title: ChIP-seq from forebrain (ENCLB333HFR)

description:
https://www.encodeproject.org/experiments/ENCSR587JRQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR587JRQ
assay title: ChIP-seq
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB333HFR
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (16.5 days)

value: Control

value: forebrain

value: Forebrain from 41 embyonic 16.5 day mice

value: ENCBS512LKA at ENCODE; https://www.encodeproject.org/ENCBS512LKA/


title: WGBS from embryonic facial prominence (ENCLB319LJN)

status: Public on Jun 22 2016

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR587ASA/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR587ASA
assay title: WGBS
assembly: mm10
encode release date: 2015-08-18
lab: Joe Ecker, Salk
library encode accession: ENCLB319LJN
size range: 180-500

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Mus musculus

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (13.5 days)

value: embryonic facial prominence

value: tissue

tag: description

value: Embryonic facial prominence from embryonic 13.5 day mice

tag: biosample encode accession

tag: age

tag: dev stage

value: embryonic

tag: Sex

value: pooled male and female

tag: health state

value: healthy

tag: lab

value: Len Pennacchio, LBNL

tag: link

value: ENCBS764ZZN at ENCODE; https://www.encodeproject.org/ENCBS764ZZN/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from embryonic facial prominence (ENCLB289VXJ)

description:
https://www.encodeproject.org/experiments/ENCSR587ASA/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR587ASA
assay title: WGBS
assembly: mm10
encode release date: 2015-08-18
lab: Joe Ecker, Salk
library encode accession: ENCLB289VXJ
size range: 180-500

value: ENCBS847MIW at ENCODE; https://www.encodeproject.org/ENCBS847MIW/


title: WGBS from embryonic facial prominence (ENCLB452KAH)

description:
https://www.encodeproject.org/experiments/ENCSR587ASA/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR587ASA
assay title: WGBS
assembly: mm10
encode release date: 2015-08-18
lab: Joe Ecker, Salk
library encode accession: ENCLB452KAH
size range: 180-500


title: WGBS from embryonic facial prominence (ENCLB334QNS)

description:
https://www.encodeproject.org/experiments/ENCSR587ASA/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR587ASA
assay title: WGBS
assembly: mm10
encode release date: 2015-08-18
lab: Joe Ecker, Salk
library encode accession: ENCLB334QNS
size range: 180-500


title: ChIP-seq from lung (ENCLB147YDE)

description:
https://www.encodeproject.org/experiments/ENCSR579UVB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR579UVB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB147YDE
size range: 300-500

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (16.5 days)

tag: antibody

value: lung

value: Lung from 41 embyonic 16.5 day mice

value: ENCBS833ZFI at ENCODE; https://www.encodeproject.org/ENCBS833ZFI/


title: ChIP-seq from intestine (ENCLB618OJL)

description:
https://www.encodeproject.org/experiments/ENCSR333ZWB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR333ZWB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB618OJL
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)

value: intestine

value: Intestine from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS560AAA at ENCODE; https://www.encodeproject.org/ENCBS560AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from intestine (ENCLB777WSJ)

description:
https://www.encodeproject.org/experiments/ENCSR333ZWB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR333ZWB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB777WSJ
size range: 300-500

value: tissue

value: Intestine from 15 postnatal 0 day mice

value: ENCBS044AAA at ENCODE; https://www.encodeproject.org/ENCBS044AAA/


title: ChIP-seq from lung (ENCLB965ZXF)

description:
https://www.encodeproject.org/experiments/ENCSR579UVB/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR579UVB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB965ZXF
size range: 300-500

value: Lung pooled from embyonic 16.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: ENCBS377RBN at ENCODE; https://www.encodeproject.org/ENCBS377RBN/


title: ChIP-seq from neural tube (ENCLB728DAE)

description:
https://www.encodeproject.org/experiments/ENCSR579RZO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR579RZO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR254WNU
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB728DAE
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue mixed sex embryo (14.5 days)

value: neural tube

value: Neural tube from 24 embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS013AAA at ENCODE; https://www.encodeproject.org/ENCBS013AAA/


title: ChIP-seq from liver (ENCLB840VCG)

description:
https://www.encodeproject.org/experiments/ENCSR577SDJ/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K4me3 ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR577SDJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR274AQL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB840VCG
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days)

value: liver

value: Liver from 62 embryonic 15.5 day mice

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from limb (ENCLB519IWV)

description:
https://www.encodeproject.org/experiments/ENCSR332UCY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 15.5 day mouse limb
experiment encode accession: ENCSR332UCY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR070OXL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB519IWV
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (15.5 days)

value: limb

value: Limb from 78 embryonic 15.5 day mice

value: ENCBS735QNY at ENCODE; https://www.encodeproject.org/ENCBS735QNY/


title: ChIP-seq from hindbrain (ENCLB851BJR)

description:
https://www.encodeproject.org/experiments/ENCSR332JYZ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR332JYZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR066SPF
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB851BJR
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex postnatal (0 days)

value: hindbrain

value: tissue

value: Hindbrain from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS556AAA at ENCODE; https://www.encodeproject.org/ENCBS556AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from limb (ENCLB021DEU)

description:
https://www.encodeproject.org/experiments/ENCSR332UCY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 15.5 day mouse limb
experiment encode accession: ENCSR332UCY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR070OXL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB021DEU
size range: 300-500

value: Limb from 62 embryonic 15.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: ENCBS696JKV at ENCODE; https://www.encodeproject.org/ENCBS696JKV/


title: ChIP-seq from liver (ENCLB621VBF)

description:
https://www.encodeproject.org/experiments/ENCSR573MJR/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR573MJR
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB621VBF
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (11.5 days)

value: Control

value: liver

value: Liver from 109 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS746POP at ENCODE; https://www.encodeproject.org/ENCBS746POP/


title: ChIP-seq from heart (ENCLB186SCX)

description:
https://www.encodeproject.org/experiments/ENCSR334IOH/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR334IOH
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB186SCX
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex postnatal (0 days)

value: heart

value: Heart from pooled postnatal 0 day mice

value: ENCBS557AAA at ENCODE; https://www.encodeproject.org/ENCBS557AAA/


title: ChIP-seq from liver (ENCLB316PJQ)

description:
https://www.encodeproject.org/experiments/ENCSR578RLI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR578RLI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR617RDY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB316PJQ
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap liver tissue mixed sex postnatal (0 days)

value: tissue

value: Liver from 15 postnatal 0 day mice

value: 0 day

value: ENCBS043AAA at ENCODE; https://www.encodeproject.org/ENCBS043AAA/


title: ChIP-seq from hindbrain (ENCLB777JZX)

description:
https://www.encodeproject.org/experiments/ENCSR332JYZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR332JYZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR066SPF
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB777JZX
size range: 300-500

value: hindbrain

value: Hindbrain from 15 postnatal 0 day mice

value: postnatal

value: ENCBS040AAA at ENCODE; https://www.encodeproject.org/ENCBS040AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from kidney (ENCLB651GCL)

description:
https://www.encodeproject.org/experiments/ENCSR569UCG/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR569UCG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB651GCL
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex embryo (14.5 days)

value: kidney

value: Kidney from pooled embryonic 14.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: ENCBS569AAA at ENCODE; https://www.encodeproject.org/ENCBS569AAA/


title: ChIP-seq from liver (ENCLB335KRX)

description:
https://www.encodeproject.org/experiments/ENCSR573MJR/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR573MJR
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB335KRX
size range: 300-500

value: Control

value: liver

value: Liver from pooled embryonic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS522YOW at ENCODE; https://www.encodeproject.org/ENCBS522YOW/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from embryonic facial prominence (ENCLB903WSL)

description:
https://www.encodeproject.org/experiments/ENCSR329ZEN/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR329ZEN
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB903WSL
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue mixed sex embryo (14.5 days)

value: embryonic facial prominence

value: tissue

value: Craniofacial prominence from 34 embryonic 14.5 day mice

value: ENCBS024AAA at ENCODE; https://www.encodeproject.org/ENCBS024AAA/


title: ChIP-seq from kidney (ENCLB496BBT)

description:
https://www.encodeproject.org/experiments/ENCSR569UCG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR569UCG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB496BBT
size range: 300-500

value: ENCBS565AAA at ENCODE; https://www.encodeproject.org/ENCBS565AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from forebrain (ENCLB290YVR)

description:
https://www.encodeproject.org/experiments/ENCSR587JRQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR587JRQ
assay title: ChIP-seq
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB290YVR
size range: 300-500

value: forebrain

value: Forebrain pooled from embyonic 16.5 day mice

value: ENCBS156DHU at ENCODE; https://www.encodeproject.org/ENCBS156DHU/


title: ChIP-seq from hindbrain (ENCLB326XAO)

description:
https://www.encodeproject.org/experiments/ENCSR563WKD/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR563WKD
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB326XAO
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days)

value: hindbrain

value: Hindbrain from 88 embyronic 11.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: ENCBS976DPO at ENCODE; https://www.encodeproject.org/ENCBS976DPO/


title: ChIP-seq from liver (ENCLB157SLF)

description:
https://www.encodeproject.org/experiments/ENCSR578RLI/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me2 ChIP-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR578RLI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR617RDY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB157SLF
size range: 300-500

value: liver

value: Liver from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: Len Pennacchio, LBNL

value: ENCBS559AAA at ENCODE; https://www.encodeproject.org/ENCBS559AAA/


title: ChIP-seq from liver (ENCLB185QNE)

description:
https://www.encodeproject.org/experiments/ENCSR570HJI/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR570HJI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR274AQL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB185QNE
size range: 300-500

value: tissue

value: Liver from 62 embryonic 15.5 day mice

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: microRNA-seq from heart (ENCLB531TWW)

description:
https://www.encodeproject.org/experiments/ENCSR329THX/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on embryonic 13.5 day mouse heart
experiment encode accession: ENCSR329THX
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-02-18
lab: Ali Mortazavi, UCI
library encode accession: ENCLB531TWW
size range: <30

library_source: transcriptomic

molecule: total RNA

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (13.5 days)

value: heart

value: Heart from embryonic 13.5 day mice

value: ENCBS490ZWZ at ENCODE; https://www.encodeproject.org/ENCBS490ZWZ/


title: ChIP-seq from heart (ENCLB944LFM)

description:
https://www.encodeproject.org/experiments/ENCSR560CIG/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR560CIG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR424WHM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB944LFM
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (15.5 days)

value: Heart from 62 embryonic 15.5 day mice

value: embryonic

value: ENCBS909LOF at ENCODE; https://www.encodeproject.org/ENCBS909LOF/


title: ChIP-seq from heart (ENCLB577ORV)

description:
https://www.encodeproject.org/experiments/ENCSR560CIG/
***************
biological replicate number: 1
technical replicate number: 3,1,2
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR560CIG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR424WHM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB577ORV
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: Heart from 78 embryonic 15.5 day mice

value: pooled male and female

value: healthy

value: ENCBS595EMK at ENCODE; https://www.encodeproject.org/ENCBS595EMK/


title: ChIP-seq from lung (ENCLB133CPL)

description:
https://www.encodeproject.org/experiments/ENCSR559FAB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR559FAB
assay title: ChIP-seq
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB133CPL
size range: 300-500

value: Control

value: lung

value: Lung pooled from embyonic 16.5 day mice

value: ENCBS377RBN at ENCODE; https://www.encodeproject.org/ENCBS377RBN/


title: ChIP-seq from stomach (ENCLB998CTB)

description:
https://www.encodeproject.org/experiments/ENCSR556DLJ/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on postnatal 0 day mouse stomach
experiment encode accession: ENCSR556DLJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR050VUZ
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB998CTB
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex postnatal (0 days)

value: stomach

value: tissue

value: Stomach from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: Len Pennacchio, LBNL

value: ENCBS045AAA at ENCODE; https://www.encodeproject.org/ENCBS045AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from hindbrain (ENCLB874JFG)

description:
https://www.encodeproject.org/experiments/ENCSR325JLI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR325JLI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR545RUT
encode release date: 2016-03-16
lab: Bing Ren, UCSD
library encode accession: ENCLB874JFG
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (13.5 days)

value: hindbrain

value: Hindbrain from embryonic 13.5 day mice

value: embryonic

value: ENCBS052EWC at ENCODE; https://www.encodeproject.org/ENCBS052EWC/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from liver (ENCLB396KDS)

description:
https://www.encodeproject.org/experiments/ENCSR550CYA/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR550CYA
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB396KDS
size range: 180-500

extract_protocol:
general protocol: https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png
general protocol: https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png
extraction method: Qiagen DNeasy Blood and Tissue Kit
general protocol: https://www.encodeproject.org/documents/9d5f346e-88d3-45e2-b28a-2b26f537490f/@@download/attachment/Ecker_Methyl_protocol_v030114.pdf

value: liver

value: Liver from 15 postnatal 0 day mice

value: pooled male and female

value: healthy

value: ENCBS043AAA at ENCODE; https://www.encodeproject.org/ENCBS043AAA/


title: WGBS from liver (ENCLB627VJP)

description:
https://www.encodeproject.org/experiments/ENCSR550CYA/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR550CYA
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB627VJP
size range: 180-500

value: tissue

value: Liver from pooled postnatal 0 day mice

value: ENCBS559AAA at ENCODE; https://www.encodeproject.org/ENCBS559AAA/


title: ChIP-seq from embryonic facial prominence (ENCLB631JKK)

description:
https://www.encodeproject.org/experiments/ENCSR329ZEN/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR329ZEN
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB631JKK
size range: 300-500

value: Control

value: embryonic facial prominence

value: Craniofacial prominence from 24 embryonic 14.5 day mice

value: ENCBS012AAA at ENCODE; https://www.encodeproject.org/ENCBS012AAA/


title: ChIP-seq from hindbrain (ENCLB620BTX)

description:
https://www.encodeproject.org/experiments/ENCSR563WKD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR563WKD
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB620BTX
size range: 300-500

value: hindbrain

value: Hindbrain from 109 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS199NDR at ENCODE; https://www.encodeproject.org/ENCBS199NDR/


title: ChIP-seq from hindbrain (ENCLB126DGA)

description:
https://www.encodeproject.org/experiments/ENCSR325JLI/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR325JLI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR545RUT
encode release date: 2016-03-16
lab: Bing Ren, UCSD
library encode accession: ENCLB126DGA
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: Hindbrain from embryonic 13.5 day mice

value: embryonic

value: ENCBS296PIR at ENCODE; https://www.encodeproject.org/ENCBS296PIR/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from liver (ENCLB621JMK)

description:
https://www.encodeproject.org/experiments/ENCSR550CYA/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR550CYA
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB621JMK
size range: 180-500

value: liver

value: Liver from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: healthy

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from limb (ENCLB252QUE)

description:
https://www.encodeproject.org/experiments/ENCSR548BCO/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR548BCO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB252QUE
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (11.5 days)

value: limb

value: tissue

value: Limb from 88 embyronic 11.5 day mice

value: ENCBS681XPR at ENCODE; https://www.encodeproject.org/ENCBS681XPR/


title: WGBS from stomach (ENCLB281YCO)

description:
https://www.encodeproject.org/experiments/ENCSR545WRA/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR545WRA
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB281YCO
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex embryo (14.5 days)

value: stomach

value: Stomach pooled from embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS564AAA at ENCODE; https://www.encodeproject.org/ENCBS564AAA/


title: WGBS from stomach (ENCLB237QIL)

description:
https://www.encodeproject.org/experiments/ENCSR545WRA/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR545WRA
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB237QIL
size range: 180-500

value: embryonic

value: ENCBS568AAA at ENCODE; https://www.encodeproject.org/ENCBS568AAA/


title: WGBS from stomach (ENCLB587XQM)

description:
https://www.encodeproject.org/experiments/ENCSR545WRA/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR545WRA
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB587XQM
size range: 180-500


title: WGBS from stomach (ENCLB301HRZ)

description:
https://www.encodeproject.org/experiments/ENCSR545WRA/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR545WRA
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB301HRZ
size range: 180-500


title: ChIP-seq from lung (ENCLB586NJL)

description:
https://www.encodeproject.org/experiments/ENCSR559FAB/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR559FAB
assay title: ChIP-seq
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB586NJL
size range: 300-500

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (16.5 days)

value: Control

value: lung

value: Lung from 41 embyonic 16.5 day mice

value: ENCBS833ZFI at ENCODE; https://www.encodeproject.org/ENCBS833ZFI/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB416OPT)

description:
https://www.encodeproject.org/experiments/ENCSR320EEW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR320EEW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB416OPT
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days)

value: forebrain

value: Forebrain from 34 embryonic 14.5 day mice

value: pooled male and female

value: healthy

value: ENCBS014AAA at ENCODE; https://www.encodeproject.org/ENCBS014AAA/


title: ChIP-seq from kidney (ENCLB109TKH)

description:
https://www.encodeproject.org/experiments/ENCSR320UJD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 15.5 day mouse kidney
experiment encode accession: ENCSR320UJD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR780JSE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB109TKH
size range: 300-500

source_name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (15.5 days)

value: kidney

value: tissue

value: Kidney from 78 embryonic 15.5 day mice

value: ENCBS899UOK at ENCODE; https://www.encodeproject.org/ENCBS899UOK/


title: ChIP-seq from midbrain (ENCLB530TEY)

description:
https://www.encodeproject.org/experiments/ENCSR545BRW/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR545BRW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB530TEY
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (11.5 days)

value: midbrain

value: Midbrain of 109 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS228OBS at ENCODE; https://www.encodeproject.org/ENCBS228OBS/


title: ChIP-seq from kidney (ENCLB887BRU)

description:
https://www.encodeproject.org/experiments/ENCSR320UJD/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 15.5 day mouse kidney
experiment encode accession: ENCSR320UJD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR780JSE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB887BRU
size range: 300-500

value: Kidney from 62 embryonic 15.5 day mice

value: embryonic

value: ENCBS924ZKF at ENCODE; https://www.encodeproject.org/ENCBS924ZKF/


title: ChIP-seq from limb (ENCLB185SRH)

description:
https://www.encodeproject.org/experiments/ENCSR548BCO/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR548BCO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB185SRH
size range: 300-500

value: limb

value: Limb from 109 embyronic 11.5 day mice

value: ENCBS066IEL at ENCODE; https://www.encodeproject.org/ENCBS066IEL/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from liver (ENCLB584RGD)

description:
https://www.encodeproject.org/experiments/ENCSR550CYA/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR550CYA
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB584RGD
size range: 180-500

value: liver

value: Liver from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: healthy

value: ENCBS559AAA at ENCODE; https://www.encodeproject.org/ENCBS559AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from midbrain (ENCLB347KXS)

description:
https://www.encodeproject.org/experiments/ENCSR545BRW/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR545BRW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB347KXS
size range: 300-500

value: midbrain

value: tissue

value: Midbrain from 88 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS802FTI at ENCODE; https://www.encodeproject.org/ENCBS802FTI/


title: WGBS from lung (ENCLB208KTZ)

description:
https://www.encodeproject.org/experiments/ENCSR535YCH/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR535YCH
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB208KTZ
size range: 180-500

value: lung

value: Lung pooled from embyonic 16.5 day mice

value: embryonic

value: ENCBS377RBN at ENCODE; https://www.encodeproject.org/ENCBS377RBN/


title: ChIP-seq from forebrain (ENCLB532LIP)

description:
https://www.encodeproject.org/experiments/ENCSR320EEW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR320EEW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB532LIP
size range: 300-500

value: forebrain

value: Forebrain from 24 embyonic 14.5 day mice

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/


title: ChIP-seq from stomach (ENCLB096CBU)

description:
https://www.encodeproject.org/experiments/ENCSR316CNR/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR316CNR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR497YBQ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB096CBU
size range: 300-500

value: stomach

value: Stomach pooled from embryonic 14.5 day mice

value: ENCBS568AAA at ENCODE; https://www.encodeproject.org/ENCBS568AAA/


title: microRNA-seq from heart (ENCLB957TOZ)

description:
https://www.encodeproject.org/experiments/ENCSR329THX/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on embryonic 13.5 day mouse heart
experiment encode accession: ENCSR329THX
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-02-18
lab: Ali Mortazavi, UCI
library encode accession: ENCLB957TOZ
size range: <30

value: heart

value: Heart from embryonic 13.5 day mice

value: pooled male and female

value: healthy

value: ENCBS814PLT at ENCODE; https://www.encodeproject.org/ENCBS814PLT/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from stomach (ENCLB726VSZ)

description:
https://www.encodeproject.org/experiments/ENCSR316CNR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR316CNR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR497YBQ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB726VSZ
size range: 300-500

value: tissue

value: Len Pennacchio, LBNL

value: ENCBS564AAA at ENCODE; https://www.encodeproject.org/ENCBS564AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from midbrain (ENCLB139KPW)

description:
https://www.encodeproject.org/experiments/ENCSR322XHD/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR322XHD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR889XXJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB139KPW
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex postnatal (0 days)

value: midbrain

value: Midbrain from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS555AAA at ENCODE; https://www.encodeproject.org/ENCBS555AAA/


title: WGBS from lung (ENCLB572GST)

description:
https://www.encodeproject.org/experiments/ENCSR535YCH/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR535YCH
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB572GST
size range: 180-500

value: lung

value: Lung from 41 embyonic 16.5 day mice

value: embryonic

value: ENCBS833ZFI at ENCODE; https://www.encodeproject.org/ENCBS833ZFI/


title: WGBS from lung (ENCLB477TFU)

description:
https://www.encodeproject.org/experiments/ENCSR535YCH/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR535YCH
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB477TFU
size range: 180-500

value: pooled male and female


title: ChIP-seq from neural tube (ENCLB043KXI)

description:
https://www.encodeproject.org/experiments/ENCSR531RZS/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR531RZS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB043KXI
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (11.5 days)

value: neural tube

value: Neural tube from 88 embyronic 11.5 day mice

value: healthy

value: ENCBS183YVD at ENCODE; https://www.encodeproject.org/ENCBS183YVD/


title: ChIP-seq from midbrain (ENCLB864SZA)

description:
https://www.encodeproject.org/experiments/ENCSR535NVF/
***************
biological replicate number: 2
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR535NVF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-07-07
lab: Bing Ren, UCSD
library encode accession: ENCLB864SZA
size range: 300-500

value: tissue

value: Midbrain from 88 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS802FTI at ENCODE; https://www.encodeproject.org/ENCBS802FTI/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from neural tube (ENCLB568DCE)

description:
https://www.encodeproject.org/experiments/ENCSR531RZS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR531RZS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB568DCE
size range: 300-500

value: Neural tube from 109 embyronic 11.5 day mice

value: ENCBS402TUS at ENCODE; https://www.encodeproject.org/ENCBS402TUS/


title: ChIP-seq from midbrain (ENCLB952DEQ)

description:
https://www.encodeproject.org/experiments/ENCSR535NVF/
***************
biological replicate number: 1
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR535NVF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-07-07
lab: Bing Ren, UCSD
library encode accession: ENCLB952DEQ
size range: 300-500

value: midbrain

value: Midbrain of 109 embyronic 11.5 day mice

value: ENCBS228OBS at ENCODE; https://www.encodeproject.org/ENCBS228OBS/


title: WGBS from lung (ENCLB768HWT)

description:
https://www.encodeproject.org/experiments/ENCSR535YCH/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR535YCH
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB768HWT
size range: 180-500

value: lung

value: Lung pooled from embyonic 16.5 day mice

value: embryonic

value: ENCBS377RBN at ENCODE; https://www.encodeproject.org/ENCBS377RBN/


title: ChIP-seq from hindbrain (ENCLB098NNC)

description:
https://www.encodeproject.org/experiments/ENCSR315ZEU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR315ZEU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR545RUT
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB098NNC
size range: 300-500

value: hindbrain

value: Hindbrain from embryonic 13.5 day mice

value: pooled male and female

value: ENCBS296PIR at ENCODE; https://www.encodeproject.org/ENCBS296PIR/


title: ChIP-seq from heart (ENCLB537KZE)

description:
https://www.encodeproject.org/experiments/ENCSR519DNE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR519DNE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR334IOH
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB537KZE
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex postnatal (0 days)

value: heart

value: tissue

value: Heart from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: healthy

value: ENCBS557AAA at ENCODE; https://www.encodeproject.org/ENCBS557AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from limb (ENCLB300IAS)

description:
https://www.encodeproject.org/experiments/ENCSR529ERN/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 14.5 day mouse limb
experiment encode accession: ENCSR529ERN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR232EOO
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB300IAS
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap limb tissue mixed sex embryo (14.5 days)

value: limb

value: Limb from 34 embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS023AAA at ENCODE; https://www.encodeproject.org/ENCBS023AAA/


title: ChIP-seq from midbrain (ENCLB390RXZ)

description:
https://www.encodeproject.org/experiments/ENCSR314FGC/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse midbrain
experiment encode accession: ENCSR314FGC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR817FFF
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB390RXZ
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (16.5 days)

value: midbrain

value: Midbrain from 37 embryonic 16.5 day mice

value: embryonic

value: ENCBS463JSE at ENCODE; https://www.encodeproject.org/ENCBS463JSE/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from hindbrain (ENCLB283SXL)

description:
https://www.encodeproject.org/experiments/ENCSR315ZEU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR315ZEU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR545RUT
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB283SXL
size range: 300-500

value: hindbrain

value: Hindbrain from embryonic 13.5 day mice

value: pooled male and female

value: ENCBS052EWC at ENCODE; https://www.encodeproject.org/ENCBS052EWC/


title: ChIP-seq from intestine (ENCLB651GMG)

description:
https://www.encodeproject.org/experiments/ENCSR515XWH/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR515XWH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR635JIC
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB651GMG
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (16.5 days)

value: intestine

value: tissue

value: Intestine pooled from embyonic 16.5 day mice

value: ENCBS856EWN at ENCODE; https://www.encodeproject.org/ENCBS856EWN/


title: ChIP-seq from midbrain (ENCLB477MNV)

description:
https://www.encodeproject.org/experiments/ENCSR314FGC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse midbrain
experiment encode accession: ENCSR314FGC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR817FFF
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB477MNV
size range: 300-500

value: Midbrain pooled from embyonic 16.5 day mice

value: healthy

value: ENCBS684MLE at ENCODE; https://www.encodeproject.org/ENCBS684MLE/


title: ChIP-seq from embryonic facial prominence (ENCLB305FRY)

description:
https://www.encodeproject.org/experiments/ENCSR511WPK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR511WPK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR068AQC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB305FRY
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (11.5 days)

value: embryonic facial prominence

value: Craniofacial prominence from 109 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS141GPQ at ENCODE; https://www.encodeproject.org/ENCBS141GPQ/


title: ChIP-seq from neural tube (ENCLB212NKZ)

description:
https://www.encodeproject.org/experiments/ENCSR511LWL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR511LWL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR254WNU
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB212NKZ
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue mixed sex embryo (14.5 days)

value: neural tube

value: Neural tube from 24 embryonic 14.5 day mice

value: embryonic

value: ENCBS013AAA at ENCODE; https://www.encodeproject.org/ENCBS013AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from intestine (ENCLB009SXQ)

description:
https://www.encodeproject.org/experiments/ENCSR515XWH/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR515XWH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR635JIC
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB009SXQ
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: Intestine from 41 embyonic 16.5 day mice

value: pooled male and female

value: ENCBS072GMU at ENCODE; https://www.encodeproject.org/ENCBS072GMU/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from liver (ENCLB835ZHP)

description:
https://www.encodeproject.org/experiments/ENCSR510CGB/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR510CGB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR274AQL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB835ZHP
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days)

value: liver

value: tissue

value: Liver from 62 embryonic 15.5 day mice

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/


title: ChIP-seq from forebrain (ENCLB665LFV)

description:
https://www.encodeproject.org/experiments/ENCSR311YPF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 13.5 day mouse forebrain
experiment encode accession: ENCSR311YPF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR583ZEV
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB665LFV
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (13.5 days)

value: forebrain

value: Forebrain from embryonic 13.5 day mice

value: healthy

value: ENCBS793ZRY at ENCODE; https://www.encodeproject.org/ENCBS793ZRY/


title: ChIP-seq from forebrain (ENCLB459NWY)

description:
https://www.encodeproject.org/experiments/ENCSR311YPF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 13.5 day mouse forebrain
experiment encode accession: ENCSR311YPF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR583ZEV
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB459NWY
size range: 300-500

value: Len Pennacchio, LBNL

value: ENCBS273RVL at ENCODE; https://www.encodeproject.org/ENCBS273RVL/


title: ChIP-seq from intestine (ENCLB345SGB)

description:
https://www.encodeproject.org/experiments/ENCSR311VKI/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR311VKI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR872UEE
encode release date: 2016-03-17
lab: Bing Ren, UCSD
library encode accession: ENCLB345SGB
size range: 300-500

source_name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (15.5 days)

value: intestine

value: Intestine from 62 embryonic 15.5 day mice

value: embryonic

value: ENCBS836WEU at ENCODE; https://www.encodeproject.org/ENCBS836WEU/


title: total RNA-seq from neural tube (ENCLB224ETE)

description:
https://www.encodeproject.org/experiments/ENCSR508GWZ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR508GWZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB224ETE
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (12.5 days)

value: neural tube

value: Neural tube from 88 embryonic 12.5 day mice

value: pooled male and female

value: ENCBS254TSW at ENCODE; https://www.encodeproject.org/ENCBS254TSW/


title: ChIP-seq from midbrain (ENCLB758IBM)

description:
https://www.encodeproject.org/experiments/ENCSR487RAU/
***************
biological replicate number: 1
technical replicate number: 3,1,2
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse midbrain
experiment encode accession: ENCSR487RAU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR748XBE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB758IBM
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (15.5 days)

value: midbrain

value: tissue

value: Midbrain from 78 embryonic 15.5 day mice

value: ENCBS190ETJ at ENCODE; https://www.encodeproject.org/ENCBS190ETJ/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from intestine (ENCLB946PMD)

description:
https://www.encodeproject.org/experiments/ENCSR311VKI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR311VKI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR872UEE
encode release date: 2016-03-17
lab: Bing Ren, UCSD
library encode accession: ENCLB946PMD
size range: 300-500

value: Intestine from 78 embryonic 15.5 day mice

value: healthy

value: ENCBS401LLS at ENCODE; https://www.encodeproject.org/ENCBS401LLS/


title: ChIP-seq from liver (ENCLB059GVL)

description:
https://www.encodeproject.org/experiments/ENCSR487OLC/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse liver
experiment encode accession: ENCSR487OLC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR082JEN
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB059GVL
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (16.5 days)

value: liver

value: Liver from 41 embyonic 16.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS279BWR at ENCODE; https://www.encodeproject.org/ENCBS279BWR/


title: ChIP-seq from liver (ENCLB687YGT)

description:
https://www.encodeproject.org/experiments/ENCSR479LFP/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27ac ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR479LFP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR274AQL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB687YGT
size range: 300-500

value: Liver from 62 embryonic 15.5 day mice

value: embryonic

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/


title: ChIP-seq from midbrain (ENCLB166ZFK)

description:
https://www.encodeproject.org/experiments/ENCSR311TLE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR311TLE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB166ZFK
size range: 300-500

value: Midbrain from 88 embyronic 11.5 day mice

value: pooled male and female

value: ENCBS802FTI at ENCODE; https://www.encodeproject.org/ENCBS802FTI/


title: WGBS from neural tube (ENCLB311FFB)

description:
https://www.encodeproject.org/experiments/ENCSR476OEL/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR476OEL
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB311FFB
size range: 180-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (15.5 days)

value: neural tube

value: tissue

value: Neural tube from 62 embryonic 15.5 day mice

value: ENCBS206NRE at ENCODE; https://www.encodeproject.org/ENCBS206NRE/


title: ChIP-seq from hindbrain (ENCLB161EMU)

description:
https://www.encodeproject.org/experiments/ENCSR308TAV/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR308TAV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR066SPF
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB161EMU
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex postnatal (0 days)

value: hindbrain

value: Hindbrain from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS040AAA at ENCODE; https://www.encodeproject.org/ENCBS040AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from neural tube (ENCLB457OTO)

description:
https://www.encodeproject.org/experiments/ENCSR476OEL/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR476OEL
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB457OTO
size range: 180-500

value: Neural tube from 78 embryonic 15.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS944KEZ at ENCODE; https://www.encodeproject.org/ENCBS944KEZ/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from neural tube (ENCLB804GKG)

description:
https://www.encodeproject.org/experiments/ENCSR476OEL/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR476OEL
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB804GKG
size range: 180-500

value: embryonic

value: pooled male and female


title: WGBS from embryonic facial prominence (ENCLB454WAB)

description:
https://www.encodeproject.org/experiments/ENCSR473ZCM/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse facial prominence
experiment encode accession: ENCSR473ZCM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB454WAB
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue mixed sex embryo (14.5 days)

value: embryonic facial prominence

value: Craniofacial prominence from 34 embryonic 14.5 day mice

value: ENCBS024AAA at ENCODE; https://www.encodeproject.org/ENCBS024AAA/


title: ChIP-seq from embryonic facial prominence (ENCLB659IPZ)

description:
https://www.encodeproject.org/experiments/ENCSR511WPK/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR511WPK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR068AQC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB659IPZ
size range: 300-500

value: tissue

value: Craniofacial prominence from 88 embyronic 11.5 day mice

value: ENCBS468NAL at ENCODE; https://www.encodeproject.org/ENCBS468NAL/


title: ChIP-seq from hindbrain (ENCLB464NXA)

description:
https://www.encodeproject.org/experiments/ENCSR308TAV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR308TAV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR066SPF
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB464NXA
size range: 300-500

value: hindbrain

value: Hindbrain from pooled postnatal 0 day mice

value: 0 day

value: ENCBS556AAA at ENCODE; https://www.encodeproject.org/ENCBS556AAA/


title: WGBS from embryonic facial prominence (ENCLB818SOO)

description:
https://www.encodeproject.org/experiments/ENCSR473ZCM/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse facial prominence
experiment encode accession: ENCSR473ZCM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB818SOO
size range: 180-500

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: microRNA-seq from hindbrain (ENCLB250OKP)

description:
https://www.encodeproject.org/experiments/ENCSR308SIN/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR308SIN
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB250OKP
size range: <30

source_name: Mus musculus strain B6NCrl hindbrain tissue postnatal (0 days)

value: single hindbrain from pup 3

value: postnatal

value: not collected

value: Barbara Wold, Caltech

value: ENCBS901BYV at ENCODE; https://www.encodeproject.org/ENCBS901BYV/


title: WGBS from embryonic facial prominence (ENCLB603SLQ)

description:
https://www.encodeproject.org/experiments/ENCSR473ZCM/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse facial prominence
experiment encode accession: ENCSR473ZCM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB603SLQ
size range: 180-500

value: Craniofacial prominence from 24 embryonic 14.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS012AAA at ENCODE; https://www.encodeproject.org/ENCBS012AAA/


title: total RNA-seq from neural tube (ENCLB222KWY)

description:
https://www.encodeproject.org/experiments/ENCSR508GWZ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR508GWZ
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB222KWY
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

value: neural tube

value: tissue

value: Neural tube from 120 embryonic 12.5 day mice

value: ENCBS405OOH at ENCODE; https://www.encodeproject.org/ENCBS405OOH/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from embryonic facial prominence (ENCLB416LSN)

description:
https://www.encodeproject.org/experiments/ENCSR473ZCM/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse facial prominence
experiment encode accession: ENCSR473ZCM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB416LSN
size range: 180-500

value: embryonic facial prominence

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from heart (ENCLB834QYB)

description:
https://www.encodeproject.org/experiments/ENCSR463GJL/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 11.5 day mouse heart
experiment encode accession: ENCSR463GJL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR317ENO
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB834QYB
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (11.5 days)

value: heart

value: Heart from embryonic 11.5 day mice

value: ENCBS046IMM at ENCODE; https://www.encodeproject.org/ENCBS046IMM/


title: ChIP-seq from liver (ENCLB077QIA)

description:
https://www.encodeproject.org/experiments/ENCSR487OLC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse liver
experiment encode accession: ENCSR487OLC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR082JEN
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB077QIA
size range: 300-500

value: liver

value: Liver pooled from embyonic 16.5 day mice

value: ENCBS236CDJ at ENCODE; https://www.encodeproject.org/ENCBS236CDJ/


title: ChIP-seq from liver (ENCLB135UGQ)

description:
https://www.encodeproject.org/experiments/ENCSR458FBL/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse liver
experiment encode accession: ENCSR458FBL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR082JEN
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB135UGQ
size range: 300-500

value: Liver from 41 embyonic 16.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS279BWR at ENCODE; https://www.encodeproject.org/ENCBS279BWR/


title: microRNA-seq from hindbrain (ENCLB993LZM)

description:
https://www.encodeproject.org/experiments/ENCSR308SIN/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR308SIN
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB993LZM
size range: <30

value: hindbrain

value: single hindbrain from pup 1

value: 0 day

value: postnatal

value: not collected

value: Barbara Wold, Caltech

value: ENCBS489BYD at ENCODE; https://www.encodeproject.org/ENCBS489BYD/


title: ChIP-seq from intestine (ENCLB110DDY)

description:
https://www.encodeproject.org/experiments/ENCSR464MQU/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse intestine
experiment encode accession: ENCSR464MQU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR645QSY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB110DDY
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex embryo (14.5 days)

value: intestine

value: tissue

value: Intestine from 34 embryonic 14.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS020AAA at ENCODE; https://www.encodeproject.org/ENCBS020AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from neural tube (ENCLB940BKV)

description:
https://www.encodeproject.org/experiments/ENCSR450UMG/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR450UMG
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB940BKV
size range: 180-500

value: neural tube

value: Neural tube from 34 embryonic 14.5 day mice

value: embryonic

value: ENCBS025AAA at ENCODE; https://www.encodeproject.org/ENCBS025AAA/


title: ChIP-seq from liver (ENCLB201ARR)

description:
https://www.encodeproject.org/experiments/ENCSR458FBL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse liver
experiment encode accession: ENCSR458FBL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR082JEN
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB201ARR
size range: 300-500

value: liver

value: Liver pooled from embyonic 16.5 day mice

value: pooled male and female

value: ENCBS236CDJ at ENCODE; https://www.encodeproject.org/ENCBS236CDJ/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from liver (ENCLB600HPL)

description:
https://www.encodeproject.org/experiments/ENCSR308GFM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR308GFM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR617RDY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB600HPL
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap liver tissue mixed sex postnatal (0 days)

value: Liver from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS043AAA at ENCODE; https://www.encodeproject.org/ENCBS043AAA/


title: WGBS from neural tube (ENCLB315NYL)

description:
https://www.encodeproject.org/experiments/ENCSR450UMG/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR450UMG
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB315NYL
size range: 180-500

value: tissue

value: Neural tube from 24 embryonic 14.5 day mice

value: healthy

value: ENCBS013AAA at ENCODE; https://www.encodeproject.org/ENCBS013AAA/


title: ChIP-seq from lung (ENCLB849RGV)

description:
https://www.encodeproject.org/experiments/ENCSR305GII/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 15.5 day mouse lung
experiment encode accession: ENCSR305GII
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR371AKO
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB849RGV
size range: 300-500

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (15.5 days)

value: lung

value: Lung from 78 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS467HSM at ENCODE; https://www.encodeproject.org/ENCBS467HSM/


title: WGBS from neural tube (ENCLB229VRK)

description:
https://www.encodeproject.org/experiments/ENCSR450UMG/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR450UMG
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB229VRK
size range: 180-500

value: neural tube

value: Neural tube from 34 embryonic 14.5 day mice

value: embryonic

value: ENCBS025AAA at ENCODE; https://www.encodeproject.org/ENCBS025AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from neural tube (ENCLB661IPD)

description:
https://www.encodeproject.org/experiments/ENCSR450UMG/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR450UMG
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB661IPD
size range: 180-500

value: pooled male and female


title: ChIP-seq from intestine (ENCLB212FUN)

description:
https://www.encodeproject.org/experiments/ENCSR642VYW/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27ac ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR642VYW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB212FUN
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)

value: intestine

value: Intestine from 15 postnatal 0 day mice

value: 0 day

value: ENCBS044AAA at ENCODE; https://www.encodeproject.org/ENCBS044AAA/


title: ChIP-seq from hindbrain (ENCLB392QHR)

description:
https://www.encodeproject.org/experiments/ENCSR299NCJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR299NCJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB392QHR
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days)

value: hindbrain

value: tissue

value: Hindbrain from 88 embyronic 11.5 day mice

value: ENCBS976DPO at ENCODE; https://www.encodeproject.org/ENCBS976DPO/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from midbrain (ENCLB062CPT)

description:
https://www.encodeproject.org/experiments/ENCSR450ITF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR450ITF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB062CPT
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (11.5 days)

value: midbrain

value: Midbrain from 88 embyronic 11.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS802FTI at ENCODE; https://www.encodeproject.org/ENCBS802FTI/


title: ChIP-seq from lung (ENCLB212JXF)

description:
https://www.encodeproject.org/experiments/ENCSR305GII/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 15.5 day mouse lung
experiment encode accession: ENCSR305GII
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR371AKO
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB212JXF
size range: 300-500

value: lung

value: Lung from 62 embryonic 15.5 day mice

value: embryonic

value: ENCBS217WPC at ENCODE; https://www.encodeproject.org/ENCBS217WPC/


title: ChIP-seq from hindbrain (ENCLB698LDR)

description:
https://www.encodeproject.org/experiments/ENCSR458PAO/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR458PAO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR066SPF
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB698LDR
size range: 300-500

value: Hindbrain from pooled postnatal 0 day mice

value: postnatal

value: pooled male and female

value: ENCBS556AAA at ENCODE; https://www.encodeproject.org/ENCBS556AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from heart (ENCLB215CAM)

description:
https://www.encodeproject.org/experiments/ENCSR345RKE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse heart
experiment encode accession: ENCSR345RKE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR840PFW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB215CAM
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex embryo (14.5 days)

value: heart

value: tissue

value: Heart from pooled embryonic 14.5 day mice

value: ENCBS563AAA at ENCODE; https://www.encodeproject.org/ENCBS563AAA/


title: WGBS from neural tube (ENCLB704NKX)

description:
https://www.encodeproject.org/experiments/ENCSR476OEL/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR476OEL
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB704NKX
size range: 180-500

value: neural tube

value: Neural tube from 62 embryonic 15.5 day mice

value: ENCBS206NRE at ENCODE; https://www.encodeproject.org/ENCBS206NRE/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from hindbrain (ENCLB706VIO)

description:
https://www.encodeproject.org/experiments/ENCSR299DRH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR299DRH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685UUM
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB706VIO
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (15.5 days)

value: hindbrain

value: Hindbrain from 78 embryonic 15.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS958AHU at ENCODE; https://www.encodeproject.org/ENCBS958AHU/


title: ChIP-seq from liver (ENCLB814OHL)

description:
https://www.encodeproject.org/experiments/ENCSR308GFM/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR308GFM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR617RDY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB814OHL
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: liver

value: Liver from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS559AAA at ENCODE; https://www.encodeproject.org/ENCBS559AAA/


title: ChIP-seq from neural tube (ENCLB253LBH)

description:
https://www.encodeproject.org/experiments/ENCSR448TTC/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR448TTC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB253LBH
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (11.5 days)

value: tissue

value: Neural tube from 88 embyronic 11.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS183YVD at ENCODE; https://www.encodeproject.org/ENCBS183YVD/


title: ChIP-seq from liver (ENCLB566HLG)

description:
https://www.encodeproject.org/experiments/ENCSR447DOF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR447DOF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB566HLG
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (11.5 days)

value: Liver from 109 embyronic 11.5 day mice

value: ENCBS746POP at ENCODE; https://www.encodeproject.org/ENCBS746POP/


title: ChIP-seq from liver (ENCLB878BUB)

description:
https://www.encodeproject.org/experiments/ENCSR447DOF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR447DOF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB878BUB
size range: 300-500

value: Liver from pooled embryonic 11.5 day mice

value: ENCBS522YOW at ENCODE; https://www.encodeproject.org/ENCBS522YOW/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from neural tube (ENCLB154GRP)

description:
https://www.encodeproject.org/experiments/ENCSR445UYH/
***************
biological replicate number: 1
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR445UYH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB154GRP
size range: 300-500

value: neural tube

value: Neural tube from 109 embyronic 11.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS402TUS at ENCODE; https://www.encodeproject.org/ENCBS402TUS/


title: ChIP-seq from lung (ENCLB217ONG)

description:
https://www.encodeproject.org/experiments/ENCSR295PFM/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR295PFM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB217ONG
size range: 300-500

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (16.5 days)

value: lung

value: Lung from 41 embyonic 16.5 day mice

value: ENCBS833ZFI at ENCODE; https://www.encodeproject.org/ENCBS833ZFI/


title: ChIP-seq from hindbrain (ENCLB545MCT)

description:
https://www.encodeproject.org/experiments/ENCSR299DRH/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR299DRH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685UUM
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB545MCT
size range: 300-500

value: hindbrain

value: tissue

value: Hindbrain from 62 embryonic 15.5 day mice

value: ENCBS948UKU at ENCODE; https://www.encodeproject.org/ENCBS948UKU/


title: ChIP-seq from embryonic facial prominence (ENCLB582VAL)

description:
https://www.encodeproject.org/experiments/ENCSR447BVY/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR447BVY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742ZUI
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB582VAL
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (13.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from embryonic 13.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS847MIW at ENCODE; https://www.encodeproject.org/ENCBS847MIW/


title: ChIP-seq from forebrain (ENCLB402BWB)

description:
https://www.encodeproject.org/experiments/ENCSR437SFX/
***************
biological replicate number: 1
technical replicate number: 2,1,3
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse forebrain
experiment encode accession: ENCSR437SFX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR880HDV
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB402BWB
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (15.5 days)

value: forebrain

value: Forebrain from 78 embryonic 15.5 day mice

value: ENCBS811RMD at ENCODE; https://www.encodeproject.org/ENCBS811RMD/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from lung (ENCLB246CWJ)

description:
https://www.encodeproject.org/experiments/ENCSR295PFM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR295PFM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB246CWJ
size range: 300-500

value: Lung pooled from embyonic 16.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS377RBN at ENCODE; https://www.encodeproject.org/ENCBS377RBN/


title: WGBS from forebrain (ENCLB326IED)

description:
https://www.encodeproject.org/experiments/ENCSR430SAY/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR430SAY
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB326IED
size range: 180-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (16.5 days)

value: Forebrain pooled from embyonic 16.5 day mice

value: ENCBS156DHU at ENCODE; https://www.encodeproject.org/ENCBS156DHU/


title: ChIP-seq from neural tube (ENCLB825JDB)

description:
https://www.encodeproject.org/experiments/ENCSR445UYH/
***************
biological replicate number: 2
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR445UYH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB825JDB
size range: 300-500

value: neural tube

value: tissue

value: Neural tube from 88 embyronic 11.5 day mice

value: ENCBS183YVD at ENCODE; https://www.encodeproject.org/ENCBS183YVD/


title: WGBS from forebrain (ENCLB288CZY)

description:
https://www.encodeproject.org/experiments/ENCSR430SAY/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR430SAY
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB288CZY
size range: 180-500

value: Forebrain from 41 embyonic 16.5 day mice

value: embryonic

value: ENCBS512LKA at ENCODE; https://www.encodeproject.org/ENCBS512LKA/


title: WGBS from forebrain (ENCLB040XST)

description:
https://www.encodeproject.org/experiments/ENCSR430SAY/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR430SAY
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB040XST
size range: 180-500

value: forebrain

value: pooled male and female


title: ChIP-seq from stomach (ENCLB825CLT)

description:
https://www.encodeproject.org/experiments/ENCSR293ORS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR293ORS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR497YBQ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB825CLT
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex embryo (14.5 days)

value: stomach

value: Stomach pooled from embryonic 14.5 day mice

value: ENCBS564AAA at ENCODE; https://www.encodeproject.org/ENCBS564AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from neural tube (ENCLB421JHW)

description:
https://www.encodeproject.org/experiments/ENCSR289SWJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 13.5 day mouse neural tube
experiment encode accession: ENCSR289SWJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR295GGT
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB421JHW
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (13.5 days)

value: Neural tube from embryonic 13.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS549OYR at ENCODE; https://www.encodeproject.org/ENCBS549OYR/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from midbrain (ENCLB401MIJ)

description:
https://www.encodeproject.org/experiments/ENCSR450ITF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR450ITF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB401MIJ
size range: 300-500

value: midbrain

value: tissue

value: Midbrain of 109 embyronic 11.5 day mice

value: ENCBS228OBS at ENCODE; https://www.encodeproject.org/ENCBS228OBS/


title: WGBS from forebrain (ENCLB690YWZ)

description:
https://www.encodeproject.org/experiments/ENCSR430SAY/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR430SAY
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB690YWZ
size range: 180-500

value: Forebrain pooled from embyonic 16.5 day mice

value: embryonic

value: ENCBS156DHU at ENCODE; https://www.encodeproject.org/ENCBS156DHU/


title: ChIP-seq from neural tube (ENCLB961GLW)

description:
https://www.encodeproject.org/experiments/ENCSR448TTC/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR448TTC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB961GLW
size range: 300-500

value: neural tube

value: Neural tube from 109 embyronic 11.5 day mice

value: pooled male and female

value: ENCBS402TUS at ENCODE; https://www.encodeproject.org/ENCBS402TUS/


title: WGBS from kidney (ENCLB755XGL)

description:
https://www.encodeproject.org/experiments/ENCSR425NDU/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR425NDU
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB755XGL
size range: 180-500

source_name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (16.5 days)

value: kidney

value: Kidney pooled from embyonic 16.5 day mice

value: ENCBS519MUD at ENCODE; https://www.encodeproject.org/ENCBS519MUD/


title: ChIP-seq from hindbrain (ENCLB577KNZ)

description:
https://www.encodeproject.org/experiments/ENCSR427ZQB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse hindbrain. NOTE- Files associated with this experiment are undergoing additional review
experiment encode accession: ENCSR427ZQB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR752KDM
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB577KNZ
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (16.5 days)

value: hindbrain

value: Hindbrain from 37 embryonic 16.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS281ZLI at ENCODE; https://www.encodeproject.org/ENCBS281ZLI/


title: ChIP-seq from kidney (ENCLB680RDO)

description:
https://www.encodeproject.org/experiments/ENCSR288OHO/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on postnatal 0 day mouse kidney
experiment encode accession: ENCSR288OHO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR178MLS
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB680RDO
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex postnatal (0 days)

value: tissue

value: Kidney from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS562AAA at ENCODE; https://www.encodeproject.org/ENCBS562AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from kidney (ENCLB802MXC)

description:
https://www.encodeproject.org/experiments/ENCSR425NDU/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR425NDU
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB802MXC
size range: 180-500

value: Kidney from 41 embyonic 16.5 day mice

value: embryonic

value: ENCBS529OHA at ENCODE; https://www.encodeproject.org/ENCBS529OHA/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from neural tube (ENCLB045KBJ)

description:
https://www.encodeproject.org/experiments/ENCSR427OZM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR427OZM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB045KBJ
size range: 300-500

value: neural tube

value: Neural tube from 109 embyronic 11.5 day mice

value: pooled male and female

value: ENCBS402TUS at ENCODE; https://www.encodeproject.org/ENCBS402TUS/


title: WGBS from kidney (ENCLB832HSL)

description:
https://www.encodeproject.org/experiments/ENCSR425NDU/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR425NDU
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB832HSL
size range: 180-500

value: kidney

value: Kidney pooled from embyonic 16.5 day mice

value: healthy

value: ENCBS519MUD at ENCODE; https://www.encodeproject.org/ENCBS519MUD/


title: WGBS from kidney (ENCLB613EEA)

description:
https://www.encodeproject.org/experiments/ENCSR425NDU/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR425NDU
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB613EEA
size range: 180-500

value: tissue

value: Len Pennacchio, LBNL


title: ChIP-seq from stomach (ENCLB904IYN)

description:
https://www.encodeproject.org/experiments/ENCSR288LNF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse stomach
experiment encode accession: ENCSR288LNF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR050VUZ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB904IYN
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex postnatal (0 days)

value: stomach

value: Stomach from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS561AAA at ENCODE; https://www.encodeproject.org/ENCBS561AAA/