title: single EC derived from H1 hESC [EC_Batch2.105]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.105


title: single EC derived from H1 hESC [EC_Batch2.087]

status: Public on Jul 21 2016

type: SRA

city: Madison

first: Ning

last: Leng

state: WI

address: 330 N Orchard St

country: USA

institute: Morgridge Institute for Research

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.087

library_source: transcriptomic

data_processing:
Basecalls performed using CASAVA version 1.8.2
Sequencing reads were mapped to hg19 using bowtie 0.12.8
Gene expected counts were calculated using RSEM 1.2.3
Genome_build: hg19
Supplementary_files_format_and_content: Expected counts

molecule: total RNA

organism: Homo sapiens

source_name: endothelial cells differentiated from H1

growth_protocol: Growth can treatment conditions were listed in additional columns in the SAMPLE section

extract_protocol:
Single-cell suspentions were loaded onto a medium size (10-17 μm) C1 Single-Cell Auto Prep IFC (Fluidigm), and cell-loading script was performed according to the manufacturer’s instructions. Full-length single-cell cDNA libraries generated by the SMARTer PCR cDNA Synthesis kit (Clontech) and the Advantage 2 PCR kit (Clontech) performed in the C1 system.
For scRNA-seq, diluted single-cell cDNA libraries were fragmented and amplified using the Nextera XT DNA Sample Preparation Kit and the Nextera XT DNA Sample Preparation Index Kit (Illumina). Libraries were multiplexed at 24 libraries per lane, and single-end reads of 67-bp sequencing was performed on an Illumina HiSeq 2500 system. For bulk RNAseq, mRNA is isolated from purified 100 ng total RNA using oligo-dT beads. Isolated mRNA is fragmented in reverse transcription buffer with heat and then reverse-transcribed with SmartScribe reverse transcriptase using a random hexamer oligo.After reverse transcription, RNA is removed by RNaseA and RNaseH treatment. A partial Illumina 5′ adaptor is then ligated to the single stranded cDNA using T4 RNA ligase 1 and incubated overnight at 22°C. After purification, ligated cDNA is amplified by 18 cycles of PCR using oligos that contain full Illumina adaptors. Indexed cDNA libraries are pooled and sequenced on an Illumina HiSeq2500 with a single 51 bp read and a 10 bp index read.

tag: passage

value: passage 30-35

tag: facs sorting

value: FACS sorted by CD31+/CD34+


title: single EC derived from H1 hESC [EC_Batch2.102]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.102

treatment_protocol: Growth can treatment conditions were listed in additional columns in the SAMPLE section


title: single EC derived from H1 hESC [EC_Batch2.083]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.083


title: single EC derived from H1 hESC [EC_Batch2.080]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.080


title: single EC derived from H1 hESC [EC_Batch2.077]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.077


title: single EC derived from H1 hESC [EC_Batch2.111]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.111


title: single EC derived from H1 hESC [EC_Batch2.076]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.076


title: single EC derived from H1 hESC [EC_Batch2.075]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.075


title: single EC derived from H1 hESC [EC_Batch2.074]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.074


title: single EC derived from H1 hESC [EC_Batch2.073]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.073


title: single EC derived from H1 hESC [EC_Batch1.069]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.069


title: single EC derived from H1 hESC [EC_Batch2.098]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.098


title: single EC derived from H1 hESC [EC_Batch2.097]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.097


title: single EC derived from H1 hESC [EC_Batch2.104]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.104


title: single EC derived from H1 hESC [EC_Batch1.067]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.067


title: single EC derived from H1 hESC [EC_Batch1.065]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.065


title: single EC derived from H1 hESC [EC_Batch2.096]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.096


title: single EC derived from H1 hESC [EC_Batch2.092]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.092


title: single EC derived from H1 hESC [EC_Batch2.078]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.078


title: single EC derived from H1 hESC [EC_Batch1.063]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.063


title: single EC derived from H1 hESC [EC_Batch2.112]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.112


title: single EC derived from H1 hESC [EC_Batch1.062]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.062


title: single EC derived from H1 hESC [EC_Batch1.060]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.060


title: single EC derived from H1 hESC [EC_Batch2.088]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.088


title: single EC derived from H1 hESC [EC_Batch1.059]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.059


title: single EC derived from H1 hESC [EC_Batch2.081]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.081


title: single EC derived from H1 hESC [EC_Batch2.086]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.086


title: single EC derived from H1 hESC [EC_Batch1.057]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.057


title: single EC derived from H1 hESC [EC_Batch1.058]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.058


title: single EC derived from H1 hESC [EC_Batch2.085]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.085


title: single EC derived from H1 hESC [EC_Batch2.079]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.079


title: single EC derived from H1 hESC [EC_Batch1.053]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.053


title: single EC derived from H1 hESC [EC_Batch2.072]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.072


title: single EC derived from H1 hESC [EC_Batch1.050]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.050


title: single EC derived from H1 hESC [EC_Batch2.091]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch2.091


title: single EC derived from H1 hESC [EC_Batch1.049]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.049


title: single EC derived from H1 hESC [EC_Batch1.071]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.071


title: single EC derived from H1 hESC [EC_Batch1.046]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.046


title: single EC derived from H1 hESC [EC_Batch1.047]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.047


title: single EC derived from H1 hESC [EC_Batch1.048]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.048


title: single EC derived from H1 hESC [EC_Batch1.040]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.040


title: single EC derived from H1 hESC [EC_Batch1.038]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.038


title: single EC derived from H1 hESC [EC_Batch1.034]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.034


title: single EC derived from H1 hESC [EC_Batch1.064]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.064


title: single EC derived from H1 hESC [EC_Batch1.031]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.031


title: single EC derived from H1 hESC [EC_Batch1.036]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.036


title: single EC derived from H1 hESC [EC_Batch1.061]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.061


title: single EC derived from H1 hESC [EC_Batch1.070]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.070


title: single EC derived from H1 hESC [EC_Batch1.056]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.056


title: single EC derived from H1 hESC [EC_Batch1.051]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.051


title: single EC derived from H1 hESC [EC_Batch1.052]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.052


title: single EC derived from H1 hESC [EC_Batch1.068]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.068


title: single EC derived from H1 hESC [EC_Batch1.042]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.042


title: single EC derived from H1 hESC [EC_Batch1.055]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.055


title: single EC derived from H1 hESC [EC_Batch1.027]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.027


title: single EC derived from H1 hESC [EC_Batch1.022]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.022


title: single EC derived from H1 hESC [EC_Batch1.066]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.066


title: single EC derived from H1 hESC [EC_Batch1.044]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.044


title: single EC derived from H1 hESC [EC_Batch1.032]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.032


title: single EC derived from H1 hESC [EC_Batch1.020]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.020


title: single EC derived from H1 hESC [EC_Batch1.043]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.043


title: single EC derived from H1 hESC [EC_Batch1.054]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.054


title: single EC derived from H1 hESC [EC_Batch1.033]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.033


title: single EC derived from H1 hESC [EC_Batch1.037]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.037


title: single EC derived from H1 hESC [EC_Batch1.028]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.028


title: single EC derived from H1 hESC [EC_Batch1.026]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.026


title: single EC derived from H1 hESC [EC_Batch1.016]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.016


title: single EC derived from H1 hESC [EC_Batch1.023]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.023


title: single EC derived from H1 hESC [EC_Batch1.030]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.030


title: single EC derived from H1 hESC [EC_Batch1.011]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.011


title: single EC derived from H1 hESC [EC_Batch1.012]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.012


title: single EC derived from H1 hESC [EC_Batch1.017]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.017


title: single EC derived from H1 hESC [EC_Batch1.010]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.010


title: single EC derived from H1 hESC [EC_Batch1.019]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.019


title: single EC derived from H1 hESC [EC_Batch1.008]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.008


title: single EC derived from H1 hESC [EC_Batch1.014]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.014


title: single EC derived from H1 hESC [EC_Batch1.018]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.018


title: single EC derived from H1 hESC [EC_Batch1.005]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.005


title: single EC derived from H1 hESC [EC_Batch1.015]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.015


title: single EC derived from H1 hESC [EC_Batch1.009]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.009


title: single EC derived from H1 hESC [EC_Batch1.013]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.013


title: single EC derived from H1 hESC [EC_Batch1.021]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.021


title: single EC derived from H1 hESC [EC_Batch1.004]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.004


title: single EC derived from H1 hESC [EC_Batch1.003]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.003


title: single EC derived from H1 hESC [EC_Batch1.006]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.006


title: single EC derived from H1 hESC [EC_Batch1.002]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.002


title: single EC derived from H1 hESC [EC_Batch1.001]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.001


title: single DEC derived from H1 hESC [DEC_Batch2.144]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.144

source_name: definitive endoderm cell differentiated from H1

value: FACS sorted by CXCR4+


title: single DEC derived from H1 hESC [DEC_Batch2.141]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.141


title: single DEC derived from H1 hESC [DEC_Batch2.139]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.139


title: single DEC derived from H1 hESC [DEC_Batch2.138]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.138


title: single DEC derived from H1 hESC [DEC_Batch2.143]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.143


title: single DEC derived from H1 hESC [DEC_Batch2.137]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.137


title: single DEC derived from H1 hESC [DEC_Batch2.134]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.134


title: single DEC derived from H1 hESC [DEC_Batch2.131]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.131


title: single DEC derived from H1 hESC [DEC_Batch2.133]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.133


title: single DEC derived from H1 hESC [DEC_Batch2.130]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.130


title: single DEC derived from H1 hESC [DEC_Batch2.132]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.132


title: single EC derived from H1 hESC [EC_Batch1.007]

description:
H1 were seeded in E8 with BMP4 (5ng/ml) and Activin A (25ng/ml) for the first 2 days, then switched to supplement with VEGF and WNT for 3 days
sc_cell_type_ec.csv
EC_Batch1.007


title: single DEC derived from H1 hESC [DEC_Batch2.140]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.140


title: single DEC derived from H1 hESC [DEC_Batch2.125]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.125


title: single DEC derived from H1 hESC [DEC_Batch2.128]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.128


title: single DEC derived from H1 hESC [DEC_Batch2.127]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.127


title: single DEC derived from H1 hESC [DEC_Batch2.124]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.124


title: single DEC derived from H1 hESC [DEC_Batch2.118]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.118


title: single DEC derived from H1 hESC [DEC_Batch2.122]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.122


title: single DEC derived from H1 hESC [DEC_Batch2.121]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.121


title: single DEC derived from H1 hESC [DEC_Batch2.123]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.123


title: single DEC derived from H1 hESC [DEC_Batch2.116]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.116


title: single DEC derived from H1 hESC [DEC_Batch2.126]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.126


title: single DEC derived from H1 hESC [DEC_Batch2.117]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.117


title: single DEC derived from H1 hESC [DEC_Batch2.115]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.115


title: single DEC derived from H1 hESC [DEC_Batch2.142]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.142


title: single DEC derived from H1 hESC [DEC_Batch2.119]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.119


title: single DEC derived from H1 hESC [DEC_Batch2.114]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.114


title: single DEC derived from H1 hESC [DEC_Batch2.135]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.135


title: single DEC derived from H1 hESC [DEC_Batch2.112]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.112


title: single DEC derived from H1 hESC [DEC_Batch2.111]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.111


title: single DEC derived from H1 hESC [DEC_Batch2.136]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.136


title: single DEC derived from H1 hESC [DEC_Batch2.113]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.113


title: single DEC derived from H1 hESC [DEC_Batch2.109]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.109


title: single DEC derived from H1 hESC [DEC_Batch2.110]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.110


title: single DEC derived from H1 hESC [DEC_Batch2.108]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.108


title: single DEC derived from H1 hESC [DEC_Batch2.107]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.107


title: single DEC derived from H1 hESC [DEC_Batch2.129]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.129


title: single DEC derived from H1 hESC [DEC_Batch2.106]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.106


title: single DEC derived from H1 hESC [DEC_Batch2.103]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.103


title: single DEC derived from H1 hESC [DEC_Batch2.104]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.104


title: single DEC derived from H1 hESC [DEC_Batch2.120]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.120


title: single DEC derived from H1 hESC [DEC_Batch2.100]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.100


title: single DEC derived from H1 hESC [DEC_Batch2.098]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.098


title: single DEC derived from H1 hESC [DEC_Batch2.099]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.099


title: single DEC derived from H1 hESC [DEC_Batch2.093]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.093


title: single DEC derived from H1 hESC [DEC_Batch2.092]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.092


title: single DEC derived from H1 hESC [DEC_Batch2.090]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.090


title: single DEC derived from H1 hESC [DEC_Batch2.102]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.102


title: single DEC derived from H1 hESC [DEC_Batch2.095]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.095


title: single DEC derived from H1 hESC [DEC_Batch2.097]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.097


title: single DEC derived from H1 hESC [DEC_Batch2.091]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.091


title: single DEC derived from H1 hESC [DEC_Batch2.094]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.094


title: single DEC derived from H1 hESC [DEC_Batch2.089]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.089


title: single DEC derived from H1 hESC [DEC_Batch2.088]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.088


title: single DEC derived from H1 hESC [DEC_Batch2.087]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.087


title: single DEC derived from H1 hESC [DEC_Batch2.086]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.086


title: single DEC derived from H1 hESC [DEC_Batch2.084]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.084


title: single DEC derived from H1 hESC [DEC_Batch2.082]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.082


title: single DEC derived from H1 hESC [DEC_Batch2.085]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.085


title: single DEC derived from H1 hESC [DEC_Batch2.080]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.080


title: single DEC derived from H1 hESC [DEC_Batch2.105]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.105


title: single DEC derived from H1 hESC [DEC_Batch2.081]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.081


title: single DEC derived from H1 hESC [DEC_Batch2.079]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.079


title: single DEC derived from H1 hESC [DEC_Batch2.075]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.075


title: single DEC derived from H1 hESC [DEC_Batch2.078]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.078


title: single DEC derived from H1 hESC [DEC_Batch2.074]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.074


title: single DEC derived from H1 hESC [DEC_Batch2.101]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.101


title: single DEC derived from H1 hESC [DEC_Batch2.077]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.077


title: single DEC derived from H1 hESC [DEC_Batch2.071]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.071


title: single DEC derived from H1 hESC [DEC_Batch2.076]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.076


title: single DEC derived from H1 hESC [DEC_Batch2.096]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.096


title: single DEC derived from H1 hESC [DEC_Batch2.073]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.073


title: single DEC derived from H1 hESC [DEC_Batch1.066]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.066


title: single DEC derived from H1 hESC [DEC_Batch1.069]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.069


title: single DEC derived from H1 hESC [DEC_Batch2.072]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.072


title: single DEC derived from H1 hESC [DEC_Batch1.068]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.068


title: single DEC derived from H1 hESC [DEC_Batch2.083]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch2.083


title: single DEC derived from H1 hESC [DEC_Batch1.059]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.059


title: single DEC derived from H1 hESC [DEC_Batch1.060]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.060


title: single DEC derived from H1 hESC [DEC_Batch1.061]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.061


title: single DEC derived from H1 hESC [DEC_Batch1.058]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.058


title: single DEC derived from H1 hESC [DEC_Batch1.070]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.070


title: single DEC derived from H1 hESC [DEC_Batch1.056]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.056


title: single DEC derived from H1 hESC [DEC_Batch1.055]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.055


title: single DEC derived from H1 hESC [DEC_Batch1.057]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.057


title: single DEC derived from H1 hESC [DEC_Batch1.054]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.054


title: single DEC derived from H1 hESC [DEC_Batch1.052]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.052


title: single DEC derived from H1 hESC [DEC_Batch1.051]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.051


title: single DEC derived from H1 hESC [DEC_Batch1.050]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.050


title: single DEC derived from H1 hESC [DEC_Batch1.047]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.047


title: single DEC derived from H1 hESC [DEC_Batch1.048]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.048


title: single DEC derived from H1 hESC [DEC_Batch1.046]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.046


title: single DEC derived from H1 hESC [DEC_Batch1.049]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.049


title: single DEC derived from H1 hESC [DEC_Batch1.064]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.064


title: single DEC derived from H1 hESC [DEC_Batch1.044]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.044


title: single DEC derived from H1 hESC [DEC_Batch1.063]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.063


title: single DEC derived from H1 hESC [DEC_Batch1.042]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.042


title: single DEC derived from H1 hESC [DEC_Batch1.041]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.041


title: S oligo 2

city: Marseille

first: Anne-Marie

last: François-Bellan

address: 27 Bd Jean Moulin

department: Facute de Medecine

country: France

institute: CNRS-AMU

data_processing:
Paired-end reads (75bp) were aligned to the Rat reference genome (Rnor_6.0.80, Ensembl) using TopHat2 v2.209
Cuffflinks v2.2.1 was used to quantify mRNA level and fragment per kilobase per million of mapped reads (FPKM) were calculated
Genome_build: Rnor6.0
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each sample

organism: Rattus norvegicus

source_name: GH4C1 cells

growth_protocol: GH4C1 cell were grown in Ham-F12 medium supplemented with 15% horse serum and 2% fetal bovine serum

extract_protocol:
GH4C1 cell were fixed with 1% paraformaldehyde in PBS. Then nuclei were purified, lysed and sonicated. RNA pull-down was performed using two antisense DNA biotinylated oligonucleotide probes that target the lncRNA Neat1. Streptavidin-magnetic beads were added to hybridization reaction and complexes were captured by magnets. RNA was isolated using NucleoSpin®RNA XS (Macherey-Nagel).
Libraries were prepared according to instructions accompanying the Illumina TruSeq Stranded mRNA Sample Preparation kit.

tag: tissue

value: pituitary gland

tag: cell line

tag: cell type

value: somatolactotrope


title: single DEC derived from H1 hESC [DEC_Batch1.062]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.062


title: single DEC derived from H1 hESC [DEC_Batch1.040]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.040


title: single DEC derived from H1 hESC [DEC_Batch1.039]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.039


title: single DEC derived from H1 hESC [DEC_Batch1.036]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.036


title: single DEC derived from H1 hESC [DEC_Batch1.035]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.035


title: single DEC derived from H1 hESC [DEC_Batch1.034]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.034


title: single DEC derived from H1 hESC [DEC_Batch1.038]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.038


title: single DEC derived from H1 hESC [DEC_Batch1.032]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.032


title: single DEC derived from H1 hESC [DEC_Batch1.033]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.033


title: single DEC derived from H1 hESC [DEC_Batch1.053]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.053


title: single DEC derived from H1 hESC [DEC_Batch1.027]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.027


title: single DEC derived from H1 hESC [DEC_Batch1.028]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.028


title: single DEC derived from H1 hESC [DEC_Batch1.037]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.037


title: single DEC derived from H1 hESC [DEC_Batch1.031]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.031


title: single DEC derived from H1 hESC [DEC_Batch1.023]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.023


title: single DEC derived from H1 hESC [DEC_Batch1.026]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.026


title: single DEC derived from H1 hESC [DEC_Batch1.020]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.020


title: single DEC derived from H1 hESC [DEC_Batch1.021]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.021


title: single DEC derived from H1 hESC [DEC_Batch1.043]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.043


title: single DEC derived from H1 hESC [DEC_Batch1.029]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.029


title: single DEC derived from H1 hESC [DEC_Batch1.030]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.030


title: single DEC derived from H1 hESC [DEC_Batch1.024]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.024


title: single DEC derived from H1 hESC [DEC_Batch1.015]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.015


title: S oligo 1


title: single DEC derived from H1 hESC [DEC_Batch1.014]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.014


title: single DEC derived from H1 hESC [DEC_Batch1.019]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.019


title: single DEC derived from H1 hESC [DEC_Batch1.017]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.017


title: single DEC derived from H1 hESC [DEC_Batch1.013]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.013


title: single DEC derived from H1 hESC [DEC_Batch1.016]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.016


title: single DEC derived from H1 hESC [DEC_Batch1.012]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.012


title: single DEC derived from H1 hESC [DEC_Batch1.022]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.022


title: single DEC derived from H1 hESC [DEC_Batch1.010]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.010


title: single DEC derived from H1 hESC [DEC_Batch1.009]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.009


title: single DEC derived from H1 hESC [DEC_Batch1.004]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.004


title: single DEC derived from H1 hESC [DEC_Batch1.002]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.002


title: single H9 hESC cell [H9_Batch2.155]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.155

source_name: undifferentiated human embryonic stem cells

value: not sorted


title: single H9 hESC cell [H9_Batch2.153]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.153


title: single H9 hESC cell [H9_Batch2.154]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.154


title: single DEC derived from H1 hESC [DEC_Batch1.003]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.003


title: single DEC derived from H1 hESC [DEC_Batch1.025]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.025


title: single H9 hESC cell [H9_Batch2.150]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.150


title: single H9 hESC cell [H9_Batch2.151]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.151


title: single DEC derived from H1 hESC [DEC_Batch1.007]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.007


title: single H9 hESC cell [H9_Batch2.147]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.147


title: single DEC derived from H1 hESC [DEC_Batch1.005]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.005


title: single H9 hESC cell [H9_Batch2.143]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.143


title: single H9 hESC cell [H9_Batch2.142]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.142


title: single H9 hESC cell [H9_Batch2.145]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.145


title: single H9 hESC cell [H9_Batch2.141]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.141


title: single DEC derived from H1 hESC [DEC_Batch1.001]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.001


title: single H9 hESC cell [H9_Batch2.159]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.159


title: single H9 hESC cell [H9_Batch2.158]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.158


title: single H9 hESC cell [H9_Batch2.156]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.156


title: single H9 hESC cell [H9_Batch2.157]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.157


title: single H9 hESC cell [H9_Batch2.152]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.152


title: single H9 hESC cell [H9_Batch2.138]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.138


title: single H9 hESC cell [H9_Batch2.137]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.137


title: single H9 hESC cell [H9_Batch2.149]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.149


title: single H9 hESC cell [H9_Batch2.139]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.139


title: single H9 hESC cell [H9_Batch2.132]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.132


title: single H9 hESC cell [H9_Batch2.130]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.130


title: single H9 hESC cell [H9_Batch2.136]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.136


title: single H9 hESC cell [H9_Batch2.127]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.127


title: single DEC derived from H1 hESC [DEC_Batch1.011]

description:
H1 cells were seeded in E8 with BMP4 (5ng/ml), Activin A (25ng/ml) and CHIR99021 (1uM) for the first 2 days, then withdraw CHIR99021 for 3 days.
sc_cell_type_ec.csv
DEC_Batch1.011


title: single H9 hESC cell [H9_Batch2.124]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.124


title: single H9 hESC cell [H9_Batch2.125]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.125


title: single H9 hESC cell [H9_Batch2.146]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.146


title: single H9 hESC cell [H9_Batch2.144]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.144


title: single H9 hESC cell [H9_Batch2.140]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.140


title: single H9 hESC cell [H9_Batch2.121]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.121


title: single H9 hESC cell [H9_Batch2.135]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.135


title: single H9 hESC cell [H9_Batch2.134]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.134


title: single H9 hESC cell [H9_Batch2.128]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.128


title: single H9 hESC cell [H9_Batch2.129]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.129


title: single H9 hESC cell [H9_Batch2.126]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.126


title: single H9 hESC cell [H9_Batch2.113]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.113


title: single H9 hESC cell [H9_Batch2.133]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.133


title: single H9 hESC cell [H9_Batch2.111]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.111


title: single H9 hESC cell [H9_Batch2.110]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.110


title: single H9 hESC cell [H9_Batch2.131]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.131


title: single H9 hESC cell [H9_Batch2.120]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.120


title: single H9 hESC cell [H9_Batch2.107]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.107


title: single H9 hESC cell [H9_Batch2.122]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.122


title: single H9 hESC cell [H9_Batch2.104]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.104


title: single H9 hESC cell [H9_Batch2.103]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.103


title: single H9 hESC cell [H9_Batch2.101]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.101


title: single H9 hESC cell [H9_Batch2.102]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.102


title: single H9 hESC cell [H9_Batch2.119]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.119


title: single H9 hESC cell [H9_Batch2.118]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.118


title: single H9 hESC cell [H9_Batch2.116]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.116


title: single H9 hESC cell [H9_Batch2.117]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.117


title: single H9 hESC cell [H9_Batch2.115]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.115


title: single H9 hESC cell [H9_Batch2.148]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.148


title: single H9 hESC cell [H9_Batch2.112]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.112


title: single H9 hESC cell [H9_Batch2.109]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.109


title: single H9 hESC cell [H9_Batch2.098]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.098


title: single H9 hESC cell [H9_Batch2.099]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.099


title: single H9 hESC cell [H9_Batch2.100]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.100


title: single H9 hESC cell [H9_Batch2.108]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.108


title: single H9 hESC cell [H9_Batch2.123]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.123


title: single H9 hESC cell [H9_Batch2.093]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.093


title: single H9 hESC cell [H9_Batch2.092]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.092


title: single H9 hESC cell [H9_Batch2.106]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.106


title: single H9 hESC cell [H9_Batch2.105]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.105


title: single H9 hESC cell [H9_Batch2.091]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.091


title: single H9 hESC cell [H9_Batch2.114]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.114


title: single H9 hESC cell [H9_Batch2.096]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.096


title: single H9 hESC cell [H9_Batch2.089]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.089


title: single H9 hESC cell [H9_Batch2.088]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.088


title: single H9 hESC cell [H9_Batch2.087]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.087


title: single H9 hESC cell [H9_Batch2.085]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.085


title: single H9 hESC cell [H9_Batch1.162]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.162


title: single H9 hESC cell [H9_Batch2.094]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.094


title: single H9 hESC cell [H9_Batch2.095]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.095


title: single H9 hESC cell [H9_Batch2.090]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.090


title: single H9 hESC cell [H9_Batch1.160]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.160


title: single H9 hESC cell [H9_Batch2.086]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.086


title: single H9 hESC cell [H9_Batch1.084]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.084


title: single H9 hESC cell [H9_Batch1.083]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.083


title: single H9 hESC cell [H9_Batch1.078]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.078


title: single H9 hESC cell [H9_Batch1.077]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.077


title: single H9 hESC cell [H9_Batch1.075]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.075


title: single H9 hESC cell [H9_Batch1.081]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.081


title: single H9 hESC cell [H9_Batch1.072]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.072


title: single H9 hESC cell [H9_Batch1.076]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.076


title: single H9 hESC cell [H9_Batch1.066]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.066


title: single H9 hESC cell [H9_Batch1.074]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.074


title: single H9 hESC cell [H9_Batch1.068]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.068


title: single H9 hESC cell [H9_Batch1.161]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.161


title: single H9 hESC cell [H9_Batch1.080]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.080


title: single H9 hESC cell [H9_Batch1.062]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.062


title: single H9 hESC cell [H9_Batch1.061]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.061


title: single H9 hESC cell [H9_Batch1.060]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.060


title: single H9 hESC cell [H9_Batch1.063]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.063


title: single H9 hESC cell [H9_Batch2.097]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch2.097


title: single H9 hESC cell [H9_Batch1.058]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.058


title: single H9 hESC cell [H9_Batch1.079]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.079


title: single H9 hESC cell [H9_Batch1.073]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.073


title: single H9 hESC cell [H9_Batch1.056]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.056


title: single H9 hESC cell [H9_Batch1.065]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.065


title: single H9 hESC cell [H9_Batch1.069]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.069


title: single H9 hESC cell [H9_Batch1.067]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.067


title: single H9 hESC cell [H9_Batch1.071]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.071


title: single H9 hESC cell [H9_Batch1.070]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.070


title: single H9 hESC cell [H9_Batch1.082]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.082


title: single H9 hESC cell [H9_Batch1.053]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.053


title: single H9 hESC cell [H9_Batch1.046]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.046


title: single H9 hESC cell [H9_Batch1.048]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.048


title: single H9 hESC cell [H9_Batch1.047]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.047


title: single H9 hESC cell [H9_Batch1.057]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.057


title: single H9 hESC cell [H9_Batch1.064]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.064


title: single H9 hESC cell [H9_Batch1.043]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.043


title: single H9 hESC cell [H9_Batch1.038]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.038


title: single H9 hESC cell [H9_Batch1.039]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.039


title: single H9 hESC cell [H9_Batch1.040]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.040


title: single H9 hESC cell [H9_Batch1.055]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.055


title: single H9 hESC cell [H9_Batch1.059]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.059


title: PFC_NeuN+_H3K4me3_ChIPSeq_2

city: New York

first: Aslihan

last: Dincer

address: 1470 Madison Ave, 9th Floor Room 202

institute: Icahn School of Medicine at Mount Sinai

library_source: genomic

data_processing:
All sequencing libraries contained single-end 36-bp raw reads were mapped to the human genome (UCSC version hg19) using Bowtie (version 0.12.8).
Genome_build: hg19
Supplementary_files_format_and_content: Bed file with aligned reads

molecule: genomic DNA

source_name: 30 y old Male NeuN+

extract_protocol: Libraries were prepared according to Illumina's instructions accompanying the ? Kit (#). Briefly, ChIP DNA was end repaired (End-it DNA Repair kit, Epicentre) and A-tailed (Klenow Exo-minus; Epicentre). Adaptors (Genomic Adaptor Oligo Mix; Illumina, San Diego, CA) were ligated to the ChIP-DNA (Fast-Link kit, Epicentre) for PCR amplification and PCR products were gel extracted. Here, the region of 200 – 300 bps was cut out of the gel, containing the expected DNA fragment, consisting of the 150 bp mononucleosomal ChIP-DNA plus 100 bp adaptors. Between each step the samples were cleaned with column based PCR purification kits (Qiagen). The prepared DNA was run on bioanalyzer to determine concentration and size distribution of the library. Libraries were sequenced with the Genome Analyzer II (Illumina). All sequencing libraries contained single-end 36-bp raw reads were mapped to the human genome (UCSC version hg19) using Bowtie (version 0.12.8).

tag: tissue type

value: postmortem prefrontal cortex

tag: chip antibody


title: single H9 hESC cell [H9_Batch1.034]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.034


title: single H9 hESC cell [H9_Batch1.052]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.052


title: UT

city: Aurora

first: Brian

last: Graham

state: CO

department: Medicine

institute: University of Colorado Denver

data_processing:
Processing done using Galaxy online (http://usegalaxy.org)
FASTQ Groomer (sanger reads) to GRCm38/mm10 database
Tophat (v2.0.9) using Bowtie (v2.1.0.0) using GRCm38/mm10 database
Cufflinks (v0.0.6), with following attributes: Dbkey: mm10; Max intron length: 300000; Min Isoform Fraction: 0.1; Pre MRNA Fraction 0.15; No quartile normalization; No bias correction; No multi-read correct; Effective length correction; Reference annotation mm10 (UCSC dataset)
Genome_build: mm10
Supplementary_files_format_and_content: Tabular; FPKM transcription expression

organism: Mus musculus

extract_protocol:
Quiagen RNeasy Micro Kit (Quiagen Sciences, Valencia, CA)
Kapa Stranded mRNA-Seq kit (Kapa Biosystems, Wilmington, MA)

tag: strain background

tag: s. mansoni status

value: Unexposed

value: Tissue macrophages

tag: cell identification


title: single H9 hESC cell [H9_Batch1.051]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.051


title: UA

source_name: unexposed_alveolar macrophage

value: Alveolar macrophages


title: Lymphocyte_H3K4me3_ChIPSeq_2

source_name: nucleated blood cells, control subject 2

value: lymphocytes


title: single H9 hESC cell [H9_Batch1.044]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.044


title: single H9 hESC cell [H9_Batch1.045]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.045


title: single H9 hESC cell [H9_Batch1.042]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.042


title: single H9 hESC cell [H9_Batch1.041]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.041


title: single H9 hESC cell [H9_Batch1.054]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.054


title: single H9 hESC cell [H9_Batch1.050]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.050


title: single H9 hESC cell [H9_Batch1.036]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.036


title: single H9 hESC cell [H9_Batch1.031]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.031


title: single H9 hESC cell [H9_Batch1.049]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.049


title: IA

source_name: Schistosoma-exposed_alveolar macrophage

value: Exposed


title: single H9 hESC cell [H9_Batch1.037]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.037


title: PFC_NeuN+_H3K4me3_ChIPSeq_1

source_name: 28 y old Male NeuN+


title: single H9 hESC cell [H9_Batch1.035]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.035


title: SPL06TRGN_2Y

city: Chongqing

first: Qingzhu

last: Jia

address: Xinqiao

department: Department of Onoclogy

country: China

institute: XinQiao Hospital

data_processing:
Library strategy: T-cell repertoire sequencing
Basecall using IonTorrent built-in software
Raw repertoire reads were aligned to the mus musculus T-cell receptor beta-chain using MATLAB
V- and J-segment usage were determined according to sequence alignment
Abundance of unique T-cell clones were calculated based on aligned tcr nucleotide sequence/amino acid sequence
Supplementary_files_format_and_content: Saved as .MAT format including TCR NT/AA sequence, frequencies, V- and J-segment usage, and basic information of this sample

source_name: Non-labeled regulatory T-cell from spleen

extract_protocol:
Total RNA was extracted from trizol-lysed samples using the RNeasy Mini Kit according to standard protocol
A multiplex PCR system was introduced to amplify the CDR3 region of rearranged TCRB loci

treatment_protocol: TCRδCreERR26ZsGreen mice (4-week old) were treated with 3 doses of 1mg tamoxifen i.p. every other for long-term tracing day

value: spleen

value: T cell

tag: strain

tag: tracking

value: 1.5 years


title: TMP DAX 3

city: La Jolla

first: Katja

last: Lamia

state: California

address: 10550 North Torrey Pines Road

institute: The Scripps Research Institute

description: HEK293-DAX cells treated with 10µM TMP - Replicate 3

data_processing:
Illumina HiSeq 2000 sequencer with Illumina Casava1.8.2 software used for basecalling.
Single end, 100 bp-long reads from RNA-Seq experiments were aligned to the GRCh37.p13 human genome reference using SeqMan NGen 11.2.1 (DNAStar, Inc.).
The assembly data were then imported into ArrayStar with QSeq (DNAStar, Inc.) to quantify the gene expression levels.
The sequence counts were normalized to reads per kilobase per million (RPKM) after filtering out non-mRNA sequence features.
The statistical significance of the difference between the expression levels of a gene under different conditions was assessed using a Student’s t-test with the Benjamini-Hochberg multiple testing correction.
Genome_build: GRCh37.p13
Supplementary_files_format_and_content: excel, gene_counts and RPKM

source_name: HEK293-DAX TMP

growth_protocol: HEK293T-Rex and HEK293DAX cells were cultured in 12-well plates in High-Glucose Dulbecco’s Modified Eagle’s Medium (DMEM) supplemented with glutamine, penicillin/streptomycin and 10% fetal bovine serum.

extract_protocol: Cells were harvested, and RNA was extracted using the RNeasy Mini Kit (Qiagen). Total RNA was quantified using NanoDrop (ND-1000)

treatment_protocol: Cells in wells were treated with DMSO, 1µM Tg, or 10µM 132, 263, 147, or TMP from 1000x DMSO stock solutions (0.1% final DMSO concentration). Cells were incubated with compounds for 6 hours at 37ºC.

value: kidney

tag: treatment

value: Trimethoprim (TMP)


title: single H9 hESC cell [H9_Batch1.029]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.029

value: passage 30-35


title: TMP DAX 1

description: HEK293-DAX cells treated with 10µM TMP - Replicate 1


title: Lymphocyte_H3K4me3_ChIPSeq_3

source_name: nucleated blood cells, control subject 3


title: single H9 hESC cell [H9_Batch1.028]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.028


title: IT


title: Lymphocyte_Input_ChIPSeq

source_name: nucleated blood cells, input

value: input


title: SPL06TCGN_2Y

source_name: Non-labeled conventional T-cell from spleen


title: single H9 hESC cell [H9_Batch1.033]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.033


title: Vh DAX 1

description: HEK293-DAX cells treated with DMSO (Vh) - Replicate 1

source_name: HEK293-DAX DMSO (Vh)

value: DMSO


title: single H9 hESC cell [H9_Batch1.032]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.032


title: Lymphocyte_H3K4me3_ChIPSeq_1

source_name: nucleated blood cells, control subject 1


title: TMP DAX 2

description: HEK293-DAX cells treated with 10µM TMP - Replicate 2


title: single H9 hESC cell [H9_Batch1.030]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.030


title: SPL06TRGP_2Y

source_name: Labeled regulatory T-cell from spleen


title: single H9 hESC cell [H9_Batch1.025]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.025


title: single H9 hESC cell [H9_Batch1.026]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.026


title: 147 T-REX 2

description: HEK293T-Rex cells treated with 10µM compound 147 - Replicate 2

source_name: HEK293T-Rex Comp. 147

value: Compound 147


title: SPL06TCGP_2Y

source_name: Labeled conventional T-cell from spleen


title: SPL05TCGP_2Y


title: single H9 hESC cell [H9_Batch1.023]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.023


title: Vh DAX 2

description: HEK293-DAX cells treated with DMSO (Vh) - Replicate 2


title: SPL04TRGN_2Y


title: 263 T-REX 3

description: HEK293T-Rex cells treated with 10µM compound 263 - Replicate 3

source_name: HEK293T-Rex Comp. 263

value: Compound 263


title: single H9 hESC cell [H9_Batch1.022]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.022

source_name: undifferentiated human embryonic stem cells

value: not sorted


title: SPL05TRGN_2Y


title: 147 T-REX 3

description: HEK293T-Rex cells treated with 10µM compound 147 - Replicate 3


title: SPL05TCGN_2Y


title: single H9 hESC cell [H9_Batch1.020]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.020


title: single H9 hESC cell [H9_Batch1.024]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.024


title: 263 T-REX 1

description: HEK293T-Rex cells treated with 10µM compound 263 - Replicate 1


title: single H9 hESC cell [H9_Batch1.019]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.019


title: single H9 hESC cell [H9_Batch1.027]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.027


title: Vh DAX 3

description: HEK293-DAX cells treated with DMSO (Vh) - Replicate 3


title: SPL05TRGP_2Y


title: SPL03TRGP_2Y


title: SPL04TRGP_2Y


title: 263 T-REX 2

description: HEK293T-Rex cells treated with 10µM compound 263 - Replicate 2


title: SPL04TCGN_2Y


title: SPL04TCGP_2Y


title: single H9 hESC cell [H9_Batch1.018]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.018


title: 132 T-REX 2

description: HEK293T-Rex cells treated with 10µM compound 132 - Replicate 2

source_name: HEK293T-Rex Comp. 132

value: Compound 132


title: 132 T-REX 3

description: HEK293T-Rex cells treated with 10µM compound 132 - Replicate 3


title: 147 T-REX 1

description: HEK293T-Rex cells treated with 10µM compound 147 - Replicate 1


title: 132 T-REX 1

description: HEK293T-Rex cells treated with 10µM compound 132 - Replicate 1


title: single H9 hESC cell [H9_Batch1.017]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.017


title: single H9 hESC cell [H9_Batch1.021]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.021


title: single H9 hESC cell [H9_Batch1.016]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.016


title: SPL03TCGP_2Y


title: SPL03TRGN_2Y


title: Tg T-REX 3

description: HEK293T-Rex cells treated with 1µM Thapsigargin - Replicate 3

source_name: HEK293T-Rex Tg

value: Thapsigargin


title: SPL03TCGN_2Y


title: single H9 hESC cell [H9_Batch1.015]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.015


title: single H9 hESC cell [H9_Batch1.014]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.014


title: single H9 hESC cell [H9_Batch1.013]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.013


title: Tg T-REX 2

description: HEK293T-Rex cells treated with 1µM Thapsigargin - Replicate 2


title: SPL02TRGP_2Y


title: Vh T-REX 3

description: HEK293T-Rex cells treated with DMSO (Vh) - Replicate 3

source_name: HEK293T-Rex DMSO (Vh)


title: single H9 hESC cell [H9_Batch1.012]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.012


title: SPL02TRGN_2Y


title: Vh T-REX 2

description: HEK293T-Rex cells treated with DMSO (Vh) - Replicate 2


title: single H9 hESC cell [H9_Batch1.011]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.011


title: Vh T-REX 1

description: HEK293T-Rex cells treated with DMSO (Vh) - Replicate 1


title: SPL01TRGP_2Y


title: SPL02TCGN_2Y


title: Placenta_BGI

city: Shanghai

first: Leming

last: Shi

address: 2005 Songhu Road

department: School of Life Sciences

institute: Fudan University

description: Illumina HiSeq 2000 (BGI)

data_processing:
Trim low quality reads and adapters using Trimmomatic software
Mapping trimmed reads to human reference genome using TopHat software
Transcript assembly and quantification using Cufflinks software
Genome_build: GRCh37
Supplementary_files_format_and_content: Table-delimited text files include FPKM value of 156600 transcripts across 28 samples

source_name: Tissue

growth_protocol: Donor E is a fetus, donor A and B were adults

extract_protocol:
Total RNA was extracted from tissue by using the miRNeasy Mini Kit (Qiagen, Valencia, CA, USA) according to the manufacturer’s protocol
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: All the samples were histologically confirmed to be normal

value: Placenta

tag: donor

value: Human (donor E)


title: single H9 hESC cell [H9_Batch1.010]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.010


title: single H9 hESC cell [H9_Batch1.009]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.009


title: SPL01TCGP_2Y


title: single H9 hESC cell [H9_Batch1.008]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.008


title: SPL02TCGP_2Y


title: SPL01TRGN_2Y


title: Liver_BGI

description: Illumina HiSeq 2000 (BGI)

value: Liver


title: single H9 hESC cell [H9_Batch1.007]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.007


title: PPL06TRGP_2Y

source_name: Labeled regulatory T-cell from Peyer's Patch

value: Peyer's Patch


title: single H9 hESC cell [H9_Batch1.006]

description:
H9 cells were routinely maintained at the undifferentiated state in E8 medium on Matrigel
sc_cell_type_ec.csv
H9_Batch1.006


title: Gut_BGI

description: Illumina HiSeq 2000 (BGI)

value: Gut


title: Tg T-REX 1

description: HEK293T-Rex cells treated with 1µM Thapsigargin - Replicate 1


title: PPL06TRGN_2Y

source_name: Non-labeled regulatory T-cell from Peyer's Patch

value: T cell


title: Brain_BGI

description: Illumina HiSeq 2000 (BGI)

value: Brain


title: Heart_BGI

description: Illumina HiSeq 2000 (BGI)

value: Heart


title: PPL06TCGP_2Y

source_name: Labeled conventional T-cell from Peyer's Patch

value: 1.5 years