title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18219 cell 02


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18219 cell 01

status: Public on Sep 08 2017

type: SRA

city: Cambridge

first: Evangelia

last: Diamanti

address: Wellcome Trust / MRC Building, Hills Road

department: Haematology

country: United Kingdom

institute: University of Cambridge

library_source: transcriptomic

data_processing:
RNA-seq reads were aligned to mm10 using GSNAP (version 2015-09-29) with parameters (-B 5 -t 24 -n 1 -Q -N 1).
Reads in features were counted with htseq-count (HTSeq version 0.5.3p3) with the parameter (-s no).
Genome_build: mm10
Supplementary_files_format_and_content: counts

molecule: total RNA

organism: Mus musculus

source_name: Bone marrow

extract_protocol:
Bone marrow cells were collected from the femurs and tibiae of 7 week old mice.
Cells were stained with antibodies and single cells sorted using a FACS Influx5 (BD Biosciences)
Cells were sorted directly into individual wells of 96-well PCR plate containing lysis buffer.
Single-cell RNA-sequencing was performed as previously described (Picelli et al (2014) Nat. protocols 9:171)
Pooled libraries were run on an Illumina HiSeq 4000 sequencer.
RNA libraries were prepared for sequencing using Illumina XT DNA preparation kit

tag: cell type

value: Lymphoid-primed multipotent progenitor (LMPP, Lin- Sca-1+ c-Kit+ Flt3hi IL-7Ra- B220-)

tag: strain

tag: age

value: 7 weeks

tag: genotype


title: 46hpi_P16

first: Daniel

middle: E.

last: Neafsey

state: MA

address: 415 Main St.

country: USA

institute: Broad Institute

description:
TAGGCATG_P16
46hpi.raw.tsv
46hpi.normalized.tsv

data_processing:
Illumina NextSeq standard basecalling platform
Well barcode demultiplexing. Custom python script. Separates wells in 384-well plate
Unique molecular identifier demultiplexing. Custom python script. Counts reads from same mRNA molecule as only 1
Transcript alignment with bwa aln v0.7.10 allowing 4 mismatches in seed sequence and rest of sequence.
Discard reads with polyA tails (> 20 As in a row)
Additional filtering: Filter reads for rRNA. Remove samples with fewer than 300 reads. Remove genes that were found in <20 samples.
Generate normalized abundances with edgeR v3.14.0
Genome_build: PlasmoDB Plasmodium falciparum 3D7 transcript v29
Supplementary_files_format_and_content: 38hpi.raw.tsv - 38hpi raw read counts in matrix format, where rows are samples and columns are genes
Supplementary_files_format_and_content: 42hpi.raw.tsv - 42hpi raw read counts in matrix format, where rows are samples and columns are genes
Supplementary_files_format_and_content: 46hpi.raw.tsv - 46hpi raw read counts in matrix format, where rows are samples and columns are genes
Supplementary_files_format_and_content: 38hpi.filtered.tsv - 38hpi filtered read counts in matrix format, where rows are samples and columns are genes
Supplementary_files_format_and_content: 42hpi.filtered.tsv - 42hpi filtered read counts in matrix format, where rows are samples and columns are genes
Supplementary_files_format_and_content: 46hpi.filtered.tsv - 46hpi filtered read counts in matrix format, where rows are samples and columns are genes
Supplementary_files_format_and_content: 38hpi.normalized.tsv - 38hpi normalized read counts in matrix format, where rows are samples and columns are genes
Supplementary_files_format_and_content: 42hpi.normalized.tsv - 42hpi normalized read counts in matrix format, where rows are samples and columns are genes
Supplementary_files_format_and_content: 46hpi.normalized.tsv - 46hpi normalized read counts in matrix format, where rows are samples and columns are genes
Supplementary_files_format_and_content: all.normalized.tsv - all normalized read counts from all time points in matrix forrmat, where rows are samples and columns are genes

molecule: polyA RNA

organism: Plasmodium falciparum NF54

source_name: Single cell sorted Plasmodium infected human erythrocytes

growth_protocol: P.falciparum cell culture was performed as described previously (REF). Culture media consisted of RPMI-1640 supplemented with 25 mM HEPES, 100 μM hypoxanthine, 24 mM sodium bicarbonate, and gentamicin (all from Sigma-Aldrich). Serum media was generated by additional supplementation of 10% O+ human serum (The Interstate Companies) while serum-free medium was generated by additional supplementation of 0.39% fatty acid-free BSA, 30 μM oleic acid, and 30 μM palmitic acid (all from Sigma-Aldrich). To generate serum-free media supplemented with 20 μM LysoPC, LysoPC (Avanti Polar Lipids) was dissolved in ethanol and dried on culture dishes prior to culture addition. All cell cultures were maintained in a 5% CO2/1 % O2 and 95 % N2 gas mixture (Med-Tech Gases). All experiments used a clone of the Pf2004/164TdTomato P.falciparum line 14, which requires addition of 4 nM WR99210 (Jacobus Pharmaceuticals).

extract_protocol:
We used an optimized version of Single Cell RNA Barcoding and Sequencing 7 (SCRB-seq; Soumillon et al, 2014), further reducing the reverse transcriptase reaction volume. In brief, poly(A)+ mRNA from flow-sorted single Plasmodium infected erythrocytes were converted to cDNA, decorated with universal adapters, well barcodes, and unique molecular identifiers (UMIs), using a template-switching reverse transcriptase. Then, cDNA from multiple cells was pooled, amplified, and prepped for multiplexed sequencing using a transposon-based fragmentation method, enriching for 3’ ends and preserving strand information.
Nextera XT

treatment_protocol: Parasite cultures were sorbitol-synchronized (Sigma-Aldrich) as described previously 21 to a 4-hour cycle window using 4 consecutive treatments across two growth cycles. At 28-32 hour post invasion, parasites were washed in RPMI/mFA media and plated with or without LysoPC. At 4, 8, and 12 hours post induction, cells were stained with Vybrant DyeCycle Violet (Life Technologies) in HBSS (Thermo Fisher Scientific). Stained cells were pelleted and resuspended in phenol red-free PBS supplemented with 0.3% RNaseOUT (Life Technologies). Collection Twin.tec PCR 384-well plates (Eppendorf) were prepared by addition of cell lysis buffer to each well; lysis buffer consisted of nuclease-free water (Thermo Fisher Scientific) supplemented with 0.2% HF buffer (New England Biolabs). Single Vybrant Dye Cycle Violet-positive cells were sorted using a Beckman Coulter MoFlo Astrios EQ. At each time point, 48 cells from the non-induced culture (+LysoPC) and 336 cells from the induced culture (-LysoPC) were sorted into the collection plate and snap frozen on dry ice. Cultures were maintained for an additional two cycles for parasitemia and gametocytemia measurement. The media of both non-induced and induced cultures was replaced with RPMI/serum 12 hours post induction and daily thereafter.

tag: time point

tag: induced

value: Uninduced


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 48


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 47


title: 46hpi_P15

description:
TAGGCATG_P15
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_P14

description:
TAGGCATG_P14
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 46


title: 46hpi_P13

description:
TAGGCATG_P13
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 45


title: 46hpi_P11

description:
TAGGCATG_P11
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_P12

description:
TAGGCATG_P12
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 44


title: 46hpi_P10

description:
TAGGCATG_P10
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 42


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 39


title: 46hpi_O7

description:
TAGGCATG_O7
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 38


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 40


title: 46hpi_P17

description:
TAGGCATG_P17
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O6

description:
TAGGCATG_O6
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O8

description:
TAGGCATG_O8
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 34


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 36


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 35


title: 46hpi_O4

description:
TAGGCATG_O4
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O3

description:
TAGGCATG_O3
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O24

description:
TAGGCATG_O24
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 33


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 32


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 43


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 31


title: 46hpi_O23

description:
TAGGCATG_O23
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O22

description:
TAGGCATG_O22
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_P1

description:
TAGGCATG_P1
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 41


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 29


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 30


title: 46hpi_O9

description:
TAGGCATG_O9
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O20

description:
TAGGCATG_O20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O2

description:
TAGGCATG_O2
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 37


title: 46hpi_O5

description:
TAGGCATG_O5
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 28


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 27


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 26


title: 46hpi_O19

description:
TAGGCATG_O19
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 25


title: 46hpi_O18

description:
TAGGCATG_O18
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O17

description:
TAGGCATG_O17
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 23


title: 46hpi_O15

description:
TAGGCATG_O15
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O16

description:
TAGGCATG_O16
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 22


title: 46hpi_O13

description:
TAGGCATG_O13
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O21

description:
TAGGCATG_O21
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O12

description:
TAGGCATG_O12
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O11

description:
TAGGCATG_O11
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 18


title: 46hpi_O10

description:
TAGGCATG_O10
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 17


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 19


title: 46hpi_N9

description:
TAGGCATG_N9
46hpi.raw.tsv
46hpi.normalized.tsv

value: Induced


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 15


title: 46hpi_N8

description:
TAGGCATG_N8
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_O1

description:
TAGGCATG_O1
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 16


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 14


title: 46hpi_N7

description:
TAGGCATG_N7
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 24


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 12


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 13


title: 46hpi_O14

description:
TAGGCATG_O14
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 11


title: 46hpi_N4

description:
TAGGCATG_N4
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 10


title: 46hpi_N5

description:
TAGGCATG_N5
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N3

description:
TAGGCATG_N3
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N24

description:
TAGGCATG_N24
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 21


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 09


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 08


title: 46hpi_N23

description:
TAGGCATG_N23
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N22

description:
TAGGCATG_N22
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 07


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 06


title: 46hpi_N6

description:
TAGGCATG_N6
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 05


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 04


title: 46hpi_N20

description:
TAGGCATG_N20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N2

description:
TAGGCATG_N2
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N19

description:
TAGGCATG_N19
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 01


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 48


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 03


title: 46hpi_N18

description:
TAGGCATG_N18
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N17

description:
TAGGCATG_N17
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 02


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 47


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 46


title: 46hpi_N16

description:
TAGGCATG_N16
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N12

description:
TAGGCATG_N12
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N11

description:
TAGGCATG_N11
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 45


title: 46hpi_N13

description:
TAGGCATG_N13
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 43


title: 46hpi_N14

description:
TAGGCATG_N14
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N21

description:
TAGGCATG_N21
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 42


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 41


title: 46hpi_M9

description:
TAGGCATG_M9
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N1

description:
TAGGCATG_N1
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_M8

description:
TAGGCATG_M8
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 40


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 39


title: 46hpi_M7

description:
TAGGCATG_M7
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 38


title: 46hpi_N15

description:
TAGGCATG_N15
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_M6

description:
TAGGCATG_M6
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3del/del mouse 18217 cell 20


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 36


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 37


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 44


title: 46hpi_M24

description:
TAGGCATG_M24
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 35


title: 46hpi_M4

description:
TAGGCATG_M4
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 33


title: 46hpi_M5

description:
TAGGCATG_M5
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_M3

description:
TAGGCATG_M3
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 32


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 34


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 31


title: 46hpi_M21

description:
TAGGCATG_M21
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_M22

description:
TAGGCATG_M22
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_N10

description:
TAGGCATG_N10
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_M23

description:
TAGGCATG_M23
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 30


title: 46hpi_M20

description:
TAGGCATG_M20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_M2

description:
TAGGCATG_M2
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 28


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 26


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 27


title: 46hpi_M18

description:
TAGGCATG_M18
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_M19

description:
TAGGCATG_M19
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 25


title: 46hpi_M17

description:
TAGGCATG_M17
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_M16

description:
TAGGCATG_M16
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 23


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 24


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 22


title: 46hpi_M14

description:
TAGGCATG_M14
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 20


title: 46hpi_M15

description:
TAGGCATG_M15
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 21


title: 46hpi_M12

description:
TAGGCATG_M12
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 18


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 19


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 17


title: 46hpi_M1

description:
TAGGCATG_M1
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 16


title: 46hpi_M10

description:
TAGGCATG_M10
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 29


title: 46hpi_M11

description:
TAGGCATG_M11
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 15


title: 46hpi_L8

description:
TAGGCATG_L8
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L9

description:
TAGGCATG_L9
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L7

description:
TAGGCATG_L7
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L6

description:
TAGGCATG_L6
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L5

description:
TAGGCATG_L5
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 12


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 11


title: 46hpi_M13

description:
TAGGCATG_M13
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L4

description:
TAGGCATG_L4
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L3

description:
TAGGCATG_L3
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 10


title: 46hpi_L24

description:
TAGGCATG_L24
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 13


title: 46hpi_L22

description:
TAGGCATG_L22
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 07


title: 46hpi_L23

description:
TAGGCATG_L23
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L21

description:
TAGGCATG_L21
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 06


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 08


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 05


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 09


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 04


title: 46hpi_L20

description:
TAGGCATG_L20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L2

description:
TAGGCATG_L2
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 03


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 14


title: 46hpi_L18

description:
TAGGCATG_L18
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 02


title: 46hpi_L17

description:
TAGGCATG_L17
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 48


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18220 cell 01


title: 46hpi_L19

description:
TAGGCATG_L19
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 47


title: 46hpi_L15

description:
TAGGCATG_L15
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 45


title: 46hpi_L13

description:
TAGGCATG_L13
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L12

description:
TAGGCATG_L12
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L14

description:
TAGGCATG_L14
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L11

description:
TAGGCATG_L11
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 43


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 44


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 42


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 41


title: 46hpi_L1

description:
TAGGCATG_L1
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 39


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 40


title: 46hpi_K7

description:
TAGGCATG_K7
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K8

description:
TAGGCATG_K8
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K6

description:
TAGGCATG_K6
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K5

description:
TAGGCATG_K5
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K9

description:
TAGGCATG_K9
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 37


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 35


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 38


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 34


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 36


title: 46hpi_K4

description:
TAGGCATG_K4
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 46


title: 46hpi_L10

description:
TAGGCATG_L10
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 33


title: 46hpi_K24

description:
TAGGCATG_K24
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K3

description:
TAGGCATG_K3
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 32


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 31


title: 46hpi_K23

description:
TAGGCATG_K23
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K22

description:
TAGGCATG_K22
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_L16

description:
TAGGCATG_L16
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K20

description:
TAGGCATG_K20
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 29


title: 46hpi_K21

description:
TAGGCATG_K21
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 28


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 26


title: 46hpi_K19

description:
TAGGCATG_K19
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K2

description:
TAGGCATG_K2
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K17

description:
TAGGCATG_K17
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 24


title: 46hpi_K18

description:
TAGGCATG_K18
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 22


title: 46hpi_K15

description:
TAGGCATG_K15
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K16

description:
TAGGCATG_K16
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K13

description:
TAGGCATG_K13
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K14

description:
TAGGCATG_K14
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 20


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 30


title: 46hpi_K12

description:
TAGGCATG_K12
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 18


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 19


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 17


title: 46hpi_K10

description:
TAGGCATG_K10
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K1

description:
TAGGCATG_K1
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 16


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 27


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 15


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 14


title: 46hpi_J9

description:
TAGGCATG_J9
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_J8

description:
TAGGCATG_J8
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 23


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 25


title: 46hpi_J7

description:
TAGGCATG_J7
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 12


title: 46hpi_J5

description:
TAGGCATG_J5
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 21


title: 46hpi_J4

description:
TAGGCATG_J4
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 13


title: 46hpi_J3

description:
TAGGCATG_J3
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_J24

description:
TAGGCATG_J24
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_J23

description:
TAGGCATG_J23
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_K11

description:
TAGGCATG_K11
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_J22

description:
TAGGCATG_J22
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 10


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 09


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 07


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 08


title: 46hpi_J21

description:
TAGGCATG_J21
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 11


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 06


title: 46hpi_J19

description:
TAGGCATG_J19
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 04


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 05


title: 46hpi_J6

description:
TAGGCATG_J6
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_J20

description:
TAGGCATG_J20
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 03


title: 46hpi_J18

description:
TAGGCATG_J18
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_J16

description:
TAGGCATG_J16
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 02


title: 46hpi_J15

description:
TAGGCATG_J15
46hpi.raw.tsv
46hpi.normalized.tsv


title: Lymphoid-primed multipotent progenitor (LMPP) Mbd3flox/flox mouse 18218 cell 01


title: 46hpi_J14

description:
TAGGCATG_J14
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 34

value: B-biased lymphoid progenitor (BLP, Lin- Sca-1+ c-Kit+ Flt3hi IL-7Ra+ Ly6D+ B220-)


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 36


title: 46hpi_J13

description:
TAGGCATG_J13
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 33


title: 46hpi_J12

description:
TAGGCATG_J12
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 35


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 31


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 29


title: 46hpi_J10

description:
TAGGCATG_J10
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_I8

description:
TAGGCATG_I8
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 30


title: 46hpi_J1

description:
TAGGCATG_J1
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_J11

description:
TAGGCATG_J11
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 28


title: 46hpi_J2

description:
TAGGCATG_J2
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 32


title: 46hpi_I9

description:
TAGGCATG_I9
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 27


title: 46hpi_I7

description:
TAGGCATG_I7
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_I6

description:
TAGGCATG_I6
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 26


title: 46hpi_I5

description:
TAGGCATG_I5
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_J17

description:
TAGGCATG_J17
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 25


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 24


title: 46hpi_I4

description:
TAGGCATG_I4
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 21


title: 46hpi_I3

description:
TAGGCATG_I3
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_I24

description:
TAGGCATG_I24
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 23


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 22


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 20


title: 46hpi_I23

description:
TAGGCATG_I23
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 19


title: 46hpi_I21

description:
TAGGCATG_I21
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 18


title: 46hpi_I20

description:
TAGGCATG_I20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_I2

description:
TAGGCATG_I2
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 16


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 17


title: 46hpi_I19

description:
TAGGCATG_I19
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 15


title: 46hpi_I16

description:
TAGGCATG_I16
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_I18

description:
TAGGCATG_I18
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_I17

description:
TAGGCATG_I17
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 14


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 12


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 13


title: 46hpi_I14

description:
TAGGCATG_I14
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 10


title: 46hpi_I15

description:
TAGGCATG_I15
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 11


title: 46hpi_I12

description:
TAGGCATG_I12
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_I22

description:
TAGGCATG_I22
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 07


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 06


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 05


title: 46hpi_I1

description:
TAGGCATG_I1
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_I10

description:
TAGGCATG_I10
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H9

description:
TAGGCATG_H9
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 04


title: 46hpi_H8

description:
TAGGCATG_H8
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H7

description:
TAGGCATG_H7
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H6

description:
TAGGCATG_H6
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 02


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 03


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 01


title: 46hpi_H5

description:
TAGGCATG_H5
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 35


title: 46hpi_H3

description:
TAGGCATG_H3
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 34


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 33


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 36


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 09


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18219 cell 08


title: 46hpi_I11

description:
TAGGCATG_I11
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 32


title: 46hpi_I13

description:
TAGGCATG_I13
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 31


title: 46hpi_H23

description:
TAGGCATG_H23
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H22

description:
TAGGCATG_H22
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H21

description:
TAGGCATG_H21
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 29


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 30


title: 46hpi_H20

description:
TAGGCATG_H20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H2

description:
TAGGCATG_H2
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H19

description:
TAGGCATG_H19
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 28


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 27


title: 46hpi_H18

description:
TAGGCATG_H18
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H4

description:
TAGGCATG_H4
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H24

description:
TAGGCATG_H24
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 26


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 24


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 25


title: 46hpi_H13

description:
TAGGCATG_H13
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H14

description:
TAGGCATG_H14
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H15

description:
TAGGCATG_H15
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H12

description:
TAGGCATG_H12
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 22


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 21


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 19


title: 46hpi_H11

description:
TAGGCATG_H11
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 18


title: 46hpi_H10

description:
TAGGCATG_H10
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 20


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 17


title: 46hpi_H1

description:
TAGGCATG_H1
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G9

description:
TAGGCATG_G9
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G8

description:
TAGGCATG_G8
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 15


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 14


title: 46hpi_G7

description:
TAGGCATG_G7
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H17

description:
TAGGCATG_H17
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G6

description:
TAGGCATG_G6
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G5

description:
TAGGCATG_G5
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_H16

description:
TAGGCATG_H16
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 12


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 23


title: 46hpi_G4

description:
TAGGCATG_G4
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 10


title: 46hpi_G3

description:
TAGGCATG_G3
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 11


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 08


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 07


title: 46hpi_G23

description:
TAGGCATG_G23
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G21

description:
TAGGCATG_G21
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 09


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 06


title: 46hpi_G22

description:
TAGGCATG_G22
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 16


title: 46hpi_G2

description:
TAGGCATG_G2
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 05


title: 46hpi_G19

description:
TAGGCATG_G19
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 02


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 03


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 13


title: 46hpi_G20

description:
TAGGCATG_G20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G17

description:
TAGGCATG_G17
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G18

description:
TAGGCATG_G18
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G16

description:
TAGGCATG_G16
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 36


title: 46hpi_G15

description:
TAGGCATG_G15
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 35


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 34


title: 46hpi_G13

description:
TAGGCATG_G13
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G24

description:
TAGGCATG_G24
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G14

description:
TAGGCATG_G14
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G12

description:
TAGGCATG_G12
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 33


title: 46hpi_G11

description:
TAGGCATG_G11
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_G10

description:
TAGGCATG_G10
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 31


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 30


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 29


title: 46hpi_G1

description:
TAGGCATG_G1
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 04


title: 46hpi_F9

description:
TAGGCATG_F9
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 28


title: 46hpi_F8

description:
TAGGCATG_F8
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 27


title: 46hpi_F7

description:
TAGGCATG_F7
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3del/del mouse 18217 cell 01


title: 46hpi_F5

description:
TAGGCATG_F5
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 25


title: 46hpi_F6

description:
TAGGCATG_F6
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 26


title: 46hpi_F4

description:
TAGGCATG_F4
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F3

description:
TAGGCATG_F3
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 23


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 24


title: 46hpi_F24

description:
TAGGCATG_F24
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 22


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 21


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 32


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 20


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 19


title: 46hpi_F22

description:
TAGGCATG_F22
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F23

description:
TAGGCATG_F23
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 18


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 17


title: 46hpi_F19

description:
TAGGCATG_F19
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F2

description:
TAGGCATG_F2
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 16


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 15


title: 46hpi_F20

description:
TAGGCATG_F20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F18

description:
TAGGCATG_F18
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 14


title: 46hpi_F17

description:
TAGGCATG_F17
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F16

description:
TAGGCATG_F16
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 12


title: 46hpi_F15

description:
TAGGCATG_F15
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 10


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 11


title: 46hpi_F13

description:
TAGGCATG_F13
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 13


title: 46hpi_F14

description:
TAGGCATG_F14
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F11

description:
TAGGCATG_F11
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F21

description:
TAGGCATG_F21
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F12

description:
TAGGCATG_F12
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F10

description:
TAGGCATG_F10
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_F1

description:
TAGGCATG_F1
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_E8

description:
TAGGCATG_E8
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 07


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 04


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 05


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 06


title: 46hpi_E9

description:
TAGGCATG_E9
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 03


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 02


title: 46hpi_E7

description:
TAGGCATG_E7
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 01


title: 46hpi_E6

description:
TAGGCATG_E6
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_E5

description:
TAGGCATG_E5
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 35


title: 46hpi_E4

description:
TAGGCATG_E4
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 36


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 34


title: 46hpi_E3

description:
TAGGCATG_E3
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 08


title: 46hpi_E24

description:
TAGGCATG_E24
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18220 cell 09


title: 46hpi_E23

description:
TAGGCATG_E23
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_E22

description:
TAGGCATG_E22
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 33


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 31


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 32


title: 46hpi_E21

description:
TAGGCATG_E21
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 30


title: 46hpi_E20

description:
TAGGCATG_E20
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 29


title: 46hpi_E2

description:
TAGGCATG_E2
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 28


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 25


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 26


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 27


title: 46hpi_E17

description:
TAGGCATG_E17
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_E19

description:
TAGGCATG_E19
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 24


title: 46hpi_E16

description:
TAGGCATG_E16
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_E15

description:
TAGGCATG_E15
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 23


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 22


title: 46hpi_E14

description:
TAGGCATG_E14
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_E13

description:
TAGGCATG_E13
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 20


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 18


title: 46hpi_E11

description:
TAGGCATG_E11
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_E12

description:
TAGGCATG_E12
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 19


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 16


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 17


title: 46hpi_D9

description:
TAGGCATG_D9
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_E10

description:
TAGGCATG_E10
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 15


title: 46hpi_E1

description:
TAGGCATG_E1
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_E18

description:
TAGGCATG_E18
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D8

description:
TAGGCATG_D8
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D7

description:
TAGGCATG_D7
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 14


title: 46hpi_D6

description:
TAGGCATG_D6
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 11


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 13


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 12


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 21


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 10


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 09


title: 46hpi_D24

description:
TAGGCATG_D24
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D4

description:
TAGGCATG_D4
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 08


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 07


title: 46hpi_D22

description:
TAGGCATG_D22
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D21

description:
TAGGCATG_D21
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D23

description:
TAGGCATG_D23
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 06


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 05


title: 46hpi_D20

description:
TAGGCATG_D20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D5

description:
TAGGCATG_D5
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 02


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 03


title: 46hpi_D3

description:
TAGGCATG_D3
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 01


title: 46hpi_D16

description:
TAGGCATG_D16
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D17

description:
TAGGCATG_D17
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D18

description:
TAGGCATG_D18
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 84

value: All-lymphoid progenitor (ALP, Lin- Sca-1+ c-Kit+ Flt3hi IL-7Ra+ Ly6D- B220-)


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 82


title: 46hpi_D12

description:
TAGGCATG_D12
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D14

description:
TAGGCATG_D14
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 83


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 81


title: 46hpi_D13

description:
TAGGCATG_D13
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 80


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 78


title: 46hpi_D15

description:
TAGGCATG_D15
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 77


title: 46hpi_D10

description:
TAGGCATG_D10
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 79


title: 46hpi_C9

description:
TAGGCATG_C9
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D2

description:
TAGGCATG_D2
46hpi.raw.tsv
46hpi.normalized.tsv


title: B-biased lymphoid progenitor (BLP) Mbd3flox/flox mouse 18218 cell 04


title: 46hpi_C8

description:
TAGGCATG_C8
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 75


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 76


title: 46hpi_D19

description:
TAGGCATG_D19
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C7

description:
TAGGCATG_C7
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C6

description:
TAGGCATG_C6
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 74


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 73


title: 46hpi_C5

description:
TAGGCATG_C5
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 72


title: 46hpi_C4

description:
TAGGCATG_C4
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_D11

description:
TAGGCATG_D11
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 71


title: 46hpi_D1

description:
TAGGCATG_D1
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 67


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 68


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 69


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 66


title: 46hpi_C22

description:
TAGGCATG_C22
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 70


title: 46hpi_C21

description:
TAGGCATG_C21
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C23

description:
TAGGCATG_C23
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 63


title: 46hpi_C18

description:
TAGGCATG_C18
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 64


title: 46hpi_C2

description:
TAGGCATG_C2
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 62


title: 46hpi_C19

description:
TAGGCATG_C19
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C17

description:
TAGGCATG_C17
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 61


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 65


title: 46hpi_C16

description:
TAGGCATG_C16
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 60


title: 46hpi_C24

description:
TAGGCATG_C24
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 59


title: 46hpi_C15

description:
TAGGCATG_C15
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C3

description:
TAGGCATG_C3
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 58


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 57


title: 46hpi_C13

description:
TAGGCATG_C13
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C14

description:
TAGGCATG_C14
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C20

description:
TAGGCATG_C20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C12

description:
TAGGCATG_C12
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C11

description:
TAGGCATG_C11
46hpi.raw.tsv
46hpi.normalized.tsv


title: small RNAs produced by Dicer-2 [DHelicase] in vitro

city: BALTIMORE

first: Ryuya

last: Fukunaga

state: MD

address: 725 N. Wolfe St. 521A Physiology Bldg

department: Department of Biological Chemistry

institute: Johns Hopkins University School of Medicine

description:
small RNAs produced from 104 bp dsRNA in vitro
The sequences of strands 1 and 2 of the 104 bp dsRNAs are:  5'-GGGCCACAAGUUCAGCGUGUCCGGCGAGGGCGAGGGCGAUGCCACCUACGGCAAGCUGACCCUGAAGUUCAUCUGCACCACCGGCAAGCUGCCCGUGCCCUGGCCC-3'  and  5'-GCCAGGGCACGGGCAGCUUGCCGGUGGUGCAGAUGAACUUCAGGGUCAGCUUGCCGUAGGUGGCAUCGCCCUCGCCCUCGCCGGACACGCUGAACUUGUGGCCCAA-3'.  These two strands make 104 bp dsRNA with 3' 2-nt overhang at both ends.

data_processing:
Basecalls performed using bcl2fastq version 2.16
Sequenced reads were trimmed for adaptor sequence.
Genome_build: dm3
Supplementary_files_format_and_content: [.txt] Tab-delimited text file. Length of the read, Number of the read, Sequence of the read.

molecule: other

organism: synthetic construct

source_name: 104 bp dsRNA

extract_protocol:
Female fly heads were hand-dissected and RNAs were prepared using miRVana.
Libraries were prepared as previously described (Fukunaga et al, 2014 and Han et al, 2015).

tag: proteins

tag: sample type

value: in vitro


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 55


title: small RNAs produced by Dicer-2 [DCdsRBD] in vitro


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 56


title: 46hpi_C10

description:
TAGGCATG_C10
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_C1

description:
TAGGCATG_C1
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B9

description:
TAGGCATG_B9
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B8

description:
TAGGCATG_B8
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 53


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 54


title: 46hpi_B7

description:
TAGGCATG_B7
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B5

description:
TAGGCATG_B5
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B4

description:
TAGGCATG_B4
46hpi.raw.tsv
46hpi.normalized.tsv


title: IUGR 3

city: Tucson

first: Sean

middle: W

last: Limesand

state: AZ

address: 4101 N Campbell Ave

department: Animal & Comparative Biomedical Sciences

institute: University of Ariziona

data_processing:
TopHat 2.0.1 was used to align reads to the ovine genome
Cufflinks 2.1.1 cufflinks (-G annotation only) was used to determine transcriptome data using  Ovis_aries.Oar_v3.1.74.gtf, Ensembl release-74 annotation
Cufflinks 2.1.1 cuffmerge was used to create a unified non-redundant transcriptome
Cufflinks 2.1.1  cuffdiff was used to determine differential gene expression, alpha-0.05
Genome_build: Ovis_aries.Oar_v3.1.74.toplevel.fa, ISGC, Ensembl release 74 and bos taurus, UMD 3.1, Illumina iGenomes
Supplementary_files_format_and_content: gene_id.repFPKM has cufflinks tracking_ id, ensembl_id, gene names,  locus and FPKM data by sample; gene_exp.diff has cuffdiff statistical output.

organism: Ovis aries

source_name: Isolated fetal pancreatic islets

growth_protocol: Columbia-Rambouillet crossbred ewes carrying singleton pregnancies.

extract_protocol:
Islets were isolated and handpicked then frozen at -80C for RNA extraction with Qiagen Microprep RNAeasy
mRNA was selected and double-stranded cDNA libraries with ligated sequencing adapters was constructed with the Illumina TruSeq RNA Sample Prep Kit. Cluster generation was conducted with Illumina TruSeq 100bp PE (paired end) cluster kit

treatment_protocol: IUGR fetuses were generated by exposing pregnant ewes to elevated ambient temperatures (40°C for 12h; 35°C for 12h) from 37 ± 3 days gestation age (dGA) until 120 ± 3 dGA. Control fetuses were from ewes that were pair fed to the average intake of the heat stressed ewes.

tag: growth status

value: Intrauterine Growth Restricted (IUGR)

tag: tissue

value: pancreatic islets

tag: breed

value: Columbia-Rambouillet

tag: gestional age (day)

tag: Sex

value: Male

tag: fetal weight (kg)


title: 46hpi_B6

description:
TAGGCATG_B6
46hpi.raw.tsv
46hpi.normalized.tsv


title: IUGR 4

value: Female


title: IUGR 2


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 52


title: IUGR 1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 51


title: 46hpi_B24

description:
TAGGCATG_B24
46hpi.raw.tsv
46hpi.normalized.tsv


title: Control 4

value: control


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 50


title: 46hpi_B22

description:
TAGGCATG_B22
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B23

description:
TAGGCATG_B23
46hpi.raw.tsv
46hpi.normalized.tsv


title: Control 3


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 49


title: 46hpi_B21

description:
TAGGCATG_B21
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 48


title: Control 1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 47


title: 46hpi_B20

description:
TAGGCATG_B20
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B16

description:
TAGGCATG_B16
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B2

description:
TAGGCATG_B2
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B17

description:
TAGGCATG_B17
46hpi.raw.tsv
46hpi.normalized.tsv


title: CD8kMup, NC-ctrl-3

city: La Jolla

first: Max

last: Chang

state: CA

address: 9500 Gilman Drive

institute: University of California, San Diego

data_processing:
Short read sequences were mapped to a UCSC mm10 reference sequence using the RNA-Seq aligner STAR
Known splice junctions from mm10 were supplied to the aligner and de novo junction discovery was also permitted.
Transcript expression was calculated as gene-level abundance on Refseq transcripts using HOMER.  Raw read counts across all experiments were normalized using the variance-stabalizing rlog transform with DESeq2.
Genome_build: mm10
Supplementary_files_format_and_content: Tab-delimited normalized gene expression values for all samples (log2)

source_name: Liver

extract_protocol:
Total RNA was extracted using an AllPrep DNA/RNA mini Kit (Qiagen). Some of the livers were homogenized with Trizol reagent and extracted with chloroform/isopropanol, followed by the purification using RNeasy Mini Kit (Qiagen).
Sequencing libraries were prepared from 100 ng of total RNA using the TruSeq Stranded mRNA Library Prep Kit (Illumina) according to the manufacturer's protocol.

tag: disease stage

value: healthy Liver

tag: gender

value: male


title: 46hpi_B19

description:
TAGGCATG_B19
46hpi.raw.tsv
46hpi.normalized.tsv


title: CD8kMup, NC-ctrl-2


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 45


title: 46hpi_B18

description:
TAGGCATG_B18
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B12

description:
TAGGCATG_B12
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B3

description:
TAGGCATG_B3
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 46


title: 46hpi_B13

description:
TAGGCATG_B13
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B11

description:
TAGGCATG_B11
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 44


title: 46hpi_B10

description:
TAGGCATG_B10
46hpi.raw.tsv
46hpi.normalized.tsv


title: CD8kMup, NC-ctrl-1


title: Control 2


title: IgAkMup, NC-ctrl-3


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 43


title: IgAkMup, NC-ctrl-2


title: 46hpi_A9

description:
TAGGCATG_A9
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A8

description:
TAGGCATG_A8
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 42


title: 46hpi_A7

description:
TAGGCATG_A7
46hpi.raw.tsv
46hpi.normalized.tsv


title: IgAkMup, NC-ctrl-1


title: 46hpi_B15

description:
TAGGCATG_B15
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A6

description:
TAGGCATG_A6
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B14

description:
TAGGCATG_B14
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 41


title: MupHe, NC-ctrl-3


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 40


title: 46hpi_A5

description:
TAGGCATG_A5
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A3

description:
TAGGCATG_A3
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A4

description:
TAGGCATG_A4
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_B1

description:
TAGGCATG_B1
46hpi.raw.tsv
46hpi.normalized.tsv


title: MupHe, NC-ctrl-1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 38


title: B6, NC-ctrl-3


title: 46hpi_A23

description:
TAGGCATG_A23
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A22

description:
TAGGCATG_A22
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A20

description:
TAGGCATG_A20
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 37


title: 46hpi_A21

description:
TAGGCATG_A21
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A24

description:
TAGGCATG_A24
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A2

description:
TAGGCATG_A2
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A19

description:
TAGGCATG_A19
46hpi.raw.tsv
46hpi.normalized.tsv


title: B6, NC-ctrl-1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 36


title: 46hpi_A17

description:
TAGGCATG_A17
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 35


title: MupHe, NC-ctrl-2


title: 46hpi_A16

description:
TAGGCATG_A16
46hpi.raw.tsv
46hpi.normalized.tsv


title: eWAT_RNA_3

city: Houston

first: Quincy

last: Mo

address: One Baylor Plaza

institute: Baylor College of Medicine

data_processing:
Illumina bcl2fastq-1.8.3 software used for basecalling.
The 11 nucleotides from the 5' ends of the 101 nucleotide reads were trimmed.  The resulting 90-nucleotide pair-end reads were mapped to mm10 using STAR_2.4.2a.
Read duplicates were removed by picard-1.119 and read count for each gene was generated by HTSeq-0.6.1p1. EdgeR was used test the difference between groups of interest.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files include count values for each Sample.

source_name: eWAT

extract_protocol:
Total RNA was extracted using an Aurum Total RNA Fatty and Fibrous Tissue Kit following the manufacturer’s instructions (Bio-Rad).
Two hundred and fifty ng of total RNA was used to generate double-stranded DNA libraries using the Illumina TruSeq RNA library preparation protocol.

treatment_protocol: No treatment. C57BL/6 mice housed at ambient temperature.

value: 8-weeks old

value: White adipose tissue

tag: tissue type

value: Epididymal white adipose tissue


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 34

tag: cell type

value: 7 weeks


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 39

tag: strain


title: 46hpi_A14

description:
TAGGCATG_A14
46hpi.raw.tsv
46hpi.normalized.tsv


title: 46hpi_A15

description:
TAGGCATG_A15
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 33

tag: age


title: 46hpi_A13

description:
TAGGCATG_A13
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 32

tag: genotype


title: 46hpi_A12

description:
TAGGCATG_A12
46hpi.raw.tsv
46hpi.normalized.tsv

tag: time point


title: iWAT_RNA_3

source_name: iWAT

value: Inguinal white adipose tissue


title: iWAT_RNA_2


title: 46hpi_A1

description:
TAGGCATG_A1
46hpi.raw.tsv
46hpi.normalized.tsv

tag: induced

value: Induced


title: 46hpi_A11

description:
TAGGCATG_A11
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 30


title: 42hpi_unknown

description:
GGACTCCT_unknown
42hpi.raw.tsv
42hpi.normalized.tsv


title: B6, NC-ctrl-2


title: iWAT_RNA_1


title: 42hpi_P9

description:
GGACTCCT_P9
42hpi.raw.tsv
42hpi.normalized.tsv

value: Uninduced


title: 42hpi_P8

description:
GGACTCCT_P8
42hpi.raw.tsv
42hpi.normalized.tsv


title: 46hpi_A18

description:
TAGGCATG_A18
46hpi.raw.tsv
46hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 29

value: All-lymphoid progenitor (ALP, Lin- Sca-1+ c-Kit+ Flt3hi IL-7Ra+ Ly6D- B220-)


title: 46hpi_A10

description:
TAGGCATG_A10
46hpi.raw.tsv
46hpi.normalized.tsv


title: scBAT_RNA_3

source_name: scBAT

value: Brown adipose tissue

value: Supraclavicular brown adipose tissue


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 28


title: eWAT_RNA_2


title: 42hpi_P5

description:
GGACTCCT_P5
42hpi.raw.tsv
42hpi.normalized.tsv


title: scBAT_RNA_2


title: 42hpi_P4

description:
GGACTCCT_P4
42hpi.raw.tsv
42hpi.normalized.tsv


title: scBAT_RNA_1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 27


title: eWAT_RNA_1


title: 42hpi_P3

description:
GGACTCCT_P3
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 31


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 26


title: 42hpi_P24

description:
GGACTCCT_P24
42hpi.raw.tsv
42hpi.normalized.tsv


title: iBAT_RNA_3

source_name: iBAT

value: Interscapular brown adipose tissue


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 25


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 24


title: 42hpi_P22

description:
GGACTCCT_P22
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P7

description:
GGACTCCT_P7
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P21

description:
GGACTCCT_P21
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P2

description:
GGACTCCT_P2
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P20

description:
GGACTCCT_P20
42hpi.raw.tsv
42hpi.normalized.tsv


title: iBAT_RNA_1


title: 42hpi_P19

description:
GGACTCCT_P19
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P17

description:
GGACTCCT_P17
42hpi.raw.tsv
42hpi.normalized.tsv


title: 6_month_Double_4

city: Philadelphia

first: Michael

middle: Patrick

last: Morley

state: PA

address: 3400 Civic Center Blvd, Bldg 421

department: Penn Cardiovascular Institute

institute: Perelman School of Medicine at the University of Pennsylvania

data_processing:
Fastq files were align to the mm9 reference genome using STAR and default parameters
Ensmebl v67 gene annotations were used for gene counts, gene counts were obtain using STAR
Raw gene counts were transformed using 'LIMMA-Voom' method
Genome_build: mm9
Supplementary_files_format_and_content: Voom transformed abundance measurements

source_name: Lung epithelium

extract_protocol:
RNA was extracted and purified using Trizol. E18.5 epithelial cells were enriched using magnetic pulldown of EpCAM+ cells. 6 month epithelial cells were enriched using FACS to collect EpCAM+,CD45-,CD31- cells
library construction protocol not provided.

value: 6 month

value: lung


title: 42hpi_P23

description:
GGACTCCT_P23
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P16

description:
GGACTCCT_P16
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P18

description:
GGACTCCT_P18
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P15

description:
GGACTCCT_P15
42hpi.raw.tsv
42hpi.normalized.tsv


title: 6_month_Double_3


title: 42hpi_P14

description:
GGACTCCT_P14
42hpi.raw.tsv
42hpi.normalized.tsv


title: 6_month_Double_2


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 20


title: 42hpi_P13

description:
GGACTCCT_P13
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 21


title: 42hpi_P12

description:
GGACTCCT_P12
42hpi.raw.tsv
42hpi.normalized.tsv


title: iBAT_RNA_2


title: 42hpi_P11

description:
GGACTCCT_P11
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P6

description:
GGACTCCT_P6
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_P10

description:
GGACTCCT_P10
42hpi.raw.tsv
42hpi.normalized.tsv


title: 6_month_Double_1


title: 42hpi_P1

description:
GGACTCCT_P1
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 18


title: 6_month_Nkx_3


title: 42hpi_O8

description:
GGACTCCT_O8
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O9

description:
GGACTCCT_O9
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O7

description:
GGACTCCT_O7
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 23


title: 42hpi_O6

description:
GGACTCCT_O6
42hpi.raw.tsv
42hpi.normalized.tsv


title: 6_month_Nkx_2


title: 6_month_Nkx_1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 17


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 22


title: 42hpi_O5

description:
GGACTCCT_O5
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 16


title: 42hpi_O4

description:
GGACTCCT_O4
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 15


title: 42hpi_O24

description:
GGACTCCT_O24
42hpi.raw.tsv
42hpi.normalized.tsv


title: 6_month_WT_3

value: NANCI-+/+


title: 42hpi_O3

description:
GGACTCCT_O3
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O23

description:
GGACTCCT_O23
42hpi.raw.tsv
42hpi.normalized.tsv


title: 6_month_WT_2


title: 6_month_WT_1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 14


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 13


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 19


title: 42hpi_O21

description:
GGACTCCT_O21
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O22

description:
GGACTCCT_O22
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O20

description:
GGACTCCT_O20
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 12


title: 42hpi_O18

description:
GGACTCCT_O18
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O19

description:
GGACTCCT_O19
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 11


title: E18.5_Double_2


title: 42hpi_O2

description:
GGACTCCT_O2
42hpi.raw.tsv
42hpi.normalized.tsv


title: E18.5_Double_3


title: E18.5_Double_1


title: 42hpi_O15

description:
GGACTCCT_O15
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 10


title: 42hpi_O16

description:
GGACTCCT_O16
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O17

description:
GGACTCCT_O17
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O14

description:
GGACTCCT_O14
42hpi.raw.tsv
42hpi.normalized.tsv


title: E18.5_Nkx_3


title: E18.5_Nkx_2


title: 42hpi_O13

description:
GGACTCCT_O13
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O12

description:
GGACTCCT_O12
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 08


title: 42hpi_O11

description:
GGACTCCT_O11
42hpi.raw.tsv
42hpi.normalized.tsv


title: E18.5_Nkx_1


title: 42hpi_O10

description:
GGACTCCT_O10
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_O1

description:
GGACTCCT_O1
42hpi.raw.tsv
42hpi.normalized.tsv


title: E18.5_NANCI_3


title: 42hpi_N8

description:
GGACTCCT_N8
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 06


title: 42hpi_N9

description:
GGACTCCT_N9
42hpi.raw.tsv
42hpi.normalized.tsv


title: E18.5_NANCI_2


title: 42hpi_N7

description:
GGACTCCT_N7
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_N6

description:
GGACTCCT_N6
42hpi.raw.tsv
42hpi.normalized.tsv


title: E18.5_NANCI_1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 04


title: 42hpi_N4

description:
GGACTCCT_N4
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 05


title: 42hpi_N5

description:
GGACTCCT_N5
42hpi.raw.tsv
42hpi.normalized.tsv


title: E18.5_WT_3


title: 42hpi_N3

description:
GGACTCCT_N3
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 09


title: 42hpi_N24

description:
GGACTCCT_N24
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 03


title: 42hpi_N23

description:
GGACTCCT_N23
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 02


title: E18.5_WT_2


title: 42hpi_N22

description:
GGACTCCT_N22
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 07


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18219 cell 01


title: 42hpi_N21

description:
GGACTCCT_N21
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_N20

description:
GGACTCCT_N20
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_N2

description:
GGACTCCT_N2
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 84


title: MupHe, HFD-HCC-4

data_processing:
Short read sequences were mapped to a UCSC mm10 reference sequence using the RNA-Seq aligner STAR
Known splice junctions from mm10 were supplied to the aligner and de novo junction discovery was also permitted. Differential gene expression analysis, statistical testing and annotation were performed using Cuffdiff 2
Transcript expression was calculated as gene-level relative abundance in fragments per kilobase of exon model per million mapped fragments and employed correction for transcript abundance bias
Genome_build: mm10
Supplementary_files_format_and_content: comma-separated values containing FPKM quantification for all samples

source_name: Liver-HCC

value: HCC liver


title: 42hpi_N19

description:
GGACTCCT_N19
42hpi.raw.tsv
42hpi.normalized.tsv


title: MupHe, HFD-HCC-3


title: 42hpi_N18

description:
GGACTCCT_N18
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 83


title: MupHe, HFD-HCC-2


title: 42hpi_N16

description:
GGACTCCT_N16
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_N15

description:
GGACTCCT_N15
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_N17

description:
GGACTCCT_N17
42hpi.raw.tsv
42hpi.normalized.tsv


title: MupHe, HFD-HCC-1


title: 42hpi_N14

description:
GGACTCCT_N14
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 81


title: IgAkMup, HFD-HCC-4


title: 42hpi_N12

description:
GGACTCCT_N12
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 80


title: IgAkMup, HFD-HCC-3


title: E18.5_WT_1


title: 42hpi_N13

description:
GGACTCCT_N13
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 79


title: 42hpi_N1

description:
GGACTCCT_N1
42hpi.raw.tsv
42hpi.normalized.tsv


title: IgAkMup, HFD-HCC-2


title: 42hpi_N10

description:
GGACTCCT_N10
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M8

description:
GGACTCCT_M8
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 78


title: IgAkMup, HFD-HCC-1


title: 42hpi_M9

description:
GGACTCCT_M9
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M6

description:
GGACTCCT_M6
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 77


title: CD8kMup,HFD-HCC-3


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 76


title: 42hpi_M4

description:
GGACTCCT_M4
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M7

description:
GGACTCCT_M7
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M24

description:
GGACTCCT_M24
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 75


title: CD8kMup,HFD-HCC-1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 82


title: CD8kMup,HFD-HCC-2


title: 42hpi_N11

description:
GGACTCCT_N11
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M23

description:
GGACTCCT_M23
42hpi.raw.tsv
42hpi.normalized.tsv


title: MupHe, HFD-NASH-3

value: NASH liver


title: 42hpi_M21

description:
GGACTCCT_M21
42hpi.raw.tsv
42hpi.normalized.tsv


title: MupHe, HFD-NASH-2

value: male


title: 42hpi_M20

description:
GGACTCCT_M20
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 73


title: MupHe, HFD-NASH-1


title: 42hpi_M19

description:
GGACTCCT_M19
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 71


title: 42hpi_M18

description:
GGACTCCT_M18
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M17

description:
GGACTCCT_M17
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M2

description:
GGACTCCT_M2
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M5

description:
GGACTCCT_M5
42hpi.raw.tsv
42hpi.normalized.tsv


title: IgAkMup, HFD-NASH-3


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 70


title: 42hpi_M15

description:
GGACTCCT_M15
42hpi.raw.tsv
42hpi.normalized.tsv


title: IgAkMup, HFD-NASH-2


title: 42hpi_M3

description:
GGACTCCT_M3
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M14

description:
GGACTCCT_M14
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M16

description:
GGACTCCT_M16
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 69


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 74


title: 42hpi_M13

description:
GGACTCCT_M13
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M22

description:
GGACTCCT_M22
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M12

description:
GGACTCCT_M12
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_M11

description:
GGACTCCT_M11
42hpi.raw.tsv
42hpi.normalized.tsv


title: IgAkMup, HFD-NASH-1


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 68


title: CD8kMup,HFD-NASH-3


title: 42hpi_M10

description:
GGACTCCT_M10
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 67


title: 42hpi_L8

description:
GGACTCCT_L8
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 65


title: 42hpi_M1

description:
GGACTCCT_M1
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_L4

description:
GGACTCCT_L4
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_L6

description:
GGACTCCT_L6
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 72


title: 42hpi_L9

description:
GGACTCCT_L9
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 63


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 64


title: IgAkCLM, HFD-ctrl-1

value: healthy fatty Liver


title: 42hpi_L7

description:
GGACTCCT_L7
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_L22

description:
GGACTCCT_L22
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_L24

description:
GGACTCCT_L24
42hpi.raw.tsv
42hpi.normalized.tsv


title: IgAkCLM, HFD-ctrl-3


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 61


title: 42hpi_L2

description:
GGACTCCT_L2
42hpi.raw.tsv
42hpi.normalized.tsv


title: IgAkCLM, HFD-ctrl-2


title: 42hpi_L20

description:
GGACTCCT_L20
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 60


title: CD8kCLM,HFD-ctrl-2


title: 42hpi_L5

description:
GGACTCCT_L5
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_L23

description:
GGACTCCT_L23
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 62


title: 42hpi_L3

description:
GGACTCCT_L3
42hpi.raw.tsv
42hpi.normalized.tsv


title: CD8kCLM,HFD-ctrl-1


title: 42hpi_L19

description:
GGACTCCT_L19
42hpi.raw.tsv
42hpi.normalized.tsv


title: CD8kMup,HFD-NASH-2


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 66


title: CD8kCLM,HFD-ctrl-3


title: CD8kMup,HFD-NASH-1


title: 42hpi_L21

description:
GGACTCCT_L21
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_L18

description:
GGACTCCT_L18
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 59


title: B6, HFD-ctrl-3


title: 42hpi_L17

description:
GGACTCCT_L17
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 58


title: 42hpi_L16

description:
GGACTCCT_L16
42hpi.raw.tsv
42hpi.normalized.tsv


title: B6, HFD-ctrl-2


title: 42hpi_L15

description:
GGACTCCT_L15
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_L14

description:
GGACTCCT_L14
42hpi.raw.tsv
42hpi.normalized.tsv


title: B6, HFD-ctrl-1


title: 42hpi_L12

description:
GGACTCCT_L12
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_L13

description:
GGACTCCT_L13
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 57


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 56


title: 42hpi_L11

description:
GGACTCCT_L11
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K9

description:
GGACTCCT_K9
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 54


title: 42hpi_L1

description:
GGACTCCT_L1
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_L10

description:
GGACTCCT_L10
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K8

description:
GGACTCCT_K8
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K7

description:
GGACTCCT_K7
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 53


title: E4.0_90

city: Paris Cedex 05

first: Nicolas

last: Servant

address: 26 rue d'ulm

country: France

institute: Institut Curie

data_processing:
Quality control: Reads characterized by at least one of the following criteria were discarded from the analysis i) >50% of low quality bases (Phred score <5) ii) >5% of N bases iii) >80% of AT rate iv) ≥30% of continuous A and/or T
Genome reconstruction: The VCF file (mgp.v5.merged.snps_all.dbSNP142.vcf) reporting all SNP sites from 36 mouse strains based on mm10 was downloaded from the Sanger database. Using SNPsplit tool (v0.3.0), these SNPs were filtered based on their quality values (FI value) and used to reconstruct the Cast genome from mm10 genome assembly.
Mapping: Single-end reads were then aligned to the mouse mm10 and Cast/EiJ genomes using the TopHat2 software (v2.1.0). Only random best alignments with less than 2 mismatches were reported for downstream analyses. The resulting mapping files for both parental genomes were then merged for each sample.
Allelic Ratio: The SAMtools mpileup utility (v1.1) was then used to extract base-pair information at each genomic position from the merged alignment file. At each SNP position, the number of paternal and maternal allele was counted. The allele-specific origin of the transcripts (or allelic ratio) has been measured by the total number of reads mapped on the paternal genome divided by the total number of reads for each gene: allelic ratio = paternal reads / (paternal+maternal) reads.
Estimation of gene expression levels: To estimate the transcript abundance, count tables of gene expression were generated using HTSeq v0.6.1 software. Read counts are then normalized based on the amplification size of each transcript (RPRT for Reads Per Retro-Transcribed length per million mapped reads)
Genome_build: mm10

source_name: single cell from E4.0 stage embryo

growth_protocol: natural matings, no embryo culture

extract_protocol:
PolyA+ mRNA extracted from each single cell was reverse transcribed from the 3’UTR and amplified following the Tang et al protocol. Care was taken to process only embryos and single blastomeres of the highest quality based on morphology, number of cells and on amplification yield. A total of 40 BC single blastomeres have been processed and passed quality controls.
Illumina manufacturer protocol

treatment_protocol: single cell cDNA amplification (Tang et al, 2010)

tag: developmental stage

value: Female

value: pre-implantation embryo


title: 42hpi_K5

description:
GGACTCCT_K5
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K6

description:
GGACTCCT_K6
42hpi.raw.tsv
42hpi.normalized.tsv


title: E4.0_86


title: E4.0_85


title: E4.0_87


title: 42hpi_K4

description:
GGACTCCT_K4
42hpi.raw.tsv
42hpi.normalized.tsv


title: E4.0_63


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 52

value: 7 weeks


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 51


title: 42hpi_K24

description:
GGACTCCT_K24
42hpi.raw.tsv
42hpi.normalized.tsv


title: E4.0_59


title: 42hpi_K23

description:
GGACTCCT_K23
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 50


title: E4.0_57


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 49


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 55


title: 42hpi_K20

description:
GGACTCCT_K20
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K21

description:
GGACTCCT_K21
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K2

description:
GGACTCCT_K2
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 48


title: E4.0_15


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 47


title: E4.0_16


title: 42hpi_K17

description:
GGACTCCT_K17
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 46


title: 42hpi_K19

description:
GGACTCCT_K19
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 45


title: 42hpi_K3

description:
GGACTCCT_K3
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K15

description:
GGACTCCT_K15
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K13

description:
GGACTCCT_K13
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K22

description:
GGACTCCT_K22
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K16

description:
GGACTCCT_K16
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K18

description:
GGACTCCT_K18
42hpi.raw.tsv
42hpi.normalized.tsv


title: E4.0_13


title: 42hpi_K11

description:
GGACTCCT_K11
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K12

description:
GGACTCCT_K12
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K14

description:
GGACTCCT_K14
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K10

description:
GGACTCCT_K10
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 43


title: E4.0_12


title: E4.0_17


title: 42hpi_J8

description:
GGACTCCT_J8
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_K1

description:
GGACTCCT_K1
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J9

description:
GGACTCCT_J9
42hpi.raw.tsv
42hpi.normalized.tsv


title: E4.0_10


title: E4.0_11


title: E4.0_14


title: 42hpi_J7

description:
GGACTCCT_J7
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J6

description:
GGACTCCT_J6
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 40


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 41


title: 42hpi_J4

description:
GGACTCCT_J4
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 44


title: E4.0_9


title: E4.0_8


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 39


title: 42hpi_J24

description:
GGACTCCT_J24
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J5

description:
GGACTCCT_J5
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J23

description:
GGACTCCT_J23
42hpi.raw.tsv
42hpi.normalized.tsv


title: E4.0_7


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 38


title: 42hpi_J3

description:
GGACTCCT_J3
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J20

description:
GGACTCCT_J20
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J2

description:
GGACTCCT_J2
42hpi.raw.tsv
42hpi.normalized.tsv


title: E4.0_6


title: 42hpi_J22

description:
GGACTCCT_J22
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 42


title: E4.0_5


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 36


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 37


title: 42hpi_J18

description:
GGACTCCT_J18
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 35


title: 42hpi_J19

description:
GGACTCCT_J19
42hpi.raw.tsv
42hpi.normalized.tsv


title: E4.0_3


title: E4.0_2


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 34


title: E4.0_1


title: 42hpi_J14

description:
GGACTCCT_J14
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J15

description:
GGACTCCT_J15
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 33


title: 42hpi_J13

description:
GGACTCCT_J13
42hpi.raw.tsv
42hpi.normalized.tsv


title: E3.5_77

source_name: single cell from E3.5 stage embryo


title: 42hpi_J12

description:
GGACTCCT_J12
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J21

description:
GGACTCCT_J21
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J11

description:
GGACTCCT_J11
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J10

description:
GGACTCCT_J10
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_J1

description:
GGACTCCT_J1
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 30


title: 42hpi_I8

description:
GGACTCCT_I8
42hpi.raw.tsv
42hpi.normalized.tsv


title: E3.5_74


title: 42hpi_I9

description:
GGACTCCT_I9
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I7

description:
GGACTCCT_I7
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I6

description:
GGACTCCT_I6
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 29


title: E3.5_75

description: accessioned in GEO previously as GSM2371571


title: 42hpi_J17

description:
GGACTCCT_J17
42hpi.raw.tsv
42hpi.normalized.tsv


title: E3.5_73


title: 42hpi_J16

description:
GGACTCCT_J16
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 28


title: 42hpi_I4

description:
GGACTCCT_I4
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I5

description:
GGACTCCT_I5
42hpi.raw.tsv
42hpi.normalized.tsv


title: E3.5_69


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 32


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 31


title: E3.5_76


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 27


title: E3.5_68


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 26


title: E3.5_67


title: E3.5_66


title: 42hpi_I23

description:
GGACTCCT_I23
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I24

description:
GGACTCCT_I24
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I21

description:
GGACTCCT_I21
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I22

description:
GGACTCCT_I22
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I20

description:
GGACTCCT_I20
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I2

description:
GGACTCCT_I2
42hpi.raw.tsv
42hpi.normalized.tsv


title: E3.5_65


title: 42hpi_I18

description:
GGACTCCT_I18
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I19

description:
GGACTCCT_I19
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 24


title: E3.5_64

description: accessioned in GEO previously as GSM2371570


title: 42hpi_I16

description:
GGACTCCT_I16
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I17

description:
GGACTCCT_I17
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 22


title: 42hpi_I15

description:
GGACTCCT_I15
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I3

description:
GGACTCCT_I3
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 21


title: 42hpi_I13

description:
GGACTCCT_I13
42hpi.raw.tsv
42hpi.normalized.tsv


title: E3.5_62


title: 42hpi_I12

description:
GGACTCCT_I12
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 25


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 20


title: 42hpi_I11

description:
GGACTCCT_I11
42hpi.raw.tsv
42hpi.normalized.tsv


title: E3.5_40

description: accessioned in GEO previously as GSM2371569


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 19


title: 42hpi_I10

description:
GGACTCCT_I10
42hpi.raw.tsv
42hpi.normalized.tsv


title: 42hpi_I1

description:
GGACTCCT_I1
42hpi.raw.tsv
42hpi.normalized.tsv


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 18


title: 42hpi_H7

description:
GGACTCCT_H7
42hpi.raw.tsv
42hpi.normalized.tsv


title: E3.5_36

description: accessioned in GEO previously as GSM2371568


title: All-lymphoid progenitor (ALP) Mbd3del/del mouse 18217 cell 17


title: E3.5_35

description: accessioned in GEO previously as GSM2371567


title: 42hpi_H8

description:
GGACTCCT_H8
42hpi.raw.tsv
42hpi.normalized.tsv