title: ChIP-seq from hindbrain (ENCLB168YBS)

description:
https://www.encodeproject.org/experiments/ENCSR545RUT/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR545RUT
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB168YBS
size range: 300-500

value: Control

value: hindbrain

value: Hindbrain from embryonic 13.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS296PIR at ENCODE; https://www.encodeproject.org/ENCBS296PIR/


title: ChIP-seq from hindbrain (ENCLB376XEM)

status: Public on Jun 22 2016

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR537AKT/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR537AKT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB376XEM
size range: 300-500

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Mus musculus

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days)

tag: antibody

value: tissue

tag: description

value: Hindbrain from 88 embryonic 12.5 day mice

tag: biosample encode accession

tag: age

tag: dev stage

value: embryonic

tag: Sex

value: pooled male and female

tag: health state

value: healthy

tag: lab

tag: link

value: ENCBS022IBY at ENCODE; https://www.encodeproject.org/ENCBS022IBY/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from limb (ENCLB611TFV)

description:
https://www.encodeproject.org/experiments/ENCSR254OTS/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR254OTS
assay title: WGBS
assembly: mm10
encode release date: 2016-03-14
lab: Joe Ecker, Salk
library encode accession: ENCLB611TFV
size range: 180-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (12.5 days)

value: limb

value: Limb from 88 embryonic 12.5 day mice

value: ENCBS731DGJ at ENCODE; https://www.encodeproject.org/ENCBS731DGJ/


title: ChIP-seq from forebrain (ENCLB291MOB)

description:
https://www.encodeproject.org/experiments/ENCSR523QKO/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR523QKO
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB291MOB
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days)

value: forebrain

value: Forebrain from 68 embryonic 12.5 day mice

value: ENCBS617DPG at ENCODE; https://www.encodeproject.org/ENCBS617DPG/


title: ChIP-seq from forebrain (ENCLB357VDK)

description:
https://www.encodeproject.org/experiments/ENCSR527EUE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR527EUE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB357VDK
size range: 300-500


title: WGBS from limb (ENCLB627YZQ)

description:
https://www.encodeproject.org/experiments/ENCSR254OTS/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR254OTS
assay title: WGBS
assembly: mm10
encode release date: 2016-03-14
lab: Joe Ecker, Salk
library encode accession: ENCLB627YZQ
size range: 180-500


title: WGBS from limb (ENCLB025QSH)

description:
https://www.encodeproject.org/experiments/ENCSR254OTS/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR254OTS
assay title: WGBS
assembly: mm10
encode release date: 2016-03-14
lab: Joe Ecker, Salk
library encode accession: ENCLB025QSH
size range: 180-500

value: Limb from 68 embryonic 12.5 day mice

value: ENCBS313XRY at ENCODE; https://www.encodeproject.org/ENCBS313XRY/


title: ChIP-seq from liver (ENCLB240RJE)

description:
https://www.encodeproject.org/experiments/ENCSR607HIQ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR607HIQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB240RJE
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (12.5 days)

value: liver

value: Liver from 88 embryonic 12.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS479VPX at ENCODE; https://www.encodeproject.org/ENCBS479VPX/


title: ChIP-seq from hindbrain (ENCLB603EDG)

description:
https://www.encodeproject.org/experiments/ENCSR537AKT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR537AKT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB603EDG
size range: 300-500

value: hindbrain

value: tissue

value: Hindbrain from 120 embryonic 12.5 day mice

value: embryonic

value: ENCBS406RIE at ENCODE; https://www.encodeproject.org/ENCBS406RIE/


title: ChIP-seq from hindbrain (ENCLB673FKY)

description:
https://www.encodeproject.org/experiments/ENCSR508HYL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR508HYL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB673FKY
size range: 300-500

value: pooled male and female

value: healthy

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from kidney (ENCLB806NIO)

description:
https://www.encodeproject.org/experiments/ENCSR178MLS/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on postnatal 0 day mouse kidney
experiment encode accession: ENCSR178MLS
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB806NIO
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex postnatal (0 days)

value: Control

value: kidney

value: Kidney from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS046AAA at ENCODE; https://www.encodeproject.org/ENCBS046AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from kidney (ENCLB398TOH)

description:
https://www.encodeproject.org/experiments/ENCSR178MLS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on postnatal 0 day mouse kidney
experiment encode accession: ENCSR178MLS
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB398TOH
size range: 300-500

value: Kidney from pooled postnatal 0 day mice

value: Len Pennacchio, LBNL

value: ENCBS562AAA at ENCODE; https://www.encodeproject.org/ENCBS562AAA/


title: ChIP-seq from liver (ENCLB243RKW)

description:
https://www.encodeproject.org/experiments/ENCSR244KCW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR244KCW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB243RKW
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (11.5 days)

value: liver

value: tissue

value: Liver from 109 embyronic 11.5 day mice

value: ENCBS746POP at ENCODE; https://www.encodeproject.org/ENCBS746POP/


title: ChIP-seq from hindbrain (ENCLB189CZM)

description:
https://www.encodeproject.org/experiments/ENCSR185JBL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR185JBL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR896PWV
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB189CZM
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex embryo (14.5 days)

value: hindbrain

value: Hindbrain from 24 embryonic 14.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS004AAA at ENCODE; https://www.encodeproject.org/ENCBS004AAA/


title: microRNA-seq from lung (ENCLB775WAC)

description:
https://www.encodeproject.org/experiments/ENCSR185XJA/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq  on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR185XJA
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-01-06
lab: Ali Mortazavi, UCI
library encode accession: ENCLB775WAC
size range: <30

library_source: transcriptomic

molecule: total RNA

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (14.5 days)

value: lung

value: single lung from pup 1 pregnant 2 collected 7/17/2014

value: Barbara Wold, Caltech

value: ENCBS133FDE at ENCODE; https://www.encodeproject.org/ENCBS133FDE/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from hindbrain (ENCLB207FYZ)

description:
https://www.encodeproject.org/experiments/ENCSR185JBL/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR185JBL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR896PWV
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB207FYZ
size range: 300-500

value: Hindbrain from 34 embryonic 14.5 day mice

value: healthy

value: ENCBS016AAA at ENCODE; https://www.encodeproject.org/ENCBS016AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: microRNA-seq from lung (ENCLB257VDK)

description:
https://www.encodeproject.org/experiments/ENCSR185XJA/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq  on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR185XJA
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-01-06
lab: Ali Mortazavi, UCI
library encode accession: ENCLB257VDK
size range: <30

value: tissue

value: single lung from pup 1 pregnant 2 collected 7/15/2014

value: ENCBS581DHV at ENCODE; https://www.encodeproject.org/ENCBS581DHV/


title: microRNA-seq from hindbrain (ENCLB599FVX)

description:
https://www.encodeproject.org/experiments/ENCSR179ITA/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR179ITA
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-02-18
lab: Ali Mortazavi, UCI
library encode accession: ENCLB599FVX
size range: <30

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (13.5 days)

value: hindbrain

value: Hindbrain from embryonic 13.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS052EWC at ENCODE; https://www.encodeproject.org/ENCBS052EWC/


title: ChIP-seq from hindbrain (ENCLB409UPC)

description:
https://www.encodeproject.org/experiments/ENCSR508HYL/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR508HYL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB409UPC
size range: 300-500

value: Hindbrain from 88 embryonic 12.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS022IBY at ENCODE; https://www.encodeproject.org/ENCBS022IBY/


title: ChIP-seq from lung (ENCLB871HLU)

description:
https://www.encodeproject.org/experiments/ENCSR241RIG/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR241RIG
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB871HLU
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex postnatal (0 days)

value: Control

value: lung

value: Lung from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS042AAA at ENCODE; https://www.encodeproject.org/ENCBS042AAA/


title: ChIP-seq from kidney (ENCLB875OXZ)

description:
https://www.encodeproject.org/experiments/ENCSR498EVD/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on postnatal 0 day mouse kidney
experiment encode accession: ENCSR498EVD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR178MLS
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB875OXZ
size range: 300-500

value: kidney

value: tissue

value: Kidney from 15 postnatal 0 day mice

value: healthy

value: ENCBS046AAA at ENCODE; https://www.encodeproject.org/ENCBS046AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: microRNA-seq from hindbrain (ENCLB863HLA)

description:
https://www.encodeproject.org/experiments/ENCSR179ITA/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR179ITA
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-02-18
lab: Ali Mortazavi, UCI
library encode accession: ENCLB863HLA
size range: <30

value: hindbrain

value: Hindbrain from embryonic 13.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS296PIR at ENCODE; https://www.encodeproject.org/ENCBS296PIR/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from kidney (ENCLB665XDH)

description:
https://www.encodeproject.org/experiments/ENCSR498EVD/
***************
biological replicate number: 2
technical replicate number: 1,2,3
description: H3K9me3 ChIP-seq on postnatal 0 day mouse kidney
experiment encode accession: ENCSR498EVD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR178MLS
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB665XDH
size range: 300-500

value: Kidney from pooled postnatal 0 day mice

value: pooled male and female

value: ENCBS562AAA at ENCODE; https://www.encodeproject.org/ENCBS562AAA/


title: ChIP-seq from liver (ENCLB034UAE)

description:
https://www.encodeproject.org/experiments/ENCSR244KCW/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR244KCW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB034UAE
size range: 300-500

value: liver

value: Liver from pooled embryonic 11.5 day mice

value: embryonic

value: ENCBS522YOW at ENCODE; https://www.encodeproject.org/ENCBS522YOW/


title: ChIP-seq from limb (ENCLB159IPK)

description:
https://www.encodeproject.org/experiments/ENCSR176BXC/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse limb
experiment encode accession: ENCSR176BXC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR232EOO
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB159IPK
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap limb tissue mixed sex embryo (14.5 days)

value: limb

value: tissue

value: Limb from 34 embryonic 14.5 day mice

value: ENCBS023AAA at ENCODE; https://www.encodeproject.org/ENCBS023AAA/


title: ChIP-seq from neural tube (ENCLB086DCQ)

description:
https://www.encodeproject.org/experiments/ENCSR240OUM/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR240OUM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB086DCQ
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (11.5 days)

value: neural tube

value: Neural tube from 88 embyronic 11.5 day mice

value: healthy

value: ENCBS183YVD at ENCODE; https://www.encodeproject.org/ENCBS183YVD/


title: ChIP-seq from forebrain (ENCLB797JYD)

description:
https://www.encodeproject.org/experiments/ENCSR523QKO/
***************
biological replicate number: 1
technical replicate number: 2,1
description: Control ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR523QKO
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB797JYD
size range: 300-500

value: Control

value: forebrain

value: Forebrain from 120 embryonic 12.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS974GPH at ENCODE; https://www.encodeproject.org/ENCBS974GPH/


title: ChIP-seq from limb (ENCLB442MPP)

description:
https://www.encodeproject.org/experiments/ENCSR488KVB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR488KVB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB442MPP
size range: 300-500

value: Limb from 88 embryonic 12.5 day mice

value: pooled male and female

value: ENCBS731DGJ at ENCODE; https://www.encodeproject.org/ENCBS731DGJ/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from limb (ENCLB681PRN)

description:
https://www.encodeproject.org/experiments/ENCSR488KVB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR488KVB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB681PRN
size range: 300-500

value: limb

value: Limb from 68 embryonic 12.5 day mice

value: embryonic

value: ENCBS313XRY at ENCODE; https://www.encodeproject.org/ENCBS313XRY/


title: ChIP-seq from neural tube (ENCLB386VZY)

description:
https://www.encodeproject.org/experiments/ENCSR240OUM/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR240OUM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB386VZY
size range: 300-500

value: neural tube

value: tissue

value: Neural tube from 109 embyronic 11.5 day mice

value: ENCBS402TUS at ENCODE; https://www.encodeproject.org/ENCBS402TUS/


title: ChIP-seq from lung (ENCLB675ANZ)

description:
https://www.encodeproject.org/experiments/ENCSR250LXH/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR250LXH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR241RIG
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB675ANZ
size range: 300-500

value: lung

value: Lung from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: healthy

value: ENCBS558AAA at ENCODE; https://www.encodeproject.org/ENCBS558AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from liver (ENCLB144AIZ)

description:
https://www.encodeproject.org/experiments/ENCSR471SJG/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR471SJG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB144AIZ
size range: 300-500

value: liver

value: Liver from 88 embryonic 12.5 day mice

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS479VPX at ENCODE; https://www.encodeproject.org/ENCBS479VPX/


title: ChIP-seq from heart (ENCLB815QNV)

description:
https://www.encodeproject.org/experiments/ENCSR239TSZ/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 13.5 day mouse heart
experiment encode accession: ENCSR239TSZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR077QRY
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB815QNV
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (13.5 days)

value: heart

value: Heart from embryonic 13.5 day mice

value: embryonic

value: ENCBS490ZWZ at ENCODE; https://www.encodeproject.org/ENCBS490ZWZ/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from liver (ENCLB402EMR)

description:
https://www.encodeproject.org/experiments/ENCSR175KBJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 13.5 day mouse liver
experiment encode accession: ENCSR175KBJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR220PXJ
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB402EMR
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (13.5 days)

value: tissue

value: Liver from embryonic 13.5 day mice

value: ENCBS146FGW at ENCODE; https://www.encodeproject.org/ENCBS146FGW/


title: ChIP-seq from liver (ENCLB327BID)

description:
https://www.encodeproject.org/experiments/ENCSR175KBJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 13.5 day mouse liver
experiment encode accession: ENCSR175KBJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR220PXJ
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB327BID
size range: 300-500

value: ENCBS373XWZ at ENCODE; https://www.encodeproject.org/ENCBS373XWZ/


title: ChIP-seq from heart (ENCLB027UWJ)

description:
https://www.encodeproject.org/experiments/ENCSR239TSZ/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on embryonic 13.5 day mouse heart
experiment encode accession: ENCSR239TSZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR077QRY
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB027UWJ
size range: 300-500

value: healthy

value: ENCBS814PLT at ENCODE; https://www.encodeproject.org/ENCBS814PLT/


title: ChIP-seq from forebrain (ENCLB915QDO)

description:
https://www.encodeproject.org/experiments/ENCSR172XOZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR172XOZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB915QDO
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days)

value: forebrain

value: Forebrain from 24 embyonic 14.5 day mice

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from limb (ENCLB328DEI)

description:
https://www.encodeproject.org/experiments/ENCSR465WTL/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 13.5 day mouse limb
experiment encode accession: ENCSR465WTL
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB328DEI
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (13.5 days)

value: Control

value: limb

value: Limb from embryonic 13.5 day mice

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS896ZED at ENCODE; https://www.encodeproject.org/ENCBS896ZED/


title: ChIP-seq from limb (ENCLB802LAC)

description:
https://www.encodeproject.org/experiments/ENCSR465WTL/
***************
biological replicate number: 1
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 13.5 day mouse limb
experiment encode accession: ENCSR465WTL
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB802LAC
size range: 300-500

value: embryonic

value: ENCBS176PGP at ENCODE; https://www.encodeproject.org/ENCBS176PGP/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from limb (ENCLB487PIH)

description:
https://www.encodeproject.org/experiments/ENCSR176BXC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse limb
experiment encode accession: ENCSR176BXC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR232EOO
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB487PIH
size range: 300-500

value: tissue

value: Limb from 24 embryonic 14.5 day mice

value: ENCBS011AAA at ENCODE; https://www.encodeproject.org/ENCBS011AAA/


title: ChIP-seq from embryonic facial prominence (ENCLB555ZPF)

description:
https://www.encodeproject.org/experiments/ENCSR445HBA/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR445HBA
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB555ZPF
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (12.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from 88 embryonic 12.5 day mice

value: healthy

value: ENCBS399GYO at ENCODE; https://www.encodeproject.org/ENCBS399GYO/


title: ChIP-seq from liver (ENCLB698UVE)

description:
https://www.encodeproject.org/experiments/ENCSR471SJG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR471SJG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB698UVE
size range: 300-500

value: liver

value: Liver from 120 embryonic 12.5 day mice

value: ENCBS236ISK at ENCODE; https://www.encodeproject.org/ENCBS236ISK/


title: WGBS from hindbrain (ENCLB912YBJ)

description:
https://www.encodeproject.org/experiments/ENCSR227RPE/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR227RPE
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB912YBJ
size range: 180-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (15.5 days)

value: hindbrain

value: Hindbrain from 62 embryonic 15.5 day mice

value: ENCBS948UKU at ENCODE; https://www.encodeproject.org/ENCBS948UKU/


title: ChIP-seq from midbrain (ENCLB673UWO)

description:
https://www.encodeproject.org/experiments/ENCSR167ZGV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR167ZGV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR359ETU
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB673UWO
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (13.5 days)

value: midbrain

value: Midbrain from embryonic 13.5 day mice

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS725LVX at ENCODE; https://www.encodeproject.org/ENCBS725LVX/


title: ChIP-seq from embryonic facial prominence (ENCLB520YSG)

description:
https://www.encodeproject.org/experiments/ENCSR445HBA/
***************
biological replicate number: 1
technical replicate number: 2,1
description: Control ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR445HBA
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB520YSG
size range: 300-500

value: Control

value: tissue

value: Embryonic facial prominence from 120 embryonic 12.5 day mice

value: embryonic

value: ENCBS047UII at ENCODE; https://www.encodeproject.org/ENCBS047UII/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from heart (ENCLB845ORC)

description:
https://www.encodeproject.org/experiments/ENCSR235JCY/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR235JCY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR334IOH
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB845ORC
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex postnatal (0 days)

value: heart

value: Heart from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: healthy

value: ENCBS041AAA at ENCODE; https://www.encodeproject.org/ENCBS041AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from hindbrain (ENCLB261WOE)

description:
https://www.encodeproject.org/experiments/ENCSR227RPE/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR227RPE
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB261WOE
size range: 180-500

value: hindbrain

value: Hindbrain from 78 embryonic 15.5 day mice

value: ENCBS958AHU at ENCODE; https://www.encodeproject.org/ENCBS958AHU/


title: ChIP-seq from heart (ENCLB498WZB)

description:
https://www.encodeproject.org/experiments/ENCSR442RYY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR442RYY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB498WZB
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (12.5 days)

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS004ZLN at ENCODE; https://www.encodeproject.org/ENCBS004ZLN/


title: ChIP-seq from heart (ENCLB680UQI)

description:
https://www.encodeproject.org/experiments/ENCSR442RYY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR442RYY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB680UQI
size range: 300-500

value: tissue

value: Heart from 12.5 day mice

value: ENCBS452TDN at ENCODE; https://www.encodeproject.org/ENCBS452TDN/


title: ChIP-seq from lung (ENCLB017TYU)

description:
https://www.encodeproject.org/experiments/ENCSR238ZCJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR238ZCJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR241RIG
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB017TYU
size range: 300-500

value: lung

value: Lung from pooled postnatal 0 day mice

value: ENCBS558AAA at ENCODE; https://www.encodeproject.org/ENCBS558AAA/


title: WGBS from hindbrain (ENCLB395AEQ)

description:
https://www.encodeproject.org/experiments/ENCSR227RPE/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR227RPE
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB395AEQ
size range: 180-500

value: embryonic

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from hindbrain (ENCLB351UNG)

description:
https://www.encodeproject.org/experiments/ENCSR161DAW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse hindbrain
experiment encode accession: ENCSR161DAW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR752KDM
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB351UNG
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (16.5 days)

value: Hindbrain pooled from embyonic 16.5 day mice

value: healthy

value: ENCBS436LSH at ENCODE; https://www.encodeproject.org/ENCBS436LSH/


title: ChIP-seq from midbrain (ENCLB271DMP)

description:
https://www.encodeproject.org/experiments/ENCSR415FCU/
***************
biological replicate number: 1
technical replicate number: 2,1
description: Control ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR415FCU
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB271DMP
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days)

value: Control

value: midbrain

value: Midbrain from 120 embryonic 12.5 day mice

value: ENCBS309WCU at ENCODE; https://www.encodeproject.org/ENCBS309WCU/


title: WGBS from hindbrain (ENCLB750FMV)

description:
https://www.encodeproject.org/experiments/ENCSR227RPE/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR227RPE
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB750FMV
size range: 180-500

value: hindbrain

value: Hindbrain from 62 embryonic 15.5 day mice

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS948UKU at ENCODE; https://www.encodeproject.org/ENCBS948UKU/


title: ChIP-seq from forebrain (ENCLB897MYD)

description:
https://www.encodeproject.org/experiments/ENCSR172XOZ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR172XOZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB897MYD
size range: 300-500

value: forebrain

value: tissue

value: Forebrain from 34 embryonic 14.5 day mice

value: ENCBS014AAA at ENCODE; https://www.encodeproject.org/ENCBS014AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from midbrain (ENCLB272ACX)

description:
https://www.encodeproject.org/experiments/ENCSR415FCU/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR415FCU
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB272ACX
size range: 300-500

value: Midbrain from 88 embryonic 12.5 day mice

value: embryonic

value: ENCBS280TPA at ENCODE; https://www.encodeproject.org/ENCBS280TPA/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from heart (ENCLB293QUJ)

description:
https://www.encodeproject.org/experiments/ENCSR235JCY/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR235JCY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR334IOH
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB293QUJ
size range: 300-500

value: heart

value: Heart from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: healthy

value: ENCBS557AAA at ENCODE; https://www.encodeproject.org/ENCBS557AAA/


title: ChIP-seq from lung (ENCLB652APP)

description:
https://www.encodeproject.org/experiments/ENCSR238ZCJ/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR238ZCJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR241RIG
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB652APP
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: lung

value: Lung from 15 postnatal 0 day mice

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS042AAA at ENCODE; https://www.encodeproject.org/ENCBS042AAA/


title: ChIP-seq from heart (ENCLB261SLW)

description:
https://www.encodeproject.org/experiments/ENCSR406KDB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR406KDB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB261SLW
size range: 300-500

value: tissue

value: ENCBS004ZLN at ENCODE; https://www.encodeproject.org/ENCBS004ZLN/


title: ChIP-seq from heart (ENCLB613KCU)

description:
https://www.encodeproject.org/experiments/ENCSR406KDB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR406KDB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB613KCU
size range: 300-500

value: Heart from 12.5 day mice

value: ENCBS452TDN at ENCODE; https://www.encodeproject.org/ENCBS452TDN/


title: ChIP-seq from neural tube (ENCLB187ONR)

description:
https://www.encodeproject.org/experiments/ENCSR223FDX/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR223FDX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR254WNU
encode release date: 2016-03-17
lab: Bing Ren, UCSD
library encode accession: ENCLB187ONR
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue mixed sex embryo (14.5 days)

value: neural tube

value: Neural tube from 24 embryonic 14.5 day mice

value: embryonic

value: ENCBS013AAA at ENCODE; https://www.encodeproject.org/ENCBS013AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from heart (ENCLB037LJT)

description:
https://www.encodeproject.org/experiments/ENCSR222IHX/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse heart
experiment encode accession: ENCSR222IHX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR317ENO
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB037LJT
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (11.5 days)

value: heart

value: Heart from embryonic 11.5 day mice

value: ENCBS046IMM at ENCODE; https://www.encodeproject.org/ENCBS046IMM/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from neural tube (ENCLB948SWU)

description:
https://www.encodeproject.org/experiments/ENCSR223FDX/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR223FDX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR254WNU
encode release date: 2016-03-17
lab: Bing Ren, UCSD
library encode accession: ENCLB948SWU
size range: 300-500

value: Neural tube from 34 embryonic 14.5 day mice

value: healthy

value: ENCBS025AAA at ENCODE; https://www.encodeproject.org/ENCBS025AAA/


title: ChIP-seq from heart (ENCLB792ZQR)

description:
https://www.encodeproject.org/experiments/ENCSR222IHX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse heart
experiment encode accession: ENCSR222IHX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR317ENO
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB792ZQR
size range: 300-500

value: Heart from 109 embyronic 11.5 day mice

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS225RIF at ENCODE; https://www.encodeproject.org/ENCBS225RIF/


title: ChIP-seq from neural tube (ENCLB853GZM)

description:
https://www.encodeproject.org/experiments/ENCSR375RUA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR375RUA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB853GZM
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (12.5 days)

value: tissue

value: Neural tube from 88 embryonic 12.5 day mice

value: ENCBS254TSW at ENCODE; https://www.encodeproject.org/ENCBS254TSW/


title: ChIP-seq from neural tube (ENCLB471WLU)

description:
https://www.encodeproject.org/experiments/ENCSR375RUA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR375RUA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB471WLU
size range: 300-500

value: neural tube

value: Neural tube from 120 embryonic 12.5 day mice

value: embryonic

value: ENCBS405OOH at ENCODE; https://www.encodeproject.org/ENCBS405OOH/


title: ChIP-seq from intestine (ENCLB661VDR)

description:
https://www.encodeproject.org/experiments/ENCSR159RVN/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR159RVN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB661VDR
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)

value: intestine

value: Intestine from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS560AAA at ENCODE; https://www.encodeproject.org/ENCBS560AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from lung (ENCLB937MUX)

description:
https://www.encodeproject.org/experiments/ENCSR148IGO/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR148IGO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR280SYC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB937MUX
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex embryo (14.5 days)

value: lung

value: Lung from 34 embryonic 14.5 day mice

value: healthy

value: ENCBS018AAA at ENCODE; https://www.encodeproject.org/ENCBS018AAA/


title: ChIP-seq from neural tube (ENCLB502KJV)

description:
https://www.encodeproject.org/experiments/ENCSR370MSK/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR370MSK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB502KJV
size range: 300-500

value: tissue

value: pooled male and female

value: Len Pennacchio, LBNL

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from intestine (ENCLB680KCM)

description:
https://www.encodeproject.org/experiments/ENCSR217TMK/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR217TMK
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB680KCM
size range: 180-500

source_name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (16.5 days)

extract_protocol:
general protocol: https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png
general protocol: https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png
extraction method: Qiagen DNeasy Blood and Tissue Kit
general protocol: https://www.encodeproject.org/documents/9d5f346e-88d3-45e2-b28a-2b26f537490f/@@download/attachment/Ecker_Methyl_protocol_v030114.pdf

value: Intestine from 41 embyonic 16.5 day mice

value: ENCBS072GMU at ENCODE; https://www.encodeproject.org/ENCBS072GMU/


title: ChIP-seq from lung (ENCLB577YMG)

description:
https://www.encodeproject.org/experiments/ENCSR148IGO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR148IGO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR280SYC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB577YMG
size range: 300-500

value: Lung from 24 embryonic 14.5 day mice

value: embryonic

value: ENCBS006AAA at ENCODE; https://www.encodeproject.org/ENCBS006AAA/


title: ChIP-seq from neural tube (ENCLB602ACF)

description:
https://www.encodeproject.org/experiments/ENCSR370MSK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR370MSK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB602ACF
size range: 300-500

value: neural tube

value: Neural tube from 120 embryonic 12.5 day mice

value: ENCBS405OOH at ENCODE; https://www.encodeproject.org/ENCBS405OOH/


title: ChIP-seq from embryonic facial prominence (ENCLB155UWM)

description:
https://www.encodeproject.org/experiments/ENCSR147PYG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR147PYG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742ZUI
encode release date: 2016-03-17
lab: Bing Ren, UCSD
library encode accession: ENCLB155UWM
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (13.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from embryonic 13.5 day mice

value: ENCBS764ZZN at ENCODE; https://www.encodeproject.org/ENCBS764ZZN/


title: ChIP-seq from midbrain (ENCLB480QEL)

description:
https://www.encodeproject.org/experiments/ENCSR167ZGV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR167ZGV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR359ETU
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB480QEL
size range: 300-500

value: midbrain

value: Midbrain from embryonic 13.5 day mice

value: healthy

value: ENCBS185VNZ at ENCODE; https://www.encodeproject.org/ENCBS185VNZ/


title: microRNA-seq from lung (ENCLB029DSE)

description:
https://www.encodeproject.org/experiments/ENCSR161PUT/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse lung
experiment encode accession: ENCSR161PUT
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-02-02
lab: Ali Mortazavi, UCI
library encode accession: ENCLB029DSE
size range: <30

source_name: Mus musculus strain B6NCrl lung tissue postnatal (0 days)

value: lung

value: tissue

value: 2 lungs from pup3 pregnant 1

value: 0 day

value: postnatal

value: not collected

value: Barbara Wold, Caltech

value: ENCBS438DQO at ENCODE; https://www.encodeproject.org/ENCBS438DQO/


title: ChIP-seq from embryonic facial prominence (ENCLB006VTS)

description:
https://www.encodeproject.org/experiments/ENCSR147PYG/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR147PYG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742ZUI
encode release date: 2016-03-17
lab: Bing Ren, UCSD
library encode accession: ENCLB006VTS
size range: 300-500

value: embryonic

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS847MIW at ENCODE; https://www.encodeproject.org/ENCBS847MIW/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from midbrain (ENCLB964CRM)

description:
https://www.encodeproject.org/experiments/ENCSR359ETU/
***************
biological replicate number: 1
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR359ETU
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB964CRM
size range: 300-500

value: Control

value: midbrain


title: microRNA-seq from lung (ENCLB787ROC)

description:
https://www.encodeproject.org/experiments/ENCSR161PUT/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse lung
experiment encode accession: ENCSR161PUT
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-02-02
lab: Ali Mortazavi, UCI
library encode accession: ENCLB787ROC
size range: <30

value: 2 lungs from pup1 pregnant 1

value: ENCBS747AFS at ENCODE; https://www.encodeproject.org/ENCBS747AFS/


title: WGBS from intestine (ENCLB189RSV)

description:
https://www.encodeproject.org/experiments/ENCSR217TMK/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR217TMK
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB189RSV
size range: 180-500

value: intestine

value: Intestine pooled from embyonic 16.5 day mice

value: healthy

value: ENCBS856EWN at ENCODE; https://www.encodeproject.org/ENCBS856EWN/


title: WGBS from intestine (ENCLB956SBR)

description:
https://www.encodeproject.org/experiments/ENCSR217TMK/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR217TMK
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB956SBR
size range: 180-500

value: tissue


title: ChIP-seq from embryonic facial prominence (ENCLB769EVJ)

description:
https://www.encodeproject.org/experiments/ENCSR137NUN/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 15.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR137NUN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR981PSX
encode release date: 2016-03-17
lab: Bing Ren, UCSD
library encode accession: ENCLB769EVJ
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (15.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from 78 embryonic 15.5 day mice

value: ENCBS543BPM at ENCODE; https://www.encodeproject.org/ENCBS543BPM/


title: ChIP-seq from midbrain (ENCLB451DDS)

description:
https://www.encodeproject.org/experiments/ENCSR359ETU/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR359ETU
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB451DDS
size range: 300-500

value: Midbrain from embryonic 13.5 day mice

value: embryonic

value: ENCBS725LVX at ENCODE; https://www.encodeproject.org/ENCBS725LVX/


title: WGBS from midbrain (ENCLB224DGR)

description:
https://www.encodeproject.org/experiments/ENCSR215QTA/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse midbrain
experiment encode accession: ENCSR215QTA
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB224DGR
size range: 180-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (15.5 days)

value: Midbrain from 78 embryonic 15.5 day mice

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS190ETJ at ENCODE; https://www.encodeproject.org/ENCBS190ETJ/


title: ChIP-seq from lung (ENCLB078PFR)

description:
https://www.encodeproject.org/experiments/ENCSR140UEX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR140UEX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB078PFR
size range: 300-500

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (16.5 days)

value: lung

value: Lung pooled from embyonic 16.5 day mice

value: ENCBS377RBN at ENCODE; https://www.encodeproject.org/ENCBS377RBN/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from lung (ENCLB349OIT)

description:
https://www.encodeproject.org/experiments/ENCSR140UEX/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR140UEX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB349OIT
size range: 300-500

value: Lung from 41 embyonic 16.5 day mice

value: healthy

value: ENCBS833ZFI at ENCODE; https://www.encodeproject.org/ENCBS833ZFI/


title: ChIP-seq from kidney (ENCLB325QGF)

description:
https://www.encodeproject.org/experiments/ENCSR140YPL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on postnatal 0 day mouse kidney
experiment encode accession: ENCSR140YPL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR178MLS
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB325QGF
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex postnatal (0 days)

value: kidney

value: tissue

value: Kidney from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS046AAA at ENCODE; https://www.encodeproject.org/ENCBS046AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from intestine (ENCLB165YKV)

description:
https://www.encodeproject.org/experiments/ENCSR217TMK/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR217TMK
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB165YKV
size range: 180-500

value: intestine

value: Intestine from 41 embyonic 16.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS072GMU at ENCODE; https://www.encodeproject.org/ENCBS072GMU/


title: ChIP-seq from kidney (ENCLB751RJI)

description:
https://www.encodeproject.org/experiments/ENCSR140YPL/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on postnatal 0 day mouse kidney
experiment encode accession: ENCSR140YPL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR178MLS
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB751RJI
size range: 300-500

value: Kidney from pooled postnatal 0 day mice

value: Len Pennacchio, LBNL

value: ENCBS562AAA at ENCODE; https://www.encodeproject.org/ENCBS562AAA/


title: ChIP-seq from forebrain (ENCLB652YMU)

description:
https://www.encodeproject.org/experiments/ENCSR345DDI/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR345DDI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB652YMU
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days)

value: forebrain

value: Forebrain from 68 embryonic 12.5 day mice

value: healthy

value: ENCBS617DPG at ENCODE; https://www.encodeproject.org/ENCBS617DPG/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from midbrain (ENCLB624VSR)

description:
https://www.encodeproject.org/experiments/ENCSR215QTA/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse midbrain
experiment encode accession: ENCSR215QTA
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB624VSR
size range: 180-500

value: midbrain

value: tissue

value: Midbrain from 62 embryonic 15.5 day mice

value: ENCBS381PEJ at ENCODE; https://www.encodeproject.org/ENCBS381PEJ/


title: ChIP-seq from midbrain (ENCLB524CMO)

description:
https://www.encodeproject.org/experiments/ENCSR129OJN/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K27me3 ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR129OJN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR359ETU
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB524CMO
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (13.5 days)

value: Midbrain from embryonic 13.5 day mice

value: ENCBS185VNZ at ENCODE; https://www.encodeproject.org/ENCBS185VNZ/


title: ChIP-seq from forebrain (ENCLB925SNC)

description:
https://www.encodeproject.org/experiments/ENCSR345DDI/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR345DDI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB925SNC
size range: 300-500

value: Forebrain from 120 embryonic 12.5 day mice

value: embryonic

value: ENCBS974GPH at ENCODE; https://www.encodeproject.org/ENCBS974GPH/


title: ChIP-seq from midbrain (ENCLB174FSK)

description:
https://www.encodeproject.org/experiments/ENCSR129OJN/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR129OJN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR359ETU
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB174FSK
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: pooled male and female

value: ENCBS725LVX at ENCODE; https://www.encodeproject.org/ENCBS725LVX/


title: ChIP-seq from embryonic facial prominence (ENCLB352ZSA)

description:
https://www.encodeproject.org/experiments/ENCSR316AZB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR316AZB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB352ZSA
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (12.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from 120 embryonic 12.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS047UII at ENCODE; https://www.encodeproject.org/ENCBS047UII/


title: WGBS from midbrain (ENCLB813KHU)

description:
https://www.encodeproject.org/experiments/ENCSR215QTA/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse midbrain
experiment encode accession: ENCSR215QTA
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB813KHU
size range: 180-500

value: Midbrain from 78 embryonic 15.5 day mice

value: healthy

value: ENCBS190ETJ at ENCODE; https://www.encodeproject.org/ENCBS190ETJ/


title: ChIP-seq from forebrain (ENCLB258MKS)

description:
https://www.encodeproject.org/experiments/ENCSR129DIK/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR129DIK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR587JRQ
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB258MKS
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (16.5 days)

value: forebrain

value: tissue

value: Forebrain from 41 embyonic 16.5 day mice

value: ENCBS512LKA at ENCODE; https://www.encodeproject.org/ENCBS512LKA/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from kidney (ENCLB896SRT)

description:
https://www.encodeproject.org/experiments/ENCSR196ENU/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR196ENU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB896SRT
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex embryo (14.5 days)

value: kidney

value: Kidney from pooled embryonic 14.5 day mice

value: ENCBS569AAA at ENCODE; https://www.encodeproject.org/ENCBS569AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from midbrain (ENCLB064PKH)

description:
https://www.encodeproject.org/experiments/ENCSR215QTA/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse midbrain
experiment encode accession: ENCSR215QTA
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB064PKH
size range: 180-500

value: midbrain

value: Midbrain from 62 embryonic 15.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS381PEJ at ENCODE; https://www.encodeproject.org/ENCBS381PEJ/


title: ChIP-seq from kidney (ENCLB997UXY)

description:
https://www.encodeproject.org/experiments/ENCSR196ENU/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR196ENU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB997UXY
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: Len Pennacchio, LBNL

value: ENCBS565AAA at ENCODE; https://www.encodeproject.org/ENCBS565AAA/


title: ChIP-seq from midbrain (ENCLB268POT)

description:
https://www.encodeproject.org/experiments/ENCSR312BOK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR312BOK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB268POT
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days)

value: Midbrain from 120 embryonic 12.5 day mice

value: healthy

value: ENCBS309WCU at ENCODE; https://www.encodeproject.org/ENCBS309WCU/


title: WGBS from lung (ENCLB860KCX)

description:
https://www.encodeproject.org/experiments/ENCSR191UKH/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR191UKH
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB860KCX
size range: 180-500

value: lung

value: tissue

value: Lung from 34 embryonic 14.5 day mice

value: ENCBS018AAA at ENCODE; https://www.encodeproject.org/ENCBS018AAA/


title: ChIP-seq from hindbrain (ENCLB169IJR)

description:
https://www.encodeproject.org/experiments/ENCSR302HOJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR302HOJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB169IJR
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days)

value: hindbrain

value: Hindbrain from 120 embryonic 12.5 day mice

value: ENCBS406RIE at ENCODE; https://www.encodeproject.org/ENCBS406RIE/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from lung (ENCLB385ZCY)

description:
https://www.encodeproject.org/experiments/ENCSR191UKH/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR191UKH
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB385ZCY
size range: 180-500

value: Lung from 24 embryonic 14.5 day mice

value: ENCBS006AAA at ENCODE; https://www.encodeproject.org/ENCBS006AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from forebrain (ENCLB223HZM)

description:
https://www.encodeproject.org/experiments/ENCSR129DIK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR129DIK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR587JRQ
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB223HZM
size range: 300-500

value: forebrain

value: Forebrain pooled from embyonic 16.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS156DHU at ENCODE; https://www.encodeproject.org/ENCBS156DHU/


title: ChIP-seq from forebrain (ENCLB537AGT)

description:
https://www.encodeproject.org/experiments/ENCSR128ZCB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR128ZCB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB537AGT
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days)

value: Forebrain from 24 embyonic 14.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/


title: WGBS from lung (ENCLB113FZP)

description:
https://www.encodeproject.org/experiments/ENCSR191UKH/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR191UKH
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB113FZP
size range: 180-500

value: lung

value: tissue


title: ChIP-seq from hindbrain (ENCLB667ZCO)

description:
https://www.encodeproject.org/experiments/ENCSR302HOJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR302HOJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB667ZCO
size range: 300-500

value: hindbrain

value: Hindbrain from 88 embryonic 12.5 day mice

value: ENCBS022IBY at ENCODE; https://www.encodeproject.org/ENCBS022IBY/


title: ChIP-seq from embryonic facial prominence (ENCLB264YOX)

description:
https://www.encodeproject.org/experiments/ENCSR316AZB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR316AZB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB264YOX
size range: 300-500

value: embryonic facial prominence

value: Embryonic facial prominence from 88 embryonic 12.5 day mice

value: ENCBS399GYO at ENCODE; https://www.encodeproject.org/ENCBS399GYO/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from lung (ENCLB496AMV)

description:
https://www.encodeproject.org/experiments/ENCSR191UKH/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR191UKH
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB496AMV
size range: 180-500

value: Lung from 34 embryonic 14.5 day mice

value: ENCBS018AAA at ENCODE; https://www.encodeproject.org/ENCBS018AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from liver (ENCLB231QAR)

description:
https://www.encodeproject.org/experiments/ENCSR125VVG/
***************
biological replicate number: 2
technical replicate number: 1,3,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR125VVG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742WLX
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB231QAR
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap liver tissue mixed sex embryo (14.5 days)

value: liver

value: Liver from embryonic 14.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS096GAJ at ENCODE; https://www.encodeproject.org/ENCBS096GAJ/


title: ChIP-seq from forebrain (ENCLB187CEK)

description:
https://www.encodeproject.org/experiments/ENCSR297CHD/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR297CHD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB187CEK
size range: 300-500

value: forebrain

value: Forebrain from 68 embryonic 12.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS617DPG at ENCODE; https://www.encodeproject.org/ENCBS617DPG/


title: ChIP-seq from liver (ENCLB383XMB)

description:
https://www.encodeproject.org/experiments/ENCSR133EGP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR133EGP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR274AQL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB383XMB
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days)

value: tissue

value: Liver from 78 embryonic 15.5 day mice

value: ENCBS734ENZ at ENCODE; https://www.encodeproject.org/ENCBS734ENZ/


title: ChIP-seq from forebrain (ENCLB341XJW)

description:
https://www.encodeproject.org/experiments/ENCSR128ZCB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR128ZCB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB341XJW
size range: 300-500

value: Forebrain from 34 embryonic 14.5 day mice

value: ENCBS014AAA at ENCODE; https://www.encodeproject.org/ENCBS014AAA/


title: ChIP-seq from kidney (ENCLB602YHK)

description:
https://www.encodeproject.org/experiments/ENCSR121BWA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR121BWA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB602YHK
size range: 300-500

source_name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (16.5 days)

value: kidney

value: Kidney from 41 embyonic 16.5 day mice

value: ENCBS529OHA at ENCODE; https://www.encodeproject.org/ENCBS529OHA/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB073MIB)

description:
https://www.encodeproject.org/experiments/ENCSR297CHD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR297CHD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB073MIB
size range: 300-500

value: Forebrain from 120 embryonic 12.5 day mice

value: embryonic

value: ENCBS974GPH at ENCODE; https://www.encodeproject.org/ENCBS974GPH/


title: ChIP-seq from heart (ENCLB282MEW)

description:
https://www.encodeproject.org/experiments/ENCSR119YTR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 16.5 day mouse heart
experiment encode accession: ENCSR119YTR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685AMF
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB282MEW
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (16.5 days)

value: heart

value: Heart pooled from embyonic 16.5 day mice

value: pooled male and female

value: ENCBS955JPC at ENCODE; https://www.encodeproject.org/ENCBS955JPC/


title: ChIP-seq from liver (ENCLB722VQA)

description:
https://www.encodeproject.org/experiments/ENCSR295ZLV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR295ZLV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB722VQA
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (12.5 days)

value: liver

value: Liver from 88 embryonic 12.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS479VPX at ENCODE; https://www.encodeproject.org/ENCBS479VPX/


title: ChIP-seq from hindbrain (ENCLB871KUW)

description:
https://www.encodeproject.org/experiments/ENCSR175QZX/
***************
biological replicate number: 2
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR175QZX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB871KUW
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days)

value: hindbrain

value: tissue

value: Hindbrain from 88 embyronic 11.5 day mice

value: ENCBS976DPO at ENCODE; https://www.encodeproject.org/ENCBS976DPO/


title: ChIP-seq from hindbrain (ENCLB477OYT)

description:
https://www.encodeproject.org/experiments/ENCSR175QZX/
***************
biological replicate number: 1
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR175QZX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB477OYT
size range: 300-500

value: Hindbrain from 109 embyronic 11.5 day mice

value: ENCBS199NDR at ENCODE; https://www.encodeproject.org/ENCBS199NDR/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from hindbrain (ENCLB348JUY)

description:
https://www.encodeproject.org/experiments/ENCSR168RTO/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR168RTO
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB348JUY
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex postnatal (0 days)

value: Hindbrain from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS556AAA at ENCODE; https://www.encodeproject.org/ENCBS556AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from hindbrain (ENCLB305BIE)

description:
https://www.encodeproject.org/experiments/ENCSR168RTO/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR168RTO
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB305BIE
size range: 180-500

value: pooled male and female


title: ChIP-seq from neural tube (ENCLB404LMM)

description:
https://www.encodeproject.org/experiments/ENCSR295GGT/
***************
biological replicate number: 1
technical replicate number: 1,3,2
description: Control ChIP-seq on embryonic 13.5 day mouse neural tube
experiment encode accession: ENCSR295GGT
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB404LMM
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (13.5 days)

value: Control

value: neural tube

value: Neural tube from embryonic 13.5 day mice

value: embryonic

value: ENCBS956BQY at ENCODE; https://www.encodeproject.org/ENCBS956BQY/


title: ChIP-seq from heart (ENCLB877QAA)

description:
https://www.encodeproject.org/experiments/ENCSR119YTR/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 16.5 day mouse heart
experiment encode accession: ENCSR119YTR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685AMF
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB877QAA
size range: 300-500

value: heart

value: tissue

value: Heart from 41 embyonic 16.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS217XWR at ENCODE; https://www.encodeproject.org/ENCBS217XWR/


title: ChIP-seq from liver (ENCLB752HFX)

description:
https://www.encodeproject.org/experiments/ENCSR295ZLV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR295ZLV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB752HFX
size range: 300-500

value: liver

value: Liver from 120 embryonic 12.5 day mice

value: ENCBS236ISK at ENCODE; https://www.encodeproject.org/ENCBS236ISK/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from kidney (ENCLB405ORK)

description:
https://www.encodeproject.org/experiments/ENCSR121BWA/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR121BWA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB405ORK
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: kidney

value: Kidney pooled from embyonic 16.5 day mice

value: ENCBS519MUD at ENCODE; https://www.encodeproject.org/ENCBS519MUD/


title: ChIP-seq from limb (ENCLB074EHW)

description:
https://www.encodeproject.org/experiments/ENCSR115FTP/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR115FTP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB074EHW
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (11.5 days)

value: limb

value: Limb from 88 embyronic 11.5 day mice

value: pooled male and female

value: ENCBS681XPR at ENCODE; https://www.encodeproject.org/ENCBS681XPR/


title: ChIP-seq from midbrain (ENCLB711UAR)

description:
https://www.encodeproject.org/experiments/ENCSR312BOK/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR312BOK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB711UAR
size range: 300-500

value: midbrain

value: Midbrain from 88 embryonic 12.5 day mice

value: embryonic

value: ENCBS280TPA at ENCODE; https://www.encodeproject.org/ENCBS280TPA/


title: WGBS from hindbrain (ENCLB173CLJ)

description:
https://www.encodeproject.org/experiments/ENCSR168RTO/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR168RTO
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB173CLJ
size range: 180-500

value: hindbrain

value: tissue

value: Hindbrain from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS040AAA at ENCODE; https://www.encodeproject.org/ENCBS040AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from limb (ENCLB862JUY)

description:
https://www.encodeproject.org/experiments/ENCSR115FTP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR115FTP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB862JUY
size range: 300-500

value: limb

value: Limb from 109 embyronic 11.5 day mice

value: ENCBS066IEL at ENCODE; https://www.encodeproject.org/ENCBS066IEL/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from hindbrain (ENCLB889KGV)

description:
https://www.encodeproject.org/experiments/ENCSR168RTO/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR168RTO
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB889KGV
size range: 180-500

value: pooled male and female


title: ChIP-seq from hindbrain (ENCLB988AQB)

description:
https://www.encodeproject.org/experiments/ENCSR110TIW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 16.5 day mouse hindbrain
experiment encode accession: ENCSR110TIW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR752KDM
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB988AQB
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (16.5 days)

value: Hindbrain pooled from embyonic 16.5 day mice

value: ENCBS436LSH at ENCODE; https://www.encodeproject.org/ENCBS436LSH/


title: microRNA-seq from hindbrain (ENCLB052WMR)

description:
https://www.encodeproject.org/experiments/ENCSR110GMH/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR110GMH
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB052WMR
size range: <30

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (15.5 days)

value: Hindbrain from 62 embryonic 15.5 day mice

value: embryonic

value: ENCBS948UKU at ENCODE; https://www.encodeproject.org/ENCBS948UKU/


title: ChIP-seq from neural tube (ENCLB859DBW)

description:
https://www.encodeproject.org/experiments/ENCSR263CKR/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR263CKR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB859DBW
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (12.5 days)

value: neural tube

value: tissue

value: Neural tube from 88 embryonic 12.5 day mice

value: ENCBS254TSW at ENCODE; https://www.encodeproject.org/ENCBS254TSW/


title: ChIP-seq from neural tube (ENCLB904ZOT)

description:
https://www.encodeproject.org/experiments/ENCSR263CKR/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR263CKR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB904ZOT
size range: 300-500

value: Neural tube from 120 embryonic 12.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS405OOH at ENCODE; https://www.encodeproject.org/ENCBS405OOH/


title: microRNA-seq from hindbrain (ENCLB480XTX)

description:
https://www.encodeproject.org/experiments/ENCSR110GMH/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR110GMH
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB480XTX
size range: <30

value: hindbrain

value: Hindbrain from 78 embryonic 15.5 day mice

value: ENCBS958AHU at ENCODE; https://www.encodeproject.org/ENCBS958AHU/


title: ChIP-seq from hindbrain (ENCLB617JAD)

description:
https://www.encodeproject.org/experiments/ENCSR161DAW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse hindbrain
experiment encode accession: ENCSR161DAW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR752KDM
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB617JAD
size range: 300-500

value: Hindbrain from 37 embryonic 16.5 day mice

value: pooled male and female

value: ENCBS281ZLI at ENCODE; https://www.encodeproject.org/ENCBS281ZLI/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from intestine (ENCLB121EVS)

description:
https://www.encodeproject.org/experiments/ENCSR159RVN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR159RVN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB121EVS
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)

value: intestine

value: Intestine from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS044AAA at ENCODE; https://www.encodeproject.org/ENCBS044AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from embryonic facial prominence (ENCLB117BNP)

description:
https://www.encodeproject.org/experiments/ENCSR257GTR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR257GTR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB117BNP
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (12.5 days)

value: embryonic facial prominence

value: tissue

value: Embryonic facial prominence from 120 embryonic 12.5 day mice

value: embryonic

value: ENCBS047UII at ENCODE; https://www.encodeproject.org/ENCBS047UII/


title: ChIP-seq from lung (ENCLB419JDC)

description:
https://www.encodeproject.org/experiments/ENCSR108TWE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR108TWE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR280SYC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB419JDC
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex embryo (14.5 days)

value: lung

value: Lung from 34 embryonic 14.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS018AAA at ENCODE; https://www.encodeproject.org/ENCBS018AAA/


title: ChIP-seq from embryonic facial prominence (ENCLB812IQO)

description:
https://www.encodeproject.org/experiments/ENCSR257GTR/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR257GTR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB812IQO
size range: 300-500

value: Embryonic facial prominence from 88 embryonic 12.5 day mice

value: pooled male and female

value: ENCBS399GYO at ENCODE; https://www.encodeproject.org/ENCBS399GYO/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from embryonic facial prominence (ENCLB151WGI)

description:
https://www.encodeproject.org/experiments/ENCSR582IBX/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR582IBX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB151WGI
size range: 300-500


title: ChIP-seq from lung (ENCLB507DSJ)

description:
https://www.encodeproject.org/experiments/ENCSR108TWE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR108TWE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR280SYC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB507DSJ
size range: 300-500

value: Lung from 24 embryonic 14.5 day mice

value: ENCBS006AAA at ENCODE; https://www.encodeproject.org/ENCBS006AAA/


title: ChIP-seq from midbrain (ENCLB599HSI)

description:
https://www.encodeproject.org/experiments/ENCSR252ONR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR252ONR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB599HSI
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days)

value: midbrain

value: Midbrain from 120 embryonic 12.5 day mice

value: ENCBS309WCU at ENCODE; https://www.encodeproject.org/ENCBS309WCU/


title: ChIP-seq from forebrain (ENCLB003EYP)

description:
https://www.encodeproject.org/experiments/ENCSR243JOL/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR243JOL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB003EYP
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days)

value: forebrain

value: tissue

value: Forebrain from 68 embryonic 12.5 day mice

value: ENCBS617DPG at ENCODE; https://www.encodeproject.org/ENCBS617DPG/


title: ChIP-seq from neural tube (ENCLB097DQN)

description:
https://www.encodeproject.org/experiments/ENCSR099BYW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR099BYW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR254WNU
encode release date: 2014-12-08
lab: Bing Ren, UCSD
library encode accession: ENCLB097DQN
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue mixed sex embryo (14.5 days)

value: neural tube

value: Neural tube from 24 embryonic 14.5 day mice

value: embryonic

value: ENCBS013AAA at ENCODE; https://www.encodeproject.org/ENCBS013AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/