title: Lung_25M_46

description:
P1_D2_JV_R_25M_ZT12-31851825
technical_replicate1
sequencing_replicate2


title: Lung_25M_6

status: Public on Dec 12 2017

type: SRA

city: Toronto

first: Art

last: Petronis

state: Ontario

address: 250 College St

department: Campbell Family Mental Health Research Institute

country: Canada

institute: Centre for Addiction and Mental Health

description:
P1_B2_JV_R_25M_ZT56-31859829
technical_replicate1
sequencing_replicate2

library_source: genomic

data_processing:
The libraries were sequenced on the HiSeq 2500 platform (Illumina) using custom sequencing primers.
The FASTQ reads were quality trimmed using Trimmomatic (24695404) for trailing base with phred score < 30 and all reads with post-trimming length < 50 bp.
The trimmed reads were then aligned using Bismark version 0.14 (21493656) and Bowtie 2 version 2.2.2 (22388286).
The aligned reads were further filtered to only include reads that have start and end positions that match the padlock probe annealing arm sequence with no more than 1 mismatch.
The filtered reads were subsequently PCR de-duplicated using unique molecular identifiers.
The filtered read pairs were then converted to methylation calls using the Bismark methylation extractor tool (21493656).
Genome_build: mm10
Supplementary_files_format_and_content: Each txt file contain the following information in order: chrosome #, genomic coordinate, strand, unmethylation count, methylation count, CHH/CHG/CG context of cytosine, exact sequence of the previous context

molecule: genomic DNA

organism: Mus musculus

source_name: Lung

growth_protocol: The mice had ad libitum access to food and water

extract_protocol:
DNA isolation was performed using standard phenol chloroform methods.
Bisulfite padlock probes were designed using the ppDesigner 2.0 software (22306810) for mouse chromosome 7 (mm10).  The probe and library preparation was performed based on previously published protocol (ibid).

tag: tissue

value: Lung

tag: age (in months)

tag: Sex

value: male

tag: strain

tag: treatment (bisulfite/oxybisulfite)

value: bisulfite


title: Lung_25M_4

description:
P1_B11_JV_R_25M_ZT48-31860830
technical_replicate1
sequencing_replicate2


title: Lung_25M_20

description:
P1_B9_JV_R_25M_ZT36-31857831
technical_replicate1
sequencing_replicate2


title: Lung_15M_87

description:
P3_D6_JV_R_15M_ZT34-31570626
technical_replicate3
sequencing_replicate1


title: Lung_15M_88

description:
P3_D7_JV_R_15M_ZT58-31576623
technical_replicate3
sequencing_replicate1


title: Lung_15M_89

description:
P3_D8_JV_R_15M_ZT2-31561694
technical_replicate3
sequencing_replicate1


title: Lung_25M_5

description:
P1_B2_JV_R_25M_ZT56-30878865
technical_replicate1
sequencing_replicate1


title: Lung_25M_1

description:
P1_B10_JV_R_25M_ZT42-30865881
technical_replicate1
sequencing_replicate1


title: Lung_15M_86

description:
P3_D5_JV_R_15M_ZT52-31556694
technical_replicate3
sequencing_replicate1


title: Lung_15M_83

description:
P3_D2_JV_R_15M_ZT32-31572604
technical_replicate3
sequencing_replicate1


title: Lung_15M_84

description:
P3_D3_JV_R_15M_ZT46-31571619
technical_replicate3
sequencing_replicate1


title: Lung_25M_3

description:
P1_B11_JV_R_25M_ZT48-30859866
technical_replicate1
sequencing_replicate1


title: Lung_15M_81

description:
P3_D10_JV_R_15M_ZT6-31557705
technical_replicate3
sequencing_replicate1


title: Lung_15M_80

description:
P3_C9_JV_R_15M_ZT16-31567602
technical_replicate3
sequencing_replicate1


title: Lung_15M_90

description:
P3_D9_JV_R_15M_ZT44-31575636
technical_replicate3
sequencing_replicate1


title: Lung_25M_2

description:
P1_B10_JV_R_25M_ZT42-31848841
technical_replicate1
sequencing_replicate2


title: Lung_15M_82

description:
P3_D11_JV_R_15M_ZT50-31572601
technical_replicate3
sequencing_replicate1


title: Lung_15M_76

description:
P3_C5_JV_R_15M_ZT8-31561690
technical_replicate3
sequencing_replicate1


title: Lung_15M_74

description:
P3_C3_JV_R_15M_ZT38-31561687
technical_replicate3
sequencing_replicate1


title: Lung_15M_73

description:
P3_C2_JV_R_15M_ZT10-31556690
technical_replicate3
sequencing_replicate1


title: Lung_25M_19

description:
P1_B9_JV_R_25M_ZT36-30861880
technical_replicate1
sequencing_replicate1


title: Lung_15M_72

description:
P3_C11_JV_R_15M_ZT4-31577585
technical_replicate3
sequencing_replicate1


title: Lung_15M_85

description:
P3_D4_JV_R_15M_ZT36-31572605
technical_replicate3
sequencing_replicate1


title: Lung_15M_71

description:
P3_C10_JV_R_15M_ZT24-31574605
technical_replicate3
sequencing_replicate1


title: Lung_25M_17

description:
P1_B8_JV_R_25M_ZT22-30875868
technical_replicate1
sequencing_replicate1


title: Lung_15M_70

description:
P3_B9_JV_R_15M_ZT22-31576612
technical_replicate3
sequencing_replicate1


title: Lung_25M_9

description:
P1_B4_JV_R_25M_ZT0-30878866
technical_replicate1
sequencing_replicate1


title: Lung_15M_66

description:
P3_B5_JV_R_15M_ZT14-31570621
technical_replicate3
sequencing_replicate1


title: Lung_15M_67

description:
P3_B6_JV_R_15M_ZT18-31560714
technical_replicate3
sequencing_replicate1


title: Lung_15M_77

description:
P3_C6_JV_R_15M_ZT42-31557703
technical_replicate3
sequencing_replicate1


title: Lung_15M_78

description:
P3_C7_JV_R_15M_ZT12-31557704
technical_replicate3
sequencing_replicate1


title: Lung_15M_65

description:
P3_B4_JV_R_15M_ZT26-31574600
technical_replicate3
sequencing_replicate1


title: Lung_15M_61

description:
P3_B10_JV_R_15M_ZT54-31556682
technical_replicate3
sequencing_replicate1


title: Lung_15M_75

description:
P3_C4_JV_R_15M_ZT20-31572597
technical_replicate3
sequencing_replicate1


title: Lung_15M_68

description:
P3_B7_JV_R_15M_ZT56-31577583
technical_replicate3
sequencing_replicate1


title: Lung_15M_53

description:
P2_D2_JV_R_15M_ZT36-31569594
technical_replicate2
sequencing_replicate1


title: Lung_15M_79

description:
P3_C8_JV_R_15M_ZT48-31568626
technical_replicate3
sequencing_replicate1


title: Lung_15M_49

description:
P2_C8_JV_R_15M_ZT50-31575610
technical_replicate2
sequencing_replicate1


title: Lung_15M_48

description:
P2_C7_JV_R_15M_ZT22-31558696
technical_replicate2
sequencing_replicate1


title: Lung_15M_60

description:
P2_D9_JV_R_15M_ZT30-31571611
technical_replicate2
sequencing_replicate1


title: Lung_15M_46

description:
P2_C5_JV_R_15M_ZT56-31560699
technical_replicate2
sequencing_replicate1


title: Lung_15M_63

description:
P3_B2_JV_R_15M_ZT28-31560710
technical_replicate3
sequencing_replicate1


title: Lung_15M_69

description:
P3_B8_JV_R_15M_ZT40-31569601
technical_replicate3
sequencing_replicate1


title: Lung_15M_59

description:
P2_D8_JV_R_15M_ZT42-31557691
technical_replicate2
sequencing_replicate1


title: Lung_15M_52

description:
P2_D11_JV_R_15M_ZT20-31558698
technical_replicate2
sequencing_replicate1


title: Lung_15M_42

description:
P2_C11_JV_R_15M_ZT54-31569592
technical_replicate2
sequencing_replicate1


title: Lung_15M_58

description:
P2_D7_JV_R_15M_ZT48-31571609
technical_replicate2
sequencing_replicate1


title: Lung_15M_57

description:
P2_D6_JV_R_15M_ZT4-31577576
technical_replicate2
sequencing_replicate1


title: Lung_15M_39

description:
P2_B8_JV_R_15M_ZT44-31558690
technical_replicate2
sequencing_replicate1


title: Lung_15M_50

description:
P2_C9_JV_R_15M_ZT12-31573617
technical_replicate2
sequencing_replicate1


title: Lung_15M_55

description:
P2_D4_JV_R_15M_ZT10-31561674
technical_replicate2
sequencing_replicate1


title: Lung_15M_54

description:
P2_D3_JV_R_15M_ZT16-31558700
technical_replicate2
sequencing_replicate1


title: Lung_15M_32

description:
P2_B11_JV_R_15M_ZT38-31573603
technical_replicate2
sequencing_replicate1


title: Lung_15M_36

description:
P2_B5_JV_R_15M_ZT14-31573608
technical_replicate2
sequencing_replicate1


title: Lung_15M_64

description:
P3_B3_JV_R_15M_ZT30-31568618
technical_replicate3
sequencing_replicate1


title: Lung_15M_56

description:
P2_D5_JV_R_15M_ZT2-31559678
technical_replicate2
sequencing_replicate1


title: Lung_15M_51

description:
P2_D10_JV_R_15M_ZT24-31572587
technical_replicate2
sequencing_replicate1


title: Lung_15M_31

description:
P2_B10_JV_R_15M_ZT8-31571599
technical_replicate2
sequencing_replicate1


title: Lung_15M_45

description:
P2_C4_JV_R_15M_ZT40-31556671
technical_replicate2
sequencing_replicate1


title: Lung_15M_62

description:
P3_B11_JV_R_15M_ZT0-31563667
technical_replicate3
sequencing_replicate1


title: Lung_15M_44

description:
P2_C3_JV_R_15M_ZT0-31569590
technical_replicate2
sequencing_replicate1


title: Lung_15M_30

description:
P1_D9_JV_R_15M_ZT12-31567580
technical_replicate1
sequencing_replicate1


title: Lung_15M_24

description:
P1_D3_JV_R_15M_ZT58-31560688
technical_replicate1
sequencing_replicate1


title: Lung_15M_23

description:
P1_D2_JV_R_15M_ZT0-31563638
technical_replicate1
sequencing_replicate1


title: Lung_15M_43

description:
P2_C2_JV_R_15M_ZT6-31576596
technical_replicate2
sequencing_replicate1


title: Lung_15M_41

description:
P2_C10_JV_R_15M_ZT18-31574593
technical_replicate2
sequencing_replicate1


title: Lung_15M_40

description:
P2_B9_JV_R_15M_ZT46-31559673
technical_replicate2
sequencing_replicate1


title: Lung_15M_17

description:
P1_C6_JV_R_15M_ZT8-31568596
technical_replicate1
sequencing_replicate1


title: Lung_15M_38

description:
P2_B7_JV_R_15M_ZT34-31573609
technical_replicate2
sequencing_replicate1


title: Lung_15M_18

description:
P1_C7_JV_R_15M_ZT4-31571595
technical_replicate1
sequencing_replicate1


title: Lung_15M_37

description:
P2_B6_JV_R_15M_ZT26-31558689
technical_replicate2
sequencing_replicate1


title: Lung_15M_15

description:
P1_C4_JV_R_15M_ZT54-31573587
technical_replicate1
sequencing_replicate1


title: Lung_15M_35

description:
P2_B4_JV_R_15M_ZT52-31575602
technical_replicate2
sequencing_replicate1


title: Lung_15M_34

description:
P2_B3_JV_R_15M_ZT32-31556665
technical_replicate2
sequencing_replicate1


title: Lung_15M_33

description:
P2_B2_JV_R_15M_ZT58-31576592
technical_replicate2
sequencing_replicate1


title: Lung_15M_28

description:
P1_D7_JV_R_15M_ZT6-31573599
technical_replicate1
sequencing_replicate1


title: Lung_15M_11

description:
P1_C10_JV_R_15M_ZT32-31557665
technical_replicate1
sequencing_replicate1


title: Lung_15M_29

description:
P1_D8_JV_R_15M_ZT24-31559668
technical_replicate1
sequencing_replicate1


title: Lung_15M_9

description:
P1_B8_JV_R_15M_ZT16-31558670
technical_replicate1
sequencing_replicate1


title: Lung_15M_26

description:
P1_D5_JV_R_15M_ZT44-31568598
technical_replicate1
sequencing_replicate1


title: Lung_15M_27

description:
P1_D6_JV_R_15M_ZT42-31574585
technical_replicate1
sequencing_replicate1


title: Lung_15M_25

description:
P1_D4_JV_R_15M_ZT34-31556662
technical_replicate1
sequencing_replicate1


title: Lung_15M_47

description:
P2_C6_JV_R_15M_ZT28-31572586
technical_replicate2
sequencing_replicate1


title: Lung_15M_5

description:
P1_B4_JV_R_15M_ZT30-31573582
technical_replicate1
sequencing_replicate1


title: Lung_15M_22

description:
P1_D11_JV_R_15M_ZT22-31574582
technical_replicate1
sequencing_replicate1


title: Lung_15M_21

description:
P1_D10_JV_R_15M_ZT56-31576589
technical_replicate1
sequencing_replicate1


title: Lung_15M_2

description:
P1_B11_JV_R_15M_ZT40-31563626
technical_replicate1
sequencing_replicate1


title: Lung_15M_20

description:
P1_C9_JV_R_15M_ZT2-31560680
technical_replicate1
sequencing_replicate1


title: Lung_15M_19

description:
P1_C8_JV_R_15M_ZT52-31560676
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_88

description:
P3_D7_JV_L_OXBS_9M_ZT14-36447473
technical_replicate3
sequencing_replicate1

source_name: Liver

value: Liver

value: oxybisulfite


title: Lung_15M_16

description:
P1_C5_JV_R_15M_ZT38-31557668
technical_replicate1
sequencing_replicate1


title: Lung_15M_14

description:
P1_C3_JV_R_15M_ZT26-31571593
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_87

description:
P3_D6_JV_L_OXBS_9M_ZT6-36456472
technical_replicate3
sequencing_replicate1


title: Lung_15M_7

description:
P1_B6_JV_R_15M_ZT20-31575576
technical_replicate1
sequencing_replicate1


title: Lung_15M_12

description:
P1_C11_JV_R_15M_ZT28-31570588
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_90

description:
P3_D9_JV_L_OXBS_9M_ZT46-36442472
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_85

description:
P3_D4_JV_L_OXBS_9M_ZT50-36443474
technical_replicate3
sequencing_replicate1


title: Lung_15M_10

description:
P1_B9_JV_R_15M_ZT14-31563630
technical_replicate1
sequencing_replicate1


title: Lung_15M_8

description:
P1_B7_JV_R_15M_ZT10-31571589
technical_replicate1
sequencing_replicate1


title: Lung_15M_6

description:
P1_B5_JV_R_15M_ZT48-31577552
technical_replicate1
sequencing_replicate1


title: Lung_15M_4

description:
P1_B3_JV_R_15M_ZT50-31557659
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_81

description:
P3_D10_JV_L_OXBS_9M_ZT32-36448474
technical_replicate3
sequencing_replicate1


title: Lung_15M_3

description:
P1_B2_JV_R_15M_ZT18-31561652
technical_replicate1
sequencing_replicate1


title: Lung_15M_1

description:
P1_B10_JV_R_15M_ZT46-31559646
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_79

description:
P3_C8_JV_L_OXBS_9M_ZT16-36443466
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_89

description:
P3_D8_JV_L_OXBS_9M_ZT36-36453485
technical_replicate3
sequencing_replicate1


title: Lung_15M_13

description:
P1_C2_JV_R_15M_ZT36-31571592
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_78

description:
P3_C7_JV_L_OXBS_9M_ZT2-36443465
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_84

description:
P3_D3_JV_L_OXBS_9M_ZT38-36450485
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_86

description:
P3_D5_JV_L_OXBS_9M_ZT40-36444459
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_74

description:
P3_C3_JV_L_OXBS_9M_ZT54-36445462
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_72

description:
P3_C11_JV_L_OXBS_9M_ZT48-36457477
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_83

description:
P3_D2_JV_L_OXBS_9M_ZT52-36445468
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_71

description:
P3_C10_JV_L_OXBS_9M_ZT0-36443463
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_82

description:
P3_D11_JV_L_OXBS_9M_ZT24-36454480
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_68

description:
P3_B7_JV_L_OXBS_9M_ZT26-36457476
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_80

description:
P3_C9_JV_L_OXBS_9M_ZT4-36452492
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_67

description:
P3_B6_JV_L_OXBS_9M_ZT44-36449477
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_77

description:
P3_C6_JV_L_OXBS_9M_ZT56-36444456
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_63

description:
P3_B2_JV_L_OXBS_9M_ZT20-36457472
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_61

description:
P3_B10_JV_L_OXBS_9M_ZT18-36456462
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_73

description:
P3_C2_JV_L_OXBS_9M_ZT22-36456467
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_75

description:
P3_C4_JV_L_OXBS_9M_ZT42-36447465
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_70

description:
P3_B9_JV_L_OXBS_9M_ZT34-36445461
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_58

description:
P2_D7_JV_L_OXBS_9M_ZT46-36445453
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_69

description:
P3_B8_JV_L_OXBS_9M_ZT30-36444454
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_65

description:
P3_B4_JV_L_OXBS_9M_ZT8-36452481
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_53

description:
P2_D2_JV_L_OXBS_9M_ZT54-36459463
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_51

description:
P2_D10_JV_L_OXBS_9M_ZT18-36451466
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_50

description:
P2_C9_JV_L_OXBS_9M_ZT0-36446452
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_62

description:
P3_B11_JV_L_OXBS_9M_ZT28-36457470
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_76

description:
P3_C5_JV_L_OXBS_9M_ZT10-36446464
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_60

description:
P2_D9_JV_L_OXBS_9M_ZT26-36451471
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_52

description:
P2_D11_JV_L_OXBS_9M_ZT52-36443453
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_48

description:
P2_C7_JV_L_OXBS_9M_ZT24-36449462
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_66

description:
P3_B5_JV_L_OXBS_9M_ZT12-36452483
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_57

description:
P2_D6_JV_L_OXBS_9M_ZT22-36456459
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_43

description:
P2_C2_JV_L_OXBS_9M_ZT38-36457456
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_56

description:
P2_D5_JV_L_OXBS_9M_ZT10-36450475
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_55

description:
P2_D4_JV_L_OXBS_9M_ZT4-36454464
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_54

description:
P2_D3_JV_L_OXBS_9M_ZT32-36455469
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_49

description:
P2_C8_JV_L_OXBS_9M_ZT14-36454460
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_47

description:
P2_C6_JV_L_OXBS_9M_ZT12-36449461
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_38

description:
P2_B7_JV_L_OXBS_9M_ZT48-36459449
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_59

description:
P2_D8_JV_L_OXBS_9M_ZT30-36455471
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_37

description:
P2_B6_JV_L_OXBS_9M_ZT20-36448447
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_64

description:
P3_B3_JV_L_OXBS_9M_ZT58-36444449
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_35

description:
P2_B4_JV_L_OXBS_9M_ZT16-36459447
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_45

description:
P2_C4_JV_L_OXBS_9M_ZT50-36443443
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_46

description:
P2_C5_JV_L_OXBS_9M_ZT8-36457458
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_44

description:
P2_C3_JV_L_OXBS_9M_ZT36-36450460
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_39

description:
P2_B8_JV_L_OXBS_9M_ZT34-36447442
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_42

description:
P2_C11_JV_L_OXBS_9M_ZT28-36448450
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_33

description:
P2_B2_JV_L_OXBS_9M_ZT56-36449450
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_30

description:
P1_D9_JV_L_OXBS_9M_ZT24-36457448
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_26

description:
P1_D5_JV_L_OXBS_9M_ZT50-36459443
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_41

description:
P2_C10_JV_L_OXBS_9M_ZT42-36453455
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_24

description:
P1_D3_JV_L_OXBS_9M_ZT30-36442441
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_34

description:
P2_B3_JV_L_OXBS_9M_ZT58-36449451
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_36

description:
P2_B5_JV_L_OXBS_9M_ZT40-36451457
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_31

description:
P2_B10_JV_L_OXBS_9M_ZT44-36455450
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_32

description:
P2_B11_JV_L_OXBS_9M_ZT2-36444426
technical_replicate2
sequencing_replicate1


title: Liver_9M_oxBS_21

description:
P1_D10_JV_L_OXBS_9M_ZT14-36450438
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_29

description:
P1_D8_JV_L_OXBS_9M_ZT8-36454448
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_28

description:
P1_D7_JV_L_OXBS_9M_ZT56-36457445
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_13

description:
P1_C2_JV_L_OXBS_9M_ZT16-36444416
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_8

description:
P1_B7_JV_L_OXBS_9M_ZT48-36448428
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_6

description:
P1_B5_JV_L_OXBS_9M_ZT36-36452433
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_27

description:
P1_D6_JV_L_OXBS_9M_ZT34-36450444
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_25

description:
P1_D4_JV_L_OXBS_9M_ZT46-36459441
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_22

description:
P1_D11_JV_L_OXBS_9M_ZT54-36449442
technical_replicate1
sequencing_replicate1


title: Liver_9M_209

description:
P3_E7_JV_L_9M_ZT32-27829841
technical_replicate3
sequencing_replicate2


title: Liver_9M_oxBS_23

description:
P1_D2_JV_L_OXBS_9M_ZT2-36452442
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_10

description:
P1_B9_JV_L_OXBS_9M_ZT18-36455437
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_40

description:
P2_B9_JV_L_OXBS_9M_ZT6-36454454
technical_replicate2
sequencing_replicate1


title: Liver_9M_207

description:
P3_E6_JV_L_9M_ZT8-27832821
technical_replicate3
sequencing_replicate2


title: Liver_9M_oxBS_3

description:
P1_B2_JV_L_OXBS_9M_ZT28-36443419
technical_replicate1
sequencing_replicate1


title: Liver_9M_206

description:
P3_E6_JV_L_9M_ZT8-27829840
technical_replicate3
sequencing_replicate1


title: Liver_9M_204

description:
P3_E4_JV_L_9M_ZT42-27821868
technical_replicate3
sequencing_replicate2


title: Liver_9M_203

description:
P3_E4_JV_L_9M_ZT42-27810880
technical_replicate3
sequencing_replicate1


title: Liver_9M_202

description:
P3_E11_JV_L_9M_ZT28-27813884
technical_replicate3
sequencing_replicate2


title: Liver_9M_oxBS_20

description:
P1_C9_JV_L_OXBS_9M_ZT10-36454440
technical_replicate1
sequencing_replicate1


title: Liver_9M_205

description:
P3_E5_JV_L_9M_ZT52-27811887
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_19

description:
P1_C8_JV_L_OXBS_9M_ZT58-36442432
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_17

description:
P1_C6_JV_L_OXBS_9M_ZT32-36443427
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_16

description:
P1_C5_JV_L_OXBS_9M_ZT42-36447427
technical_replicate1
sequencing_replicate1


title: Liver_9M_201

description:
P3_E11_JV_L_9M_ZT28-27810887
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_15

description:
P1_C4_JV_L_OXBS_9M_ZT26-36447425
technical_replicate1
sequencing_replicate1


title: Liver_9M_200

description:
P3_E10_JV_L_9M_ZT40-27826855
technical_replicate3
sequencing_replicate2


title: Liver_9M_oxBS_14

description:
P1_C3_JV_L_OXBS_9M_ZT52-36451436
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_12

description:
P1_C11_JV_L_OXBS_9M_ZT44-36456436
technical_replicate1
sequencing_replicate1


title: Liver_9M_197

description:
P3_D9_JV_L_9M_ZT18-27814871
technical_replicate3
sequencing_replicate1


title: Liver_9M_oxBS_18

description:
P1_C7_JV_L_OXBS_9M_ZT38-36445429
technical_replicate1
sequencing_replicate1


title: Liver_9M_196

description:
P3_D8_JV_L_9M_ZT26-27822860
technical_replicate3
sequencing_replicate2


title: Liver_9M_194

description:
P3_D7_JV_L_9M_ZT58-27827852
technical_replicate3
sequencing_replicate2


title: Liver_9M_oxBS_9

description:
P1_B8_JV_L_OXBS_9M_ZT22-36448430
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_7

description:
P1_B6_JV_L_OXBS_9M_ZT0-36447423
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_11

description:
P1_C10_JV_L_OXBS_9M_ZT40-36453434
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_5

description:
P1_B4_JV_L_OXBS_9M_ZT4-36442423
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_4

description:
P1_B3_JV_L_OXBS_9M_ZT6-36452431
technical_replicate1
sequencing_replicate1


title: Liver_9M_oxBS_1

description:
P1_B10_JV_L_OXBS_9M_ZT12-36448426
technical_replicate1
sequencing_replicate1


title: Liver_9M_212

description:
P3_E9_JV_L_9M_ZT36-27825859
technical_replicate3
sequencing_replicate1


title: Liver_9M_213

description:
P3_E9_JV_L_9M_ZT36-27827854
technical_replicate3
sequencing_replicate2


title: Liver_9M_oxBS_2

description:
P1_B11_JV_L_OXBS_9M_ZT20-36448427
technical_replicate1
sequencing_replicate1


title: Liver_9M_189

description:
P3_D4_JV_L_9M_ZT44-27826854
technical_replicate3
sequencing_replicate1


title: Liver_9M_186

description:
P3_D2_JV_L_9M_ZT68-27827859
technical_replicate3
sequencing_replicate2


title: Liver_9M_210

description:
P3_E8_JV_L_9M_ZT24-27814873
technical_replicate3
sequencing_replicate1


title: Liver_9M_185

description:
P3_D2_JV_L_9M_ZT68-27810879
technical_replicate3
sequencing_replicate1


title: Liver_9M_195

description:
P3_D8_JV_L_9M_ZT26-27814870
technical_replicate3
sequencing_replicate1


title: Liver_9M_208

description:
P3_E7_JV_L_9M_ZT32-27814872
technical_replicate3
sequencing_replicate1


title: Liver_9M_199

description:
P3_E10_JV_L_9M_ZT40-27820873
technical_replicate3
sequencing_replicate1


title: Liver_9M_192

description:
P3_D5_JV_L_9M_ZT70-27821867
technical_replicate3
sequencing_replicate2


title: Liver_9M_191

description:
P3_D5_JV_L_9M_ZT70-27813883
technical_replicate3
sequencing_replicate1


title: Liver_9M_193

description:
P3_D7_JV_L_9M_ZT58-27815879
technical_replicate3
sequencing_replicate1


title: Liver_9M_198

description:
P3_D9_JV_L_9M_ZT18-27832829
technical_replicate3
sequencing_replicate2


title: Liver_9M_190

description:
P3_D4_JV_L_9M_ZT44-27829839
technical_replicate3
sequencing_replicate2


title: Liver_9M_176

description:
P3_C6_JV_L_9M_ZT54-27827858
technical_replicate3
sequencing_replicate2


title: Liver_9M_188

description:
P3_D3_JV_L_9M_ZT22-27822855
technical_replicate3
sequencing_replicate2


title: Liver_9M_187

description:
P3_D3_JV_L_9M_ZT22-27814879
technical_replicate3
sequencing_replicate1


title: Liver_9M_174

description:
P3_C5_JV_L_9M_ZT12-27832828
technical_replicate3
sequencing_replicate2


title: Liver_9M_173

description:
P3_C5_JV_L_9M_ZT12-27825855
technical_replicate3
sequencing_replicate1


title: Liver_9M_171

description:
P3_C4_JV_L_9M_ZT30-27822859
technical_replicate3
sequencing_replicate1


title: Liver_9M_184

description:
P3_D11_JV_L_9M_ZT20-27827853
technical_replicate3
sequencing_replicate2


title: Liver_9M_178

description:
P3_C7_JV_L_9M_ZT50-27826853
technical_replicate3
sequencing_replicate2


title: Liver_9M_183

description:
P3_D11_JV_L_9M_ZT20-27819867
technical_replicate3
sequencing_replicate1


title: Liver_9M_164

description:
P3_C10_JV_L_9M_ZT38-27814878
technical_replicate3
sequencing_replicate2


title: Liver_9M_167

description:
P3_C2_JV_L_9M_ZT16-27813889
technical_replicate3
sequencing_replicate1


title: Liver_9M_159

description:
P3_B8_JV_L_9M_ZT46-27813880
technical_replicate3
sequencing_replicate1


title: Liver_9M_156

description:
P3_B6_JV_L_9M_ZT6-27812875
technical_replicate3
sequencing_replicate2


title: Liver_9M_181

description:
P3_C9_JV_L_9M_ZT56-27813882
technical_replicate3
sequencing_replicate1


title: Liver_9M_182

description:
P3_C9_JV_L_9M_ZT56-27821866
technical_replicate3
sequencing_replicate2


title: Liver_9M_180

description:
P3_C8_JV_L_9M_ZT48-27829838
technical_replicate3
sequencing_replicate2


title: Liver_9M_179

description:
P3_C8_JV_L_9M_ZT48-27813881
technical_replicate3
sequencing_replicate1


title: Liver_9M_150

description:
P3_B2_JV_L_9M_ZT10-27819859
technical_replicate3
sequencing_replicate2


title: Liver_9M_148

description:
P3_B11_JV_L_9M_ZT62-27832827
technical_replicate3
sequencing_replicate2


title: Liver_9M_151

description:
P3_B3_JV_L_9M_ZT64-27823860
technical_replicate3
sequencing_replicate1


title: Liver_9M_175

description:
P3_C6_JV_L_9M_ZT54-27821862
technical_replicate3
sequencing_replicate1


title: Liver_9M_172

description:
P3_C4_JV_L_9M_ZT30-27831835
technical_replicate3
sequencing_replicate2


title: Liver_9M_170

description:
P3_C3_JV_L_9M_ZT0-27832820
technical_replicate3
sequencing_replicate2


title: Liver_9M_169

description:
P3_C3_JV_L_9M_ZT0-27823861
technical_replicate3
sequencing_replicate1


title: Liver_9M_168

description:
P3_C2_JV_L_9M_ZT16-27832819
technical_replicate3
sequencing_replicate2


title: Liver_9M_166

description:
P3_C11_JV_L_9M_ZT66-27827851
technical_replicate3
sequencing_replicate2


title: Liver_9M_144

description:
P2_E9_JV_L_9M_ZT4-27815878
technical_replicate2
sequencing_replicate2


title: Liver_9M_157

description:
P3_B7_JV_L_9M_ZT34-27819860
technical_replicate3
sequencing_replicate1


title: Liver_9M_158

description:
P3_B7_JV_L_9M_ZT34-27825858
technical_replicate3
sequencing_replicate2


title: Liver_9M_140

description:
P2_E7_JV_L_9M_ZT46-27829837
technical_replicate2
sequencing_replicate2


title: Liver_9M_162

description:
P3_B9_JV_L_9M_ZT2-27821865
technical_replicate3
sequencing_replicate2


title: Liver_9M_163

description:
P3_C10_JV_L_9M_ZT38-27814869
technical_replicate3
sequencing_replicate1


title: Liver_9M_160

description:
P3_B8_JV_L_9M_ZT46-27827857
technical_replicate3
sequencing_replicate2


title: Liver_9M_161

description:
P3_B9_JV_L_9M_ZT2-27819861
technical_replicate3
sequencing_replicate1


title: Liver_9M_155

description:
P3_B6_JV_L_9M_ZT6-27809882
technical_replicate3
sequencing_replicate1


title: Liver_9M_131

description:
P2_E3_JV_L_9M_ZT34-27821859
technical_replicate2
sequencing_replicate1


title: Liver_9M_154

description:
P3_B4_JV_L_9M_ZT60-27832818
technical_replicate3
sequencing_replicate2


title: Liver_9M_134

description:
P2_E4_JV_L_9M_ZT26-27824842
technical_replicate2
sequencing_replicate2


title: Liver_9M_153

description:
P3_B4_JV_L_9M_ZT60-27821864
technical_replicate3
sequencing_replicate1


title: Liver_9M_152

description:
P3_B3_JV_L_9M_ZT64-27824843
technical_replicate3
sequencing_replicate2


title: Liver_9M_149

description:
P3_B2_JV_L_9M_ZT10-27812874
technical_replicate3
sequencing_replicate1


title: Liver_9M_165

description:
P3_C11_JV_L_9M_ZT66-27824847
technical_replicate3
sequencing_replicate1


title: Liver_9M_125

description:
P2_E10_JV_L_9M_ZT10-27812870
technical_replicate2
sequencing_replicate1


title: Liver_9M_128

description:
P2_E11_JV_L_9M_ZT42-27827856
technical_replicate2
sequencing_replicate2


title: Liver_9M_127

description:
P2_E11_JV_L_9M_ZT42-27809881
technical_replicate2
sequencing_replicate1


title: Liver_9M_124

description:
P2_D9_JV_L_9M_ZT56-27832817
technical_replicate2
sequencing_replicate2


title: Liver_9M_146

description:
P3_B10_JV_L_9M_ZT4-27821861
technical_replicate3
sequencing_replicate2


title: Liver_9M_147

description:
P3_B11_JV_L_9M_ZT62-27814868
technical_replicate3
sequencing_replicate1


title: Liver_9M_145

description:
P3_B10_JV_L_9M_ZT4-27820871
technical_replicate3
sequencing_replicate1


title: Liver_9M_122

description:
P2_D8_JV_L_9M_ZT60-27813888
technical_replicate2
sequencing_replicate2


title: Liver_9M_142

description:
P2_E8_JV_L_9M_ZT2-27832826
technical_replicate2
sequencing_replicate2


title: Liver_9M_120

description:
P2_D7_JV_L_9M_ZT14-27831833
technical_replicate2
sequencing_replicate2


title: Liver_9M_118

description:
P2_D6_JV_L_9M_ZT54-27829834
technical_replicate2
sequencing_replicate2


title: Liver_9M_139

description:
P2_E7_JV_L_9M_ZT46-27811886
technical_replicate2
sequencing_replicate1


title: Liver_9M_138

description:
P2_E6_JV_L_9M_ZT58-27827850
technical_replicate2
sequencing_replicate2


title: Liver_9M_113

description:
P2_D4_JV_L_9M_ZT70-27811892
technical_replicate2
sequencing_replicate1


title: Liver_9M_177

description:
P3_C7_JV_L_9M_ZT50-27820872
technical_replicate3
sequencing_replicate1


title: Liver_9M_108

description:
P2_D11_JV_L_9M_ZT28-27829835
technical_replicate2
sequencing_replicate2


title: Liver_9M_119

description:
P2_D7_JV_L_9M_ZT14-27820869
technical_replicate2
sequencing_replicate1


title: Liver_9M_135

description:
P2_E5_JV_L_9M_ZT50-27810886
technical_replicate2
sequencing_replicate1


title: Liver_9M_136

description:
P2_E5_JV_L_9M_ZT50-27821860
technical_replicate2
sequencing_replicate2


title: Liver_9M_104

description:
P2_C7_JV_L_9M_ZT32-27833810
technical_replicate2
sequencing_replicate2


title: Liver_9M_102

description:
P2_C6_JV_L_9M_ZT30-27810884
technical_replicate2
sequencing_replicate2


title: Liver_9M_143

description:
P2_E9_JV_L_9M_ZT4-27810878
technical_replicate2
sequencing_replicate1


title: Liver_9M_141

description:
P2_E8_JV_L_9M_ZT2-27812869
technical_replicate2
sequencing_replicate1


title: Liver_9M_130

description:
P2_E2_JV_L_9M_ZT8-27831841
technical_replicate2
sequencing_replicate2


title: Liver_9M_97

description:
P2_C3_JV_L_9M_ZT68-27815877
technical_replicate2
sequencing_replicate1


title: Liver_9M_137

description:
P2_E6_JV_L_9M_ZT58-27825857
technical_replicate2
sequencing_replicate1


title: Liver_9M_96

description:
P2_C2_JV_L_9M_ZT38-27813887
technical_replicate2
sequencing_replicate2


title: Liver_9M_126

description:
P2_E10_JV_L_9M_ZT10-27833811
technical_replicate2
sequencing_replicate2


title: Liver_9M_129

description:
P2_E2_JV_L_9M_ZT8-27831834
technical_replicate2
sequencing_replicate1


title: Liver_9M_133

description:
P2_E4_JV_L_9M_ZT26-27820870
technical_replicate2
sequencing_replicate1


title: Liver_9M_132

description:
P2_E3_JV_L_9M_ZT34-27829836
technical_replicate2
sequencing_replicate2


title: Liver_9M_123

description:
P2_D9_JV_L_9M_ZT56-27814877
technical_replicate2
sequencing_replicate1


title: Liver_9M_121

description:
P2_D8_JV_L_9M_ZT60-27809879
technical_replicate2
sequencing_replicate1


title: Liver_9M_93

description:
P2_C11_JV_L_9M_ZT24-27812873
technical_replicate2
sequencing_replicate1


title: Liver_9M_116

description:
P2_D5_JV_L_9M_ZT6-27825853
technical_replicate2
sequencing_replicate2


title: Liver_9M_115

description:
P2_D5_JV_L_9M_ZT6-27823859
technical_replicate2
sequencing_replicate1


title: Liver_9M_117

description:
P2_D6_JV_L_9M_ZT54-27825854
technical_replicate2
sequencing_replicate1


title: Liver_9M_112

description:
P2_D3_JV_L_9M_ZT20-27832825
technical_replicate2
sequencing_replicate2


title: Liver_9M_110

description:
P2_D2_JV_L_9M_ZT18-27820865
technical_replicate2
sequencing_replicate2


title: Liver_9M_111

description:
P2_D3_JV_L_9M_ZT20-27824841
technical_replicate2
sequencing_replicate1


title: Liver_9M_109

description:
P2_D2_JV_L_9M_ZT18-27811891
technical_replicate2
sequencing_replicate1


title: Liver_9M_86

description:
P2_B7_JV_L_9M_ZT44-27831829
technical_replicate2
sequencing_replicate2


title: Liver_9M_114

description:
P2_D4_JV_L_9M_ZT70-27822854
technical_replicate2
sequencing_replicate2


title: Liver_9M_88

description:
P2_B8_JV_L_9M_ZT64-27831830
technical_replicate2
sequencing_replicate2


title: Liver_9M_107

description:
P2_D11_JV_L_9M_ZT28-27809880
technical_replicate2
sequencing_replicate1


title: Liver_9M_105

description:
P2_C8_JV_L_9M_ZT16-27819858
technical_replicate2
sequencing_replicate1


title: Liver_9M_103

description:
P2_C7_JV_L_9M_ZT32-27812868
technical_replicate2
sequencing_replicate1


title: Liver_9M_106

description:
P2_C8_JV_L_9M_ZT16-27819866
technical_replicate2
sequencing_replicate2


title: Liver_9M_82

description:
P2_B4_JV_L_9M_ZT0-27814867
technical_replicate2
sequencing_replicate2


title: Liver_9M_83

description:
P2_B5_JV_L_9M_ZT52-27819864
technical_replicate2
sequencing_replicate1


title: Liver_9M_101

description:
P2_C6_JV_L_9M_ZT30-27810877
technical_replicate2
sequencing_replicate1


title: Liver_9M_99

description:
P2_C4_JV_L_9M_ZT12-27822858
technical_replicate2
sequencing_replicate1


title: Liver_9M_79

description:
P2_B3_JV_L_9M_ZT48-27820863
technical_replicate2
sequencing_replicate1


title: Liver_9M_81

description:
P2_B4_JV_L_9M_ZT0-27813886
technical_replicate2
sequencing_replicate1


title: Liver_9M_78

description:
P2_B2_JV_L_9M_ZT66-27833809
technical_replicate2
sequencing_replicate2


title: Liver_9M_98

description:
P2_C3_JV_L_9M_ZT68-27826852
technical_replicate2
sequencing_replicate2


title: Liver_9M_77

description:
P2_B2_JV_L_9M_ZT66-27826851
technical_replicate2
sequencing_replicate1


title: Liver_9M_100

description:
P2_C4_JV_L_9M_ZT12-27827849
technical_replicate2
sequencing_replicate2


title: Liver_9M_75

description:
P2_B11_JV_L_9M_ZT22-27831832
technical_replicate2
sequencing_replicate1


title: Liver_9M_74

description:
P2_B10_JV_L_9M_ZT36-27824839
technical_replicate2
sequencing_replicate2


title: Liver_9M_95

description:
P2_C2_JV_L_9M_ZT38-27813879
technical_replicate2
sequencing_replicate1


title: Liver_9M_94

description:
P2_C11_JV_L_9M_ZT24-27815873
technical_replicate2
sequencing_replicate2


title: Liver_9M_73

description:
P2_B10_JV_L_9M_ZT36-27811890
technical_replicate2
sequencing_replicate1


title: Liver_9M_92

description:
P2_C10_JV_L_9M_ZT40-27824840
technical_replicate2
sequencing_replicate2


title: Liver_9M_91

description:
P2_C10_JV_L_9M_ZT40-27810885
technical_replicate2
sequencing_replicate1


title: Liver_9M_70

description:
P1_E8_JV_L_9M_ZT42-27825856
technical_replicate1
sequencing_replicate2


title: Liver_9M_89

description:
P2_B9_JV_L_9M_ZT62-27810883
technical_replicate2
sequencing_replicate1


title: Liver_9M_87

description:
P2_B8_JV_L_9M_ZT64-27819865
technical_replicate2
sequencing_replicate1


title: Liver_9M_85

description:
P2_B7_JV_L_9M_ZT44-27815876
technical_replicate2
sequencing_replicate1


title: Liver_9M_84

description:
P2_B5_JV_L_9M_ZT52-27820864
technical_replicate2
sequencing_replicate2


title: Liver_9M_66

description:
P1_E6_JV_L_9M_ZT62-27829833
technical_replicate1
sequencing_replicate2


title: Liver_9M_62

description:
P1_E4_JV_L_9M_ZT38-27827847
technical_replicate1
sequencing_replicate2


title: Liver_9M_65

description:
P1_E6_JV_L_9M_ZT62-27825852
technical_replicate1
sequencing_replicate1


title: Liver_9M_61

description:
P1_E4_JV_L_9M_ZT38-27820868
technical_replicate1
sequencing_replicate1


title: Liver_9M_80

description:
P2_B3_JV_L_9M_ZT48-27831840
technical_replicate2
sequencing_replicate2


title: Liver_9M_90

description:
P2_B9_JV_L_9M_ZT62-27831831
technical_replicate2
sequencing_replicate2


title: Liver_9M_58

description:
P1_E2_JV_L_9M_ZT8-27831828
technical_replicate1
sequencing_replicate2


title: Liver_9M_57

description:
P1_E2_JV_L_9M_ZT8-27821863
technical_replicate1
sequencing_replicate1


title: Liver_9M_71

description:
P1_E9_JV_L_9M_ZT16-27811889
technical_replicate1
sequencing_replicate1


title: Liver_9M_56

description:
P1_E11_JV_L_9M_ZT32-27815875
technical_replicate1
sequencing_replicate2


title: Liver_9M_72

description:
P1_E9_JV_L_9M_ZT16-27824838
technical_replicate1
sequencing_replicate2


title: Liver_9M_52

description:
P1_D9_JV_L_9M_ZT44-27833808
technical_replicate1
sequencing_replicate2


title: Liver_9M_55

description:
P1_E11_JV_L_9M_ZT32-27814866
technical_replicate1
sequencing_replicate1


title: Liver_9M_50

description:
P1_D8_JV_L_9M_ZT34-27824846
technical_replicate1
sequencing_replicate2


title: Liver_9M_51

description:
P1_D9_JV_L_9M_ZT44-27813878
technical_replicate1
sequencing_replicate1


title: Liver_9M_48

description:
P1_D7_JV_L_9M_ZT6-27832823
technical_replicate1
sequencing_replicate2


title: Liver_9M_47

description:
P1_D7_JV_L_9M_ZT6-27831827
technical_replicate1
sequencing_replicate1


title: Liver_9M_69

description:
P1_E8_JV_L_9M_ZT42-27812867
technical_replicate1
sequencing_replicate1


title: Liver_9M_76

description:
P2_B11_JV_L_9M_ZT22-27832824
technical_replicate2
sequencing_replicate2


title: Liver_9M_68

description:
P1_E7_JV_L_9M_ZT24-27824837
technical_replicate1
sequencing_replicate2


title: Liver_9M_42

description:
P1_D3_JV_L_9M_ZT46-27815874
technical_replicate1
sequencing_replicate2


title: Liver_9M_43

description:
P1_D4_JV_L_9M_ZT28-27821858
technical_replicate1
sequencing_replicate1


title: Liver_9M_41

description:
P1_D3_JV_L_9M_ZT46-27811885
technical_replicate1
sequencing_replicate1


title: Liver_9M_39

description:
P1_D2_JV_L_9M_ZT18-27831826
technical_replicate1
sequencing_replicate1


title: Liver_9M_54

description:
P1_E10_JV_L_9M_ZT52-27827848
technical_replicate1
sequencing_replicate2


title: Liver_9M_37

description:
P1_D10_JV_L_9M_ZT22-27812872
technical_replicate1
sequencing_replicate1


title: Liver_9M_67

description:
P1_E7_JV_L_9M_ZT24-27819863
technical_replicate1
sequencing_replicate1


title: Liver_9M_38

description:
P1_D10_JV_L_9M_ZT22-27827846
technical_replicate1
sequencing_replicate2


title: Liver_9M_60

description:
P1_E3_JV_L_9M_ZT2-27831839
technical_replicate1
sequencing_replicate2


title: Liver_9M_64

description:
P1_E5_JV_L_9M_ZT68-27832816
technical_replicate1
sequencing_replicate2


title: Liver_9M_63

description:
P1_E5_JV_L_9M_ZT68-27823858
technical_replicate1
sequencing_replicate1


title: Liver_9M_49

description:
P1_D8_JV_L_9M_ZT34-27812865
technical_replicate1
sequencing_replicate1


title: Liver_9M_59

description:
P1_E3_JV_L_9M_ZT2-27812866
technical_replicate1
sequencing_replicate1


title: Liver_9M_53

description:
P1_E10_JV_L_9M_ZT52-27826859
technical_replicate1
sequencing_replicate1


title: Liver_9M_30

description:
P1_C6_JV_L_9M_ZT20-27822857
technical_replicate1
sequencing_replicate2


title: Liver_9M_26

description:
P1_C4_JV_L_9M_ZT4-27832815
technical_replicate1
sequencing_replicate2


title: Liver_9M_45

description:
P1_D5_JV_L_9M_ZT40-27810882
technical_replicate1
sequencing_replicate1


title: Liver_9M_25

description:
P1_C4_JV_L_9M_ZT4-27814876
technical_replicate1
sequencing_replicate1


title: Liver_9M_20

description:
P1_C11_JV_L_9M_ZT12-27833807
technical_replicate1
sequencing_replicate2


title: Liver_9M_35

description:
P1_C9_JV_L_9M_ZT66-27815872
technical_replicate1
sequencing_replicate1


title: Liver_9M_33

description:
P1_C8_JV_L_9M_ZT36-27819856
technical_replicate1
sequencing_replicate1


title: Liver_9M_32

description:
P1_C7_JV_L_9M_ZT50-27815871
technical_replicate1
sequencing_replicate2


title: Liver_9M_46

description:
P1_D5_JV_L_9M_ZT40-27819857
technical_replicate1
sequencing_replicate2


title: Liver_9M_36

description:
P1_C9_JV_L_9M_ZT66-27823857
technical_replicate1
sequencing_replicate2


title: Liver_9M_34

description:
P1_C8_JV_L_9M_ZT36-27823856
technical_replicate1
sequencing_replicate2


title: Liver_9M_24

description:
P1_C3_JV_L_9M_ZT60-27833806
technical_replicate1
sequencing_replicate2


title: Liver_9M_44

description:
P1_D4_JV_L_9M_ZT28-27832822
technical_replicate1
sequencing_replicate2


title: Liver_9M_19

description:
P1_C11_JV_L_9M_ZT12-27820862
technical_replicate1
sequencing_replicate1


title: Liver_9M_40

description:
P1_D2_JV_L_9M_ZT18-27831838
technical_replicate1
sequencing_replicate2


title: Liver_9M_18

description:
P1_B8_JV_L_9M_ZT56-27820867
technical_replicate1
sequencing_replicate2


title: Liver_9M_13

description:
P1_B6_JV_L_9M_ZT64-27824836
technical_replicate1
sequencing_replicate1


title: Liver_9M_29

description:
P1_C6_JV_L_9M_ZT20-27820861
technical_replicate1
sequencing_replicate1


title: Liver_9M_28

description:
P1_C5_JV_L_9M_ZT70-27823855
technical_replicate1
sequencing_replicate2


title: Liver_9M_27

description:
P1_C5_JV_L_9M_ZT70-27819855
technical_replicate1
sequencing_replicate1


title: Liver_9M_21

description:
P1_C2_JV_L_9M_ZT10-27814875
technical_replicate1
sequencing_replicate1


title: Liver_9M_22

description:
P1_C2_JV_L_9M_ZT10-27819854
technical_replicate1
sequencing_replicate2


title: Liver_9M_15

description:
P1_B7_JV_L_9M_ZT58-27819862
technical_replicate1
sequencing_replicate1


title: Liver_9M_17

description:
P1_B8_JV_L_9M_ZT56-27812864
technical_replicate1
sequencing_replicate1


title: Liver_9M_23

description:
P1_C3_JV_L_9M_ZT60-27811884
technical_replicate1
sequencing_replicate1


title: Liver_9M_14

description:
P1_B6_JV_L_9M_ZT64-27826857
technical_replicate1
sequencing_replicate2


title: Liver_9M_9

description:
P1_B4_JV_L_9M_ZT0-27820858
technical_replicate1
sequencing_replicate1


title: Liver_9M_31

description:
P1_C7_JV_L_9M_ZT50-27813885
technical_replicate1
sequencing_replicate1


title: Liver_9M_2

description:
P1_B10_JV_L_9M_ZT48-27826858
technical_replicate1
sequencing_replicate2


title: Liver_9M_3

description:
P1_B11_JV_L_9M_ZT54-27812871
technical_replicate1
sequencing_replicate1


title: Liver_9M_1

description:
P1_B10_JV_L_9M_ZT48-27813877
technical_replicate1
sequencing_replicate1


title: Liver_9M_12

description:
P1_B5_JV_L_9M_ZT30-27822856
technical_replicate1
sequencing_replicate2


title: Liver_9M_16

description:
P1_B7_JV_L_9M_ZT58-27820860
technical_replicate1
sequencing_replicate2


title: Liver_9M_11

description:
P1_B5_JV_L_9M_ZT30-27820859
technical_replicate1
sequencing_replicate1


title: Liver_9M_10

description:
P1_B4_JV_L_9M_ZT0-27829832
technical_replicate1
sequencing_replicate2


title: Liver_9M_6

description:
P1_B2_JV_L_9M_ZT14-27826850
technical_replicate1
sequencing_replicate2


title: Liver_25M_180

description:
P3_D9_JV_L_25M_ZT38-30394464
technical_replicate3
sequencing_replicate2


title: Liver_9M_4

description:
P1_B11_JV_L_9M_ZT54-27832814
technical_replicate1
sequencing_replicate2


title: Liver_25M_179

description:
P3_D9_JV_L_25M_ZT38-30349427
technical_replicate3
sequencing_replicate1


title: Liver_9M_5

description:
P1_B2_JV_L_9M_ZT14-27811888
technical_replicate1
sequencing_replicate1


title: Liver_9M_8

description:
P1_B3_JV_L_9M_ZT26-27814874
technical_replicate1
sequencing_replicate2


title: Liver_25M_173

description:
P3_D6_JV_L_25M_ZT42-30351431
technical_replicate3
sequencing_replicate1


title: Liver_25M_172

description:
P3_D5_JV_L_25M_ZT56-30391461
technical_replicate3
sequencing_replicate2


title: Liver_25M_178

description:
P3_D8_JV_L_25M_ZT40-30382433
technical_replicate3
sequencing_replicate2


title: Liver_25M_176

description:
P3_D7_JV_L_25M_ZT32-30379429
technical_replicate3
sequencing_replicate2


title: Liver_25M_171

description:
P3_D5_JV_L_25M_ZT56-30349425
technical_replicate3
sequencing_replicate1


title: Liver_25M_177

description:
P3_D8_JV_L_25M_ZT40-30337401
technical_replicate3
sequencing_replicate1


title: Liver_25M_174

description:
P3_D6_JV_L_25M_ZT42-30375446
technical_replicate3
sequencing_replicate2


title: Liver_9M_7

description:
P1_B3_JV_L_9M_ZT26-27814865
technical_replicate1
sequencing_replicate1


title: Liver_25M_163

description:
P3_D11_JV_L_25M_ZT58-30339417
technical_replicate3
sequencing_replicate1


title: Liver_25M_169

description:
P3_D4_JV_L_25M_ZT4-30349424
technical_replicate3
sequencing_replicate1


title: Liver_25M_161

description:
P3_D10_JV_L_25M_ZT2-30343415
technical_replicate3
sequencing_replicate1


title: Liver_25M_168

description:
P3_D3_JV_L_25M_ZT46-30382432
technical_replicate3
sequencing_replicate2


title: Liver_25M_159

description:
P3_C9_JV_L_25M_ZT26-30352414
technical_replicate3
sequencing_replicate1


title: Liver_25M_175

description:
P3_D7_JV_L_25M_ZT32-30349426
technical_replicate3
sequencing_replicate1


title: Liver_25M_158

description:
P3_C8_JV_L_25M_ZT20-30395451
technical_replicate3
sequencing_replicate2


title: Liver_25M_157

description:
P3_C8_JV_L_25M_ZT20-30330407
technical_replicate3
sequencing_replicate1


title: Liver_25M_150

description:
P3_C4_JV_L_25M_ZT54-30385430
technical_replicate3
sequencing_replicate2


title: Liver_25M_170

description:
P3_D4_JV_L_25M_ZT4-30373443
technical_replicate3
sequencing_replicate2


title: Liver_25M_147

description:
P3_C3_JV_L_25M_ZT22-30354405
technical_replicate3
sequencing_replicate1


title: Liver_25M_153

description:
P3_C6_JV_L_25M_ZT6-30339416
technical_replicate3
sequencing_replicate1


title: Liver_25M_167

description:
P3_D3_JV_L_25M_ZT46-30330409
technical_replicate3
sequencing_replicate1


title: Liver_25M_146

description:
P3_C2_JV_L_25M_ZT12-30381431
technical_replicate3
sequencing_replicate2


title: Liver_25M_148

description:
P3_C3_JV_L_25M_ZT22-30392440
technical_replicate3
sequencing_replicate2


title: Liver_25M_144

description:
P3_C11_JV_L_25M_ZT16-30393455
technical_replicate3
sequencing_replicate2


title: Liver_25M_143

description:
P3_C11_JV_L_25M_ZT16-30349423
technical_replicate3
sequencing_replicate1


title: Liver_25M_142

description:
P3_C10_JV_L_25M_ZT8-30377433
technical_replicate3
sequencing_replicate2


title: Liver_25M_166

description:
P3_D2_JV_L_25M_ZT52-30384462
technical_replicate3
sequencing_replicate2


title: Liver_25M_141

description:
P3_C10_JV_L_25M_ZT8-30330408
technical_replicate3
sequencing_replicate1


title: Liver_25M_140

description:
P3_B9_JV_L_25M_ZT28-30373442
technical_replicate3
sequencing_replicate2


title: Liver_25M_139

description:
P3_B9_JV_L_25M_ZT28-30344424
technical_replicate3
sequencing_replicate1


title: Liver_25M_137

description:
P3_B8_JV_L_25M_ZT18-30345414
technical_replicate3
sequencing_replicate1


title: Liver_25M_138

description:
P3_B8_JV_L_25M_ZT18-30376434
technical_replicate3
sequencing_replicate2


title: Liver_25M_135

description:
P3_B7_JV_L_25M_ZT30-30343414
technical_replicate3
sequencing_replicate1


title: Liver_25M_130

description:
P3_B4_JV_L_25M_ZT50-30387448
technical_replicate3
sequencing_replicate2


title: Liver_25M_134

description:
P3_B6_JV_L_25M_ZT0-30393454
technical_replicate3
sequencing_replicate2


title: Liver_25M_128

description:
P3_B3_JV_L_25M_ZT34-30384461
technical_replicate3
sequencing_replicate2


title: Liver_25M_126

description:
P3_B2_JV_L_25M_ZT44-30378425
technical_replicate3
sequencing_replicate2


title: Liver_25M_162

description:
P3_D10_JV_L_25M_ZT2-30392441
technical_replicate3
sequencing_replicate2


title: Liver_25M_165

description:
P3_D2_JV_L_25M_ZT52-30331406
technical_replicate3
sequencing_replicate1


title: Liver_25M_124

description:
P3_B11_JV_L_25M_ZT36-30386439
technical_replicate3
sequencing_replicate2


title: Liver_25M_122

description:
P3_B10_JV_L_25M_ZT14-30395450
technical_replicate3
sequencing_replicate2


title: Liver_25M_123

description:
P3_B11_JV_L_25M_ZT36-30345415
technical_replicate3
sequencing_replicate1


title: Liver_25M_119

description:
P2_D9_JV_L_25M_ZT48-30357426
technical_replicate2
sequencing_replicate1


title: Liver_25M_160

description:
P3_C9_JV_L_25M_ZT26-30380448
technical_replicate3
sequencing_replicate2


title: Liver_25M_117

description:
P2_D8_JV_L_25M_ZT6-30355428
technical_replicate2
sequencing_replicate1


title: Liver_25M_156

description:
P3_C7_JV_L_25M_ZT10-30389439
technical_replicate3
sequencing_replicate2


title: Liver_25M_113

description:
P2_D6_JV_L_25M_ZT42-30336411
technical_replicate2
sequencing_replicate1


title: Liver_25M_112

description:
P2_D5_JV_L_25M_ZT18-30387447
technical_replicate2
sequencing_replicate2


title: Liver_25M_155

description:
P3_C7_JV_L_25M_ZT10-30335407
technical_replicate3
sequencing_replicate1


title: Liver_25M_154

description:
P3_C6_JV_L_25M_ZT6-30381432
technical_replicate3
sequencing_replicate2


title: Liver_25M_108

description:
P2_D3_JV_L_25M_ZT8-30377429
technical_replicate2
sequencing_replicate2


title: Liver_25M_152

description:
P3_C5_JV_L_25M_ZT24-30377432
technical_replicate3
sequencing_replicate2


title: Liver_25M_149

description:
P3_C4_JV_L_25M_ZT54-30351430
technical_replicate3
sequencing_replicate1


title: Liver_25M_105

description:
P2_D2_JV_L_25M_ZT10-30338426
technical_replicate2
sequencing_replicate1


title: Liver_25M_104

description:
P2_D11_JV_L_25M_ZT38-30374425
technical_replicate2
sequencing_replicate2


title: Liver_25M_164

description:
P3_D11_JV_L_25M_ZT58-30379430
technical_replicate3
sequencing_replicate2


title: Liver_25M_145

description:
P3_C2_JV_L_25M_ZT12-30341400
technical_replicate3
sequencing_replicate1


title: Liver_25M_102

description:
P2_D10_JV_L_25M_ZT22-30377430
technical_replicate2
sequencing_replicate2


title: Liver_25M_100

description:
P2_C9_JV_L_25M_ZT44-30377428
technical_replicate2
sequencing_replicate2


title: Liver_25M_101

description:
P2_D10_JV_L_25M_ZT22-30354403
technical_replicate2
sequencing_replicate1


title: Liver_25M_99

description:
P2_C9_JV_L_25M_ZT44-30356409
technical_replicate2
sequencing_replicate1


title: Liver_25M_151

description:
P3_C5_JV_L_25M_ZT24-30339415
technical_replicate3
sequencing_replicate1


title: Liver_25M_97

description:
P2_C8_JV_L_25M_ZT0-30336410
technical_replicate2
sequencing_replicate1


title: Liver_25M_136

description:
P3_B7_JV_L_25M_ZT30-30392439
technical_replicate3
sequencing_replicate2


title: Liver_25M_96

description:
P2_C7_JV_L_25M_ZT56-30382431
technical_replicate2
sequencing_replicate2


title: Liver_25M_132

description:
P3_B5_JV_L_25M_ZT48-30391460
technical_replicate3
sequencing_replicate2


title: Liver_25M_133

description:
P3_B6_JV_L_25M_ZT0-30349422
technical_replicate3
sequencing_replicate1


title: Liver_25M_131

description:
P3_B5_JV_L_25M_ZT48-30335406
technical_replicate3
sequencing_replicate1


title: Liver_25M_125

description:
P3_B2_JV_L_25M_ZT44-30355430
technical_replicate3
sequencing_replicate1


title: Liver_25M_127

description:
P3_B3_JV_L_25M_ZT34-30338428
technical_replicate3
sequencing_replicate1


title: Liver_25M_121

description:
P3_B10_JV_L_25M_ZT14-30341399
technical_replicate3
sequencing_replicate1


title: Liver_25M_86

description:
P2_C2_JV_L_25M_ZT16-30386437
technical_replicate2
sequencing_replicate2


title: Liver_25M_89

description:
P2_C4_JV_L_25M_ZT34-30344423
technical_replicate2
sequencing_replicate1


title: Liver_25M_120

description:
P2_D9_JV_L_25M_ZT48-30373440
technical_replicate2
sequencing_replicate2


title: Liver_25M_118

description:
P2_D8_JV_L_25M_ZT6-30385428
technical_replicate2
sequencing_replicate2


title: Liver_25M_129

description:
P3_B4_JV_L_25M_ZT50-30338429
technical_replicate3
sequencing_replicate1


title: Liver_25M_116

description:
P2_D7_JV_L_25M_ZT52-30374424
technical_replicate2
sequencing_replicate2


title: Liver_25M_114

description:
P2_D6_JV_L_25M_ZT42-30386438
technical_replicate2
sequencing_replicate2


title: Liver_25M_78

description:
P2_B8_JV_L_25M_ZT50-30386436
technical_replicate2
sequencing_replicate2


title: Liver_25M_79

description:
P2_B9_JV_L_25M_ZT12-30352413
technical_replicate2
sequencing_replicate1


title: Liver_25M_110

description:
P2_D4_JV_L_25M_ZT28-30379427
technical_replicate2
sequencing_replicate2


title: Liver_25M_81

description:
P2_C10_JV_L_25M_ZT58-30353421
technical_replicate2
sequencing_replicate1


title: Liver_25M_109

description:
P2_D4_JV_L_25M_ZT28-30354402
technical_replicate2
sequencing_replicate1


title: Liver_25M_107

description:
P2_D3_JV_L_25M_ZT8-30340400
technical_replicate2
sequencing_replicate1


title: Liver_25M_115

description:
P2_D7_JV_L_25M_ZT52-30337400
technical_replicate2
sequencing_replicate1


title: Liver_25M_106

description:
P2_D2_JV_L_25M_ZT10-30373439
technical_replicate2
sequencing_replicate2


title: Liver_25M_111

description:
P2_D5_JV_L_25M_ZT18-30338427
technical_replicate2
sequencing_replicate1


title: Liver_25M_69

description:
P2_B4_JV_L_25M_ZT14-30338424
technical_replicate2
sequencing_replicate1


title: Liver_25M_76

description:
P2_B7_JV_L_25M_ZT26-30380447
technical_replicate2
sequencing_replicate2


title: Liver_25M_75

description:
P2_B7_JV_L_25M_ZT26-30344422
technical_replicate2
sequencing_replicate1


title: Liver_25M_103

description:
P2_D11_JV_L_25M_ZT38-30355429
technical_replicate2
sequencing_replicate1


title: Liver_25M_65

description:
P2_B2_JV_L_25M_ZT32-30330406
technical_replicate2
sequencing_replicate1


title: Liver_25M_64

description:
P2_B11_JV_L_25M_ZT46-30391457
technical_replicate2
sequencing_replicate2


title: Liver_25M_95

description:
P2_C7_JV_L_25M_ZT56-30338425
technical_replicate2
sequencing_replicate1


title: Liver_25M_63

description:
P2_B11_JV_L_25M_ZT46-30336409
technical_replicate2
sequencing_replicate1


title: Liver_25M_73

description:
P2_B6_JV_L_25M_ZT40-30339413
technical_replicate2
sequencing_replicate1


title: Liver_25M_94

description:
P2_C6_JV_L_25M_ZT24-30374423
technical_replicate2
sequencing_replicate2


title: Liver_25M_93

description:
P2_C6_JV_L_25M_ZT24-30339414
technical_replicate2
sequencing_replicate1


title: Liver_25M_62

description:
P2_B10_JV_L_25M_ZT2-30376433
technical_replicate2
sequencing_replicate2


title: Liver_25M_92

description:
P2_C5_JV_L_25M_ZT36-30371447
technical_replicate2
sequencing_replicate2


title: Liver_25M_98

description:
P2_C8_JV_L_25M_ZT0-30373438
technical_replicate2
sequencing_replicate2


title: Liver_25M_91

description:
P2_C5_JV_L_25M_ZT36-30351429
technical_replicate2
sequencing_replicate1


title: Liver_25M_90

description:
P2_C4_JV_L_25M_ZT34-30373437
technical_replicate2
sequencing_replicate2


title: Liver_25M_88

description:
P2_C3_JV_L_25M_ZT20-30384460
technical_replicate2
sequencing_replicate2


title: Liver_25M_87

description:
P2_C3_JV_L_25M_ZT20-30350413
technical_replicate2
sequencing_replicate1


title: Liver_25M_85

description:
P2_C2_JV_L_25M_ZT16-30341398
technical_replicate2
sequencing_replicate1


title: Liver_25M_55

description:
P1_D7_JV_L_25M_ZT22-30351427
technical_replicate1
sequencing_replicate1


title: Liver_25M_83

description:
P2_C11_JV_L_25M_ZT4-30337399
technical_replicate2
sequencing_replicate1


title: Liver_25M_84

description:
P2_C11_JV_L_25M_ZT4-30387446
technical_replicate2
sequencing_replicate2


title: Liver_25M_53

description:
P1_D6_JV_L_25M_ZT18-30330402
technical_replicate1
sequencing_replicate1


title: Liver_25M_52

description:
P1_D5_JV_L_25M_ZT26-30375443
technical_replicate1
sequencing_replicate2


title: Liver_25M_82

description:
P2_C10_JV_L_25M_ZT58-30379426
technical_replicate2
sequencing_replicate2


title: Liver_25M_80

description:
P2_B9_JV_L_25M_ZT12-30384459
technical_replicate2
sequencing_replicate2


title: Liver_25M_74

description:
P2_B6_JV_L_25M_ZT40-30376432
technical_replicate2
sequencing_replicate2


title: Liver_25M_48

description:
P1_D3_JV_L_25M_ZT8-30392437
technical_replicate1
sequencing_replicate2


title: Liver_25M_72

description:
P2_B5_JV_L_25M_ZT54-30374422
technical_replicate2
sequencing_replicate2


title: Liver_25M_77

description:
P2_B8_JV_L_25M_ZT50-30353419
technical_replicate2
sequencing_replicate1


title: Liver_25M_47

description:
P1_D3_JV_L_25M_ZT8-30351426
technical_replicate1
sequencing_replicate1


title: Liver_25M_46

description:
P1_D2_JV_L_25M_ZT42-30377427
technical_replicate1
sequencing_replicate2


title: Liver_25M_43

description:
P1_D11_JV_L_25M_ZT56-30338423
technical_replicate1
sequencing_replicate1


title: Liver_25M_45

description:
P1_D2_JV_L_25M_ZT42-30337397
technical_replicate1
sequencing_replicate1


title: Liver_25M_41

description:
P1_D10_JV_L_25M_ZT30-30338422
technical_replicate1
sequencing_replicate1


title: Liver_25M_70

description:
P2_B4_JV_L_25M_ZT14-30393453
technical_replicate2
sequencing_replicate2


title: Liver_25M_71

description:
P2_B5_JV_L_25M_ZT54-30351428
technical_replicate2
sequencing_replicate1


title: Liver_25M_68

description:
P2_B3_JV_L_25M_ZT30-30385427
technical_replicate2
sequencing_replicate2


title: Liver_25M_67

description:
P2_B3_JV_L_25M_ZT30-30349420
technical_replicate2
sequencing_replicate1


title: Liver_25M_66

description:
P2_B2_JV_L_25M_ZT32-30376431
technical_replicate2
sequencing_replicate2


title: Liver_25M_36

description:
P1_C7_JV_L_25M_ZT34-30380446
technical_replicate1
sequencing_replicate2


title: Liver_25M_34

description:
P1_C6_JV_L_25M_ZT38-30384455
technical_replicate1
sequencing_replicate2


title: Liver_25M_61

description:
P2_B10_JV_L_25M_ZT2-30353420
technical_replicate2
sequencing_replicate1


title: Liver_25M_59

description:
P1_D9_JV_L_25M_ZT36-30357425
technical_replicate1
sequencing_replicate1


title: Liver_25M_57

description:
P1_D8_JV_L_25M_ZT40-30353418
technical_replicate1
sequencing_replicate1


title: Liver_25M_58

description:
P1_D8_JV_L_25M_ZT40-30391456
technical_replicate1
sequencing_replicate2


title: Liver_25M_60

description:
P1_D9_JV_L_25M_ZT36-30394461
technical_replicate1
sequencing_replicate2


title: Liver_25M_56

description:
P1_D7_JV_L_25M_ZT22-30379425
technical_replicate1
sequencing_replicate2


title: Liver_25M_35

description:
P1_C7_JV_L_25M_ZT34-30353417
technical_replicate1
sequencing_replicate1


title: Liver_25M_54

description:
P1_D6_JV_L_25M_ZT18-30371445
technical_replicate1
sequencing_replicate2


title: Liver_25M_51

description:
P1_D5_JV_L_25M_ZT26-30345413
technical_replicate1
sequencing_replicate1


title: Liver_25M_50

description:
P1_D4_JV_L_25M_ZT4-30376430
technical_replicate1
sequencing_replicate2


title: Liver_25M_49

description:
P1_D4_JV_L_25M_ZT4-30337398
technical_replicate1
sequencing_replicate1


title: Liver_25M_26

description:
P1_C2_JV_L_25M_ZT44-30385423
technical_replicate1
sequencing_replicate2


title: Liver_25M_24

description:
P1_C11_JV_L_25M_ZT6-30378424
technical_replicate1
sequencing_replicate2


title: Liver_25M_44

description:
P1_D11_JV_L_25M_ZT56-30387445
technical_replicate1
sequencing_replicate2


title: Liver_25M_42

description:
P1_D10_JV_L_25M_ZT30-30384457
technical_replicate1
sequencing_replicate2


title: Liver_25M_39

description:
P1_C9_JV_L_25M_ZT24-30338421
technical_replicate1
sequencing_replicate1


title: Liver_25M_40

description:
P1_C9_JV_L_25M_ZT24-30384456
technical_replicate1
sequencing_replicate2


title: Liver_25M_38

description:
P1_C8_JV_L_25M_ZT46-30385424
technical_replicate1
sequencing_replicate2


title: Liver_25M_32

description:
P1_C5_JV_L_25M_ZT48-30394460
technical_replicate1
sequencing_replicate2


title: Liver_25M_33

description:
P1_C6_JV_L_25M_ZT38-30331405
technical_replicate1
sequencing_replicate1


title: Liver_25M_19

description:
P1_B9_JV_L_25M_ZT10-30352410
technical_replicate1
sequencing_replicate1


title: Liver_25M_18

description:
P1_B8_JV_L_25M_ZT54-30373436
technical_replicate1
sequencing_replicate2


title: Liver_25M_29

description:
P1_C4_JV_L_25M_ZT2-30335402
technical_replicate1
sequencing_replicate1


title: Liver_25M_31

description:
P1_C5_JV_L_25M_ZT48-30357424
technical_replicate1
sequencing_replicate1


title: Arabidopsis ein3eil1 root rep 2

city: Shenzhen

first: Bosheng

last: Li

state: Guangdong

address: SUStech Huiyuan #1 406

department: MCDB

country: China

institute: SUSTC (current, may different with previous institution )

library_source: transcriptomic

data_processing:
BWA, v0.7.7, default parameter
degeR, v3.20.1, default parameter
Genome_build: TAIR10
Supplementary_files_format_and_content: Gene, Reads per Gene(Total:40890624),Length, Coverage, Rpkm

molecule: polyA RNA

organism: Arabidopsis thaliana

source_name: root

growth_protocol: Col-0, ein3 eil1, rhd6 rsl1 and ein3 eil1 rhd6 rsl1 were grown vertically on MS medium for 6 d and then treated with or without ET at 10 ppm for 4 h.

extract_protocol:
RNAeasy Kit
stander Illumina mRNA-seq protocol

tag: genotype/variation

tag: treatment


title: Liver_25M_30

description:
P1_C4_JV_L_25M_ZT2-30392436
technical_replicate1
sequencing_replicate2


title: Liver_25M_20

description:
P1_B9_JV_L_25M_ZT10-30395447
technical_replicate1
sequencing_replicate2


title: Liver_25M_37

description:
P1_C8_JV_L_25M_ZT46-30343413
technical_replicate1
sequencing_replicate1


title: Liver_25M_25

description:
P1_C2_JV_L_25M_ZT44-30343412
technical_replicate1
sequencing_replicate1


title: Arabidopsis Col-0 root rep 2

value: Col


title: Liver_25M_14

description:
P1_B6_JV_L_25M_ZT58-30374420
technical_replicate1
sequencing_replicate2


title: Liver_25M_13

description:
P1_B6_JV_L_25M_ZT58-30340398
technical_replicate1
sequencing_replicate1


title: Liver_25M_28

description:
P1_C3_JV_L_25M_ZT12-30384454
technical_replicate1
sequencing_replicate2


title: Arabidopsis rhd6rsl1 with Ethylene treatment root rep 1

value: ET at 10 ppm for 4 h


title: Liver_25M_23

description:
P1_C11_JV_L_25M_ZT6-30349418
technical_replicate1
sequencing_replicate1


title: Liver_25M_22

description:
P1_C10_JV_L_25M_ZT32-30376429
technical_replicate1
sequencing_replicate2


title: Liver_25M_11

description:
P1_B5_JV_L_25M_ZT50-30349417
technical_replicate1
sequencing_replicate1


title: Liver_25M_21

description:
P1_C10_JV_L_25M_ZT32-30354401
technical_replicate1
sequencing_replicate1


title: Arabidopsis ein3eil1 with Ethylene treatment root rep 1


title: Arabidopsis Col with Ethylene treatment root rep 2


title: Liver_25M_27

description:
P1_C3_JV_L_25M_ZT12-30340399
technical_replicate1
sequencing_replicate1


title: Arabidopsis ein3eil1rhd6rsl1 with ethylene treatment root rep 2


title: Arabidopsis ein3eil1rhd6rsl1 with ethylene treatment root rep 1


title: Arabidopsis Col with Ethylene treatment root rep 1


title: Liver_25M_17

description:
P1_B8_JV_L_25M_ZT54-30354399
technical_replicate1
sequencing_replicate1


title: Arabidopsis ein3eil1 root rep 1


title: Liver_25M_16

description:
P1_B7_JV_L_25M_ZT28-30382430
technical_replicate1
sequencing_replicate2


title: Liver_25M_6

description:
P1_B2_JV_L_25M_ZT14-30391455
technical_replicate1
sequencing_replicate2


title: Arabidopsis rhd6rsl1 root rep 2


title: Arabidopsis Col-0 root rep 1


title: Arabidopsis rhd6rsl1 with Ethylene treatment root rep 2


title: Arabidopsis ein3eil1rhd6rsl1 root rep 1


title: Liver_25M_15

description:
P1_B7_JV_L_25M_ZT28-30350411
technical_replicate1
sequencing_replicate1


title: rdr2_vegetative.cell_BSseq

city: Norwich

first: Xiaoqi

last: Feng

state: Norfolk

address: Norwich Research Park

department: Cell and Developmental Biology

country: United Kingdom

institute: John Innes Centre

data_processing:
Bisulfite-Seq: We used Perl scripts to convert all the Cs in the reads (and in the scaffolds) to Ts, and aligned the converted reads to the converted reference scaffold, allowing up to two mismatches per read. 76 base reads were divided into the first 45 and the last 31 bases, 100 base reads and 150 base reads were divided in half. Each half of the read was aligned independently using bowtie, allowing up to two mismatches. The coordinates of the two halves were subsequently correlated; the second half was discarded if it did not match the first.
Single_C: We used Perl scripts to recover the original sequence of each mapped read and, for each C (on either strand), count the number of times it was sequenced as a C or a T.
50bp_window: We used a Perl script to calculate fractional methylation (#C/(#C+#T)) within a 50 bp sliding window for each sequence context (CG, CHG, CHH).
RNASeq: Tophat-2.0.10 followed by Cufflinks-2.2.1 were used to highlight differentially expressed genes between samples.
Genome_build: TAIR10
Supplementary_files_format_and_content: All files are in GFF format. Files contain fractional methylation data either for individual cytosines (single-c) or in 50 bp windows.

growth_protocol: A. thaliana plants of Col-0 ecotype were grown under 16h light/ 8h dark in a growth chamber.

extract_protocol:
Stage 9 flower buds were collected and gently squeezed between a glass slide and coverslip. The released meiocytes (of meiotic prophase I) were examined carefully under a microscope. Clean meiocytes free from any somatic cell debris were transferred to a new slide using capillary glass pipettes, washed by 1 x PBS buffer 3 times, and frozen in liquid nitrogen. Sperm cells and vegetative cell nuclei were isolated by  Fluorescence-activated cell sorting (FACS)
Single-end bisulfite sequencing libraries for Illumina sequencing were constructed using the Ovation Ultralow Methyl-Seq Library Systems (Nugen, #0336) and EpiTect Fast Bisulfite Conversion (Qiagen, #59802) kits according to the kit protocols, except the incorporation of two rounds of bisulfite conversion.Strand-specific RNA sequencing libraries were prepared using ScriptSeq v2 RNA-Seq (Illumina, #SSV21106) Library Preparation and Ovation RNA-Seq Systems for Model Organisms Arabidopsis (Nugen, #0351) kits

tag: ecotype background

tag: age

value: 5-6 week

tag: tissue/cell type

value: vegetative cell


title: WT_meiocyte_BSseq_Rep1

value: wild type

value: male meiocyte


title: Arabidopsis ein3eil1rhd6rsl1 root rep 2


title: Liver_25M_10

description:
P1_B4_JV_L_25M_ZT16-30392435
technical_replicate1
sequencing_replicate2


title: Liver_15M_180

description:
P3_D9_JV_L_15M_ZT16-29875935
technical_replicate3
sequencing_replicate2


title: Liver_25M_9

description:
P1_B4_JV_L_25M_ZT16-30331404
technical_replicate1
sequencing_replicate1


title: drm1drm2_vegetative.cell_BSseq


title: Arabidopsis ein3eil1 with Ethylene treatment root rep 2


title: drm1drm2_sperm_BSseq

value: sperm


title: Liver_15M_178

description:
P3_D8_JV_L_15M_ZT0-29865934
technical_replicate3
sequencing_replicate2


title: Liver_25M_8

description:
P1_B3_JV_L_25M_ZT20-30375442
technical_replicate1
sequencing_replicate2


title: Liver_25M_12

description:
P1_B5_JV_L_25M_ZT50-30385422
technical_replicate1
sequencing_replicate2


title: Liver_25M_7

description:
P1_B3_JV_L_25M_ZT20-30340397
technical_replicate1
sequencing_replicate1


title: Liver_15M_174

description:
P3_D6_JV_L_15M_ZT26-29873935
technical_replicate3
sequencing_replicate2


title: Liver_25M_5

description:
P1_B2_JV_L_25M_ZT14-30339412
technical_replicate1
sequencing_replicate1


title: Liver_15M_172

description:
P3_D5_JV_L_15M_ZT18-29867932
technical_replicate3
sequencing_replicate2


title: Liver_15M_171

description:
P3_D5_JV_L_15M_ZT18-29857904
technical_replicate3
sequencing_replicate1


title: Liver_15M_169

description:
P3_D4_JV_L_15M_ZT2-29859928
technical_replicate3
sequencing_replicate1


title: Liver_25M_4

description:
P1_B11_JV_L_25M_ZT52-30380445
technical_replicate1
sequencing_replicate2


title: Arabidopsis rhd6rsl1 root rep 1


title: Liver_25M_3

description:
P1_B11_JV_L_25M_ZT52-30352411
technical_replicate1
sequencing_replicate1


title: Liver_15M_162

description:
P3_D10_JV_L_15M_ZT14-29868923
technical_replicate3
sequencing_replicate2


title: Liver_25M_2

description:
P1_B10_JV_L_25M_ZT0-30371444
technical_replicate1
sequencing_replicate2


title: Liver_15M_160

description:
P3_C9_JV_L_15M_ZT58-29865927
technical_replicate3
sequencing_replicate2


title: Liver_25M_1

description:
P1_B10_JV_L_25M_ZT0-30354400
technical_replicate1
sequencing_replicate1


title: Liver_15M_157

description:
P3_C8_JV_L_15M_ZT12-29861909
technical_replicate3
sequencing_replicate1


title: Liver_15M_156

description:
P3_C7_JV_L_15M_ZT48-29872917
technical_replicate3
sequencing_replicate2


title: rdr2_sperm_BSseq


title: Liver_15M_177

description:
P3_D8_JV_L_15M_ZT0-29860912
technical_replicate3
sequencing_replicate1


title: Liver_15M_176

description:
P3_D7_JV_L_15M_ZT40-29876949
technical_replicate3
sequencing_replicate2


title: Liver_15M_173

description:
P3_D6_JV_L_15M_ZT26-29862914
technical_replicate3
sequencing_replicate1


title: Liver_15M_179

description:
P3_D9_JV_L_15M_ZT16-29864929
technical_replicate3
sequencing_replicate1


title: Liver_15M_150

description:
P3_C4_JV_L_15M_ZT20-29864928
technical_replicate3
sequencing_replicate2


title: Liver_15M_175

description:
P3_D7_JV_L_15M_ZT40-29859929
technical_replicate3
sequencing_replicate1


title: Liver_15M_170

description:
P3_D4_JV_L_15M_ZT2-29866918
technical_replicate3
sequencing_replicate2


title: Liver_15M_168

description:
P3_D3_JV_L_15M_ZT6-29879932
technical_replicate3
sequencing_replicate2


title: Liver_15M_165

description:
P3_D2_JV_L_15M_ZT10-29869916
technical_replicate3
sequencing_replicate1


title: Liver_15M_147

description:
P3_C3_JV_L_15M_ZT34-29861908
technical_replicate3
sequencing_replicate1


title: Liver_15M_164

description:
P3_D11_JV_L_15M_ZT8-29872926
technical_replicate3
sequencing_replicate2


title: Liver_15M_146

description:
P3_C2_JV_L_15M_ZT52-29872925
technical_replicate3
sequencing_replicate2


title: Liver_15M_163

description:
P3_D11_JV_L_15M_ZT8-29861903
technical_replicate3
sequencing_replicate1


title: Liver_15M_144

description:
P3_C11_JV_L_15M_ZT30-29870933
technical_replicate3
sequencing_replicate2


title: Liver_15M_143

description:
P3_C11_JV_L_15M_ZT30-29865928
technical_replicate3
sequencing_replicate1


title: Liver_15M_159

description:
P3_C9_JV_L_15M_ZT58-29853917
technical_replicate3
sequencing_replicate1


title: Liver_15M_151

description:
P3_C5_JV_L_15M_ZT44-29868935
technical_replicate3
sequencing_replicate1


title: Liver_15M_158

description:
P3_C8_JV_L_15M_ZT12-29873923
technical_replicate3
sequencing_replicate2


title: Liver_15M_155

description:
P3_C7_JV_L_15M_ZT48-29871947
technical_replicate3
sequencing_replicate1


title: Liver_15M_138

description:
P3_B8_JV_L_15M_ZT50-29869915
technical_replicate3
sequencing_replicate2


title: Liver_15M_153

description:
P3_C6_JV_L_15M_ZT22-29857903
technical_replicate3
sequencing_replicate1


title: Liver_15M_167

description:
P3_D3_JV_L_15M_ZT6-29875947
technical_replicate3
sequencing_replicate1


title: Liver_15M_152

description:
P3_C5_JV_L_15M_ZT44-29873922
technical_replicate3
sequencing_replicate2


title: Liver_15M_154

description:
P3_C6_JV_L_15M_ZT22-29877961
technical_replicate3
sequencing_replicate2


title: Liver_15M_137

description:
P3_B8_JV_L_15M_ZT50-29866927
technical_replicate3
sequencing_replicate1


title: Liver_15M_135

description:
P3_B7_JV_L_15M_ZT28-29857902
technical_replicate3
sequencing_replicate1


title: Liver_15M_149

description:
P3_C4_JV_L_15M_ZT20-29862913
technical_replicate3
sequencing_replicate1


title: Liver_15M_134

description:
P3_B6_JV_L_15M_ZT36-29873921
technical_replicate3
sequencing_replicate2


title: Liver_15M_148

description:
P3_C3_JV_L_15M_ZT34-29871936
technical_replicate3
sequencing_replicate2


title: Liver_15M_161

description:
P3_D10_JV_L_15M_ZT14-29862923
technical_replicate3
sequencing_replicate1


title: Liver_15M_130

description:
P3_B4_JV_L_15M_ZT32-29871935
technical_replicate3
sequencing_replicate2


title: Liver_15M_145

description:
P3_C2_JV_L_15M_ZT52-29870925
technical_replicate3
sequencing_replicate1


title: Liver_15M_133

description:
P3_B6_JV_L_15M_ZT36-29864927
technical_replicate3
sequencing_replicate1


title: Liver_15M_129

description:
P3_B4_JV_L_15M_ZT32-29859926
technical_replicate3
sequencing_replicate1


title: Liver_15M_166

description:
P3_D2_JV_L_15M_ZT10-29873934
technical_replicate3
sequencing_replicate2


title: Liver_15M_128

description:
P3_B3_JV_L_15M_ZT54-29872916
technical_replicate3
sequencing_replicate2


title: Liver_15M_142

description:
P3_C10_JV_L_15M_ZT46-29868922
technical_replicate3
sequencing_replicate2


title: Liver_15M_127

description:
P3_B3_JV_L_15M_ZT54-29853916
technical_replicate3
sequencing_replicate1


title: Liver_15M_126

description:
P3_B2_JV_L_15M_ZT24-29866917
technical_replicate3
sequencing_replicate2


title: Liver_15M_139

description:
P3_B9_JV_L_15M_ZT4-29852901
technical_replicate3
sequencing_replicate1


title: Liver_15M_141

description:
P3_C10_JV_L_15M_ZT46-29859927
technical_replicate3
sequencing_replicate1


title: Liver_15M_132

description:
P3_B5_JV_L_15M_ZT56-29877951
technical_replicate3
sequencing_replicate2


title: Liver_15M_121

description:
P3_B10_JV_L_15M_ZT38-29867926
technical_replicate3
sequencing_replicate1


title: Liver_15M_140

description:
P3_B9_JV_L_15M_ZT4-29863940
technical_replicate3
sequencing_replicate2


title: Liver_15M_124

description:
P3_B11_JV_L_15M_ZT42-29876948
technical_replicate3
sequencing_replicate2


title: Liver_15M_123

description:
P3_B11_JV_L_15M_ZT42-29875946
technical_replicate3
sequencing_replicate1


title: Liver_15M_116

description:
P2_D7_JV_L_15M_ZT52-29879936
technical_replicate2
sequencing_replicate2


title: Liver_15M_115

description:
P2_D7_JV_L_15M_ZT52-29859920
technical_replicate2
sequencing_replicate1


title: Liver_15M_136

description:
P3_B7_JV_L_15M_ZT28-29875945
technical_replicate3
sequencing_replicate2


title: Liver_15M_122

description:
P3_B10_JV_L_15M_ZT38-29870932
technical_replicate3
sequencing_replicate2


title: Liver_15M_114

description:
P2_D6_JV_L_15M_ZT30-29877959
technical_replicate2
sequencing_replicate2


title: Liver_15M_112

description:
P2_D5_JV_L_15M_ZT40-29858922
technical_replicate2
sequencing_replicate2


title: Liver_15M_119

description:
P2_D9_JV_L_15M_ZT38-29867925
technical_replicate2
sequencing_replicate1


title: Liver_15M_108

description:
P2_D3_JV_L_15M_ZT58-29871934
technical_replicate2
sequencing_replicate2


title: Liver_15M_110

description:
P2_D4_JV_L_15M_ZT34-29877950
technical_replicate2
sequencing_replicate2


title: Liver_15M_107

description:
P2_D3_JV_L_15M_ZT58-29863939
technical_replicate2
sequencing_replicate1


title: Liver_15M_117

description:
P2_D8_JV_L_15M_ZT24-29857901
technical_replicate2
sequencing_replicate1


title: Liver_15M_125

description:
P3_B2_JV_L_15M_ZT24-29865933
technical_replicate3
sequencing_replicate1


title: Liver_15M_120

description:
P2_D9_JV_L_15M_ZT38-29876957
technical_replicate2
sequencing_replicate2


title: Liver_15M_113

description:
P2_D6_JV_L_15M_ZT30-29863932
technical_replicate2
sequencing_replicate1


title: Liver_15M_102

description:
P2_D10_JV_L_15M_ZT2-29877960
technical_replicate2
sequencing_replicate2


title: Liver_15M_100

description:
P2_C9_JV_L_15M_ZT36-29864925
technical_replicate2
sequencing_replicate2


title: Liver_15M_111

description:
P2_D5_JV_L_15M_ZT40-29857910
technical_replicate2
sequencing_replicate1


title: Liver_15M_105

description:
P2_D2_JV_L_15M_ZT0-29864917
technical_replicate2
sequencing_replicate1


title: Liver_15M_106

description:
P2_D2_JV_L_15M_ZT0-29877958
technical_replicate2
sequencing_replicate2


title: Liver_15M_109

description:
P2_D4_JV_L_15M_ZT34-29864926
technical_replicate2
sequencing_replicate1


title: Liver_15M_104

description:
P2_D11_JV_L_15M_ZT14-29871946
technical_replicate2
sequencing_replicate2


title: Liver_15M_99

description:
P2_C9_JV_L_15M_ZT36-29853909
technical_replicate2
sequencing_replicate1


title: Liver_15M_97

description:
P2_C8_JV_L_15M_ZT4-29856917
technical_replicate2
sequencing_replicate1


title: Liver_15M_95

description:
P2_C7_JV_L_15M_ZT22-29874944
technical_replicate2
sequencing_replicate1


title: Liver_15M_101

description:
P2_D10_JV_L_15M_ZT2-29853910
technical_replicate2
sequencing_replicate1


title: Liver_15M_118

description:
P2_D8_JV_L_15M_ZT24-29869925
technical_replicate2
sequencing_replicate2


title: Liver_15M_93

description:
P2_C6_JV_L_15M_ZT28-29859919
technical_replicate2
sequencing_replicate1


title: Liver_15M_89

description:
P2_C4_JV_L_15M_ZT16-29858921
technical_replicate2
sequencing_replicate1


title: Liver_15M_92

description:
P2_C5_JV_L_15M_ZT50-29876947
technical_replicate2
sequencing_replicate2


title: Liver_15M_88

description:
P2_C3_JV_L_15M_ZT18-29874943
technical_replicate2
sequencing_replicate2


title: Liver_15M_91

description:
P2_C5_JV_L_15M_ZT50-29869924
technical_replicate2
sequencing_replicate1


title: Liver_15M_96

description:
P2_C7_JV_L_15M_ZT22-29875934
technical_replicate2
sequencing_replicate2


title: Liver_15M_85

description:
P2_C2_JV_L_15M_ZT46-29856926
technical_replicate2
sequencing_replicate1


title: Liver_15M_103

description:
P2_D11_JV_L_15M_ZT14-29862912
technical_replicate2
sequencing_replicate1


title: Liver_15M_84

description:
P2_C11_JV_L_15M_ZT42-29868934
technical_replicate2
sequencing_replicate2


title: Liver_15M_81

description:
P2_C10_JV_L_15M_ZT8-29853915
technical_replicate2
sequencing_replicate1


title: Liver_15M_86

description:
P2_C2_JV_L_15M_ZT46-29877949
technical_replicate2
sequencing_replicate2


title: Liver_15M_79

description:
P2_B9_JV_L_15M_ZT54-29872924
technical_replicate2
sequencing_replicate1


title: Liver_15M_83

description:
P2_C11_JV_L_15M_ZT42-29865926
technical_replicate2
sequencing_replicate1


title: Liver_15M_131

description:
P3_B5_JV_L_15M_ZT56-29870931
technical_replicate3
sequencing_replicate1


title: Liver_15M_80

description:
P2_B9_JV_L_15M_ZT54-29874937
technical_replicate2
sequencing_replicate2


title: Liver_15M_78

description:
P2_B8_JV_L_15M_ZT6-29879931
technical_replicate2
sequencing_replicate2


title: Liver_15M_98

description:
P2_C8_JV_L_15M_ZT4-29863938
technical_replicate2
sequencing_replicate2


title: RICK-seq-Experiment_2

city: Guangzhou

first: Xiangpeng

last: Guo

address: 190 Kaiyuan Avenue, Science Park, Guangzhou , China

institute: GUANGZHOU INSTITUTES OF BIOMEDICINE AND HEALTH,CHINESE ACADEMY OF SCIENCES

data_processing:
Illumia bcl2fastq2.17 software was used for basecalling.
Data were aligned to the hg19 human genome assembly using Bowtie2 (v2.2.5) with default settings.
Distribution of aligned reads was calculated according to GENCODE v19 with in-house scripts.
Genome_build: hg19
Supplementary_files_format_and_content: Nomalized Bigwig files were generated using bamCoverage script from deepTools.

molecule: total RNA

organism: Homo sapiens

source_name: RICK was performed under the HeLa cells treated with EU for 16 hour, replicate 2

growth_protocol: HeLa cells were cultured in DMEM/HIGH GLUCOSE (Hyclone) supplemented with 10% FBS (Biowest), nonessential amino acids (Hyclone), penicillin/streptomycin (Invitrogen), and GlutaMax (Invitrogen)

extract_protocol:
Samples were treated with proteinase K (Merck), and RNA was isolated using phenol/chloroform extraction.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: For each typical RICK experiment, 3 plates (10 cm, Corning) of HeLa cells were grown upto 80% confluence and then supplemented with EU at a final concentration of 0.25 mM for 16 hours. After washing 3 times with PBS, the plates were placed on ice and irradiated with 0.15 J/cm2 UV light at 254 nm. Cells were then fixed with 90% ethanol for 15 mins, washed with PBS 3 times, and permeated with 0.5% Triton X-100 (in PBS) for 15 mins. Followed by 3 washes with PBS, permeated cells were incubated with 10 ml of click reaction buffer (PBS containing 0.2 mM CuSO4, 1 mM THPTA (Tris(3-hydroxypropyltriazolylmethyl)amine), 250 μM biotin-azide, 1 mM aminoguanindin, and 2.5 mM sodium L-ascorbate) for 3 mins. Reaction buffer was removed and cells were washed with 0.5% Triton X-100 (in PBS) supplemented with 2 mM EDTA for 3 times. The cells were then lysed in lysis buffer (100 mM Tris-HCl, pH 7.5, 500 mM LiCl, 10 mM EDTA pH 8.0, 1% lithium-dodecylsulfate, 5 mM DTT, and protease inhibitor cocktail (Roche)) and harvested by scraping. Lysates were homogenized using a syringe with a 0.4 mm diameter-needle. Complexes containing different RNA species and their associated proteins were isolated with streptavidin-conjugated magnetic beads (100μl beads for each plate, Dynabeads® MyOne™ Streptavidin C1, Thermo Fisher Scientific). After incubating with the lysates for 2 hours with continuous rotation, the beads were isolated on a magnetic stand and washed using lysis buffer (100 mM Tris-HCl, pH 7.5, 500 mM LiCl, 10 mM EDTA pH 8.0, 1% lithium dodecyl sulfate (LiDS), 5 mM DTT, and protease inhibitor cocktail (Roche)), buffer 1 (50 mM Tris-HCl, pH 7.5, 140 mM LiCl, 2 mM EDTA pH 8.0, 0.5% NP40, and 0.5 mM DTT), buffer 2 (50 mM Tris-HCl pH 7.5, 500 mM LiCl, 2 mM EDTA pH 8.0, 0.5% NP40, and 0.5 mM DTT), and buffer 3 (50 mM Tris-HCl pH 7.5, 800 mM LiCl, 2 mM EDTA pH 8.0, 0.5% NP40, and 0.5 mM DTT), for 2 times each under rotation, for 10 mins at 4 °C. For short-labeling (0.5, 1, 2 hours) RICK in HeLa, we used EU at a final concentration of 2 mM; the rest of the procedure was similar to 16-hour RICK.

tag: cell type

value: Derived from cervical cancer cells

tag: cell line

value: HeLa


title: RICK-seq-Input_2

source_name: Input, replicate 2


title: Liver_15M_76

description:
P2_B7_JV_L_15M_ZT56-29873933
technical_replicate2
sequencing_replicate2


title: RICK-seq-Input

source_name: Input, replicate 1


title: Liver_15M_90

description:
P2_C4_JV_L_15M_ZT16-29861907
technical_replicate2
sequencing_replicate2


title: Liver_15M_94

description:
P2_C6_JV_L_15M_ZT28-29868933
technical_replicate2
sequencing_replicate2


title: RICK-seq-2hours

source_name: RICK was performed under the HeLa cells treated with EU for 2 hour


title: Liver_15M_87

description:
P2_C3_JV_L_15M_ZT18-29859918
technical_replicate2
sequencing_replicate1


title: Liver_15M_72

description:
P2_B5_JV_L_15M_ZT20-29872923
technical_replicate2
sequencing_replicate2


title: RICK-seq-1hours

source_name: RICK was performed under the HeLa cells treated with EU for 1 hour


title: T1D-3

city: Huntsville

first: Nripesh

last: Prasad

state: Alabama

address: 601 Genome way

country: USA

institute: Hudson Alpha Institute for Biotechnology

data_processing:
Post-processing of the sequencing reads from RNA-seq experiments for each sample was performed using HudsonAlpha’s unique in-house RNA-seq data analysis pipeline. Briefly, quality control checks on raw sequence data for each sample were performed using FastQC (Babraham Bioinformatics, Cambridge, UK). Raw reads were mapped to the reference hg19 using TopHat v2.1. Aligned reads were imported to the commercial data analysis platform AvadisNGS (Strand Scientifics, CA, USA). After quality inspection, the aligned reads were filtered reads based on read quality,alignment quality follwed by  removing duplicates. Transcript abundance was quantified using Trimmed Means of M-values (TMM) as the normalization method. Output data utilized for all subsequent comparisons were summarized as normalized signal values generated by AvadisNGS. Differential expression of genes was calculated on the basis of fold changes (using the default cut-off ≥ ±1.5.0) observed in comparisons between defined conditions, and the p-value of the differentially expressed gene list was estimated by z test using Benjamini Hochberg corrections of 0.05 for false-discovery rate. Differentially expressed genes were further analyzed through Ingenuity Pathway Analysis and Gene Ontology (GO) analysis using DAVID v6.8
Genome_build: hg19
Supplementary_files_format_and_content: Excel file with Normalized expression values for each sample

source_name: Human pancreatic islets

extract_protocol:
RNAqueous micro-scale phenol-free total RNA isolation kit
RNA concentration and integrity was evaluated (Qubit Fluormeter; Invitrogen, Carlsbad, CA; Agilent 2100 Bioanayzer), and high-integrity total RNA was amplified (Ovation system; NuGen Technologies, San Carlos, CA) per standard protocol as described previously (Brissova et al., 2014). Amplified cDNA was sheared to target 200bp fragment size and libraries were prepared using NEBNext DNA Library Prep (New England BioLabs, Ipswich, MA). Accurate quantification of libraries for sequencing was determined using the qPCR-based KAPA Biosystems Library Quantification Kit (Kapa Biosystems, Inc., Woburn, MA, USA). 50bp Paired End (PE) sequencing was performed on an Illumina HiSeq 2500(Illumina Inc., San Diego, CA, USA)  to generate approximately 50 million reads per sample

value: FACS-purified alpha cells

value: Human pancreatic islets

value: Donor:23 years old

tag: gender

tag: disease state

value: Type I diabetes


title: Liver_15M_71

description:
P2_B5_JV_L_15M_ZT20-29857900
technical_replicate2
sequencing_replicate1

value: male


title: Liver_15M_73

description:
P2_B6_JV_L_15M_ZT32-29863937
technical_replicate2
sequencing_replicate1

value: bisulfite


title: RICK-seq-0.5hours

source_name: RICK was performed under the HeLa cells treated with EU for 0.5 hour


title: Liver_15M_82

description:
P2_C10_JV_L_15M_ZT8-29872915
technical_replicate2
sequencing_replicate2

value: Liver


title: T1D-2

value: Donor:30 years old


title: Liver_15M_70

description:
P2_B4_JV_L_15M_ZT10-29871932
technical_replicate2
sequencing_replicate2


title: Liver_15M_68

description:
P2_B3_JV_L_15M_ZT12-29876946
technical_replicate2
sequencing_replicate2


title: Liver_15M_77

description:
P2_B8_JV_L_15M_ZT6-29876956
technical_replicate2
sequencing_replicate1


title: Liver_15M_69

description:
P2_B4_JV_L_15M_ZT10-29868932
technical_replicate2
sequencing_replicate1


title: Liver_15M_65

description:
P2_B2_JV_L_15M_ZT48-29864924
technical_replicate2
sequencing_replicate1


title: Liver_15M_67

description:
P2_B3_JV_L_15M_ZT12-29875944
technical_replicate2
sequencing_replicate1


title: T1D-1

value: Donor:14 years old

value: female


title: Liver_15M_66

description:
P2_B2_JV_L_15M_ZT48-29866916
technical_replicate2
sequencing_replicate2


title: Control-5

value: Donor:49 years old

value: non-diabetic control


title: Control-2

value: Donor:55 years old


title: Control-3

value: Donor:26 years old


title: Control-4

value: Donor:50 years old


title: Liver_15M_63

description:
P2_B11_JV_L_15M_ZT44-29853914
technical_replicate2
sequencing_replicate1


title: Liver_15M_64

description:
P2_B11_JV_L_15M_ZT44-29861902
technical_replicate2
sequencing_replicate2


title: Control-1

value: Donor:35 years old


title: shHBO1_REP2

city: Houston

first: Paul

last: Webb

address: 6670 Bertner Ave

department: Genomic Medicine

institute: Houston Methodist Research Institute

description: replicate 2

data_processing:
RNA-seq reads were aligned to the hg19 indexed transcriptome using Bowtie 1.2.1.1 with parameters -p 8 -aS -X 800 --offrate
SAMtools was used to convert SAM files into binary, followed by the use of BAMtools to filter out reads with unmapped mate or multi-mapped.
eXpress was used to quantify expression levels from the transcriptome mapping and derive count data.
DESeq2 was used to correct for multiple hypothesis testing and determine significantly modified transcripts.
Genome_build: hg19
Supplementary_files_format_and_content: Tab-delimited text file includes normalized gene abundance measurements of every sample.

source_name: shHBO1 transduced UWB1.289 cell line

growth_protocol: UWB1.289 cell line was purchased from ATCC and maintained in DMEM/F-12 medium (Gibco™)

extract_protocol:
Total RNA was extracted and prepared using Rneasy (Qiagen) in accordance with the protocol provided with the kit.
RNA libraries were prepared for sequencing using standard Illumina protocols.

treatment_protocol: Cells were plated in 24-well plates and transduced with either shCtrl or shHBO1, supplemented with polybrene (10 μg/mL) , following manufacturer's instructions (GE Dharmacon™). After 96h, infected cells were selected with growing concentrations of puromycin (1-3μg/mL).

tag: lentiviral transduction


title: shHBO1_REP1

description: replicate 1


title: shHBO1_REP3

description: replicate 3


title: Liver_15M_74

description:
P2_B6_JV_L_15M_ZT32-29871933
technical_replicate2
sequencing_replicate2


title: Liver_15M_75

description:
P2_B7_JV_L_15M_ZT56-29864916
technical_replicate2
sequencing_replicate1


title: Liver_15M_62

description:
P2_B10_JV_L_15M_ZT26-29870930
technical_replicate2
sequencing_replicate2


title: Liver_15M_61

description:
P2_B10_JV_L_15M_ZT26-29852900
technical_replicate2
sequencing_replicate1


title: shCTRL_REP3

description: replicate 3

source_name: shCtrl transduced UWB1.289 cell line

value: control


title: shCTRL_REP2

description: replicate 2


title: shCTRL_REP1

description: replicate 1


title: Liver_15M_59

description:
P1_D9_JV_L_15M_ZT22-29856925
technical_replicate1
sequencing_replicate1


title: Liver_15M_58

description:
P1_D8_JV_L_15M_ZT16-29869923
technical_replicate1
sequencing_replicate2


title: Liver_15M_60

description:
P1_D9_JV_L_15M_ZT22-29876945
technical_replicate1
sequencing_replicate2


title: METTL1_PAR-CLIP_rep2

data_processing:
Illumia bcl2fastq2.17 software was used for basecalling.
Adapter sequences and reads shorter than 15 bp were eliminated, identical reads were collapsed using FASTX-Toolkit.
Reads were first aligned to hg19 Repeat Masker sequences (downloaded from UCSC table browser with tRNA sequences removal). Unaligned reads were further aligned to hg19 genome assembly using bowtie version 1.1.2 with the following configuration, -p 8 -v 2 -m 1 -f.
Reads aligned to hg19 genome were used for peak calling using PARalyzer v1.5, requiring a minimum cluster size of 10 nucleotides, a minimum conversion count of 2 T > C conversion and 5 minimum read counts for cluster inclusion.
Peaks were categorized to two groups (with/without peaks annotated as tRNA), and further used for motifs finding by HOMER's findMotifsGenome script with parameters -p 24 -size -100,100 -rna -S 10 -len 4,5,6,7
genome build: hg19
processed data files format and content: Bed files were extracted  according to PARalyzer output. Bed files including the information of chromosome, start, end, peak ID, read count, strand.

source_name: HEK293T cells

growth_protocol: HEK293T cells were cultured in DMEM/HIGH GLUCOSE (Hyclone) supplemented with 10% FBS (Biowest), nonessential amino acids (Hyclone), penicillin/streptomycin (Invitrogen), and GlutaMax (Invitrogen)

extract_protocol:
Samples were treated with proteinase K (Merck), and RNA was isolated using phenol/chloroform extraction.
RNA libraries were prepared for sequencing using standard Illumina protocols
PAR-CLIP sequencing

treatment_protocol: HEK293T cells were transfected with plasmids expressing FLAG-tagged RBP candidates with 1 μg/μl Polyethylenimine (Polyscience). 24 hours after transfection, cells were treated with 0.2 mM 4-thiouridine (4SU) for another 16 hours. Cells were then crosslinked with 0.4 J/cm2 of 365 nm UV light, scraped off with a rubber scraper in 2 ml PBS per plate, and collected by centrifugation at 500 g for 5 mins at 4°C. Crosslinked cell pellets were resuspended in 300 μl (for each plate) NP40 lysis buffer (50 mM HEPES pH 7.5,150 mM KCl, 2 mM EDTA, 1 mM NaF, 0.5% NP40, 0.5 mM DTT, and protease inhibitor cocktail (Roche)) and incubated on ice for 10 mins. Lysates were homogenized by 0.4 mm syringe needle and centrifuged at 13,000 g for 15 mins at 4°C. The supernatant was digested with RNase T1 (Sigma) at a final concentration of 1 U/ml at 22°C for 15 mins and cooled for 5 mins on ice immediately after digestion. Cell lysates were then added to magnetic beads (Sigma) conjugated with FLAG antibodies (10 μl for each plate) and incubated for 2 hours at 4°C. After that, magnetic beads were collected with a magnetic particle collector (Invitrogen). Beads were washed 3 times with 1 ml of washing buffer (50 mM HEPES-KOH pH 7.5, 300 mM KCl, 0.05% NP40, 0.5 mM DTT, and protease inhibitor cocktail (Roche)) at 4°C, and resuspended in washing buffer (10 μl for each plate) with RNase T1 at a final concentration of 10 U/ml for 15 mins at 22°C, followed by immediate cooling for 5 mins on ice. Beads were washed 3 times with 1 ml of high-salt washing buffer (50 mM HEPES-KOH pH 7.5, 500 mM KCl, 0.05% NP40, 0.5 mM DTT, and protease inhibitor cocktail (Roche)) at 4°C. Beads were resuspended in dephosphorylation buffer (10 μl for each plate, 50 mM Tris-HCl, pH 7.9, 100 mM NaCl, 10 mM MgCl2, and 1 mM DTT) supplemented with calf intestinal alkaline phosphatase (CIAP, NEB) at a final concentration of 0.5 U/ml, and the suspension was incubated for 10 mins at 37°C. After incubation, beads were washed twice with 1 ml of phosphatase wash buffer (50 mM Tris-HCl, pH 7.5, 20 mM EGTA, and 0.5% NP40) and twice with 1 ml of T4 polynucleotide kinase (PNK) buffer without DTT (50 mM Tris-HCl pH 7.5, 50 mM NaCl, and 10 mM MgCl2). The RNAs co-immunoprecipitated proteins were treated with 1 U/μl T4 PNK (NEB) for 60 mins at 37°C. After that, the samples were washed, eluted and run with Novex Bis-Tris 4-12% (Invitrogen) precast PAGE gel in MOPS buffer (Invitrogen). RNA-protein complexes were then transferred onto an NC membrane, which was cut according to the size visualized by Fusion Solos System from Vilber Lourmat on a parallel experiment for PAR-CLIP-biotin chemiluminescent nucleic acid detection. The membrane was cut into small slices for RNA extraction.

value: Derived from human embryonic kidney cells


title: RICK-seq-Experiment

data_processing:
Illumia bcl2fastq2.17 software was used for basecalling.
Data were aligned to the hg19 human genome assembly using Bowtie2 (v2.2.5) with default settings.
Distribution of aligned reads was calculated according to GENCODE v19 with in-house scripts.
Genome_build: hg19
Supplementary_files_format_and_content: Bigwig file was generated using Samtools and  bedGraphToBigWig script.

source_name: RICK was performed under the HeLa cells treated with EU for 16 hour, replicate 1

treatment_protocol: For each typical RICK experiment, 3 plates (10 cm, Corning) of HeLa cells were grown upto 80% confluence and then supplemented with EU at a final concentration of 0.25 mM for 16 hours. After washing 3 times with PBS, the plates were placed on ice and irradiated with 0.15 J/cm2 UV light at 254 nm. Cells were then fixed with 90% ethanol for 15 mins, washed with PBS 3 times, and permeated with 0.5% Triton X-100 (in PBS) for 15 mins. Followed by 3 washes with PBS, permeated cells were incubated with 10 ml of click reaction buffer (PBS containing 0.2 mM CuSO4, 1 mM THPTA (Tris(3-hydroxypropyltriazolylmethyl)amine), 250 μM biotin-azide, 1 mM aminoguanindin, and 2.5 mM sodium L-ascorbate) for 3 mins. Reaction buffer was removed and cells were washed with 0.5% Triton X-100 (in PBS) supplemented with 2 mM EDTA for 3 times. The cells were then lysed in lysis buffer (100 mM Tris-HCl, pH 7.5, 500 mM LiCl, 10 mM EDTA pH 8.0, 1% lithium-dodecylsulfate, 5 mM DTT, and protease inhibitor cocktail (Roche)) and harvested by scraping. Lysates were homogenized using a syringe with a 0.4 mm diameter-needle. Complexes containing different RNA species and their associated proteins were isolated with streptavidin-conjugated magnetic beads (100μl beads for each plate, Dynabeads® MyOne™ Streptavidin C1, Thermo Fisher Scientific). After incubating with the lysates for 2 hours with continuous rotation, the beads were isolated on a magnetic stand and washed using lysis buffer (100 mM Tris-HCl, pH 7.5, 500 mM LiCl, 10 mM EDTA pH 8.0, 1% lithium dodecyl sulfate (LiDS), 5 mM DTT, and protease inhibitor cocktail (Roche)), buffer 1 (50 mM Tris-HCl, pH 7.5, 140 mM LiCl, 2 mM EDTA pH 8.0, 0.5% NP40, and 0.5 mM DTT), buffer 2 (50 mM Tris-HCl pH 7.5, 500 mM LiCl, 2 mM EDTA pH 8.0, 0.5% NP40, and 0.5 mM DTT), and buffer 3 (50 mM Tris-HCl pH 7.5, 800 mM LiCl, 2 mM EDTA pH 8.0, 0.5% NP40, and 0.5 mM DTT), for 2 times each under rotation, for 10 mins at 4 °C.

value: HeLa


title: Liver_15M_57

description:
P1_D8_JV_L_15M_ZT16-29862911
technical_replicate1
sequencing_replicate1


title: METTL1_PAR-CLIP_rep1


title: Liver_15M_56

description:
P1_D7_JV_L_15M_ZT54-29877957
technical_replicate1
sequencing_replicate2


title: Liver_15M_55

description:
P1_D7_JV_L_15M_ZT54-29873920
technical_replicate1
sequencing_replicate1


title: CDK1_PAR-CLIP_rep2


title: CDK1_PAR-CLIP_rep1


title: Liver_15M_51

description:
P1_D5_JV_L_15M_ZT8-29860920
technical_replicate1
sequencing_replicate1


title: Liver_15M_53

description:
P1_D6_JV_L_15M_ZT6-29858927
technical_replicate1
sequencing_replicate1


title: Liver_15M_54

description:
P1_D6_JV_L_15M_ZT6-29859917
technical_replicate1
sequencing_replicate2