title: LS037

city: Santa Cruz

first: Lily

last: Shiue

address: 1156 High Street

department: MCD Biology

institute: UCSC

data_processing:
Illumina Casava1.8.2 software used for basecalling.
PairedEnd sequenced reads were trimmed to 50x50bp and each read-end was mapped with bowtie to the hg19 SpliceTrap supplied target of exon trios.
The SpliceTrap tools were run to create the Fragment Size Model (FSM) and the Inclusion Ratio Model (IRM). SpliceTrap was used to analyze splicing changes with the parameters: j15, ch0.1, ir0.1, IRMyes.
The SpliceTrap estimated inclusion ratios were filtered with the "Middle" (M) cutoff level and a junction count minimum requirement of 15 reads
A modified version of the SpliceChange script was run to extract events where the absolute difference in Inclusion Ratio (IR), measured simply as abs(IR1 - IR2), was 0.1 or greater between conditions to be compared.
Genome_build: hg19
Supplementary_files_format_and_content: RNAseq splicing events.xlsx.  The calculated "delta" is the difference between the IRs (see above) of the two samples being compared.

source_name: macrophage sibling

growth_protocol: Human monocytes were isolated from buffy coats of healthy donors with an antibody to CD14, conjugated to magnetic beads to allow for MACS sorting. Cells were cultured in RPMI media supplemented with 10% FCS and 0.01 mg/mL glutamine at 37°C and 5% CO2.

extract_protocol:
total RNA was extracted using Trizol (Life Technologies) and the RNeasy Mini Kit (Qiagen) according to manufacturer’s instructions.
the non-ribosomal fraction of 3 μg of total RNA (isolated using a Ribo-Zero rRNA removal Kit, Epicentre) was used as input to the TruSeq RNA Sample Preparation kit (Illumina). Size selections were performed before and after cDNA amplification on an E-gel Imager using 2% E-gel SizeSelect gels (Invitrogen).

treatment_protocol: Differentiation of primary CD14+ monocytes to pro-inflammatory macrophages was achieved by stimulating with 5 ng/mL GM-CSF for 3 days.

tag: genotype

value: QKI+/+

value: differentiated CD14+ cells

tag: treatment

value: 3 days with GM-CSF


title: LS036

status: Public on Jan 04 2016

type: SRA

state: CA

country: USA

library_source: transcriptomic

molecule: total RNA

organism: Homo sapiens

source_name: macrophage patient

value: QKI+/-

tag: cell type


title: LS035

source_name: PB monocyte sibling

value: CD14+ cells from peripheral blood


title: Input_Kless_Dox.wig

city: Wuerzburg

first: Martin

last: Eilers

address: Am Hubland

department: Chair for Biochemistry and Molecular Biology

country: Germany

institute: University of Wuerzburg

library_source: genomic

data_processing:
Basecalling was performed with the real time analysis (RTA) package within the Genome Analyzer Sequencing Control Software (SCS2.10).
Demultiplexing and generation of Fastq files was done with the CASAVA software only considering high quality sequences (PF-cluster).
Reads were aligned to the human genome (hg19) with BOWTIE v0.12.8 using  standard-options
Peaks were called and wig-files were produced with MACS-1.4.2
All further analysis were performed in R or Bedtools
Genome_build: hg19
Supplementary_files_format_and_content: MACS-output files in wig-format are provided.

molecule: genomic DNA

source_name: IMEC cell line

extract_protocol:
Where indicated, MYC was induced with doxycycline (pInducer samples) or treated with EtOH as solvent control. Cells were crosslinked with 1% formaldehyde at 37°C for 10min. Cells were lysed and after centrifugation nuclei were re-suspended in RIPA buffer. DNA was sonicated with a Branson sonifier to obtain DNA fragments at nucleosomal size. Chromatin bound to target proteins (HA-tag) was preciüitated by incubation with Protein A dynabeads beads overnight. After several washings chromatin was eluted with 1 % SDS and  crosslinking was reverted overnight. DNA was purified by Phenol/Chloroform extraction and enrichments were checked by qPCR.
Libraries for ChIP-seq samples were contructed following manufactor's intructions using the NEBNext ChIP-Seq Library Prep Master Mix Set for Illumina (E6240). Briefly, ChIP DNA was end repaired,  A-tailed  and Illumina adaptors were ligated. DNA fragments of about 200 bps were cut out of a agarose gel and extracted with a Qiagen PCR purification column. Size-selected DNA was amplified with 18 PCR cycles.

tag: generation of cells

value: primary breast epithelial cells

tag: antibody

tag: dox treatment

value: DOX

tag: construct


title: ha_chip_kless.wig

value: HA

value: pRRL-MYC-Kless-HA


title: LS034

source_name: PB monocyte patient


title: S2p_WT_EtOH.wig

value: EtOH


title: input.wig

value: pRRL-MYC-WT-HA


title: ha_chip_wt.wig


title: N20_WT_Dox.wig


title: N20_WT_EtOH.wig


title: Activated_input_7_12

city: Bethesda

first: David

last: Sturgill

state: MARYLAND

address: Building 41, Rm B622

department: NCI

institute: NIH

data_processing:
ChIP-Seq Reads were mapped to the human genome with Bowtie2 v.2.1.0 (Langmead & Salzberg, 2012) with default parameters.  RNA-Seq reads were mapped using TopHat v.2.0.11 (Trapnell et al, 2010) with Bowtie2 v.2.2.1 (Langmead & Salzberg, 2012). Parameters used were: unique mapping only (-g 1), and supplying the UCSC genome annotation for hg19 from iGenomes (Illumina, San Diego, CA).
Gene level expression estimates in units of expected Fragments per Kilobase per Million Mapped Reads (FPKM) were calculated with Cuffdiff v.2.1.1 (Trapnell et al, 2010), with default parameters. Values were quantified against the UCSC genome annotation for hg19 from iGenomes (Illumina, San Diego, CA).
Enrichment in each ChIP sample relative to background was calculated using MACS2 (v. 2.1.0.20140616)  “callpeak” with default parameters (Feng et al, 2012).  Non-specific IgG ChIP was used as background for CTCF-ChIP, and input was used as background for MedIP.  For CTCF sites, raw MACS peaks in each experiment were merged and set to +/- 150bp surrounding the summit, and called present if enrichment was greater than background.
Sequencing depth normalized genome coverage tracks in RPKM for each medIP experiment sample were generated in bigwig format with deepTools (Ramirez et al, 2014), using the 'ignoreduplicates' option.
Genome_build: hg19
Supplementary_files_format_and_content: fpkm_tracking files contain gene expression estimates from Cufflinks in text files for RNA-Seq data
Supplementary_files_format_and_content: BED files contain peaks called in CTCF ChIP-Seq data
Supplementary_files_format_and_content: bw files are depth normalized coverage tracks in bigWig format for MeDIP data

source_name: activated T-lymphocytes

growth_protocol: Naïve peripheral CD4+ T cells were purified from human blood through Ficoll Paque and magnetic bead negative depletion according to the manufacturer's directions (Miltenyi Biotech, 130-094-131). Naive CD4+ T cells were cultured in RPMI supplemented with 10% FBS, 55mM b-Mercaptoethanol, and 30 units/ml human interleukin 2 (IL-2).

extract_protocol:
To generate nuclear extracts, naïve and activated CD4+ T cells were pelleted, washed once in cold PBS, resuspended in 100 µl hypotonic lysis buffer (10 mM HEPES pH 7.9, 10 mM KCl, 0.1 mM EDTA) supplemented with 2 mM Na3VO4 and 1x Halt protease inhibitor cocktail (Thermo Scientific), and placed on ice for 10 minutes. NP-40 was then added to a final concentration of 0.4% and vortexed vigorously for 15 seconds. Samples were centrifuged for 6 minutes at 3300 x g at 4oC and pellets were resuspended in 60 µl nuclear lysis buffer (20 mM HEPES pH 7.9, 0.4 M NaCl, 1 mM EDTA, 10% glycerol) supplemented with 2 mM Na3VO4 and 1x Halt protease inhibitor cocktail. Lysates were passed through a 23 gauge needle 4 times and left on ice for 15 minutes. After vortexing for 15 seconds, samples were centrifuged at maximum speed (20,000 x g) for 5 minutes at 4oC and supernatants containing nuclear proteins were transferred to fresh tubes. Protein concentrations were determined with the Pierce BCA Protein Assay (Thermo Scientific). 7.5-15 ug of nuclear lysates were resolved with a 3-8% NuPage Tris-Acetate gel (Invitrogen) and transferred to PVDF.
Sequencing libraries were constructed from DNA samples with the Illumina TruSeq V3 library construction protocol.

treatment_protocol: Cells were either left to rest in IL-2 containing media (naïve) or activated with antibodies directed against CD3 and CD28 receptors for 2-3 days.

value: T-lymphocyte

tag: differentiation stage

value: Activated


title: Activated_input_10_12


title: plus_mg_wt_dox.fastq

data_processing:
Basecalling was performed with the real time analysis (RTA) package within the Genome Analyzer Sequencing Control Software (SCS2.10).
Demultiplexing and generation of Fastq files was done with the CASAVA software only considering high quality sequences (PF-cluster).
Reads were aligned to the human genome (hg19) with BOWTIE v0.12.8 using  standard-options
Differential expression and statistical inference was done using EdgeR.
Genome_build: hg19
Supplementary_files_format_and_content: The txt-file contains a table showing the differential expression (as log FoldChange) of ensemble annotated genes (ensemble gene ids, in rows) between samples (=experimental conditions) and the calculated p-value and adjusted p-value for each FoldChange.

molecule: polyA RNA

growth_protocol: IMEC cell lines were grown in DMEM/F-12 with appropriate supplements.

extract_protocol:
Total RNA was extracted using the RNeasy Mini Kit (Qiagen) including on-column DNase digestion. Poly-A RNA was isolated from total RNA using the NEBNext Poly(A)mRNA Magnetic Isolation Module (E7490).
Libraries for the RNA-seq samples were constructed using the NEBNext Library Prep Kit (6100) following the instruction manual. Briefly, poly-A RNA was fragmented to generate 200 nucleotides long fragments. First and second strand cDNA synthesis was performed and the resulting cDNA was end-repaired, ligated to NEBNext adaptors. The cDNA was size selected using agarose gels and amplified by PCR. For the resulting RNA-seq libraries, amplicon sizes and quantities were determined using the Biorad Experion system. Libraries were sequenced on an Illumina Genome Analyzer IIx following the manufacture’s instructions.

treatment_protocol: Cell were infected with the indicated doxycycline-inducible constructs and treated with Dox or EtOH as solvent control.

tag: infected construct

tag: etoh/dox treatment

value: Dox

tag: mg/etoh treatment

tag: replicates


title: plus_mg_wt_etoh.fastq


title: plus_mg_swap_etoh.fastq


title: Activated_rIgG_ChIP-Seq_10_12

value: Normal Rabbit IgG [2729] (Cell signaling) Lot #5


title: plus_mg_swap_dox.fastq


title: plus_mg_kless_etoh.fastq


title: Naive_input_7_12

source_name: naïve T-lymphocytes

value: Naïve


title: Naive_rIgG_ChIP-Seq_10_12


title: Input_Kless_EtOH.wig


title: Activated_hmC_medIP-Seq_7_12

value: anti-5-hydroxymethylcytidine [A-1018] (Epigentek)  Lot #A503009


title: minus_mg_swap_etoh.fastq

value: MG


title: minus_mg_wt_etoh.fastq


title: Naive_hmC_medIP-Seq_7_12


title: Activated_CTCF_ChIP-Seq_10_12

value: anti-CTCF [D31H2] (Cell signaling) Lot #1


title: minus_mg_wt_dox.fastq


title: Naive_mC_medIP-Seq_10_12

value: anti-5-methylcytidine [A-1014] (Epigentek) Lot #407008


title: minus_mg_kless_etoh.fastq


title: minus_mg_kless_dox.fastq


title: Naive_Tcell_RNA-Seq

extract_protocol:
Total RNA for expression profiling was isolated with the Qiagen RNeasy Mini Kit according to the manufacturer's instruction
Total RNA was used for library construction with the Illumina TruSeq RNA Protocol RS-930-2001 protocol (Illumina, San Diego, CA), generating a poly-A+ sequencing library via poly-T oligo-attached magnetic beads


title: Activated_Tcell_RNA-Seq


title: Naive_CTCF_ChIP-Seq_10_12


title: siskp2_wt_dox

tag: sirna


title: Activated_mC_medIP-Seq_10_12

value: anti-5-methylcytidine [A-1014] (Epigentek)  Lot #407008


title: plus_mg_kless_dox.fastq


title: patient#1 ReACp53 treated rep2

city: Los Angeles

first: Sanaz

last: Memarzadeh

state: CA - California

address: 555 Westwood Plaza

department: Departments of Obstetrics and Gynecology

institute: University of California, Los Angeles

data_processing:
RNAseq reads were mapped to  hg19 using tophat(Version 2.0.6) wiith Ensembl75 gene annotation
uniquely mapped reads were counted using htseq-count( version 0.5.3p9 with ensembl 75 gene sets
genes with 0 counts across all samples were filtered out
Gene differential expression analysis was performed using DESeq2( version  1.4.5)
Genome_build: hg19
Supplementary_files_format_and_content: excel file were generated using htseq-count, presenting gene counts

source_name: patient#1 primary high-grade serous ovarian carcinoma cells grown as 3D organoid

growth_protocol: Cells were resuspended in a 1:1.33 mixture of PrEGM media (Lonza CC-3166) and Matrigel (BD Biosciences). 70 µl of the PrEGM:Matrigel mixture, containing a total of 100’000 cells, was plated in triplicates around the rim of a 24-well cell culture dish and overlaid with 1ml PrEGM.

extract_protocol:
RNA was extracted using the Qiagen RNeasy microkit according to manufacturer’s instruction and purity was assessed by absorbance measurements. Total RNA was quantified with the Qubit RNA HS assay kit (Invitrogen) and converted to cDNA using SuperScript III (Invitrogen) after a DNase treatment.
mRNA libraries were prepared for each triplicate with the TruSeq RNA v2 kit following Illumina instructions. Sequencing was performed at the UCLA BSCRC High Throughput Sequencing Facility.

treatment_protocol: After a 2 days incubation at 37°C and 8% CO2, medium was removed and exchanged with a 0.5ml of fresh PrEGM containing either vehicle (DMSO) or 5 µM ReACp53. After 24 hours, a second treatment was performed by completely removing the medium and replenishing with fresh PrEGM containing vehicle or ReACp53. After two treatments (48h total), cells were released by dispase treatment (Invitrogen) and resuspended in RNALater (Invitrogen).

tag: clinical specimen

tag: tissue

value: ovary

tag: tumor type

value: high-grade serous ovarian cancer

tag: tumor stage

value: IIIB

tag: p53 status


title: patient#1  Vehicle treated rep3

tag: treatment

value: vehicle


title: Naive_input_10_12

tag: cell type


title: rep2_wt_etoh


title: patient#1  Vehicle treated rep1


title: patient#1 ReACp53 treated rep3


title: rep2_wt_dox


title: siskp2_wt_etoh


title: patient#8 ReACp53 treated rep3

source_name: patient#8 primary endometrioid ovarian cancer cells grown as 3D organoid

value: endometrioid ovarian cancer

value: I


title: rep2_vector_dox


title: patient#1 ReACp53 treated rep1


title: rep2_kless_etoh

value: EtOH


title: sictrl_wt_dox

value: siCtrl


title: minus_mg_swap_dox.fastq


title: patient#8 ReACp53 treated rep1


title: rep2_kless_dox


title: rep1_wt_etoh


title: rep1_wt_dox


title: sictrl_wt_etoh


title: patient#8 Vehicle treated rep2


title: patient#8 Vehicle treated rep1


title: patient#8 Vehicle treated rep3


title: rep1_vector_dox


title: OVCAR3 ReACp53 treated rep3

source_name: OVCAR3 cell line grown as 3D organoid

tag: cell line

value: ovarian cancer


title: rep1_kless_dox

value: Dox


title: OVCAR3 ReACp53 treated rep2


title: patient#1  Vehicle treated rep2


title: KI_Bcell_Spleen_RNA-Seq

data_processing:
Reads were mapped to the mouse reference genome (mm10) using TopHat v.2.0.11 with Bowtie2 v.2.2.1. The UCSC transcripts for mm10 from iGenomes (Illumina, San Diego, CA) was used for all analysis. TopHat alignments were performed supplying the gene models (the –G option), and reporting one alignment per read (the –g 1 option)
Gene level expression estimates in units of expected Fragments per Kilobase per Million Mapped Reads (FPKM) were calculated with Cufflinks v.2.2.1 using default parameters to generate a probabilistic measure of the expected number of fragments from each transcript.
Genome_build: mm10
Supplementary_files_format_and_content: fpkm_tracking file contains Cufflinks output

organism: Mus musculus

source_name: Spleen B-lymphocytes

growth_protocol: Naïve splenocytes were enriched for CD4+ T cells by negative selection using the EasySep Mouse CD4+ T-cell isolation Kit (Stem Cell Technologies) according to manufacturer’s instructions. CD4+ T cells were then maintained in phenol-free RPMI 1640 medium supplemented with 10% charcoal stripped-FBS (Gemini Bioproducts), 1 x Non-Essential Amino Acids, 1 x Vitamin solution, 1 mM sodium pyruvate, 10 mM HEPES, penicillin/streptomycin (all Invitrogen) and 50 μM β-mercaptoethanol (Sigma) for up to 48 h before DSB induction. Medium was supplemented with 2 ng/ml IL-7 (R&D Systems) to maintain T cells in the absence of proliferation.

extract_protocol:
Total RNA was used for library construction with the Illumina TruSeq strand mRNA Low Input Protocol RS-122-2101 protocol (Illumina, San Diego, CA)
Total RNA from FACS-sorted CD4+ splenic or thymic T cells and IgM+ splenic B cells from female littermates was extracted using the RNeasy Mini Kit (Qiagen)
For library construction, 0.1 - 1 µg of total RNA was subjected to mRNA capture with oligo-dT coated magnetic beads. The mRNA was fragmented, followed by random-primed cDNA synthesis, standard Illumina library prep with end-repair, adapter ligation and PCR amplification.

treatment_protocol: For DSB induction, cultures were treated with 1 μM 4-OH-TAM. 4OH-TAM was washed out after 3 h and cells were maintained for the indicated time frames

value: Spleen

value: T-lymphocyte

tag: genotype

value: ippo knock-in


title: KI_Tcell_Spleen_RNA-Seq

source_name: Spleen T-lymphocytes


title: OVCAR3 ReACp53 treated rep1


title: OVCAR3 Vehicle treated rep3


title: OVCAR3 Vehicle treated rep1


title: WT_Bcell_Spleen_RNA-Seq

value: Wild-type


title: OVCAR3 Vehicle treated rep2


title: MCF7 ReACp53 treated rep2

source_name: MCF7 cell line grown as 3D organoid

value: breast

value: breast cancer

value: WT


title: MCF7 ReACp53 treated rep1


title: patient#8 ReACp53 treated rep2

value: ovary


title: WT_Tcell_Spleen_RNA-Seq


title: Mock_RNAseq4

city: Princeton

first: Mike

last: Levine

state: NJ

address: South Dr

department: Lewis Sigler Institute

institute: Princeton University

data_processing:
OLB 1.9/CASAVA_v1.8.2 were used for base calling
Barcodes were separated using Novobarcode
Sequences were aligned to mm10 genome using Tophat/Bowtie2 with default settings
Normalized abundance was generated by RSEM
Genome_build: mm10
Supplementary_files_format_and_content: Excel sheet includes FPKM for all genes per sample

source_name: Mouse Embryonic Stem Cells

growth_protocol: E14 mESCs were maintained on standard mESC protocol from Jaenisch lab

extract_protocol:
For RBF libraries, cell extract was incubated with Rnase A+T1, separated on a sucrose gradient to obtain 80S ribosomes, RNA was isolated by phenol-chloroform and ran on a gel to acquire 26-32nt RNAs. RNAseq libraries were made from RNA isolated using Trizol + isopropanol precipitation.
Libraries were prepared using protocol described in Heyer et al. 2015 NAR

treatment_protocol: Cells were transfected with either GFP esiRNA or LNA containing oligos antisense to tRF-GG

tag: transfection

value: mock


title: WT_Tcell_Thymus_RNA-Seq

source_name: Thymus T-lymphocytes

extract_protocol:
Total RNA was used for library construction with the Illumina TruSeq RNA Protocol RS-930-2001 protocol (Illumina, San Diego, CA).
Total RNA from FACS-sorted CD4+ splenic or thymic T cells and IgM+ splenic B cells from female littermates was extracted using the RNeasy Mini Kit (Qiagen)
For library construction, 0.1 - 1 µg of total RNA was subjected to mRNA capture with oligo-dT coated magnetic beads. The mRNA was fragmented, followed by random-primed cDNA synthesis, standard Illumina library prep with end-repair, adapter ligation and PCR amplification.

value: Thymus


title: Mock_RNAseq3


title: MCF7 Vehicle treated rep3

value: vehicle


title: Mock_RNAseq2


title: Mock_RNAseq1


title: rep1_kless_etoh


title: MCF7 Vehicle treated rep2


title: GFP_RNAseq3

value: GFP-esiRNA


title: UC-06_Cauda_tissue

city: Chicago

first: Ann

last: Harris

state: Illinois

address: 2430 N Halsted

institute: Northwestern University

data_processing:
Sequences were mapped back to human genome using TopHat (v2.0.9) (Trapnell et al., 2012 Nat Protoc 2012;7:562-578).
Aligned reads were then processed by Cufflinks (v2.1.1) to assemble expressed genes and transcripts against the UCSC hg19 gene structure annotation and to estimate expression levels for each transcript.
Assembly files for each of the samples were then merged to create a single transcriptome annotation and differentially expressed genes identified by Cuffdiff. Samples were then normalized and expressed as FPKM and both a test statistic (P-value) and an adjusted P-value (q-value) were calculated.
FPKM values were subject to principle component analysis.
Biological processes associated with differentially expressed genes were identified using DAVID.
Genome_build: hg19
Supplementary_files_format_and_content: Text files include FPKM values for each sample.

extract_protocol:
The caput, corpus and cauda region of the human epididymis, were separated and segments of each snap frozen in liquid nitrogen. Adult human epididymis epithelial HEE) cell cultures were also established from fresh tissue. RNA was extracted using Trizol. RNA quality was confirmed by Nanodrop measurement of OD 260/280 and 260/230 ratios and stored at -800C under ethanol. 1ug RNA was used for RNA-seq library preparation.
RNA-seq libraries were prepared using the TruSeq RNA Sample Preparation Kit v2 (Low-Throughput protocol, Illumina).

tag: patient id

tag: patient status

value: undergoing inguinal radical orchiectomy for a clinical diagnosis of testicular cancer

tag: age

value: adult (22-36yrs range)

tag: tissue origin

value: Epididymis

tag: cell subtype

value: Cauda

tag: sample type

value: Tissue


title: GFP_RNAseq4


title: MCF7 Vehicle treated rep1


title: UC-05_Cauda_tissue


title: UC-06_Corpus_tissue

value: Corpus


title: GFP_RNAseq1


title: tRFGG_RNAseq4

value: LNA-containing oligos antisense to tRF-GG


title: UC-06_Caput_tissue

value: Caput


title: KI_Tcell_Thymus_RNA-Seq

value: T-lymphocyte

value: ippo knock-in


title: tRFGG_RNAseq3


title: UC-05_Caput_tissue


title: tRFGG_RNAseq2


title: GFP_RNAseq2


title: UC-05_Corpus_tissue


title: Mock_RBF4

data_processing:
Library strategy: ribosome profiling
OLB 1.9/CASAVA_v1.8.2 were used for base calling
Barcodes were separated using Novobarcode
Sequences were aligned to mm10 genome using Tophat/Bowtie2 with default settings
Normalized abundance was generated by RSEM
Genome_build: mm10
Supplementary_files_format_and_content: Excel sheet includes FPKM for all genes per sample


title: UC-06_Cauda_cell

source_name: Cauda-derived cell culture

value: Human epididymis epithelial (HEE) cell cultures


title: Mock_RBF3


title: Mock_RBF2


title: UC-09_Corpus_cell

source_name: Corpus-derived cell culture


title: tRFGG_RNAseq1


title: UC-05_Cauda_cell


title: UC-06_Corpus_cell


title: UC-05_Corpus_cell


title: UC-09_Caput_cell

source_name: Caput-derived cell culture


title: UC-06_Caput_cell


title: GFP_RBF3


title: GFP_RBF4


title: Mock_RBF1


title: GFP_RBF2


title: GFP_RBF1


title: tRFGG_RBF4


title: UC-09_Cauda_cell


title: tRFGG_RBF3


title: H3K4me3_wt_input

city: Beijing

first: xiaomeng

last: liu

state: Beijing

address: Yiheyuan Road No.5

country: China

institute: Biodynamics Optical Imaging Center (BIOPIC), Peking University

data_processing:
Illumina CASAVA version 1.8 were used to the basecalling.
Reads were trimmed to remove the adapter sequences and low quality bases.
Clean reads were aligned to refference genome (hg19) using TopHat and Cufflinks.
Differencial expression genes were analysed by Cuffdiff.
Reads were used to call peaks by MACS(v2) software
Genome_build: hg19
Supplementary_files_format_and_content: txt files which include the FPKM information of each RNA-Seq sample
Supplementary_files_format_and_content: peak.bed files which include the peaks called by MACS(v2)

source_name: Mesenchymal stem cell

extract_protocol:
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody(anti-H3K4me3 (CST, 9751s) and normal rabbit IgG (Santa Cruz, SC-2027)).
Libraries were prepared by library construction NEBNext kit according to the manufacturer’s protocols.

tag: genotype/variation

value: WT

tag: antibody


title: tRFGG_RBF1


title: H3K4me3_wt_rep2


title: H3K4me3_ko_rep2

value: KO


title: H3K4me3_wt_rep1


title: H3K4me3_ko_rep1


title: H3K4me3_ko_input


title: Trib2_CTX_250ng_1

city: Seattle

first: Lucas

middle: T

last: Gray

state: WA

address: 615 Westlake Ave N

department: Molecular Genetics

institute: Allen Institute for Brain Science

data_processing:
Adapter sequences were clipped from 100 base-pair single-end reads in FASTQ format using the ea-utils application fastq-mcf with settings -C 200000 to filter against Nextera adapter sequences.
Trimmed reads were aligned to GRCm38 (mm10) using the RefSeq annotation gff file downloaded on 6/1/2013. Transcriptome alignment files in BAM format were generated with RSEM v1.2.4 and Bowtie v1.1.0 using the program rsem-calculate-expression with settings --keep-intermediate-files --bowtie-chunkmbs 2000 --output-genome-bam --bowtie-e 500 --bowtie-m 100.
Reads that did not map to the RefSeq annotations were aligned to ERCC sequences and tdTomato sequence using Bowtie v1.1.0 with settings -S --chunkmbs 2000.
Genome_build: mm10
Supplementary_files_format_and_content: CSV: Comma-separated tables of data values; Columns are samples and Rows are genes or ERCC/tdTomato. Column names correspond to sample Titles; Row names correspond to RefSeq Gene Symbols, ERCC symbols, or tdTomato.

source_name: Cortex

growth_protocol: Animals were provided food and water ad libitum and were maintained at a regular 12 h day/night cycle at no more than 5 adult animals per cage. Animals were maintained on the C57BL/6J background.

extract_protocol:
Individual adult male mice (P56±3) were anesthetized in an isoflurane chamber, decapitated, and the brain was immediately removed and submerged in fresh ice-cold artificial cerebrospinal fluid (ACSF). The brain was sectioned on a vibratome (Leica VT1000S) on ice, and each slice (300-400 µm) was immediately transferred to an ACSF bath at room temperature. After the brain slicing is complete (not more than 15 minutes), individual slices of interest were transferred to a small Petri dish containing bubbled room temperature ACSF. The regions of interest (all layers of VISp or specific layers of VISp) were microdissected under a fluorescence dissecting microscope, and the slices before and after dissection were imaged to later examine the location of the microdissected tissue and confirm its location within V1. The dissected tissue pieces were transferred to a microcentrifuge tube and treated with 1 mg/ml pronase in carbogen-bubbled ACSF for 70 minutes at room temperature without mixing in a closed tube. After incubation, with the tissue pieces sitting at the bottom of the tube, the pronase solution was pipetted out of the tube and exchanged with cold ACSF containing 1% fetal bovine serum. The tissue pieces were dissociated into single cells by gentle trituration through Pasteur pipettes with polished tips of 600, 300, and 150-µm diameter. Single cells were isolated by FACS into individual wells of 96-well plates or 8-well PCR strips containing 2.275 µl of Dilution Buffer (SMARTer Ultra Low RNA Kit for Illumina Sequencing, Clontech Cat#634936), 0.125 µl RNase inhibitor (SMARTer kit), and 0.1 µl of 1:1,000,000 diluted RNA spike-in RNAs (ERCC RNA Spike-In Mix 1, Life Technologies Cat#4456740). Sorting was performed on a BD FACSAriaII SORP using a 130um nozzle, a sheath pressure of 10psi, and in the single cell sorting mode. To exclude dead cells, DAPI (DAPI*2HCl, Life Technologies Cat#D1306) was added to the single cell suspension to the final concentration of 2 ng/ml. FACS populations were chosen to select cells with low DAPI and high tdTomato (tdT) fluorescence. In some cases, we also selected cells that have low DAPI and low tdT fluorescence, in order to capture tdT-negative cells from a sample. To collect all cells in an unbiased manner, we selected all cells with low DAPI fluorescence, regardless of their tdT fluorescence level. Sorted cells were frozen immediately on dry ice and stored at -80°C.
We used the SMARTer kit from Clontech (SMARTer Ultra Low RNA Kit for Illumina Sequencing, Clontech Cat#634936)  to reverse transcribe single cell RNA, and amplify the cDNA for 19 PCR cycles. To stabilize the RNA after quickly thawing the cells on ice, we immediately added to each sample an additional 0.125 µl of RNase inhibitor mixed with SMART CDS Primer II A. All steps downstream were carried out according to the manufacturer’s instructions. Each amplification experiment included a set of controls: 10 pg cortex RNA (isolated from Rbp4-Cre;Ai14, P57 male) as positive control for amplification, ERCC-only control to demonstrate the absence of RNases throughout the sorting process, and water-only control, to control for specificity of amplification/absence of contamination. cDNA concentration was quantified using Agilent Bioanalyzer High Sensitivity DNA chips. For most samples, 1 ng of amplified cDNA was used as input to make sequencing libraries with Nextera XT DNA kit (Illumina Cat#FC-131-1096). For smaller cells (e.g., glia), which did not consistently produce more than 1ng cDNA, we used 0.5–1 ng cDNA as input.  We stopped the procedure after PCR clean-up and did not perform library normalization or library pooling. Individual libraries were quantified using Agilent Bioanalyzer DNA 7500 chips. In order to assess sample quality and adjust the concentrations of libraries for multiplexing on HiSeq, all libraries were sequenced first on Illumina MiSeq to obtain approximately 100,000 reads per library, and then on Illumina HiSeq 2000 or 2500 to generate 100 bp reads.

tag: mouse line abbreviation

tag: driver 1

tag: driver 2

tag: reporter

tag: brain region

value: CTX

tag: dissection

value: Cortex

tag: input material

tag: tdtomato labelling

tag: passes qc checks

value: Y

tag: primary type

tag: secondary type

tag: allen science vignette cell id

tag: protocol modifications


title: tRFGG_RBF2

tag: cell line

tag: transfection


title: MCF7 ReACp53 treated rep3

tag: treatment

tag: tissue

value: breast

tag: tumor type

value: breast cancer

tag: tumor stage

tag: p53 status


title: late_passage_ko_rep1

data_processing:
Low quality reads were discarded(N bases more than 10%, phred33<5 more than 50% and phred score of first 5bp <20 after trimming)
Reads were mapped to hg19 by Tophat and FPKM were calculated by Cufflinks
Genome_build: hg19
Supplementary_files_format_and_content: text files include FPKM caculated by Cufflinks

growth_protocol: H9 hESCs (WiCell Research) and their SIRT6-deficient counterpartss were maintained on Mitomycin C treated mouse embryonic fibroblasts (MEFs) in hESC medium or on Matrigel (BD Biosciences) coated plates in mTeSR medium (STEMCELL Technology). Human MSCs were maintained in human MSC medium.

extract_protocol:
Total RNA was extracted from the cells using the RNeasy Mini Kit (Invitrogen, #74104) following the manufacturer’s protocol
RNA libraries were prepared for sequencing using standard Illumina protocols

treatment_protocol: We firstly generated isogenic human embryonic stem cell (hESC) lines with SIRT6-deficiency from wild-type(WT) hESCs by knocking out the 1st exon of SIRT6 gene via a TALEN-mediated approach. Then hMSCs were differentiated from hESCs, and maintained in human MSC culture medium by serial passaging.

tag: cell line background

tag: genotype/variation

value: KO; SIRT6-/-

tag: cell type

value: human mesenchymal stem cell (hMSCs)


title: late_passage_ko_rep2


title: late_passage_wt_rep2

value: WT; SIRT6+/+


title: Rbp4_CTX_250ng_2

tag: mouse line abbreviation

tag: driver 1

tag: driver 2

tag: reporter

value: RCL-tdT

tag: brain region

tag: dissection

tag: input material


title: Rbp4_CTX_250ng_1

tag: tdtomato labelling

tag: passes qc checks

tag: primary type

tag: secondary type

tag: allen science vignette cell id

tag: protocol modifications


title: CAV_VISp_Contra_tdTpos_cell_5

source_name: Primary visual cortex

value: RCL-tdT (Ai14)

value: VISp

value: All

value: single cell

value: positive

value: L6a Car12

value: We injected canine adenovirus expressing Cre recombinase (CAV2-Cre) into brains of isofluorane anaesthetized heterozygous Ai14 mice. 165-500 nl of the virus solution was delivered to the targeted brain area using a pressure injection system (NanoJect II, Drummond Scientific Company). Stereotaxic coordinates were obtained from the Paxinos adult mouse brain atlas for visual thalamus (area LP, AP -2.30, ML 2.00, DV 2.60) and visual cortex (VISp, AP -4.16, ML -3.00, DV 0.50). Mice were sacrificed 7-14 days after surgery for single cell isolation. TdTomato-labelled single cells were isolated from VISp on the ipsilateral side for thalamic injections or contralateral side for visual cortex injections.


title: late_passage_wt_rep1


title: CAV_VISp_Contra_tdTpos_cell_3

value: L6a Syt17


title: early_passage_ko_rep2


title: early_passage_ko_rep1


title: UC-05_Caput_cell

tag: patient id

tag: patient status

value: undergoing inguinal radical orchiectomy for a clinical diagnosis of testicular cancer

tag: age

value: adult (22-36yrs range)

tag: tissue origin

value: Epididymis

tag: cell subtype

value: Caput

tag: sample type

value: Human epididymis epithelial (HEE) cell cultures


title: Vip_tdTpositive_cell_70

tag: mouse line abbreviation

value: Vip

tag: driver 1

value: Vip-IRES-Cre

value: upper

value: N


title: early_passage_wt_rep2

tag: cell line background

tag: genotype/variation

value: WT; SIRT6+/+

tag: cell type

value: human mesenchymal stem cell (hMSCs)


title: CAV_VISp_Contra_tdTpos_cell_1

tag: reporter

value: RCL-tdT (Ai14)

tag: brain region

value: VISp

tag: dissection

value: All

tag: input material

tag: tdtomato labelling

value: Y


title: Vip_tdTpositive_cell_44

value: lower

value: single cell

value: positive

tag: passes qc checks

tag: primary type

value: Vip Gpc3

tag: secondary type

value: Vip Cxcl14_Car4

tag: allen science vignette cell id


title: early_passage_wt_rep1


title: Vip_tdTpositive_cell_42


title: AY_rep3_Input

city: Sendai

first: Masayuki

last: Yamamoto

address: 2-1 Seiryo-machi, Aoba-ku

department: Medical Biochemistry

country: Japan

institute: Tohoku University Graduate School of Medicine

data_processing:
Illumina bcl2fastq v2.15.0 software used for basecalling.
ChIP-seq reads were aligned to the mm9 genome assembly using Bowtie2 software.
Peaks were called using MACS version 1.4
Genome_build: mm9
Supplementary_files_format_and_content: bed files were generated using MACS.

source_name: peritoneal macrophage

growth_protocol: 7-8 weeks of mice were received an intraperitoneal injection of 4% thioglycolate broth. Four days later, macrophages collected by intraperitoneal lavage were cultured in RPMI 1640 medium containing 10% fetal bovine serum and 1% penicillin-streptomycin.

extract_protocol:
The cells were fixed with 1% formaldehyde for 10 min at room temperature and subsequently quenched with 0.125-M glycine. ChIP was performed with anti-Nrf2 antibody (Cell Signaling Technology; D1Z9C).The antibody incubation were pereformed overnight at 4℃.
The DNA libraries were prepared from 1.5 or 2 ng of ChIP and input samples quantified with Qubit Fluorometer (Life Technologies), using Mondrian SP+ and Ovation SP Ultralow DR Multiplex System (TaKaRa).braries were prepared for sequencing using standard Illumina protocols.

treatment_protocol: For analysis of Nrf2-induced state, the macrophages were treated with 100-μM diethylmaleate (DEM) for 4 hours

value: peritoneal macrophage

tag: genotype

tag: chip antibody


title: WT_rep3_Input

value: Wild type


title: Vip_tdTpositive_cell_41

value: Vip

value: Vip Chat


title: AY_rep3_ChIP

value: Nrf2 (Cell Signaling Technology; D1Z9C)


title: Vip_tdTpositive_cell_40

value: Vip-IRES-Cre


title: WT_rep3_ChIP


title: WT_rep2_ChIP


title: WT_rep2_Input


title: WT_rep1_Input


title: Vip_tdTpositive_cell_32


title: Vip_tdTpositive_cell_36


title: Vip_tdTpositive_cell_34


title: AY_rep2_Input


title: Vip_tdTpositive_cell_31


title: Vip_tdTpositive_cell_30


title: AY_rep2_ChIP


title: CAV_VISp_Contra_tdTpos_cell_2

value: L6a Car12

tag: protocol modifications

value: We injected canine adenovirus expressing Cre recombinase (CAV2-Cre) into brains of isofluorane anaesthetized heterozygous Ai14 mice. 165-500 nl of the virus solution was delivered to the targeted brain area using a pressure injection system (NanoJect II, Drummond Scientific Company). Stereotaxic coordinates were obtained from the Paxinos adult mouse brain atlas for visual thalamus (area LP, AP -2.30, ML 2.00, DV 2.60) and visual cortex (VISp, AP -4.16, ML -3.00, DV 0.50). Mice were sacrificed 7-14 days after surgery for single cell isolation. TdTomato-labelled single cells were isolated from VISp on the ipsilateral side for thalamic injections or contralateral side for visual cortex injections.


title: Vip_tdTpositive_cell_29

tag: mouse line abbreviation

value: RCL-tdT (Ai14)


title: AY_rep1_ChIP


title: AY_rep1_Input


title: Vip_tdTpositive_cell_27

tag: driver 1

value: VISp


title: Vip_tdTpositive_cell_25


title: Vip_tdTpositive_cell_26


title: Vip_tdTpositive_cell_38


title: Rbp4_CTX_10pg_6

tag: driver 2

value: RCL-tdT

value: CTX

value: Cortex

value: 10 pg


title: Rbp4_CTX_10pg_3

value: Y


title: Rbp4_CTX_10pg_4


title: Vip_tdTpositive_cell_39

value: lower

value: single cell

value: positive

value: Vip Gpc3


title: WT_rep1_ChIP

value: peritoneal macrophage

value: Wild type


title: Rbp4_CTX_10pg_2


title: Rbp4_CTX_10pg_1


title: CAV_LP_Ipsi_tdTpos_cell_43

value: All

value: L6a Plcxd3


title: CAV_VISp_Contra_tdTpos_cell_4

value: L5a Batf3


title: CAV_LP_Ipsi_tdTpos_cell_42

value: L6a Mgp

value: We injected canine adenovirus expressing Cre recombinase (CAV2-Cre) into brains of isofluorane anaesthetized heterozygous Ai14 mice. 165-500 nl of the virus solution was delivered to the targeted brain area using a pressure injection system (NanoJect II, Drummond Scientific Company). Stereotaxic coordinates were obtained from the Paxinos adult mouse brain atlas for visual thalamus (area LP, AP -2.30, ML 2.00, DV 2.60) and visual cortex (VISp, AP -4.16, ML -3.00, DV 0.50). Mice were sacrificed 7-14 days after surgery for single cell isolation. TdTomato-labelled single cells were isolated from VISp on the ipsilateral side for thalamic injections or contralateral side for visual cortex injections.


title: CAV_LP_Ipsi_tdTpos_cell_40

value: RCL-tdT (Ai14)

value: VISp

value: L5 Chrna6


title: Vip_tdTpositive_cell_28

value: Vip

value: Vip-IRES-Cre


title: Rbp4_CTX_10pg_5

value: RCL-tdT

value: CTX

value: Cortex

value: 10 pg

value: Y


title: Vip_tdTpositive_cell_14

value: upper

value: single cell

value: positive

value: Vip Chat


title: Vip_tdTpositive_cell_22

value: Vip Gpc3

value: Vip Cxcl14_Car4


title: Vip_tdTpositive_cell_19

value: Vip Mybpc1


title: Vip_tdTpositive_cell_20

value: RCL-tdT (Ai14)


title: Vip_tdTpositive_cell_21

value: VISp


title: Vip_tdTpositive_cell_18


title: Vip_tdTpositive_cell_15

value: Vip Sncg


title: CAV_LP_Ipsi_tdTpos_cell_39

value: All

value: L6a Plcxd3

value: We injected canine adenovirus expressing Cre recombinase (CAV2-Cre) into brains of isofluorane anaesthetized heterozygous Ai14 mice. 165-500 nl of the virus solution was delivered to the targeted brain area using a pressure injection system (NanoJect II, Drummond Scientific Company). Stereotaxic coordinates were obtained from the Paxinos adult mouse brain atlas for visual thalamus (area LP, AP -2.30, ML 2.00, DV 2.60) and visual cortex (VISp, AP -4.16, ML -3.00, DV 0.50). Mice were sacrificed 7-14 days after surgery for single cell isolation. TdTomato-labelled single cells were isolated from VISp on the ipsilateral side for thalamic injections or contralateral side for visual cortex injections.


title: Vip_tdTpositive_cell_17

value: Vip

value: Vip-IRES-Cre


title: Vip_tdTpositive_cell_13


title: CAV_LP_Ipsi_tdTpos_cell_38

value: L6a Mgp


title: CAV_LP_Ipsi_tdTpos_cell_37

value: Y


title: Vip_tdTpositive_cell_11

value: upper


title: Vip_tdTpositive_cell_12

value: single cell


title: CAV_LP_Ipsi_tdTpos_cell_35

value: positive


title: CAV_LP_Ipsi_tdTpos_cell_36

value: L5b Samd3


title: CAV_LP_Ipsi_tdTpos_cell_34


title: Vip_tdTpositive_cell_10

value: Vip Chat


title: Vip_tdTpositive_cell_7


title: Vip_tdTpositive_cell_8

value: Vip Cxcl14_Car4


title: CAV_LP_Ipsi_tdTpos_cell_33


title: Vip_tdTpositive_cell_9

value: Vip Mybpc1


title: CAV_LP_Ipsi_tdTpos_cell_41

value: RCL-tdT (Ai14)


title: Vip_tdTpositive_cell_6

value: VISp


title: Vip_tdTpositive_cell_5


title: CAV_LP_Ipsi_tdTpos_cell_30


title: CAV_LP_Ipsi_tdTpos_cell_31


title: CAV_LP_Ipsi_tdTpos_cell_28


title: Vip_tdTpositive_cell_2

value: Vip Sncg


title: CAV_LP_Ipsi_tdTpos_cell_27

value: All


title: CAV_LP_Ipsi_tdTpos_cell_29

value: L5b Cdh13


title: Tac2_tdTpositive_cell_7

value: Pvalb Tacr3


title: Vip_tdTpositive_cell_4

value: Vip


title: CAV_LP_Ipsi_tdTpos_cell_25

value: L6a Plcxd3

value: We injected canine adenovirus expressing Cre recombinase (CAV2-Cre) into brains of isofluorane anaesthetized heterozygous Ai14 mice. 165-500 nl of the virus solution was delivered to the targeted brain area using a pressure injection system (NanoJect II, Drummond Scientific Company). Stereotaxic coordinates were obtained from the Paxinos adult mouse brain atlas for visual thalamus (area LP, AP -2.30, ML 2.00, DV 2.60) and visual cortex (VISp, AP -4.16, ML -3.00, DV 0.50). Mice were sacrificed 7-14 days after surgery for single cell isolation. TdTomato-labelled single cells were isolated from VISp on the ipsilateral side for thalamic injections or contralateral side for visual cortex injections.


title: Vip_tdTpositive_cell_23

value: Vip-IRES-Cre

value: lower

value: Y


title: Vip_tdTpositive_cell_3

value: upper

value: single cell

value: positive


title: CAV_LP_Ipsi_tdTpos_cell_26


title: Tac2_tdTpositive_cell_6

value: Pvalb Tpbg


title: CAV_LP_Ipsi_tdTpos_cell_23

value: L6a Mgp


title: Tac2_tdTpositive_cell_5

value: RCL-tdT (Ai14)

value: Pvalb Gpx3


title: CAV_LP_Ipsi_tdTpos_cell_24

value: VISp


title: CAV_LP_Ipsi_tdTpos_cell_32

value: All


title: Tac2_tdTpositive_cell_3

value: L5b Samd3


title: CAV_LP_Ipsi_tdTpos_cell_22


title: Tac2_tdTpositive_cell_2


title: CAV_LP_Ipsi_tdTpos_cell_21


title: CAV_LP_Ipsi_tdTpos_cell_20

value: L5 Chrna6


title: CAV_LP_Ipsi_tdTpos_cell_19


title: Tac2_tdTpositive_cell_1

value: Pvalb Tacr3


title: CAV_LP_Ipsi_tdTpos_cell_18

value: L5b Cdh13


title: Tac2_tdTpositive_cell_8

value: Pvalb Wt1


title: Sst_tdTpositive_cell_106

value: Sst

value: Sst-IRES-Cre


title: CAV_LP_Ipsi_tdTpos_cell_17

value: Y

value: We injected canine adenovirus expressing Cre recombinase (CAV2-Cre) into brains of isofluorane anaesthetized heterozygous Ai14 mice. 165-500 nl of the virus solution was delivered to the targeted brain area using a pressure injection system (NanoJect II, Drummond Scientific Company). Stereotaxic coordinates were obtained from the Paxinos adult mouse brain atlas for visual thalamus (area LP, AP -2.30, ML 2.00, DV 2.60) and visual cortex (VISp, AP -4.16, ML -3.00, DV 0.50). Mice were sacrificed 7-14 days after surgery for single cell isolation. TdTomato-labelled single cells were isolated from VISp on the ipsilateral side for thalamic injections or contralateral side for visual cortex injections.


title: Sst_tdTpositive_cell_75

value: lower

value: single cell

value: Sst Th


title: CAV_LP_Ipsi_tdTpos_cell_16

value: positive

value: L6a Mgp


title: Sst_tdTpositive_cell_73

value: RCL-tdT (Ai14)

value: Sst Myh8


title: Tac2_tdTpositive_cell_4

value: VISp

value: All

value: Pvalb Gpx3


title: Sst_tdTpositive_cell_71


title: Sst_tdTpositive_cell_72


title: CAV_LP_Ipsi_tdTpos_cell_12

value: L2/3 Otof


title: CAV_LP_Ipsi_tdTpos_cell_14

value: L5b Cdh13


title: CAV_LP_Ipsi_tdTpos_cell_11


title: Sst_tdTpositive_cell_74

value: Sst Tacstd2


title: CAV_LP_Ipsi_tdTpos_cell_10


title: CAV_LP_Ipsi_tdTpos_cell_9

value: L6a Plcxd3


title: Sst_tdTpositive_cell_69

value: Sst

value: Sst-IRES-Cre

value: Sst Cbln4


title: Sst_tdTpositive_cell_68

value: lower

value: Y


title: CAV_LP_Ipsi_tdTpos_cell_8

value: single cell

value: We injected canine adenovirus expressing Cre recombinase (CAV2-Cre) into brains of isofluorane anaesthetized heterozygous Ai14 mice. 165-500 nl of the virus solution was delivered to the targeted brain area using a pressure injection system (NanoJect II, Drummond Scientific Company). Stereotaxic coordinates were obtained from the Paxinos adult mouse brain atlas for visual thalamus (area LP, AP -2.30, ML 2.00, DV 2.60) and visual cortex (VISp, AP -4.16, ML -3.00, DV 0.50). Mice were sacrificed 7-14 days after surgery for single cell isolation. TdTomato-labelled single cells were isolated from VISp on the ipsilateral side for thalamic injections or contralateral side for visual cortex injections.


title: CAV_LP_Ipsi_tdTpos_cell_13

value: positive


title: Sst_tdTpositive_cell_64

value: RCL-tdT (Ai14)


title: CAV_LP_Ipsi_tdTpos_cell_6

value: L6a Mgp


title: CAV_LP_Ipsi_tdTpos_cell_7

value: VISp


title: Sst_tdTpositive_cell_62

value: Sst Myh8


title: Sst_tdTpositive_cell_63

value: Sst Th


title: CAV_LP_Ipsi_tdTpos_cell_5

value: All

value: L5b Samd3


title: Sst_tdTpositive_cell_107

value: Sst Cdk6


title: Sst_tdTpositive_cell_67


title: CAV_LP_Ipsi_tdTpos_cell_4

value: L5b Cdh13


title: Sst_tdTpositive_cell_61

value: Sst

value: upper


title: CAV_LP_Ipsi_tdTpos_cell_2


title: Sst_tdTpositive_cell_60

value: Sst-IRES-Cre

value: Sst Cbln4


title: Sst_tdTpositive_cell_59

value: Y


title: CAV_LP_Ipsi_tdTpos_cell_1

value: single cell


title: Sst_tdTpositive_cell_57


title: Ntsr1_tdTpos_100cell_2

value: 100 cells

value: TdTomato-positive cells were isolated by FACS as populations of 10 or 100 cells, and processed for RNA-Seq similarly to single-cell libraries.


title: Sst_tdTpositive_cell_65

value: RCL-tdT (Ai14)

value: lower

value: positive


title: Ntsr1_tdTpos_100cell_1

value: VISp


title: Sst_tdTpositive_cell_56

value: Pvalb Tacr3


title: Ntsr1_tdTpos_10cell_10

value: 10 cells


title: Sst_tdTpositive_cell_52


title: Sst_tdTpositive_cell_53


title: Ntsr1_tdTpos_10cell_8


title: Sst_tdTpositive_cell_51


title: Sst_tdTpositive_cell_50


title: Ntsr1_tdTpos_10cell_7


title: CAV_LP_Ipsi_tdTpos_cell_3

value: All

value: L5b Samd3

value: We injected canine adenovirus expressing Cre recombinase (CAV2-Cre) into brains of isofluorane anaesthetized heterozygous Ai14 mice. 165-500 nl of the virus solution was delivered to the targeted brain area using a pressure injection system (NanoJect II, Drummond Scientific Company). Stereotaxic coordinates were obtained from the Paxinos adult mouse brain atlas for visual thalamus (area LP, AP -2.30, ML 2.00, DV 2.60) and visual cortex (VISp, AP -4.16, ML -3.00, DV 0.50). Mice were sacrificed 7-14 days after surgery for single cell isolation. TdTomato-labelled single cells were isolated from VISp on the ipsilateral side for thalamic injections or contralateral side for visual cortex injections.


title: Ntsr1_tdTpos_10cell_6


title: Ntsr1_tdTpos_10cell_4


title: Sst_tdTpositive_cell_49

value: Sst


title: Ntsr1_tdTpos_10cell_3


title: Sst_tdTpositive_cell_48

value: upper

value: Sst Cdk6


title: Sst_tdTpositive_cell_47

value: Sst-IRES-Cre

value: Sst Cbln4


title: Ntsr1_tdTpos_10cell_2

value: Y


title: Sst_tdTpositive_cell_55

value: single cell

value: Sst Chodl


title: Sst_tdTpositive_cell_46

value: RCL-tdT (Ai14)


title: Sst_tdTpositive_cell_44


title: Sst_tdTpositive_cell_54


title: Sst_tdTpositive_cell_43


title: Vip_tdTpositive_cell_69

value: Vip

value: Vip-IRES-Cre

value: N


title: Sst_tdTpositive_cell_42

value: VISp

value: positive


title: Sst_tdTpositive_cell_41


title: Vip_tdTpositive_cell_66

value: All

value: Vip Cxcl14_Car4


title: Sst_tdTpositive_cell_40

value: Sst Myh8


title: Vip_tdTpositive_cell_64


title: Vip_tdTpositive_cell_65

value: Vip Mybpc1


title: Sst_tdTpositive_cell_37

value: Sst


title: Sst_tdTpositive_cell_39

value: upper


title: CAV_LP_Ipsi_tdTpos_cell_15

value: L5 Chrna6

value: We injected canine adenovirus expressing Cre recombinase (CAV2-Cre) into brains of isofluorane anaesthetized heterozygous Ai14 mice. 165-500 nl of the virus solution was delivered to the targeted brain area using a pressure injection system (NanoJect II, Drummond Scientific Company). Stereotaxic coordinates were obtained from the Paxinos adult mouse brain atlas for visual thalamus (area LP, AP -2.30, ML 2.00, DV 2.60) and visual cortex (VISp, AP -4.16, ML -3.00, DV 0.50). Mice were sacrificed 7-14 days after surgery for single cell isolation. TdTomato-labelled single cells were isolated from VISp on the ipsilateral side for thalamic injections or contralateral side for visual cortex injections.


title: Vip_tdTpositive_cell_63

value: Y


title: Vip_tdTpositive_cell_62

value: single cell


title: Vip_tdTpositive_cell_61

value: Vip Chat


title: Sst_tdTpositive_cell_70

value: Sst-IRES-Cre

value: RCL-tdT (Ai14)

value: lower

value: Pvalb Gpx3


title: Sst_tdTpositive_cell_34

value: VISp

value: Sst Cbln4


title: Vip_tdTpositive_cell_60

value: Vip

value: Vip-IRES-Cre

value: All

value: positive


title: Vip_tdTpositive_cell_68

value: Vip Cxcl14_Car4


title: Sst_tdTpositive_cell_33

value: Sst

value: Sst Chodl


title: Vip_tdTpositive_cell_58


title: Sst_tdTpositive_cell_38


title: Sst_tdTpositive_cell_30


title: Sst_tdTpositive_cell_32

value: Sst Cdk6


title: Vip_tdTpositive_cell_56

value: Y


title: Vip_tdTpositive_cell_54

value: single cell


title: Sst_tdTpositive_cell_29


title: Sst_tdTpositive_cell_28


title: Vip_tdTpositive_cell_50

value: Vip Gpc3


title: Vip_tdTpositive_cell_52


title: Scnn1a-Tg3_tdTnegative_cell_24

value: negative

value: N


title: Vip_tdTpositive_cell_55

value: RCL-tdT (Ai14)

value: Vip Chat


title: Sst_tdTpositive_cell_31

value: Sst-IRES-Cre

value: VISp

value: Sst Tacstd2


title: Scnn1a-Tg3_tdTnegative_cell_20

value: L5 Ucma

value: L5a Batf3


title: Vip_tdTpositive_cell_49

value: Vip

value: Vip-IRES-Cre

value: lower

value: positive


title: Vip_tdTpositive_cell_53

value: All

value: Vip Cxcl14_Car4


title: Vip_tdTpositive_cell_57

value: single cell

value: Y

value: Vip Mybpc1


title: Scnn1a-Tg3_tdTnegative_cell_18

value: negative

value: Oligo Opalin


title: Scnn1a-Tg3_tdTnegative_cell_19

value: RCL-tdT (Ai14)


title: Vip_tdTpositive_cell_47

value: Vip Gpc3


title: Vip_tdTpositive_cell_48

value: VISp


title: Vip_tdTpositive_cell_46


title: Scnn1a-Tg3_tdTnegative_cell_21

value: Micro Ctss


title: Vip_tdTpositive_cell_51


title: Vip_tdTpositive_cell_45


title: Scnn1a-Tg3_tdTnegative_cell_15


title: Ntsr1_tdTpos_10cell_1

value: 10 cells

value: TdTomato-positive cells were isolated by FACS as populations of 10 or 100 cells, and processed for RNA-Seq similarly to single-cell libraries.


title: Scnn1a-Tg3_tdTnegative_cell_11

value: OPC Pdgfra


title: Vip_tdTpositive_cell_43

value: Vip

value: Vip-IRES-Cre


title: Vip_tdTpositive_cell_35

value: lower

value: positive


title: Scnn1a-Tg3_tdTnegative_cell_10


title: Vip_tdTpositive_cell_33


title: Vip_tdTpositive_cell_24


title: Scnn1a-Tg3_tdTnegative_cell_9


title: Vip_tdTpositive_cell_16

value: upper

value: Vip Cxcl14_Car4


title: Scnn1a-Tg3_tdTnegative_cell_14

value: single cell

value: Y


title: Vip_tdTpositive_cell_1


title: Scnn1a-Tg3_tdTnegative_cell_6

value: negative


title: Sst_tdTpositive_cell_105

value: Sst

value: Sst-IRES-Cre

value: All

value: Sst Th

value: Sst Myh8


title: Scnn1a-Tg3_tdTnegative_cell_5

value: RCL-tdT (Ai14)

value: VISp


title: Scnn1a-Tg3_tdTnegative_cell_4

value: Micro Ctss


title: Sst_tdTpositive_cell_104

value: Sst Cbln4


title: Scnn1a-Tg3_tdTnegative_cell_3

value: Oligo Opalin


title: Sst_tdTpositive_cell_103

value: Sst Cdk6


title: Scnn1a-Tg3_tdTnegative_cell_2


title: Scnn1a-Tg3_tdTpositive_cell_107

value: positive

value: N


title: Scnn1a-Tg3_tdTpositive_cell_106


title: Sst_tdTpositive_cell_102


title: Sst_tdTpositive_cell_101

value: Sst Chodl


title: Scnn1a-Tg3_tdTpositive_cell_63

value: lower

value: single cell

value: L5 Hsd11b1

value: L5a Fam5c


title: Sst_tdTpositive_cell_36

value: Sst

value: Sst-IRES-Cre

value: Y


title: Sst_tdTpositive_cell_100

value: All

value: Sst Th


title: Scnn1a-Tg3_tdTpositive_cell_62

value: RCL-tdT (Ai14)

value: VISp

value: L6a Mgp


title: Sst_tdTpositive_cell_99

value: Sst Cbln4


title: Scnn1a-Tg3_tdTpositive_cell_61


title: Sst_tdTpositive_cell_98

value: Sst Myh8


title: Sst_tdTpositive_cell_96

value: positive


title: Scnn1a-Tg3_tdTpositive_cell_59


title: Scnn1a-Tg3_tdTpositive_cell_60

value: L5a Batf3


title: Ntsr1_tdTpos_10cell_9

value: 10 cells

value: TdTomato-positive cells were isolated by FACS as populations of 10 or 100 cells, and processed for RNA-Seq similarly to single-cell libraries.


title: Vip_tdTpositive_cell_59

value: Vip

value: Vip-IRES-Cre

value: single cell

value: Vip Chat


title: Sst_tdTpositive_cell_35

value: Sst

value: Sst-IRES-Cre


title: Sst_tdTpositive_cell_95

value: All

value: Y


title: Sst_tdTpositive_cell_94

value: RCL-tdT (Ai14)

value: Pvalb Gpx3


title: Scnn1a-Tg3_tdTpositive_cell_53

value: VISp

value: L4 Scnn1a


title: Sst_tdTpositive_cell_93

value: Sst Cdk6

value: Sst Cbln4


title: Scnn1a-Tg3_tdTpositive_cell_52

value: positive

value: L4 Sparcl1


title: Sst_tdTpositive_cell_91


title: Scnn1a-Tg3_tdTpositive_cell_50

value: L4 Arf5


title: Scnn1a-Tg3_tdTpositive_cell_49


title: Vip_tdTpositive_cell_67

value: Vip

value: Vip Gpc3


title: Sst_tdTpositive_cell_90

value: single cell

value: Sst Tacstd2


title: Sst_tdTpositive_cell_89

value: Sst

value: Sst Myh8


title: Scnn1a-Tg3_tdTpositive_cell_48


title: Scnn1a-Tg3_tdTpositive_cell_47


title: Sst_tdTpositive_cell_88

value: Sst-IRES-Cre

value: All


title: Scnn1a-Tg3_tdTnegative_cell_17

value: RCL-tdT (Ai14)

value: negative

value: Y

value: OPC Pdgfra


title: Sst_tdTpositive_cell_87

value: VISp


title: Sst_tdTpositive_cell_85

value: Sst Cdk6


title: Scnn1a-Tg3_tdTpositive_cell_45

value: positive

value: L4 Scnn1a


title: Scnn1a-Tg3_tdTpositive_cell_43

value: L4 Arf5


title: Scnn1a-Tg3_tdTpositive_cell_64

value: lower

value: L5a Fam5c


title: Scnn1a-Tg3_tdTpositive_cell_44

value: single cell


title: Sst_tdTpositive_cell_84

value: Sst Cbln4


title: Sst_tdTpositive_cell_86

value: Sst


title: Sst_tdTpositive_cell_92


title: Scnn1a-Tg3_tdTpositive_cell_42


title: Scnn1a-Tg3_tdTpositive_cell_41


title: Sst_tdTpositive_cell_82

value: Sst Tacstd2


title: Scnn1a-Tg3_tdTpositive_cell_40


title: Sst_tdTpositive_cell_83

value: Sst-IRES-Cre

value: Sst Myh8


title: Sst_tdTpositive_cell_81

value: RCL-tdT (Ai14)

value: All


title: Sst_tdTpositive_cell_80

value: Y

value: Sst Chodl


title: Scnn1a-Tg3_tdTpositive_cell_39

value: VISp

value: L5 Hsd11b1


title: Scnn1a-Tg3_tdTpositive_cell_46

value: positive


title: Scnn1a-Tg3_tdTpositive_cell_38

value: L4 Scnn1a


title: Ntsr1_tdTpos_100cell_3

value: 100 cells

value: TdTomato-positive cells were isolated by FACS as populations of 10 or 100 cells, and processed for RNA-Seq similarly to single-cell libraries.


title: Ntsr1_tdTpos_10cell_5

value: 10 cells


title: Sst_tdTpositive_cell_78

value: single cell


title: Sst_tdTpositive_cell_79


title: Scnn1a-Tg3_tdTpositive_cell_36

value: L4 Sparcl1


title: Scnn1a-Tg3_tdTpositive_cell_35


title: Sst_tdTpositive_cell_66

value: Sst

value: lower

value: Pvalb Tacr3

value: Pvalb Gpx3


title: Scnn1a-Tg3_tdTpositive_cell_34

value: RCL-tdT (Ai14)


title: Sst_tdTpositive_cell_77

value: Sst-IRES-Cre

value: All

value: Sst Myh8


title: Scnn1a-Tg3_tdTpositive_cell_32

value: VISp

value: Y


title: Scnn1a-Tg3_tdTpositive_cell_31

value: positive


title: Sst_tdTpositive_cell_45

value: upper


title: Scnn1a-Tg3_tdTpositive_cell_30

value: L4 Arf5


title: Scnn1a-Tg3_tdTpositive_cell_29

value: L4 Scnn1a


title: Scnn1a-Tg3_tdTpositive_cell_51

value: L5 Hsd11b1


title: Sst_tdTpositive_cell_27

value: single cell

value: Sst Cdk6


title: Scnn1a-Tg3_tdTpositive_cell_28


title: Scnn1a-Tg3_tdTnegative_cell_22

value: negative

value: Oligo Opalin


title: Scnn1a-Tg3_tdTpositive_cell_27


title: Scnn1a-Tg3_tdTpositive_cell_37


title: Sst_tdTpositive_cell_25

value: Sst

value: Sst Cbln4


title: Scnn1a-Tg3_tdTnegative_cell_12

value: RCL-tdT (Ai14)

value: Micro Ctss


title: Scnn1a-Tg3_tdTnegative_cell_16


title: Sst_tdTpositive_cell_24

value: Sst-IRES-Cre

value: All


title: Sst_tdTpositive_cell_76

value: VISp


title: Sst_tdTpositive_cell_58

value: Y


title: Sst_tdTpositive_cell_23

value: positive

value: Sst Th


title: Scnn1a-Tg3_tdTpositive_cell_25


title: Sst_tdTpositive_cell_22


title: Scnn1a-Tg3_tdTpositive_cell_24

value: L4 Sparcl1


title: Sst_tdTpositive_cell_21

value: Sst Tacstd2


title: Scnn1a-Tg3_tdTpositive_cell_22

value: L5 Hsd11b1


title: Scnn1a-Tg3_tdTpositive_cell_21

value: single cell

value: L4 Arf5


title: Sst_tdTpositive_cell_20

value: upper

value: L2/3 Otof


title: Sst_tdTpositive_cell_19

value: Sst

value: OPC/Oligo

value: Oligo Opalin


title: Sst_tdTpositive_cell_26

value: RCL-tdT (Ai14)


title: Scnn1a-Tg3_tdTpositive_cell_20

value: L4 Scnn1a


title: Scnn1a-Tg3_tdTpositive_cell_18


title: Sst_tdTpositive_cell_18

value: Sst-IRES-Cre

value: Sst Chodl


title: Sst_tdTpositive_cell_17

value: VISp

value: Y

value: Sst Cbln4


title: Sst_tdTpositive_cell_16

value: positive

value: OPC Pdgfra


title: Scnn1a-Tg3_tdTpositive_cell_16

value: L4 Sparcl1


title: Scnn1a-Tg3_tdTpositive_cell_26

value: single cell


title: Sst_tdTpositive_cell_14


title: Scnn1a-Tg3_tdTpositive_cell_15


title: Sst_tdTpositive_cell_13

value: L2 Ngb


title: Scnn1a-Tg3_tdTpositive_cell_14


title: Scnn1a-Tg3_tdTpositive_cell_13

value: L4 Arf5


title: Sst_tdTpositive_cell_12

value: upper


title: Scnn1a-Tg3_tdTpositive_cell_23


title: Sst_tdTpositive_cell_11

value: Sst


title: Sst_tdTpositive_cell_10


title: Scnn1a-Tg3_tdTpositive_cell_11


title: Scnn1a-Tg3_tdTpositive_cell_10


title: Scnn1a-Tg3_tdTpositive_cell_12


title: Sst_tdTpositive_cell_9


title: Sst_tdTpositive_cell_8


title: Scnn1a-Tg3_tdTpositive_cell_9


title: Sst_tdTpositive_cell_7


title: Scnn1a-Tg3_tdTpositive_cell_7


title: Sst_tdTpositive_cell_6


title: Sst_tdTpositive_cell_5


title: Scnn1a-Tg3_tdTpositive_cell_8


title: Sst_tdTpositive_cell_4


title: Scnn1a-Tg3_tdTpositive_cell_6


title: Scnn1a-Tg3_tdTpositive_cell_5

value: L5 Hsd11b1


title: Sst_tdTpositive_cell_3


title: Scnn1a-Tg3_tdTpositive_cell_17


title: Sst_tdTpositive_cell_15


title: Scnn1a-Tg3_tdTpositive_cell_4


title: Scnn1a-Tg3_tdTpositive_cell_3


title: Sst_tdTpositive_cell_2


title: Sst_tdTpositive_cell_1


title: Scnn1a-Tg3_tdTpositive_cell_2


title: Scnn1a-Tg3_tdTpositive_cell_1

value: L5a Fam5c


title: Slc17a6_tdTpositive_cell_46

value: RCL-tdT (Ai14)

value: All

value: L2/3 Otof


title: Scnn1a-Tg2_tdTnegative_cell_19

value: negative

value: Astro Gja1


title: Slc17a6_tdTpositive_cell_47

value: VISp

value: Y


title: Sst_tdTpositive_cell_97

value: Sst-IRES-Cre

value: positive

value: Sst Cbln4


title: Scnn1a-Tg2_tdTnegative_cell_18

value: single cell


title: Slc17a6_tdTpositive_cell_45

value: L6 Car12

value: L6 Syt17


title: Slc17a6_tdTpositive_cell_43


title: Slc17a6_tdTpositive_cell_44


title: Scnn1a-Tg2_tdTnegative_cell_15

value: OPC Pdgfra


title: Scnn1a-Tg2_tdTnegative_cell_17

value: Oligo Opalin


title: Slc17a6_tdTpositive_cell_42


title: Scnn1a-Tg2_tdTnegative_cell_14


title: Scnn1a-Tg2_tdTnegative_cell_13

value: OPC/Oligo


title: Slc17a6_tdTpositive_cell_40

value: L6a Mgp


title: Slc17a6_tdTpositive_cell_41

value: RCL-tdT (Ai14)


title: Scnn1a-Tg2_tdTnegative_cell_16


title: Slc17a6_tdTpositive_cell_39

value: All

value: L6a Plcxd3


title: Slc17a6_tdTpositive_cell_37

value: L2/3 Otof


title: Slc17a6_tdTpositive_cell_38


title: Scnn1a-Tg2_tdTnegative_cell_11

value: negative


title: Scnn1a-Tg2_tdTnegative_cell_10

value: VISp

value: L2 Ngb


title: Slc17a6_tdTpositive_cell_36

value: Y


title: Scnn1a-Tg2_tdTnegative_cell_12


title: Scnn1a-Tg2_tdTnegative_cell_9


title: Slc17a6_tdTpositive_cell_35

value: positive


title: Scnn1a-Tg2_tdTnegative_cell_7


title: Slc17a6_tdTpositive_cell_34


title: Slc17a6_tdTpositive_cell_33


title: Slc17a6_tdTpositive_cell_32


title: Scnn1a-Tg2_tdTnegative_cell_5

value: Astro Gja1


title: Scnn1a-Tg2_tdTnegative_cell_8

value: single cell


title: Slc17a6_tdTpositive_cell_30


title: Scnn1a-Tg2_tdTnegative_cell_6


title: Scnn1a-Tg2_tdTnegative_cell_2


title: Slc17a6_tdTpositive_cell_31


title: Scnn1a-Tg2_tdTnegative_cell_3


title: Slc17a6_tdTpositive_cell_28


title: Slc17a6_tdTpositive_cell_27


title: Slc17a6_tdTpositive_cell_26

value: L4 Arf5

value: L4 Sparcl1


title: Scnn1a-Tg2_tdTpositive_cell_21

value: N


title: Scnn1a-Tg2_tdTpositive_cell_20


title: Slc17a6_tdTpositive_cell_29


title: Scnn1a-Tg2_tdTpositive_cell_19

value: L5 Hsd11b1


title: Slc17a6_tdTpositive_cell_25


title: Scnn1a-Tg2_tdTpositive_cell_18

value: L4 Scnn1a


title: Slc17a6_tdTpositive_cell_23

value: L5a Batf3


title: Scnn1a-Tg2_tdTpositive_cell_17

value: RCL-tdT (Ai14)


title: Slc17a6_tdTpositive_cell_22

value: All


title: Scnn1a-Tg2_tdTpositive_cell_16


title: Slc17a6_tdTpositive_cell_21


title: Vip_tdTpositive_cell_37

value: Vip

value: Vip-IRES-Cre

value: lower

value: Vip Gpc3


title: Scnn1a-Tg2_tdTpositive_cell_15

value: VISp


title: Slc17a6_tdTpositive_cell_19

value: Y

value: L2/3 Otof


title: Scnn1a-Tg2_tdTnegative_cell_4

value: negative

value: Astro Gja1


title: Scnn1a-Tg2_tdTpositive_cell_14

value: single cell

value: positive

value: L4 Arf5


title: Slc17a6_tdTpositive_cell_18

value: L4 Sparcl1


title: Scnn1a-Tg2_tdTnegative_cell_1

value: OPC Pdgfra


title: Scnn1a-Tg2_tdTpositive_cell_12

value: L5 Hsd11b1


title: Scnn1a-Tg2_tdTpositive_cell_13

value: RCL-tdT (Ai14)

value: L5a Fam5c


title: Scnn1a-Tg2_tdTpositive_cell_11


title: Slc17a6_tdTpositive_cell_16

value: All

value: L6a Mgp


title: Slc17a6_tdTpositive_cell_14

value: L2 Ngb


title: Slc17a6_tdTpositive_cell_17


title: Slc17a6_tdTpositive_cell_24


title: Slc17a6_tdTpositive_cell_13

value: L4 Scnn1a


title: Slc17a6_tdTpositive_cell_11

value: VISp

value: L6a Plcxd3


title: Slc17a6_tdTpositive_cell_15

value: Y

value: L2/3 Otof


title: Scnn1a-Tg2_tdTpositive_cell_10


title: Slc17a6_tdTpositive_cell_12


title: Scnn1a-Tg2_tdTpositive_cell_8


title: Slc17a6_tdTpositive_cell_9

value: L6 Car12


title: Scnn1a-Tg2_tdTpositive_cell_4

value: single cell


title: Scnn1a-Tg2_tdTpositive_cell_5

value: positive


title: Scnn1a-Tg2_tdTpositive_cell_6


title: Scnn1a-Tg2_tdTpositive_cell_3


title: Slc17a6_tdTpositive_cell_20


title: Scnn1a-Tg2_tdTpositive_cell_1


title: Scnn1a-Tg2_tdTpositive_cell_2


title: Slc17a6_tdTpositive_cell_6

value: L6 Syt17


title: Rorb_tdTpositive_cell_55

value: Rorb

value: N


title: Slc17a6_tdTpositive_cell_7


title: Scnn1a-Tg2_tdTpositive_cell_9

value: L5 Hsd11b1


title: Slc17a6_tdTpositive_cell_4

value: RCL-tdT (Ai14)


title: Rorb_tdTpositive_cell_54

value: Astro Gja1


title: Rorb_tdTpositive_cell_53

value: L5a Batf3


title: Rorb_tdTpositive_cell_52

value: L5a Fam5c


title: Scnn1a-Tg2_tdTpositive_cell_7


title: Slc17a6_tdTpositive_cell_2

value: All


title: Rorb_tdTpositive_cell_51


title: Slc17a6_tdTpositive_cell_1

value: L6a Mgp


title: Slc17a6_tdTpositive_cell_10

value: VISp

value: L2 Ngb


title: Rorb_tdTpositive_cell_49

value: Y


title: Slc17a6_tdTpositive_cell_3


title: Rorb_tdTpositive_cell_48


title: Scnn1a-Tg3_tdTnegative_cell_13

value: negative

value: Oligo Opalin


title: Slc17a6_tdTpositive_cell_8

value: single cell

value: L6 Car12


title: Scnn1a-Tg3_tdTnegative_cell_8

value: Micro Ctss


title: Scnn1a-Tg3_tdTnegative_cell_23


title: Rorb_tdTpositive_cell_47

value: Rorb

value: positive


title: Scnn1a-Tg3_tdTnegative_cell_7

value: OPC/Oligo


title: Rorb_tdTpositive_cell_44

value: RCL-tdT (Ai14)


title: Slc17a6_tdTpositive_cell_5

value: L6 Syt17


title: Scnn1a-Tg3_tdTpositive_cell_110

value: N


title: Scnn1a-Tg3_tdTnegative_cell_1


title: Rorb_tdTpositive_cell_43

value: L5a Batf3


title: Scnn1a-Tg3_tdTpositive_cell_108


title: Scnn1a-Tg3_tdTpositive_cell_109

value: All


title: Rorb_tdTpositive_cell_41


title: Rorb_tdTpositive_cell_42


title: Rorb_tdTpositive_cell_40

value: L5 Ucma


title: Scnn1a-Tg3_tdTpositive_cell_104

value: VISp


title: Scnn1a-Tg3_tdTpositive_cell_105


title: Rorb_tdTpositive_cell_39

value: Astro Gja1


title: Rorb_tdTpositive_cell_23

value: Y

value: L5 Hsd11b1


title: Scnn1a-Tg3_tdTpositive_cell_102


title: Rorb_tdTpositive_cell_50

value: L5a Syt17


title: Scnn1a-Tg3_tdTpositive_cell_101

value: single cell


title: Rorb_tdTpositive_cell_46

value: L5a Fam5c


title: Scnn1a-Tg3_tdTpositive_cell_98

value: L4 Scnn1a

value: L4 Arf5


title: Rorb_tdTpositive_cell_20

value: Rorb

value: positive

value: L4 Sparcl1


title: Rorb_tdTpositive_cell_21

value: RCL-tdT (Ai14)


title: Scnn1a-Tg3_tdTpositive_cell_97


title: Rorb_tdTpositive_cell_19


title: Scnn1a-Tg3_tdTpositive_cell_96


title: Rorb_tdTpositive_cell_17


title: Rorb_tdTpositive_cell_16


title: Scnn1a-Tg3_tdTpositive_cell_100

value: N


title: Scnn1a-Tg3_tdTpositive_cell_95


title: Rorb_tdTpositive_cell_22


title: Scnn1a-Tg3_tdTpositive_cell_94


title: Scnn1a-Tg3_tdTpositive_cell_93


title: Rorb_tdTpositive_cell_15


title: Rorb_tdTpositive_cell_13


title: Rorb_tdTpositive_cell_10


title: Scnn1a-Tg3_tdTpositive_cell_103


title: Scnn1a-Tg3_tdTpositive_cell_90


title: Rorb_tdTpositive_cell_9

value: L5a Batf3


title: Scnn1a-Tg3_tdTpositive_cell_99


title: Scnn1a-Tg3_tdTpositive_cell_91

value: All


title: Scnn1a-Tg3_tdTpositive_cell_89


title: Rorb_tdTpositive_cell_8


title: Rorb_tdTpositive_cell_18


title: Rorb_tdTpositive_cell_7


title: Rorb_tdTpositive_cell_5


title: Rorb_tdTpositive_cell_6


title: Scnn1a-Tg3_tdTpositive_cell_87


title: Scnn1a-Tg3_tdTpositive_cell_88


title: Scnn1a-Tg3_tdTpositive_cell_85


title: Rorb_tdTpositive_cell_3


title: Scnn1a-Tg3_tdTpositive_cell_84


title: Rorb_tdTpositive_cell_4


title: Rorb_tdTpositive_cell_2


title: Scnn1a-Tg3_tdTpositive_cell_83


title: Rorb_tdTpositive_cell_1


title: Scnn1a-Tg3_tdTpositive_cell_86


title: Rbp4_tdTnegative_cell_23

value: negative

value: Micro Ctss


title: Scnn1a-Tg3_tdTpositive_cell_92

value: VISp


title: Scnn1a-Tg3_tdTpositive_cell_82

value: Y


title: Scnn1a-Tg3_tdTpositive_cell_81


title: Rbp4_tdTnegative_cell_20

value: OPC Pdgfra


title: Rbp4_tdTnegative_cell_21


title: Rbp4_tdTnegative_cell_19


title: Scnn1a-Tg3_tdTpositive_cell_79


title: Rbp4_tdTnegative_cell_22


title: Scnn1a-Tg3_tdTpositive_cell_78

value: L5 Hsd11b1


title: Scnn1a-Tg3_tdTpositive_cell_75

value: single cell


title: Rbp4_tdTnegative_cell_12

value: Oligo Opalin


title: Rbp4_tdTnegative_cell_11

value: OPC/Oligo


title: Rbp4_tdTnegative_cell_16


title: Scnn1a-Tg3_tdTpositive_cell_76

value: L4 Scnn1a


title: Scnn1a-Tg3_tdTpositive_cell_71

value: L4 Arf5


title: Scnn1a-Tg3_tdTpositive_cell_69

value: positive


title: Rbp4_tdTnegative_cell_8


title: Scnn1a-Tg3_tdTpositive_cell_80


title: Rbp4_tdTnegative_cell_14


title: Scnn1a-Tg3_tdTpositive_cell_70

value: L4 Sparcl1


title: Scnn1a-Tg3_tdTpositive_cell_74

value: RCL-tdT (Ai14)


title: Rbp4_tdTnegative_cell_5


title: Rbp4_tdTnegative_cell_7


title: Rbp4_tdTnegative_cell_6


title: Scnn1a-Tg3_tdTpositive_cell_68


title: Rbp4_tdTnegative_cell_9


title: Rbp4_tdTnegative_cell_15


title: Scnn1a-Tg3_tdTpositive_cell_67


title: Scnn1a-Tg3_tdTpositive_cell_77


title: Scnn1a-Tg3_tdTpositive_cell_65


title: Scnn1a-Tg3_tdTpositive_cell_66


title: Rbp4_tdTnegative_cell_1


title: Rbp4_tdTnegative_cell_2


title: Rbp4_tdTnegative_cell_4


title: Rbp4_tdTpositive_cell_189

value: N


title: Scnn1a-Tg3_tdTpositive_cell_57


title: Scnn1a-Tg3_tdTpositive_cell_72


title: Rbp4_tdTpositive_cell_185


title: Scnn1a-Tg3_tdTpositive_cell_56


title: Scnn1a-Tg3_tdTpositive_cell_58


title: Scnn1a-Tg3_tdTpositive_cell_54


title: Rbp4_tdTpositive_cell_180


title: Rbp4_tdTpositive_cell_177


title: Rbp4_tdTpositive_cell_178


title: Scnn1a-Tg3_tdTpositive_cell_19


title: Scnn1a-Tg3_tdTpositive_cell_55


title: Scnn1a-Tg3_tdTpositive_cell_33


title: Rbp4_tdTnegative_cell_3


title: Rbp4_tdTpositive_cell_172

value: L5 Ucma


title: Rorb_tdTpositive_cell_37

value: Rorb


title: Rbp4_tdTpositive_cell_175


title: Rbp4_tdTpositive_cell_176


title: Rorb_tdTpositive_cell_45

value: L5a Batf3


title: Rorb_tdTpositive_cell_36


title: Rorb_tdTpositive_cell_34


title: Rbp4_tdTpositive_cell_171

value: All


title: Rorb_tdTpositive_cell_35

value: VISp


title: Rbp4_tdTpositive_cell_170

value: Y

value: L6 Car12


title: Rorb_tdTpositive_cell_33


title: Rorb_tdTpositive_cell_32


title: Rbp4_tdTpositive_cell_168


title: Rbp4_tdTpositive_cell_167


title: Rbp4_tdTpositive_cell_166


title: Rorb_tdTpositive_cell_31


title: Rorb_tdTpositive_cell_38


title: Rorb_tdTpositive_cell_28


title: Rorb_tdTpositive_cell_30


title: Rbp4_tdTpositive_cell_161

value: L6a Plcxd3


title: Rbp4_tdTpositive_cell_160

value: single cell


title: Rbp4_tdTpositive_cell_165

value: L5a Fam5c

value: L5b Cdh13


title: Rorb_tdTpositive_cell_29

value: L4 Scnn1a


title: Rbp4_tdTpositive_cell_163

value: L6a Mgp


title: Rbp4_tdTpositive_cell_164

value: positive

value: L5 Hsd11b1


title: Rorb_tdTpositive_cell_27

value: RCL-tdT (Ai14)

value: L4 Sparcl1


title: Rbp4_tdTpositive_cell_162


title: Rbp4_tdTpositive_cell_159


title: Rorb_tdTpositive_cell_26


title: Rbp4_tdTpositive_cell_158


title: Rorb_tdTpositive_cell_11


title: Rbp4_tdTpositive_cell_156


title: Rbp4_tdTpositive_cell_169


title: Rorb_tdTpositive_cell_25

value: L4 Arf5


title: Rbp4_tdTnegative_cell_18

value: negative

value: Oligo Opalin


title: Rorb_tdTpositive_cell_24

value: Rorb


title: Rbp4_tdTpositive_cell_157

value: VISp

value: All


title: Rorb_tdTpositive_cell_12

value: Y


title: Rbp4_tdTnegative_cell_13

value: OPC Pdgfra


title: Rbp4_tdTpositive_cell_155

value: single cell

value: L5 Ucma


title: Rbp4_tdTpositive_cell_153

value: L5a Fam5c


title: Rbp4_tdTnegative_cell_17


title: Rbp4_tdTpositive_cell_190

value: N


title: Rorb_tdTpositive_cell_14


title: Rbp4_tdTnegative_cell_10

value: Micro Ctss


title: Rbp4_tdTpositive_cell_149

value: positive

value: L5b Samd3


title: Rbp4_tdTpositive_cell_148

value: RCL-tdT (Ai14)

value: L5b Cdh13


title: Rbp4_tdTpositive_cell_151


title: Rbp4_tdTpositive_cell_187


title: Rbp4_tdTpositive_cell_186


title: Rbp4_tdTpositive_cell_152


title: Rbp4_tdTpositive_cell_184


title: Rbp4_tdTpositive_cell_146


title: Rbp4_tdTpositive_cell_154

value: L5a Batf3


title: Rbp4_tdTpositive_cell_182


title: Rbp4_tdTpositive_cell_144

value: L5 Hsd11b1

value: L4 Scnn1a


title: Rbp4_tdTpositive_cell_145


title: Rbp4_tdTpositive_cell_181


title: Rbp4_tdTpositive_cell_143


title: Rbp4_tdTpositive_cell_179


title: Rbp4_tdTpositive_cell_174


title: Rbp4_tdTpositive_cell_140


title: Rbp4_tdTpositive_cell_142

value: L4 Sparcl1


title: Rbp4_tdTpositive_cell_150

value: VISp


title: Rbp4_tdTpositive_cell_188


title: Rbp4_tdTpositive_cell_147

value: All

value: L5a Syt17


title: Rbp4_tdTpositive_cell_139

value: Y


title: Rbp4_tdTpositive_cell_183

value: single cell


title: Rbp4_tdTpositive_cell_122


title: Rbp4_tdTpositive_cell_135


title: Rbp4_tdTpositive_cell_119


title: Rbp4_tdTpositive_cell_121


title: Rbp4_tdTpositive_cell_124


title: Rbp4_tdTpositive_cell_117


title: Rbp4_tdTpositive_cell_118


title: Rbp4_tdTpositive_cell_136


title: Rbp4_tdTpositive_cell_123

value: L6a Plcxd3


title: Rbp4_tdTpositive_cell_173


title: Rbp4_tdTpositive_cell_132

value: L5a Fam5c


title: Rbp4_tdTpositive_cell_134


title: Rbp4_tdTpositive_cell_133


title: Rbp4_tdTpositive_cell_131


title: Rbp4_tdTpositive_cell_114


title: Rbp4_tdTpositive_cell_116


title: Rbp4_tdTpositive_cell_115


title: Rbp4_tdTpositive_cell_113

value: L5 Chrna6


title: Rbp4_tdTpositive_cell_141


title: Rbp4_tdTpositive_cell_138


title: Rbp4_tdTpositive_cell_137


title: Rbp4_tdTpositive_cell_128


title: Rbp4_tdTpositive_cell_112


title: Rbp4_tdTpositive_cell_111


title: Rbp4_tdTpositive_cell_129


title: Rbp4_tdTpositive_cell_127


title: Rbp4_tdTpositive_cell_125


title: Rbp4_tdTpositive_cell_126

value: Sst Myh8


title: Rbp4_tdTpositive_cell_92

value: positive


title: Rbp4_tdTpositive_cell_109


title: Rbp4_tdTpositive_cell_110


title: Rbp4_tdTpositive_cell_91

value: L5b Samd3


title: Rbp4_tdTpositive_cell_105

value: RCL-tdT (Ai14)


title: Rbp4_tdTpositive_cell_106

value: L5b Cdh13


title: Rbp4_tdTpositive_cell_107


title: Rbp4_tdTpositive_cell_104

value: L5a Batf3


title: Rbp4_tdTpositive_cell_93


title: Rbp4_tdTpositive_cell_130


title: Rbp4_tdTpositive_cell_89


title: Rbp4_tdTpositive_cell_108


title: Rbp4_tdTpositive_cell_103

value: L5 Ucma


title: Rbp4_tdTpositive_cell_102


title: Rbp4_tdTpositive_cell_88


title: Rbp4_tdTpositive_cell_87


title: Rbp4_tdTpositive_cell_90


title: Rbp4_tdTpositive_cell_94


title: Rbp4_tdTpositive_cell_86


title: Rbp4_tdTpositive_cell_100


title: Rbp4_tdTpositive_cell_101


title: Rbp4_tdTpositive_cell_99


title: Rbp4_tdTpositive_cell_85


title: Rbp4_tdTpositive_cell_120


title: Rbp4_tdTpositive_cell_84


title: Rbp4_tdTpositive_cell_83

value: L4 Scnn1a


title: Rbp4_tdTpositive_cell_98

value: L6a Mgp


title: Rbp4_tdTpositive_cell_97

value: VISp


title: Rbp4_tdTpositive_cell_82


title: Rbp4_tdTpositive_cell_96


title: Rbp4_tdTpositive_cell_81


title: Rbp4_tdTpositive_cell_95


title: Rbp4_tdTpositive_cell_78

value: L5 Hsd11b1


title: Rbp4_tdTpositive_cell_79


title: Rbp4_tdTpositive_cell_45

value: All


title: Rbp4_tdTpositive_cell_44

value: Y


title: Rbp4_tdTpositive_cell_46

value: single cell


title: Rbp4_tdTpositive_cell_76


title: Rbp4_tdTpositive_cell_77


title: Rbp4_tdTpositive_cell_80


title: Rbp4_tdTpositive_cell_75


title: Rbp4_tdTpositive_cell_43


title: Rbp4_tdTpositive_cell_72


title: Rbp4_tdTpositive_cell_41

value: L5a Syt17


title: Rbp4_tdTpositive_cell_42


title: Rbp4_tdTpositive_cell_74


title: Rbp4_tdTpositive_cell_73


title: Rbp4_tdTpositive_cell_71


title: Scnn1a-Tg3_tdTpositive_cell_73


title: Rbp4_tdTpositive_cell_70


title: Rbp4_tdTpositive_cell_40

value: L6 Syt17


title: Rbp4_tdTpositive_cell_39


title: Rbp4_tdTpositive_cell_38

value: L5 Chrna6


title: Rbp4_tdTpositive_cell_69


title: Rbp4_tdTpositive_cell_36


title: Rbp4_tdTpositive_cell_68


title: Rbp4_tdTpositive_cell_37


title: Rbp4_tdTpositive_cell_66


title: Rbp4_tdTpositive_cell_35


title: Rbp4_tdTpositive_cell_65


title: Rbp4_tdTpositive_cell_34


title: Rbp4_tdTpositive_cell_32


title: Rbp4_tdTpositive_cell_63


title: Rbp4_tdTpositive_cell_33


title: Rbp4_tdTpositive_cell_64


title: Rbp4_tdTpositive_cell_62

value: L4 Sparcl1


title: Rbp4_tdTpositive_cell_31

value: positive

value: L6 Car12


title: Rbp4_tdTpositive_cell_60

value: RCL-tdT (Ai14)


title: Rbp4_tdTpositive_cell_30


title: Rbp4_tdTpositive_cell_29


title: Rbp4_tdTpositive_cell_59

value: L5a Fam5c

value: L4 Arf5


title: Rbp4_tdTpositive_cell_58

value: L5a Batf3


title: Rbp4_tdTpositive_cell_57

value: L5b Samd3


title: Rbp4_tdTpositive_cell_26


title: Rbp4_tdTpositive_cell_56


title: Rbp4_tdTpositive_cell_25


title: Rbp4_tdTpositive_cell_55


title: Rbp4_tdTpositive_cell_67


title: Rbp4_tdTpositive_cell_54

value: L5b Cdh13


title: Rbp4_tdTpositive_cell_24

value: VISp


title: Rbp4_tdTpositive_cell_23

value: L5 Ucma


title: Rbp4_tdTpositive_cell_21

value: All


title: Rbp4_tdTpositive_cell_22

value: Y


title: Rbp4_tdTpositive_cell_20

value: single cell


title: Rbp4_tdTpositive_cell_50


title: Rbp4_tdTpositive_cell_61

value: L5 Hsd11b1


title: Rbp4_tdTpositive_cell_28


title: Rbp4_tdTpositive_cell_27


title: Rbp4_tdTpositive_cell_47


title: Rbp4_tdTpositive_cell_48


title: Rbp4_tdTpositive_cell_49


title: Rbp4_tdTpositive_cell_16


title: Rbp4_tdTpositive_cell_17


title: Rbp4_tdTpositive_cell_19


title: Rbp4_tdTpositive_cell_15


title: Rbp4_tdTpositive_cell_6


title: Rbp4_tdTpositive_cell_5


title: Rbp4_tdTpositive_cell_14


title: Rbp4_tdTpositive_cell_7


title: Rbp4_tdTpositive_cell_13


title: Rbp4_tdTpositive_cell_8


title: Rbp4_tdTpositive_cell_10


title: Rbp4_tdTpositive_cell_53


title: Rbp4_tdTpositive_cell_11


title: PvalbF-Gad2_tdTpositive_cell_87

value: RCFL-tdT (Ai65)

value: lower

value: Pvalb Rspo2

value: Pvalb Wt1


title: Rbp4_tdTpositive_cell_52

value: positive


title: Rbp4_tdTpositive_cell_1

value: RCL-tdT (Ai14)


title: PvalbF-Gad2_tdTpositive_cell_86


title: Rbp4_tdTpositive_cell_2


title: Rbp4_tdTpositive_cell_12

value: L5 Chrna6


title: Rbp4_tdTpositive_cell_4


title: PvalbF-Gad2_tdTpositive_cell_85


title: Rbp4_tdTpositive_cell_18

value: L5a Fam5c


title: Rbp4_tdTpositive_cell_51

value: Pvalb Tacr3


title: Rbp4_tdTpositive_cell_3

value: L5a Batf3


title: PvalbF-Gad2_tdTpositive_cell_84


title: PvalbF-Gad2_tdTpositive_cell_83


title: PvalbF-Gad2_tdTpositive_cell_93

value: N


title: PvalbF-Gad2_tdTpositive_cell_94

value: VISp


title: PvalbF-Gad2_tdTpositive_cell_82


title: PvalbF-Gad2_tdTpositive_cell_91


title: PvalbF-Gad2_tdTpositive_cell_89


title: PvalbF-Gad2_tdTpositive_cell_90


title: PvalbF-Gad2_tdTpositive_cell_88


title: PvalbF-Gad2_tdTpositive_cell_79


title: PvalbF-Gad2_tdTpositive_cell_78


title: PvalbF-Gad2_tdTpositive_cell_77


title: PvalbF-Gad2_tdTpositive_cell_44


title: PvalbF-Gad2_tdTpositive_cell_43


title: PvalbF-Gad2_tdTpositive_cell_75


title: PvalbF-Gad2_tdTpositive_cell_74


title: Rbp4_tdTpositive_cell_9


title: PvalbF-Gad2_tdTpositive_cell_76


title: PvalbF-Gad2_tdTpositive_cell_42


title: PvalbF-Gad2_tdTpositive_cell_40


title: PvalbF-Gad2_tdTpositive_cell_72


title: PvalbF-Gad2_tdTpositive_cell_41


title: PvalbF-Gad2_tdTpositive_cell_39


title: PvalbF-Gad2_tdTpositive_cell_71


title: PvalbF-Gad2_tdTpositive_cell_38

value: Pvalb Obox3


title: PvalbF-Gad2_tdTpositive_cell_73


title: PvalbF-Gad2_tdTpositive_cell_92

value: All


title: PvalbF-Gad2_tdTpositive_cell_81

value: Y


title: PvalbF-Gad2_tdTpositive_cell_70

value: single cell


title: PvalbF-Gad2_tdTpositive_cell_37


title: PvalbF-Gad2_tdTpositive_cell_69


title: PvalbF-Gad2_tdTpositive_cell_80


title: PvalbF-Gad2_tdTpositive_cell_68


title: PvalbF-Gad2_tdTpositive_cell_35


title: PvalbF-Gad2_tdTpositive_cell_67

value: upper


title: PvalbF-Gad2_tdTpositive_cell_32

value: RCFL-tdT (Ai65)


title: PvalbF-Gad2_tdTpositive_cell_34


title: PvalbF-Gad2_tdTpositive_cell_65


title: PvalbF-Gad2_tdTpositive_cell_64


title: PvalbF-Gad2_tdTpositive_cell_33


title: PvalbF-Gad2_tdTpositive_cell_30


title: PvalbF-Gad2_tdTpositive_cell_58


title: PvalbF-Gad2_tdTpositive_cell_57


title: PvalbF-Gad2_tdTpositive_cell_63


title: PvalbF-Gad2_tdTpositive_cell_28

value: Pvalb Gpx3


title: PvalbF-Gad2_tdTpositive_cell_31

value: L5b Samd3


title: PvalbF-Gad2_tdTpositive_cell_66

value: Pvalb Wt1


title: PvalbF-Gad2_tdTpositive_cell_27

value: positive


title: PvalbF-Gad2_tdTpositive_cell_23


title: PvalbF-Gad2_tdTpositive_cell_59


title: PvalbF-Gad2_tdTpositive_cell_56


title: PvalbF-Gad2_tdTpositive_cell_62


title: PvalbF-Gad2_tdTpositive_cell_21


title: PvalbF-Gad2_tdTpositive_cell_36


title: PvalbF-Gad2_tdTpositive_cell_24


title: PvalbF-Gad2_tdTpositive_cell_29


title: PvalbF-Gad2_tdTpositive_cell_25


title: PvalbF-Gad2_tdTpositive_cell_60


title: PvalbF-Gad2_tdTpositive_cell_61


title: PvalbF-Gad2_tdTpositive_cell_55


title: PvalbF-Gad2_tdTpositive_cell_53


title: PvalbF-Gad2_tdTpositive_cell_54


title: PvalbF-Gad2_tdTpositive_cell_22


title: PvalbF-Gad2_tdTpositive_cell_26


title: PvalbF-Gad2_tdTpositive_cell_52


title: PvalbF-Gad2_tdTpositive_cell_16


title: PvalbF-Gad2_tdTpositive_cell_50


title: PvalbF-Gad2_tdTpositive_cell_15


title: PvalbF-Gad2_tdTpositive_cell_14


title: PvalbF-Gad2_tdTpositive_cell_51


title: PvalbF-Gad2_tdTpositive_cell_45


title: PvalbF-Gad2_tdTpositive_cell_17


title: PvalbF-Gad2_tdTpositive_cell_49


title: PvalbF-Gad2_tdTpositive_cell_47


title: PvalbF-Gad2_tdTpositive_cell_20

value: Pvalb Rspo2


title: PvalbF-Gad2_tdTpositive_cell_10


title: PvalbF-Gad2_tdTpositive_cell_13


title: PvalbF-Gad2_tdTpositive_cell_12


title: PvalbF-Gad2_tdTpositive_cell_8


title: PvalbF-Gad2_tdTpositive_cell_7


title: PvalbF-Gad2_tdTpositive_cell_48


title: PvalbF-Gad2_tdTpositive_cell_9


title: PvalbF-Gad2_tdTpositive_cell_46


title: PvalbF-Gad2_tdTpositive_cell_11


title: PvalbD-Slc32a1_tdTpositive_cell_40

value: RCRL-tdT (Ai66)


title: PvalbD-Slc32a1_tdTpositive_cell_39


title: PvalbD-Slc32a1_tdTpositive_cell_37


title: PvalbD-Slc32a1_tdTpositive_cell_44


title: PvalbD-Slc32a1_tdTpositive_cell_36


title: PvalbD-Slc32a1_tdTpositive_cell_43


title: PvalbD-Slc32a1_tdTpositive_cell_35


title: PvalbF-Gad2_tdTpositive_cell_6


title: PvalbF-Gad2_tdTpositive_cell_19


title: PvalbF-Gad2_tdTpositive_cell_18


title: PvalbD-Slc32a1_tdTpositive_cell_34


title: PvalbF-Gad2_tdTpositive_cell_4


title: PvalbD-Slc32a1_tdTpositive_cell_33


title: PvalbF-Gad2_tdTpositive_cell_2


title: PvalbF-Gad2_tdTpositive_cell_3


title: PvalbD-Slc32a1_tdTpositive_cell_32


title: PvalbD-Slc32a1_tdTpositive_cell_30


title: PvalbD-Slc32a1_tdTpositive_cell_26


title: PvalbD-Slc32a1_tdTpositive_cell_41


title: PvalbD-Slc32a1_tdTpositive_cell_38


title: PvalbD-Slc32a1_tdTpositive_cell_31

value: Pvalb Cpne5


title: PvalbF-Gad2_tdTpositive_cell_1

value: Pvalb Tacr3


title: PvalbD-Slc32a1_tdTpositive_cell_23


title: PvalbD-Slc32a1_tdTpositive_cell_42


title: PvalbD-Slc32a1_tdTpositive_cell_25


title: PvalbD-Slc32a1_tdTpositive_cell_27


title: PvalbD-Slc32a1_tdTpositive_cell_22

value: Pvalb Tpbg


title: PvalbD-Slc32a1_tdTpositive_cell_24


title: PvalbD-Slc32a1_tdTpositive_cell_20


title: PvalbD-Slc32a1_tdTpositive_cell_19


title: PvalbD-Slc32a1_tdTpositive_cell_21


title: PvalbD-Slc32a1_tdTpositive_cell_17


title: Pvalb_tdTpositive_cell_61

value: Pvalb

value: Pvalb-IRES-Cre

value: RCL-tdT (Ai14)

value: lower


title: Pvalb_tdTpositive_cell_63

value: VISp

value: Y


title: Pvalb_tdTpositive_cell_64

value: single cell


title: PvalbF-Gad2_tdTpositive_cell_5

value: RCFL-tdT (Ai65)

value: All


title: PvalbD-Slc32a1_tdTpositive_cell_18


title: PvalbD-Slc32a1_tdTpositive_cell_16


title: Pvalb_tdTpositive_cell_60

value: Pvalb Gpx3


title: Pvalb_tdTpositive_cell_59


title: PvalbD-Slc32a1_tdTpositive_cell_14


title: PvalbD-Slc32a1_tdTpositive_cell_15

value: Vip Mybpc1


title: PvalbD-Slc32a1_tdTpositive_cell_28

value: positive


title: PvalbD-Slc32a1_tdTpositive_cell_13

value: Pvalb Rspo2


title: Pvalb_tdTpositive_cell_57


title: Pvalb_tdTpositive_cell_56

value: upper


title: PvalbD-Slc32a1_tdTpositive_cell_12

value: RCRL-tdT (Ai66)


title: PvalbD-Slc32a1_tdTpositive_cell_11


title: PvalbD-Slc32a1_tdTpositive_cell_29

value: Pvalb Cpne5


title: PvalbD-Slc32a1_tdTpositive_cell_10


title: PvalbD-Slc32a1_tdTpositive_cell_9


title: Pvalb_tdTpositive_cell_55

value: Pvalb Tacr3


title: Pvalb_tdTpositive_cell_53

value: Pvalb


title: Pvalb_tdTpositive_cell_54

value: Pvalb-IRES-Cre


title: Pvalb_tdTpositive_cell_62

value: RCL-tdT (Ai14)


title: Pvalb_tdTpositive_cell_51

value: Pvalb Wt1


title: PvalbD-Slc32a1_tdTpositive_cell_8

value: VISp

value: Sst Tacstd2


title: PvalbD-Slc32a1_tdTpositive_cell_7

value: single cell

value: Y


title: Pvalb_tdTpositive_cell_52

value: Sst Cbln4


title: PvalbD-Slc32a1_tdTpositive_cell_6

value: All

value: Pvalb Gpx3


title: Pvalb_tdTpositive_cell_50

value: positive

value: Pvalb Tpbg


title: Pvalb_tdTpositive_cell_58

value: lower

value: Pvalb Rspo2


title: PvalbD-Slc32a1_tdTpositive_cell_4

value: RCRL-tdT (Ai66)


title: PvalbD-Slc32a1_tdTpositive_cell_3


title: PvalbD-Slc32a1_tdTpositive_cell_5

value: Pvalb Tacr3


title: Pvalb_tdTpositive_cell_48

value: Pvalb


title: Pvalb_tdTpositive_cell_49

value: Pvalb-IRES-Cre

value: upper


title: Pvalb_tdTpositive_cell_46

value: RCL-tdT (Ai14)


title: PvalbD-Slc32a1_tdTpositive_cell_2

value: VISp


title: Pvalb_tdTpositive_cell_44


title: Pvalb_tdTpositive_cell_45


title: Pvalb_tdTpositive_cell_88


title: Pvalb_tdTpositive_cell_89


title: Pvalb_tdTpositive_cell_87


title: Pvalb_tdTpositive_cell_42


title: Pvalb_tdTpositive_cell_41


title: Pvalb_tdTpositive_cell_40

value: Pvalb Wt1


title: Pvalb_tdTpositive_cell_47

value: single cell


title: Pvalb_tdTpositive_cell_86

value: Y


title: Pvalb_tdTpositive_cell_84


title: Pvalb_tdTpositive_cell_35


title: Pvalb_tdTpositive_cell_37


title: Pvalb_tdTpositive_cell_38


title: Pvalb_tdTpositive_cell_39


title: Pvalb_tdTpositive_cell_81

value: Oligo Opalin


title: Pvalb_tdTpositive_cell_83

value: All


title: Pvalb_tdTpositive_cell_36

value: Pvalb Gpx3


title: Pvalb_tdTpositive_cell_80

value: positive


title: Pvalb_tdTpositive_cell_82

value: Pvalb Cpne5


title: Pvalb_tdTpositive_cell_34

value: lower


title: Pvalb_tdTpositive_cell_33

value: Pvalb Rspo2


title: Pvalb_tdTpositive_cell_43


title: Pvalb_tdTpositive_cell_31


title: Pvalb_tdTpositive_cell_32


title: Pvalb_tdTpositive_cell_76


title: Pvalb_tdTpositive_cell_78


title: PvalbD-Slc32a1_tdTpositive_cell_1

value: RCRL-tdT (Ai66)


title: Pvalb_tdTpositive_cell_75


title: Pvalb_tdTpositive_cell_29

value: Pvalb Tacr3


title: Pvalb_tdTpositive_cell_85

value: Pvalb


title: Pvalb_tdTpositive_cell_74

value: Pvalb-IRES-Cre


title: Pvalb_tdTpositive_cell_28


title: Pvalb_tdTpositive_cell_73


title: Pvalb_tdTpositive_cell_27


title: Pvalb_tdTpositive_cell_72


title: Pvalb_tdTpositive_cell_26


title: Pvalb_tdTpositive_cell_71


title: Pvalb_tdTpositive_cell_23

value: upper

value: Pvalb Tpbg


title: Pvalb_tdTpositive_cell_69

value: RCL-tdT (Ai14)

value: VISp


title: Pvalb_tdTpositive_cell_22

value: single cell

value: Pvalb Wt1


title: Pvalb_tdTpositive_cell_79

value: Y


title: Pvalb_tdTpositive_cell_67

value: All

value: Pvalb Obox3


title: Pvalb_tdTpositive_cell_77

value: positive

value: Pvalb Gpx3


title: Pvalb_tdTpositive_cell_21


title: Pvalb_tdTpositive_cell_20


title: Pvalb_tdTpositive_cell_68


title: Pvalb_tdTpositive_cell_65


title: Pvalb_tdTpositive_cell_66


title: Pvalb_tdTpositive_cell_18


title: Pvalb_tdTpositive_cell_19


title: Pvalb_tdTpositive_cell_17


title: Pvalb_tdTpositive_cell_30

value: lower


title: Pvalb_tdTpositive_cell_16


title: Ntsr1_tdTnegative_cell_47

value: negative

value: L6 Syt17


title: Ntsr1_tdTnegative_cell_48

value: L6 Car12


title: Ntsr1_tdTnegative_cell_56

value: N


title: Pvalb_tdTpositive_cell_14

value: Pvalb

value: Pvalb-IRES-Cre


title: Pvalb_tdTpositive_cell_15

value: upper

value: Pvalb Tpbg

value: Pvalb Tacr3


title: Ntsr1_tdTnegative_cell_43

value: RCL-tdT (Ai14)

value: VISp

value: single cell


title: Pvalb_tdTpositive_cell_25

value: Y

value: Pvalb Rspo2


title: Pvalb_tdTpositive_cell_24

value: positive


title: Pvalb_tdTpositive_cell_70

value: All


title: Pvalb_tdTpositive_cell_13

value: Pvalb Wt1


title: Ntsr1_tdTnegative_cell_40

value: negative


title: Pvalb_tdTpositive_cell_12


title: Pvalb_tdTpositive_cell_10


title: Ntsr1_tdTnegative_cell_36

value: L6 Syt17


title: Ntsr1_tdTnegative_cell_37

value: L6a Plcxd3


title: Ntsr1_tdTnegative_cell_31

value: L6b Trh


title: Ntsr1_tdTnegative_cell_34


title: Ntsr1_tdTnegative_cell_33

value: Astro Gja1


title: Pvalb_tdTpositive_cell_7

value: Pvalb

value: Pvalb-IRES-Cre


title: Pvalb_tdTpositive_cell_9

value: upper


title: Ntsr1_tdTnegative_cell_29

value: Endo Myl9


title: Pvalb_tdTpositive_cell_11

value: RCL-tdT (Ai14)

value: Pvalb Cpne5


title: Ntsr1_tdTnegative_cell_32

value: VISp

value: single cell

value: Oligo Opalin


title: Pvalb_tdTpositive_cell_8

value: positive

value: Y

value: Pvalb Tacr3


title: Ntsr1_tdTnegative_cell_28

value: negative

value: Micro Ctss


title: Pvalb_tdTpositive_cell_5

value: Pvalb Wt1


title: Ntsr1_tdTnegative_cell_27


title: Ntsr1_tdTnegative_cell_26


title: Pvalb_tdTpositive_cell_4


title: Ntsr1_tdTnegative_cell_25


title: Pvalb_tdTpositive_cell_1


title: Pvalb_tdTpositive_cell_2


title: Pvalb_tdTpositive_cell_6


title: Ntsr1_tdTnegative_cell_57

value: N


title: Ntsr1_tdTnegative_cell_55

value: Vip Gpc3


title: Ntsr1_tdTnegative_cell_54

value: Sst Th

value: Sst Cbln4


title: Ntsr1_tdTnegative_cell_30

value: Astro Gja1


title: Ntsr1_tdTpositive_cell_72

value: L6a Plcxd3


title: Ntsr1_tdTpositive_cell_70

value: RCL-tdT (Ai14)


title: Ntsr1_tdTpositive_cell_69


title: Ntsr1_tdTpositive_cell_79


title: Ntsr1_tdTpositive_cell_71


title: Ntsr1_tdTpositive_cell_78


title: Ntsr1_tdTpositive_cell_65


title: Ntsr1_tdTnegative_cell_52

value: L6b Mup5


title: Ntsr1_tdTnegative_cell_53

value: VISp

value: L6 Syt17


title: Ntsr1_tdTnegative_cell_51

value: single cell

value: L6 Car12


title: Ntsr1_tdTpositive_cell_66

value: positive

value: Y


title: Ntsr1_tdTnegative_cell_50

value: negative

value: L6a Mgp


title: Ntsr1_tdTpositive_cell_64


title: Ntsr1_tdTnegative_cell_49


title: Ntsr1_tdTnegative_cell_45


title: Ntsr1_tdTpositive_cell_63


title: Ntsr1_tdTpositive_cell_61


title: Ntsr1_tdTpositive_cell_60


title: Ntsr1_tdTnegative_cell_42

value: OPC/Oligo


title: Ntsr1_tdTpositive_cell_68


title: Ntsr1_tdTnegative_cell_41

value: Oligo Opalin


title: Ntsr1_tdTnegative_cell_39

value: OPC Pdgfra


title: Ntsr1_tdTpositive_cell_59


title: Ntsr1_tdTnegative_cell_46


title: Ntsr1_tdTpositive_cell_62


title: Ntsr1_tdTpositive_cell_57


title: Ntsr1_tdTnegative_cell_38


title: Pvalb_tdTpositive_cell_3

value: Pvalb

value: Pvalb-IRES-Cre

value: upper

value: Pvalb Wt1


title: Ntsr1_tdTpositive_cell_58

value: RCL-tdT (Ai14)

value: L6a Plcxd3


title: Ntsr1_tdTpositive_cell_56

value: VISp


title: Ntsr1_tdTnegative_cell_24


title: Ntsr1_tdTnegative_cell_23


title: Ntsr1_tdTpositive_cell_53


title: Ntsr1_tdTnegative_cell_22


title: Ntsr1_tdTpositive_cell_51


title: Ntsr1_tdTnegative_cell_35


title: Ntsr1_tdTpositive_cell_54


title: Ntsr1_tdTnegative_cell_21

value: Astro Gja1


title: Ntsr1_tdTnegative_cell_19

value: single cell


title: Ntsr1_tdTpositive_cell_55


title: Ntsr1_tdTpositive_cell_50


title: Ntsr1_tdTnegative_cell_20


title: Ntsr1_tdTnegative_cell_18

value: Micro Ctss


title: Ntsr1_tdTnegative_cell_17


title: Ntsr1_tdTnegative_cell_44


title: Ntsr1_tdTpositive_cell_48

value: positive


title: Ntsr1_tdTnegative_cell_16

value: Y


title: Ntsr1_tdTpositive_cell_47


title: Ntsr1_tdTpositive_cell_45


title: Ntsr1_tdTpositive_cell_46


title: Ntsr1_tdTnegative_cell_13

value: negative


title: Ntsr1_tdTnegative_cell_14


title: Ntsr1_tdTpositive_cell_44

value: L6a Mgp


title: Ntsr1_tdTpositive_cell_43


title: Ntsr1_tdTpositive_cell_52


title: Ntsr1_tdTnegative_cell_11


title: Ntsr1_tdTnegative_cell_8

value: L6 Syt17


title: Ntsr1_tdTnegative_cell_9

value: L6 Car12


title: Ntsr1_tdTpositive_cell_42


title: Ntsr1_tdTpositive_cell_40


title: Ntsr1_tdTpositive_cell_39


title: Ntsr1_tdTnegative_cell_7


title: Ntsr1_tdTnegative_cell_10

value: OPC Pdgfra


title: Ntsr1_tdTpositive_cell_49


title: Ntsr1_tdTnegative_cell_6


title: Ntsr1_tdTnegative_cell_5

value: Oligo Opalin


title: Ntsr1_tdTnegative_cell_4


title: Ntsr1_tdTnegative_cell_15


title: Ntsr1_tdTpositive_cell_36


title: Ntsr1_tdTnegative_cell_3


title: Ntsr1_tdTpositive_cell_33


title: Ntsr1_tdTnegative_cell_1


title: Ntsr1_tdTpositive_cell_30


title: Ntsr1_tdTnegative_cell_12


title: Ntsr1_tdTpositive_cell_29


title: Ntsr1_tdTpositive_cell_76


title: Ntsr1_tdTpositive_cell_77


title: Ntsr1_tdTpositive_cell_75


title: Ntsr1_tdTpositive_cell_38


title: Ntsr1_tdTpositive_cell_7


title: Ntsr1_tdTnegative_cell_2

value: OPC/Oligo


title: Ntsr1_tdTpositive_cell_34


title: Ntsr1_tdTpositive_cell_37


title: Ntsr1_tdTpositive_cell_67


title: Ntsr1_tdTpositive_cell_5


title: Ntsr1_tdTpositive_cell_73


title: Ntsr1_tdTpositive_cell_6


title: Ntsr1_tdTpositive_cell_31


title: Ntsr1_tdTpositive_cell_4


title: Ntsr1_tdTpositive_cell_3


title: Ntsr1_tdTpositive_cell_28


title: Ntsr1_tdTpositive_cell_35


title: Ntsr1_tdTpositive_cell_1


title: Ntsr1_tdTpositive_cell_74


title: Nr5a1_tdTpositive_cell_52

value: All

value: N


title: Ntsr1_tdTpositive_cell_27

value: RCL-tdT (Ai14)


title: Ntsr1_tdTpositive_cell_26


title: Ntsr1_tdTpositive_cell_25


title: Ntsr1_tdTpositive_cell_24

value: L6a Plcxd3


title: Ntsr1_tdTpositive_cell_8

value: VISp


title: Nr5a1_tdTpositive_cell_49


title: Ntsr1_tdTpositive_cell_23


title: Nr5a1_tdTpositive_cell_48

value: L4 Sparcl1

value: L4 Scnn1a


title: Nr5a1_tdTpositive_cell_47

value: single cell


title: Nr5a1_tdTpositive_cell_46

value: positive


title: Ntsr1_tdTpositive_cell_22

value: Y


title: Nr5a1_tdTpositive_cell_45


title: Ntsr1_tdTpositive_cell_32


title: Ntsr1_tdTpositive_cell_2


title: Ntsr1_tdTpositive_cell_19


title: Nr5a1_tdTpositive_cell_44

value: L2/3 Otof


title: Ntsr1_tdTpositive_cell_20

value: L6a Mgp


title: Nr5a1_tdTpositive_cell_36


title: Ntsr1_tdTpositive_cell_21


title: Ntsr1_tdTpositive_cell_17


title: Ntsr1_tdTpositive_cell_15


title: Ntsr1_tdTpositive_cell_16


title: Nr5a1_tdTpositive_cell_32

value: L4 Arf5


title: Nr5a1_tdTpositive_cell_31


title: Nr5a1_tdTpositive_cell_34


title: Nr5a1_tdTpositive_cell_30


title: Nr5a1_tdTpositive_cell_33


title: Nr5a1_tdTpositive_cell_51


title: Ntsr1_tdTpositive_cell_14


title: Ntsr1_tdTpositive_cell_13


title: Ntsr1_tdTpositive_cell_12


title: Nr5a1_tdTpositive_cell_28


title: Nr5a1_tdTpositive_cell_29


title: Ntsr1_tdTpositive_cell_11


title: Nr5a1_tdTpositive_cell_27


title: Nr5a1_tdTpositive_cell_26


title: Ntsr1_tdTpositive_cell_9


title: Ntsr1_tdTpositive_cell_18


title: Nr5a1_tdTpositive_cell_25


title: Nr5a1_tdTpositive_cell_50


title: Nr5a1_tdTpositive_cell_24


title: Ntsr1_tdTpositive_cell_10


title: Nr5a1_tdTpositive_cell_22


title: Nr5a1_tdTpositive_cell_21


title: Nr5a1_tdTpositive_cell_43


title: Nr5a1_tdTpositive_cell_41


title: Nr5a1_tdTpositive_cell_23


title: Nr5a1_tdTpositive_cell_42


title: Nr5a1_tdTpositive_cell_19


title: Nr5a1_tdTpositive_cell_10


title: Nr5a1_tdTpositive_cell_39


title: Nr5a1_tdTpositive_cell_37

value: L5a Fam5c

value: L5 Hsd11b1


title: Nr5a1_tdTpositive_cell_40


title: Nr5a1_tdTpositive_cell_38


title: Nr5a1_tdTpositive_cell_9


title: Nr5a1_tdTpositive_cell_20


title: Nr5a1_tdTpositive_cell_35


title: Nr5a1_tdTpositive_cell_17


title: Nr5a1_tdTpositive_cell_5


title: Nr5a1_tdTpositive_cell_16


title: Nr5a1_tdTpositive_cell_8


title: Nr5a1_tdTpositive_cell_4


title: Nr5a1_tdTpositive_cell_3


title: Nr5a1_tdTpositive_cell_2


title: Nr5a1_tdTpositive_cell_15


title: Nr5a1_tdTpositive_cell_14


title: Nr5a1_tdTpositive_cell_13


title: Nos1_tdTpositive_cell_73


title: Nr5a1_tdTpositive_cell_12


title: Nos1_tdTpositive_cell_71

value: L2 Ngb


title: Nr5a1_tdTpositive_cell_7


title: Nr5a1_tdTpositive_cell_6


title: Nos1_tdTpositive_cell_72


title: Nr5a1_tdTpositive_cell_18


title: Nos1_tdTpositive_cell_67

value: Sst Chodl


title: Nos1_tdTpositive_cell_68

value: All


title: Nos1_tdTpositive_cell_69

value: Vip Chat


title: Nos1_tdTpositive_cell_66

value: RCL-tdT (Ai14)

value: Endo Myl9


title: Nos1_tdTpositive_cell_65

value: VISp

value: L5a Batf3


title: Nos1_tdTpositive_cell_2


title: Nos1_tdTpositive_cell_8

value: Ndnf Car4


title: Nos1_tdTpositive_cell_3

value: single cell

value: Vip Cxcl14_Car4


title: Nos1_tdTpositive_cell_5

value: positive

value: Y


title: Nkx2-1_tdTpositive_cell_23

value: lower

value: N


title: Nkx2-1_tdTpositive_cell_22

value: Igtp


title: Nos1_tdTpositive_cell_62


title: Nr5a1_tdTpositive_cell_1

value: L4 Scnn1a


title: Nos1_tdTpositive_cell_4


title: Nos1_tdTpositive_cell_63


title: Nkx2-1_tdTpositive_cell_21


title: Nos1_tdTpositive_cell_61

value: L2 Ngb


title: Nos1_tdTpositive_cell_70

value: Sst Chodl


title: Nr5a1_tdTpositive_cell_11

value: L4 Sparcl1


title: Nos1_tdTpositive_cell_60

value: All

value: Vip Chat


title: Nos1_tdTpositive_cell_59

value: RCL-tdT (Ai14)

value: L5a Syt17


title: Nkx2-1_tdTpositive_cell_20

value: VISp

value: upper

value: Pvalb Cpne5


title: Nkx2-1_tdTpositive_cell_19

value: single cell

value: Sst Cbln4


title: Nkx2-1_tdTpositive_cell_18

value: positive

value: Y

value: Pvalb Wt1

value: Pvalb Tacr3


title: Nos1_tdTpositive_cell_58


title: Nos1_tdTpositive_cell_57


title: Nkx2-1_tdTpositive_cell_17

value: Pvalb Tpbg


title: Nos1_tdTpositive_cell_56


title: Nos1_tdTpositive_cell_64


title: Nos1_tdTpositive_cell_55

value: Ndnf Car4


title: Nkx2-1_tdTpositive_cell_16


title: Nkx2-1_tdTpositive_cell_15


title: Nkx2-1_tdTpositive_cell_14

value: Igtp


title: Nos1_tdTpositive_cell_54

value: Endo Myl9


title: Nkx2-1_tdTpositive_cell_12


title: Nos1_tdTpositive_cell_51

value: All

value: L5a Batf3


title: Nkx2-1_tdTpositive_cell_10

value: RCL-tdT (Ai14)


title: Nos1_tdTpositive_cell_50

value: Sst Chodl


title: Nkx2-1_tdTpositive_cell_11

value: VISp


title: Nkx2-1_tdTpositive_cell_13

value: upper


title: Nos1_tdTpositive_cell_52


title: Nos1_tdTpositive_cell_49

value: L5a Syt17


title: Nkx2-1_tdTpositive_cell_9

value: single cell


title: Nkx2-1_tdTpositive_cell_7

value: Pvalb Gpx3


title: Nos1_tdTpositive_cell_48

value: positive


title: Nos1_tdTpositive_cell_46

value: Y


title: Nkx2-1_tdTpositive_cell_6


title: Nos1_tdTpositive_cell_45


title: Nkx2-1_tdTpositive_cell_5


title: Nkx2-1_tdTpositive_cell_4


title: Nos1_tdTpositive_cell_43

value: L2 Ngb

value: L2/3 Otof


title: Nkx2-1_tdTpositive_cell_3

value: Pvalb Tpbg


title: Nos1_tdTpositive_cell_44


title: Nos1_tdTpositive_cell_47

value: Ndnf Car4


title: Nkx2-1_tdTpositive_cell_2

value: Pvalb Tacr3


title: Nos1_tdTpositive_cell_42


title: Nkx2-1_tdTpositive_cell_1

value: Pvalb Cpne5


title: Nos1_tdTpositive_cell_41

value: All

value: Igtp


title: Nos1_tdTpositive_cell_53

value: RCL-tdT (Ai14)


title: Nos1_tdTpositive_cell_40


title: Htr3a_tdTpositive_cell_95

value: lower

value: L6a Plcxd3


title: Nos1_tdTpositive_cell_39

value: VISp

value: Sst Cbln4