flg22 2 hrs; ein2-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 282

source_name: flg22 2 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: 2 hrs


title: flg22 2 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 288

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: leaf

value: GACACT


title: flg22 2 hrs; dde2-2 ein2-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 285

source_name: flg22 2 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: ATCCT


title: flg22 2 hrs; dde2-2 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 279

source_name: flg22 2 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS


title: flg22 2 hrs; pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 283

source_name: flg22 2 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: GTACT

value: tsl


title: flg22 2 hrs; dde2-2 ein2-1 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 284

source_name: flg22 2 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: ACTGT


title: flg22 2 hrs; dde2-2 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 280

source_name: flg22 2 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: 2 hrs

value: CGGT


title: flg22 2 hrs; dde2-2 ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 278

source_name: flg22 2 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: leaf

value: AGCT


title: flg22 2 hrs; pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 276

source_name: flg22 2 hrs; pad4-1

value: JEpS

value: GCAT


title: flg22 2 hrs; dde2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 274

source_name: flg22 2 hrs; dde2-2

value: jEPS

value: TCGT


title: flg22 2 hrs; sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 277

source_name: flg22 2 hrs; sid2-2

value: JEPs

value: GCTCT


title: flg22 3 hrs; ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 292

source_name: flg22 3 hrs; ein2-1

value: JePS

value: 3 hrs

value: AACAGAGT

value: tsl


title: flg22 2 hrs; Col-0; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 273

source_name: flg22 2 hrs; Col-0

value: JEPS


title: flg22 1 hr; dde2-2 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 269

source_name: flg22 1 hr; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: 1 hr

value: CATACGT


title: flg22 1 hr; fls2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 272

source_name: flg22 1 hr; fls2

value: leaf

value: TGTGCGAT


title: flg22 3 hrs; sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 294

source_name: flg22 3 hrs; sid2-2

value: AGCT


title: flg22 1 hr; dde2-2 ein2-1 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 267

source_name: flg22 1 hr; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: GACACT


title: flg22 1 hr; dde2-2 ein2-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 268

source_name: flg22 1 hr; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: CAGAGT


title: flg22 1 hr; ein2-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 265

source_name: flg22 1 hr; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: TTGGAT


title: flg22 1 hr; ein2-1 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 264

source_name: flg22 1 hr; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: ATCCT

value: tsl


title: flg22 1 hr; dde2-2 ein2-1 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 271

source_name: flg22 1 hr; dde2-2 ein2-1 pad4-1 sid2-2

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: 1 hr

value: AACAGAGT


title: flg22 1 hr; dde2-2 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 263

source_name: flg22 1 hr; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: leaf

value: ACTGT


title: flg22 1 hr; pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 266

source_name: flg22 1 hr; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: CGAGAT


title: flg22 2 hrs; ein2-1 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 281

source_name: flg22 2 hrs; ein2-1 pad4-1

value: 2 hrs

value: GCAT


title: flg22 3 hrs; pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 293

source_name: flg22 3 hrs; pad4-1

value: JEpS

value: 3 hrs

value: TGTGCGAT


title: flg22 1 hr; dde2-2 ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 261

source_name: flg22 1 hr; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: GCTCT

value: tsl


title: flg22 1 hr; dde2-2 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 262

source_name: flg22 1 hr; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: 1 hr

value: GTACT


title: flg22 2 hrs; ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 275

source_name: flg22 2 hrs; ein2-1

value: JePS

value: leaf

value: CGGT


title: flg22 1 hr; dde2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 257

source_name: flg22 1 hr; dde2-2

value: jEPS

value: AGCT


title: flg22 1 hr; Col-0; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 256

source_name: flg22 1 hr; Col-0

value: JEPS


title: flg22 1 hr; pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 259

source_name: flg22 1 hr; pad4-1

value: JEpS


title: flg22 1 hr; sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 260

source_name: flg22 1 hr; sid2-2

value: JEPs

value: GCAT


title: flg22 0 hrs; dde2-2 ein2-1 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 250

source_name: flg22 0 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: 0 hrs

value: CGAGAT


title: flg22 0 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 254

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: TTGCGCT

value: tsl


title: flg22 1 hr; ein2-1 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 270

source_name: flg22 1 hr; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: 1 hr


title: flg22 0 hrs; ein2-1 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 253

source_name: flg22 0 hrs; ein2-1 pad4-1 sid2-2

value: leaf

value: CATACGT


title: flg22 0 hrs; dde2-2 pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 252

source_name: flg22 0 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: CAGAGT


title: flg22 0 hrs; dde2-2 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 246

source_name: flg22 0 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: GTACT


title: flg22 0 hrs; dde2-2 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 245

source_name: flg22 0 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: 0 hrs

value: GCTCT


title: flg22 0 hrs; dde2-2 ein2-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 251

source_name: flg22 0 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: GACACT


title: flg22 0 hrs; ein2-1 pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 247

source_name: flg22 0 hrs; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: ACTGT

value: tsl


title: flg22 0 hrs; ein2-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 248

source_name: flg22 0 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: leaf

value: ATCCT


title: flg22 1 hr; ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 258

source_name: flg22 1 hr; ein2-1

value: JePS

value: 1 hr

value: TCGT


title: flg22 0 hrs; pad4-1 sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 249

source_name: flg22 0 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: TTGGAT


title: flg22 0 hrs; sid2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 243

source_name: flg22 0 hrs; sid2-2

value: JEPs

value: 0 hrs

value: CGGT


title: flg22 0 hrs; dde2-2 ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 244

source_name: flg22 0 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: GCAT


title: flg22 0 hrs; Col-0; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 239

source_name: flg22 0 hrs; Col-0

value: JEPS

value: AACAGAGT

value: tsl


title: flg22 18 hrs; fls2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 238

source_name: flg22 18 hrs; fls2

value: 18 hrs

value: leaf

value: TTGCGCT


title: flg22 0 hrs; fls2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 255

source_name: flg22 0 hrs; fls2


title: flg22 18 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 237

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: CATACGT


title: flg22 18 hrs; dde2-2 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 235

source_name: flg22 18 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: GACACT


title: flg22 0 hrs; dde2-2; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 240

source_name: flg22 0 hrs; dde2-2

value: jEPS

value: 0 hrs

value: TGTGCGAT


title: flg22 18 hrs; ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 236

source_name: flg22 18 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: CAGAGT


title: flg22 0 hrs; pad4-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 242

source_name: flg22 0 hrs; pad4-1

value: JEpS

value: TCGT


title: flg22 18 hrs; dde2-2 ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 233

source_name: flg22 18 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: 18 hrs

value: TTGGAT

value: tsl


title: flg22 18 hrs; pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 232

source_name: flg22 18 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: leaf

value: ATCCT


title: MEFs DAPT 3

city: Dallas

first: Eric

middle: N

last: Olson

state: TX

address: 6000 Harry Hines Blvd.

department: Molecular Biology

institute: University of Texas Southwestern Medical Center at Dallas

data_processing:
QC was done using NGSToolkit v2.3.3 with default parameters
Fitlered reads were mapping to mm10 using tophat2 v2.0.0
Reads count were obtained using featureCounts
Deseq (v1.6.3) was used for differential expression analysis
Genome_build: mm10

organism: Mus musculus

source_name: MEFs infected with GHMT (Gata4, Hand2, Mef2c anf Tbx5)

growth_protocol: MEFs were cultured in DMEM containing 10% FBS and 1% penicillin/streptomycin

extract_protocol:
Total RNA was extracted using Trizol (Invitrogen), following provider’s recommendations.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: 2.5 mM DAPT or DMSO

tag: strain

tag: developmental stage

value: MEFs (Mouse Embryonic fibroblasts)

tag: treatment

value: DAPT


title: MEFs DAPT 2


title: Brgflfl Tax rep1

city: Stanford

first: Erik

last: Miller

state: CA

address: 279 Campus Drive

institute: Stanford University

description: MNase-seq

library_source: genomic

data_processing:
Raw reads were mapped to the mm9/NCBI37 Mus musculus genome using Bowtie (version 0.12.9).
Nucleosome positions were determined using NPS (version 1.3.2).
Dyad centers of fragments ranging from 130 – 180 bp were used to determine average nucleosome densities around ChIP-seq peak summits. Peaks were filtered for summits that occupy linkers as defined by summits that are > 75 bp away from NPS-called nucleosome dyads.
For phasogram analysis, the distances between any given read and any other nearby read on the same strand were tabulated. Only high-confidence nucleosome positions (at least three reads at the same position) were considered.
Genome_build: mm9
Supplementary_files_format_and_content: gzipped bed

molecule: genomic DNA

source_name: Brg1fl/fl ES cells

growth_protocol: We passaged 2-3 x 10^6 ES cells onto gelatin-coated 10 cm plates every two days and changed media every day. The cells were grown in serum-LIF ES cell media.

extract_protocol:
20 million cells were washed in PBS and nuclei were isolated by re-suspending cells in Lysis Buffer (10 mM Tris-HCl pH 7.5, 10 mM NaCl, 3 mM MgCl2, 0.5% NP-40, 0.15 mM spermine, 0.5 M spermidine) and incubating for 5 minutes on ice. Nuclei were washed with MNase Digestion Buffer (10 mM Tris-HCl pH 7.5, 15 mM NaCl, 60 mM KCl, 0.15 mM spermine, 0.5 mM spermidine) and re-suspended with 800 µl of MNase Digestion Buffer with 1 mM CaCl. Nuclei were split into 8 tubes containing 6, 8, 10, 12, 14, 16, 18, or 20 U of MNase (New England BioLabs). Reactions were incubated for precisely 5 minutes at 37 ºC and stopped by adding 150 µl of Stop Buffer (20 mM EDTA pH 8.0, 20 mM EGTA pH 8.0, 0.4% SDS). After Proteinase K (New England BioLabs) digestion, DNA was purified by phenol/chloroform extraction and ethanol precipitation. DNA was run on a 2% agarose/ethidium bromide electrophoresis gel. For sequencing, mononucleosome bands from 12 U digests were isolated using a QIAquick Gel Extraction Kit (QIAGEN).
Libraries were constructed according to Barski, A. et al. High-resolution profiling of histone methylations in the human genome. Cell 129, 823-37 (2007).

treatment_protocol: Brg1 conditional knockout cells were treated with 0.8 µM tamoxifen or the equivalent volume of ethanol for 24 hours and then media was changed to media without tamoxifen or ethanol and cells were grown for another 48 hours.

value: embryonic stem cells

tag: genotype


title: MEFs DAPT 1


title: flg22 18 hrs; ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 231

source_name: flg22 18 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: ACTGT


title: MEFs DMSO 3

value: DMSO


title: flg22 18 hrs; ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 230

source_name: flg22 18 hrs; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: GTACT


title: MEFs DMSO 1


title: MEFs DMSO 2


title: flg22 18 hrs; dde2-2 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 229

source_name: flg22 18 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: 18 hrs

value: GCTCT


title: EC-K4-KO_Day6_3

city: Cleveland

first: Mukesh

middle: K

last: Jain

state: Ohio

address: 2103 Cornell Road

department: Department of Medicine

institute: Case Western Reserve University

description: Cells were sorted by CD31-coated magnetic beads (n=4 per genotype, each n was pooled from 2 mice).

data_processing:
tophat
cuffdiff
Genome_build: GRCm38
Supplementary_files_format_and_content: Excel with cuffdiff output

source_name: Primary cardiac microvascular endothelial cells

extract_protocol:
High Pure RNA Isolation Kit (Roche Life Science)
Illumina Truseq Stranded

tag: background strain

value: heart

tag: cell type

value: endothelial cells

value: KLF4 knockout

tag: age

value: 8-10 weeks


title: flg22 18 hrs; dde2-2 ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 227

source_name: flg22 18 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: leaf

value: CGGT

value: tsl


title: flg22 0 hrs; ein2-1; rep3

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 241

source_name: flg22 0 hrs; ein2-1

value: JePS

value: 0 hrs

value: AGCT


title: EC-K4-KO_Day6_4


title: EC-K4-KO_Day6_2


title: EC-K4-KO_Day6_1


title: flg22 18 hrs; pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 225

source_name: flg22 18 hrs; pad4-1

value: JEpS


title: flg22 18 hrs; ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 224

source_name: flg22 18 hrs; ein2-1

value: TGTGCGAT


title: EC-K2-KO_Day6_4

value: KFL2 knockout


title: EC-K2-KO_Day6_2


title: flg22 18 hrs; sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 226

source_name: flg22 18 hrs; sid2-2

value: JEPs

value: 18 hrs

value: TCGT


title: EC-K2-KO_Day6_1

value: heart

value: endothelial cells


title: EC-K2-KO_Day6_3

value: 8-10 weeks


title: EC-K2K4-DKO_Day6_4

value: KLF2 and KLF4 double knockout


title: flg22 18 hrs; dde2-2 ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 234

source_name: flg22 18 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: CGAGAT


title: Brgflfl EtOH rep1

description: MNase-seq

value: embryonic stem cells


title: EC-K2K4-DKO_Day6_3


title: EC-K2K4-DKO_Day6_2


title: flg22 18 hrs; Col-0; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 222

source_name: flg22 18 hrs; Col-0

value: JEPS

value: leaf

value: TTGCGCT

value: tsl


title: flg22 9 hrs; fls2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 221

source_name: flg22 9 hrs; fls2

value: 9 hrs

value: CATACGT


title: flg22 18 hrs; dde2-2 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 228

source_name: flg22 18 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: GCAT


title: Cre control_Day6_1

value: heart

value: cre control


title: Cre control_Day6_3

value: endothelial cells

value: 8-10 weeks


title: WT-2_Cyto

city: Seoul

first: Yoon-Ho

last: Hong

address: 28 Yeongeon-dong, Jongno-gu

department: Neurology

country: South Korea

institute: Seoul National University College of Medicine

data_processing:
Illumina CASAVA v1.8.2 software was used for basecalling
Sequenced reads were trimmed for adaptor sequences using Cutadapt v1.2.1, and then mapped to Mus musculus genome mm9 using TopHat v2.0.13 with parameters -r 0 -library-type fr-firststrand --mate-std-dev 100 --solexa-quals -p 24 --bowtie-n.
After removing duplicate reads, the number of reads mapped to gene features were counted using HTSeq v0.6.1.
The number of reads counted by HTseq were converted to log2-read counts after adding one to the read counts. The log2-read counts for the samples in each condition were then normalized using the quantile normalization method (MATLAB R2011b).
Genome_build: Mus musculus (mm9)
Supplementary_files_format_and_content: tab-delimited text files including normalized read counts for each sample

molecule: polyA RNA

source_name: Cytoplasmic fraction of NSC-34 cells transfected with the pCI-neo expression vector containing human wild-type SOD1

extract_protocol:
Total RNAs were extracted from nucleus and cytoplasm fractions from NSC34 cells transfected with and expressing human wild-type or mutant SOD1 (G93A) . Poly(A) mRNA isolation from total RNA and fragmentation were performed using the Illumina HiSeq2000 (Illumina, San Diego, Ca, USA), according to the manufacturer’s instructions.
1 µg of the total RNA was analysed using the TruSeq RNA library kit to construct the cDNA libraries

tag: cell line

tag: fraction

value: Cytoplasmic

value: human wild type SOD1


title: WT-2_Nu

source_name: Nuclear fraction of NSC-34 cells transfected with the pCI-neo expression vector containing human wild-type SOD1

value: Nuclear


title: MT-2_Nu

source_name: Nuclear fraction of NSC-34 cells transfected with the pCI-neo expression vector containing human mutant SOD1 (G93A)

value: human mutant SOD1 (G93A)


title: MT-2_Cyto

source_name: Cytoplasmic fraction of NSC-34 cells transfected with the pCI-neo expression vector containing human mutant SOD1 (G93A)


title: flg22 9 hrs; ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 219

source_name: flg22 9 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: GACACT


title: WT-1_Nu


title: flg22 9 hrs; dde2-2 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 218

source_name: flg22 9 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: leaf

value: CGAGAT

value: tsl


title: flg22 9 hrs; dde2-2 ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 217

source_name: flg22 9 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: 9 hrs

value: TTGGAT


title: WT-1_Cyto


title: flg22 9 hrs; pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 215

source_name: flg22 9 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: ACTGT


title: flg22 9 hrs; dde2-2 ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 216

source_name: flg22 9 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: ATCCT


title: MT-1_Cyto

value: Cytoplasmic

value: human mutant SOD1 (G93A)


title: WT-0_Cyto

value: human wild type SOD1


title: flg22 18 hrs; dde2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 223

source_name: flg22 18 hrs; dde2-2

value: jEPS

value: 18 hrs

value: AACAGAGT


title: WT-0_Nu

value: Nuclear


title: MT-1_Nu


title: MT-0_Nu


title: Cre control_Day6_4

source_name: Primary cardiac microvascular endothelial cells

value: heart

value: endothelial cells

value: cre control

value: 8-10 weeks


title: flg22 9 hrs; ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 214

source_name: flg22 9 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: 9 hrs

value: leaf

value: GTACT

value: tsl


title: EC-K2K4-DKO_Day6_1

description: Cells were sorted by CD31-coated magnetic beads (n=4 per genotype, each n was pooled from 2 mice).

value: KLF2 and KLF4 double knockout


title: MT-0_Cyto

value: Cytoplasmic

value: human mutant SOD1 (G93A)


title: Cre control_Day6_2


title: JV6314GFP

city: Tartu

first: Viljar

last: Jaks

state: Tartumaa

address: Riia 23

department: Institute of Molecular and Cell Biology

country: Estonia

institute: University of Tartu

description: Sample 7

data_processing:
HT-seq python package (version, 0.5.3p9, with flags --mode=union --stranded=no --type=exon) was used to count the number of reads aligned to the reference genes (genome build GRCm38.p4, Ensembl).
Differential gene expression analysis was done with R using package EdgeR (v3.2.4) and a gene was considered differentially expressed if the adjusted p-value was <0.05.
Genome_build: mm10 (Mouse)

source_name: liver

extract_protocol:
At the age of 8 weeks, liver cells were isolated by two-step perfusion protocol. GFP and noGFP liver cells were collected by FACS sorting and RNA was isolated using Acturus PicoPure RNA Isolation Kit
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: Mice received doxycycline from birth until postnatal day 5 to induce H2B-EGFP expression.

tag: transgene

value: R26rtTA het/H2B-EGFP het


title: flg22 9 hrs; ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 213

source_name: flg22 9 hrs; ein2-1 pad4-1

tag: genotype/variation

value: ein2-1 pad4-1

value: JepS

value: GCTCT


title: JV624noGFP

description: Sample 6


title: flg22 9 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 220

value: dde2-2 ein2-1 pad4-1 sid2-2

tag: concise genotype name

value: jeps

value: CAGAGT


title: JV621GFP

description: Sample 3


title: JV624GFP

description: Sample 5


title: flg22 9 hrs; dde2-2 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 212

source_name: flg22 9 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

tag: hrs after flg22 infiltration

value: GCAT


title: flg22 9 hrs; dde2-2 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 211

source_name: flg22 9 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: 9 hrs

tag: tissue

value: CGGT


title: JV621noGFP

description: Sample 4


title: flg22 9 hrs; dde2-2 ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 210

source_name: flg22 9 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: leaf

tag: barcode

value: TCGT

value: tsl


title: JV602GFP

description: Sample 1

value: R26rtTA het/H2B-EGFP het


title: JV602noGFP

description: Sample 2


title: RTP1/2 dKO 3

city: Durham

first: Kentaro

last: IKEGAMI

address: 213 Research Drive

institute: Duke University

data_processing:
A kallisto quant command was used in order to align RNA-Seq data to mouse transcripts, and count reads on each transcript.
The parameters which we used were --single -l 557 -s 120 -b 100.
Genome_build: mm10 rmRNAs from USCS
Supplementary_files_format_and_content: An output file from kallisto. Gene names are in the first column and read counts are in the fourth column.

source_name: Olfactory epithelium

extract_protocol:
Olfactory epithelium was dissected out and RNA was extracted using Trizol reagent. Stranded RNA-Seq kit (KAPA) was used for the construction of sequencing libraries followed by Illumina HiSeq.
RNA libraries were prepared for sequencing using standard Illumina protocols

value: olfactory epithelium

value: RTP1 and RTP2  -/-

value: post natal day 21


title: RTP1/2 dKO 1


title: RTP1/2 dKO 2


title: flg22 9 hrs; sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 209

source_name: flg22 9 hrs; sid2-2

value: JEPs

value: AGCT

tag: gaiix lane


title: wild type 2

value: wild type


title: flg22 9 hrs; ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 207

source_name: flg22 9 hrs; ein2-1

value: JePS

value: AACAGAGT

tag: machine location


title: JV6314noGFP

description: Sample 8


title: flg22 9 hrs; pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 208

source_name: flg22 9 hrs; pad4-1

value: JEpS

value: TGTGCGAT


title: fo6g

city: Cambridge

first: Martin

last: Turner

address: Babraham Hall

department: Lymphocyte Signalling and Development

country: United Kingdom

institute: Babraham Institute

data_processing:
Libraies were sequenced using Illumina's Hiseq (100bp paired end sequencing)
Basecalling was performed using the Illumina default pipeline
Sample demultiplexing was performed by Aros Applied Biotechnology A/S
Reads were trimmed to remove adapter sequences using Trim Galore
Reads were mapped using Tophat (version 2.0.12) to the GRCm38 mouse assembly
Read counts for each gene were generated in htseq-count: transcripts from the same gene were collapsed into a single transcript containing all exons
Differences in the abundance of transcripts between GFP and control samples were calculated in the R/Bioconductor program DESeq2 (version 1.10.1).
Genome_build: GRCm38
Supplementary_files_format_and_content: tab-delimited text files include raw and normalised read counts for each sample

source_name: Spleen

extract_protocol:
Total RNA was extracted using RNeasy micro kit (Qiagen) this included an on-column Dnase I treatment
cDNA libaries were prepared at AROS Applied Biotechnology A/S using the TruSeq Stranded mRNA Sample Prep Kit (Illumina)

treatment_protocol: B cells were enriched using the Mouse B cell isolation kit (Miltenyi Biotec). To purify specific B cell subsets, cells were subsequently sorted using a BD FACSAria III or a BD FACSAria Fusion, using cell type specific staining panels: follicular B cells, B220+CD93+CD21+CD23+.

value: ex-vivo follicular B cells

value: Rosa26GFPZFP36L1 CD23cre/+


title: wild type 1

tag: strain


title: fo7g


title: fo4g


title: fo8g


title: fo5g


title: flg22 9 hrs; dde2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 206

source_name: flg22 9 hrs; dde2-2

value: jEPS

value: 9 hrs

value: TTGCGCT


title: fo2g


title: flg22 9 hrs; Col-0; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 205

source_name: flg22 9 hrs; Col-0

value: JEPS

value: leaf

value: CATACGT

value: tsl


title: flg22 5 hrs; fls2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 204

source_name: flg22 5 hrs; fls2

value: 5 hrs

value: CAGAGT


title: fo3g


title: flg22 5 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 203

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: GACACT


title: fo7

data_processing:
Libraies were sequenced using Illumina's Hiseq (100bp paired or single end sequencing)
Basecalling was performed using the Illumina default pipeline
Sample demultiplexing was performed by Aros Applied Biotechnology A/S
Reads were trimmed to remove adapter sequences using Trim Galore
Reads were mapped using Tophat (version 2.0.12) to the GRCm38 mouse assembly
Read counts for each gene were generated in htseq-count: transcripts from the same gene were collapsed into a single transcript containing all exons
Differences in the abundance of transcripts between KO and control samples were calculated in the R/Bioconductor program DESeq2 (version 1.10.1).
Genome_build: GRCm38
Supplementary_files_format_and_content: tab-delimited text files include raw and normalised read counts for each sample

extract_protocol:
Total RNA was extracted using RNeasy micro kit (Qiagen) this included an on-column Dnase I treatment
cDNA libaries were prepared at AROS Applied Biotechnology A/S using the SMARTer Ultra Low Input RNA v4 and SMARTer Low Input Library Prep Kit V2 (Clontech).

treatment_protocol: B cells were enriched using the Mouse B cell isolation kit (Miltenyi Biotec). To purify specific B cell subsets, cells were subsequently sorted using a BD FACSAria III or a BD FACSAria Fusion, using cell type specific staining panels: marginal zone B cells, B220+CD93+CD21hiCD23− and follicular B cells, B220+CD93+CD21+CD23+.

value: Zfp36l1fl/fl cre-


title: fo8


title: fo1g


title: flg22 5 hrs; ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 202

source_name: flg22 5 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: CGAGAT


title: flg22 5 hrs; dde2-2 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 201

source_name: flg22 5 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: TTGGAT


title: mz7

value: ex-vivo marginal zone B cells


title: wild type 3

value: olfactory epithelium

value: wild type

tag: developmental stage

value: post natal day 21


title: fo3

value: ex-vivo follicular B cells


title: fo4


title: mz5


title: mz6


title: flg22 5 hrs; dde2-2 ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 200

source_name: flg22 5 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: 5 hrs

value: leaf

value: ATCCT

value: tsl


title: flg22 5 hrs; dde2-2 ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 199

source_name: flg22 5 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: ACTGT


title: mz4


title: flg22 5 hrs; ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 197

source_name: flg22 5 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: GCTCT


title: flg22 5 hrs; pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 198

source_name: flg22 5 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: GTACT


title: mz2

value: ex-vivo marginal zone B cells


title: mz8


title: mz3


title: flg22 5 hrs; dde2-2 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 195

source_name: flg22 5 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: CGGT


title: flg22 5 hrs; dde2-2 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 194

source_name: flg22 5 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: 5 hrs

value: TCGT


title: flg22 5 hrs; ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 196

source_name: flg22 5 hrs; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: leaf

value: GCAT

value: tsl


title: flg22 3 hrs; fls2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 187

source_name: flg22 3 hrs; fls2

value: 3 hrs

value: GACACT

value: umn


title: flg22 5 hrs; dde2-2 ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 193

source_name: flg22 5 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: AGCT


title: flg22 3 hrs; ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 185

source_name: flg22 3 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: TTGGAT


title: flg22 5 hrs; sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 192

source_name: flg22 5 hrs; sid2-2

value: JEPs

value: TGTGCGAT


title: flg22 5 hrs; pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 191

source_name: flg22 5 hrs; pad4-1

value: JEpS

value: 5 hrs

value: AACAGAGT


title: flg22 3 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 186

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: leaf

value: CGAGAT


title: flg22 5 hrs; Col-0; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 188

source_name: flg22 5 hrs; Col-0

value: JEPS

value: CAGAGT


title: mz1

source_name: Spleen

value: ex-vivo marginal zone B cells


title: flg22 3 hrs; dde2-2 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 184

source_name: flg22 3 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: 3 hrs

value: ATCCT

value: umn


title: flg22 5 hrs; ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 190

source_name: flg22 5 hrs; ein2-1

value: JePS

value: TTGCGCT


title: flg22 3 hrs; ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 180

source_name: flg22 3 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: GCAT


title: flg22 3 hrs; pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 181

source_name: flg22 3 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: GCTCT


title: flg22 3 hrs; ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 179

source_name: flg22 3 hrs; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: leaf

value: CGGT


title: flg22 3 hrs; dde2-2 ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 183

source_name: flg22 3 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: ACTGT


title: flg22 3 hrs; dde2-2 ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 176

source_name: flg22 3 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: 3 hrs

value: TGTGCGAT


title: flg22 3 hrs; dde2-2 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 177

source_name: flg22 3 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: AGCT

value: umn


title: flg22 3 hrs; dde2-2 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 178

source_name: flg22 3 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: TCGT


title: flg22 3 hrs; dde2-2 ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 182

source_name: flg22 3 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: GTACT


title: flg22 5 hrs; dde2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 189

source_name: flg22 5 hrs; dde2-2

value: jEPS

value: 5 hrs

value: leaf

value: CATACGT


title: flg22 3 hrs; Col-0; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 171

source_name: flg22 3 hrs; Col-0

value: JEPS

value: GACACT


title: flg22 3 hrs; pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 174

source_name: flg22 3 hrs; pad4-1

value: JEpS

value: 3 hrs

value: TTGCGCT


title: flg22 3 hrs; dde2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 172

source_name: flg22 3 hrs; dde2-2

value: CAGAGT


title: flg22 2 hrs; fls2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 170

source_name: flg22 2 hrs; fls2

value: 2 hrs

value: CGAGAT

value: umn


title: flg22 2 hrs; ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 168

source_name: flg22 2 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: ATCCT


title: flg22 2 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 169

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: TTGGAT


title: flg22 2 hrs; dde2-2 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 167

source_name: flg22 2 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: leaf

value: ACTGT


title: flg22 2 hrs; dde2-2 ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 166

source_name: flg22 2 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: GTACT


title: flg22 2 hrs; dde2-2 ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 165

source_name: flg22 2 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: GCTCT


title: flg22 2 hrs; dde2-2 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 161

source_name: flg22 2 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: 2 hrs

value: AGCT

value: umn


title: flg22 2 hrs; pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 164

source_name: flg22 2 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: GCAT


title: flg22 2 hrs; sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 158

source_name: flg22 2 hrs; sid2-2

value: JEPs

value: TTGCGCT


title: flg22 2 hrs; dde2-2 ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 159

source_name: flg22 2 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: leaf

value: AACAGAGT


title: flg22 2 hrs; ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 156

source_name: flg22 2 hrs; ein2-1

value: JePS

value: CAGAGT


title: flg22 1 hr; fls2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 153

source_name: flg22 1 hr; fls2

value: 1 hr

value: TTGGAT


title: flg22 1 hr; dde2-2 ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 152

source_name: flg22 1 hr; dde2-2 ein2-1 pad4-1 sid2-2

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: ATCCT


title: flg22 2 hrs; Col-0; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 154

source_name: flg22 2 hrs; Col-0

value: JEPS

value: 2 hrs

value: CGAGAT

value: umn


title: flg22 1 hr; pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 147

source_name: flg22 1 hr; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: CGGT


title: flg22 3 hrs; ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 173

source_name: flg22 3 hrs; ein2-1

value: 3 hrs

value: CATACGT


title: flg22 1 hr; ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 146

source_name: flg22 1 hr; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: leaf

value: TCGT


title: flg22 2 hrs; pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 157

source_name: flg22 2 hrs; pad4-1

value: JEpS


title: flg22 2 hrs; dde2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 155

source_name: flg22 2 hrs; dde2-2

value: jEPS

value: GACACT


title: flg22 1 hr; dde2-2 ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 148

source_name: flg22 1 hr; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: 1 hr

value: GCAT


title: flg22 1 hr; ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 151

source_name: flg22 1 hr; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: ACTGT

value: umn


title: flg22 1 hr; ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 145

source_name: flg22 1 hr; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: AGCT


title: flg22 1 hr; dde2-2 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 143

source_name: flg22 1 hr; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: AACAGAGT


title: flg22 1 hr; dde2-2 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 144

source_name: flg22 1 hr; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: leaf

value: TGTGCGAT


title: flg22 1 hr; dde2-2 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 150

source_name: flg22 1 hr; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: GTACT


title: flg22 1 hr; dde2-2 ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 142

source_name: flg22 1 hr; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: 1 hr

value: TTGCGCT


title: flg22 1 hr; sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 141

source_name: flg22 1 hr; sid2-2

value: JEPs

value: CATACGT

value: umn


title: flg22 1 hr; pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 140

source_name: flg22 1 hr; pad4-1

value: JEpS

value: CAGAGT


title: flg22 2 hrs; dde2-2 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 160

source_name: flg22 2 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: 2 hrs


title: flg22 1 hr; dde2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 138

source_name: flg22 1 hr; dde2-2

value: jEPS

value: leaf

value: CGAGAT


title: flg22 1 hr; ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 139

source_name: flg22 1 hr; ein2-1

value: JePS

value: GACACT


title: flg22 2 hrs; ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 162

source_name: flg22 2 hrs; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: TCGT


title: flg22 2 hrs; ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 163

source_name: flg22 2 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: CGGT


title: flg22 3 hrs; sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 175

source_name: flg22 3 hrs; sid2-2

value: JEPs

value: 3 hrs

value: AACAGAGT

value: umn


title: flg22 0 hrs; fls2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 136

source_name: flg22 0 hrs; fls2

value: 0 hrs

value: ATCCT


title: flg22 0 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 135

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: ACTGT


title: flg22 1 hr; dde2-2 ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 149

source_name: flg22 1 hr; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: 1 hr

value: leaf

value: GCTCT


title: flg22 0 hrs; ein2-1 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 134

source_name: flg22 0 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: GTACT


title: flg22 0 hrs; dde2-2 ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 131

source_name: flg22 0 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: CGGT


title: flg22 0 hrs; ein2-1 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 128

source_name: flg22 0 hrs; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: TGTGCGAT

value: umn


title: flg22 0 hrs; dde2-2 pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 133

source_name: flg22 0 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: 0 hrs


title: flg22 0 hrs; dde2-2 ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 132

source_name: flg22 0 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: GCAT


title: flg22 0 hrs; dde2-2 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 127

source_name: flg22 0 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: leaf

value: AACAGAGT


title: flg22 0 hrs; pad4-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 130

source_name: flg22 0 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: TCGT


title: flg22 0 hrs; ein2-1 sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 129

source_name: flg22 0 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: AGCT


title: flg22 0 hrs; ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 122

source_name: flg22 0 hrs; ein2-1

value: JePS

value: CGAGAT

value: umn


title: flg22 0 hrs; sid2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 124

source_name: flg22 0 hrs; sid2-2

value: JEPs

value: 0 hrs

value: CAGAGT


title: flg22 0 hrs; dde2-2 pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 126

source_name: flg22 0 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: TTGCGCT


title: flg22 0 hrs; dde2-2 ein2-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 125

source_name: flg22 0 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: leaf

value: CATACGT


title: flg22 0 hrs; dde2-2; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 121

source_name: flg22 0 hrs; dde2-2

value: jEPS

value: TTGGAT


title: flg22 0 hrs; Col-0; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 120

source_name: flg22 0 hrs; Col-0

value: JEPS

value: ATCCT


title: flg22 18 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 118

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: 18 hrs

value: GTACT


title: flg22 18 hrs; dde2-2 pad4-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 116

source_name: flg22 18 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: GCAT

value: umn


title: flg22 18 hrs; fls2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 119

source_name: flg22 18 hrs; fls2

value: ACTGT


title: flg22 18 hrs; dde2-2 ein2-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 115

source_name: flg22 18 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: CGGT


title: flg22 18 hrs; pad4-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 113

source_name: flg22 18 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: leaf

value: AGCT


title: flg22 18 hrs; dde2-2 ein2-1 pad4-1; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 114

source_name: flg22 18 hrs; dde2-2 ein2-1 pad4-1

value: dde2-2 ein2-1 pad4-1

value: jepS

value: TCGT


title: flg22 18 hrs; ein2-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 112

source_name: flg22 18 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: 18 hrs

value: TGTGCGAT


title: flg22 18 hrs; ein2-1 pad4-1; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 111

source_name: flg22 18 hrs; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: AACAGAGT


title: flg22 18 hrs; dde2-2 ein2-1; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 108

source_name: flg22 18 hrs; dde2-2 ein2-1

value: dde2-2 ein2-1

value: jePS

value: CAGAGT

value: umn


title: flg22 18 hrs; dde2-2 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 110

source_name: flg22 18 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: TTGCGCT


title: flg22 18 hrs; dde2-2 pad4-1; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 109

source_name: flg22 18 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: leaf

value: CATACGT


title: flg22 18 hrs; sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 107

source_name: flg22 18 hrs; sid2-2

value: JEPs

value: GACACT


title: flg22 18 hrs; pad4-1; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 106

source_name: flg22 18 hrs; pad4-1

value: JEpS

value: 18 hrs

value: CGAGAT


title: flg22 0 hrs; pad4-1; rep2

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 123

source_name: flg22 0 hrs; pad4-1

value: 0 hrs


title: flg22 18 hrs; ein2-1; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 105

source_name: flg22 18 hrs; ein2-1

value: JePS

value: TTGGAT


title: flg22 18 hrs; dde2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 104

source_name: flg22 18 hrs; dde2-2

value: jEPS

value: ATCCT


title: flg22 9 hrs; dde2-2 ein2-1 pad4-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 101

value: dde2-2 ein2-1 pad4-1 sid2-2

value: jeps

value: 9 hrs

value: GCTCT

value: umn


title: flg22 9 hrs; dde2-2 pad4-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 99

source_name: flg22 9 hrs; dde2-2 pad4-1 sid2-2

value: dde2-2 pad4-1 sid2-2

value: jEps

value: leaf

value: CGGT


title: flg22 9 hrs; pad4-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 96

source_name: flg22 9 hrs; pad4-1 sid2-2

value: pad4-1 sid2-2

value: JEps

value: TGTGCGAT


title: flg22 9 hrs; ein2-1 pad4-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 100

source_name: flg22 9 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: GCAT


title: flg22 9 hrs; dde2-2 ein2-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 98

source_name: flg22 9 hrs; dde2-2 ein2-1 sid2-2

value: dde2-2 ein2-1 sid2-2

value: jePs

value: TCGT


title: flg22 9 hrs; ein2-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 95

source_name: flg22 9 hrs; ein2-1 sid2-2

value: ein2-1 sid2-2

value: JePs

value: AACAGAGT


title: flg22 9 hrs; ein2-1 pad4-1; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 94

source_name: flg22 9 hrs; ein2-1 pad4-1

value: ein2-1 pad4-1

value: JepS

value: 9 hrs

value: TTGCGCT

value: umn


title: flg22 9 hrs; dde2-2 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 93

source_name: flg22 9 hrs; dde2-2 sid2-2

value: dde2-2 sid2-2

value: jEPs

value: leaf

value: CATACGT


title: flg22 18 hrs; ein2-1 pad4-1 sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 117

source_name: flg22 18 hrs; ein2-1 pad4-1 sid2-2

value: ein2-1 pad4-1 sid2-2

value: Jeps

value: 18 hrs

value: GCTCT


title: flg22 9 hrs; dde2-2 pad4-1; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 92

source_name: flg22 9 hrs; dde2-2 pad4-1

value: dde2-2 pad4-1

value: jEpS

value: CAGAGT


title: flg22 9 hrs; sid2-2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 90

source_name: flg22 9 hrs; sid2-2

value: JEPs

value: CGAGAT


title: flg22 9 hrs; fls2; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 102

source_name: flg22 9 hrs; fls2

value: GTACT


title: flg22 18 hrs; Col-0; rep1

description:
concise genotype name indicates the presence (uppercase) or absence (lowercase) of the sectors JA, ET, PAD4, and SA. dde2-2, ein2-1, pad4-1, and sid2-2 remove the JA, ET, PAD4, and SA signaling sectors, respectively.
Sample 103

source_name: flg22 18 hrs; Col-0

value: JEPS

value: ACTGT