title: ChIP-seq from induced pluripotent stem cell (ENCLB989UDY)

description:
https://www.encodeproject.org/experiments/ENCSR729ENO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR729ENO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB989UDY
size range: 200-600

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from PC-3 (ENCLB099NRO)

status: Public on Mar 12 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR764KFK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR764KFK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-11-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB099NRO
size range: 300-600
nucleic acid starting quantity: 51.68
nucleic acid starting quantity units: ng
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens PC-3 immortalized cell line

extract_protocol: extraction method: see document

tag: antibody

tag: line

value: immortalized cell line

tag: description

value: prostate cancer cell line

tag: biosample encode accession

tag: dev stage

tag: Sex

value: male

tag: age

value: 62 year

tag: health state

value: grade IV, adenocarcinoma

tag: passage number

tag: lab

value: Bradley Bernstein, Broad

tag: link

value: ENCBS451OVM at ENCODE; https://www.encodeproject.org/ENCBS451OVM/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from hepatocyte (ENCLB551TOJ)

description:
https://www.encodeproject.org/experiments/ENCSR758GMX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR758GMX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB551TOJ
size range: 200-600
nucleic acid starting quantity: 97.5
nucleic acid starting quantity units: ng

source_name: Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from OCI-LY1 (ENCLB261TAN)

description:
https://www.encodeproject.org/experiments/ENCSR790EDQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR790EDQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB261TAN
size range: 200-600

source_name: Homo sapiens OCI-LY1 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

value: immortalized cell line

value: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983

value: 44 year

value: adult

value: male

value: B cell lymphoma

value: ENCBS397COL at ENCODE; https://www.encodeproject.org/ENCBS397COL/

value: Derived from ENCODE donor ENCDO350AAA; https://www.encodeproject.org/ENCDO350AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1879; http://web.expasy.org/cellosaurus/CVCL_1879


title: ChIP-seq from induced pluripotent stem cell (ENCLB757CPM)

description:
https://www.encodeproject.org/experiments/ENCSR729ENO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR729ENO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB757CPM
size range: 200-600

source_name: Homo sapiens induced pluripotent stem cell line male adult (53 years) derived from fibroblast of arm

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: Thomas Gingeras, CSHL

value: ENCBS373AAA at ENCODE; https://www.encodeproject.org/ENCBS373AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from MCF-7 (ENCLB425PRL)

description:
https://www.encodeproject.org/experiments/ENCSR761DLU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR761DLU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2016-10-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB425PRL
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens MCF-7 immortalized cell line

value: immortalized cell line

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: female

value: breast cancer (adenocarcinoma)

value: Bradley Bernstein, Broad

value: ENCBS789UPK at ENCODE; https://www.encodeproject.org/ENCBS789UPK/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from PC-9 (ENCLB049DKV)

description:
https://www.encodeproject.org/experiments/ENCSR726LZG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR726LZG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB049DKV
size range: 200-600

source_name: Homo sapiens PC-9 immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: ENCBS987JQH at ENCODE; https://www.encodeproject.org/ENCBS987JQH/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from K562 (ENCLB803EMW)

description:
https://www.encodeproject.org/experiments/ENCSR760UVO/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR760UVO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR264VDP
encode release date: 2016-09-12
lab: Richard Myers, HAIB
library encode accession: ENCLB803EMW

source_name: Homo sapiens K562 immortalized cell line

value: K562, myelogenous leukemia

value: 53 year

value: adult

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS316CKF at ENCODE; https://www.encodeproject.org/ENCBS316CKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from neural progenitor cell (ENCLB724RJJ)

description:
https://www.encodeproject.org/experiments/ENCSR720ZAX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR720ZAX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB724RJJ
size range: 200-600

source_name: Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from smooth muscle cell (ENCLB174DWX)

description:
https://www.encodeproject.org/experiments/ENCSR729MRJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR729MRJ
assay title: ChIP-seq
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB174DWX
size range: 200-600

source_name: Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9

value: Control

value: smooth muscle cell

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: ENCBS899TTJ at ENCODE; https://www.encodeproject.org/ENCBS899TTJ/


title: ChIP-seq from induced pluripotent stem cell (ENCLB398XWR)

description:
https://www.encodeproject.org/experiments/ENCSR740FYN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR740FYN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB398XWR
size range: 200-600

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from KMS-11 (ENCLB265LEA)

description:
https://www.encodeproject.org/experiments/ENCSR720GSE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR720GSE
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB265LEA
size range: 200-600

source_name: Homo sapiens KMS-11 immortalized cell line

value: immortalized cell line

value: multiple myeloma

value: female

value: 67 year

value: Bradley Bernstein, Broad

value: ENCBS987CHP at ENCODE; https://www.encodeproject.org/ENCBS987CHP/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from K562 (ENCLB247QKE)

description:
https://www.encodeproject.org/experiments/ENCSR760UVO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR760UVO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR264VDP
encode release date: 2016-09-12
lab: Richard Myers, HAIB
library encode accession: ENCLB247QKE

value: K562, myelogenous leukemia

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS577JGM at ENCODE; https://www.encodeproject.org/ENCBS577JGM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from MCF-7 (ENCLB635UZE)

description:
https://www.encodeproject.org/experiments/ENCSR761DLU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR761DLU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2016-10-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB635UZE
size range: 200-600

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: adult

value: breast cancer (adenocarcinoma)

value: ENCBS967MVZ at ENCODE; https://www.encodeproject.org/ENCBS967MVZ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from HepG2 (ENCLB885VBH)

description:
https://www.encodeproject.org/experiments/ENCSR759BDG/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR759BDG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB885VBH

source_name: Homo sapiens HepG2 immortalized cell line

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS303QXB at ENCODE; https://www.encodeproject.org/ENCBS303QXB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB599LVY)

description:
https://www.encodeproject.org/experiments/ENCSR759BDG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR759BDG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB599LVY

value: Richard Myers, HAIB

value: ENCBS118UBO at ENCODE; https://www.encodeproject.org/ENCBS118UBO/


title: ChIP-seq from liver (ENCLB060NXP)

description:
https://www.encodeproject.org/experiments/ENCSR769JUI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on STL010-human (fragmentation date: 2014-09-15)
experiment encode accession: ENCSR769JUI
assay title: ChIP-seq
encode release date: 2016-01-29
lab: Richard Myers, HAIB
library encode accession: ENCLB060NXP

source_name: Homo sapiens liver tissue female child (4 years)

value: Control

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: female

value: healthy

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from gastrocnemius medialis (ENCLB820SST)

description:
https://www.encodeproject.org/experiments/ENCSR736ALU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR736ALU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR001UFN
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB820SST
size range: 200-600

source_name: Homo sapiens gastrocnemius medialis tissue female adult (53 years)

value: gastrocnemius medialis

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: adult

value: 53 year

value: Bradley Bernstein, Broad

value: ENCBS866HOM at ENCODE; https://www.encodeproject.org/ENCBS866HOM/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from vagina (ENCLB777PWZ)

description:
https://www.encodeproject.org/experiments/ENCSR718BTD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR718BTD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR620XWM
encode release date: 2016-11-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB777PWZ
size range: 200-600

source_name: Homo sapiens vagina tissue female adult (53 years)

value: vagina

value: ENCBS047TWL at ENCODE; https://www.encodeproject.org/ENCBS047TWL/


title: ChIP-seq from K562 (ENCLB511FVM)

description:
https://www.encodeproject.org/experiments/ENCSR757IIU/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on K562-human
experiment encode accession: ENCSR757IIU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR129NAJ, ENCSR962APM
encode release date: 2016-03-30
lab: Richard Myers, HAIB
library encode accession: ENCLB511FVM

value: immortalized cell line

value: K562, myelogenous leukemia

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS577JGM at ENCODE; https://www.encodeproject.org/ENCBS577JGM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from vagina (ENCLB699GSB)

description:
https://www.encodeproject.org/experiments/ENCSR718BTD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR718BTD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR620XWM
encode release date: 2016-11-10
lab: Bradley Bernstein, Broad
library encode accession: ENCLB699GSB
size range: 200-600

value: tissue

value: female


title: ChIP-seq from HepG2 (ENCLB189WAI)

description:
https://www.encodeproject.org/experiments/ENCSR757EKM/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR757EKM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB189WAI

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-KLF6_isoform2 fusion protein, C-terminal FLAG-KLF6_isoform2 fusion protein

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS629SBW at ENCODE; https://www.encodeproject.org/ENCBS629SBW/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from K562 (ENCLB923AMS)

description:
https://www.encodeproject.org/experiments/ENCSR757IIU/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on K562-human
experiment encode accession: ENCSR757IIU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR129NAJ, ENCSR962APM
encode release date: 2016-03-30
lab: Richard Myers, HAIB
library encode accession: ENCLB923AMS

value: 53 year

value: adult

value: ENCBS316CKF at ENCODE; https://www.encodeproject.org/ENCBS316CKF/


title: ChIP-seq from H9 (ENCLB533UET)

description:
https://www.encodeproject.org/experiments/ENCSR754VAJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR754VAJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR625CEM
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB533UET
size range: 300-1000

source_name: Homo sapiens H9 stem cell female embryo (5 days) stably expressing C-terminal eGFP-HES5 fusion protein

value: stem cell

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter, Cells were cultured on mitotically inactivated mouse embryonic fibroblasts (MEFs) (Globalstem). Undifferentiated ES cells were maintained in medium containing DMEM/F12, 20% KSR, 1mM Glutamine, 1% Penicillin/Streptomycin, non essential amino acids and beta-mercaptoethanol. Undifferentiated ES cells were purified with pluripotency markers Tra-1-60 and PE-conjugated SSEA-3 (BD Pharmingen).

value: embryonic

value: 5 day

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS703ZDS at ENCODE; https://www.encodeproject.org/ENCBS703ZDS/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_9773; http://web.expasy.org/cellosaurus/CVCL_9773


title: ChIP-seq from H9 (ENCLB580NFP)

description:
https://www.encodeproject.org/experiments/ENCSR716ZJH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR716ZJH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR625CEM
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB580NFP
size range: 200-600
nucleic acid starting quantity: 136
nucleic acid starting quantity units: ng

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter

value: female

value: ENCBS769EPD at ENCODE; https://www.encodeproject.org/ENCBS769EPD/


title: ChIP-seq from MCF-7 (ENCLB179AON)

description:
https://www.encodeproject.org/experiments/ENCSR752UOD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR752UOD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2016-06-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB179AON
size range: 200-600

value: immortalized cell line

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS967MVZ at ENCODE; https://www.encodeproject.org/ENCBS967MVZ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from neural cell (ENCLB760LUD)

description:
https://www.encodeproject.org/experiments/ENCSR714KGG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR714KGG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB760LUD
size range: 200-600

source_name: Homo sapiens neural in vitro differentiated cells male embryo

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: male

value: unknown

value: ENCBS737HIZ at ENCODE; https://www.encodeproject.org/ENCBS737HIZ/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from A673 (ENCLB823XKP)

description:
https://www.encodeproject.org/experiments/ENCSR714TJD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR714TJD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR196CXJ
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB823XKP
size range: 200-600

source_name: Homo sapiens A673 immortalized cell line

value: Cell line is A673; this is a purchasable public domain cell type per Miguel Rivera, M.D.

value: female

value: 15 year

value: Bradley Bernstein, Broad

value: ENCBS615MBV at ENCODE; https://www.encodeproject.org/ENCBS615MBV/

value: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/

value: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080


title: ChIP-seq from induced pluripotent stem cell (ENCLB073AQU)

description:
https://www.encodeproject.org/experiments/ENCSR700VCN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR700VCN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2017-01-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB073AQU
size range: 200-600

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS373AAA at ENCODE; https://www.encodeproject.org/ENCBS373AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from OCI-LY3 (ENCLB556LRH)

description:
https://www.encodeproject.org/experiments/ENCSR701ZDB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR701ZDB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR361GKY
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB556LRH
size range: 300-600

source_name: Homo sapiens OCI-LY3 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

value: immortalized cell line

value: Oci-Ly-3- Immortalized diffuse large B cell lymphoma cell line developed at the Ontario Cancer Institute

value: 52 year

value: male

value: B cell lymphoma

value: ENCBS757GPD at ENCODE; https://www.encodeproject.org/ENCBS757GPD/

value: Derived from ENCODE donor ENCDO355AAA; https://www.encodeproject.org/ENCDO355AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_8800; http://web.expasy.org/cellosaurus/CVCL_8800


title: ChIP-seq from neural progenitor cell (ENCLB426DVL)

description:
https://www.encodeproject.org/experiments/ENCSR720ZAX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR720ZAX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB426DVL
size range: 200-600
nucleic acid starting quantity: 17.05
nucleic acid starting quantity units: ng

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from KMS-11 (ENCLB995ZFR)

description:
https://www.encodeproject.org/experiments/ENCSR720GSE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR720GSE
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB995ZFR
size range: 200-600

value: Control

value: immortalized cell line

value: multiple myeloma

value: adult

value: 67 year

value: Bradley Bernstein, Broad

value: ENCBS682HMC at ENCODE; https://www.encodeproject.org/ENCBS682HMC/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from MM.1S (ENCLB549IPX)

description:
https://www.encodeproject.org/experiments/ENCSR698CKZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR698CKZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB549IPX
size range: 300-600

source_name: Homo sapiens MM.1S immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS241TLI at ENCODE; https://www.encodeproject.org/ENCBS241TLI/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from MCF-7 (ENCLB356TON)

description:
https://www.encodeproject.org/experiments/ENCSR752UOD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR752UOD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2016-06-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB356TON
size range: 200-600

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: female

value: breast cancer (adenocarcinoma)

value: ENCBS789UPK at ENCODE; https://www.encodeproject.org/ENCBS789UPK/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from OCI-LY7 (ENCLB242PNW)

description:
https://www.encodeproject.org/experiments/ENCSR747ZDF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR747ZDF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR063AUO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB242PNW
size range: 200-600

source_name: Homo sapiens OCI-LY7 immortalized cell line

value: immortalized cell line

value: established from the peripheral blood sample of a 48-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL, diffuse large cell lymphoma, DLCL, stage 2A, at relapse) in 1984

value: 48 year

value: adult

value: male

value: B cell lymphoma

value: Bradley Bernstein, Broad

value: ENCBS121JKZ at ENCODE; https://www.encodeproject.org/ENCBS121JKZ/

value: Derived from ENCODE donor ENCDO351AAA; https://www.encodeproject.org/ENCDO351AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1881; http://web.expasy.org/cellosaurus/CVCL_1881


title: ChIP-seq from HepG2 (ENCLB593SAS)

description:
https://www.encodeproject.org/experiments/ENCSR745VSQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR745VSQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB593SAS

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-GMEB2 fusion protein, N-terminal FLAG-GMEB2 fusion protein

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS305BGC at ENCODE; https://www.encodeproject.org/ENCBS305BGC/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from MM.1S (ENCLB848ITN)

description:
https://www.encodeproject.org/experiments/ENCSR698CKZ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR698CKZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB848ITN
size range: 300-600
nucleic acid starting quantity: 38.42
nucleic acid starting quantity units: ng

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS241TLI at ENCODE; https://www.encodeproject.org/ENCBS241TLI/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from HepG2 (ENCLB296CNM)

description:
https://www.encodeproject.org/experiments/ENCSR745VSQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR745VSQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB296CNM

value: immortalized cell line

value: male

value: ENCBS358BEO at ENCODE; https://www.encodeproject.org/ENCBS358BEO/


title: ChIP-seq from MM.1S (ENCLB981EEH)

description:
https://www.encodeproject.org/experiments/ENCSR698CKZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR698CKZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB981EEH
size range: 300-600
nucleic acid starting quantity: 28.492
nucleic acid starting quantity units: ng

value: adult

value: Bradley Bernstein, Broad

value: ENCBS981ZAE at ENCODE; https://www.encodeproject.org/ENCBS981ZAE/


title: ChIP-seq from induced pluripotent stem cell (ENCLB483PCH)

description:
https://www.encodeproject.org/experiments/ENCSR700VCN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR700VCN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2017-01-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB483PCH
size range: 200-600

source_name: Homo sapiens induced pluripotent stem cell line male adult (53 years) derived from fibroblast of arm

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: Thomas Gingeras, CSHL

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from A673 (ENCLB600ZPF)

description:
https://www.encodeproject.org/experiments/ENCSR747BYL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR747BYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR196CXJ
encode release date: 2017-01-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB600ZPF
size range: 200-600
nucleic acid starting quantity: 0.191
nucleic acid starting quantity units: ng
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: Cell line is A673; this is a purchasable public domain cell type per Miguel Rivera, M.D.

value: unknown

value: female

value: 15 year

value: ENCBS385OLC at ENCODE; https://www.encodeproject.org/ENCBS385OLC/

value: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/

value: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080


title: ChIP-seq from MM.1S (ENCLB163CLJ)

description:
https://www.encodeproject.org/experiments/ENCSR698CKZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR698CKZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB163CLJ
size range: 300-600

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: 42 year

value: immunoglobulin A lambda myeloma

value: Bradley Bernstein, Broad

value: ENCBS241TLI at ENCODE; https://www.encodeproject.org/ENCBS241TLI/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from gastrocnemius medialis (ENCLB428FAV)

description:
https://www.encodeproject.org/experiments/ENCSR697RIW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR697RIW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR897RRA
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB428FAV
size range: 200-600

source_name: Homo sapiens gastrocnemius medialis tissue male adult (54 years)

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: male

value: 54 year

value: ENCBS693QTT at ENCODE; https://www.encodeproject.org/ENCBS693QTT/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from hepatocyte (ENCLB786QBI)

description:
https://www.encodeproject.org/experiments/ENCSR695HYL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR695HYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB786QBI
size range: 200-600

source_name: Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from gastrocnemius medialis (ENCLB561YSN)

description:
https://www.encodeproject.org/experiments/ENCSR697RIW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR697RIW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR897RRA
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB561YSN
size range: 200-600

value: gastrocnemius medialis

value: adult

value: Bradley Bernstein, Broad


title: ChIP-seq from HepG2 (ENCLB116FAA)

description:
https://www.encodeproject.org/experiments/ENCSR757EKM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR757EKM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB116FAA

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS120UGW at ENCODE; https://www.encodeproject.org/ENCBS120UGW/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from PC-9 (ENCLB605CTR)

description:
https://www.encodeproject.org/experiments/ENCSR726LZG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR726LZG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB605CTR
size range: 200-600

source_name: Homo sapiens PC-9 immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from K562 (ENCLB327PCS)

description:
https://www.encodeproject.org/experiments/ENCSR737LTZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on K562-human
experiment encode accession: ENCSR737LTZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR599SPN, ENCSR996HUG
encode release date: 2016-04-01
lab: Richard Myers, HAIB
library encode accession: ENCLB327PCS

source_name: Homo sapiens K562 immortalized cell line

value: MYNN

value: K562, myelogenous leukemia

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS316CKF at ENCODE; https://www.encodeproject.org/ENCBS316CKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB517YYF)

description:
https://www.encodeproject.org/experiments/ENCSR737LTZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on K562-human
experiment encode accession: ENCSR737LTZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR599SPN, ENCSR996HUG
encode release date: 2016-04-01
lab: Richard Myers, HAIB
library encode accession: ENCLB517YYF

value: immortalized cell line

value: adult

value: ENCBS602AAA at ENCODE; https://www.encodeproject.org/ENCBS602AAA/


title: ChIP-seq from KOPT-K1 (ENCLB816SDC)

description:
https://www.encodeproject.org/experiments/ENCSR719FEJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR719FEJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255BOF
encode release date: 2016-11-17
lab: Bradley Bernstein, Broad
library encode accession: ENCLB816SDC
size range: 200-600

source_name: Homo sapiens KOPT-K1 immortalized cell line

value: cells from Birgit; a human T-ALL cell line with a chromosome translocation breakpoint at t(11;14)(p13;q11) affecting the putative oncoprotein

value: unknown

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS345YKN at ENCODE; https://www.encodeproject.org/ENCBS345YKN/

value: Derived from ENCODE donor ENCDO568LPD; https://www.encodeproject.org/ENCDO568LPD/

value: ENCODE dbxrefs Cellosaurus CVCL_4965; http://web.expasy.org/cellosaurus/CVCL_4965


title: ChIP-seq from KOPT-K1 (ENCLB958OJS)

description:
https://www.encodeproject.org/experiments/ENCSR719FEJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR719FEJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255BOF
encode release date: 2016-11-17
lab: Bradley Bernstein, Broad
library encode accession: ENCLB958OJS
size range: 200-600

value: ENCBS869LIS at ENCODE; https://www.encodeproject.org/ENCBS869LIS/


title: ChIP-seq from OCI-LY3 (ENCLB077QKB)

description:
https://www.encodeproject.org/experiments/ENCSR701ZDB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR701ZDB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR361GKY
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB077QKB
size range: 200-600

value: Oci-Ly-3- Immortalized diffuse large B cell lymphoma cell line developed at the Ontario Cancer Institute

value: 52 year

value: male

value: B cell lymphoma

value: ENCBS018GXW at ENCODE; https://www.encodeproject.org/ENCBS018GXW/

value: Derived from ENCODE donor ENCDO355AAA; https://www.encodeproject.org/ENCDO355AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_8800; http://web.expasy.org/cellosaurus/CVCL_8800


title: ChIP-seq from hepatocyte (ENCLB009QUF)

description:
https://www.encodeproject.org/experiments/ENCSR695HYL/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR695HYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB009QUF
size range: 200-600

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from hepatocyte (ENCLB809ERS)

description:
https://www.encodeproject.org/experiments/ENCSR695HYL/
***************
biological replicate number: 2
technical replicate number: 3
description:
experiment encode accession: ENCSR695HYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB809ERS
size range: 200-600

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/


title: ChIP-seq from liver (ENCLB602DKY)

description:
https://www.encodeproject.org/experiments/ENCSR735KEY/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on FOXA1-human
experiment encode accession: ENCSR735KEY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR621CSR, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB602DKY

source_name: Homo sapiens liver tissue male adult (32 years)

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from hepatocyte (ENCLB751RVT)

description:
https://www.encodeproject.org/experiments/ENCSR695HYL/
***************
biological replicate number: 2
technical replicate number: 4
description:
experiment encode accession: ENCSR695HYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB751RVT
size range: 200-600

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic


title: ChIP-seq from H9 (ENCLB917LJA)

description:
https://www.encodeproject.org/experiments/ENCSR716ZJH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR716ZJH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR625CEM
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB917LJA
size range: 300-1000

value: stem cell

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter, Cells were cultured on mitotically inactivated mouse embryonic fibroblasts (MEFs) (Globalstem). Undifferentiated ES cells were maintained in medium containing DMEM/F12, 20% KSR, 1mM Glutamine, 1% Penicillin/Streptomycin, non essential amino acids and beta-mercaptoethanol. Undifferentiated ES cells were purified with pluripotency markers Tra-1-60 and PE-conjugated SSEA-3 (BD Pharmingen).

value: female

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS703ZDS at ENCODE; https://www.encodeproject.org/ENCBS703ZDS/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_9773; http://web.expasy.org/cellosaurus/CVCL_9773


title: ChIP-seq from hepatocyte (ENCLB389QNO)

description:
https://www.encodeproject.org/experiments/ENCSR695HYL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR695HYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB389QNO
size range: 200-600

value: Richard Myers, HAIB

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/


title: ChIP-seq from liver (ENCLB010AEL)

description:
https://www.encodeproject.org/experiments/ENCSR735KEY/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on FOXA1-human
experiment encode accession: ENCSR735KEY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR621CSR, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB010AEL

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/


title: ChIP-seq from HepG2 (ENCLB849PTC)

description:
https://www.encodeproject.org/experiments/ENCSR715UCI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR715UCI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB849PTC

source_name: Homo sapiens HepG2 immortalized cell line

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS362ECJ at ENCODE; https://www.encodeproject.org/ENCBS362ECJ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from NCI-H929 (ENCLB752YQL)

description:
https://www.encodeproject.org/experiments/ENCSR692HIO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR692HIO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB752YQL
size range: 200-600

source_name: Homo sapiens NCI-H929 immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: female

value: 62 year

value: multiple myeloma

value: Bradley Bernstein, Broad

value: ENCBS571AQH at ENCODE; https://www.encodeproject.org/ENCBS571AQH/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from mid-neurogenesis radial glial cells (ENCLB264XWF)

description:
https://www.encodeproject.org/experiments/ENCSR691BNO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR691BNO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR287XMW
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB264XWF
size range: 200-600

source_name: Homo sapiens mid-neurogenesis radial glial in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein

value: mid-neurogenesis radial glial cells

value: in vitro differentiated cells

value: Mid neurogenesis radial glial cells were collected at day 35 of differentiation (see protocol)

value: embryonic

value: 5 day

value: healthy

value: ENCBS355KGI at ENCODE; https://www.encodeproject.org/ENCBS355KGI/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from HepG2 (ENCLB425HBV)

description:
https://www.encodeproject.org/experiments/ENCSR716SYG/
***************
biological replicate number: 9
technical replicate number: 2
description: Reverse Crosslink Control ChIP-seq on human HepG2 (fragmentation date 02-19-14)
experiment encode accession: ENCSR716SYG
assay title: ChIP-seq
encode release date: 2016-01-08
lab: Richard Myers, HAIB
library encode accession: ENCLB425HBV
size range: 100-500

value: Control

value: immortalized cell line

value: HepG2, hepatocellular carcinoma

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS250DDC at ENCODE; https://www.encodeproject.org/ENCBS250DDC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB682ERW)

description:
https://www.encodeproject.org/experiments/ENCSR714YZG/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR714YZG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR716SYG, ENCSR524VNV
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB682ERW

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from body of pancreas (ENCLB267NCW)

description:
https://www.encodeproject.org/experiments/ENCSR689SFJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR689SFJ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB267NCW
size range: 200-600
nucleic acid starting quantity: 106.2
nucleic acid starting quantity units: ng

source_name: Homo sapiens body of pancreas tissue male adult (37 years)

value: body of pancreas

value: tissue

value: adult

value: 37 year

value: Bradley Bernstein, Broad

value: ENCBS869MHP at ENCODE; https://www.encodeproject.org/ENCBS869MHP/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from hepatocyte (ENCLB284ZPJ)

description:
https://www.encodeproject.org/experiments/ENCSR695HYL/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR695HYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB284ZPJ
size range: 200-600

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from NCI-H929 (ENCLB543XRW)

description:
https://www.encodeproject.org/experiments/ENCSR692HIO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR692HIO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB543XRW
size range: 200-600

value: immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: 62 year

value: multiple myeloma

value: ENCBS197CBA at ENCODE; https://www.encodeproject.org/ENCBS197CBA/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from A673 (ENCLB606JWW)

description:
https://www.encodeproject.org/experiments/ENCSR714TJD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR714TJD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR196CXJ
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB606JWW
size range: 200-600
nucleic acid starting quantity: 0.381
nucleic acid starting quantity units: ng

value: Cell line is A673; this is a purchasable public domain cell type per Miguel Rivera, M.D.

value: unknown

value: 15 year

value: Bradley Bernstein, Broad

value: ENCBS385OLC at ENCODE; https://www.encodeproject.org/ENCBS385OLC/

value: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/

value: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080


title: ChIP-seq from HepG2 (ENCLB805WKO)

description:
https://www.encodeproject.org/experiments/ENCSR715UCI/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR715UCI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB805WKO

value: child

value: male

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS937FXB at ENCODE; https://www.encodeproject.org/ENCBS937FXB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from GM12878 (ENCLB641JSN)

description:
https://www.encodeproject.org/experiments/ENCSR713ONE/
***************
biological replicate number: 10
technical replicate number: 2
description: Reverse Crosslink Control ChIP-seq on human GM12878 (fragmentation date 11-12-12)
experiment encode accession: ENCSR713ONE
assay title: ChIP-seq
encode release date: 2016-01-08
lab: Richard Myers, HAIB
library encode accession: ENCLB641JSN
size range: 100-500

source_name: Homo sapiens GM12878 immortalized cell line

value: Control

value: immortalized cell line

value: GM12878, B-lymphocyte, lymphoblastoid

value: adult

value: female

value: ENCBS845TXY at ENCODE; https://www.encodeproject.org/ENCBS845TXY/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878


title: ChIP-seq from neural cell (ENCLB099SCI)

description:
https://www.encodeproject.org/experiments/ENCSR714KGG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR714KGG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB099SCI
size range: 300-800

source_name: Homo sapiens neural in vitro differentiated cells male embryo

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: unknown

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS504GFW at ENCODE; https://www.encodeproject.org/ENCBS504GFW/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from hepatocyte (ENCLB522NNA)

description:
https://www.encodeproject.org/experiments/ENCSR689QUB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR689QUB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB522NNA
size range: 200-600

value: hepatocyte

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: Richard Myers, HAIB

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from HepG2 (ENCLB926VQW)

description:
https://www.encodeproject.org/experiments/ENCSR714YZG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR714YZG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR716SYG, ENCSR524VNV
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB926VQW

value: immortalized cell line

value: HepG2, hepatocellular carcinoma

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS250DDC at ENCODE; https://www.encodeproject.org/ENCBS250DDC/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB675CWO)

description:
https://www.encodeproject.org/experiments/ENCSR712FAM/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR712FAM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB675CWO

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ZSCAN9 fusion protein, N-terminal FLAG-ZSCAN9 fusion protein

value: ENCBS685SMS at ENCODE; https://www.encodeproject.org/ENCBS685SMS/


title: ChIP-seq from neuroepithelial stem cell (ENCLB717TKR)

description:
https://www.encodeproject.org/experiments/ENCSR688ZOS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR688ZOS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR803UDX
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB717TKR
size range: 200-600

source_name: Homo sapiens neuroepithelial stem in vitro differentiated cells female embryo (5 days) stably expressing C-terminal eGFP-HES5 fusion protein

value: neuroepithelial stem cell

value: in vitro differentiated cells

value: Neuroepithelial cells were collected at day 12 of differentiation (see protocol)

value: embryonic

value: female

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS592DOF at ENCODE; https://www.encodeproject.org/ENCBS592DOF/


title: ChIP-seq from radial glial cell (ENCLB929VWI)

description:
https://www.encodeproject.org/experiments/ENCSR689ICI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR689ICI
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB929VWI
size range: 200-600

source_name: Homo sapiens radial glial in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein

value: Control

value: radial glial cell

value: Early Radial Glia were collected at day 14 of differentiation (see protocol)

value: 5 day

value: ENCBS008AOU at ENCODE; https://www.encodeproject.org/ENCBS008AOU/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from MM.1S (ENCLB384NWP)

description:
https://www.encodeproject.org/experiments/ENCSR684BMS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR684BMS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB384NWP
size range: 300-600
nucleic acid starting quantity: 164.22
nucleic acid starting quantity units: ng

source_name: Homo sapiens MM.1S immortalized cell line

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS205VYW at ENCODE; https://www.encodeproject.org/ENCBS205VYW/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from body of pancreas (ENCLB405JXR)

description:
https://www.encodeproject.org/experiments/ENCSR689SFJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR689SFJ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB405JXR
size range: 200-600
nucleic acid starting quantity: 41.0
nucleic acid starting quantity units: ng

value: body of pancreas

value: tissue

value: male

value: 37 year

value: ENCBS869MHP at ENCODE; https://www.encodeproject.org/ENCBS869MHP/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from K562 (ENCLB222MGD)

description:
https://www.encodeproject.org/experiments/ENCSR707QWA/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR707QWA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR264VDP
encode release date: 2016-06-28
lab: Richard Myers, HAIB
library encode accession: ENCLB222MGD

value: K562, myelogenous leukemia

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS316CKF at ENCODE; https://www.encodeproject.org/ENCBS316CKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from MM.1S (ENCLB553XGY)

description:
https://www.encodeproject.org/experiments/ENCSR684BMS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR684BMS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB553XGY
size range: 300-600
nucleic acid starting quantity: 221
nucleic acid starting quantity units: ng

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: 42 year

value: immunoglobulin A lambda myeloma

value: Bradley Bernstein, Broad

value: ENCBS981ZAE at ENCODE; https://www.encodeproject.org/ENCBS981ZAE/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/


title: ChIP-seq from HepG2 (ENCLB860DER)

description:
https://www.encodeproject.org/experiments/ENCSR711HPO/
***************
biological replicate number: 8
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human HepG2 (fragmentation date 04-19-13)
experiment encode accession: ENCSR711HPO
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB860DER

extract_protocol:
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

value: Control

value: HepG2, hepatocellular carcinoma

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS399FDJ at ENCODE; https://www.encodeproject.org/ENCBS399FDJ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from bipolar spindle neuron (ENCLB629SEB)

description:
https://www.encodeproject.org/experiments/ENCSR683ORH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR683ORH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB629SEB
size range: 200-600

source_name: Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: Thomas Gingeras, CSHL

value: ENCBS374AAA at ENCODE; https://www.encodeproject.org/ENCBS374AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from PC-9 (ENCLB483IJO)

description:
https://www.encodeproject.org/experiments/ENCSR705SZP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR705SZP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB483IJO
size range: 200-600

value: immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from hepatocyte (ENCLB312QWK)

description:
https://www.encodeproject.org/experiments/ENCSR689QUB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR689QUB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB312QWK
size range: 200-600

value: hepatocyte

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from OCI-LY1 (ENCLB599OTU)

description:
https://www.encodeproject.org/experiments/ENCSR678AFU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR678AFU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB599OTU
size range: 200-600

source_name: Homo sapiens OCI-LY1 immortalized cell line

value: immortalized cell line

value: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983

value: 44 year

value: adult

value: male

value: B cell lymphoma

value: ENCBS899DSB at ENCODE; https://www.encodeproject.org/ENCBS899DSB/

value: Derived from ENCODE donor ENCDO350AAA; https://www.encodeproject.org/ENCDO350AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1879; http://web.expasy.org/cellosaurus/CVCL_1879


title: ChIP-seq from HepG2 (ENCLB074WSE)

description:
https://www.encodeproject.org/experiments/ENCSR704IGU/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR704IGU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB074WSE

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ZGPAT fusion protein, N-terminal FLAG-ZGPAT fusion protein

value: FLAG-ZGPAT

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS717WSM at ENCODE; https://www.encodeproject.org/ENCBS717WSM/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from PC-9 (ENCLB306WZK)

description:
https://www.encodeproject.org/experiments/ENCSR705SZP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR705SZP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB306WZK
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens PC-9 immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS987JQH at ENCODE; https://www.encodeproject.org/ENCBS987JQH/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from HepG2 (ENCLB630VJC)

description:
https://www.encodeproject.org/experiments/ENCSR712FAM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR712FAM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB630VJC

value: immortalized cell line

value: male

value: Richard Myers, HAIB

value: ENCBS970XZM at ENCODE; https://www.encodeproject.org/ENCBS970XZM/


title: ChIP-seq from neural progenitor cell (ENCLB855OWN)

description:
https://www.encodeproject.org/experiments/ENCSR677XPJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR677XPJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-11-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB855OWN
size range: 200-600
nucleic acid starting quantity: 60.06
nucleic acid starting quantity units: ng

source_name: Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from MCF-7 (ENCLB493OOD)

description:
https://www.encodeproject.org/experiments/ENCSR703TNG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on MCF7
experiment encode accession: ENCSR703TNG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR204BLL, ENCSR924PBF
encode release date: 2016-06-28
lab: Richard Myers, HAIB
library encode accession: ENCLB493OOD

source_name: Homo sapiens MCF-7 immortalized cell line stably expressing C-terminal FLAG-RAD21 fusion protein

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS974BZV at ENCODE; https://www.encodeproject.org/ENCBS974BZV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from mid-neurogenesis radial glial cells (ENCLB391SGN)

description:
https://www.encodeproject.org/experiments/ENCSR691BNO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR691BNO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR287XMW
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB391SGN
size range: 300-1000

value: mid-neurogenesis radial glial cells

value: Mid neurogenesis radial glial cells were collected at day 35 of differentiation (see protocol)

value: Bradley Bernstein, Broad

value: ENCBS741FXQ at ENCODE; https://www.encodeproject.org/ENCBS741FXQ/


title: ChIP-seq from smooth muscle cell (ENCLB457DOF)

description:
https://www.encodeproject.org/experiments/ENCSR672HBY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR672HBY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB457DOF
size range: 200-600

source_name: Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9

value: smooth muscle cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: Richard Myers, HAIB

value: ENCBS780PCJ at ENCODE; https://www.encodeproject.org/ENCBS780PCJ/


title: ChIP-seq from smooth muscle cell (ENCLB321PVL)

description:
https://www.encodeproject.org/experiments/ENCSR672HBY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR672HBY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB321PVL
size range: 200-600
nucleic acid starting quantity: 9.18
nucleic acid starting quantity units: ng

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS899TTJ at ENCODE; https://www.encodeproject.org/ENCBS899TTJ/


title: ChIP-seq from neural progenitor cell (ENCLB441MHI)

description:
https://www.encodeproject.org/experiments/ENCSR677XPJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR677XPJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-11-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB441MHI
size range: 200-600

value: neural progenitor cell

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from neuroepithelial stem cell (ENCLB678TOF)

description:
https://www.encodeproject.org/experiments/ENCSR688ZOS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR688ZOS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR803UDX
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB678TOF
size range: 200-600

source_name: Homo sapiens neuroepithelial stem in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein

value: neuroepithelial stem cell

value: Neuroepithelial cells were collected at day 12 of differentiation (see protocol)

value: ENCBS435FHS at ENCODE; https://www.encodeproject.org/ENCBS435FHS/


title: ChIP-seq from neural progenitor cell (ENCLB017NRI)

description:
https://www.encodeproject.org/experiments/ENCSR661MUS/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR661MUS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB017NRI
size range: 200-600


title: ChIP-seq from bipolar spindle neuron (ENCLB331ZJN)

description:
https://www.encodeproject.org/experiments/ENCSR683ORH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR683ORH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB331ZJN
size range: 200-600

value: bipolar spindle neuron

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from neural progenitor cell (ENCLB442FVF)

description:
https://www.encodeproject.org/experiments/ENCSR661MUS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR661MUS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB442FVF
size range: 200-600

value: in vitro differentiated cells

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB


title: ChIP-seq from K562 (ENCLB954HYL)

description:
https://www.encodeproject.org/experiments/ENCSR707QWA/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR707QWA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR264VDP
encode release date: 2016-06-28
lab: Richard Myers, HAIB
library encode accession: ENCLB954HYL

source_name: Homo sapiens K562 immortalized cell line

value: immortalized cell line

value: K562, myelogenous leukemia

value: chronic myelogenous leukemia (CML)

value: ENCBS577JGM at ENCODE; https://www.encodeproject.org/ENCBS577JGM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB184SXU)

description:
https://www.encodeproject.org/experiments/ENCSR668LDD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR668LDD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AKY
encode release date: 2016-11-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB184SXU
size range: 200-600

value: adult

value: 53 year

value: Bradley Bernstein, Broad

value: ENCBS980HYW at ENCODE; https://www.encodeproject.org/ENCBS980HYW/


title: ChIP-seq from neural progenitor cell (ENCLB442CUJ)

description:
https://www.encodeproject.org/experiments/ENCSR661MUS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR661MUS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB442CUJ
size range: 200-600
nucleic acid starting quantity: 144.5
nucleic acid starting quantity units: ng

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from SK-N-MC (ENCLB755ECL)

description:
https://www.encodeproject.org/experiments/ENCSR679CHH/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq against H3K9me3 using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
experiment encode accession: ENCSR679CHH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR899XXQ
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB755ECL
size range: 200-600

source_name: Homo sapiens SK-N-MC immortalized cell line

value: SK-N-MC

value: Please note:This cell line was previously described as a neuroepithelioma (ATCC HTB-10).  However recent evidence reveals it is Ewing's Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999, http://www.ncbi.nlm.nih.gov/pubmed/25453903).

value: child

value: female

value: 14 year

value: Ewing's sarcoma

value: ENCBS556HGY at ENCODE; https://www.encodeproject.org/ENCBS556HGY/

value: Derived from ENCODE donor ENCDO000ABC; https://www.encodeproject.org/ENCDO000ABC/

value: ENCODE dbxrefs Cellosaurus CVCL_0530; http://web.expasy.org/cellosaurus/CVCL_0530


title: ChIP-seq from SK-N-MC (ENCLB883BJL)

description:
https://www.encodeproject.org/experiments/ENCSR679CHH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against H3K9me3 using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
experiment encode accession: ENCSR679CHH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR899XXQ
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB883BJL
size range: 200-600
nucleic acid starting quantity: 261.8
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS203EZT at ENCODE; https://www.encodeproject.org/ENCBS203EZT/


title: ChIP-seq from OCI-LY1 (ENCLB644SVP)

description:
https://www.encodeproject.org/experiments/ENCSR678AFU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR678AFU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB644SVP
size range: 200-600

value: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983

value: 44 year

value: adult

value: male

value: B cell lymphoma

value: Bradley Bernstein, Broad

value: ENCBS729LWO at ENCODE; https://www.encodeproject.org/ENCBS729LWO/

value: Derived from ENCODE donor ENCDO350AAA; https://www.encodeproject.org/ENCDO350AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1879; http://web.expasy.org/cellosaurus/CVCL_1879


title: ChIP-seq from HCT116 (ENCLB519USV)

description:
https://www.encodeproject.org/experiments/ENCSR661KMA/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR661KMA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198WIH
encode release date: 2016-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB519USV
size range: 200-600

source_name: Homo sapiens HCT116 immortalized cell line

value: cells obtained from ATCC

value: unknown

value: colorectal carcinoma

value: ENCBS847SOB at ENCODE; https://www.encodeproject.org/ENCBS847SOB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/

value: ENCODE dbxrefs Cellosaurus CVCL_0291; http://web.expasy.org/cellosaurus/CVCL_0291

value: ATCC sample source; http://www.atcc.org/products/all/CCL-247.aspx#357C3571006A4259B64650D34DF19048


title: ChIP-seq from HepG2 (ENCLB602AVI)

description:
https://www.encodeproject.org/experiments/ENCSR704IGU/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR704IGU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB602AVI

value: FLAG-ZGPAT

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS100SII at ENCODE; https://www.encodeproject.org/ENCBS100SII/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from SK-N-SH (ENCLB440NYM)

description:
https://www.encodeproject.org/experiments/ENCSR661BMA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR661BMA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2016-11-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB440NYM
size range: 200-600

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: 4 year

value: female

value: Bradley Bernstein, Broad

value: ENCBS500EWH at ENCODE; https://www.encodeproject.org/ENCBS500EWH/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from MCF-7 (ENCLB446PKP)

description:
https://www.encodeproject.org/experiments/ENCSR703TNG/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on MCF7
experiment encode accession: ENCSR703TNG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR204BLL, ENCSR924PBF
encode release date: 2016-06-28
lab: Richard Myers, HAIB
library encode accession: ENCLB446PKP

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS873NNF at ENCODE; https://www.encodeproject.org/ENCBS873NNF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from HepG2 (ENCLB535RJE)

description:
https://www.encodeproject.org/experiments/ENCSR670YPQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR670YPQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB535RJE

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-DMAP1 fusion protein, N-terminal FLAG-DMAP1 fusion protein

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS385PZW at ENCODE; https://www.encodeproject.org/ENCBS385PZW/


title: ChIP-seq from radial glial cell (ENCLB784ZGZ)

description:
https://www.encodeproject.org/experiments/ENCSR689ICI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR689ICI
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB784ZGZ
size range: 300-1000

value: Control

value: radial glial cell

value: in vitro differentiated cells

value: Early Radial Glia were collected at day 14 of differentiation (see protocol)

value: embryonic

value: female

value: 5 day

value: healthy

value: ENCBS772AEX at ENCODE; https://www.encodeproject.org/ENCBS772AEX/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/