title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Prim1 knockdown (T0373), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: GGTAGGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mxi1 knockdown (T0376), replicate 1

status: Public on Feb 02 2017

type: SRA

city: Toronto

first: Ulrich

last: Braunschweig

state: Ontario

address: 160 College Street

department: Donnelly Centre

country: Canada

institute: University of Toronto

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TGGACTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab

library_source: transcriptomic

data_processing:
CASAVA 1.8 was used for base calling.
Fastq files contain demultiplexed reads which were assigned to the appropriate treatment by matching to expected forward and reverse barcodes (sequenced in dedicated reads; not supplied).
Forward and reverse event reads were mapped to custom junction libraries representing all expected splice variants (supplied as processed files), using bowtie with settings --best -v 3 -k 1 --trim3 26 --trim5 20. Trimming was done to remove lower-quality, uninformative ends and because forward reads had a missing base call at position 11 due to a power outage. Junction libraries were first constructed from NCBIm37/mm9 gene annotations, and then refined based on the results of de novo mapping of the reads from one full Illumina lane from each cell line using tophat (default settings with -i 40 and providing Ensembl transcript annotations for NCBIm37), after quality trimming (minimum MAPQ of 33) from the 3'-end with the fastx toolkit. Mapped reads were counted per junction.
Alternative splicing analysis: Percent-spliced-in (PSI) values were calculated for each alternative exon, or part thereof in the case of alternative 5'-/3'-splice sites ('event'), from read tallies as follows: PSI was calculated independently from forward and reverse reads as the percentage of reads supporting inclusion divided by the total number of reads for the event. For alternative 5'/3'-ss events that were part of an alternative exon (Foxm1.A2, Mta1.A1, Uspl1.A3), the PSI was instead calculated with reference to the total reads supporting inclusion of that exon in order to assess independent regulation of alternative splice site usage. Only the read direction in which all reads unambiguously supported either inclusion or exclusion of an event was used, and the average if that applied for both. Exploratory analysis revealed that PSI values showed low-level batch effects per 96-well plate which we moderated by subtracting a weighted plate median in which negative controls (siNT and mock treatment) were given 20x more weight than other samples. To derive variances, and because PSI values are not nearly normally distributed but roughly follow a beta distribution, we elected to fit a beta distribution to each pair of replicate treatments, as well as to all negative controls from both replicates, using maximum-likelihood fitting as implemented in the fitdistr() function from the R package MASS {Venables & Ripley, Modern Applied Statistics with S (2002)}. Iterative optimization of shape parameters was initiated with settings x=PSI, shape1=1, shape2=1, method=”L-BFGS-B”, lower=0.01, and upper=mean number of reads supporting each PSI value. A modified Strictly Standardized Mean Difference (SSMD {Zhang, Genomics (2007)}) was then calculated based on the formula: SSMD = (μt – μc)/SQRT(vart + varc) where μt and μc are the means (corresponding to the PSI), and vart and varc the variances of the beta distributions fitted to the treatment replicates and negative controls, respectively. Events for which not all reads from at least one direction were informative (Mff.A2, Tead1.A2) were excluded from further analysis, as were events in individual treatments with less than 20 reads in one or both replicates (~9% of all event x treatment combinations). Additionally, the following events were removed from further splicing analysis: expression only events or constitutive exons, Fgf4, Gapdh, Srpk2, Srrm4; events with consistently low read counts: Atg13.A1, H2afy.A2, Tcf7l1 (N2A only), Dnmt3b (N2A only); or because measured inclusion was biased by differential length of isoforms:, Fgfr1, Sall4.
Expression analysis: Read counts from all splice variants of each gene were used to estimate relative mRNA expression levels, reads per million reads (RPMs). Differential expression analysis based on raw read counts was performed using the generalized linear models workflow from the R package edgeR. Plate, position (edge/interior) and treatment were used as design factors (where all treatments of each type of control were treated as replicates.) Models fitted using estimateDisp() to estimate the common, trended, and tag-wise dispersion for the CGR8 and N2A data separately. Subsequently, differences attributable to treatment, plate, or position contrasts were extracted with glmLRT() and represented as log2-fold changes with associated FDR. Fold-changes for treatments are relative to the siNT and mock-treatment controls.
Genome_build: NCBIm37/mm9
Supplementary_files_format_and_content: Processed files are either tab-delimited  tables (.tab) or FASTA files (.fa). KnockdownAnnotation.tab contains treatment annotations and well/plate positions. ScreenJuncUp.20-77.tab and ScreenJuncDn.20-77.tab contain the custom junction upstream and downstram junction libraries, respectively, and ScreenEvent_junctions.tab contains the information which junctions were used to calculate PSI for each event. PSI.SSMD.CGR8.tab and PSI.SSMD.N2A.tab contain raw PSI of each replicate and final SSMD. Reads_perEvent_CGR8.tab and Reads_perEvent_N2A.tab contain raw read counts on which expression analyis was based, and Expression.CGR8.treatments.tab and Expression.N2A.treatments.tab contain modeled relative abundance and fold-change with associated FDR for each treatment type.

molecule: total RNA

organism: Mus musculus

source_name: Neuroblastoma cells

growth_protocol: CGR8 mouse embryonic stem cells (ESCs) were cultured as described previously on gelatin-coated plates (Gabut et al., Cell (2011), Han  et al., Nature (2013)). Mouse neuroblastoma (N2A) cells were grown in DMEM supplemented with 10% FBS, sodium pyruvate, MEM non-essential amino acids, and penicillin/streptomycin. All cell lines were maintained at 37°C with 5% CO2.

extract_protocol:
Forty-eight hours post-transfection, total RNA were purified from cultured cells using RNeasy Plus 96 Kit (Qiagen), as per the manufacturer’s instructions.
For each sample, a multiplex RT-PCR assay was first applied to simultaneously amplify 50 AS and/or expression events in a single reaction. The multiplex RT-PCR reaction was carried out in 96-well plates using the OneStep RT-PCR kit (Qiagen) as recommended by the manufacturer, with the following changes: reactions were performed in a volume of 20 uL with 2 uL of the purified total RNA as input, and a mixture of 50 pairs of primers was added to each reaction with a final concentration of 0.25 uM for each individual forward and reverse primer. Four identical Veriti 96-well Thermal Cyclers (Applied Biosystems) were used with the following conditions: 50°C for 30 minutes, 95°C for 15 minute, 30 cycles of 94°C for 40 seconds, 58°C for 1 minute (slow ramp rate), 72°C for 3 minutes, and a final extension step at 72°C for 10 minutes. Two sets of barcodes were incorporated into forward and reverse primers, respectively, after the universal adaptors and added to the amplicons in the second PCR reaction to allow demultiplexing all reads that were derived from a particular treatment. Primers sequences were: forward primer, AATGATACGGCGACCACCGAGATCTACACNNNNNNNNACACTCTTTCCCTACACGACGCTCTTCCGATCT (N denotes i5 barcode); reverse primer, CAAGCAGAAGACGGCATACGAGATNNNNNNNNGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT (N denotes i7 primer). The second PCR was performed using Phusion High-Fidelity DNA Polymerase (Thermo Scientific), as per the manufacturer’s instructions. For each 20 uL of reaction, 1 uL of the multiplex RT-PCR reaction products was used as templates. The thermal cycling conditions were as follows: 98°C for 30 seconds, 15 cycles of 98°C for 10 seconds, 65°C for 30 seconds, 72°C for 30 seconds, and a final extension step at 72°C for 5 minutes. The resulting libraries were pooled and sequenced.

treatment_protocol: Twenty-four hours prior to transfection, CGR8 and N2A cells were seeded in 96-well plates, 3000 and 5000 cells per well, respectively. Cells were transfected with the SMARTpool siRNAs at 50 nM final concentration using DharmaFECT1 reagent (Dharmacon), as recommended by the manufacturer.

tag: cell line


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mbd1 knockdown (T0375), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CTCACTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mcm3 knockdown (T0371), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CCGCTATT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mecp2 knockdown (T0374), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CTACGTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Plrg1 knockdown (T0390), replicate 1

description:
Forward (i5) barcode: ACACAGCT, reverse (i7) barcode: ATCCTACC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nbn knockdown (T0379), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TAGCCGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nr1h2 knockdown (T0370), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TATTGCGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nol3 knockdown (T0369), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: GTCAGTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nfe2l2 knockdown (T0367), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CCTATAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ppan knockdown (T0368), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: ATGGAACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ppargc1a knockdown (T0377), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TAGGTTCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Matr3 knockdown (T0362), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: GATCTGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Npas1 knockdown (T0382), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: GATGCAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nsd1 knockdown (T0361), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: ACACCACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nr6a1 knockdown (T0359), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TGCTAGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Phox2a knockdown (T0372), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: ACAGTGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Pcbp2 knockdown (T0363), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TAGGCCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ndel1 knockdown (T0355), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TAATCGGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nr1d1 knockdown (T0357), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TGGTTCCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Prkrir knockdown (T0356), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TGTCCACT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Msh3 knockdown (T0358), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CACTTGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ncoa3 knockdown (T0365), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TTGCGCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ppm1g knockdown (T0366), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CAGTCTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mef2d knockdown (T0349), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: AACCTACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mcm7 knockdown (T0348), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CTACTGGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Phf2 knockdown (T0351), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: GTCTCACT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nusap1 knockdown (T0350), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: GATCGATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mcm4 knockdown (T0353), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TGAGGTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ybx1 knockdown (T0344), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TGCAGAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Orc6 knockdown (T0341), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: GTCAAGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siMbnl (T0345), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CGTTAACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Spen knockdown (T0342), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TCGTAGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Pcna knockdown (T0352), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TCTGCTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Pcbp4 knockdown (T0339), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TCAGGAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mcts1 knockdown (T0340), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: ATCCGGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mcm6 knockdown (T0360), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CAAGTCGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mre11a knockdown (T0338), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: AGGTACGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ncor1 knockdown (T0336), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: ACGACATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Pou6f1 knockdown (T0335), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TGTCTCAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mbd2 knockdown (T0337), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: GAAGAGGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nfe2l1 knockdown (T0354), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: AGTGGACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Prim2 knockdown (T0334), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CGCGTAAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siNT (T0333), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TAGGTTGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ndrg1 knockdown (T0331), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: GACATGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Paxip1 knockdown (T0330), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TCCTCTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nr1d2 knockdown (T0329), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CTAGTCCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mlh1 knockdown (T0347), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: GGTAATGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mcm5 knockdown (T0328), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CACTTCAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ndrg2 knockdown (T0343), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TGAGTGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siMbnl (T0327), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TTGGCGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nr2f6 knockdown (T0325), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: AAGCTTCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mbtd1 knockdown (T0323), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: GATGGTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nfyb knockdown (T0321), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: AAGCCGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mef2a knockdown (T0322), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: GACACTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Phip knockdown (T0320), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: GAAGACGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, mock (T0315), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: ACTCAGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nde1 knockdown (T0317), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CTAGCAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mki67ip knockdown (T0314), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: GGCGAATA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mcm2 knockdown (T0316), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TTCCGCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mll1 knockdown (T0319), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CTTCCTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nr4a1 knockdown (T0318), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CTCATCTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mbd3 knockdown (T0324), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: ACTGTCAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ncor2 knockdown (T0346), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: TACGTAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Phox2b knockdown (T0312), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CCTTATGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nfil3 knockdown (T0313), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: AGACCAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Msh6 knockdown (T0332), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TACGCCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ppargc1b knockdown (T0308), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: ACCAACGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Tgs1 knockdown (T0304), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: ATCGCGAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mllt10 knockdown (T0303), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TACCATGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hspa4l knockdown (T0307), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: AGGTCTTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nras knockdown (T0326), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: AGGTTCCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mxd4 knockdown (T0310), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CCTAGCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Pbx3 knockdown (T0301), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TGTGGTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Npm1 knockdown (T0302), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CAGTTGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mcm3ap knockdown (T0311), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TCGTTGGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Pes1 knockdown (T0299), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: ATAACCGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mdm4 knockdown (T0305), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: GCGCAATT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Pafah1b1 knockdown (T0300), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TGTCCTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mki67 knockdown (T0293), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: GGTATTCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nktr knockdown (T0295), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CCTTGGTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Phf1 knockdown (T0296), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CTTCTGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mybl2 knockdown (T0292), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TTCCTAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Msh2 knockdown (T0290), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CACTCAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kat2b knockdown (T0306), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: TCGAAGCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siNT (T0289), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CCAATACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Pbx2 knockdown (T0291), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CAGAGTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, mock (T0288), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TCGTTCGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kin knockdown (T0286), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: ACTCTGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hmgn1 knockdown (T0285), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: GTCTAGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Phc1 knockdown (T0298), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CCGCATAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Foxd3 knockdown (T0283), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: GAAGCTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kifap3 knockdown (T0281), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CTACCTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ivns1abp knockdown (T0284), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TCTGAGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Foxd1 knockdown (T0282), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CACTCTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kras knockdown (T0280), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: ACCACTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kif2c knockdown (T0279), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TTGGTTCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hnrnpul1 knockdown (T0277), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TCCTCAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mbd4 knockdown (T0294), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: GGTTGCTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Id2 knockdown (T0278), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: ACCTGATG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Foxh1 knockdown (T0276), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: GGCGTTAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Foxj2 knockdown (T0275), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: GGATAAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hspa8 knockdown (T0287), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TAGCGGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kifc5b knockdown (T0273), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TCTGGACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, H2afx knockdown (T0274), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: ACGTTGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ing1 knockdown (T0271), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CGAATTCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Fxr1 knockdown (T0269), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TTCCGGTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdac5 knockdown (T0267), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CCATCGTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hand2 knockdown (T0268), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CTGAGAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdac7 knockdown (T0264), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TCGAGTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ndc80 knockdown (T0266), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TACCAAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Krr1 knockdown (T0272), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TATAGCCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kdm5a knockdown (T0270), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CCTAGCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kif22 knockdown (T0265), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: GGTTCCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hnrnpk knockdown (T0263), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: AGCAGTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Foxm1 knockdown (T0261), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: GGATGGAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Mnt knockdown (T0364), replicate 1

description:
Forward (i5) barcode: CTAAGCCT, reverse (i7) barcode: CGTTGCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, H2afz knockdown (T0257), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CTGACTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hmbs knockdown (T0255), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: AGGATGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hmga1 knockdown (T0254), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TTATGGCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdac11 knockdown (T0252), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: AGTGAGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Klf4 knockdown (T0251), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TGACAGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Fxr2 knockdown (T0256), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: GTTCGTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Khsrp knockdown (T0253), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: ATCGAAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hist1h1c knockdown (T0259), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CAACGAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siMbnl (T0249), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TTATCCGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hivep2 knockdown (T0258), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CTTGACCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hspa2 knockdown (T0250), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: GTTCAGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hmgxb4 knockdown (T0248), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: AGACTCAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nfyc knockdown (T0309), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: GAGTCTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hat1 knockdown (T0247), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: AGGTGAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, G3bp1 knockdown (T0260), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: TTGGCCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ing4 knockdown (T0239), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CTAGACCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Khdrbs1 knockdown (T0240), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GCATCCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ing3 knockdown (T0246), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CGGCTATA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Prmt2 knockdown (T0262), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: AGCTAGCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Fus knockdown (T0238), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: AGTGTCTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Jund knockdown (T0244), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: ATGCAACC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdac1 knockdown (T0241), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: ACAGGTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, H2afy2 knockdown (T0242), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: AGAGGACT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kdm5b knockdown (T0235), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CTGATCAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ilf3 knockdown (T0243), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: CATCCTTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siNT (T0237), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GATGTCCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kif23 knockdown (T0236), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CTTGTGCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Men1 knockdown (T0234), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: ATCGTAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hmgn3 knockdown (T0233), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GTCTACAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siMbnl (T0231), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CTCTCACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Junb knockdown (T0230), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TGCTCATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Srsf10 knockdown (T0227), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GTGACACT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Klf13 knockdown (T0229), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CCTTGCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Jun knockdown (T0225), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TGAGGTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ing2 knockdown (T0226), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GACAGTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Fmr1 knockdown (T0228), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TCTCGTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdac6 knockdown (T0245), replicate 1

description:
Forward (i5) barcode: ACTGCATA, reverse (i7) barcode: GGTACGTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Xrcc6 knockdown (T0224), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CATGGATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ilf2 knockdown (T0221), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GACTTGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, H2afy knockdown (T0223), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CGCCTTAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Gtf2f2 knockdown (T0222), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GAACCTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, H3f3b knockdown (T0220), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GCATAACC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, mock (T0219), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GTTGCAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdlbp knockdown (T0218), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: AGTGGTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hlcs knockdown (T0217), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TGTCCAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Igf2bp1 knockdown (T0215), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CTAGCTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hmgb3 knockdown (T0214), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CATCAGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdac2 knockdown (T0213), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GTCAGAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Prmt1 knockdown (T0216), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: ATGCGCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Fosl2 knockdown (T0211), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: ATTACGCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hmgn2 knockdown (T0212), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: AGAGACAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdac3 knockdown (T0209), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: AGCTGTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hr knockdown (T0232), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: AGGAAGCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Igf2bp3 knockdown (T0205), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GTAGTCGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hmg20a knockdown (T0206), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: ACTCCTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Grsf1 knockdown (T0203), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: ATGCTTCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Foxn2 knockdown (T0199), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TCAGCACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ssh1 knockdown (T0202), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: ACGTGATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Jarid2 knockdown (T0201), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TTCCTTGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Myod1 knockdown (T0197), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TCAGACTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kif4 knockdown (T0196), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: ACCACTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hspa5 knockdown (T0204), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CGATGGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Aktip knockdown (T0194), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TCCTTGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Aff2 knockdown (T0198), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TGCTAGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdac10 knockdown (T0200), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: CGAATTGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siNT (T0193), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: TCCAACGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, mock (T0192), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: GATGAGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hes6 knockdown (T0195), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: AGACGACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kat5 knockdown (T0208), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GTACGATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdgf knockdown (T0207), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: ACACTCAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ik knockdown (T0210), replicate 1

description:
Forward (i5) barcode: GTAAGGAG, reverse (i7) barcode: GGTTATGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cbx1 knockdown (T0191), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: ACTCAGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nxt1 knockdown (T0297), replicate 1

description:
Forward (i5) barcode: AAGGAGTA, reverse (i7) barcode: CGAACCTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dclre1b knockdown (T0186), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: ATGGCCTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Chd2 knockdown (T0189), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TACGCGAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dbp knockdown (T0187), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: GCGGATAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cops5 knockdown (T0188), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: GCATCCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ep300 knockdown (T0190), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: GACTGAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Atf6b knockdown (T0185), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: ACCTAGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Chd4 knockdown (T0183), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TTGCGCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cirbp knockdown (T0180), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CTGAAGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dhx16 knockdown (T0179), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CTCTCAGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Med26 knockdown (T0181), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TCACCAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Med14 knockdown (T0182), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CCATCGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Elavl3 knockdown (T0178), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TCGATCGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dek knockdown (T0177), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: AGCATCCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dnmt3b knockdown (T0175), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: AGAGAGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ezh2 knockdown (T0176), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CATCGTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Eif3g knockdown (T0171), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: AGGAACGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Celf2 knockdown (T0174), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CACTAGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cdc5l knockdown (T0172), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: GGATTAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cenpe knockdown (T0173), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: AGTCCTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cenpc1 knockdown (T0167), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CAGAGACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cbx3 knockdown (T0166), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CGATGCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ahctf1 knockdown (T0168), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TCGTCAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cenpb knockdown (T0165), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TAGGAAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Clspn knockdown (T0184), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TCAGGTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Chaf1a knockdown (T0161), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CAACAGCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dctn3 knockdown (T0163), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TGGACATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Elavl4 knockdown (T0162), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TGACACTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Csde1 knockdown (T0164), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CCTACCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Eef1a1 knockdown (T0159), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TCCAGATG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Col4a3 knockdown (T0160), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TACCGGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Crebbp knockdown (T0156), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TACCTTGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Elavl2 knockdown (T0157), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TGCTTGCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cbx8 knockdown (T0154), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: ACCTGAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siMbnl (T0153), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TTGGATCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ddx20 knockdown (T0151), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: AGGTCTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Eif3b knockdown (T0152), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TGACGACT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Med23 knockdown (T0155), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: ATGCAAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, H2afj knockdown (T0150), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: AACGAACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dpf2 knockdown (T0170), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TGTGGTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ctnnbl1 knockdown (T0147), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: TCCAACCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Drap1 knockdown (T0149), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: GTGTTGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cnbp knockdown (T0148), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: GGCCATAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Elavl1 knockdown (T0146), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: CGGCAATT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, E2f3 knockdown (T0169), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: GTTGTCCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Chd1 knockdown (T0143), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CTCAACTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cstf3 knockdown (T0145), replicate 1

description:
Forward (i5) barcode: AGAGTAGA, reverse (i7) barcode: AATAGGCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Nuf2 knockdown (T0144), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: ATATGGCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siNT (T0141), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CGTAGGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Suz12 knockdown (T0142), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: TAATGCCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ccnb1 knockdown (T0140), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: GATGGATG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Hdac9 knockdown (T0139), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CTTGGTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ubr2 knockdown (T0138), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CTGTTGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Fancd2 knockdown (T0137), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: AGCTTCGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dctn2 knockdown (T0133), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: GAGATCAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Larp4b knockdown (T0134), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CTACCAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Rbm45 knockdown (T0136), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: TTCCAAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, siMbnl (T0135), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CCTATTGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ewsr1 knockdown (T0129), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CCATAACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Csda knockdown (T0130), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: GACACAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Fubp1 knockdown (T0132), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CTTGTCCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cbx4 knockdown (T0131), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: GCTACGAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Daxx knockdown (T0128), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: TAGGATCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ints6 knockdown (T0127), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CCAAGCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Eed knockdown (T0125), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: CCATGGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cd2bp2 knockdown (T0126), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: GTGAAGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Btaf1 knockdown (T0124), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: GCGGTATT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Cnot4 knockdown (T0120), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: ATTAGCGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Clasp2 knockdown (T0119), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: AGCTGAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Csad knockdown (T0121), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: GATCCTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Eif3a knockdown (T0122), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: GAGAGTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, mock (T0123), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: AAGGTACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ercc2 knockdown (T0117), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: GGTTAACC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Trdmt1 knockdown (T0118), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: TCCATGCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dbr1 knockdown (T0116), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: TGCTCTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ccnl1 knockdown (T0114), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: TCTGGTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ciz1 knockdown (T0115), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: TCGTCATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Ezh1 knockdown (T0112), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: AGCAAGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, E2f6 knockdown (T0111), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: TCCTACGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Kdm1a knockdown (T0110), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: ATCCGCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in N2A, Dr1 knockdown (T0109), replicate 1

description:
Forward (i5) barcode: TATCCTCT, reverse (i7) barcode: TTGCTTCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.N2A.tab
Reads_perEvent_N2A.tab
Expression.N2A.treatments.tab