title: BPS2

city: Durham

first: Bryan

last: Cullen

state: NC

address: 213 Research Dr., 0045 CARL Bldg.

department: MGM

institute: Duke University

description: primary B cell transformed with the B95-8 EBV strain to generate a lymphoblastoid cell line (LCL)

data_processing:
Library strategy: Iso-Seq
Full length non-chimeric (flnc) reads generated using RS_IsoSeq
flnc reads aligned to the human genome (hg19) using GMAP
flnc reads that failed to align to the human genome were aligned to the B95.8 EBV genome (V01555.2)
Genome_build: hg19; V01555.2
Supplementary_files_format_and_content: bed files; human and EBV GMAP alignments on sample records, Excel file with quantified alignments on series record.

extract_protocol:
Total RNA was extracted using Trizol reagent.
50 μg total RNA was mixed with 250 pmol of the W2 probe (5’-CTTCTTAGGAGCTGTCCGAG-3’). RNA and probe were heated to 95°C for 5 min and then allowed to slowly cool to room temperature. 20 μl MyOne Streptavidin C1 Dynabeads (ThermoFisher Scientific) beads washed and resuspend in 2x streptavidin binding buffer as described above. RNA annealed to probe and beads were mixed and rotated at room temperature for 30 min. Beads were washed with wash buffer as described in section 3.5.8. Isolated transcripts were released from the beads by resuspending the beads in 100 μl wash buffer, heating to 95°C for 5 min and immediately adding to a magnet and collecting the supernatant. Isolated transcripts were then reprecipitated and resuspended in 20 μl water. Transcripts were then subject to an Iso-seq cDNA library preparation using the SMARTer PCR cDNA synthesis kit (Clontech) and size selected for 800 - 2 kb and 2 kb+ sized transcripts. SMRTbell adapters were then added to the isolated libraries.

tag: size selection

value: 2 kB+

value: Epstein-barr B95-9 infected Lymphoblastoid cell line (LCL)


title: Single P7 FB mouse dopaminergic neuron (TH_020_B01)

status: Public on Jan 31 2018

type: SRA

city: Baltimore

first: Loyal

middle: A

last: Goff

state: MD

address: 733 N. Broadway Avenue

department: Institute of Genetic Medicine

country: USA

institute: Johns Hopkins University

description: scRNA-Seq

library_source: transcriptomic

data_processing:
Paired-end reads were aligned to the mouse reference genome (mm10) supplemented with the Th-EGFP+ transgene contig, using HISAT2 with default parameters except: -p 8.
Aligned reads from individual samples were quantified against a reference transcriptome (GENCODE vM8) supplemented with the addition of the eGFP transcript.
Quantification was performed using cuffquant with default parameters and the following additional arguments: --no-update-check –p 8.
Normalized expression estimates across all samples were obtained using cuffnorm with default parameters.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text file containing a matrix of normalized FPKM expression estimates for each gene/cell

molecule: polyA RNA

organism: Mus musculus

source_name: Single P7 FB mouse Th-eGFP+ sorted dopaminergic neuron

growth_protocol: The Th:EGFP BAC transgenic mice (Tg(Th-EGFP)DJ76Gsat/Mmnc) used in this study were generated by the GENSAT Project and were purchased through the Mutant Mouse Resource & Research Centers (MMRRC) Repository. Mice were maintained on a Swiss Webster (SW) background with female SW mice obtained from Charles River Laboratories. The Tg(Th-EGFP)DJ76Gsat/Mmnc line was primarily maintained through matings between Th:EGFP positive, hemizygous male mice and wild-type SW females (dams). Timed matings for cell isolation were similarly established between hemizygous male mice and wild-type SW females. The observation of a vaginal plug was defined as embryonic day 0.5 (E0.5). All work involving mice (husbandry, colony maintenance and euthanasia) were reviewed and pre-approved by the institutional care and use committee.

extract_protocol:
Resected brain tissues were dissociated using papain (Papain Dissociation System, Worthington Biochemical Corporation; Cat#: LK003150) following the trehalose-enhanced protocol reported by Saxena, et. al, 201217 with the following modifications: The dissociation was carried out at 37oC in a sterile tissue culture cabinet. During dissociation, all tissues at all timepoints were triturated every 10 minutes using a sterile Pasteur pipette. For E15.5 tissues, this was continued for no more than 40 minutes. For P7, this was continued for up to 1.5 hours or until the tissue appeared to be completely dissociated. Additionally, for P7 tissues, after dissociation but before cell sorting, the cell pellets were passed through a discontinuous density gradient in order to remove cell debris that could impede cell sorting. This gradient was adapted from the Worthington Papain Dissociation System kit. Briefly, after completion of dissociation according to the Saxena protocol, the final cell pellet was resuspended in DNase dilute albumin-inhibitor solution, layered on top of 5 mL of albumin-inhibitor solution, and centrifuged at 70g for 6 minutes. The supernatant was then removed.  For each timepoint-region condition, pellets were resuspended in 200 μL of media without serum comprised of DMEM/F12 without phenol red, 5% trehalose (w/v), 25 μM AP-V, 100 μM kynurenic acid, and 10 μL of 40 U/μl RNase inhibitor (RNasin® Plus RNase Inhibitor, Promega) at room temperature. The resuspended cells were then passed through a 40 uM filter and introduced into a FACS machine (Beckman Coulter MoFlo Cell Sorter or Becton Dickinson FACSJazz). Viable cells were identified via propidium iodide staining, and individual neurons were sorted based on their fluorescence (EGFP+ intensity, See Figure S4B) directly into lysis buffer in individual wells of 96-well plates for single-cell sequencing (2 μL Smart-Seq2 lysis buffer + RNAase inhibitor, 1 μL oligo-dT primer, and 1 μL dNTPs) according to Picelli et al., 201418. Blank wells were used as negative controls for each plate collected. Upon completion of a sort, the plates were briefly spun in a tabletop microcentrifuge and snap-frozen on dry ice. Single cell lysates were subsequently kept at -80°C until cDNA conversion.
Library preparation and amplification of single-cell samples were performed using a modified version of the Smart-Seq2 protocol18. Briefly, 96-well plates of single cell lysates were thawed to 4°C, heated to 72°C for 3 minutes, then immediately placed on ice. Template switching first-strand cDNA synthesis was performed as described above using a 5’-biotinylated TSO oligo. cDNAs were amplified using 20 cycles of KAPA HiFi PCR and 5’-biotinylated ISPCR primer. Amplified cDNA was cleaned with a 1:1 ratio of Ampure XP beads and approximately 200 pg was used for a one-quarter standard sized Nextera XT tagmentation reaction. Tagmented fragments were amplified for 14 cycles and dual indexes were added to each well to uniquely label each library. Concentrations were assessed with Quant-iT PicoGreen dsDNA Reagent (Invitrogen) and samples were diluted to ~2 nM and pooled. Pooled libraries were sequenced on the Illumina HiSeq 2500 platform to a target mean depth of ~8.0 x 105 50bp paired-end fragments per cell at the Hopkins Genetics Research Core Facility.

treatment_protocol: At 15.5 days after the timed mating, pregnant dams were euthanized and the entire litter of embryonic day 15.5 (E15.5) embryos were dissected out of the mother and immediately placed in chilled Eagle’s Minimum Essential Media (EMEM). Individual embryos were then decapitated and heads were placed in fresh EMEM on ice. Embryonic brains were then removed and placed in Hank’s Balanced Salt Solution (HBSS) without Mg2+ and Ca2+ and manipulated while on ice. The brains were immediately observed under a fluorescent stereomicroscope and EGFP+ brains were selected. EGFP+ regions of interest in the forebrain (hypothalamus) and the midbrain were then dissected and placed in HBSS on ice. This process was repeated for each EGFP+ brain. Brain regions from four EGFP+ mouse pups were pooled together for dissociation.  For P7 brains, pregnant females were sorted into their own cages and checked daily for newly born pups. The morning the pups were born was considered day P0. Once the mice were aged to P7, all the mice from the litter were euthanized and the brains were then quickly dissected and placed in HBSS without Mg2+ and Ca2+ on ice. As before, the brains were then observed under a fluorescent microscope, EGFP+ status for P7 mice was determined, and EGFP+ brains were retained.  For each EGFP+ brain, the entire olfactory bulb was first resected and placed in HBSS on ice. Immediately thereafter, the EGFP+ forebrain and midbrain regions for each brain were resected and also placed in distinct containers of HBSS on ice. Brain regions from five EGFP+ P7 mice were pooled together for dissociation.

tag: well

value: B

value: ACTCGCTA

value: TATCCTCT

value: ACTCGCTA,TATCCTCT

tag: project

value: TH

tag: age

tag: region

value: FB

tag: cell type

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single P7 FB mouse dopaminergic neuron (TH_020_A12)

description: scRNA-Seq

value: A

value: ATCTCAGG

value: CTCTCTAT

value: ATCTCAGG,CTCTCTAT


title: Single P7 FB mouse dopaminergic neuron (TH_020_B02)

description: scRNA-Seq

value: GGAGCTAC

value: GGAGCTAC,TATCCTCT

value: FALSE


title: BPS1

molecule: total RNA

organism: Homo sapiens


title: Single P7 FB mouse dopaminergic neuron (TH_020_A10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,CTCTCTAT


title: Single P7 FB mouse dopaminergic neuron (TH_020_C07)

description: scRNA-Seq

value: C

value: CTCTCTAC

value: CCTAGAGT

value: CTCTCTAC,CCTAGAGT


title: Single P7 FB mouse dopaminergic neuron (TH_020_C04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,CCTAGAGT

value: TH


title: Single P7 FB mouse dopaminergic neuron (TH_020_A09)

description: scRNA-Seq

value: AAGAGGCA

value: AAGAGGCA,CTCTCTAT

value: FB

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single P7 FB mouse dopaminergic neuron (TH_020_C03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,CCTAGAGT


title: Single P7 FB mouse dopaminergic neuron (TH_020_C01)

description: scRNA-Seq

value: TAAGGCGA

value: TAAGGCGA,CCTAGAGT


title: Single P7 FB mouse dopaminergic neuron (TH_020_B08)

description: scRNA-Seq

value: B

value: ACTGAGCG

value: TATCCTCT

value: ACTGAGCG,TATCCTCT


title: Single P7 FB mouse dopaminergic neuron (TH_020_A08)

description: scRNA-Seq

value: A

value: CGAGGCTG

value: CTCTCTAT

value: CGAGGCTG,CTCTCTAT

value: FALSE


title: Single P7 FB mouse dopaminergic neuron (TH_020_A06)

description: scRNA-Seq

value: TAGGCATG

value: TAGGCATG,CTCTCTAT

value: TH


title: Single P7 FB mouse dopaminergic neuron (TH_020_A05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,CTCTCTAT

value: FB

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single P7 FB mouse dopaminergic neuron (TH_020_A04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,CTCTCTAT


title: Single P7 FB mouse dopaminergic neuron (TH_020_A02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,CTCTCTAT


title: Single P7 FB mouse dopaminergic neuron (TH_020_A01)

description: scRNA-Seq

value: A

value: TAAGGCGA

value: TAAGGCGA,CTCTCTAT


title: Single P7 MB mouse dopaminergic neuron (TH_018_H12)

description: scRNA-Seq

source_name: Single P7 MB mouse Th-eGFP+ sorted dopaminergic neuron

value: C

value: ATCTCAGG

value: TTATGCGA

value: ATCTCAGG,TTATGCGA

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_H06)

description: scRNA-Seq

value: TAGGCATG

value: TAGGCATG,TTATGCGA

value: TH

value: FALSE


title: Single P7 MB mouse dopaminergic neuron (TH_018_H11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,TTATGCGA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_H10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,TTATGCGA

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_H08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,TTATGCGA


title: Single P7 MB mouse dopaminergic neuron (TH_018_H09)

description: scRNA-Seq

value: C

value: AAGAGGCA

value: AAGAGGCA,TTATGCGA


title: Single P7 MB mouse dopaminergic neuron (TH_018_H07)

description: scRNA-Seq

value: CTCTCTAC

value: TTATGCGA

value: CTCTCTAC,TTATGCGA


title: Single P7 MB mouse dopaminergic neuron (TH_018_H05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,TTATGCGA

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_H02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,TTATGCGA

value: TH

value: FALSE


title: Single P7 MB mouse dopaminergic neuron (TH_018_H04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,TTATGCGA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_G12)

description: scRNA-Seq

value: B

value: TCGACGTC

value: CGTCTAAT

value: TCGACGTC,CGTCTAAT

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_G11)

description: scRNA-Seq

value: TGCAGCTA

value: TGCAGCTA,CGTCTAAT


title: Single P7 MB mouse dopaminergic neuron (TH_018_H01)

description: scRNA-Seq

value: C

value: TAAGGCGA

value: TTATGCGA

value: TAAGGCGA,TTATGCGA


title: Single P7 MB mouse dopaminergic neuron (TH_018_H03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,TTATGCGA

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_G10)

description: scRNA-Seq

value: CGATCAGT

value: CGATCAGT,CGTCTAAT

value: TH


title: Single P7 FB mouse dopaminergic neuron (TH_020_A07)

description: scRNA-Seq

value: A

value: CTCTCTAC

value: CTCTCTAT

value: CTCTCTAC,CTCTCTAT

value: FB

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_G06)

description: scRNA-Seq

value: B

value: ATGCGCAG

value: CGTCTAAT

value: ATGCGCAG,CGTCTAAT

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_G07)

description: scRNA-Seq

value: TAGCGCTC

value: TAGCGCTC,CGTCTAAT


title: Single P7 MB mouse dopaminergic neuron (TH_018_G09)

description: scRNA-Seq

value: CCTAAGAC

value: CCTAAGAC,CGTCTAAT

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_G05)

description: scRNA-Seq

value: TACGCTGC

value: TACGCTGC,CGTCTAAT

value: TH


title: Single P7 MB mouse dopaminergic neuron (TH_018_G08)

description: scRNA-Seq

value: ACTGAGCG

value: ACTGAGCG,CGTCTAAT


title: Single P7 MB mouse dopaminergic neuron (TH_018_G04)

description: scRNA-Seq

value: CGGAGCCT

value: CGGAGCCT,CGTCTAAT


title: Single P7 MB mouse dopaminergic neuron (TH_018_G03)

description: scRNA-Seq

value: B

value: GCGTAGTA

value: GCGTAGTA,CGTCTAAT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 FB mouse dopaminergic neuron (TH_020_A03)

description: scRNA-Seq

value: A

value: AGGCAGAA

value: CTCTCTAT

value: AGGCAGAA,CTCTCTAT

value: FB

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_G02)

description: scRNA-Seq

value: GGAGCTAC

value: CGTCTAAT

value: GGAGCTAC,CGTCTAAT

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_G01)

description: scRNA-Seq

value: ACTCGCTA

value: ACTCGCTA,CGTCTAAT

value: TH


title: Single P7 MB mouse dopaminergic neuron (TH_018_F12)

description: scRNA-Seq

value: ATCTCAGG

value: CTAAGCCT

value: ATCTCAGG,CTAAGCCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_F11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,CTAAGCCT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_F09)

description: scRNA-Seq

value: A

value: AAGAGGCA

value: AAGAGGCA,CTAAGCCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_F08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,CTAAGCCT

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_F05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,CTAAGCCT

value: FALSE


title: Single P7 MB mouse dopaminergic neuron (TH_018_F07)

description: scRNA-Seq

value: CTCTCTAC

value: CTCTCTAC,CTAAGCCT

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_F03)

description: scRNA-Seq

value: AGGCAGAA

value: CTAAGCCT

value: AGGCAGAA,CTAAGCCT

value: TH


title: Single P7 MB mouse dopaminergic neuron (TH_018_F01)

description: scRNA-Seq

value: TAAGGCGA

value: TAAGGCGA,CTAAGCCT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_F02)

description: scRNA-Seq

value: A

value: CGTACTAG

value: CGTACTAG,CTAAGCCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_E07)

description: scRNA-Seq

value: C

value: CTATTAAG

value: CTCTCTAC,CTATTAAG

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_E11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,CTATTAAG


title: MO520-1

city: Minneapolis

first: Nuri

middle: Alpay

last: Temiz

state: MN

address: 2231 6th St SE

department: Masonic Cancer Center

institute: University of Minnesota

data_processing:
Initial QC performed using FastQC v 0.11.2
Tophat v 2.0.13 was used to align samples
Cufflinks v 2.2.1 was used to generate abundances and fpkm values with max-bundle-frans <10000000> and masked genes with length <200
Supplementary_files_format_and_content: matrix of fpkm values per sample

source_name: osteosarcoma

extract_protocol:
total RNA was extracted using Thermo Fisher TotalRNA kit
TruSeq RNA v2
average insert size of 200 selected

tag: strain

value: Sleeping Beauty-p53 Dominant Negative

tag: tissue

value: osteosarcoma

tag: tumor type

value: primary


title: Single P7 MB mouse dopaminergic neuron (TH_018_E10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,CTATTAAG

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_E09)

description: scRNA-Seq

value: AAGAGGCA

value: AAGAGGCA,CTATTAAG

value: TH


title: Single P7 MB mouse dopaminergic neuron (TH_018_E08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,CTATTAAG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_E06)

description: scRNA-Seq

value: C

value: TAGGCATG

value: CTATTAAG

value: TAGGCATG,CTATTAAG


title: Single P7 MB mouse dopaminergic neuron (TH_018_E05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,CTATTAAG

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_D12)

description: scRNA-Seq

value: B

value: TCGACGTC

value: ACTGCATA

value: TCGACGTC,ACTGCATA

value: FALSE


title: Single P7 MB mouse dopaminergic neuron (TH_018_E01)

description: scRNA-Seq

value: TAAGGCGA

value: TAAGGCGA,CTATTAAG

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_E03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,CTATTAAG

value: TH


title: Single P7 MB mouse dopaminergic neuron (TH_018_E02)

description: scRNA-Seq

value: C

value: CGTACTAG

value: CGTACTAG,CTATTAAG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_E04)

description: scRNA-Seq

value: TCCTGAGC

value: CTATTAAG

value: TCCTGAGC,CTATTAAG


title: Single P7 MB mouse dopaminergic neuron (TH_018_D11)

description: scRNA-Seq

value: B

value: TGCAGCTA

value: TGCAGCTA,ACTGCATA

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_D08)

description: scRNA-Seq

value: ACTGAGCG

value: ACTGCATA

value: ACTGAGCG,ACTGCATA

value: FALSE


title: Single P7 MB mouse dopaminergic neuron (TH_018_F10)

description: scRNA-Seq

value: A

value: GTAGAGGA

value: CTAAGCCT

value: GTAGAGGA,CTAAGCCT

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_D10)

description: scRNA-Seq

value: CGATCAGT

value: CGATCAGT,ACTGCATA

value: TH

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_F04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,CTAAGCCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_D09)

description: scRNA-Seq

value: B

value: CCTAAGAC

value: CCTAAGAC,ACTGCATA


title: Single P7 MB mouse dopaminergic neuron (TH_018_F06)

description: scRNA-Seq

value: TAGGCATG

value: TAGGCATG,CTAAGCCT

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_E12)

description: scRNA-Seq

value: C

value: ATCTCAGG

value: CTATTAAG

value: ATCTCAGG,CTATTAAG


title: Single P7 MB mouse dopaminergic neuron (TH_018_D05)

description: scRNA-Seq

value: TACGCTGC

value: ACTGCATA

value: TACGCTGC,ACTGCATA

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_D03)

description: scRNA-Seq

value: GCGTAGTA

value: GCGTAGTA,ACTGCATA

value: TH

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_D02)

description: scRNA-Seq

value: B

value: GGAGCTAC

value: GGAGCTAC,ACTGCATA


title: Single P7 MB mouse dopaminergic neuron (TH_018_D01)

description: scRNA-Seq

value: ACTCGCTA

value: ACTCGCTA,ACTGCATA


title: Single P7 MB mouse dopaminergic neuron (TH_018_C12)

description: scRNA-Seq

value: A

value: GTAAGGAG

value: ATCTCAGG,GTAAGGAG

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_C10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,GTAAGGAG


title: Single P7 MB mouse dopaminergic neuron (TH_018_C11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,GTAAGGAG


title: Single P7 MB mouse dopaminergic neuron (TH_018_C08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,GTAAGGAG

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_C04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,GTAAGGAG

value: TH

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_C06)

description: scRNA-Seq

value: TAGGCATG

value: TAGGCATG,GTAAGGAG


title: Single P7 MB mouse dopaminergic neuron (TH_018_C05)

description: scRNA-Seq

value: A

value: GGACTCCT

value: GGACTCCT,GTAAGGAG

value: FALSE


title: Single P7 MB mouse dopaminergic neuron (TH_018_C03)

description: scRNA-Seq

value: AGGCAGAA

value: GTAAGGAG

value: AGGCAGAA,GTAAGGAG

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_D07)

description: scRNA-Seq

value: B

value: TAGCGCTC

value: ACTGCATA

value: TAGCGCTC,ACTGCATA


title: Single P7 MB mouse dopaminergic neuron (TH_018_D06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,ACTGCATA

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_C01)

description: scRNA-Seq

value: TAAGGCGA

value: TAAGGCGA,GTAAGGAG

value: TH

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_B12)

description: scRNA-Seq

value: C

value: ATCTCAGG

value: TTCTAGCT

value: ATCTCAGG,TTCTAGCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_B10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,TTCTAGCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_B11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,TTCTAGCT

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_B09)

description: scRNA-Seq

value: AAGAGGCA

value: AAGAGGCA,TTCTAGCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_C02)

description: scRNA-Seq

value: A

value: CGTACTAG

value: GTAAGGAG

value: CGTACTAG,GTAAGGAG


title: Single P7 MB mouse dopaminergic neuron (TH_018_B07)

description: scRNA-Seq

value: CTCTCTAC

value: CTCTCTAC,TTCTAGCT

value: TH

value: MB

value: FALSE


title: Single P7 MB mouse dopaminergic neuron (TH_018_B06)

description: scRNA-Seq

value: C

value: TAGGCATG

value: TTCTAGCT

value: TAGGCATG,TTCTAGCT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_B03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,TTCTAGCT

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_B05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,TTCTAGCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_B01)

description: scRNA-Seq

value: TAAGGCGA

value: TAAGGCGA,TTCTAGCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_B02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,TTCTAGCT


title: Single P7 MB mouse dopaminergic neuron (TH_018_B04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,TTCTAGCT

value: TH


title: Single P7 MB mouse dopaminergic neuron (TH_018_C07)

description: scRNA-Seq

value: A

value: CTCTCTAC

value: GTAAGGAG

value: CTCTCTAC,GTAAGGAG

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_A10)

description: scRNA-Seq

value: B

value: CGATCAGT

value: CTCTCTAT

value: CGATCAGT,CTCTCTAT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_A07)

description: scRNA-Seq

value: TAGCGCTC

value: TAGCGCTC,CTCTCTAT

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_A12)

description: scRNA-Seq

value: TCGACGTC

value: TCGACGTC,CTCTCTAT


title: Single P7 MB mouse dopaminergic neuron (TH_018_C09)

description: scRNA-Seq

value: AAGAGGCA

value: AAGAGGCA,GTAAGGAG


title: Single P7 MB mouse dopaminergic neuron (TH_018_A06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,CTCTCTAT

value: TH


title: Single P7 MB mouse dopaminergic neuron (TH_018_A05)

description: scRNA-Seq

value: TACGCTGC

value: TACGCTGC,CTCTCTAT

value: FALSE


title: Single P7 MB mouse dopaminergic neuron (TH_018_A09)

description: scRNA-Seq

value: B

value: CCTAAGAC

value: CCTAAGAC,CTCTCTAT

value: MB


title: Single P7 MB mouse dopaminergic neuron (TH_018_B08)

description: scRNA-Seq

value: C

value: CGAGGCTG

value: TTCTAGCT

value: CGAGGCTG,TTCTAGCT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_A03)

description: scRNA-Seq

value: GCGTAGTA

value: CTCTCTAT

value: GCGTAGTA,CTCTCTAT

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_A04)

description: scRNA-Seq

value: CGGAGCCT

value: CGGAGCCT,CTCTCTAT

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_H11)

description: scRNA-Seq

source_name: Single P7 OB mouse Th-eGFP+ sorted dopaminergic neuron

value: A

value: GCTCATGA

value: TCTCTCCG

value: GCTCATGA,TCTCTCCG

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_H12)

description: scRNA-Seq

value: ATCTCAGG

value: ATCTCAGG,TCTCTCCG


title: Single P7 OB mouse dopaminergic neuron (TH_016_H08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,TCTCTCCG


title: Single P7 MB mouse dopaminergic neuron (TH_018_A02)

description: scRNA-Seq

value: B

value: GGAGCTAC

value: GGAGCTAC,CTCTCTAT

value: MB

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 MB mouse dopaminergic neuron (TH_018_A11)

description: scRNA-Seq

value: TGCAGCTA

value: CTCTCTAT

value: TGCAGCTA,CTCTCTAT

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_H06)

description: scRNA-Seq

value: A

value: TAGGCATG

value: TAGGCATG,TCTCTCCG

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_H09)

description: scRNA-Seq

value: AAGAGGCA

value: TCTCTCCG

value: AAGAGGCA,TCTCTCCG

value: OB

value: TRUE


title: Single P7 MB mouse dopaminergic neuron (TH_018_A01)

description: scRNA-Seq

value: B

value: ACTCGCTA

value: ACTCGCTA,CTCTCTAT


title: Single P7 OB mouse dopaminergic neuron (TH_016_H04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,TCTCTCCG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 OB mouse dopaminergic neuron (TH_016_H10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,TCTCTCCG


title: Single P7 OB mouse dopaminergic neuron (TH_016_H02)

description: scRNA-Seq

value: A

value: CGTACTAG

value: CGTACTAG,TCTCTCCG


title: Single P7 OB mouse dopaminergic neuron (TH_016_H03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,TCTCTCCG

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_H07)

description: scRNA-Seq

value: CTCTCTAC

value: TCTCTCCG

value: CTCTCTAC,TCTCTCCG

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_H05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,TCTCTCCG

value: OB

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_G12)

description: scRNA-Seq

value: C

value: ATCTCAGG

value: GAGCCTTA

value: ATCTCAGG,GAGCCTTA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 OB mouse dopaminergic neuron (TH_016_G11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,GAGCCTTA


title: Single P7 MB mouse dopaminergic neuron (TH_018_A08)

description: scRNA-Seq

value: B

value: ACTGAGCG

value: CTCTCTAT

value: ACTGAGCG,CTCTCTAT

value: MB


title: Single P7 OB mouse dopaminergic neuron (TH_016_G10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,GAGCCTTA

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_G09)

description: scRNA-Seq

value: AAGAGGCA

value: AAGAGGCA,GAGCCTTA

value: OB

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_H01)

description: scRNA-Seq

value: A

value: TAAGGCGA

value: TCTCTCCG

value: TAAGGCGA,TCTCTCCG


title: Single P7 OB mouse dopaminergic neuron (TH_016_G07)

description: scRNA-Seq

value: C

value: CTCTCTAC

value: GAGCCTTA

value: CTCTCTAC,GAGCCTTA

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_G04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,GAGCCTTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_G05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,GAGCCTTA

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_G03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,GAGCCTTA

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_G06)

description: scRNA-Seq

value: TAGGCATG

value: TAGGCATG,GAGCCTTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_G02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,GAGCCTTA

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_G01)

description: scRNA-Seq

value: C

value: TAAGGCGA

value: GAGCCTTA

value: TAAGGCGA,GAGCCTTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_F12)

description: scRNA-Seq

value: B

value: TCGACGTC

value: CTAAGCCT

value: TCGACGTC,CTAAGCCT

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_F11)

description: scRNA-Seq

value: TGCAGCTA

value: TGCAGCTA,CTAAGCCT

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_F09)

description: scRNA-Seq

value: CCTAAGAC

value: CCTAAGAC,CTAAGCCT

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_F08)

description: scRNA-Seq

value: ACTGAGCG

value: ACTGAGCG,CTAAGCCT

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_F10)

description: scRNA-Seq

value: CGATCAGT

value: CGATCAGT,CTAAGCCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_F01)

description: scRNA-Seq

value: B

value: ACTCGCTA

value: ACTCGCTA,CTAAGCCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_F02)

description: scRNA-Seq

value: GGAGCTAC

value: CTAAGCCT

value: GGAGCTAC,CTAAGCCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_F07)

description: scRNA-Seq

value: TAGCGCTC

value: TAGCGCTC,CTAAGCCT

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_F04)

description: scRNA-Seq

value: CGGAGCCT

value: CGGAGCCT,CTAAGCCT

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_F06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,CTAAGCCT

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_F05)

description: scRNA-Seq

value: TACGCTGC

value: TACGCTGC,CTAAGCCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_E12)

description: scRNA-Seq

value: A

value: ATCTCAGG

value: AAGGAGTA

value: ATCTCAGG,AAGGAGTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_E11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,AAGGAGTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_G08)

description: scRNA-Seq

value: C

value: CGAGGCTG

value: GAGCCTTA

value: CGAGGCTG,GAGCCTTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_E08)

description: scRNA-Seq

value: CGAGGCTG,AAGGAGTA

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_E10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,AAGGAGTA

value: TH

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_F03)

description: scRNA-Seq

value: B

value: GCGTAGTA

value: CTAAGCCT

value: GCGTAGTA,CTAAGCCT

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_E06)

description: scRNA-Seq

value: A

value: TAGGCATG

value: AAGGAGTA

value: TAGGCATG,AAGGAGTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_E05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,AAGGAGTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_E09)

description: scRNA-Seq

value: AAGAGGCA

value: AAGAGGCA,AAGGAGTA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 OB mouse dopaminergic neuron (TH_016_E02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,AAGGAGTA

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_E04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,AAGGAGTA

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_E03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,AAGGAGTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_D09)

description: scRNA-Seq

value: C

value: GCGTAAGA

value: AAGAGGCA,GCGTAAGA

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_D12)

description: scRNA-Seq

value: ATCTCAGG

value: ATCTCAGG,GCGTAAGA


title: Single P7 OB mouse dopaminergic neuron (TH_016_D08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,GCGTAAGA


title: Single P7 OB mouse dopaminergic neuron (TH_016_D10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,GCGTAAGA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 OB mouse dopaminergic neuron (TH_016_D07)

description: scRNA-Seq

value: CTCTCTAC

value: CTCTCTAC,GCGTAAGA

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_E01)

description: scRNA-Seq

value: A

value: TAAGGCGA

value: AAGGAGTA

value: TAAGGCGA,AAGGAGTA

value: TH

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_D06)

description: scRNA-Seq

value: C

value: TAGGCATG

value: GCGTAAGA

value: TAGGCATG,GCGTAAGA

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_E07)

description: scRNA-Seq

value: CTCTCTAC,AAGGAGTA


title: Single P7 OB mouse dopaminergic neuron (TH_016_D05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,GCGTAAGA


title: Single P7 OB mouse dopaminergic neuron (TH_016_D03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,GCGTAAGA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 OB mouse dopaminergic neuron (TH_016_C12)

description: scRNA-Seq

value: B

value: TCGACGTC

value: GTAAGGAG

value: TCGACGTC,GTAAGGAG


title: Single P7 OB mouse dopaminergic neuron (TH_016_D02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,GCGTAAGA

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_D01)

description: scRNA-Seq

value: C

value: TAAGGCGA

value: TAAGGCGA,GCGTAAGA

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_C09)

description: scRNA-Seq

value: CCTAAGAC

value: CCTAAGAC,GTAAGGAG

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_C08)

description: scRNA-Seq

value: ACTGAGCG

value: ACTGAGCG,GTAAGGAG


title: Single P7 OB mouse dopaminergic neuron (TH_016_C10)

description: scRNA-Seq

value: CGATCAGT

value: CGATCAGT,GTAAGGAG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 OB mouse dopaminergic neuron (TH_016_C07)

description: scRNA-Seq

value: B

value: TAGCGCTC

value: GTAAGGAG

value: TAGCGCTC,GTAAGGAG


title: Single P7 OB mouse dopaminergic neuron (TH_016_D11)

description: scRNA-Seq

value: GCTCATGA

value: GCGTAAGA

value: GCTCATGA,GCGTAAGA

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_C01)

description: scRNA-Seq

value: ACTCGCTA

value: ACTCGCTA,GTAAGGAG

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_B12)

description: scRNA-Seq

value: A

value: ATCTCAGG

value: TATCCTCT

value: ATCTCAGG,TATCCTCT

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_C02)

description: scRNA-Seq

value: GGAGCTAC

value: GGAGCTAC,GTAAGGAG

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_C03)

description: scRNA-Seq

value: B

value: GCGTAGTA

value: GTAAGGAG

value: GCGTAGTA,GTAAGGAG


title: Single P7 OB mouse dopaminergic neuron (TH_016_C06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,GTAAGGAG

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_C05)

description: scRNA-Seq

value: TACGCTGC

value: TACGCTGC,GTAAGGAG


title: Single P7 OB mouse dopaminergic neuron (TH_016_B11)

description: scRNA-Seq

value: A

value: GCTCATGA

value: GCTCATGA,TATCCTCT

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_C04)

description: scRNA-Seq

value: CGGAGCCT

value: CGGAGCCT,GTAAGGAG

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_B08)

description: scRNA-Seq

value: CGAGGCTG

value: TATCCTCT

value: CGAGGCTG,TATCCTCT

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_B05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,TATCCTCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_B03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,TATCCTCT

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_B06)

description: scRNA-Seq

value: A

value: TAGGCATG

value: TAGGCATG,TATCCTCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_B02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,TATCCTCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_B07)

description: scRNA-Seq

value: CTCTCTAC

value: CTCTCTAC,TATCCTCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_B01)

description: scRNA-Seq

value: TAAGGCGA

value: TAAGGCGA,TATCCTCT

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_A12)

description: scRNA-Seq

value: C

value: ATCTCAGG

value: TCGACTAG

value: ATCTCAGG,TCGACTAG

value: Th-eGFP+ sorted dopaminergic neuron

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_C11)

description: scRNA-Seq

value: B

value: TGCAGCTA

value: GTAAGGAG

value: TGCAGCTA,GTAAGGAG

value: TH

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_B09)

description: scRNA-Seq

value: A

value: AAGAGGCA

value: TATCCTCT

value: AAGAGGCA,TATCCTCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_A10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,TCGACTAG

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_A09)

description: scRNA-Seq

value: C

value: TCGACTAG

value: AAGAGGCA,TCGACTAG


title: Single P7 OB mouse dopaminergic neuron (TH_016_A11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,TCGACTAG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 OB mouse dopaminergic neuron (TH_016_A08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,TCGACTAG


title: Single P7 OB mouse dopaminergic neuron (TH_016_A07)

description: scRNA-Seq

value: CTCTCTAC

value: CTCTCTAC,TCGACTAG

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_A04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,TCGACTAG

value: TRUE


title: Single P7 OB mouse dopaminergic neuron (TH_016_B10)

description: scRNA-Seq

value: A

value: GTAGAGGA

value: TATCCTCT

value: GTAGAGGA,TATCCTCT


title: Single P7 OB mouse dopaminergic neuron (TH_016_A05)

description: scRNA-Seq

value: C

value: GGACTCCT

value: TCGACTAG

value: GGACTCCT,TCGACTAG

value: OB


title: Single P7 OB mouse dopaminergic neuron (TH_016_A02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,TCGACTAG

value: Th-eGFP+ sorted dopaminergic neuron

value: FALSE


title: Single P7 OB mouse dopaminergic neuron (TH_016_B04)

description: scRNA-Seq

value: TCCTGAGC,TATCCTCT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H07)

description: scRNA-Seq

source_name: Single E15.5 MB mouse Th-eGFP+ sorted dopaminergic neuron

value: B

value: TAGCGCTC

value: TCTCTCCG

value: TAGCGCTC,TCTCTCCG

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H11)

description: scRNA-Seq

value: TGCAGCTA

value: TGCAGCTA,TCTCTCCG

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H12)

description: scRNA-Seq

value: A

value: ATCTCAGG

value: ATCTCAGG,TCTCTCCG


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,TCTCTCCG


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,TCTCTCCG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single P7 OB mouse dopaminergic neuron (TH_016_A01)

description: scRNA-Seq

value: C

value: TAAGGCGA

value: TCGACTAG

value: TAAGGCGA,TCGACTAG

value: TH

value: OB

value: FALSE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H03)

description: scRNA-Seq

value: B

value: GCGTAGTA

value: TCTCTCCG

value: GCGTAGTA,TCTCTCCG

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H02)

description: scRNA-Seq

value: A

value: CGTACTAG

value: CGTACTAG,TCTCTCCG

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H05)

description: scRNA-Seq

value: TACGCTGC

value: TACGCTGC,TCTCTCCG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H01)

description: scRNA-Seq

value: ACTCGCTA

value: ACTCGCTA,TCTCTCCG


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G09)

description: scRNA-Seq

value: CCTAAGAC

value: CGTCTAAT

value: CCTAAGAC,CGTCTAAT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H09)

description: scRNA-Seq

value: B

value: CCTAAGAC,TCTCTCCG


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,CGTCTAAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G10)

description: scRNA-Seq

value: A

value: GTAGAGGA

value: GTAGAGGA,CGTCTAAT

value: MB


title: Single P7 OB mouse dopaminergic neuron (TH_016_A06)

description: scRNA-Seq

value: C

value: TAGGCATG

value: TCGACTAG

value: TAGGCATG,TCGACTAG

value: OB

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G11)

description: scRNA-Seq

value: TGCAGCTA

value: CGTCTAAT

value: TGCAGCTA,CGTCTAAT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,CGTCTAAT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G05)

description: scRNA-Seq

value: B

value: TACGCTGC

value: TACGCTGC,CGTCTAAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F11)

description: scRNA-Seq

value: CTAAGCCT

value: TGCAGCTA,CTAAGCCT

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G01)

description: scRNA-Seq

value: ACTCGCTA

value: ACTCGCTA,CGTCTAAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G07)

description: scRNA-Seq

value: TAGCGCTC

value: TAGCGCTC,CGTCTAAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G03)

description: scRNA-Seq

value: GCGTAGTA

value: GCGTAGTA,CGTCTAAT

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F10)

description: scRNA-Seq

value: A

value: GTAGAGGA

value: GTAGAGGA,CTAAGCCT

value: Th-eGFP+ sorted dopaminergic neuron

value: FALSE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G02)

description: scRNA-Seq

value: CGTACTAG

value: CGTCTAAT

value: CGTACTAG,CGTCTAAT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F12)

description: scRNA-Seq

value: ATCTCAGG

value: CTAAGCCT

value: ATCTCAGG,CTAAGCCT

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,CTAAGCCT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F09)

description: scRNA-Seq

value: B

value: CCTAAGAC

value: CCTAAGAC,CTAAGCCT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F07)

description: scRNA-Seq

value: TAGCGCTC

value: TAGCGCTC,CTAAGCCT

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F06)

description: scRNA-Seq

value: A

value: TAGGCATG

value: TAGGCATG,CTAAGCCT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F04)

description: scRNA-Seq

value: TCCTGAGC

value: TCCTGAGC,CTAAGCCT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F03)

description: scRNA-Seq

value: GCGTAGTA

value: CTAAGCCT

value: GCGTAGTA,CTAAGCCT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,CTAAGCCT

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F01)

description: scRNA-Seq

value: B

value: ACTCGCTA

value: ACTCGCTA,CTAAGCCT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E11)

description: scRNA-Seq

value: TGCAGCTA

value: AAGGAGTA

value: TGCAGCTA,AAGGAGTA

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E10)

description: scRNA-Seq

value: A

value: GTAGAGGA

value: GTAGAGGA,AAGGAGTA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_F05)

description: scRNA-Seq

value: TACGCTGC

value: TACGCTGC,CTAAGCCT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E07)

description: scRNA-Seq

value: TAGCGCTC

value: TAGCGCTC,AAGGAGTA


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,AAGGAGTA

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E09)

description: scRNA-Seq

value: B

value: CCTAAGAC

value: CCTAAGAC,AAGGAGTA


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E06)

description: scRNA-Seq

value: TAGGCATG

value: AAGGAGTA

value: TAGGCATG,AAGGAGTA


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E05)

description: scRNA-Seq

value: TACGCTGC,AAGGAGTA

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E03)

description: scRNA-Seq

value: GCGTAGTA

value: GCGTAGTA,AAGGAGTA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E04)

description: scRNA-Seq

value: A

value: TCCTGAGC

value: TCCTGAGC,AAGGAGTA

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E01)

description: scRNA-Seq

value: ACTCGCTA

value: ACTCGCTA,AAGGAGTA


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D11)

description: scRNA-Seq

value: B

value: TGCAGCTA

value: ACTGCATA

value: TGCAGCTA,ACTGCATA

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E02)

description: scRNA-Seq

value: CGTACTAG

value: AAGGAGTA

value: CGTACTAG,AAGGAGTA


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,ACTGCATA

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D06)

description: scRNA-Seq

value: A

value: TAGGCATG

value: TAGGCATG,ACTGCATA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D09)

description: scRNA-Seq

value: CCTAAGAC

value: CCTAAGAC,ACTGCATA

value: TH

value: FALSE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D08)

description: scRNA-Seq

value: CGAGGCTG

value: ACTGCATA

value: CGAGGCTG,ACTGCATA


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D07)

description: scRNA-Seq

value: B

value: TAGCGCTC

value: TAGCGCTC,ACTGCATA

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_E12)

description: scRNA-Seq

value: ATCTCAGG

value: AAGGAGTA

value: ATCTCAGG,AAGGAGTA


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D05)

description: scRNA-Seq

value: TACGCTGC

value: TACGCTGC,ACTGCATA

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D02)

description: scRNA-Seq

value: A

value: CGTACTAG

value: CGTACTAG,ACTGCATA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D03)

description: scRNA-Seq

value: GCGTAGTA

value: GCGTAGTA,ACTGCATA

value: TH


title: Single P7 OB mouse dopaminergic neuron (TH_016_A03)

description: scRNA-Seq

value: C

value: AGGCAGAA

value: TCGACTAG

value: AGGCAGAA,TCGACTAG

value: OB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C12)

description: scRNA-Seq

value: ATCTCAGG

value: GTAAGGAG

value: ATCTCAGG,GTAAGGAG

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D01)

description: scRNA-Seq

value: B

value: ACTCGCTA

value: ACTGCATA

value: ACTCGCTA,ACTGCATA

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C11)

description: scRNA-Seq

value: TGCAGCTA

value: TGCAGCTA,GTAAGGAG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H04)

description: scRNA-Seq

value: A

value: TCCTGAGC

value: TCTCTCCG

value: TCCTGAGC,TCTCTCCG

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,GTAAGGAG


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C09)

description: scRNA-Seq

value: CCTAAGAC

value: GTAAGGAG

value: CCTAAGAC,GTAAGGAG


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C08)

description: scRNA-Seq

value: CGAGGCTG

value: CGAGGCTG,GTAAGGAG

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C06)

description: scRNA-Seq

value: TAGGCATG

value: TAGGCATG,GTAAGGAG

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G06)

description: scRNA-Seq

value: CGTCTAAT

value: TAGGCATG,CGTCTAAT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C05)

description: scRNA-Seq

value: B

value: TACGCTGC

value: TACGCTGC,GTAAGGAG

value: FALSE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C04)

description: scRNA-Seq

value: A

value: TCCTGAGC

value: TCCTGAGC,GTAAGGAG

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C02)

description: scRNA-Seq

value: CGTACTAG

value: GTAAGGAG

value: CGTACTAG,GTAAGGAG


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B11)

description: scRNA-Seq

value: TGCAGCTA

value: TATCCTCT

value: TGCAGCTA,TATCCTCT

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C03)

description: scRNA-Seq

value: GCGTAGTA

value: GCGTAGTA,GTAAGGAG

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_D12)

description: scRNA-Seq

value: ATCTCAGG

value: ACTGCATA

value: ATCTCAGG,ACTGCATA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C01)

description: scRNA-Seq

value: B

value: ACTCGCTA

value: ACTCGCTA,GTAAGGAG


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B10)

description: scRNA-Seq

value: A

value: GTAGAGGA

value: GTAGAGGA,TATCCTCT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B07)

description: scRNA-Seq

value: TAGCGCTC

value: TATCCTCT

value: TAGCGCTC,TATCCTCT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B09)

description: scRNA-Seq

value: CCTAAGAC

value: CCTAAGAC,TATCCTCT

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B05)

description: scRNA-Seq

value: TACGCTGC

value: TACGCTGC,TATCCTCT

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_C07)

description: scRNA-Seq

value: GTAAGGAG

value: TAGCGCTC,GTAAGGAG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B12)

description: scRNA-Seq

value: ATCTCAGG

value: ATCTCAGG,TATCCTCT

value: FALSE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A11)

description: scRNA-Seq

value: B

value: TGCAGCTA

value: CTCTCTAT

value: TGCAGCTA,CTCTCTAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A12)

description: scRNA-Seq

value: A

value: ATCTCAGG,CTCTCTAT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B04)

description: scRNA-Seq

value: TCCTGAGC

value: TATCCTCT

value: TCCTGAGC,TATCCTCT

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,TATCCTCT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A10)

description: scRNA-Seq

value: GTAGAGGA

value: GTAGAGGA,CTCTCTAT

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A09)

description: scRNA-Seq

value: B

value: CCTAAGAC

value: CCTAAGAC,CTCTCTAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A08)

description: scRNA-Seq

value: CGAGGCTG

value: CTCTCTAT

value: CGAGGCTG,CTCTCTAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_G12)

description: scRNA-Seq

value: A

value: ATCTCAGG

value: CGTCTAAT

value: ATCTCAGG,CGTCTAAT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A06)

description: scRNA-Seq

value: TAGGCATG

value: TAGGCATG,CTCTCTAT

value: MB


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A07)

description: scRNA-Seq

value: TAGCGCTC

value: TAGCGCTC,CTCTCTAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A02)

description: scRNA-Seq

value: CGTACTAG

value: CGTACTAG,CTCTCTAT

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A05)

description: scRNA-Seq

value: B

value: TACGCTGC

value: TACGCTGC,CTCTCTAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B08)

description: scRNA-Seq

value: A

value: CGAGGCTG

value: TATCCTCT

value: CGAGGCTG,TATCCTCT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A04)

description: scRNA-Seq

value: TCCTGAGC

value: CTCTCTAT

value: TCCTGAGC,CTCTCTAT

value: TH


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A01)

description: scRNA-Seq

value: ACTCGCTA

value: ACTCGCTA,CTCTCTAT

value: MB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H10)

description: scRNA-Seq

source_name: Single E15.5 FB mouse Th-eGFP+ sorted dopaminergic neuron

value: CGATCAGT

value: TCTCTCCG

value: CGATCAGT,TCTCTCCG

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,TCTCTCCG

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H12)

description: scRNA-Seq

value: B

value: TCGACGTC

value: TCGACGTC,TCTCTCCG


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B01)

description: scRNA-Seq

value: TATCCTCT

value: ACTCGCTA,TATCCTCT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B03)

description: scRNA-Seq

value: GCGTAGTA

value: GCGTAGTA,TATCCTCT

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,TCTCTCCG


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H07)

description: scRNA-Seq

value: A

value: CTCTCTAC

value: TCTCTCCG

value: CTCTCTAC,TCTCTCCG


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,TCTCTCCG

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G12)

description: scRNA-Seq

value: B

value: CGTCTAAT

value: TCGACGTC,CGTCTAAT

value: Th-eGFP+ sorted dopaminergic neuron

value: FALSE


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_H06)

description: scRNA-Seq

value: TAGGCATG

value: TAGGCATG,TCTCTCCG

value: MB

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,TCTCTCCG

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H02)

description: scRNA-Seq

value: GGAGCTAC

value: TCTCTCCG

value: GGAGCTAC,TCTCTCCG


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H04)

description: scRNA-Seq

value: CGGAGCCT

value: CGGAGCCT,TCTCTCCG


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H01)

description: scRNA-Seq

value: A

value: TAAGGCGA

value: TAAGGCGA,TCTCTCCG

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G10)

description: scRNA-Seq

value: B

value: CGATCAGT

value: CGTCTAAT

value: CGATCAGT,CGTCTAAT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,CGTCTAAT

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G09)

description: scRNA-Seq

value: AAGAGGCA

value: AAGAGGCA,CGTCTAAT

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G07)

description: scRNA-Seq

value: CTCTCTAC

value: CTCTCTAC,CGTCTAAT


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_A03)

description: scRNA-Seq

value: GCGTAGTA

value: CTCTCTAT

value: GCGTAGTA,CTCTCTAT

value: MB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G08)

description: scRNA-Seq

value: B

value: ACTGAGCG

value: ACTGAGCG,CGTCTAAT

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G06)

description: scRNA-Seq

value: ATGCGCAG

value: CGTCTAAT

value: ATGCGCAG,CGTCTAAT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H09)

description: scRNA-Seq

value: A

value: AAGAGGCA

value: TCTCTCCG

value: AAGAGGCA,TCTCTCCG

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G04)

description: scRNA-Seq

value: CGGAGCCT

value: CGGAGCCT,CGTCTAAT

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,CGTCTAAT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_H08)

description: scRNA-Seq

value: B

value: ACTGAGCG

value: ACTGAGCG,TCTCTCCG


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G02)

description: scRNA-Seq

value: GGAGCTAC

value: GGAGCTAC,CGTCTAAT

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F12)

description: scRNA-Seq

value: TCGACGTC

value: CTAAGCCT

value: TCGACGTC,CTAAGCCT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F09)

description: scRNA-Seq

value: A

value: AAGAGGCA

value: AAGAGGCA,CTAAGCCT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F10)

description: scRNA-Seq

value: CGATCAGT

value: CGATCAGT,CTAAGCCT

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F04)

description: scRNA-Seq

value: CGGAGCCT

value: CGGAGCCT,CTAAGCCT

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F08)

description: scRNA-Seq

value: B

value: ACTGAGCG

value: ACTGAGCG,CTAAGCCT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F02)

description: scRNA-Seq

value: GGAGCTAC

value: GGAGCTAC,CTAAGCCT

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F07)

description: scRNA-Seq

value: CTCTCTAC

value: CTAAGCCT

value: CTCTCTAC,CTAAGCCT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F03)

description: scRNA-Seq

value: A

value: AGGCAGAA

value: AGGCAGAA,CTAAGCCT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F01)

description: scRNA-Seq

value: TAAGGCGA

value: TAAGGCGA,CTAAGCCT

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,CTAAGCCT

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E12)

description: scRNA-Seq

value: B

value: TCGACGTC

value: AAGGAGTA

value: TCGACGTC,AAGGAGTA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E09)

description: scRNA-Seq

value: AAGAGGCA

value: AAGAGGCA,AAGGAGTA

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E08)

description: scRNA-Seq

value: ACTGAGCG

value: ACTGAGCG,AAGGAGTA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E07)

description: scRNA-Seq

value: A

value: CTCTCTAC

value: CTCTCTAC,AAGGAGTA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G01)

description: scRNA-Seq

value: TAAGGCGA

value: CGTCTAAT

value: TAAGGCGA,CGTCTAAT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,AAGGAGTA

value: TH

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E11)

description: scRNA-Seq

value: GCTCATGA

value: AAGGAGTA

value: GCTCATGA,AAGGAGTA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E04)

description: scRNA-Seq

value: B

value: CGGAGCCT

value: CGGAGCCT,AAGGAGTA

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E03)

description: scRNA-Seq

value: A

value: AGGCAGAA

value: AGGCAGAA,AAGGAGTA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F11)

description: scRNA-Seq

value: CTAAGCCT

value: GCTCATGA,CTAAGCCT

value: FALSE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,AAGGAGTA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E02)

description: scRNA-Seq

value: GGAGCTAC

value: GGAGCTAC,AAGGAGTA

value: TH

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E01)

description: scRNA-Seq

value: TAAGGCGA

value: AAGGAGTA

value: TAAGGCGA,AAGGAGTA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_F05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,CTAAGCCT

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_D12)

description: scRNA-Seq

value: B

value: TCGACGTC

value: ACTGCATA

value: TCGACGTC,ACTGCATA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_D08)

description: scRNA-Seq

value: ACTGAGCG

value: ACTGAGCG,ACTGCATA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_D06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,ACTGCATA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_D11)

description: scRNA-Seq

value: A

value: GCTCATGA

value: GCTCATGA,ACTGCATA

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_D05)

description: scRNA-Seq

value: GGACTCCT,ACTGCATA

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_D07)

description: scRNA-Seq

value: CTCTCTAC

value: CTCTCTAC,ACTGCATA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_D03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,ACTGCATA

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_E10)

description: scRNA-Seq

value: B

value: CGATCAGT

value: AAGGAGTA

value: CGATCAGT,AAGGAGTA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_D01)

description: scRNA-Seq

value: TAAGGCGA

value: ACTGCATA

value: TAAGGCGA,ACTGCATA


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_D02)

description: scRNA-Seq

value: GGAGCTAC

value: GGAGCTAC,ACTGCATA

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C12)

description: scRNA-Seq

value: TCGACGTC

value: GTAAGGAG

value: TCGACGTC,GTAAGGAG

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C07)

description: scRNA-Seq

value: A

value: CTCTCTAC

value: CTCTCTAC,GTAAGGAG

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C08)

description: scRNA-Seq

value: B

value: ACTGAGCG

value: ACTGAGCG,GTAAGGAG

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,GTAAGGAG


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,GTAAGGAG

value: FALSE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C10)

description: scRNA-Seq

value: CGATCAGT

value: CGATCAGT,GTAAGGAG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C03)

description: scRNA-Seq

value: AGGCAGAA

value: GTAAGGAG

value: AGGCAGAA,GTAAGGAG

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C05)

description: scRNA-Seq

value: A

value: GGACTCCT

value: GGACTCCT,GTAAGGAG

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_G05)

description: scRNA-Seq

value: CGTCTAAT

value: GGACTCCT,CGTCTAAT

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C04)

description: scRNA-Seq

value: B

value: CGGAGCCT

value: CGGAGCCT,GTAAGGAG


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B12)

description: scRNA-Seq

value: TCGACGTC

value: TATCCTCT

value: TCGACGTC,TATCCTCT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C02)

description: scRNA-Seq

value: GGAGCTAC

value: GGAGCTAC,GTAAGGAG

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B10)

description: scRNA-Seq

value: CGATCAGT

value: CGATCAGT,TATCCTCT

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B11)

description: scRNA-Seq

value: A

value: GCTCATGA

value: GCTCATGA,TATCCTCT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B09)

description: scRNA-Seq

value: AAGAGGCA

value: AAGAGGCA,TATCCTCT

value: FALSE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B03)

description: scRNA-Seq

value: AGGCAGAA

value: AGGCAGAA,TATCCTCT

value: FB

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B07)

description: scRNA-Seq

value: CTCTCTAC

value: TATCCTCT

value: CTCTCTAC,TATCCTCT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B04)

description: scRNA-Seq

value: B

value: CGGAGCCT

value: CGGAGCCT,TATCCTCT

value: Th-eGFP+ sorted dopaminergic neuron


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A12)

description: scRNA-Seq

value: TCGACGTC

value: CTCTCTAT

value: TCGACGTC,CTCTCTAT

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B05)

description: scRNA-Seq

value: A

value: GGACTCCT

value: GGACTCCT,TATCCTCT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B06)

description: scRNA-Seq

value: ATGCGCAG

value: ATGCGCAG,TATCCTCT

value: FALSE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B02)

description: scRNA-Seq

value: GGAGCTAC

value: GGAGCTAC,TATCCTCT

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C09)

description: scRNA-Seq

value: AAGAGGCA

value: GTAAGGAG

value: AAGAGGCA,GTAAGGAG


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A11)

description: scRNA-Seq

value: GCTCATGA

value: GCTCATGA,CTCTCTAT

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A10)

description: scRNA-Seq

value: B

value: CGATCAGT

value: CTCTCTAT

value: CGATCAGT,CTCTCTAT

value: TH


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A09)

description: scRNA-Seq

value: A

value: AAGAGGCA,CTCTCTAT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_C01)

description: scRNA-Seq

value: TAAGGCGA

value: TAAGGCGA,GTAAGGAG


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A08)

description: scRNA-Seq

value: ACTGAGCG

value: ACTGAGCG,CTCTCTAT

value: FB


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A05)

description: scRNA-Seq

value: GGACTCCT

value: GGACTCCT,CTCTCTAT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A07)

description: scRNA-Seq

value: CTCTCTAC

value: CTCTCTAC,CTCTCTAT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B08)

description: scRNA-Seq

value: TATCCTCT

value: ACTGAGCG,TATCCTCT

value: Th-eGFP+ sorted dopaminergic neuron

value: TRUE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A01)

description: scRNA-Seq

value: CTCTCTAT

value: TAAGGCGA,CTCTCTAT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A03)

description: scRNA-Seq

value: A

value: AGGCAGAA

value: AGGCAGAA,CTCTCTAT

value: TH

value: FALSE


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A02)

description: scRNA-Seq

value: B

value: GGAGCTAC

value: GGAGCTAC,CTCTCTAT


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A04)

description: scRNA-Seq

value: CGGAGCCT

value: CGGAGCCT,CTCTCTAT

value: FB


title: FUS_P517L/P517L_1_small_RNA

city: Rome

first: Pietro

last: Laneve

state: RM

address: Viale Regina Elena 291

department: Center for Life Nano Science@Sapienza

country: Italy

institute: Istituto Italiano di Tecnologia

description:
small RNA
full_quantile_norm_counts_Small_RNA-Seq.tsv

data_processing:
Base-Calling with Casava.
Adapter sequences were removed using Trimmomatic software, using a simple clip threshold equal to 8.
After trimming, reads whose length was less thab 18 bp were discarded. Bowtie with --best and -v 0 switches was then used to align remaining reads to a sequence database composed of canonical microRNAs and their putative isoforms.
To estimate the expression of each mature microRNA, we used the number of reads mapping to its template isoforms calculated using the IsomiRage software. Poorly expressed miRNAs, defined as those not achieving one count per million in at least two samples, were filtered out. Full quantile normalization was then applied to raw read counts using the EDASeq R package; normalized read counts were supplied to EdgeR for differential expression analysis.
genome build: miRBase v21 mouse miRNAs and putative isoforms.
processed data files format and content: text file containing per sample mature miRNA full quantile normalized counts

source_name: Motoneurons Hb9::GFP positive

growth_protocol: Mantainance of mESCs is described in Wichterle et al 2008 (DOI: 10.1002/9780470151808.sc01h01s5)

extract_protocol:
Total RNA was extracted with the Quick RNA MiniPrep (Zymo Research)
TruSeq Small RNA Library Prep Kit

treatment_protocol: mESCs were differentiate in motoneurons as described in Wichterle et al. 2008 (DOI: 10.1002/9780470151808.sc01h01s5)

value: mESC-derived motoneurons

tag: genotype


title: FUS_P517L/P517L_2_small_RNA


title: FUS_KO_2_small_RNA

value: FUS-KO


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_B01)

description: scRNA-Seq

value: TAAGGCGA

value: TATCCTCT

value: TAAGGCGA,TATCCTCT

value: Th-eGFP+ sorted dopaminergic neuron


title: FUS_KO_1_small_RNA


title: FUS_WT_1_small_RNA

value: FUS-WT


title: FUS_WT_2_small_RNA


title: FUS_KO_3_re-analyzed

description:
total RNA
GSM2196609
fpkm_RNA-Seq.tsv

data_processing:
Base-Calling with Casava.
RNA-Seq reads were initially trimmed using the Trimmomatic software to remove adapter sequences and poor quality bases; the minimum read length after trimming was set to 30. After that, Bowtie 2 was used to align reads to a sequence database composed of rRNAs, tRNAs, snRNAs, snoRNAs and other non-coding species which resulted to be overrepresented according to FastQC software; reads mapping to these sequences were filtered out.
Mean and variance of inner distance distribution were estimated from aligned read pairs whose inner distance was within interval [Q1-2(Q3-Q1),Q3+2(Q3-Q1)] (Q1=first quartile, Q3=third quartile). TopHat2 was employed to align reads to GRCm38 mouse genome and Ensembl transcriptome using parameters -i 50 -r 36 --mate-std-dev 73 --library-type fr-firststrand. Samtools was used to filter off reads mapping to mitochondrial genome.
Gene-level and isoform-level expression estimation, as well as differential expression analysis, were performed using Cuffdiff 2 software. Each Ensembl gene was assigned a FPKM value equal to the sum of the FPKM values of its transcripts; this was done to disambiguate cases in which Cuffdiff merges two or more Ensembl genes because of their proximity.
genome build: GRCm38
processed data files format and content: text file containing per sample gene FPKMs

extract_protocol:
Total RNA was extracted with the Quick RNA MiniPrep (Zymo Research)
TruSeq Stranded Total RNA Library Prep Kit with Ribo-Zero treatment


title: FUS_KO_2_re-analyzed

description:
total RNA
GSM2196608
fpkm_RNA-Seq.tsv


title: FUS_P517L/P517L_2

description:
total RNA
fpkm_RNA-Seq.tsv


title: WT_3_re-analyzed

description:
total RNA
GSM2196606
fpkm_RNA-Seq.tsv


title: WT_2_re-analyzed

description:
total RNA
GSM2196605
fpkm_RNA-Seq.tsv


title: FUS_P517L/P517L_1

description:
total RNA
fpkm_RNA-Seq.tsv


title: WT_1_re-analyzed

description:
total RNA
GSM2196604
fpkm_RNA-Seq.tsv


title: PMA_1002_6

city: Vancouver

first: Erin

last: Gill

state: British Columbia

address: 2259 Lower Mall

country: Canada

institute: University of British Columbia

data_processing:
Base-calling and de-multiplexing were done using built-in software on the Illumina HiSeq 2500
fastq file quality control was performed using FastQC v0.11.5 and MultiQC v0.8.dev0
fastq files were aligned to the mouse genome using STAR v2.5
read count tables were generated from bam files using htseq-count v.2.5
Genome_build: Ensebml GRCm38
Supplementary_files_format_and_content: tab delimited files containing uniquely mapped reads per gene for each sample

source_name: ear tissue

extract_protocol:
RNA was extracted using an Rneasy Mini Kit (Qiagen) and polyA RNA was purified using a Magnetic mRNA Isolation Kit (New England Biolabs)
cDNA libraries were constructed for sequencing using a KAPA Stranded Total RNA Kit (Kapa Biosystems)

tag: treatment

tag: Sex

value: female

value: 5 weeks

value: ear

tag: mouse model

value: phorbol 12-myristate 13-acetate (PMA)-induced mouse ear inflammation model


title: Single E15.5 FB mouse dopaminergic neuron (TH_014_A06)

description: scRNA-Seq

value: B

value: ATGCGCAG

value: CTCTCTAT

value: ATGCGCAG,CTCTCTAT

value: TH

value: TRUE


title: FUS_KO_1_re-analyzed

description:
total RNA
GSM2196607
fpkm_RNA-Seq.tsv

value: mESC-derived motoneurons


title: PMA_1002_5


title: PMA_1002_4


title: PMA_1002_3


title: PMA_ethanol_4


title: PMA_1002_2


title: PMA_1002_1


title: PMA_ethanol_3


title: Control_2

value: control


title: PMA_ethanol_1


title: Control_3


title: Control_5


title: Control_1


title: MCF10A_C_rep3

city: Tempe

first: Karmella

last: Haynes

state: Arizona

address: 427 E Tyler Mall

department: Biological and Health Systems Engineering

institute: Arizona State University

description:
Sample 27
MCF10A untreated replicate 3
Control used for comparison of basal expression levels in untreated control cells
controls_gene_exp.diff, ALL_gene_exp.diff, MCF10A_BT474_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, MCF10A_BT549_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

data_processing:
Two raw read files were produced per sample
Raw sequence data (fastq) was analyzed with FastQC (fastqc verision 0.11.3 )
TrimmomaticSE was used to remove low-quality reads and adapters
Splice junctions were mapped using STAR ( version 2.5.2b)  to generate BAM files
Flow cell samples were merged together using BAMtools (version 2.4.0)
Cuffdiff (version cufflinks verision 2.2.1) was used to determine relative abundance for single trial RNA-seq. The BAM output files, ".sort.markdup.readgrps.merge (bam)," and GENCODE gencode.v25.chr_patch_hapl_scaff.annotation.gtf  file were used as input for Cuffdiff with the default parameters: Library normalization method = classic-fpkm, Dispersion estimation method = blind, False Discovery Rate = 0.05, Min Alignment Count = 10, Use multi-read correct = True, Perform Bias Correction / Include Read Group Datasets / Include Count Based output files = No, apply length correction = cufflinks effective length correction, Average Fragment Length = 200, Fragment Length Standard Deviation = 80, Set Advanced Cuffdiff parameters? / Job Resource Parameters = No
cummerbund (version 0.1.3) was used to generate Jesen Shannon Distances and ggplots2 (verison 2.2.1 )was used to make heatmaps
Genome_build: Human March. 2016 (GRCh38.p7)
Supplementary_files_format_and_content: Relative abundance: tab-delimited txt files with the following columns: test_id, gene_id, gene, locus, sample_1, sample_2, status, value_1 (FPKM), value_2 (FPKM), log2(fold_change) test_stat, p_value, q_value, significant.

source_name: MCF10A untreated

growth_protocol: Cells were grown up to ~5.0E5 cells in 6-well plates at 37 deg. C in a 5% CO2 humidified incubator in the following media supplemented with 10% Tet-free FBS and 1% penicillin/ streptomycin: BT474 in Hybri-Care supplemented with 1.5 g/L sodium bicarbonate, BT549 in RPMI-1640 supplemented with 0.0008 mg/mL insulin, MCF7 in EMEM supplemented with 0.01 mg/mL insulin, MCF10A in MEGM BulletKit with all provided supplements except GA-1000. Pen/strep was omitted during transient transfections (to reduce toxicity) and replaced after 18 hours.

extract_protocol:
Total messenger RNA was extracted from ~90% confluent cells (~1-2x106). Cells were treated with Trypsin to remove them from the wells, collected into tubes, pelleted by centrifugation at 200 xg for 5 min. at room temperature, separated from the supernatant, and lysed in 500 μl TRIzol. TRIzol cell lysates were extracted with 100 μl chloroform and centrifuged at 12,000 xg for 15 min. at 4°C. RNA was column-purified from the aqueous phase (Qiagen RNeasy Mini kit 74104).
50 ng of total RNA was used to prepare cDNA via single primer isothermal amplification using the Ovation RNA-Seq System (Nugen 7102-A01) and automated on the Apollo 324 liquid handler (Wafergen). cDNA was sheared to approximately 300 bp fragments using the Covaris M220 ultrasonicator. Libraries were generated using Kapa Biosystem’s library preparation kit (KK8201). In separate reactions, fragments from each replicate sample were end-repaired, A-tailed, and ligated to index and adapter fragments (Bioo, 520999). The adapter-ligated molecules were cleaned using AMPure beads (Agencourt Bioscience/Beckman Coulter, A63883), and amplified with Kapa’s HIFI enzyme. The library was analyzed on an Agilent Bioanalyzer, and quantified by qPCR (KAPA Library Quantification Kit, KK4835) before multiplex pooling and sequencing on a Hiseq 2000 platform (Illumina) at the ASU CLAS Genomics Core facility.

treatment_protocol: Samples 1-6, 9-14, and 17-22 (transfections): DNA/Lipofectamine complexes contained 2 μg of plasmid DNA, 7.5 μl of Lipofectamine LTX (Invitrogen), 2.5 PLUS reagent, and 570 µl OptiMEM. Transfected cells were grown in pen/strep-free growth medium for 18 hrs. The transfection medium was replaced with fresh, pen/strep-supplemented medium and cells were grown for up to 72 hours). Controls (samples 7-8, 15-16, 23-24) were treated with vehicle only (Lipofectamine, PLUS, OptiMEM). Controls (samples 25-27) were not given any treatment.

tag: cell line

value: MCF 10A (ATCC CRL-10317)

tag: protein

value: PcTF

value: control (untreated)

tag: time


title: FUS_P517L/P517L_3

description:
total RNA
fpkm_RNA-Seq.tsv


title: MCF10A_C_rep1

description:
Sample 25
MCF10A untreated replicate 1
Control used for comparison of basal expression levels in untreated control cells
controls_gene_exp.diff, ALL_gene_exp.diff, MCF10A_BT474_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, MCF10A_BT549_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: MCF10A_C_rep2

description:
Sample 26
MCF10A untreated replicate 2
Control used for comparison of basal expression levels in untreated control cells
controls_gene_exp.diff, ALL_gene_exp.diff, MCF10A_BT474_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, MCF10A_BT549_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: PMA_ethanol_2


title: MCF7_C_rep1

description:
Sample 23
MCF7 untreated replicate 1
Control used to compute relative abundance of transcripts in MCF7_24, MCF7_48, MCF7_72
MCF7_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, ALL_gene_exp.diff, controls_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: MCF7 untreated

value: MCF7 (ATCC HTB-22)

value: control (vehicle only)


title: MCF7_C_rep2

description:
Sample 24
MCF7 untreated replicate 2
Control used to compute relative abundance of transcripts in MCF7_24, MCF7_48, MCF7_72
MCF7_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, ALL_gene_exp.diff, controls_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: MCF7_72hrs_rep2

description:
Sample 22
MCF7 72 hrs PcTF replicate 2
Treated cell used to compute relative abundance of transcripts in MCF7_72
MCF7_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, ALL_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: MCF7 72 hrs PcTF

value: transfection

value: 72 hrs


title: BT549_C_rep2

description:
Sample 16
BT549 untreated replicate 2
Control used to compute relative abundance of transcripts in BT549_24, BT549_48, BT549_72
BT549_gene_exp.diff, ALL_gene_exp.diff, controls_gene_exp.diff, MCF10A_BT549_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: BT549 untreated


title: MCF7_24hrs_rep1

description:
Sample 17
MCF7 24 hrs PcTF replicate 1
Treated cell used to compute relative abundance of transcripts in MCF7_24
MCF7_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, ALL_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: MCF7 24 hrs PcTF

value: 24 hrs


title: MCF7_48hrs_rep1

description:
Sample 19
MCF7 48 hrs PcTF replicate 1
Treated cell used to compute relative abundance of transcripts in MCF7_48
MCF7_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, ALL_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: MCF7 48 hrs PcTF

value: 48 hrs


title: MCF7_24hrs_rep2

description:
Sample 18
MCF7 24 hrs PcTF replicate 2
Treated cell used to compute relative abundance of transcripts in MCF7_24
MCF7_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, ALL_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: MCF7_48hrs_rep2

description:
Sample 20
MCF7 48 hrs PcTF replicate 2
Treated cell used to compute relative abundance of transcripts in MCF7_48
MCF7_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, ALL_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: MCF7_72hrs_rep1

description:
Sample 21
MCF7 72 hrs PcTF replicate 1
Treated cell used to compute relative abundance of transcripts in MCF7_72
MCF7_gene_exp.diff, MCF10A_MCF7_gene_exp.diff, ALL_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: BT549_C_rep1

description:
Sample 15
BT549 untreated replicate 1
Control used to compute relative abundance of transcripts in BT549_24, BT549_48, BT549_72
BT549_gene_exp.diff, ALL_gene_exp.diff, controls_gene_exp.diff, MCF10A_BT549_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: BT549_72hrs_rep2

description:
Sample 14
BT549 72 hrs PcTF replicate 2
Treated cell used to compute relative abundance of transcripts in BT549_72
BT549_gene_exp.diff, ALL_gene_exp.diff,  MCF10A_BT549_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: BT549 72 hrs PcTF


title: BT549_48hrs_rep2

description:
Sample 12
BT549 48 hrs PcTF replicate 2
Treated cell used to compute relative abundance of transcripts in BT549_48
BT549_gene_exp.diff, ALL_gene_exp.diff,  MCF10A_BT549_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: BT549 48 hrs PcTF


title: Single E15.5 MB mouse dopaminergic neuron (TH_015_B06)

description: scRNA-Seq

value: A

value: TAGGCATG

value: TATCCTCT

value: TAGGCATG,TATCCTCT

value: MB

value: Th-eGFP+ sorted dopaminergic neuron


title: Control_4

value: female

value: 5 weeks

value: ear

value: phorbol 12-myristate 13-acetate (PMA)-induced mouse ear inflammation model


title: BT549_48hrs_rep1

description:
Sample 11
BT549 48 hrs PcTF replicate 1
Treated cell used to compute relative abundance of transcripts in BT549_48
BT549_gene_exp.diff, ALL_gene_exp.diff,  MCF10A_BT549_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

value: PcTF


title: BT549_24hrs_rep2

description:
Sample 10
BT549 24 hrs PcTF replicate 2
Treated cell used to compute relative abundance of transcripts in BT549_24
BT549_gene_exp.diff, ALL_gene_exp.diff,  MCF10A_BT549_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: BT549 24 hrs PcTF


title: BT549_72hrs_rep1

description:
Sample 13
BT549 72 hrs PcTF replicate 1
Treated cell used to compute relative abundance of transcripts in BT549_72
BT549_gene_exp.diff, ALL_gene_exp.diff,  MCF10A_BT549_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: BT474_C_rep1

description:
Sample 7
BT474 untreated replicate 1
Control used to compute relative abundance of transcripts in BT474_24, BT474_48, BT474_72
controls_gene_exp.diff, BT474_gene_exp.diff, MCF10A_BT474_gene_exp.diff, ALL_gene_exp.diff, BT474_48rep1_rm_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: BT474 untreated

value: BT-474 (ATCC HTB-20)

value: control


title: BT549_24hrs_rep1

description:
Sample 9
BT549 24 hrs PcTF replicate 1
Treated cell used to compute relative abundance of transcripts in BT549_24
BT549_gene_exp.diff, ALL_gene_exp.diff,  MCF10A_BT549_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

value: transfection


title: BT474_72hrs_rep1

description:
Sample 5
BT474 72 hrs PcTF replicate 1
Treated cell used to compute relative abundance of transcripts in BT474_72
BT474_gene_exp.diff, MCF10A_BT474_gene_exp.diff, ALL_gene_exp.diff, BT474_48rep1_rm_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: BT474 72 hrs PcTF

value: 72 hrs


title: BT474_24hrs_rep2

description:
Sample 2
BT474 24 hrs PcTF replicate 2
Treated cell used to compute relative abundance of transcripts in BT474_24
BT474_gene_exp.diff, MCF10A_BT474_gene_exp.diff, ALL_gene_exp.diff, BT474_48rep1_rm_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

source_name: BT474 24 hrs PcTF

value: 24 hrs


title: BT474_48hrs_rep1

description:
Sample 3
BT474 48 hrs PcTF replicate 1
Treated cell used to compute relative abundance of transcripts in BT474_48
BT474_gene_exp.diff, MCF10A_BT474_gene_exp.diff, ALL_gene_exp.dif

source_name: BT474 48 hrs PcTF

value: 48 hrs


title: BT474_72hrs_rep2

description:
Sample 6
BT474 72 hrs PcTF replicate 2
Treated cell used to compute relative abundance of transcripts in BT474_72
BT474_gene_exp.diff, MCF10A_BT474_gene_exp.diff, ALL_gene_exp.diff, BT474_48rep1_rm_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: BT474_48hrs_rep2

description:
Sample 4
BT474 48 hrs PcTF replicate 2
Treated cell used to compute relative abundance of transcripts in BT474_48
BT474_gene_exp.diff, MCF10A_BT474_gene_exp.diff, ALL_gene_exp.diff, BT474_48rep1_rm_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: BT474_24hrs_rep1

description:
Sample 1
BT474 24 hrs PcTF replicate 1
Treated cell used to compute relative abundance of transcripts in BT474_24
BT474_gene_exp.diff, MCF10A_BT474_gene_exp.diff, ALL_gene_exp.diff, BT474_48rep1_rm_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff


title: UPMM3_BAP1_WT_2

city: New York

first: Yu

last: Chen

state: NY

address: 1237 York Ave.

institute: Memorial Sloan Kettering Cance

data_processing:
The sequenced reads from fastq files were mapped to hg19 using STAR and and downstream processing was done using cuffquant
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include FKPM values for each sample

source_name: UPMM3_BAP1 deficient_with ectopic expression of wild type BAP1

extract_protocol:
RNA was harvested using Qiagen RNeasy kit and 1 ug of total RNA was used for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: Biological replicates


title: UPMM3_BAP1_273_2

source_name: UPMM3_BAP1 deficient_with ectopic expression of mutant BAP1 [T273G]


title: UPMM3_BAP1_283_2

source_name: UPMM3_BAP1 deficient_with ectopic expression of mutant BAP1 [G283C]


title: UPMM3_BAP1_283_1


title: UPMM3_GFP_2

source_name: UPMM3_BAP1 deficient_with GFP expression


title: UPMM3_BAP1_WT_1


title: UPMM3_GFP_1


title: UPMM3_Parental_2

description: UPMM3 cell line contains a frameshift mutation in BAP1

source_name: UPMM3_BAP1 deficient


title: Ctrl_s3b

city: St. Louis

first: Makedonka

last: Mitreva

state: Missouri

address: 4444 Forest Park Ave

institute: McDonnell Genome Institute

data_processing:
Illumina Casava1.7 software used for basecalling.
Sequenced reads were adapter trimmed using Flexbar (v2.4) --max-uncalled 150 –min-read-length 25 adapter-trim-end LEFT adpater-min-overlap 7 adapter-threshold 3 adapter-match 1 adapter-mismatch -1 adapter-gap -7
Trimmed reads were mapped the the GRCh37.75 human reference using TopHat2 (v2.0.8) (default parameters except for -r 250)
Read counts per sample per gene were gathered using htseq-count (v0.5.4p1)
Genome_build: GRCh37.75
Supplementary_files_format_and_content: Read counts per gene per sample

extract_protocol:
ABI PRISM 6100 Nucleic Acid PrepStation
RNA libraries were prepared for sequencing using the NuGen Kit v2

tag: individual

tag: infection

value: uninfected control

value: follow-up (no treatment)

value: peripheral blood mononuclear cell (PBMC)


title: UPMM3_Parental_1


title: BT474_C_rep2

description:
Sample 8
BT474 untreated replicate 2
Control used to compute relative abundance of transcripts in BT474_24, BT474_48, BT474_72
controls_gene_exp.diff, BT474_gene_exp.diff, MCF10A_BT474_gene_exp.diff, ALL_gene_exp.diff, BT474_48rep1_rm_gene_exp.diff, MCF10A_BT474_48rep1_rm_gene_exp.diff, ALL_BT474_48rep1_rm_gene_exp.diff

value: control (vehicle only)


title: Sh_s3a

value: S. haematobium infected

value: baseline (pre-treatment)


title: Ctrl_s1b


title: Sh_s4b

value: follow-up (post-treatment)


title: Sh_s4a


title: Ctrl_s2a

value: baseline (no treatment)


title: Ctrl_s3a


title: Sh_s1b


title: Sh_s2a


title: UPMM3_BAP1_273_1


title: WT-H-D3

city: Tianjin

first: Jiaxi

last: Zhou

state: Tianjin

address: 288# Nanjing Road, He ping district

country: China

institute: PUMC

data_processing:
Illumina GA Pipeline v1.5 software used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence,then use BWA (Li, H. and Durbin, R., 2009) to map clean reads to genome reference and use Bowtie (Langmead B, et al., 2009) to gene reference
We provide genome alignment data in BAM format and recommend using IGV(Ietegrative Genomics Viewer) tool to visualize BAM file in different scales.
Genes expression level are quantified by a software package: RSEM(RNASeq by Expectation Maximization). RSEM (Li B and Dewey C N., 2011)
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample

source_name: H1 samples collected from day 3 after hematopoietic differentiation

growth_protocol: H1 were induced for stepwise hematopoietic differentiation. First, cells were cultured in Custom mTeSR1 medium supplemented with 40 ng/ml activinA (Peprotech) and 50 ng/ml BMP4 (Peprotech) for 2 days. Second, cells were incubated with Custom mTeSR1 medium supplemented with 40 ng/ml VEGF (Peprotech) and 50 ng/ml bFGF (Peprotech) for 2 days.

extract_protocol:
H1 drived cells was collected and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 2 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: genotype/variation

value: Wild Type


title: MUT-H-D3

source_name: MEIS1-/- H1 samples collected from day 3 after hematopoietic differentiation

growth_protocol: H1 and MEIS deleted H1 were induced for stepwise hematopoietic differentiation. First, cells were cultured in Custom mTeSR1 medium supplemented with 40 ng/ml activinA (Peprotech) and 50 ng/ml BMP4 (Peprotech) for 2 days. Second, cells were incubated with Custom mTeSR1 medium supplemented with 40 ng/ml VEGF (Peprotech) and 50 ng/ml bFGF (Peprotech) for 2 days.

extract_protocol:
RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 2 ug of total RNA for the construction of sequencing libraries.
RNA libraries were prepared for sequencing using standard Illumina protocols


title: WT-H-D3


title: WT-H-D4

source_name: H1 samples collected from day 4 after hematopoietic differentiation


title: WT-H-D0

source_name: Undifferentiated H1 cells


title: HO073C

data_processing:
Initial QC performed using FastQC v 0.11.2
Tophat v 2.0.13 was used to align samples
Cufflinks v 2.2.1 was used to generate abundances and fpkm values with max-bundle-frans <10000000> and masked genes with length <200
Genome_build: hg19
Supplementary_files_format_and_content: matrix of fpkm values per sample

value: saos2 cell line

value: cell line


title: Sh_s1a


title: WT-H-D2

source_name: H1 samples collected from day 2 after hematopoietic differentiation


title: HO072C

source_name: osteoblast

value: osteoblast cell line


title: HO075C

value: mg63 cell line


title: Sh_s3b


title: Ctrl_s1a


title: Ctrl_s2b


title: HO071B

source_name: normal bone

value: normal bone


title: HO069B


title: HO070B


title: HO068U

source_name: osteosarcoma

value: osteosarcoma

value: unknown


title: HO066U


title: HO074C

value: u2os cell line


title: HO065U


title: HO063

value: primary


title: HO062


title: HO060


title: Sh_s2b


title: HO056M

value: metastasis


title: HO055M


title: HO064U


title: HO058M


title: HO045


title: HO046M


title: HO076C

value: 143b cell line


title: HO044M


title: HO047M


title: HO042U


title: HO041U


title: HO057


title: HO040U


title: HO038


title: HO030


title: HO039U


title: HO025U


title: HO034


title: HO036


title: HO015


title: HO033


title: HO059


title: HO028


title: HO032


title: HO016


title: HO014


title: HO031


title: HO012


title: HO003


title: HO022U


title: HO052M


title: CCRF-CEM_DMSO

city: Barcelona

first: Christos

last: Gekas

address: Carrer del Doctor Aiguader 88, Lab277

country: Spain

institute: Centre for Genomic Regulation (CRG)

data_processing:
Read quality was assessed with FastQC (v0.11.2) and reads were trimmed (first 3 nt removed), converted to Sanger format and filtered for >35 quality score with the FASTX Toolkit
Reads were mapped against the human genome (GRCh38, Ensembl release 77) with TopHat (v2.0.13) using the following parameters: min-anchor-length 8; max splice-mismatches 0; min/max intron length 70/500,000; max-multihits 2; initial read mapping with bowtie-n; max-insertion-length 3; max-deletion-length 3; min/max-coverage-intron 50/20,000.
Transcript annotation and expression calculation (FPKM; fragments per kilobase of transcript per million mapped reads) for each sample was performed with Cufflinks (v2.2.1).
Genome_build: hg38
Supplementary_files_format_and_content: Tab-delimited text with Gene Annotations and FPKM values for each sample, obtained using Cufflinks

source_name: CCRF-CEM T-ALL cells

extract_protocol:
RNA from 4 T-ALL cell lines (RPMI8402, HPB-ALL, JURKAT, CCRF-CEM) subjected to 3 hrs of DMSO or PKF115-584 (310nM) treatment was collected and purified with the RNEasy Mini kit (QIAgen)
RNA was quantifed by Nanodrop and quality assessed by Agilent Bioanalyzer 2100. 2µg of each RNA sample (RIN 9.3-10.0) was subjected to Solexa stranded mRNA-seq (polyA+) library preparation and sequenced on a Solexa HiSeq 2000 sequencer (Illumina)

value: CCRF-CEM

value: DMSO


title: HO021U


title: HO043M


title: HO019


title: JURKAT_PKF

source_name: JURKAT T-ALL cells

value: JURKAT


title: HO018


title: HPB-ALL_PKF

source_name: HPB-ALL T-ALL cells

value: HPB-ALL


title: HO010


title: HO009


title: JURKAT_DMSO


title: CCRF-CEM_PKF


title: TM84

city: Urbana

first: William

middle: W

last: Metcalf

state: Illinois

address: 601 South Goodwin Avenue

department: Microbiology

institute: University of Illinois - Urbana-Champaign

data_processing:
Data processed with Casava 1.8.2 via manufacturer's instructions. Furthur processing performed with CLC Genomics Workbench 7.
Fastq files imported and trimmed for quality (Quality: 0.001, Ambiguous: 2, Discard: min 30, max 100) and Illumina adapter sequences removed.
After trimming, remaining reads that mapped to stable RNAs (16s, 23s, 5s rRNA and tRNAs) removed (Similarity: 0.9, Length: 0.85, Mismatch: 2, Insertion: 3, Deletion: 3, Global Alignment and Stand-alone read).
Remaining reads mapped to the genome for RNA-seq analyses (Similarity: 0.9, Length: 0.85, Mismatch: 2, Insertion: 3, Deletion: 3, Maximum number hits for a read: 10).
Mapped reads normalized with default settings, and differently expressed genes identified with the empirical analysis of differential gene expression (EDGE test).
Genome_build: Methanosarcina barkeri Fusaro chromosome (NC_007355) and plasmid (NC_007349)
Supplementary_files_format_and_content: Excel file (.xlsx) containing raw and normalized expression values for each sample, and pairwise comparisons of each genotype against all other genotypes.

organism: Methanosarcina barkeri str. Fusaro

growth_protocol: Grown to mid-exponential phase in High Salt medium with 125 mM methanol

extract_protocol:
2.5 ml culture combined with equivalent volume of TRIzol reagent (Ambion, Carlsbad, CA) and incubated at room temperature for 5 min. RNA isolated with Direct-zol RNA MiniPrep kit from Zymo Research (Irvine, CA). 16S and 23S rRNA was removed via substractive hybridization with biotinylated RNA probes and streptavidin-coated magnetic beads.
Illumina's TruSeq Stranded RNA Sample Prep kit followed. The result was 5' to 3' strand-specific libraries. All libraries pooled and qPCR quantitated. A single lane was used to sequence the pool with 101 cycles on a HiSeq2000. TruSeq SBS sequencing kit version 3 used.

value: delta-ech::FRT delta-vht::FRT delta-frh delta-hpt::PmcrB-fC31int-attB


title: RPMI8402_PKF

source_name: RPMI8402 T-ALL cells


title: TM82


title: TM81


title: HO002M


title: TM86

value: delta-ech::pac-hpt delta-vht delta-vhx delta-Mbar_A1842 delta-Mbar_A1843 delta-fre delta-frh delta-hpt::PmcrB-fC31int-attB


title: TM87


title: RPMI8402_DMSO


title: TM77


title: TM75

value: delta-frh delta-hpt::PmcrB-fC31int-attB


title: TM80


title: TM76


title: TM79


title: TM73


title: TM74


title: TM71

value: delta-ech delta-hpt::PmcrB-fC31int-attP


title: TM85


title: TM69

value: delta-vhx delta-hpt::PmcrB-fC31int-attP


title: TM70


title: TM66

value: delta-fre delta-hpt::PmcrB-fC31int-attP


title: TM64


title: TM65


title: TM72