title: Pf-3D7-Trophozoite-HP1

description:
P. falciparum sample collection and chromatin preparation  P. falciparum parasites were cultured at 5% haematocrit based on the original protocol published by Trager and Jensen (Trager and Jensen, 1978). Growth synchronization was achieved by repeated sorbitol treatments (Lambros and Vanderberg, 1979). 3D7 parasites were cultivated with AB+ human RBCs in RPMI 1640/25 mM Hepes standard culture medium supplemented with 0.5% Albumax II. NF54 and NF135 parasites were cultivated with O+ human RBCs in RPMI 1640/25 mM Hepes standard culture medium supplemented with 10 % human serum. Pf2004/164tdTom parasites (Brancucci et al., 2015) were cultivated with AB+ human RBCs in RPMI 1640/25 mM Hepes standard culture medium supplemented with 10 % human serum. Pf2004/164tdTom gametocytes were generated by inducing sexual commitment as described (Brancucci et al., 2015). After re-invasion cultures were treated with 50mM N-acetylglucosamine (Fivelman et al., 2007) for three consecutive days to eliminate asexual parasites.  Chromatin from 3D7 ring stages, trophozoites or schizonts (approximately 0.75-1.5x109 parasites each) and from Pf2004/T164dTom schizonts, stage II/III gametocytes (day four after re-invasion) or stage IV/V gametocytes (day nine after re-invasion) (approximately 2x108 parasites each) was prepared by crosslinking cultures with 1% formaldehyde (Sigma F8775) for 15 min at 37ºC. Crosslinking reactions were quenched by 0.125 M glycine. Nuclei were isolated by releasing parasites from infected RBCs using 0.05% saponin followed by lysis in CLB (20 mM Hepes, 10 mM KCl, 1 mM EDTA, 1 mM EGTA, 0.65% NP-40, 1mM DTT, 1x protease inhibitor (Roche Diagnostics), pH 7.9). Nuclei were washed and snap-frozen in CLB supplemented with 50% glycerol. Chromatin from NF54 and NF135 parasites (approximately 2-4x109 parasites each) was prepared by passing the cultures through Plasmodipure filters (EuroProxima) to remove white blood cells prior to formaldehyde crosslinking for 10 min at 37ºC and quenching in 0.125 M glycine. Nuclei were isolated by releasing parasites from infected RBCs using 0.05% saponin followed by gentle homogenisation (pestle B, 15 strokes) in CLB2 (10 mM Tris-HCl, 3 mM MgCl2, 0.2% NP40, 1x protease inhibitor (Roche Diagnostics), pH 8.0) and centrifugation through a 0.25 M sucrose cushion (in CLB2) at 2000 rpm for 10 min at 4°C. Nuclei were snap-frozen in CLB2 supplemented with 20% glycerol. Frozen nuclei were thawed and resuspended in sonication buffer (50mM Tris-HCl, 1% SDS, 10mM EDTA, 1x protease inhibitor (Roche Diagnostics), pH 8.0) and sonicated for 20-24 cycles of 30 sec ON/30 sec OFF (setting high, BioruptorTM Next Gen, Diagenode). Chromatin fragment sizes ranged from 100-600 bp as determined by de-crosslinking a 50 l aliquot and running the purified DNA on a 1% agarose gel
Pf-3D7-Trophozoite-HP1_over_Pf-3D7-Schizont-Input.BedGraph.gz

source_name: intraerythrocytic stage, trophozoite stage


title: AR-positive CARN-derived line_MB004

status: Public on Jan 16 2018

type: SRA

city: Newark

first: Antonina

last: Mitrofanova

state: NJ

address: 65 Bergen Street, Rm 923B

country: USA

institute: Rutgers University

library_source: transcriptomic

data_processing:
RNA-seq pipeline description: Columbia Genome Center standard pipeline
We use poly-A pull-down to enrich mRNAs from total RNA samples (200ng-1ug per sample, RIN>8 required) and proceed on library preparation by using Illumina TruSeq RNA prep kit. Libraries are then sequenced using Illumina HiSeq2500 at Columbia Genome Center. We multiplex samples in each lane, which yields targeted number of single-end/paired-end 100bp reads for each sample, as a fraction of 180 million reads for the whole lane.
We use RTA (Illumina) for base calling and CASAVA (version 1.8.2) for converting BCL to fastq format, coupled with adaptor trimming. We map the reads to a reference genome (Human: NCBI/build37.2; Mouse: UCSC/mm9) using Tophat [1] (version 2.0.4) with 4 mismatches (--read-mismatches = 4) and 10 maximum multiple hits (--max-multihits = 10). To tackle the mapping issue of reads that are from exon-exon junctions, Tophat infers novel exon-exon junctions ab initio, and combine them with junctions from known mRNA sequences (refgenes) as the reference annotation.  We estimate the relative abundance (aka expression level) of genes and splice isoforms using cufflinks [2] (version 2.0.2) with default settings. We test for differentially expressed genes under various conditions using DEseq [3]. It is an R package based on a negative binomial distribution that models the number reads from RNA-seq experiments and test for differential expression.
Raw RNAseq counts were normalized (variance stabilization) using DESeq2 package in R-studio Version 0.99.484
Genome_build: Mouse: UCSC/mm9
Supplementary_files_format_and_content: Tab-delimited text or xls files include DESeq2 normalized values for each Sample

molecule: total RNA

organism: Mus musculus

source_name: AR-positive CARN-derived line

extract_protocol:
RNA was extracted using the MagMAX-96 for Microarray kit (Ambion). Quality control was performed with Agilent Bioanalyser 2100
mRNA was enriched by poly-A pull-down, and library preparation was performed using an Illumina TruSeq RNA prep kit. Libraries were pooled and sequenced using an Illumina HiSeq2500 instrument, yielding approximately 30 million single-ended 100 bp reads per sample. RTA (Illumina) was used for base calling and bcl2fastq2 (version 2.17) for conversion of BCL to fastq format, coupled with adaptor trimming. Reads were mapped to the mouse genome (UCSC/mm10) using STAR (2.5.2b) and FeatureCounts (v1.5.0-p3).

tag: strain

tag: tissue

value: prostate

tag: age

value: 4-5 months

tag: genotype

value: Nkx3.1CreERT2/+; Arflox/Y; R26R-YFP/+ (Arflox/Y allele not recombined)


title: Pf-3D7-Schizont-Input

city: Nijmegen

first: Sabine

last: Fraschka

address: Geert Grooteplein 28

department: Molecular Biology

country: Netherlands

institute: Radboud University Nijmegen

description:
P. falciparum sample collection and chromatin preparation  P. falciparum parasites were cultured at 5% haematocrit based on the original protocol published by Trager and Jensen (Trager and Jensen, 1978). Growth synchronization was achieved by repeated sorbitol treatments (Lambros and Vanderberg, 1979). 3D7 parasites were cultivated with AB+ human RBCs in RPMI 1640/25 mM Hepes standard culture medium supplemented with 0.5% Albumax II. NF54 and NF135 parasites were cultivated with O+ human RBCs in RPMI 1640/25 mM Hepes standard culture medium supplemented with 10 % human serum. Pf2004/164tdTom parasites (Brancucci et al., 2015) were cultivated with AB+ human RBCs in RPMI 1640/25 mM Hepes standard culture medium supplemented with 10 % human serum. Pf2004/164tdTom gametocytes were generated by inducing sexual commitment as described (Brancucci et al., 2015). After re-invasion cultures were treated with 50mM N-acetylglucosamine (Fivelman et al., 2007) for three consecutive days to eliminate asexual parasites.  Chromatin from 3D7 ring stages, trophozoites or schizonts (approximately 0.75-1.5x109 parasites each) and from Pf2004/T164dTom schizonts, stage II/III gametocytes (day four after re-invasion) or stage IV/V gametocytes (day nine after re-invasion) (approximately 2x108 parasites each) was prepared by crosslinking cultures with 1% formaldehyde (Sigma F8775) for 15 min at 37ºC. Crosslinking reactions were quenched by 0.125 M glycine. Nuclei were isolated by releasing parasites from infected RBCs using 0.05% saponin followed by lysis in CLB (20 mM Hepes, 10 mM KCl, 1 mM EDTA, 1 mM EGTA, 0.65% NP-40, 1mM DTT, 1x protease inhibitor (Roche Diagnostics), pH 7.9). Nuclei were washed and snap-frozen in CLB supplemented with 50% glycerol. Chromatin from NF54 and NF135 parasites (approximately 2-4x109 parasites each) was prepared by passing the cultures through Plasmodipure filters (EuroProxima) to remove white blood cells prior to formaldehyde crosslinking for 10 min at 37ºC and quenching in 0.125 M glycine. Nuclei were isolated by releasing parasites from infected RBCs using 0.05% saponin followed by gentle homogenisation (pestle B, 15 strokes) in CLB2 (10 mM Tris-HCl, 3 mM MgCl2, 0.2% NP40, 1x protease inhibitor (Roche Diagnostics), pH 8.0) and centrifugation through a 0.25 M sucrose cushion (in CLB2) at 2000 rpm for 10 min at 4°C. Nuclei were snap-frozen in CLB2 supplemented with 20% glycerol. Frozen nuclei were thawed and resuspended in sonication buffer (50mM Tris-HCl, 1% SDS, 10mM EDTA, 1x protease inhibitor (Roche Diagnostics), pH 8.0) and sonicated for 20-24 cycles of 30 sec ON/30 sec OFF (setting high, BioruptorTM Next Gen, Diagenode). Chromatin fragment sizes ranged from 100-600 bp as determined by de-crosslinking a 50 l aliquot and running the purified DNA on a 1% agarose gel
Pf-3D7-Ring-HP1_over_Pf-3D7-Schizont-Input.BedGraph.gz
Pf-3D7-Trophozoite-HP1_over_Pf-3D7-Schizont-Input.BedGraph.gz
Pf-3D7-Schizont-HP1_over_Pf-3D7-Schizont-Input.BedGraph.gz

library_source: genomic

data_processing:
RTA v2 software for base calling and bcl2fastq v2.16.0.10 conversion software for fastq conversion
Data were mapped with BWA samse (Version: 0.7.12-r1039) against the respective reference genome (P. berghei ANKA, P. chabaudi chabaudi, P. yoelii yoelii YM, P. falciparum 3D7 and P. knowlesi H from PlasmoDB version 26 and P. vivax P01 from PlasmoDB version 29. Pf2004 samples were additionally mapped against a draft Pf2004 genome assembly kindly provided by Thomas Otto (Welcome Trust Sanger Institute)
Sam files were converted to bam files and mapped reads were filtered to mapping quality ≥15 (SAM tools v1.2). Only uniquely mapped reads were used for further analysis.
BedGraph files were generated using bedtools genomecov with the option -bga and normalized using -scale and the scaling factor ‘1000000/amount of unique reads’.
Begraph log2 ratio were genereated using bedtools unionbedg
Genome_build: see second processing step
Supplementary_files_format_and_content: BedGraph log2 ratio files show the coverage as log2 ratio of ChIP over Input calculated using normalized BedGraph files

molecule: genomic DNA

organism: Plasmodium falciparum

source_name: intraerythrocytic stage, schizont stage

extract_protocol:
Chromatin immunoprecipitations:  For each ChIP reaction, sonicated chromatin containing 500 ng of DNA was incubated in incubation buffer (0.75% SDS, 5% Triton-X-100, 750 mM NaCl, 5 mM EDTA, 2.5 mM EGTA, 100 mM Hepes, pH 7.4) with either 1 µg rabbit α-PfHP1 (for P. falciparum), 1 µg rabbit α-PvHP1 (for P. vivax and P. knowlesi) or 1 µg rabbit α-PbHP1 (for P. berghei, P. chaubaudi and P. yoelii) as well as 10 µl protA and 10 µl protG Dynabeads suspension (Life Technologies, #10008D and #10009D).    For each sample four ChIP reactions were prepared and incubated overnight at 4°C while rotating. Beads were washed twice with wash buffer 1 (0.1% SDS, 0.1% DOC, 1% Triton-X100, 150 mM NaCl, 1 mM EDTA, 0.5 mM EGTA, 20 mM Hepes, pH 7.4), once with wash buffer 2 (0.1% SDS, 0.1% DOC, 1% Triton-X100, 500 mM NaCl, 1 mM EDTA, 0.5 mM EGTA, 20 mM Hepes, pH 7.4), once with wash buffer 3 (250 mM LiCl, 0.5% DOC, 0.5% NP-40, 1 mM EDTA, 0.5 mM EGTA, 20 mM Hepes, pH 7.4) and twice with wash buffer 4 (1 mM EDTA, 0.5 mM EGTA, 20 mM Hepes, pH 7.4). Each wash was performed for 5 min at 4°C while rotating. Subsequently, immunoprecipitated chromatin was eluted in elution buffer (1% SDS, 0.1M NaHCO3) at room temperature. The eluted chromatin samples and the corresponding input samples (sonicated input chromatin containing 500 ng DNA) were de-crosslinked in 1% SDS/0.1 M NaHCO3/1 M NaCl at 45°C overnight while shaking. For each parasite strain or species the separate ChIP samples were combined and the DNA was purified using QIAquick MinElute PCR columns (Qiagen).
For each sequencing library  2-10 ng of ChIP or input DNA were end-repaired, extended with 3′ A-overhangs and ligated to barcoded NextFlex adapters (Bio Scientific, #514122) as described previously (Hoeijmakers et al., 2011). Libraries were amplified (98°C for 2 min; four cycles 98°C for 20 sec, 62°C for 3 min; 62°C for 5 min) using KAPA HiFi HotStart ready mix (KAPA Biosystems, KM2602) and NextFlex primer mix (Bio Scientific, #514122) as described (Kensche et al., 2016). 225-325 bp fragments (including the 125 bp NextFlex adapter) were size-selected using a 2% E-Gel Size Select agarose gel (Invitrogen, #G6610-02) and amplified by PCR for eight or ten cycles under the same condition as described above. Library purification and removal of adapter dimers was performed with Agencourt AMPure XP beads in a 1:1 library:beads ratio (Beckman Coulter, #A63880).

tag: antibody

value: none/input


title: Pf-3D7-Ring-HP1

description:
P. falciparum sample collection and chromatin preparation  P. falciparum parasites were cultured at 5% haematocrit based on the original protocol published by Trager and Jensen (Trager and Jensen, 1978). Growth synchronization was achieved by repeated sorbitol treatments (Lambros and Vanderberg, 1979). 3D7 parasites were cultivated with AB+ human RBCs in RPMI 1640/25 mM Hepes standard culture medium supplemented with 0.5% Albumax II. NF54 and NF135 parasites were cultivated with O+ human RBCs in RPMI 1640/25 mM Hepes standard culture medium supplemented with 10 % human serum. Pf2004/164tdTom parasites (Brancucci et al., 2015) were cultivated with AB+ human RBCs in RPMI 1640/25 mM Hepes standard culture medium supplemented with 10 % human serum. Pf2004/164tdTom gametocytes were generated by inducing sexual commitment as described (Brancucci et al., 2015). After re-invasion cultures were treated with 50mM N-acetylglucosamine (Fivelman et al., 2007) for three consecutive days to eliminate asexual parasites.  Chromatin from 3D7 ring stages, trophozoites or schizonts (approximately 0.75-1.5x109 parasites each) and from Pf2004/T164dTom schizonts, stage II/III gametocytes (day four after re-invasion) or stage IV/V gametocytes (day nine after re-invasion) (approximately 2x108 parasites each) was prepared by crosslinking cultures with 1% formaldehyde (Sigma F8775) for 15 min at 37ºC. Crosslinking reactions were quenched by 0.125 M glycine. Nuclei were isolated by releasing parasites from infected RBCs using 0.05% saponin followed by lysis in CLB (20 mM Hepes, 10 mM KCl, 1 mM EDTA, 1 mM EGTA, 0.65% NP-40, 1mM DTT, 1x protease inhibitor (Roche Diagnostics), pH 7.9). Nuclei were washed and snap-frozen in CLB supplemented with 50% glycerol. Chromatin from NF54 and NF135 parasites (approximately 2-4x109 parasites each) was prepared by passing the cultures through Plasmodipure filters (EuroProxima) to remove white blood cells prior to formaldehyde crosslinking for 10 min at 37ºC and quenching in 0.125 M glycine. Nuclei were isolated by releasing parasites from infected RBCs using 0.05% saponin followed by gentle homogenisation (pestle B, 15 strokes) in CLB2 (10 mM Tris-HCl, 3 mM MgCl2, 0.2% NP40, 1x protease inhibitor (Roche Diagnostics), pH 8.0) and centrifugation through a 0.25 M sucrose cushion (in CLB2) at 2000 rpm for 10 min at 4°C. Nuclei were snap-frozen in CLB2 supplemented with 20% glycerol. Frozen nuclei were thawed and resuspended in sonication buffer (50mM Tris-HCl, 1% SDS, 10mM EDTA, 1x protease inhibitor (Roche Diagnostics), pH 8.0) and sonicated for 20-24 cycles of 30 sec ON/30 sec OFF (setting high, BioruptorTM Next Gen, Diagenode). Chromatin fragment sizes ranged from 100-600 bp as determined by de-crosslinking a 50 l aliquot and running the purified DNA on a 1% agarose gel
Pf-3D7-Ring-HP1_over_Pf-3D7-Schizont-Input.BedGraph.gz

source_name: intraerythrocytic stage, ring stage


title: WT C

city: Madison

first: Gina

last: Gordon

state: WI

address: 1415 Engineering Dr

department: Chemical and Biological Engineering

institute: University of Wisconsin Madison

data_processing:
Sequencing files were aligned to the chromsome (NC_010475), pAQ1 (NC_010476), pAQ3 (NC_010477), pAQ4 (NC_010478), pAQ5 (NC_010479), pAQ6 (NC_010480), and pAQ7 (NC_010474) using Bowtie2 (v 2.2.6) and samtools (v 1.2).
Counts for each feature in the general feature format (.gff) files were obtained with the htseq-count script using union mode and stranded set to reverse (HTseq v 0.6.1).
edgeR (v 3.16.5) was used to test for differential gene expression of each mutant compared to WT. Specifically, feature counts were loaded and filtered for all genes that had at least 1 read per million in 3 samples and tested for differential expression with exactTest using tagwise dispersion. P-values were adjusted with the Benjamini and Hochberg algorithm.
Genome_build: NC_010475, NC_010476, NC_010477, NC_010478, NC_010479, NC_010480, NC_010474
Supplementary_files_format_and_content: One .txt file contains counts for all gene features on the plasmid and chromosomes for each strain type (biological triplicate). The other .txt file contains gene expression data and the false discovery rate for each strain compared to WT.

organism: Picosynechococcus sp. PCC 7002

source_name: bacterial cells

growth_protocol: Strains were maintained on media A+ agar (1.5%) plates with the appropriate antibiotic or antibiotics (gentamicin 30 μg/ml, kanamycin 100 μg/ml, and streptomycin 100 μg/ml). Pre-cultures of 20 mL A+ media were bubbled with air overnight. The OD730nm was measured and 1 1L pyrex bottles filled with 900 mL media A+ was inoculated with pre-culture for an OD730nm = 0.01. Cultures were bubbled with air for 24 hours before harvesting 40 mL and adding 10 mL of cold stop solution (10% phenol in ethanol). Samples were spun down at 4°C in a Beckamn Coulter Avanti J-E Centrifuge at 10,000xg for 10 minutes. Supernatant was removed and cell pellets were frozen in liquid nitrogen and stored at -80°C.

extract_protocol:
RNA was extracted using the hot phenol method outlined in Khodursky A, Bernstein J, Peter B, Rhodius V, Wendisch V, Zimmer D. 2003. Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management. Methods Mol Biol 224:61–78.
RNA was submitted to the University of Wisconsin Biotechnology Gene Expression Center for RNA-sequencing. rRNA was removed with a Ribo-Zero Magnetic Kit and the library was created using a TruSeq Stranded Total RNA Library Kit. Samples were run on an Illumina HiSeq 2500.

value: WT


title: AR-positive CARN-derived line_MB003


title: AR-deleted CARN-derived line_MB001

source_name: AR-deleted CARN-derived line

value: Nkx3.1CreERT2/+; Arflox/Y; R26R-YFP/+ (Arflox/Y allele recombined)


title: Reb1 ChIP-exo replicate2

city: University Park

first: Bongsoo

last: Park

state: PA

address: 453 North Frear Building

institute: Penn State University

description:
Replicate 2
Reb1_ChIP-exo_Filtered_PeakPairs.gff

data_processing:
For single end reads from HiSeq, basecalls were performed using CASAVA version 1.7 and for paired end reads from NextSeq, basecalls were performed using Bcl2fastq version 2.16.
ChIP-exo reads were aligned to Saccer3 genome assembly using bwa mem version 0.7.9a for paired reads.
GeneTrack peak caller; https://github.com/ialbert/chipexo/tree/master/genetrack (-s 5 -e 10)
Genome_build: sacCer3
Supplementary_files_format_and_content: gff, peak pair calls filtered for significance over background

organism: Saccharomyces cerevisiae

source_name: in vivo

growth_protocol: For ChIP-exo, cells were grown to an O.D600 of 0.8 - 1.0 at 25°C.

extract_protocol:
For PB-exo, WhIP-exo, and Native PB-seq, lysates were clarified from sonicated genomic DNA and protein-DNA complexes were isolated with antibody.
For ChIP-exo, lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with IgG antibody.
ChIP-exo libraries were prepared for sequencing using standard SOLiD & Illumina protocols with a minor modification; Reference paper:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3813302/

treatment_protocol:
For PB-exo and WhIP-exo, reactions were crosslinked with formaldehyde to a final concentration of 0.05%.
For ChIP-exo, cells were crosslinked with formaldehyde to a final concentration of 1.0%.
For Native PB-seq, reactions were not cross-linked

tag: chip antibody

value: Reb1-TAP (Sigma i5006-100MG, Lot#SLBM2617V)

tag: cell description

value: GRF88, MATa his4-38, S288C background


title: Reb1 ChIP-exo replicate5

description:
Replicate 5
Reb1_ChIP-exo_Filtered_PeakPairs.gff


title: NoAb ChIP-exo replicate2

description: Replicate 2

value: None specific antibody


title: Reb1 ChIP-exo replicate3

description:
Replicate 3
Reb1_ChIP-exo_Filtered_PeakPairs.gff


title: NoAb ChIP-exo replicate1

description: Replicate 1


title: Reb1 ChIP-exo replicate4

description:
Replicate 4
Reb1_ChIP-exo_Filtered_PeakPairs.gff


title: Reb1 ChIP-exo replicate1

description:
Replicate 1
Reb1_ChIP-exo_Filtered_PeakPairs.gff


title: Reb1 WhIP-exo replicate 3

description:
Replicate 3
Reb1_WhIP-exo_Filtered_PeakPairs.gff

source_name: in vitro


title: No template WhIP-exo replicate1

description: Replicate 1

value: Ume6-TAP (Sigma i5006-100MG, Lot#SLBM2617V)


title: Reb1 WhIP-exo replicate 2

description:
Replicate 2
Reb1_WhIP-exo_Filtered_PeakPairs.gff


title: Reb1 WhIP-exo replicate 1

description:
Replicate 1
Reb1_WhIP-exo_Filtered_PeakPairs.gff


title: Reb1 PB-exo 100nM replicate12

description:
Replicate 12
Reb1_PB-exo_Filtered_PeakPairs.gff

value: Rap1-TAP (Genescript A00683, Lot 12D000473)


title: Reb1 PB-exo 100nM replicate11

description:
Replicate 11
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Reb1 PB-exo 100nM replicate9

description:
Replicate 9
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Reb1 PB-exo 100nM replicate10

description:
Replicate 10
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Reb1 PB-exo 100nM replicate6

description:
Replicate 6
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Reb1 PB-exo 100nM replicate8

description:
Replicate 8
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Reb1 PB-exo 100nM replicate7

description:
Replicate 7
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Reb1 PB-exo 100nM replicate5

description:
Replicate 5
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Reb1 Native PB-seq 100nM replicate3

description:
Replicate 3
Reb1_Native_PB-seq_Filtered_Peak_Pairs.gff


title: Reb1 Native PB-seq 100nM replicate2

description:
Replicate 2
Reb1_Native_PB-seq_Filtered_Peak_Pairs.gff


title: Reb1 PB-exo 100nM replicate4

description:
Replicate 4
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Reb1 Native PB-seq 100nM replicate1

description:
Replicate 1
Reb1_Native_PB-seq_Filtered_Peak_Pairs.gff


title: Rap1 ChIP-exo replicate4

description:
Replicate 4
Rap1_ChIP-exo_Filtered_PeakPairs.gff

value: Rap1-TAP (Sigma i5006-100MG, Lot#SLBM2617V)


title: AR-deleted CARN-derived line_MB002


title: Reb1 PB-exo 100nM replicate3

description:
Replicate 3
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Reb1 PB-exo 100nM replicate2

description:
Replicate 2
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Rap1 ChIP-exo replicate3

description:
Replicate 3
Rap1_ChIP-exo_Filtered_PeakPairs.gff


title: Reb1 PB-exo 100nM replicate1

description:
Replicate 1
Reb1_PB-exo_Filtered_PeakPairs.gff


title: Rap1 PB-exo 100nM replicate3

description:
Replicate 3
Rap1_PB-exo_Filtered_PeakPairs.gff


title: Rap1 PB-exo 100nM replicate4

description:
Replicate 4
Rap1_PB-exo_Filtered_PeakPairs.gff


title: Pho4 PB-exo 50nM replicate2

description:
Replicate 2
Pho4_PB-exo_Filtered_PeakPairs.gff


title: Rap1 ChIP-exo replicate1

description:
Replicate 1
Rap1_ChIP-exo_Filtered_PeakPairs.gff


title: Rap1 PB-exo 100nM replicate2

description:
Replicate 2
Rap1_PB-exo_Filtered_PeakPairs.gff


title: NoAb PB-exo replicate1

description: Replicate 1


title: Rap1 PB-exo 100nM replicate1

description:
Replicate 1
Rap1_PB-exo_Filtered_PeakPairs.gff


title: Pho4 PB-exo 50nM replicate1

description:
Replicate 1
Pho4_PB-exo_Filtered_PeakPairs.gff


title: Mcm1 ChIP-exo replicate3

description:
Replicate 3
Mcm1_ChIP-exo_Filtered_PeakPairs.gff

value: Mcm1-TAP (Sigma i5006-100MG, Lot#SLBM2617V)


title: Abf1 PBXO 100nm replicate1

description:
Replicate 1
Abf1_PB-exo_Filtered_PeakPairs.gff

value: Abf1-TAP (Genescript A00683, Lot 12D000473)


title: Abf1 native PB-seq 100 nM replicate3

description:
Replicate 3
Abf1_Native_PB-seq_Filtered_PeakPairs.gff


title: Mcm1 ChIP-exo replicate2

description:
Replicate 2
Mcm1_ChIP-exo_Filtered_PeakPairs.gff


title: Mcm1 ChIP-exo replicate1

description:
Replicate 1
Mcm1_ChIP-exo_Filtered_PeakPairs.gff


title: Abf1 native PB-seq 100 nM replicate2

description:
Replicate 2
Abf1_Native_PB-seq_Filtered_PeakPairs.gff


title: Abf1 native PB-seq 100 nM replicate1

description:
Replicate 1
Abf1_Native_PB-seq_Filtered_PeakPairs.gff


title: Mcm1 PB-exo 1uM replicate2

description:
Replicate 2
Mcm1_PB-exo_Filtered_PeakPairs.gff

value: Mcm1-TAP (Genescript A00683, Lot 12D000473)


title: Mcm1 PB-exo 1uM replicate1

description:
Replicate 1
Mcm1_PB-exo_Filtered_PeakPairs.gff


title: P.knowlesi-A1H1-HP1

description:
P. knowlesi sample collection and chromatin preparation  P. knowlesi A1-H.1 parasites were grown in O+ human RBCs obtained from the United Kingdom National Blood Transfusion Service. P. knowlesi A1-C.1 parasites were grown in M. fascicularis blood provided by NIBSC (UK), which was collected by venous puncture into K2 EDTA vacutainers (Becton Dickinson) as described previously (Moon et al., 2013). Parasite cultures were synchronised by centrifugation through a density cushion of Nycodenz (Axis-Shield) as previously described (Moon et al., 2013). Cultures containing a schizont parasitaemia of around 5% were passed through Plasmodipure filters (EuroProxima) to remove white blood cells prior to crosslinking for 10 min at 37ºC in 1% formaldehyde (Thermo Scientific, 28908) and quenching in 0.125 M glycine. Red blood cells were removed by lysis on ice for 10 min with 0.15% saponin/PBS before washing the pellet in PBS and snap-freezing the parasite pellets in liquid nitrogen. Nuclei were isolated by lysis in CLB, washed and aliquots corresponding to approximately 1x109 nuclei were snap-frozen in CLB supplemented with 50% glycerol. Preparation of sheared chromatin was performed as described above for P. falciparum.
P.knowlesi-A1H1-HP1_over_P.knowlesi-A1H1-Input.BedGraph.gz

organism: Plasmodium knowlesi


title: P.knowlesi-A1H1-Input


title: P.knowlesi-A1C1-Input

description:
P. knowlesi sample collection and chromatin preparation  P. knowlesi A1-H.1 parasites were grown in O+ human RBCs obtained from the United Kingdom National Blood Transfusion Service. P. knowlesi A1-C.1 parasites were grown in M. fascicularis blood provided by NIBSC (UK), which was collected by venous puncture into K2 EDTA vacutainers (Becton Dickinson) as described previously (Moon et al., 2013). Parasite cultures were synchronised by centrifugation through a density cushion of Nycodenz (Axis-Shield) as previously described (Moon et al., 2013). Cultures containing a schizont parasitaemia of around 5% were passed through Plasmodipure filters (EuroProxima) to remove white blood cells prior to crosslinking for 10 min at 37ºC in 1% formaldehyde (Thermo Scientific, 28908) and quenching in 0.125 M glycine. Red blood cells were removed by lysis on ice for 10 min with 0.15% saponin/PBS before washing the pellet in PBS and snap-freezing the parasite pellets in liquid nitrogen. Nuclei were isolated by lysis in CLB, washed and aliquots corresponding to approximately 1x109 nuclei were snap-frozen in CLB supplemented with 50% glycerol. Preparation of sheared chromatin was performed as described above for P. falciparum.
P.knowlesi-A1C1-HP1_over_P.knowlesi-A1C1-Input.BedGraph.gz


title: Cbf1 ChIP-exo replicate5

description:
Replicate 5
Cbf1_ChIP-exo_Filtered_PeakPairs.gff

value: Cbf1-TAP (Sigma i5006-100MG, Lot#SLBM2617V)


title: P.berghei-Input

description:
P. berghei, P. chabaudi and P. yoelii sample collection and chromatin preparation  For each of the three parasite species, whole blood of infected mice containing approximately 5x109 schizonts (three mice for P. yoelii, four mice for P. chabaudi, five mice for P. berghei)  was diluted in standard P. falciparum culture medium and passed through a Plasmodipure filter (EuroProxima) to remove white blood cells. The purified RBCs were collected by centrifugation at 2’000 rpm for 5 min, resuspended in 30 ml culture medium and crosslinked at 37˚C for 10 min in presence of 1% formaldehyde (Sigma F8775). Crosslinking reactions were quenched by 0.125 M glycine. The crosslinked RBCs suspension was split into three equal aliquots, centrifuged at 2’000 rpm for 5 min, supernatants were removed and the RBC pellets snap-frozen in liquid nitrogen. Nuclei were isolated by releasing parasites from infected RBCs using 0.05% saponin followed by lysis in CLB (20 mM Hepes, 10 mM KCl, 1 mM EDTA, 1 mM EGTA, 0.65% NP-40, 1mM DTT, 1x protease inhibitor (Roche Diagnostics), pH 7.9). Again, nuclei were washed and aliquots corresponding to approximately 1x109 nuclei were snap-frozen in CLB supplemented with 50% glycerol. Preparation of sheared chromatin was performed as described above for P. falciparum.
P.berghei-HP1_over_P.berghei-Input.BedGraph.gz

organism: Plasmodium berghei

value: ANKA


title: P.yoelii-Input

description:
P. berghei, P. chabaudi and P. yoelii sample collection and chromatin preparation  For each of the three parasite species, whole blood of infected mice containing approximately 5x109 schizonts (three mice for P. yoelii, four mice for P. chabaudi, five mice for P. berghei)  was diluted in standard P. falciparum culture medium and passed through a Plasmodipure filter (EuroProxima) to remove white blood cells. The purified RBCs were collected by centrifugation at 2’000 rpm for 5 min, resuspended in 30 ml culture medium and crosslinked at 37˚C for 10 min in presence of 1% formaldehyde (Sigma F8775). Crosslinking reactions were quenched by 0.125 M glycine. The crosslinked RBCs suspension was split into three equal aliquots, centrifuged at 2’000 rpm for 5 min, supernatants were removed and the RBC pellets snap-frozen in liquid nitrogen. Nuclei were isolated by releasing parasites from infected RBCs using 0.05% saponin followed by lysis in CLB (20 mM Hepes, 10 mM KCl, 1 mM EDTA, 1 mM EGTA, 0.65% NP-40, 1mM DTT, 1x protease inhibitor (Roche Diagnostics), pH 7.9). Again, nuclei were washed and aliquots corresponding to approximately 1x109 nuclei were snap-frozen in CLB supplemented with 50% glycerol. Preparation of sheared chromatin was performed as described above for P. falciparum.
P.yoelii-HP1_over_P.yoelii-Input.BedGraph.gz

organism: Plasmodium yoelii

value: yoelii YM


title: Cbf1 ChIP-exo replicate3

description:
Replicate 3
Cbf1_ChIP-exo_Filtered_PeakPairs.gff


title: P.knowlesi-A1C1-HP1


title: Rap1 ChIP-exo replicate2

description:
Replicate 2
Rap1_ChIP-exo_Filtered_PeakPairs.gff


title: Cbf1 ChIP-exo replicate1

description:
Replicate 1
Cbf1_ChIP-exo_Filtered_PeakPairs.gff


title: P.yoelii-HP1


title: P.chabaudi-HP1

description:
P. berghei, P. chabaudi and P. yoelii sample collection and chromatin preparation  For each of the three parasite species, whole blood of infected mice containing approximately 5x109 schizonts (three mice for P. yoelii, four mice for P. chabaudi, five mice for P. berghei)  was diluted in standard P. falciparum culture medium and passed through a Plasmodipure filter (EuroProxima) to remove white blood cells. The purified RBCs were collected by centrifugation at 2’000 rpm for 5 min, resuspended in 30 ml culture medium and crosslinked at 37˚C for 10 min in presence of 1% formaldehyde (Sigma F8775). Crosslinking reactions were quenched by 0.125 M glycine. The crosslinked RBCs suspension was split into three equal aliquots, centrifuged at 2’000 rpm for 5 min, supernatants were removed and the RBC pellets snap-frozen in liquid nitrogen. Nuclei were isolated by releasing parasites from infected RBCs using 0.05% saponin followed by lysis in CLB (20 mM Hepes, 10 mM KCl, 1 mM EDTA, 1 mM EGTA, 0.65% NP-40, 1mM DTT, 1x protease inhibitor (Roche Diagnostics), pH 7.9). Again, nuclei were washed and aliquots corresponding to approximately 1x109 nuclei were snap-frozen in CLB supplemented with 50% glycerol. Preparation of sheared chromatin was performed as described above for P. falciparum.
P.chabaudi-HP1_over_P.chabaudi-Input.BedGraph.gz

organism: Plasmodium chabaudi

value: chabaudi AS


title: P.berghei-HP1


title: Cbf1 PB-exo 1uM replicate2

description:
Replicate 2
Cbf1_PB-exo_Filtered_PeakPairs.gff

value: Cbf1-TAP (Genescript A00683, Lot 12D000473)


title: Cbf1 PB-exo 1uM replicate1

description:
Replicate 1
Cbf1_PB-exo_Filtered_PeakPairs.gff


title: P.chabaudi-Input

value: none/input


title: Abf1 ChIP-exo replicate5

description:
Replicate 5
Abf1_ChIP-exo_Filtered_PeakPairs.gff

value: Abf1-TAP (Sigma i5006-100MG, Lot#SLBM2617V)


title: 2_2_heat_T6h

city: Oxford

first: Angela

middle: B

last: Brueggemann

address: Peter Medawar Building for Pathogen Research

department: Nuffield Department of Medicine

country: United Kingdom

institute: University of Oxford

description: Processed data file: Processed_data_file.csv

data_processing:
The sequenced forward and reverse reads were paired and mapped to the S. pneumoniae strain 2/2 genome using Bowtie2 with the highest sensitivity option.
Differential gene expression was assessed in Geneious using the DESeq method.
Genes with an adjusted P value <0.05 were deemed to be differentially expressed.
Genome_build: 2/2 Reference Genome
Supplementary_files_format_and_content: Processed_data_file.csv: Comma-delimited text file includes the ratio of the normalized values between the control and heat for all genes at each time point (Log 2 of Differential Expression Ratio) and a p-value indicating the confidence that each gene is differentially expressed (Differential Expression p-value).

organism: Streptococcus pneumoniae

source_name: broth culture, heat, 6hr

extract_protocol:
RNA was immediately extracted from the samples using the Promega Maxwell® 16 Instrument and LEV simplyRNA Cells purification kit, following the manufacturer’s protocol.
RNA extracts were sent to the Oxford Genomics Centre where library preps were made using RNA-Seq Ribozero kits (Illumina, Inc).

tag: growth condition

tag: timepoint

value: 6 hour


title: Abf1 ChIP-exo replicate4

description:
Replicate 4
Abf1_ChIP-exo_Filtered_PeakPairs.gff


title: 2_2_control_T5h

source_name: broth culture, control, 5hr

value: 5 hour


title: SCNT_KDM4E_8-cell_replicate2

city: Yangling

first: Xin

last: Liu

state: Shaanxi

address: 3 Taicheng Road

department: College of Veterinary Medicine

country: China

institute: Northwest A&F University

data_processing:
bcl2fastq2 Conversion software (v2.16) was used for basecalling with the parameters bcl2fastq2-v2.16/bin/bcl2fastq --input-dir <runfolder-dir>/Data/Intensities/BaseCalls/ --output-dir <output-dir> --use-bases-mask Y*,Y*,Y*,Y*
Noise reads were removed in raw reads followed as: 1) Remove reads with adaptors; 2) Remove reads in which unknown bases(N) are more than 10%; 3) Remove low quality reads (we define the low quality read as the percentage of base which quality is lesser than 20 is greater than 50% in a read).
The filtered reads were stored in FASTQ format and mapped with HISAT (v0.1.6-beta) to the bovine UMD3.1.1 reference genome with the parameters: --phred64 --sensitive --no-discordant --no-mixed -I 1 -X 1000.
We used StringTie (v1.0.4) to reconstruct transcripts, and used CuffCompare (v2.2.1) to compare reconstructed transcripts to reference annotation. We then selected  'u','i','o','j' class code types as novel transcripts, and used CPC (v0.9-r2) to predict coding potential of novel transcripts. Complete reference consisted of coding novel   transcripts and reference transcripts.
Clean reads were mapped to the complete reference using Bowtie2 (v2.2.5). Expression level of each gene was quantified with normalized FPKM (fragments per kilobase of exon per million mapped fragments) using RSEM (v1.2.12).
Genome_build: UMD 3.1.1
Supplementary_files_format_and_content: Tab-delimited text files include RPKM values for each transcript in different samples.

organism: Bos taurus

source_name: Eight-cell SCNT embryos

extract_protocol:
Pools of 8 eight-cell embryos were washed three times in RNase-free PBS solution, collected in a drop of PBS within 1 μL, and transferred into the lysis buffer immediately on ice. Samples were then centrifuged at 10000 rpm for 30 s at 4°C, and stored at -80°C.
Samples were thawed for cDNA synthesis using SuperScript® III (Thermo Fisher Scientific). After free primer removal and 3’ poly(A) tailing steps, cDNA was amplified by Ex Taq® HS (TaKaRa) and fragmented by Covaris S220 System. Short fragments are purified and resolved with EB buffer for end reparation and single nucleotide A (adenine) addition. After that, the short fragments are connected with adapters. The suitable fragments are selected for the PCR amplification. During the Quality Control steps, Agilent 2100 Bioanaylzer and ABI StepOnePlus Real-Time PCR System are used in quantification and qualification of the sample library. Sequencing libraries were made with the fragmented DNA using NEBNext Ultra DNA Library Prep Kit (New England Biolabs) for Illumina according to manufacturer’s instruction.

tag: breed

value: Holstein

tag: developmental stage

value: eight-cell

tag: cell/tissue type

value: SCNT embryos with KDM4E overexpression


title: SCNT_KDM4E_8-cell_replicate1


title: Abf1 ChIP-exo replicate3

description:
Replicate 3
Abf1_ChIP-exo_Filtered_PeakPairs.gff

value: GRF88, MATa his4-38, S288C background


title: Cbf1 ChIP-exo replicate4

description:
Replicate 4
Cbf1_ChIP-exo_Filtered_PeakPairs.gff


title: 2_2_control_T4h

source_name: broth culture, control, 4hr

value: 4 hour


title: Abf1 ChIP-exo replicate2

description:
Replicate 2
Abf1_ChIP-exo_Filtered_PeakPairs.gff


title: Abf1 ChIP-exo replicate1

description:
Replicate 1
Abf1_ChIP-exo_Filtered_PeakPairs.gff


title: 2_2_heat_T4h

source_name: broth culture, heat, 4hr


title: SCNT_8-cell_replicate1

value: SCNT embryos


title: SCNT_8-cell_replicate2


title: SCNT_8-cell_replicate3


title: Abf1 PBXO 100nm replicate3

description:
Replicate 3
Abf1_PB-exo_Filtered_PeakPairs.gff

value: Abf1-TAP (Genescript A00683, Lot 12D000473)


title: 2_2_heat_T3h

source_name: broth culture, heat, 3hr

value: 3 hour


title: IVF_8-cell_replicate2

source_name: Eight-cell IVF embryos

value: IVF embryos


title: 2_2_control_T3h

source_name: broth culture, control, 3hr


title: Abf1 PBXO 100nm replicate2

description:
Replicate 2
Abf1_PB-exo_Filtered_PeakPairs.gff


title: 2_2_control_T6h

source_name: broth culture, control, 6hr


title: Reb1 homo sapiens DNA PB-exo 1uM replicate2

description:
Replicate 2
Reb1_PB-exo_H_sapiens_DNA_Filtered_PeakPairs.gff

organism: Homo sapiens

value: Rap1-TAP (Genescript A00683, Lot 12D000473)

value: cell ine established from 69 year old female with breast cancer


title: 2_2_heat_T2h

source_name: broth culture, heat, 2hr

value: 2 hour


title: 2_2_heat_T5h

source_name: broth culture, heat, 5hr


title: P.vivax-Input

description:
P. vivax sample collection and chromatin preparation  Eight clinical P. vivax isolates were collected from malaria patients receiving treatment at clinics run by the Shoklo Malaria Research Unit on the North Western border of Thailand. Five milliliters of whole blood were collected in lithium heparin collection tubes by venepuncture. After leukocyte depletion using non-woven fabric filters (Antoshin Pte Ltd) these samples were cryopreserved in glycerolyte 57 solution (Baxter Pte Ltd) and stored in liquid nitrogen (Borlon et al., 2012). Frozen samples were thawed and matured ex vivo for 40 hours as described (Borlon et al., 2012; Russell et al., 2011). The resulting P. vivax schizonts cultures were crosslinked at 37˚C for 10 min in presence of 1% formaldehyde (Sigma F8775) and subsequently the reactions were quenched by 0.125 M glycine. The crosslinked RBCs were centrifuged at 200 g for 5 min, supernatants were removed and the RBC pellets snap-frozen in liquid nitrogen. The eight samples were thawed and pooled and nuclei isolated by releasing parasites from infected RBCs using 0.05% saponin followed by lysis in CLB. Nuclei were washed and snap-frozen in CLB supplemented with 50% glycerol. Preparation of sheared chromatin was performed as described above for P. falciparum.
P.vivax-HP1_over_P.vivax-Input.BedGraph.gz

organism: Plasmodium vivax

source_name: intraerythrocytic stage, schizont stage

value: Pool of eight clinical P. vivax isolates


title: Reb1 homo sapiens DNA PB-exo 1uM replicate1

description:
Replicate 1
Reb1_PB-exo_H_sapiens_DNA_Filtered_PeakPairs.gff


title: P.vivax-HP1


title: Cbf1 ChIP-exo replicate2

description:
Replicate 2
Cbf1_ChIP-exo_Filtered_PeakPairs.gff

value: Cbf1-TAP (Sigma i5006-100MG, Lot#SLBM2617V)


title: IVF_8-cell_replicate1


title: IVF_8-cell_replicate3


title: ago18(2)_young_panicle_Rep_1

status: Public on Jan 15 2018

city: Bangalore

first: Shivaprasad

last: Padubidri V.

address: GKVK Campus, Bellary road

department: Plant epigenetics

country: India

institute: National Center for Biological Sciences

data_processing:
3’ adapter (5’-TGGAATTCTCGGGTGCCAAGG-3’) was removed from sequenced reads using UEA small RNA workbench.
The small RNA reads of length 16nt-35nt filtered and were analyzed.
Supplementary_files_format_and_content: Text file containing 16nt-35nt long unique reads and their raw abundance after removal of adapter.

organism: Oryza sativa

source_name: young panicle

extract_protocol:
Total RNA from three different tissues, 4week old seedlings, young panicle and mature panicle of both wild-type and transgenic knock-down lines were extracted using Trizol (Invitrogen) reagent.
Size fractionation

tag: subspecies, cultivar

value: Rice, Indica, Pusa Basmati 1 (PB1)

value: young panicle


title: ago18(2)_mature_panicle_Rep_2

source_name: mature panicle

value: mature panicle


title: ago18(1)_young_panicle_Rep_2


title: ago18(2)_young_panicle_Rep_2


title: ago18(1)_seedling_Rep_1

source_name: Four weeks old seedlings

value: Four weeks old seedlings


title: ago18(1)_seedling_Rep_2


title: ago18(2)_seedling_Rep_1


title: ago18(2)_mature_panicle_Rep_1


title: WT_young_panicle_Rep_1

value: Wild type


title: WT_mature_panicle_Rep_1


title: WT_seedling_Rep_2


title: ago18(1)_mature_panicle_Rep_2


title: ago18(1)_young_panicle_Rep_1


title: WT_mature_panicle_Rep_2


title: WT_seedling_Rep_1


title: Primary T cell 960

city: Stanford

first: Ansuman

last: Satpathy

state: CA

address: 300 Pasteur Drive

department: Pathology

institute: Stanford University

description:
singles-C15-96
Transcript-indexed single-cell ATAC-seq
Open chromatin

data_processing:
For ATAC-seq data: adapter sequence trimming, mapping to hg19 using Bowtie2, and PCR duplicate removal using Picard Tools were performed. ATAC-seq peaks were called with MACS2 and reads in each peak were counted for each sample.
Genome_build: hg19 (GRCh37)
Supplementary_files_format_and_content: *.csv: Comma-separated text files; ATAC-seq counts tables; adapter trimmed, reads aligned, PCR duplicates removed, and reads in ATAC-seq peaks counted.

source_name: Primary T cell sorted from peripheral blood

growth_protocol: Isolated from PBMC.

extract_protocol:
Tn5 transposition.
Nextera

tag: cell type

value: Th17 T cell

tag: gender

value: male

tag: disease status

value: healthy


title: WT_young_panicle_Rep_2


title: Primary T cell 959

description:
singles-C15-95
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: 2_2_control_T2h

source_name: broth culture, control, 2hr


title: ago18(2)_seedling_Rep_2


title: Primary T cell 957

description:
singles-C15-93
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 952

description:
singles-C15-89
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 954

description:
singles-C15-90
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 951

description:
singles-C15-88
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 956

description:
singles-C15-92
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: ago18(1)_mature_panicle_Rep_1


title: Primary T cell 950

description:
singles-C15-87
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 949

description:
singles-C15-86
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 947

description:
singles-C15-84
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 958

description:
singles-C15-94
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 940

description:
singles-C15-78
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 944

description:
singles-C15-81
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 936

description:
singles-C15-74
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 946

description:
singles-C15-83
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 941

description:
singles-C15-79
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 935

description:
singles-C15-73
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 943

description:
singles-C15-80
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 953

description:
singles-C15-9
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 937

description:
singles-C15-75
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 945

description:
singles-C15-82
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 955

description:
singles-C15-91
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 939

description:
singles-C15-77
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 938

description:
singles-C15-76
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 931

description:
singles-C15-7
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 932

description:
singles-C15-70
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 933

description:
singles-C15-71
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 934

description:
singles-C15-72
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 930

description:
singles-C15-69
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 926

description:
singles-C15-65
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 925

description:
singles-C15-64
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 928

description:
singles-C15-67
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 927

description:
singles-C15-66
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 924

description:
singles-C15-63
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 929

description:
singles-C15-68
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 948

description:
singles-C15-85
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 923

description:
singles-C15-62
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 942

description:
singles-C15-8
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 921

description:
singles-C15-60
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 920

description:
singles-C15-6
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 918

description:
singles-C15-58
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 917

description:
singles-C15-57
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 919

description:
singles-C15-59
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 913

description:
singles-C15-53
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 914

description:
singles-C15-54
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 911

description:
singles-C15-51
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 916

description:
singles-C15-56
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 912

description:
singles-C15-52
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 908

description:
singles-C15-49
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 915

description:
singles-C15-55
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 909

description:
singles-C15-5
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 910

description:
singles-C15-50
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 902

description:
singles-C15-43
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 905

description:
singles-C15-46
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 907

description:
singles-C15-48
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 903

description:
singles-C15-44
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 899

description:
singles-C15-40
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 906

description:
singles-C15-47
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 898

description:
singles-C15-4
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 897

description:
singles-C15-39
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 901

description:
singles-C15-42
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 900

description:
singles-C15-41
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 895

description:
singles-C15-37
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 896

description:
singles-C15-38
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 922

description:
singles-C15-61
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 894

description:
singles-C15-36
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 893

description:
singles-C15-35
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 892

description:
singles-C15-34
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 891

description:
singles-C15-33
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 889

description:
singles-C15-31
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 904

description:
singles-C15-45
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 887

description:
singles-C15-3
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 890

description:
singles-C15-32
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 886

description:
singles-C15-29
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 888

description:
singles-C15-30
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 883

description:
singles-C15-26
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 882

description:
singles-C15-25
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 880

description:
singles-C15-23
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 876

description:
singles-C15-2
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 884

description:
singles-C15-27
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 871

description:
singles-C15-15
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 878

description:
singles-C15-21
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 875

description:
singles-C15-19
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 881

description:
singles-C15-24
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 874

description:
singles-C15-18
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 873

description:
singles-C15-17
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 885

description:
singles-C15-28
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 879

description:
singles-C15-22
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 877

description:
singles-C15-20
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 864

description:
singles-C14-96
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 863

description:
singles-C14-95
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 868

description:
singles-C15-12
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 867

description:
singles-C15-11
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 866

description:
singles-C15-10
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 869

description:
singles-C15-13
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 865

description:
singles-C15-1
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 862

description:
singles-C14-94
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 860

description:
singles-C14-92
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 857

description:
singles-C14-9
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 872

description:
singles-C15-16
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 858

description:
singles-C14-90
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 856

description:
singles-C14-89
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 870

description:
singles-C15-14
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 855

description:
singles-C14-88
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 854

description:
singles-C14-87
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 849

description:
singles-C14-82
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 852

description:
singles-C14-85
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 846

description:
singles-C14-8
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 850

description:
singles-C14-83
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 847

description:
singles-C14-80
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 848

description:
singles-C14-81
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 844

description:
singles-C14-78
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 843

description:
singles-C14-77
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 845

description:
singles-C14-79
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 841

description:
singles-C14-75
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 842

description:
singles-C14-76
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 861

description:
singles-C14-93
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 838

description:
singles-C14-72
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 839

description:
singles-C14-73
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 835

description:
singles-C14-7
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 859

description:
singles-C14-91
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 837

description:
singles-C14-71
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 834

description:
singles-C14-69
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 836

description:
singles-C14-70
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 833

description:
singles-C14-68
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 832

description:
singles-C14-67
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 831

description:
singles-C14-66
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 851

description:
singles-C14-84
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 828

description:
singles-C14-63
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 827

description:
singles-C14-62
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 829

description:
singles-C14-64
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 823

description:
singles-C14-59
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 825

description:
singles-C14-60
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 820

description:
singles-C14-56
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 819

description:
singles-C14-55
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 822

description:
singles-C14-58
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 840

description:
singles-C14-74
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 821

description:
singles-C14-57
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 824

description:
singles-C14-6
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 816

description:
singles-C14-52
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 817

description:
singles-C14-53
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 830

description:
singles-C14-65
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 807

description:
singles-C14-44
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 811

description:
singles-C14-48
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 809

description:
singles-C14-46
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 812

description:
singles-C14-49
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 810

description:
singles-C14-47
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 806

description:
singles-C14-43
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 813

description:
singles-C14-5
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 815

description:
singles-C14-51
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 814

description:
singles-C14-50
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 808

description:
singles-C14-45
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 804

description:
singles-C14-41
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 803

description:
singles-C14-40
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 853

description:
singles-C14-86
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 818

description:
singles-C14-54
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 802

description:
singles-C14-4
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 826

description:
singles-C14-61
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 801

description:
singles-C14-39
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 798

description:
singles-C14-36
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 799

description:
singles-C14-37
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 800

description:
singles-C14-38
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 797

description:
singles-C14-35
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 793

description:
singles-C14-31
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 792

description:
singles-C14-30
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 791

description:
singles-C14-3
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 794

description:
singles-C14-32
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 795

description:
singles-C14-33
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 790

description:
singles-C14-29
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 805

description:
singles-C14-42
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 789

description:
singles-C14-28
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 786

description:
singles-C14-25
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 785

description:
singles-C14-24
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 784

description:
singles-C14-23
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 788

description:
singles-C14-27
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 781

description:
singles-C14-20
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 787

description:
singles-C14-26
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 783

description:
singles-C14-22
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 778

description:
singles-C14-18
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 777

description:
singles-C14-17
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 779

description:
singles-C14-19
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 782

description:
singles-C14-21
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 780

description:
singles-C14-2
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 776

description:
singles-C14-16
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 775

description:
singles-C14-15
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 774

description:
singles-C14-14
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 773

description:
singles-C14-13
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 772

description:
singles-C14-12
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 796

description:
singles-C14-34
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 768

description:
singles-C13-96
Transcript-indexed single-cell ATAC-seq
Open chromatin

value: Naive T cell


title: Primary T cell 771

description:
singles-C14-11
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 766

description:
singles-C13-94
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 770

description:
singles-C14-10
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 765

description:
singles-C13-93
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 764

description:
singles-C13-92
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 762

description:
singles-C13-90
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 763

description:
singles-C13-91
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 761

description:
singles-C13-9
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 760

description:
singles-C13-89
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 757

description:
singles-C13-86
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 759

description:
singles-C13-88
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 758

description:
singles-C13-87
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 755

description:
singles-C13-84
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 756

description:
singles-C13-85
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 754

description:
singles-C13-83
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 769

description:
singles-C14-1
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 752

description:
singles-C13-81
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 753

description:
singles-C13-82
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 767

description:
singles-C13-95
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 750

description:
singles-C13-8
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 744

description:
singles-C13-74
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 745

description:
singles-C13-75
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 742

description:
singles-C13-72
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 749

description:
singles-C13-79
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 746

description:
singles-C13-76
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 748

description:
singles-C13-78
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 741

description:
singles-C13-71
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 747

description:
singles-C13-77
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 743

description:
singles-C13-73
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 739

description:
singles-C13-7
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 740

description:
singles-C13-70
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 751

description:
singles-C13-80
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 737

description:
singles-C13-68
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 734

description:
singles-C13-65
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 736

description:
singles-C13-67
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 738

description:
singles-C13-69
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 735

description:
singles-C13-66
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 733

description:
singles-C13-64
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 732

description:
singles-C13-63
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 731

description:
singles-C13-62
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 730

description:
singles-C13-61
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 729

description:
singles-C13-60
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 728

description:
singles-C13-6
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 726

description:
singles-C13-58
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 727

description:
singles-C13-59
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 723

description:
singles-C13-55
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 725

description:
singles-C13-57
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 722

description:
singles-C13-54
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 724

description:
singles-C13-56
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 719

description:
singles-C13-51
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 720

description:
singles-C13-52
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 718

description:
singles-C13-50
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 716

description:
singles-C13-49
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 713

description:
singles-C13-46
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 711

description:
singles-C13-44
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 715

description:
singles-C13-48
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 709

description:
singles-C13-42
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 703

description:
singles-C13-37
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 712

description:
singles-C13-45
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 721

description:
singles-C13-53
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 710

description:
singles-C13-43
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 717

description:
singles-C13-5
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 705

description:
singles-C13-39
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 714

description:
singles-C13-47
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 707

description:
singles-C13-40
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 696

description:
singles-C13-30
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 688

description:
singles-C13-23
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 689

description:
singles-C13-24
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 690

description:
singles-C13-25
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 701

description:
singles-C13-35
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 706

description:
singles-C13-4
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 702

description:
singles-C13-36
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 697

description:
singles-C13-31
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 694

description:
singles-C13-29
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 695

description:
singles-C13-3
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 692

description:
singles-C13-27
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 704

description:
singles-C13-38
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 700

description:
singles-C13-34
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 693

description:
singles-C13-28
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 691

description:
singles-C13-26
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 699

description:
singles-C13-33
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 698

description:
singles-C13-32
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 682

description:
singles-C13-18
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 684

description:
singles-C13-2
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 677

description:
singles-C13-13
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 687

description:
singles-C13-22
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 681

description:
singles-C13-17
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 680

description:
singles-C13-16
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 679

description:
singles-C13-15
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 685

description:
singles-C13-20
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 678

description:
singles-C13-14
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 683

description:
singles-C13-19
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 708

description:
singles-C13-41
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 686

description:
singles-C13-21
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 676

description:
singles-C13-12
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 664

description:
singles-C12-89
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 671

description:
singles-C12-95
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 662

description:
singles-C12-87
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 669

description:
singles-C12-93
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 665

description:
singles-C12-9
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 667

description:
singles-C12-91
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 670

description:
singles-C12-94
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 649

description:
singles-C12-75
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 660

description:
singles-C12-85
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 674

description:
singles-C13-10
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 656

description:
singles-C12-81
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 672

description:
singles-C12-96
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 657

description:
singles-C12-82
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 663

description:
singles-C12-88
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 661

description:
singles-C12-86
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 658

description:
singles-C12-83
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 655

description:
singles-C12-80
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 651

description:
singles-C12-77
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 652

description:
singles-C12-78
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 654

description:
singles-C12-8
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 648

description:
singles-C12-74
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 650

description:
singles-C12-76
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 659

description:
singles-C12-84
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 668

description:
singles-C12-92
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 653

description:
singles-C12-79
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 638

description:
singles-C12-65
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 643

description:
singles-C12-7
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 639

description:
singles-C12-66
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 634

description:
singles-C12-61
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 640

description:
singles-C12-67
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 637

description:
singles-C12-64
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 642

description:
singles-C12-69
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 635

description:
singles-C12-62
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 636

description:
singles-C12-63
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 644

description:
singles-C12-70
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 633

description:
singles-C12-60
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 641

description:
singles-C12-68
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 629

description:
singles-C12-57
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 632

description:
singles-C12-6
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 646

description:
singles-C12-72
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 675

description:
singles-C13-11
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 628

description:
singles-C12-56
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 627

description:
singles-C12-55
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 625

description:
singles-C12-53
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 645

description:
singles-C12-71
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 622

description:
singles-C12-50
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 631

description:
singles-C12-59
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 621

description:
singles-C12-5
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 624

description:
singles-C12-52
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 620

description:
singles-C12-49
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 616

description:
singles-C12-45
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 647

description:
singles-C12-73
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 666

description:
singles-C12-90
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 630

description:
singles-C12-58
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 614

description:
singles-C12-43
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 673

description:
singles-C13-1
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 613

description:
singles-C12-42
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 617

description:
singles-C12-46
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 618

description:
singles-C12-47
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 612

description:
singles-C12-41
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 609

description:
singles-C12-39
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 626

description:
singles-C12-54
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 619

description:
singles-C12-48
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 606

description:
singles-C12-36
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 608

description:
singles-C12-38
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 607

description:
singles-C12-37
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 611

description:
singles-C12-40
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 603

description:
singles-C12-33
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 604

description:
singles-C12-34
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 600

description:
singles-C12-30
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 601

description:
singles-C12-31
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 623

description:
singles-C12-51
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 599

description:
singles-C12-3
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 598

description:
singles-C12-29
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 596

description:
singles-C12-27
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 594

description:
singles-C12-25
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 592

description:
singles-C12-23
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 615

description:
singles-C12-44
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 593

description:
singles-C12-24
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 595

description:
singles-C12-26
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 597

description:
singles-C12-28
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 591

description:
singles-C12-22
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 605

description:
singles-C12-35
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 590

description:
singles-C12-21
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 587

description:
singles-C12-19
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 588

description:
singles-C12-2
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 582

description:
singles-C12-14
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 586

description:
singles-C12-18
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 602

description:
singles-C12-32
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 584

description:
singles-C12-16
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 579

description:
singles-C12-11
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 589

description:
singles-C12-20
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 583

description:
singles-C12-15
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 577

description:
singles-C12-1
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 574

description:
singles-C7-94
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin

value: CD4+ CD26+ T cell

value: Sezary syndrome

tag: patient


title: Primary T cell 575

description:
singles-C7-95
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 585

description:
singles-C12-17
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 571

description:
singles-C7-91
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 573

description:
singles-C7-93
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 578

description:
singles-C12-10
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 569

description:
singles-C7-9
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 567

description:
singles-C7-88
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 568

description:
singles-C7-89
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 564

description:
singles-C7-85
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 572

description:
singles-C7-92
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 565

description:
singles-C7-86
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 576

description:
singles-C7-96
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 566

description:
singles-C7-87
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 570

description:
singles-C7-90
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 581

description:
singles-C12-13
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 560

description:
singles-C7-81
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 561

description:
singles-C7-82
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 562

description:
singles-C7-83
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 563

description:
singles-C7-84
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 580

description:
singles-C12-12
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 552

description:
singles-C7-74
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 556

description:
singles-C7-78
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 557

description:
singles-C7-79
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 555

description:
singles-C7-77
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 554

description:
singles-C7-76
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 553

description:
singles-C7-75
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 558

description:
singles-C7-8
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 551

description:
singles-C7-73
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 548

description:
singles-C7-70
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 550

description:
singles-C7-72
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 559

description:
singles-C7-80
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 546

description:
singles-C7-69
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 545

description:
singles-C7-68
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 539

description:
singles-C7-62
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 540

description:
singles-C7-63
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 542

description:
singles-C7-65
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 538

description:
singles-C7-61
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 537

description:
singles-C7-60
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 536

description:
singles-C7-6
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 541

description:
singles-C7-64
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 535

description:
singles-C7-59
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 534

description:
singles-C7-58
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 533

description:
singles-C7-57
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 532

description:
singles-C7-56
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 549

description:
singles-C7-71
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 531

description:
singles-C7-55
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 529

description:
singles-C7-53
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 528

description:
singles-C7-52
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 547

description:
singles-C7-7
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 544

description:
singles-C7-67
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 524

description:
singles-C7-49
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 523

description:
singles-C7-48
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 521

description:
singles-C7-46
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 526

description:
singles-C7-50
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 520

description:
singles-C7-45
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 518

description:
singles-C7-43
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 519

description:
singles-C7-44
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 543

description:
singles-C7-66
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 517

description:
singles-C7-42
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 513

description:
singles-C7-39
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 514

description:
singles-C7-4
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 516

description:
singles-C7-41
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 512

description:
singles-C7-38
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 530

description:
singles-C7-54
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 511

description:
singles-C7-37
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 507

description:
singles-C7-33
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 505

description:
singles-C7-31
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 504

description:
singles-C7-30
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 508

description:
singles-C7-34
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 506

description:
singles-C7-32
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 522

description:
singles-C7-47
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 503

description:
singles-C7-3
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 501

description:
singles-C7-28
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 499

description:
singles-C7-26
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 515

description:
singles-C7-40
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 502

description:
singles-C7-29
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 497

description:
singles-C7-24
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 498

description:
singles-C7-25
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 495

description:
singles-C7-22
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 494

description:
singles-C7-21
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 493

description:
singles-C7-20
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 490

description:
singles-C7-18
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 489

description:
singles-C7-17
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 491

description:
singles-C7-19
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 488

description:
singles-C7-16
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 492

description:
singles-C7-2
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 509

description:
singles-C7-35
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin


title: Primary T cell 525

description:
singles-C7-5
CD4+ CD26+ T cells from Sezary patient 1.
Transcript-indexed single-cell ATAC-seq
Open chromatin