title: polyA mRNA RNA-seq from GM12878 (ENCLB038ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AED/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line GM12878.  They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.  These data were collected as part of the RNA Evaluation Study.
experiment encode accession: ENCSR000AED
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB038ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/2c70a865-061c-4422-b531-d33c93591bd5/@@download/attachment/GM12878_Long_PolyA_dUTP_2x101_ENCLB038ZZZ_Ging.pdf


title: total RNA-seq from GM12878 (ENCLB036ZZZ)

status: Public on Mar 18 2016

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR000AEC/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line GM12878.  They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.  These data were collected as part of the RNA Evaluation Study.
experiment encode accession: ENCSR000AEC
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB036ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Homo sapiens

source_name: Homo sapiens GM12878 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/7c70cb49-0f95-4a8c-b20e-6cc83e684467/@@download/attachment/GM12878_Long_Total_dUTP_2x101_ENCLB036ZZZ_Ging.pdf

tag: line

value: immortalized cell line

tag: description

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

tag: biosample encode accession

tag: age

value: unknown

tag: dev stage

value: adult

tag: Sex

value: female

tag: health state

tag: lab

value: Ali Mortazavi, UCI

tag: link

value: ENCBS090RNA at ENCODE; https://www.encodeproject.org/ENCBS090RNA/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: total RNA-seq from GM12878 (ENCLB043ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEG/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation Gm12878 Long Total RNA-seq from Wold
experiment encode accession: ENCSR000AEG
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB043ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/, /references/ENCSR013YHQ/

extract_protocol:
extraction method: Ambion mirVana
extraction protocol: https://www.encodeproject.org/documents/428a184d-7fa1-4599-9d8d-749c2eba7edd/@@download/attachment/cms_055740.pdf, extraction protocol: https://www.encodeproject.org/documents/f0cc5a7f-96a5-4970-9f46-317cc8e2d6a4/@@download/attachment/cms_055423.pdf

value: ENCBS089RNA at ENCODE; https://www.encodeproject.org/ENCBS089RNA/


title: total RNA-seq from GM12878 (ENCLB039ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEE/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation Gm12878 Long Total from Graveley
experiment encode accession: ENCSR000AEE
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Brenton Graveley, UConn
library encode accession: ENCLB039ZZZ
size range: >200
spikeins used: /references/ENCSR449DXG/

extract_protocol:
extraction method: Trizol (LifeTech cat#: 15596-018)
data sheet: https://www.encodeproject.org/documents/75771109-b79e-43d5-9cc0-2dbf708a71f1/@@download/attachment/NIST-ERCC-Spikes.pdf, spike-in concentrations: https://www.encodeproject.org/documents/122fc48c-aec6-4113-9821-178a435a8646/@@download/attachment/NIST-ERCC-Pool15.tsv


title: total RNA-seq from GM12878 (ENCLB035ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEC/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line GM12878.  They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.  These data were collected as part of the RNA Evaluation Study.
experiment encode accession: ENCSR000AEC
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB035ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/87779d77-b5df-423d-8938-3f3821b71d37/@@download/attachment/GM12878_Long_Total_dUTP_2x101_ENCLB035ZZZ_Ging.pdf


title: total RNA-seq from uterine smooth muscle cell (ENCLB033ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAV/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HUtSMC cell total  (SID38216,SID38217)
experiment encode accession: ENCSR000AAV
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB033ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens uterine smooth muscle primary cell female adult (50 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/dd17f157-3343-4893-9809-a361734aca90/@@download/attachment/SID38216.pdf

value: uterine smooth muscle cell

value: primary cell

value: Uterine Smooth Muscle Cells (HUtSMC) from the myometrium of a 50 year old caucasian female

value: 50 year

tag: passage number

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: Thomas Gingeras, CSHL

value: ENCBS042RNA at ENCODE; https://www.encodeproject.org/ENCBS042RNA/

value: Derived from ENCODE donor ENCDO056AAA; https://www.encodeproject.org/ENCDO056AAA/


title: total RNA-seq from smooth muscle cell of the umbilical artery (ENCLB031ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAU/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HUASMC cell total  (SID38214,SID38215)
experiment encode accession: ENCSR000AAU
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB031ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of the umbilical artery primary cell female newborn

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/520eec6f-8cc3-41a9-8c72-8ad46337bd94/@@download/attachment/SID38214.pdf

value: Umbilical Cord Smooth Muscle Cells (HUASMC) from the umbliical artery of a newborn caucasian female

value: unknown

value: newborn

value: ENCBS040RNA at ENCODE; https://www.encodeproject.org/ENCBS040RNA/

value: Derived from ENCODE donor ENCDO054AAA; https://www.encodeproject.org/ENCDO054AAA/


title: total RNA-seq from smooth muscle cell of the umbilical artery (ENCLB032ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAU/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HUASMC cell total  (SID38214,SID38215)
experiment encode accession: ENCSR000AAU
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB032ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of the umbilical artery primary cell male newborn

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/5dfb39e6-f196-4a45-b832-66f834c368fc/@@download/attachment/SID38215.pdf

value: Umbilical Cord Smooth Muscle Cells (HUASMC) from the umbliical artery of a newborn caucasian male

value: male

value: ENCBS041RNA at ENCODE; https://www.encodeproject.org/ENCBS041RNA/

value: Derived from ENCODE donor ENCDO055AAA; https://www.encodeproject.org/ENCDO055AAA/


title: total RNA-seq from epithelial cell of umbilical artery (ENCLB302ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAT/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HUAEC cell total  (SID38212,SID38213)
experiment encode accession: ENCSR000AAT
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB302ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens epithelial of umbilical artery primary cell male newborn

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/4f2bee46-15d1-4433-8e78-a77c5088e28d/@@download/attachment/SID38212.pdf

value: epithelial cell of umbilical artery

value: Normal Human Umbilical Artery Epithelial Cells (HUAEC)

value: ENCBS038RNA at ENCODE; https://www.encodeproject.org/ENCBS038RNA/

value: Derived from ENCODE donor ENCDO052AAA; https://www.encodeproject.org/ENCDO052AAA/


title: total RNA-seq from smooth muscle cell of trachea (ENCLB301ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAS/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HTSMC cell total (SID38503,SID38211)
experiment encode accession: ENCSR000AAS
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB301ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of trachea primary cell male adult (28 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/aa620eb0-55c8-40cb-989b-78950daf7916/@@download/attachment/SID38211.pdf

value: smooth muscle cell of trachea

value: primary cell

value: Trachea Smooth Muscle Cells (HTSMC) from the paries membranaceus of a 28 year old caucasian male

value: 28 year

value: adult

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS037RNA at ENCODE; https://www.encodeproject.org/ENCBS037RNA/

value: Derived from ENCODE donor ENCDO051AAA; https://www.encodeproject.org/ENCDO051AAA/


title: polyA mRNA RNA-seq from GM12878 (ENCLB041ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEF/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation Gm12878 Long Poly-A+  from Graveley
experiment encode accession: ENCSR000AEF
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Brenton Graveley, UConn
library encode accession: ENCLB041ZZZ
size range: >200
spikeins used: /references/ENCSR449DXG/

value: immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: female

value: Ali Mortazavi, UCI

value: ENCBS089RNA at ENCODE; https://www.encodeproject.org/ENCBS089RNA/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: total RNA-seq from liver (ENCLB174ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEU/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on human liver greater than 200bp rRNA depleted total RNA
experiment encode accession: ENCSR000AEU
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB174ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens liver tissue male adult (32 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/dc7f6b9c-03ff-48c3-a6c0-a7e3e3e8831d/@@download/attachment/LID48881.pdf

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: total RNA-seq from tracheal epithelial cell (ENCLB300ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAR/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HTEpC cell total  (SID38208,SID38209)
experiment encode accession: ENCSR000AAR
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB300ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens tracheal epithelial primary cell male adult (68 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/307a98da-f958-4de4-b276-e78801f3b6a2/@@download/attachment/SID38209.pdf

value: tracheal epithelial cell

value: primary cell

value: Normal Human Tracheal Epithelial Cells (HTEpC)

value: 68 year

value: adult

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS035RNA at ENCODE; https://www.encodeproject.org/ENCBS035RNA/

value: Derived from ENCODE donor ENCDO023AAA; https://www.encodeproject.org/ENCDO023AAA/


title: total RNA-seq from smooth muscle cell of trachea (ENCLB303ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAS/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HTSMC cell total (SID38503,SID38211)
experiment encode accession: ENCSR000AAS
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB303ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of trachea primary cell male adult (56 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ff0fc7b2-7d5a-4c7c-b19e-ab0d58afdae0/@@download/attachment/SID38503.pdf

value: smooth muscle cell of trachea

value: Trachea Smooth Muscle Cells (HTSMC) from the paries membranaceus of a 56 year old caucasian male

value: 56 year

value: ENCBS036RNA at ENCODE; https://www.encodeproject.org/ENCBS036RNA/

value: Derived from ENCODE donor ENCDO050AAA; https://www.encodeproject.org/ENCDO050AAA/


title: total RNA-seq from renal cortical epithelial cell (ENCLB298ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAQ/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HRCEpC cell total  (SID38206,SID38207)
experiment encode accession: ENCSR000AAQ
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB298ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens renal cortical epithelial primary cell male adult (84 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/d69d6afa-741a-4954-a658-d0e16f6084f5/@@download/attachment/SID38207.pdf

value: renal cortical epithelial cell

value: Normal Human Renal Cortical Epithelial Cells (HRCEpC)

value: 84 year

value: male

value: Thomas Gingeras, CSHL

value: ENCBS033RNA at ENCODE; https://www.encodeproject.org/ENCBS033RNA/

value: Derived from ENCODE donor ENCDO049AAA; https://www.encodeproject.org/ENCDO049AAA/


title: total RNA-seq from renal cortical epithelial cell (ENCLB297ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAQ/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HRCEpC cell total  (SID38206,SID38207)
experiment encode accession: ENCSR000AAQ
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB297ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens renal cortical epithelial primary cell female adult (69 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/8bb9a26e-a9b7-4412-95d0-7489beb284b2/@@download/attachment/SID38206.pdf

value: primary cell

value: 69 year

value: female

value: ENCBS032RNA at ENCODE; https://www.encodeproject.org/ENCBS032RNA/

value: Derived from ENCODE donor ENCDO048AAA; https://www.encodeproject.org/ENCDO048AAA/


title: total RNA-seq from lung microvascular endothelial cell (ENCLB295ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAP/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HPMEC cell total  (SID38240,SID38241)
experiment encode accession: ENCSR000AAP
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB295ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens lung microvascular endothelial primary cell male adult (63 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/d7dda485-4cf5-4179-ad32-1401749bcf52/@@download/attachment/SID38240.pdf

value: lung microvascular endothelial cell

value: Normal Human Pulmonary Microvascular Endothelial Cells (HPMEC)

value: 63 year

value: adult

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS030RNA at ENCODE; https://www.encodeproject.org/ENCBS030RNA/

value: Derived from ENCODE donor ENCDO046AAA; https://www.encodeproject.org/ENCDO046AAA/


title: total RNA-seq from tracheal epithelial cell (ENCLB299ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAR/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HTEpC cell total  (SID38208,SID38209)
experiment encode accession: ENCSR000AAR
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB299ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens tracheal epithelial primary cell male adult (21 year)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/9ffc8429-0da9-402b-98ba-45621e522a8e/@@download/attachment/SID38208.pdf

value: tracheal epithelial cell

value: Normal Human Tracheal Epithelial Cells (HTEpC)

value: 21 year

value: ENCBS034RNA at ENCODE; https://www.encodeproject.org/ENCBS034RNA/

value: Derived from ENCODE donor ENCDO017AAA; https://www.encodeproject.org/ENCDO017AAA/


title: total RNA-seq from lung microvascular endothelial cell (ENCLB296ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAP/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HPMEC cell total  (SID38240,SID38241)
experiment encode accession: ENCSR000AAP
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB296ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens lung microvascular endothelial primary cell female adult (55 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/61408916-7c90-4052-bdac-e54365fce77a/@@download/attachment/SID38241.pdf

value: primary cell

value: 55 year

value: Thomas Gingeras, CSHL

value: ENCBS031RNA at ENCODE; https://www.encodeproject.org/ENCBS031RNA/

value: Derived from ENCODE donor ENCDO047AAA; https://www.encodeproject.org/ENCDO047AAA/


title: total RNA-seq from fibroblast of lung (ENCLB028ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAO/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HPF cell total  (SID38238,SID38239)
experiment encode accession: ENCSR000AAO
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB028ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens fibroblast of lung primary cell male adult (23 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/0a460b6e-4244-48e3-a7e0-502c7c4475a0/@@download/attachment/SID38238.pdf

value: fibroblast of lung

value: Normal Human Pulmonary Fibroblasts (HPF)

value: 23 year

value: male

value: ENCBS028RNA at ENCODE; https://www.encodeproject.org/ENCBS028RNA/

value: Derived from ENCODE donor ENCDO044AAA; https://www.encodeproject.org/ENCDO044AAA/


title: total RNA-seq from fibroblast of lung (ENCLB029ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAO/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HPF cell total  (SID38238,SID38239)
experiment encode accession: ENCSR000AAO
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB029ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens fibroblast of lung primary cell female adult (83 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/67935118-d3e4-40c1-9461-e15722d530a0/@@download/attachment/SID38239.pdf

value: 83 year

value: adult

value: female

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS029RNA at ENCODE; https://www.encodeproject.org/ENCBS029RNA/

value: Derived from ENCODE donor ENCDO045AAA; https://www.encodeproject.org/ENCDO045AAA/


title: total RNA-seq from smooth muscle cell of the pulmonary artery (ENCLB027ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAN/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HPASMC cell total (SID38228, SID38229)
experiment encode accession: ENCSR000AAN
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB027ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of the pulmonary artery primary cell male adult (28 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/320dc3d5-87d0-4b67-84bc-2c10423b6489/@@download/attachment/SID38229.pdf

value: primary cell

value: Pulmonary Artery Smooth Muscle Cells (HPASMC) from the main branch of a 28 year old caucasian male

value: 28 year

value: ENCBS027RNA at ENCODE; https://www.encodeproject.org/ENCBS027RNA/

value: Derived from ENCODE donor ENCDO043AAA; https://www.encodeproject.org/ENCDO043AAA/


title: total RNA-seq from uterine smooth muscle cell (ENCLB034ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAV/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HUtSMC cell total  (SID38216,SID38217)
experiment encode accession: ENCSR000AAV
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB034ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens uterine smooth muscle primary cell female adult (48 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/7a7257bd-69d1-4ed1-9c11-4739e204369b/@@download/attachment/SID38217.pdf

value: uterine smooth muscle cell

value: Uterine Smooth Muscle Cells (HUtSMC) from the myometrium of a 48 year old caucasian female

value: 48 year

value: Thomas Gingeras, CSHL

value: ENCBS043RNA at ENCODE; https://www.encodeproject.org/ENCBS043RNA/

value: Derived from ENCODE donor ENCDO057AAA; https://www.encodeproject.org/ENCDO057AAA/


title: total RNA-seq from smooth muscle cell of the pulmonary artery (ENCLB026ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAN/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HPASMC cell total (SID38228, SID38229)
experiment encode accession: ENCSR000AAN
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB026ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of the pulmonary artery primary cell male adult (26 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/fbf89bb4-2534-4411-822f-4b86c7791b2e/@@download/attachment/SID38228.pdf

value: Pulmonary Artery Smooth Muscle Cells (HPASMC) from the main branch of a 26 year old caucasian male

value: 26 year

value: male

value: ENCBS026RNA at ENCODE; https://www.encodeproject.org/ENCBS026RNA/

value: Derived from ENCODE donor ENCDO042AAA; https://www.encodeproject.org/ENCDO042AAA/


title: total RNA-seq from epithelial cell of umbilical artery (ENCLB030ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAT/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HUAEC cell total  (SID38212,SID38213)
experiment encode accession: ENCSR000AAT
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB030ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens epithelial of umbilical artery primary cell female newborn

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/5236012e-0a84-4076-8b18-8bce099676c6/@@download/attachment/SID38213.pdf

value: epithelial cell of umbilical artery

value: Normal Human Umbilical Artery Epithelial Cells (HUAEC)

value: unknown

value: newborn

value: female

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS039RNA at ENCODE; https://www.encodeproject.org/ENCBS039RNA/

value: Derived from ENCODE donor ENCDO053AAA; https://www.encodeproject.org/ENCDO053AAA/


title: total RNA-seq from pulmonary artery endothelial cell (ENCLB025ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAM/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HPAEC cell total  (SID38226,SID38227)
experiment encode accession: ENCSR000AAM
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB025ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens pulmonary artery endothelial primary cell male adult (23 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/360a86a3-28a5-491b-83c0-d0cdd555e9cf/@@download/attachment/SID38227.pdf

value: pulmonary artery endothelial cell

value: primary cell

value: Normal Human Pulmonary Artery Endothelial Cells (HPAEC)

value: 23 year

value: adult

value: ENCBS025RNA at ENCODE; https://www.encodeproject.org/ENCBS025RNA/

value: Derived from ENCODE donor ENCDO041AAA; https://www.encodeproject.org/ENCDO041AAA/


title: total RNA-seq from pulmonary artery endothelial cell (ENCLB024ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAM/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HPAEC cell total  (SID38226,SID38227)
experiment encode accession: ENCSR000AAM
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB024ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens pulmonary artery endothelial primary cell male adult (52 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/d79fbf78-babc-4a89-8dc9-beb09db52028/@@download/attachment/SID38226.pdf

value: 52 year

value: male

value: Thomas Gingeras, CSHL

value: ENCBS024RNA at ENCODE; https://www.encodeproject.org/ENCBS024RNA/

value: Derived from ENCODE donor ENCDO025AAA; https://www.encodeproject.org/ENCDO025AAA/


title: total RNA-seq from dermis lymphatic vessel endothelial cell (ENCLB019ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAJ/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HDLEC cell total  (SID38193,SID38194)
experiment encode accession: ENCSR000AAJ
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB019ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens dermis lymphatic vessel endothelial primary cell male child (6 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/04b6bac3-ed46-4f8f-9653-44bc9da3acc0/@@download/attachment/SID38194.pdf

value: Normal Human Dermal Lymphatic Endothelial Cells (HDLEC)

value: 6 year

value: child

value: ENCBS019RNA at ENCODE; https://www.encodeproject.org/ENCBS019RNA/

value: Derived from ENCODE donor ENCDO036AAA; https://www.encodeproject.org/ENCDO036AAA/


title: total RNA-seq from dermis microvascular lymphatic vessel endothelial cell (ENCLB020ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAK/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HDMEC cell total  (SID38195,SID38196)
experiment encode accession: ENCSR000AAK
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB020ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens dermis microvascular lymphatic vessel endothelial primary cell female adult (64 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/c8c07ad1-ca14-4dc4-9953-571af80cff34/@@download/attachment/SID38195.pdf

value: Normal Human Dermal Lymphatic Microvascular Endothelial (HDMEC)

value: 64 year

value: female

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS020RNA at ENCODE; https://www.encodeproject.org/ENCBS020RNA/

value: Derived from ENCODE donor ENCDO037AAA; https://www.encodeproject.org/ENCDO037AAA/


title: total RNA-seq from dermis microvascular lymphatic vessel endothelial cell (ENCLB021ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAK/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HDMEC cell total  (SID38195,SID38196)
experiment encode accession: ENCSR000AAK
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB021ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens dermis microvascular lymphatic vessel endothelial primary cell female adult (38 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/d3043bf4-8063-4b3d-9d86-d16e0202a554/@@download/attachment/SID38196.pdf

value: primary cell

value: 38 year

value: adult

value: ENCBS021RNA at ENCODE; https://www.encodeproject.org/ENCBS021RNA/

value: Derived from ENCODE donor ENCDO038AAA; https://www.encodeproject.org/ENCDO038AAA/


title: total RNA-seq from nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa (ENCLB022ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAL/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HNEpC cell total  (SID38224,SID38225)
experiment encode accession: ENCSR000AAL
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB022ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens nasal cavity respiratory epithelium epithelial of viscerocranial mucosa primary cell female adult (70 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/b4e1b34b-5af8-4df4-b51d-2bc55f33fff0/@@download/attachment/SID38224.pdf

value: Primary Human Nasal Epithelial Cells (HNEpC) are isolated from normal human nasal mucosa and stain positive for cytokeratin.  The epithelium in the nasal cavity cleans, humidifies, and warms inhaled air. In addition, it produces mucus, which binds particles that are subsequently transported to the pharynx by cilia on the epithelial cells. HNEpC are useful for in vitro studies of these processes.

value: 70 year

value: Thomas Gingeras, CSHL

value: ENCBS022RNA at ENCODE; https://www.encodeproject.org/ENCBS022RNA/

value: Derived from ENCODE donor ENCDO039AAA; https://www.encodeproject.org/ENCDO039AAA/


title: total RNA-seq from nasal cavity respiratory epithelium epithelial cell of viscerocranial mucosa (ENCLB023ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAL/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HNEpC cell total  (SID38224,SID38225)
experiment encode accession: ENCSR000AAL
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB023ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens nasal cavity respiratory epithelium epithelial of viscerocranial mucosa primary cell male adult (46 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/06aaddee-1cce-42a6-88d9-01da66a1618c/@@download/attachment/SID38225.pdf

value: 46 year

value: male

value: ENCBS023RNA at ENCODE; https://www.encodeproject.org/ENCBS023RNA/

value: Derived from ENCODE donor ENCDO040AAA; https://www.encodeproject.org/ENCDO040AAA/


title: total RNA-seq from dermis lymphatic vessel endothelial cell (ENCLB018ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAJ/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HDLEC cell total  (SID38193,SID38194)
experiment encode accession: ENCSR000AAJ
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB018ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens dermis lymphatic vessel endothelial primary cell female adult (45 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/78feae2c-4b91-419a-be62-a6a11ac25658/@@download/attachment/SID38193.pdf

value: Normal Human Dermal Lymphatic Endothelial Cells (HDLEC)

value: 45 year

value: female

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS018RNA at ENCODE; https://www.encodeproject.org/ENCBS018RNA/

value: Derived from ENCODE donor ENCDO035AAA; https://www.encodeproject.org/ENCDO035AAA/


title: total RNA-seq from dermis blood vessel endothelial cell (ENCLB017ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAI/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HDBEC cell total  (SID38204,SID38205)
experiment encode accession: ENCSR000AAI
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB017ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens dermis blood vessel endothelial primary cell female child (16 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/a2ec7fc2-9d9e-4655-8886-67b3dabf0d2f/@@download/attachment/SID38205.pdf

value: dermis blood vessel endothelial cell

value: primary cell

value: Normal Human Dermal Blood Endothelial Cells (HDBEC)

value: 16 year

value: child

value: ENCBS017RNA at ENCODE; https://www.encodeproject.org/ENCBS017RNA/

value: Derived from ENCODE donor ENCDO034AAA; https://www.encodeproject.org/ENCDO034AAA/


title: total RNA-seq from regular cardiac myocyte (ENCLB015ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAH/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HCM cell total  (SID38202,SID38203)
experiment encode accession: ENCSR000AAH
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB015ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens regular cardiac myocyte primary cell male adult (48 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/8686a88c-3449-4866-9271-b5cc1132401a/@@download/attachment/SID38203.pdf

value: regular cardiac myocyte

value: Normal Human Cardiac Myocytes (HCM)

value: 48 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS015RNA at ENCODE; https://www.encodeproject.org/ENCBS015RNA/

value: Derived from ENCODE donor ENCDO032AAA; https://www.encodeproject.org/ENCDO032AAA/

value: PromoCell sample source; http://www.promocell.com/nc/products/human-primary-cells/cardiac-myocytes/


title: total RNA-seq from endothelial cell of coronary artery (ENCLB011ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAF/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HCAEC cell total  (SID38232,SID38233)
experiment encode accession: ENCSR000AAF
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB011ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens endothelial of coronary artery primary cell male adult (77 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/163d3ee0-9aa0-4062-8bad-61a39a40069e/@@download/attachment/SID38233.pdf

value: endothelial cell of coronary artery

value: Normal Human Coronary Artery Endothelial Cells (HCAEC)

value: 77 year

value: male

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS011RNA at ENCODE; https://www.encodeproject.org/ENCBS011RNA/

value: Derived from ENCODE donor ENCDO028AAA; https://www.encodeproject.org/ENCDO028AAA/


title: total RNA-seq from smooth muscle cell of the coronary artery (ENCLB013ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAG/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HCASMC cell total  (SID38234,SID38235)
experiment encode accession: ENCSR000AAG
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB013ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of the coronary artery primary cell male adult (55 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/3561db0e-92f0-495c-a77c-d4ecb6c86ea0/@@download/attachment/SID38235.pdf

value: primary cell

value: Coronary Artery Smooth Muscle Cells (HCASMC) from a 55 year old caucasian male

value: 55 year

value: ENCBS013RNA at ENCODE; https://www.encodeproject.org/ENCBS013RNA/

value: Derived from ENCODE donor ENCDO030AAA; https://www.encodeproject.org/ENCDO030AAA/


title: total RNA-seq from smooth muscle cell of the coronary artery (ENCLB012ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAG/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HCASMC cell total  (SID38234,SID38235)
experiment encode accession: ENCSR000AAG
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB012ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of the coronary artery primary cell female adult (53 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/39ee285b-b89a-46bf-b5cd-cb955e5d76ce/@@download/attachment/SID38234.pdf

value: Coronary Artery Smooth Muscle Cells (HCASMC) from a 53 year old caucasian female

value: 53 year

value: adult

value: female

value: ENCBS012RNA at ENCODE; https://www.encodeproject.org/ENCBS012RNA/

value: Derived from ENCODE donor ENCDO029AAA; https://www.encodeproject.org/ENCDO029AAA/


title: total RNA-seq from bronchial smooth muscle cell (ENCLB008ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAE/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HBSMC cell total  (SID38230,SID38231)
experiment encode accession: ENCSR000AAE
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB008ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens bronchial smooth muscle primary cell male adult (52 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/d1e7af55-6c86-4e1c-8661-0ff5f502350c/@@download/attachment/SID38230.pdf

value: bronchial smooth muscle cell

value: Bronchial Smooth Muscle Cells (HBSMC) from the main bronchus of a 52 year old caucasian male

value: 52 year

value: Thomas Gingeras, CSHL

value: ENCBS008RNA at ENCODE; https://www.encodeproject.org/ENCBS008RNA/

value: Derived from ENCODE donor ENCDO025AAA; https://www.encodeproject.org/ENCDO025AAA/


title: total RNA-seq from dermis blood vessel endothelial cell (ENCLB016ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAI/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HDBEC cell total  (SID38204,SID38205)
experiment encode accession: ENCSR000AAI
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB016ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens dermis blood vessel endothelial primary cell male child (13 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/769460f5-5895-442f-a5a5-75bb9876478c/@@download/attachment/SID38204.pdf

value: dermis blood vessel endothelial cell

value: primary cell

value: Normal Human Dermal Blood Endothelial Cells (HDBEC)

value: 13 year

value: child

value: male

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS016RNA at ENCODE; https://www.encodeproject.org/ENCBS016RNA/

value: Derived from ENCODE donor ENCDO033AAA; https://www.encodeproject.org/ENCDO033AAA/


title: total RNA-seq from endothelial cell of coronary artery (ENCLB010ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAF/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HCAEC cell total  (SID38232,SID38233)
experiment encode accession: ENCSR000AAF
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB010ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens endothelial of coronary artery primary cell female adult (41 year)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6111dd5b-6d59-4ae1-b3a3-968a757a5fe8/@@download/attachment/SID38232.pdf

value: endothelial cell of coronary artery

value: Normal Human Coronary Artery Endothelial Cells (HCAEC)

value: 41 year

value: adult

value: female

value: ENCBS010RNA at ENCODE; https://www.encodeproject.org/ENCBS010RNA/

value: Derived from ENCODE donor ENCDO027AAA; https://www.encodeproject.org/ENCDO027AAA/


title: total RNA-seq from bronchial epithelial cell (ENCLB007ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAD/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HBEpC cell total  (SID38222,SID38223)
experiment encode accession: ENCSR000AAD
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB007ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens bronchial epithelial primary cell female adult (40 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/d7e3fb6c-8c9e-441a-b40b-c411f0eadebe/@@download/attachment/SID38223.pdf

value: bronchial epithelial cell

value: Normal Human Bronchial Epithelial Cells (HBEpC)

value: 40 year

value: Thomas Gingeras, CSHL

value: ENCBS007RNA at ENCODE; https://www.encodeproject.org/ENCBS007RNA/

value: Derived from ENCODE donor ENCDO024AAA; https://www.encodeproject.org/ENCDO024AAA/


title: total RNA-seq from bladder microvascular endothelial cell (ENCLB003ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAB/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HBdMEC cell total  (SID38244,SID38245)
experiment encode accession: ENCSR000AAB
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB003ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens bladder microvascular endothelial primary cell male adult (46 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/37faa82e-5c63-4de4-a60b-8ab575ea8b4d/@@download/attachment/SID38245.pdf

value: bladder microvascular endothelial cell

value: primary cell

value: Normal Human Bladder Microvascular Endothelial (HBdMEC)

value: 46 year

value: male

value: ENCBS003RNA at ENCODE; https://www.encodeproject.org/ENCBS003RNA/

value: Derived from ENCODE donor ENCDO020AAA; https://www.encodeproject.org/ENCDO020AAA/


title: total RNA-seq from aortic smooth muscle cell (ENCLB000ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAA/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HAoSMC cell total  (SID38242,SID38243)
experiment encode accession: ENCSR000AAA
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB000ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens aortic smooth muscle primary cell male adult (21 year)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/7aa32299-cc11-4f07-bdaa-a55de6f51a99/@@download/attachment/SID38242.pdf

value: aortic smooth muscle cell

value: Aortic Smooth Muscle Cells (HAoSMC) from the thoracic region of a 21 year old caucasian male

value: 21 year

value: adult

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS000RNA at ENCODE; https://www.encodeproject.org/ENCBS000RNA/

value: Derived from ENCODE donor ENCDO017AAA; https://www.encodeproject.org/ENCDO017AAA/


title: total RNA-seq from smooth muscle cell of bladder (ENCLB005ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAC/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HBdSMC cell total  (SID38220,SID38221)
experiment encode accession: ENCSR000AAC
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB005ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of bladder primary cell male adult (62 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/a188f02a-f112-40cb-908a-30002e9cc584/@@download/attachment/SID38221.pdf

value: smooth muscle cell of bladder

value: Bladder Smooth Dutersor Muscle Cells (HBdSMC) from a 62 year old caucasian male

value: 62 year

value: Thomas Gingeras, CSHL

value: ENCBS005RNA at ENCODE; https://www.encodeproject.org/ENCBS005RNA/

value: Derived from ENCODE donor ENCDO022AAA; https://www.encodeproject.org/ENCDO022AAA/


title: total RNA-seq from smooth muscle cell of bladder (ENCLB004ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAC/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HBdSMC cell total  (SID38220,SID38221)
experiment encode accession: ENCSR000AAC
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB004ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens smooth muscle of bladder primary cell female adult (53 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/41ed25f6-5550-4c30-ad3e-fc0c830871da/@@download/attachment/SID38220.pdf

value: primary cell

value: Bladder Smooth Dutersor Muscle Cells (HBdSMC) from a 53 year old caucasian female

value: 53 year

value: female

value: ENCBS004RNA at ENCODE; https://www.encodeproject.org/ENCBS004RNA/

value: Derived from ENCODE donor ENCDO021AAA; https://www.encodeproject.org/ENCDO021AAA/


title: small RNA-seq from NCI-H460 (ENCLB139JRP)

description:
https://www.encodeproject.org/experiments/ENCSR968YZV/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from cytoplasmic fractions of immortalized cell line NCI-H460 derived from a large cell lung carcinoma of a 37 year old male.  They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted TAP pretreated Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR968YZV
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-12-17
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB139JRP
size range: <200

source_name: Homo sapiens NCI-H460 immortalized cell line cytosolic fraction

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/d751d28b-ac70-49c1-a930-f74c4a6de27c/@@download/attachment/LID293586.pdf

value: immortalized cell line

value: Epithelial-like large cell lung carcinoma immortalized cells from a 37 year old male.

value: 37 year

value: male

tag: subcellular fraction term name

value: cytosol

value: ENCBS814QPR at ENCODE; https://www.encodeproject.org/ENCBS814QPR/

value: Derived from ENCODE donor ENCDO337AAA; https://www.encodeproject.org/ENCDO337AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0459; http://web.expasy.org/cellosaurus/CVCL_0459

value: ATCC sample source; http://www.atcc.org/products/all/HTB-177.aspx


title: total RNA-seq from bladder microvascular endothelial cell (ENCLB002ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAB/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HBdMEC cell total  (SID38244,SID38245)
experiment encode accession: ENCSR000AAB
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB002ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens bladder microvascular endothelial primary cell male adult (60 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/057268e1-e445-4d85-9d81-e9dbc9258d8c/@@download/attachment/SID38244.pdf

value: bladder microvascular endothelial cell

value: Normal Human Bladder Microvascular Endothelial (HBdMEC)

value: 60 year

value: adult

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: Thomas Gingeras, CSHL

value: ENCBS002RNA at ENCODE; https://www.encodeproject.org/ENCBS002RNA/

value: Derived from ENCODE donor ENCDO019AAA; https://www.encodeproject.org/ENCDO019AAA/


title: small RNA-seq from SK-MEL-5 (ENCLB456XQH)

description:
https://www.encodeproject.org/experiments/ENCSR964EPR/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from nuclear fractions of a malignant melonoma immortalized cell line SK-MEL-5 derived from a metastatic axillary node of a 24 year old female. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted TAP pretreated Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR964EPR
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-12-17
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB456XQH
size range: <200

source_name: Homo sapiens SK-MEL-5 immortalized cell line nuclear fraction

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/d28e7462-714e-4f09-827c-3559c72f7f66/@@download/attachment/LID294020.pdf

value: immortalized cell line

value: An immortalized malignant melanoma cell line derived from a metastatic axillary node of a 24 year old female.

value: 24 year

value: female

value: nucleus

value: ENCBS029HXQ at ENCODE; https://www.encodeproject.org/ENCBS029HXQ/

value: Derived from ENCODE donor ENCDO338AAA; https://www.encodeproject.org/ENCDO338AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0527; http://web.expasy.org/cellosaurus/CVCL_0527

value: ATCC sample source; http://www.atcc.org/products/all/HTB-70.aspx


title: total RNA-seq from aortic smooth muscle cell (ENCLB001ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAA/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HAoSMC cell total  (SID38242,SID38243)
experiment encode accession: ENCSR000AAA
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB001ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens aortic smooth muscle primary cell male adult (54 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/337fd2e0-2401-4853-9450-bcdc3e2d4d1b/@@download/attachment/SID38243.pdf

value: aortic smooth muscle cell

value: primary cell

value: Aortic Smooth Muscle Cells (HAoSMC) from the thoracic region of a 54 year old caucasian male

value: 54 year

value: male

value: ENCBS001RNA at ENCODE; https://www.encodeproject.org/ENCBS001RNA/

value: Derived from ENCODE donor ENCDO018AAA; https://www.encodeproject.org/ENCDO018AAA/


title: small RNA-seq from NCI-H460 (ENCLB389QYK)

description:
https://www.encodeproject.org/experiments/ENCSR968YZV/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from cytoplasmic fractions of immortalized cell line NCI-H460 derived from a large cell lung carcinoma of a 37 year old male.  They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted TAP pretreated Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR968YZV
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-12-17
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB389QYK
size range: <200

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/86e60b7f-312b-4b9b-9dff-f4702b039ab5/@@download/attachment/LID293585.pdf

value: Epithelial-like large cell lung carcinoma immortalized cells from a 37 year old male.

value: 37 year

value: adult

value: Thomas Gingeras, CSHL

value: cytosol

value: ENCBS398KLJ at ENCODE; https://www.encodeproject.org/ENCBS398KLJ/

value: Derived from ENCODE donor ENCDO337AAA; https://www.encodeproject.org/ENCDO337AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0459; http://web.expasy.org/cellosaurus/CVCL_0459

value: ATCC sample source; http://www.atcc.org/products/all/HTB-177.aspx


title: single cell RNA-seq from Purkinje cell (ENCLB222MSP)

description:
https://www.encodeproject.org/experiments/ENCSR927DHK/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq of a single Purkinje cell from a 20 year old human male
experiment encode accession: ENCSR927DHK
assay title: single cell RNA-seq
assembly: GRCh38, hg19
possible controls: ENCSR888LYA
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB222MSP
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cells

source_name: Homo sapiens Purkinje primary cell male adult (20 years)

value: Purkinje cell

value: Single Purkinje cell from a 20 year old male brain, part of a set of 20 cells

value: 20 year

value: normal

value: Barbara Wold, Caltech

value: ENCBS241PFM at ENCODE; https://www.encodeproject.org/ENCBS241PFM/

value: Derived from ENCODE donor ENCDO377OGA; https://www.encodeproject.org/ENCDO377OGA/


title: total RNA-seq from regular cardiac myocyte (ENCLB014ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAH/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HCM cell total  (SID38202,SID38203)
experiment encode accession: ENCSR000AAH
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB014ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens regular cardiac myocyte primary cell female adult (51 year)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/c25e6b2c-7c12-427b-8c9c-3d639f63b1cb/@@download/attachment/SID38202.pdf

value: regular cardiac myocyte

value: primary cell

value: Normal Human Cardiac Myocytes (HCM)

value: 51 year

value: female

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS014RNA at ENCODE; https://www.encodeproject.org/ENCBS014RNA/

value: Derived from ENCODE donor ENCDO031AAA; https://www.encodeproject.org/ENCDO031AAA/

value: PromoCell sample source; http://www.promocell.com/nc/products/human-primary-cells/cardiac-myocytes/


title: single cell RNA-seq from Purkinje cell (ENCLB403JBC)

description:
https://www.encodeproject.org/experiments/ENCSR921DSM/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq of a single Purkinje cell from a 20 year old human male
experiment encode accession: ENCSR921DSM
assay title: single cell RNA-seq
assembly: GRCh38, hg19
possible controls: ENCSR888LYA
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB403JBC
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cells

value: adult

value: male

value: ENCBS228OGR at ENCODE; https://www.encodeproject.org/ENCBS228OGR/


title: small RNA-seq from Karpas-422 (ENCLB287YOK)

description:
https://www.encodeproject.org/experiments/ENCSR905KHW/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
experiment encode accession: ENCSR905KHW
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-11-20
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB287YOK
size range: <200

source_name: Homo sapiens Karpas-422 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/9a7cb2e2-04ec-4dcb-b8ed-98b264cf04f7/@@download/attachment/288455.pdf

value: immortalized cell line

value: Karpas422- Human B cell non-Hodgkin lymphoma

value: 73 year

value: human B cell non-Hodgkin's lymphoma

value: Bradley Bernstein, Broad

value: ENCBS870AAA at ENCODE; https://www.encodeproject.org/ENCBS870AAA/

value: Derived from ENCODE donor ENCDO354AAA; https://www.encodeproject.org/ENCDO354AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1325; http://web.expasy.org/cellosaurus/CVCL_1325


title: single cell RNA-seq from Purkinje cell (ENCLB876ZIU)

description:
https://www.encodeproject.org/experiments/ENCSR905FLM/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq of a single Purkinje cell from a 20 year old human male
experiment encode accession: ENCSR905FLM
assay title: single cell RNA-seq
assembly: GRCh38, hg19
possible controls: ENCSR888LYA
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB876ZIU
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cells

value: Purkinje cell

value: primary cell

value: Single Purkinje cell from a 20 year old male brain, part of a set of 20 cells

value: 20 year

value: normal

value: Barbara Wold, Caltech

value: ENCBS767IZA at ENCODE; https://www.encodeproject.org/ENCBS767IZA/

value: Derived from ENCODE donor ENCDO377OGA; https://www.encodeproject.org/ENCDO377OGA/


title: small RNA-seq from Karpas-422 (ENCLB721ZHT)

description:
https://www.encodeproject.org/experiments/ENCSR905KHW/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line, Karpas-422. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
experiment encode accession: ENCSR905KHW
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-11-20
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB721ZHT
size range: <200

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/836c2a41-5eca-41ac-949e-0280cdb074c3/@@download/attachment/288454.pdf

value: adult

value: female

value: ENCBS869AAA at ENCODE; https://www.encodeproject.org/ENCBS869AAA/


title: total RNA-seq from Purkinje cell (ENCLB901PGF)

description:
https://www.encodeproject.org/experiments/ENCSR900JSG/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on 30 cell pools of excised Purkinje cells from a 6 year old human male
experiment encode accession: ENCSR900JSG
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB901PGF
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 30
nucleic acid starting quantity units: cells

source_name: Homo sapiens Purkinje primary cell male child (6 years)

value: 30 Purkinje cells from a 6 year old male brain

value: 6 year

value: child

value: male

value: ENCBS991XFG at ENCODE; https://www.encodeproject.org/ENCBS991XFG/

value: Derived from ENCODE donor ENCDO199IHW; https://www.encodeproject.org/ENCDO199IHW/


title: total RNA-seq from bronchial epithelial cell (ENCLB006ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAD/
***************
biological replicate number: 1
technical replicate number: 1
description: CSHL Long RNA Seq HBEpC cell total  (SID38222,SID38223)
experiment encode accession: ENCSR000AAD
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB006ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens bronchial epithelial primary cell male adult (68 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/9e6cbbeb-b427-4d57-8264-fcdb28dab79d/@@download/attachment/SID38222.pdf

value: bronchial epithelial cell

value: Normal Human Bronchial Epithelial Cells (HBEpC)

value: 68 year

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: Thomas Gingeras, CSHL

value: ENCBS006RNA at ENCODE; https://www.encodeproject.org/ENCBS006RNA/

value: Derived from ENCODE donor ENCDO023AAA; https://www.encodeproject.org/ENCDO023AAA/


title: single cell RNA-seq from Purkinje cell (ENCLB147KNI)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 14
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB147KNI
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent

tag: antibody

value: Control

value: Purkinje cell

value: primary cell

value: 20 homogenized Purkinje cells from a 20 year old male brain prepared for a pool-split experiment

value: 20 year

value: normal

value: Barbara Wold, Caltech

value: ENCBS135VDR at ENCODE; https://www.encodeproject.org/ENCBS135VDR/

value: Derived from ENCODE donor ENCDO377OGA; https://www.encodeproject.org/ENCDO377OGA/


title: total RNA-seq from bronchial smooth muscle cell (ENCLB009ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AAE/
***************
biological replicate number: 2
technical replicate number: 1
description: CSHL Long RNA Seq HBSMC cell total  (SID38230,SID38231)
experiment encode accession: ENCSR000AAE
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB009ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

source_name: Homo sapiens bronchial smooth muscle primary cell male adult (59 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/62d15f7e-602e-46c9-ade6-bb50561e48a1/@@download/attachment/SID38231.pdf

value: bronchial smooth muscle cell

value: Bronchial Smooth Muscle Cells (HBSMC) from the main bronchus of a 59 year old caucasian male

value: 59 year

value: adult

value: male

value: ENCBS009RNA at ENCODE; https://www.encodeproject.org/ENCBS009RNA/

value: Derived from ENCODE donor ENCDO026AAA; https://www.encodeproject.org/ENCDO026AAA/


title: single cell RNA-seq from Purkinje cell (ENCLB632CVX)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 18
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB632CVX
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: single cell RNA-seq from Purkinje cell (ENCLB078UJF)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 9
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB078UJF
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: single cell RNA-seq from Purkinje cell (ENCLB432EQY)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 2
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB432EQY
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: small RNA-seq from SK-MEL-5 (ENCLB928ORY)

description:
https://www.encodeproject.org/experiments/ENCSR964EPR/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from nuclear fractions of a malignant melonoma immortalized cell line SK-MEL-5 derived from a metastatic axillary node of a 24 year old female. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted TAP pretreated Total RNA < 200 nucleotides in size.
experiment encode accession: ENCSR964EPR
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-12-17
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB928ORY
size range: <200

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/88d751a1-47df-4282-a328-7a7c56c27f79/@@download/attachment/LID294019.pdf

value: immortalized cell line

value: An immortalized malignant melanoma cell line derived from a metastatic axillary node of a 24 year old female.

value: 24 year

value: female

value: Thomas Gingeras, CSHL

value: nucleus

value: ENCBS524EJL at ENCODE; https://www.encodeproject.org/ENCBS524EJL/

value: Derived from ENCODE donor ENCDO338AAA; https://www.encodeproject.org/ENCDO338AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0527; http://web.expasy.org/cellosaurus/CVCL_0527

value: ATCC sample source; http://www.atcc.org/products/all/HTB-70.aspx


title: single cell RNA-seq from Purkinje cell (ENCLB452IVF)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 7
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB452IVF
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent

value: Control

value: Purkinje cell

value: primary cell

value: 20 homogenized Purkinje cells from a 20 year old male brain prepared for a pool-split experiment

value: 20 year

value: normal

value: Barbara Wold, Caltech

value: ENCBS135VDR at ENCODE; https://www.encodeproject.org/ENCBS135VDR/

value: Derived from ENCODE donor ENCDO377OGA; https://www.encodeproject.org/ENCDO377OGA/


title: single cell RNA-seq from Purkinje cell (ENCLB857XKO)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 16
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB857XKO
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent

value: adult

value: male


title: single cell RNA-seq from Purkinje cell (ENCLB611KGC)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 11
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB611KGC
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: single cell RNA-seq from Purkinje cell (ENCLB229ENW)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 19
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB229ENW
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: single cell RNA-seq from Purkinje cell (ENCLB614VPZ)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 10
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB614VPZ
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: single cell RNA-seq from Purkinje cell (ENCLB904FTO)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 15
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB904FTO
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: single cell RNA-seq from Purkinje cell (ENCLB340FFP)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 5
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB340FFP
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: single cell RNA-seq from Purkinje cell (ENCLB678KFT)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB678KFT
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: single cell RNA-seq from Purkinje cell (ENCLB562SNL)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 13
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB562SNL
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: single cell RNA-seq from Purkinje cell (ENCLB151CUN)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 4
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB151CUN
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: total RNA-seq from hair follicle dermal papilla cell (ENCLB555ASC)

description:
https://www.encodeproject.org/experiments/ENCSR000CUB/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from hair follicle dermal papilla primary whole cells, HFDPC  isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUB
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ASC
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens hair follicle dermal papilla primary cell female adult (70 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/93d71461-68df-41ee-9922-865a9316b120/@@download/attachment/LID47094.pdf

value: hair follicle dermal papilla cell

value: Follicle Dermal Papilla Cells (HFDPC) from the lateral scalp region of a 70 year old caucasian female with blond hair

value: 70 year

value: female

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: Thomas Gingeras, CSHL

value: ENCBS455ENC at ENCODE; https://www.encodeproject.org/ENCBS455ENC/

value: Derived from ENCODE donor ENCDO130AAA; https://www.encodeproject.org/ENCDO130AAA/

value: ENCODE dbxrefs HFDPC; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HFDPC

value: ENCODE dbxrefs HFDPC_0102703.3; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HFDPC_0102703.3


title: total RNA-seq from Purkinje cell (ENCLB426EUN)

description:
https://www.encodeproject.org/experiments/ENCSR900JSG/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on 30 cell pools of excised Purkinje cells from a 6 year old human male
experiment encode accession: ENCSR900JSG
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB426EUN
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 30
nucleic acid starting quantity units: cells

value: Purkinje cell

value: primary cell

value: 30 Purkinje cells from a 6 year old male brain

value: 6 year

value: child

value: ENCBS051VQG at ENCODE; https://www.encodeproject.org/ENCBS051VQG/

value: Derived from ENCODE donor ENCDO199IHW; https://www.encodeproject.org/ENCDO199IHW/


title: single cell RNA-seq from Purkinje cell (ENCLB205HHN)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 6
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB205HHN
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent

value: Control

value: 20 homogenized Purkinje cells from a 20 year old male brain prepared for a pool-split experiment

value: 20 year

value: adult

value: male

value: normal

value: Barbara Wold, Caltech

value: ENCBS135VDR at ENCODE; https://www.encodeproject.org/ENCBS135VDR/

value: Derived from ENCODE donor ENCDO377OGA; https://www.encodeproject.org/ENCDO377OGA/


title: single cell RNA-seq from Purkinje cell (ENCLB546SWD)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 3
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB546SWD
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent


title: small RNA-seq from HT1080 (ENCLB948SQG)

description:
https://www.encodeproject.org/experiments/ENCSR855CYO/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from nuclear fractions of a fibrosarcoma immortalized cell line HT1080 derived from the connective tissue from a 35 year old male. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted TAP pretreated RNA < 200 nucleotides in size.
experiment encode accession: ENCSR855CYO
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-12-17
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB948SQG
size range: <200

source_name: Homo sapiens HT1080 immortalized cell line nuclear fraction

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/3b4352ba-65a5-4293-80d8-e3752903a74b/@@download/attachment/LID293760.pdf

value: immortalized cell line

value: An immortalized fibrosarcoma cell line of the connective tissue from a 35 year old male.

value: 35 year

value: fibrosarcoma

value: Thomas Gingeras, CSHL

value: nucleus

value: ENCBS039VHD at ENCODE; https://www.encodeproject.org/ENCBS039VHD/

value: Derived from ENCODE donor ENCDO033CRF; https://www.encodeproject.org/ENCDO033CRF/

value: ENCODE dbxrefs Cellosaurus CVCL_0317; http://web.expasy.org/cellosaurus/CVCL_0317

value: ATCC sample source; http://www.atcc.org/products/all/CCL-121.aspx


title: single cell RNA-seq from Purkinje cell (ENCLB720FXC)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 17
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB720FXC
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent

value: Control

value: Purkinje cell

value: primary cell

value: 20 homogenized Purkinje cells from a 20 year old male brain prepared for a pool-split experiment

value: 20 year


title: small RNA-seq from HT1080 (ENCLB244WEU)

description:
https://www.encodeproject.org/experiments/ENCSR855CYO/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from nuclear fractions of a fibrosarcoma immortalized cell line HT1080 derived from the connective tissue from a 35 year old male. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted TAP pretreated RNA < 200 nucleotides in size.
experiment encode accession: ENCSR855CYO
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-12-17
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB244WEU
size range: <200

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/80242e54-4d98-4feb-a4ae-2e9dbdcf9e7b/@@download/attachment/LID293761.pdf

value: adult

value: male

value: ENCBS798NML at ENCODE; https://www.encodeproject.org/ENCBS798NML/


title: small RNA-seq from neural progenitor cell (ENCLB688VFK)

description:
https://www.encodeproject.org/experiments/ENCSR828LSC/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a neuronal pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
experiment encode accession: ENCSR828LSC
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2015-01-08
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB688VFK
size range: <200

source_name: Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/5a2e3de9-e10e-400c-af5f-18df8c7bd4b8/@@download/attachment/LID294106.pdf

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: single cell RNA-seq from Purkinje cell (ENCLB912XSU)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 20
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB912XSU
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent

value: Control

value: Purkinje cell

value: normal

value: Barbara Wold, Caltech

value: ENCBS135VDR at ENCODE; https://www.encodeproject.org/ENCBS135VDR/

value: Derived from ENCODE donor ENCDO377OGA; https://www.encodeproject.org/ENCDO377OGA/


title: single cell RNA-seq from Purkinje cell (ENCLB294BYK)

description:
https://www.encodeproject.org/experiments/ENCSR888LYA/
***************
biological replicate number: 1
technical replicate number: 8
description: RNA-seq on single cell equivalents of 20 excised and homogenized Purkinje cells from a 20 year old human male
experiment encode accession: ENCSR888LYA
assay title: single cell RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB294BYK
size range: >200
spikeins used: /references/ENCSR013YHQ/, /references/ENCSR133ALU/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: cell-equivalent

value: primary cell

value: 20 homogenized Purkinje cells from a 20 year old male brain prepared for a pool-split experiment

value: 20 year

value: adult

value: male


title: small RNA-seq from HT-29 (ENCLB927WLV)

description:
https://www.encodeproject.org/experiments/ENCSR807KQN/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
experiment encode accession: ENCSR807KQN
assay title: small RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-11-20
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB927WLV
size range: <200

source_name: Homo sapiens HT-29 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/34bb9131-4369-4ebb-a212-15cee7f7dc73/@@download/attachment/LID288438.pdf

value: immortalized cell line

value: adenocarcinoma colon cells

value: 44 year

value: colorectal adenocarcinoma

value: Bradley Bernstein, Broad

value: ENCBS604AAA at ENCODE; https://www.encodeproject.org/ENCBS604AAA/

value: Derived from ENCODE donor ENCDO347AAA; https://www.encodeproject.org/ENCDO347AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0320; http://web.expasy.org/cellosaurus/CVCL_0320

value: ATCC sample source; http://www.atcc.org/products/all/HTB-38.aspx