title: ChIP-seq from A549 (ENCLB544BTT)

description:
https://www.encodeproject.org/experiments/ENCSR274VPI/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR274VPI
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB544BTT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS722NAW at ENCODE; https://www.encodeproject.org/ENCBS722NAW/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB903RMA)

status: Public on Jan 10 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR274VPI/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR274VPI
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB903RMA
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 8 hours

tag: antibody

tag: line

tag: biosample encode accession

tag: dev stage

value: adult

tag: age

value: 58 year

tag: Sex

value: male

tag: lab

value: Tim Reddy, Duke

tag: treatments

tag: link

value: ENCBS461XLE at ENCODE; https://www.encodeproject.org/ENCBS461XLE/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB945JSI)

description:
https://www.encodeproject.org/experiments/ENCSR269IUA/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR269IUA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR005CRY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB945JSI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 12 hours

value: CEBPB

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS636XOH at ENCODE; https://www.encodeproject.org/ENCBS636XOH/


title: ChIP-seq from A549 (ENCLB770OST)

description:
https://www.encodeproject.org/experiments/ENCSR793HZD/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR793HZD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR088SOR
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB770OST
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 2 hours

value: JUN

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS202TJN at ENCODE; https://www.encodeproject.org/ENCBS202TJN/


title: ChIP-seq from A549 (ENCLB382BYB)

description:
https://www.encodeproject.org/experiments/ENCSR274WRI/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR274WRI
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB382BYB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS568YMR at ENCODE; https://www.encodeproject.org/ENCBS568YMR/


title: ChIP-seq from A549 (ENCLB638EDU)

description:
https://www.encodeproject.org/experiments/ENCSR358ELZ/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR358ELZ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB638EDU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 1 hour

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS537JEP at ENCODE; https://www.encodeproject.org/ENCBS537JEP/


title: ChIP-seq from A549 (ENCLB954NHO)

description:
https://www.encodeproject.org/experiments/ENCSR793HZD/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR793HZD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR088SOR
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB954NHO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS116THZ at ENCODE; https://www.encodeproject.org/ENCBS116THZ/


title: ChIP-seq from A549 (ENCLB375HEI)

description:
https://www.encodeproject.org/experiments/ENCSR269IUA/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR269IUA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR005CRY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB375HEI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS504CVA at ENCODE; https://www.encodeproject.org/ENCBS504CVA/


title: ChIP-seq from A549 (ENCLB381ZXB)

description:
https://www.encodeproject.org/experiments/ENCSR783THJ/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR783THJ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR233BJW
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB381ZXB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS638FWD at ENCODE; https://www.encodeproject.org/ENCBS638FWD/


title: ScK2

city: Pushchino

first: Ivan

middle: V

last: Kulakovskiy

address: Institutskaya 4

country: Russia

institute: Institute of Protein Research

library_source: transcriptomic

data_processing:
The raw reads were trimmed using cutadapt (cutadapt-1.8.1, https://github.com/marcelm/cutadapt) and sickle (version 1.33, https://github.com/najoshi/sickle).
Read mapping to yeast transcriptome was performed with TopHat2 (v 2.0.13; using Bowtie1 for alignment, no novel junctions, unstranded library type).
Read counting was performed with HT-Seq (intersect strict mode, skip multimapped reads).
Differential gene expression was assessed with edgeR (with 'default' TMM normalization).
Genome_build: SGD S288C (  GenBank GCF_000146045.2, UCSC sacCer3)
Supplementary_files_format_and_content: tsv, edgeR output (normalized read counts, logFC and DE P-values)

molecule: total RNA

organism: Saccharomyces cerevisiae

source_name: yeast cell

growth_protocol: The cells were cultivated in YPD (2% glucose, 2% peptone, 1% yeast extract) at 290C and 145 rpm/min to the stationary growth stage. The cells were cultivated for 18 (120) hours in the control (manganese-containing) media. MnSO4 was added to a final concentration of 2.5 mM. In the control YPD medium, Mn2+ concentration was estimated to be 0.0036 mM. The cells were harvested at 5000 g for 20 min.

extract_protocol:
The biomass samples were water-washed in triple, placed in RNALater, frozen and used for RNA isolation. Total RNA was extracted using RNEasy Mini kit (Qiagen), with addition of Plant RNA Isolation aid reagent (Ambion) to lysis buffer RLT.
Libraries were prepared using TruSeq RNA sample preparation kit (Illumina).

tag: genotype

value: CRY, MATa, delta(ade2 his3 leu2 trp1 ura3)

tag: adaptation status

value: control


title: ScM1

value: manganese-adapted


title: ScK1


title: ChIP-seq from A549 (ENCLB792NXW)

description:
https://www.encodeproject.org/experiments/ENCSR269IUA/
***************
biological replicate number: 3
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR269IUA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR005CRY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB792NXW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: Tim Reddy, Duke

value: ENCBS179DJA at ENCODE; https://www.encodeproject.org/ENCBS179DJA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB261AYG)

description:
https://www.encodeproject.org/experiments/ENCSR783THJ/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR783THJ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR233BJW
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB261AYG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: immortalized cell line

value: ENCBS758URS at ENCODE; https://www.encodeproject.org/ENCBS758URS/


title: ChIP-seq from A549 (ENCLB579NES)

description:
https://www.encodeproject.org/experiments/ENCSR851SOK/
***************
biological replicate number: 3
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR851SOK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR266YIS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB579NES
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 3 hours

value: CTCF

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS971BDW at ENCODE; https://www.encodeproject.org/ENCBS971BDW/


title: 9 months age

city: Fribourg

first: Sara

middle: S

last: Fonseca Costa

address: Chemin du Musée 5

country: Switzerland

institute: University of Fribourg

description: 9 months age

data_processing:
Raw sequencing data were trimmed to 35 bp.
Mapping was performed using CLC Genomics Workbench (V5) with a similarity parameter of 0.95and a length fraction parameter of 0.95.
Mappings were verified using the IGV genomics viewer.
Genome_build: mm9
Supplementary_files_format_and_content: tab-delimited txt files were generated using HTSeq-count. Scores represent abundance measurements.

organism: Mus musculus

source_name: Adult

extract_protocol:
TRIZOL extraction, LiCl precipitation, DNAseI digestion,EtOH precipitation.
SOLID sequencing kit to enrich for 5' sequences of mRNA, including digestion with 5'-terminase to remove uncapped RNA.
The four libraries with different bar codes were sequenced on one lane using the SOLID 5500xl sequencing platform.

tag: strain

tag: tissue

value: Liver

value: 9 months


title: 15 months age

description: 15 months age

source_name: Old

value: 15 months


title: 3 months age

description: 3 months age

source_name: Young

value: 3 months


title: 21 months age

description: 21 months age

source_name: Very old

value: 21 months


title: ChIP-seq from A549 (ENCLB591AUL)

description:
https://www.encodeproject.org/experiments/ENCSR260WCE/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR260WCE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB591AUL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 30 minutes

value: 58 year

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS531GNJ at ENCODE; https://www.encodeproject.org/ENCBS531GNJ/


title: ChIP-seq from A549 (ENCLB492WNX)

description:
https://www.encodeproject.org/experiments/ENCSR814UWE/
***************
biological replicate number: 2
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR814UWE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR565ZHQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB492WNX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 5 hours

value: JUNB

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS736RNG at ENCODE; https://www.encodeproject.org/ENCBS736RNG/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB429DJB)

description:
https://www.encodeproject.org/experiments/ENCSR761RDU/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR761RDU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR216DMN
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB429DJB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: immortalized cell line

value: adult

value: ENCBS918QQA at ENCODE; https://www.encodeproject.org/ENCBS918QQA/


title: ChIP-seq from A549 (ENCLB019IVZ)

description:
https://www.encodeproject.org/experiments/ENCSR260WCE/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR260WCE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB019IVZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS177BTE at ENCODE; https://www.encodeproject.org/ENCBS177BTE/


title: ChIP-seq from A549 (ENCLB923NAK)

description:
https://www.encodeproject.org/experiments/ENCSR260WCE/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR260WCE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB923NAK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS279PFT at ENCODE; https://www.encodeproject.org/ENCBS279PFT/


title: ChIP-seq from A549 (ENCLB863NOO)

description:
https://www.encodeproject.org/experiments/ENCSR783THJ/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR783THJ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR233BJW
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB863NOO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS928ZCB at ENCODE; https://www.encodeproject.org/ENCBS928ZCB/


title: ChIP-seq from A549 (ENCLB565GJB)

description:
https://www.encodeproject.org/experiments/ENCSR761RDU/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR761RDU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR216DMN
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB565GJB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS434XNK at ENCODE; https://www.encodeproject.org/ENCBS434XNK/


title: ScM2

value: CRY, MATa, delta(ade2 his3 leu2 trp1 ura3)

value: manganese-adapted


title: ChIP-seq from A549 (ENCLB319XQL)

description:
https://www.encodeproject.org/experiments/ENCSR748SVE/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR748SVE
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB319XQL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 4 hours

value: Control

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS776AGG at ENCODE; https://www.encodeproject.org/ENCBS776AGG/


title: ChIP-seq from A549 (ENCLB365GKF)

description:
https://www.encodeproject.org/experiments/ENCSR748SVE/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR748SVE
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB365GKF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS441YHT at ENCODE; https://www.encodeproject.org/ENCBS441YHT/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB931BXL)

description:
https://www.encodeproject.org/experiments/ENCSR255CTA/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR255CTA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR310TYO
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB931BXL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 10 hours

value: immortalized cell line

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS606UTY at ENCODE; https://www.encodeproject.org/ENCBS606UTY/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB513DOP)

description:
https://www.encodeproject.org/experiments/ENCSR255CTA/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR255CTA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR310TYO
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB513DOP
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS630KEQ at ENCODE; https://www.encodeproject.org/ENCBS630KEQ/


title: polyA mRNA RNA-seq from A549 (ENCLB923VNU)

description:
https://www.encodeproject.org/experiments/ENCSR255VBV/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR255VBV
assay title: polyA mRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR632DQP
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB923VNU
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 6 hours

extract_protocol:
general protocol: https://www.encodeproject.org/documents/5533fb32-41f1-4c7a-b62d-0095a33cab20/@@download/attachment/01_RNA_HARVEST_and_ISOLATION_Reddy_GGR.pdf
extraction protocol: https://www.encodeproject.org/documents/53726435-7acc-4248-a5df-3eef6ea3b422/@@download/attachment/02_Rev%20D%20Quick%20Reference%20Card%2C%20PrepX%20PolyA%2048%20Protocol.pdf
extraction protocol: https://www.encodeproject.org/documents/5f9d4f74-4e39-4818-9ee9-d8e9b8004ceb/@@download/attachment/03_RevC%20Quick%20Reference%20Card%2C%20PrepX%20mRNA%2048%20Protocol.pdf
extraction protocol: https://www.encodeproject.org/documents/c72e898e-82c7-478d-b043-8945133a7724/@@download/attachment/04_Rev%20C%20Quick%20Reference%20Card%2C%20PrepX%20PCR%20Cleanup%2048%20Protocol.pdf
general protocol: https://www.encodeproject.org/documents/7a683e77-85ac-45f9-b1fa-b6ceb50ca1bc/@@download/attachment/05_POST_RNA_LIB_PREP_Reddy_GGR.pdf
extraction method: RNeasy Plus Mini Kit Qiagen cat#74134 plus additional on column Dnase treatment

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: 58 year

value: ENCBS182KPQ at ENCODE; https://www.encodeproject.org/ENCBS182KPQ/


title: ChIP-seq from A549 (ENCLB572YJE)

description:
https://www.encodeproject.org/experiments/ENCSR748SVE/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR748SVE
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB572YJE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS898BLW at ENCODE; https://www.encodeproject.org/ENCBS898BLW/


title: ChIP-seq from A549 (ENCLB865UCI)

description:
https://www.encodeproject.org/experiments/ENCSR708DGM/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR708DGM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR748SVE
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB865UCI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: ENCBS587DMY at ENCODE; https://www.encodeproject.org/ENCBS587DMY/


title: ChIP-seq from A549 (ENCLB185NUD)

description:
https://www.encodeproject.org/experiments/ENCSR708DGM/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR708DGM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR748SVE
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB185NUD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS309HYH at ENCODE; https://www.encodeproject.org/ENCBS309HYH/


title: ChIP-seq from A549 (ENCLB280NDL)

description:
https://www.encodeproject.org/experiments/ENCSR242EWU/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR242EWU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB280NDL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS790ILW at ENCODE; https://www.encodeproject.org/ENCBS790ILW/


title: ChIP-seq from A549 (ENCLB115RIG)

description:
https://www.encodeproject.org/experiments/ENCSR242TBH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR242TBH
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR548SPY
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB115RIG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS889QXH at ENCODE; https://www.encodeproject.org/ENCBS889QXH/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB907FIF)

description:
https://www.encodeproject.org/experiments/ENCSR708DGM/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR708DGM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR748SVE
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB907FIF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS362JCG at ENCODE; https://www.encodeproject.org/ENCBS362JCG/


title: ChIP-seq from A549 (ENCLB500UHV)

description:
https://www.encodeproject.org/experiments/ENCSR666BEY/
***************
biological replicate number: 2
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR666BEY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR701MJQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB500UHV
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 7 hours

value: JUNB

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS363TVX at ENCODE; https://www.encodeproject.org/ENCBS363TVX/


title: ChIP-seq from A549 (ENCLB142PGU)

description:
https://www.encodeproject.org/experiments/ENCSR252FZA/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR252FZA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR344ERJ
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB142PGU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS477BQZ at ENCODE; https://www.encodeproject.org/ENCBS477BQZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB166WOA)

description:
https://www.encodeproject.org/experiments/ENCSR701MJQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR701MJQ
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB166WOA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: male

value: ENCBS393EBF at ENCODE; https://www.encodeproject.org/ENCBS393EBF/


title: ChIP-seq from A549 (ENCLB742XDW)

description:
https://www.encodeproject.org/experiments/ENCSR225AOO/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR225AOO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB742XDW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: Tim Reddy, Duke

value: ENCBS198WYR at ENCODE; https://www.encodeproject.org/ENCBS198WYR/


title: ChIP-seq from A549 (ENCLB042TTQ)

description:
https://www.encodeproject.org/experiments/ENCSR701MJQ/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR701MJQ
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB042TTQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: adult

value: ENCBS143KAK at ENCODE; https://www.encodeproject.org/ENCBS143KAK/


title: ChIP-seq from A549 (ENCLB600KKS)

description:
https://www.encodeproject.org/experiments/ENCSR242EWU/
***************
biological replicate number: 3
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR242EWU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB600KKS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS819DMA at ENCODE; https://www.encodeproject.org/ENCBS819DMA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB204LFB)

description:
https://www.encodeproject.org/experiments/ENCSR242EWU/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR242EWU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB204LFB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS681IDY at ENCODE; https://www.encodeproject.org/ENCBS681IDY/


title: ChIP-seq from A549 (ENCLB765MRN)

description:
https://www.encodeproject.org/experiments/ENCSR225AOO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR225AOO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB765MRN
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS385PXA at ENCODE; https://www.encodeproject.org/ENCBS385PXA/


title: ChIP-seq from A549 (ENCLB961XBF)

description:
https://www.encodeproject.org/experiments/ENCSR664ZHF/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR664ZHF
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR382EJS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB961XBF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS896DFQ at ENCODE; https://www.encodeproject.org/ENCBS896DFQ/


title: ChIP-seq from A549 (ENCLB964AKF)

description:
https://www.encodeproject.org/experiments/ENCSR666BEY/
***************
biological replicate number: 3
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR666BEY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR701MJQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB964AKF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS597WFL at ENCODE; https://www.encodeproject.org/ENCBS597WFL/


title: ChIP-seq from A549 (ENCLB242XBI)

description:
https://www.encodeproject.org/experiments/ENCSR664ZHF/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR664ZHF
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR382EJS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB242XBI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS868SZM at ENCODE; https://www.encodeproject.org/ENCBS868SZM/


title: ChIP-seq from A549 (ENCLB922XKZ)

description:
https://www.encodeproject.org/experiments/ENCSR666BEY/
***************
biological replicate number: 1
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR666BEY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR701MJQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB922XKZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: adult

value: ENCBS945ASE at ENCODE; https://www.encodeproject.org/ENCBS945ASE/


title: ChIP-seq from A549 (ENCLB937ZYA)

description:
https://www.encodeproject.org/experiments/ENCSR664ZHF/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR664ZHF
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR382EJS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB937ZYA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS238VUA at ENCODE; https://www.encodeproject.org/ENCBS238VUA/


title: polyA mRNA RNA-seq from A549 (ENCLB809HNX)

description:
https://www.encodeproject.org/experiments/ENCSR224PTG/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR224PTG
assay title: polyA mRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR632DQP
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB809HNX
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS462FXS at ENCODE; https://www.encodeproject.org/ENCBS462FXS/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB270QCB)

description:
https://www.encodeproject.org/experiments/ENCSR216GEB/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR216GEB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR711MVL
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB270QCB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS624XBK at ENCODE; https://www.encodeproject.org/ENCBS624XBK/


title: ChIP-seq from A549 (ENCLB999YHX)

description:
https://www.encodeproject.org/experiments/ENCSR252FZA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR252FZA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR344ERJ
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB999YHX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: male

value: ENCBS287FJW at ENCODE; https://www.encodeproject.org/ENCBS287FJW/


title: ChIP-seq from A549 (ENCLB871QNF)

description:
https://www.encodeproject.org/experiments/ENCSR216GEB/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR216GEB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR711MVL
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB871QNF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS600VQI at ENCODE; https://www.encodeproject.org/ENCBS600VQI/


title: ChIP-seq from A549 (ENCLB362QBH)

description:
https://www.encodeproject.org/experiments/ENCSR656VWZ/
***************
biological replicate number: 2
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR656VWZ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR233BJW
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB362QBH
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS731CWS at ENCODE; https://www.encodeproject.org/ENCBS731CWS/


title: ChIP-seq from A549 (ENCLB766XAX)

description:
https://www.encodeproject.org/experiments/ENCSR656VWZ/
***************
biological replicate number: 1
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR656VWZ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR233BJW
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB766XAX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS407BKP at ENCODE; https://www.encodeproject.org/ENCBS407BKP/


title: ChIP-seq from A549 (ENCLB209XQS)

description:
https://www.encodeproject.org/experiments/ENCSR215UXN/
***************
biological replicate number: 3
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR215UXN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB209XQS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS509FZP at ENCODE; https://www.encodeproject.org/ENCBS509FZP/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB827HYY)

description:
https://www.encodeproject.org/experiments/ENCSR215DID/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR215DID
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR491TAD
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB827HYY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS608WXT at ENCODE; https://www.encodeproject.org/ENCBS608WXT/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB177FGG)

description:
https://www.encodeproject.org/experiments/ENCSR701MJQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR701MJQ
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB177FGG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS848YCU at ENCODE; https://www.encodeproject.org/ENCBS848YCU/


title: ChIP-seq from A549 (ENCLB165EAC)

description:
https://www.encodeproject.org/experiments/ENCSR215UXN/
***************
biological replicate number: 1
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR215UXN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB165EAC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS807JBI at ENCODE; https://www.encodeproject.org/ENCBS807JBI/


title: ChIP-seq from A549 (ENCLB162YFZ)

description:
https://www.encodeproject.org/experiments/ENCSR656VWZ/
***************
biological replicate number: 3
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR656VWZ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR233BJW
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB162YFZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS022OPA at ENCODE; https://www.encodeproject.org/ENCBS022OPA/


title: ChIP-seq from A549 (ENCLB145JZS)

description:
https://www.encodeproject.org/experiments/ENCSR215DID/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR215DID
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR491TAD
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB145JZS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS218RFX at ENCODE; https://www.encodeproject.org/ENCBS218RFX/


title: ChIP-seq from A549 (ENCLB389NSI)

description:
https://www.encodeproject.org/experiments/ENCSR612GKD/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR612GKD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR366VPA
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB389NSI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS676DUD at ENCODE; https://www.encodeproject.org/ENCBS676DUD/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB734COO)

description:
https://www.encodeproject.org/experiments/ENCSR215UXN/
***************
biological replicate number: 2
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR215UXN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB734COO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS629ILN at ENCODE; https://www.encodeproject.org/ENCBS629ILN/


title: ChIP-seq from A549 (ENCLB200YWK)

description:
https://www.encodeproject.org/experiments/ENCSR612GKD/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR612GKD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR366VPA
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB200YWK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS718OED at ENCODE; https://www.encodeproject.org/ENCBS718OED/


title: ChIP-seq from A549 (ENCLB481FPC)

description:
https://www.encodeproject.org/experiments/ENCSR190VMK/
***************
biological replicate number: 3
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR190VMK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB481FPC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: Tim Reddy, Duke

value: ENCBS087YWG at ENCODE; https://www.encodeproject.org/ENCBS087YWG/


title: ChIP-seq from A549 (ENCLB597CPK)

description:
https://www.encodeproject.org/experiments/ENCSR565ZHQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR565ZHQ
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB597CPK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS611BGI at ENCODE; https://www.encodeproject.org/ENCBS611BGI/


title: ChIP-seq from A549 (ENCLB413GNT)

description:
https://www.encodeproject.org/experiments/ENCSR203XPU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR203XPU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR838ZAU
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB413GNT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line

value: adult

value: ENCBS487FRL at ENCODE; https://www.encodeproject.org/ENCBS487FRL/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB057LBS)

description:
https://www.encodeproject.org/experiments/ENCSR565ZHQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR565ZHQ
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB057LBS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS625OVV at ENCODE; https://www.encodeproject.org/ENCBS625OVV/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB965JFE)

description:
https://www.encodeproject.org/experiments/ENCSR560DEL/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR560DEL
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB965JFE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS101WRY at ENCODE; https://www.encodeproject.org/ENCBS101WRY/


title: ChIP-seq from A549 (ENCLB115POA)

description:
https://www.encodeproject.org/experiments/ENCSR190VMK/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR190VMK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB115POA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS654LYN at ENCODE; https://www.encodeproject.org/ENCBS654LYN/


title: ChIP-seq from A549 (ENCLB667WWZ)

description:
https://www.encodeproject.org/experiments/ENCSR612GKD/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR612GKD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR366VPA
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB667WWZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS792ASV at ENCODE; https://www.encodeproject.org/ENCBS792ASV/


title: ChIP-seq from A549 (ENCLB161XGC)

description:
https://www.encodeproject.org/experiments/ENCSR560DEL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR560DEL
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB161XGC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: Tim Reddy, Duke

value: ENCBS785DSY at ENCODE; https://www.encodeproject.org/ENCBS785DSY/


title: ChIP-seq from A549 (ENCLB882REW)

description:
https://www.encodeproject.org/experiments/ENCSR190VMK/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR190VMK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB882REW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS102GDA at ENCODE; https://www.encodeproject.org/ENCBS102GDA/


title: ChIP-seq from A549 (ENCLB378WUL)

description:
https://www.encodeproject.org/experiments/ENCSR553UWG/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR553UWG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR216DMN
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB378WUL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CTCF

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS094BQG at ENCODE; https://www.encodeproject.org/ENCBS094BQG/


title: ChIP-seq from A549 (ENCLB765SUS)

description:
https://www.encodeproject.org/experiments/ENCSR553UWG/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR553UWG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR216DMN
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB765SUS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS013GXJ at ENCODE; https://www.encodeproject.org/ENCBS013GXJ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB246PFF)

description:
https://www.encodeproject.org/experiments/ENCSR560DEL/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR560DEL
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB246PFF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS901OWZ at ENCODE; https://www.encodeproject.org/ENCBS901OWZ/


title: ChIP-seq from A549 (ENCLB400JBT)

description:
https://www.encodeproject.org/experiments/ENCSR182OZC/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR182OZC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB400JBT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS272AFG at ENCODE; https://www.encodeproject.org/ENCBS272AFG/


title: ChIP-seq from A549 (ENCLB136RHC)

description:
https://www.encodeproject.org/experiments/ENCSR186IQL/
***************
biological replicate number: 1
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR186IQL
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB136RHC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS726LXJ at ENCODE; https://www.encodeproject.org/ENCBS726LXJ/


title: ChIP-seq from A549 (ENCLB592VJU)

description:
https://www.encodeproject.org/experiments/ENCSR186IQL/
***************
biological replicate number: 2
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR186IQL
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB592VJU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS911UKO at ENCODE; https://www.encodeproject.org/ENCBS911UKO/


title: ChIP-seq from A549 (ENCLB004QFM)

description:
https://www.encodeproject.org/experiments/ENCSR553UWG/
***************
biological replicate number: 3
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR553UWG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR216DMN
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB004QFM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CTCF

value: ENCBS957SRX at ENCODE; https://www.encodeproject.org/ENCBS957SRX/


title: ChIP-seq from A549 (ENCLB723BSV)

description:
https://www.encodeproject.org/experiments/ENCSR182OZC/
***************
biological replicate number: 3
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR182OZC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB723BSV
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: adult

value: ENCBS739PTK at ENCODE; https://www.encodeproject.org/ENCBS739PTK/


title: ChIP-seq from A549 (ENCLB058YDR)

description:
https://www.encodeproject.org/experiments/ENCSR186IQL/
***************
biological replicate number: 3
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR186IQL
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB058YDR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS094XGP at ENCODE; https://www.encodeproject.org/ENCBS094XGP/


title: ChIP-seq from A549 (ENCLB112OEC)

description:
https://www.encodeproject.org/experiments/ENCSR171ZJG/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR171ZJG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR325PXS
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB112OEC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS452TOO at ENCODE; https://www.encodeproject.org/ENCBS452TOO/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB490WDL)

description:
https://www.encodeproject.org/experiments/ENCSR147APP/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR147APP
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB490WDL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: Tim Reddy, Duke

value: ENCBS174YVF at ENCODE; https://www.encodeproject.org/ENCBS174YVF/


title: ChIP-seq from A549 (ENCLB884HRT)

description:
https://www.encodeproject.org/experiments/ENCSR171ZJG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR171ZJG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR325PXS
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB884HRT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS133KFY at ENCODE; https://www.encodeproject.org/ENCBS133KFY/


title: ChIP-seq from A549 (ENCLB183VCV)

description:
https://www.encodeproject.org/experiments/ENCSR523BPZ/
***************
biological replicate number: 3
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR523BPZ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR216DMN
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB183VCV
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS287TJZ at ENCODE; https://www.encodeproject.org/ENCBS287TJZ/


title: ChIP-seq from A549 (ENCLB289NVZ)

description:
https://www.encodeproject.org/experiments/ENCSR523BPZ/
***************
biological replicate number: 2
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR523BPZ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR216DMN
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB289NVZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS043VXT at ENCODE; https://www.encodeproject.org/ENCBS043VXT/


title: polyA mRNA RNA-seq from A549 (ENCLB858XEX)

description:
https://www.encodeproject.org/experiments/ENCSR154TDP/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR154TDP
assay title: polyA mRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR632DQP
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB858XEX
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: 58 year

value: ENCBS148XSC at ENCODE; https://www.encodeproject.org/ENCBS148XSC/


title: ChIP-seq from A549 (ENCLB308CHB)

description:
https://www.encodeproject.org/experiments/ENCSR203XPU/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR203XPU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR838ZAU
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB308CHB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS682PYF at ENCODE; https://www.encodeproject.org/ENCBS682PYF/


title: ChIP-seq from A549 (ENCLB833EGI)

description:
https://www.encodeproject.org/experiments/ENCSR565ZHQ/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR565ZHQ
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB833EGI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS578DPH at ENCODE; https://www.encodeproject.org/ENCBS578DPH/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB287CBS)

description:
https://www.encodeproject.org/experiments/ENCSR504LBE/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR504LBE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR565ZHQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB287CBS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: Tim Reddy, Duke

value: ENCBS168IFT at ENCODE; https://www.encodeproject.org/ENCBS168IFT/


title: ChIP-seq from A549 (ENCLB693LYQ)

description:
https://www.encodeproject.org/experiments/ENCSR490YTY/
***************
biological replicate number: 3
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR490YTY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR560DEL
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB693LYQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS766TTZ at ENCODE; https://www.encodeproject.org/ENCBS766TTZ/


title: ChIP-seq from A549 (ENCLB988JSG)

description:
https://www.encodeproject.org/experiments/ENCSR504LBE/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR504LBE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR565ZHQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB988JSG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS951GWL at ENCODE; https://www.encodeproject.org/ENCBS951GWL/


title: ChIP-seq from A549 (ENCLB138RVG)

description:
https://www.encodeproject.org/experiments/ENCSR490YTY/
***************
biological replicate number: 2
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR490YTY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR560DEL
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB138RVG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: adult

value: ENCBS976HVM at ENCODE; https://www.encodeproject.org/ENCBS976HVM/


title: ChIP-seq from A549 (ENCLB662UUY)

description:
https://www.encodeproject.org/experiments/ENCSR147APP/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR147APP
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB662UUY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS924SSS at ENCODE; https://www.encodeproject.org/ENCBS924SSS/


title: ChIP-seq from A549 (ENCLB986PSV)

description:
https://www.encodeproject.org/experiments/ENCSR139DGM/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR139DGM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR310TYO
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB986PSV
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS447LYH at ENCODE; https://www.encodeproject.org/ENCBS447LYH/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB614YYW)

description:
https://www.encodeproject.org/experiments/ENCSR145YCX/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR145YCX
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR690JTW
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB614YYW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS440AKK at ENCODE; https://www.encodeproject.org/ENCBS440AKK/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: DNase-seq from A549 (ENCLB437SPK)

description:
https://www.encodeproject.org/experiments/ENCSR136DNA/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR136DNA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB437SPK

value: immortalized cell line

value: ENCBS478IHD at ENCODE; https://www.encodeproject.org/ENCBS478IHD/


title: DNase-seq from A549 (ENCLB614NVZ)

description:
https://www.encodeproject.org/experiments/ENCSR136DNA/
***************
biological replicate number: 4
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR136DNA
assay title: DNase-seq
assembly: GRCh38
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB614NVZ

value: ENCBS720VDH at ENCODE; https://www.encodeproject.org/ENCBS720VDH/


title: ChIP-seq from A549 (ENCLB784ODX)

description:
https://www.encodeproject.org/experiments/ENCSR489DIG/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR489DIG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR266YIS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB784ODX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS670OTD at ENCODE; https://www.encodeproject.org/ENCBS670OTD/


title: ChIP-seq from A549 (ENCLB185DPX)

description:
https://www.encodeproject.org/experiments/ENCSR489DIG/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR489DIG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR266YIS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB185DPX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS262OWH at ENCODE; https://www.encodeproject.org/ENCBS262OWH/


title: DNase-seq from A549 (ENCLB075GDM)

description:
https://www.encodeproject.org/experiments/ENCSR128IVG/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR128IVG
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB075GDM

value: male

value: ENCBS892LLD at ENCODE; https://www.encodeproject.org/ENCBS892LLD/


title: ChIP-seq from A549 (ENCLB718QTY)

description:
https://www.encodeproject.org/experiments/ENCSR504LBE/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR504LBE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR565ZHQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB718QTY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS471WAI at ENCODE; https://www.encodeproject.org/ENCBS471WAI/


title: ChIP-seq from A549 (ENCLB411XFP)

description:
https://www.encodeproject.org/experiments/ENCSR432AXE/
***************
biological replicate number: 3
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR432AXE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR233BJW
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB411XFP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 8 hours

value: CTCF

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS505GEX at ENCODE; https://www.encodeproject.org/ENCBS505GEX/


title: ChIP-seq from A549 (ENCLB917QHD)

description:
https://www.encodeproject.org/experiments/ENCSR432AXE/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR432AXE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR233BJW
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB917QHD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS366SBH at ENCODE; https://www.encodeproject.org/ENCBS366SBH/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB199IMD)

description:
https://www.encodeproject.org/experiments/ENCSR432AXE/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR432AXE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR233BJW
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB199IMD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS024QOG at ENCODE; https://www.encodeproject.org/ENCBS024QOG/


title: ChIP-seq from A549 (ENCLB376HES)

description:
https://www.encodeproject.org/experiments/ENCSR431LRW/
***************
biological replicate number: 3
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR431LRW
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR139PCE
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB376HES
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: adult

value: ENCBS432NMW at ENCODE; https://www.encodeproject.org/ENCBS432NMW/


title: ChIP-seq from A549 (ENCLB688CDD)

description:
https://www.encodeproject.org/experiments/ENCSR426BPV/
***************
biological replicate number: 1
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR426BPV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR366VPA
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB688CDD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS919DDI at ENCODE; https://www.encodeproject.org/ENCBS919DDI/


title: ChIP-seq from A549 (ENCLB080PAA)

description:
https://www.encodeproject.org/experiments/ENCSR124YCC/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR124YCC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR344ERJ
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB080PAA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS488ZDO at ENCODE; https://www.encodeproject.org/ENCBS488ZDO/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB863RVB)

description:
https://www.encodeproject.org/experiments/ENCSR124VXG/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR124VXG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR005CRY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB863RVB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 12 hours

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS561RRL at ENCODE; https://www.encodeproject.org/ENCBS561RRL/


title: ChIP-seq from A549 (ENCLB264ANF)

description:
https://www.encodeproject.org/experiments/ENCSR147APP/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR147APP
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB264ANF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 2 hours

value: Control

value: immortalized cell line

value: ENCBS401RHC at ENCODE; https://www.encodeproject.org/ENCBS401RHC/


title: ChIP-seq from A549 (ENCLB898PLS)

description:
https://www.encodeproject.org/experiments/ENCSR124VXG/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR124VXG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR005CRY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB898PLS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS417GDL at ENCODE; https://www.encodeproject.org/ENCBS417GDL/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB115ADT)

description:
https://www.encodeproject.org/experiments/ENCSR111ZXV/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR111ZXV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR730UDX
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB115ADT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS771LUP at ENCODE; https://www.encodeproject.org/ENCBS771LUP/


title: ChIP-seq from A549 (ENCLB841RWL)

description:
https://www.encodeproject.org/experiments/ENCSR124VXG/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR124VXG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR005CRY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB841RWL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS162TUK at ENCODE; https://www.encodeproject.org/ENCBS162TUK/


title: ChIP-seq from A549 (ENCLB146DPM)

description:
https://www.encodeproject.org/experiments/ENCSR426BPV/
***************
biological replicate number: 2
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR426BPV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR366VPA
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB146DPM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS784EFT at ENCODE; https://www.encodeproject.org/ENCBS784EFT/


title: ChIP-seq from A549 (ENCLB121NJK)

description:
https://www.encodeproject.org/experiments/ENCSR111ZXV/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR111ZXV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR730UDX
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB121NJK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS041KVF at ENCODE; https://www.encodeproject.org/ENCBS041KVF/


title: ChIP-seq from A549 (ENCLB259JYM)

description:
https://www.encodeproject.org/experiments/ENCSR414CQB/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR414CQB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR382EJS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB259JYM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CTCF

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS321WEQ at ENCODE; https://www.encodeproject.org/ENCBS321WEQ/


title: ChIP-seq from A549 (ENCLB558LYR)

description:
https://www.encodeproject.org/experiments/ENCSR414CQB/
***************
biological replicate number: 3
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR414CQB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR382EJS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB558LYR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS490HND at ENCODE; https://www.encodeproject.org/ENCBS490HND/


title: ChIP-seq from A549 (ENCLB507PHI)

description:
https://www.encodeproject.org/experiments/ENCSR111ZXV/
***************
biological replicate number: 3
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR111ZXV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR730UDX
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB507PHI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS585LTD at ENCODE; https://www.encodeproject.org/ENCBS585LTD/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB106IZB)

description:
https://www.encodeproject.org/experiments/ENCSR124YCC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR124YCC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR344ERJ
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB106IZB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS239RRE at ENCODE; https://www.encodeproject.org/ENCBS239RRE/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB106MTE)

description:
https://www.encodeproject.org/experiments/ENCSR489DIG/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR489DIG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR266YIS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB106MTE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS004XDE at ENCODE; https://www.encodeproject.org/ENCBS004XDE/


title: ChIP-seq from A549 (ENCLB813OYH)

description:
https://www.encodeproject.org/experiments/ENCSR384KPP/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR384KPP
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR088SOR
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB813OYH
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: Tim Reddy, Duke

value: ENCBS114PSH at ENCODE; https://www.encodeproject.org/ENCBS114PSH/


title: ChIP-seq from A549 (ENCLB988QSD)

description:
https://www.encodeproject.org/experiments/ENCSR414CQB/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR414CQB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR382EJS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB988QSD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CTCF

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS628PAB at ENCODE; https://www.encodeproject.org/ENCBS628PAB/


title: ChIP-seq from A549 (ENCLB728OTH)

description:
https://www.encodeproject.org/experiments/ENCSR431LRW/
***************
biological replicate number: 2
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR431LRW
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR139PCE
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB728OTH
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: immortalized cell line

value: ENCBS217ZWD at ENCODE; https://www.encodeproject.org/ENCBS217ZWD/


title: ChIP-seq from A549 (ENCLB105XXA)

description:
https://www.encodeproject.org/experiments/ENCSR384KPP/
***************
biological replicate number: 3
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR384KPP
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR088SOR
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB105XXA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS231UGF at ENCODE; https://www.encodeproject.org/ENCBS231UGF/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB217QDL)

description:
https://www.encodeproject.org/experiments/ENCSR382EJS/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR382EJS
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB217QDL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: ENCBS293HYY at ENCODE; https://www.encodeproject.org/ENCBS293HYY/


title: ChIP-seq from A549 (ENCLB159ZRR)

description:
https://www.encodeproject.org/experiments/ENCSR103UVU/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR103UVU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR711MVL
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB159ZRR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS203TZH at ENCODE; https://www.encodeproject.org/ENCBS203TZH/


title: ChIP-seq from A549 (ENCLB370KJY)

description:
https://www.encodeproject.org/experiments/ENCSR103UVU/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR103UVU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR711MVL
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB370KJY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS036LKM at ENCODE; https://www.encodeproject.org/ENCBS036LKM/


title: ChIP-seq from A549 (ENCLB143CSB)

description:
https://www.encodeproject.org/experiments/ENCSR382EJS/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR382EJS
assay title: ChIP-seq
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB143CSB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: Tim Reddy, Duke

value: ENCBS728DQK at ENCODE; https://www.encodeproject.org/ENCBS728DQK/


title: ChIP-seq from A549 (ENCLB037VHR)

description:
https://www.encodeproject.org/experiments/ENCSR078POK/
***************
biological replicate number: 1
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR078POK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR690JTW
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB037VHR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS366JKZ at ENCODE; https://www.encodeproject.org/ENCBS366JKZ/