title: ChIP-seq from K562 (ENCLB751SOO)

description:
https://www.encodeproject.org/experiments/ENCSR845BCL/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF639 ChIP-seq on human K562
experiment encode accession: ENCSR845BCL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121MVZ
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB751SOO
size range: 200-800

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF639 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF639

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS215BGQ at ENCODE; https://www.encodeproject.org/ENCBS215BGQ/

value: ENCODE dbxrefs Cellosaurus CVCL_HA06; http://web.expasy.org/cellosaurus/CVCL_HA06


title: ChIP-seq from omental fat pad (ENCLB343PHD)

status: Public on Oct 24 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR875UDE/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Wed Aug 24 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR875UDE
assay title: ChIP-seq
encode release date: 2016-11-09
lab: Richard Myers, HAIB
library encode accession: ENCLB343PHD

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens omental fat pad tissue male adult (37 years)

extract_protocol: extraction method: see document

tag: antibody

value: Control

value: omental fat pad

value: tissue

tag: biosample encode accession

tag: Sex

value: male

tag: lab

value: Richard Myers, HAIB

tag: age

value: 37 year

tag: dev stage

value: adult

tag: link

value: ENCBS822PPS at ENCODE; https://www.encodeproject.org/ENCBS822PPS/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from vagina (ENCLB809WHU)

description:
https://www.encodeproject.org/experiments/ENCSR877SNO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on vagina
experiment encode accession: ENCSR877SNO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR466CAA
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB809WHU

source_name: Homo sapiens vagina tissue female adult (53 years)

value: vagina

value: female

value: ENCBS698MLA at ENCODE; https://www.encodeproject.org/ENCBS698MLA/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/4f67ef38-4ded-41cb-b456-56c2bc46dc9d/@@download/attachment/83378.svs


title: ChIP-seq from breast epithelium (ENCLB657GAR)

description:
https://www.encodeproject.org/experiments/ENCSR869JUM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Fri Nov 11 2016 00:00:00 GMT-0600 (CST)
experiment encode accession: ENCSR869JUM
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB657GAR

source_name: Homo sapiens breast epithelium tissue female adult (51 year)

value: breast epithelium

value: 51 year

value: ENCBS605KKW at ENCODE; https://www.encodeproject.org/ENCBS605KKW/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/4c46760c-02dc-44f9-9cfd-998541ed88be/@@download/attachment/84271.svs


title: ChIP-seq from omental fat pad (ENCLB087BQY)

description:
https://www.encodeproject.org/experiments/ENCSR779NON/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on adipose tissue of omentum
experiment encode accession: ENCSR779NON
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR088FBX
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB087BQY

source_name: Homo sapiens omental fat pad tissue female adult (51 year)

value: omental fat pad

value: tissue

value: ENCBS731YFH at ENCODE; https://www.encodeproject.org/ENCBS731YFH/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/ca36e48a-350e-471d-a2fb-155eeb61054b/@@download/attachment/84257.svs


title: ChIP-seq from K562 (ENCLB638KGJ)

description:
https://www.encodeproject.org/experiments/ENCSR740NPG/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-BACH1 ChIP-seq on human K562
experiment encode accession: ENCSR740NPG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR969FPP
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB638KGJ
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-BACH1 fusion protein

extract_protocol: not provided

tag: line

value: immortalized cell line

tag: description

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to BACH1

value: Kevin White, UChicago

tag: passage number

tag: health state

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS083LQN at ENCODE; https://www.encodeproject.org/ENCBS083LQN/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW14; http://web.expasy.org/cellosaurus/CVCL_AW14


title: ChIP-seq from K562 (ENCLB200MVP)

description:
https://www.encodeproject.org/experiments/ENCSR966DOU/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq in K562
experiment encode accession: ENCSR966DOU
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB200MVP
size range: 200-400

source_name: Homo sapiens K562 immortalized cell line

value: Control

value: Control ChIP-seq on K562 cells

value: female

value: Xiang-Dong Fu, UCSD

value: ENCBS426CWP at ENCODE; https://www.encodeproject.org/ENCBS426CWP/


title: ChIP-seq from K562 (ENCLB399ADI)

description:
https://www.encodeproject.org/experiments/ENCSR966DOU/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq in K562
experiment encode accession: ENCSR966DOU
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB399ADI
size range: 200-400

value: ENCBS918UWM at ENCODE; https://www.encodeproject.org/ENCBS918UWM/


title: ChIP-seq from K562 (ENCLB389JVD)

description:
https://www.encodeproject.org/experiments/ENCSR869IUD/
***************
biological replicate number: 2
technical replicate number: 1
description: ATF2 ChIP-seq on human K562
experiment encode accession: ENCSR869IUD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB389JVD
size range: 450-650

value: Michael Snyder, Stanford

value: ENCBS850QNJ at ENCODE; https://www.encodeproject.org/ENCBS850QNJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB336JCV)

description:
https://www.encodeproject.org/experiments/ENCSR869IUD/
***************
biological replicate number: 1
technical replicate number: 1
description: ATF2 ChIP-seq on human K562
experiment encode accession: ENCSR869IUD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB336JCV
size range: 450-650

value: immortalized cell line

value: ENCBS697XFI at ENCODE; https://www.encodeproject.org/ENCBS697XFI/


title: ChIP-seq from MCF-7 (ENCLB572TTZ)

description:
https://www.encodeproject.org/experiments/ENCSR965XFJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-CEBPG tagged MCF7 cell line.
experiment encode accession: ENCSR965XFJ
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB572TTZ
size range: 200-800

source_name: Homo sapiens MCF-7 immortalized cell line stably expressing C-terminal eGFP-CEBPG fusion protein

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to CEBPG

value: Kevin White, UChicago

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS467NVT at ENCODE; https://www.encodeproject.org/ENCBS467NVT/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_HA11; http://web.expasy.org/cellosaurus/CVCL_HA11


title: ChIP-seq from K562 (ENCLB202XBO)

description:
https://www.encodeproject.org/experiments/ENCSR740NPG/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-BACH1 ChIP-seq on human K562
experiment encode accession: ENCSR740NPG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR969FPP
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB202XBO
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to BACH1

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS746PBJ at ENCODE; https://www.encodeproject.org/ENCBS746PBJ/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW14; http://web.expasy.org/cellosaurus/CVCL_AW14


title: hsGAL4_UAS-InRCA_withHS_1

city: Binghamton

first: Laura

middle: Palanker

last: Musselman

state: New York

address: 4400 Vestal Parkway East

department: Biological Sciences

institute: Binghamton University

description:
Bloomington's UAS-InR.A1325D (#8263) stock crossed with a hs-GAL4 stock, heat shocked 6 hours prior to harvest
InRCA_w_hs1

library_source: transcriptomic

data_processing:
To produce bed alignments, sequenced reads were aligned to the D. melanogaster UCSC dm3 assembly using Tophat (v1.3.2) and Bowtie (v0.12.7). Default Tophat settings were used.
Gene expression was quantified by processing the Tophat produced bam alignments with Cufflinks (v1.1.0) and the modENCODE dm3 annotation.
Expression was normalized by applying upper-quartile normalization as defined in "Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments", Bullard et al. BMC Bioinformatics. 2010; 11: 94
Genome_build: dm3
Supplementary_files_format_and_content: Excel worksheet "GEO processed data for InRCA" containing normalized RPKM for each raw dataset, indexed by gene Accession (CG number)

molecule: total RNA

organism: Drosophila melanogaster

source_name: fat body

growth_protocol: Males (Bloomington's 6598 or 8263 stocks) were crossed to hs-GAL4 driver line virgin females to produce offspring that could express constitutively active InR in a heat-dependent manner.

extract_protocol:
Fat bodies were homogenized in Trizol and total RNA isolated after DNAse digestion.
RiboZero subtraction was used to remove rRNA and then reverse transcription, size exclusion, amplification, and bar coding produced the final library.
Reads using bar-coded cDNA were generated by Illumina Hi-Seq analyzer.

treatment_protocol: Larvae were reared on control lab food until reaching mid-third instar stage, then heat shocked or mock heat shocked (transfer to a new vial but no heat) at 37C for 30 minutes. Fat bodies were isolated after a 6 hour recovery by shearing and separation by centrifugation.

tag: developmental stage

value: feeding mid-third instar larva

tag: tissue

value: fat body


title: ChIP-seq from HEK293T (ENCLB677GAI)

description:
https://www.encodeproject.org/experiments/ENCSR778QLY/
***************
biological replicate number: 1
technical replicate number: 1
description: ELF4 ChIP-seq on human HEK293T
experiment encode accession: ENCSR778QLY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR386FAB
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB677GAI
size range: 450-650

source_name: Homo sapiens HEK293T immortalized cell line

value: immortalized cell line

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS276VDW at ENCODE; https://www.encodeproject.org/ENCBS276VDW/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HepG2 (ENCLB478EJM)

description:
https://www.encodeproject.org/experiments/ENCSR735QJO/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR735QJO
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB478EJM
size range: 200-400

source_name: Homo sapiens HepG2 immortalized cell line

value: Control

value: Control ChIP-seq on HepG2 cells

value: male

value: Xiang-Dong Fu, UCSD

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS273MKT at ENCODE; https://www.encodeproject.org/ENCBS273MKT/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB857CNO)

description:
https://www.encodeproject.org/experiments/ENCSR735QJO/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR735QJO
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB857CNO
size range: 200-400

value: ENCBS122WEH at ENCODE; https://www.encodeproject.org/ENCBS122WEH/


title: ChIP-seq from liver (ENCLB956RVH)

description:
https://www.encodeproject.org/experiments/ENCSR867WPH/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on REST-human
experiment encode accession: ENCSR867WPH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR621CSR, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB956RVH

source_name: Homo sapiens liver tissue male adult (32 years)

value: REST

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from 22Rv1 (ENCLB989TCG)

description:
https://www.encodeproject.org/experiments/ENCSR777CQW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on human 22Rv1
experiment encode accession: ENCSR777CQW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR933UGQ
encode release date: 2017-03-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB989TCG
size range: 450-650

source_name: Homo sapiens 22Rv1 immortalized cell line treated with 10 nM 17beta-hydroxy-5alpha-androstan-3-one for 4 hours

value: immortalized cell line

value: not collected

value: Michael Snyder, Stanford

value: carcinoma (prostate)

value: unknown

tag: treatments

value: treatment_term_id:CHEBI:16330; treatment_term_name:17beta-hydroxy-5alpha-androstan-3-one; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS626QQL at ENCODE; https://www.encodeproject.org/ENCBS626QQL/

value: derived from ENCODE donor ENCDO719HIY; https://www.encodeproject.org/ENCDO719HIY/


title: ChIP-seq from HEK293T (ENCLB772CWX)

description:
https://www.encodeproject.org/experiments/ENCSR778QLY/
***************
biological replicate number: 2
technical replicate number: 1
description: ELF4 ChIP-seq on human HEK293T
experiment encode accession: ENCSR778QLY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR386FAB
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB772CWX
size range: 450-650

value: embryonic

value: female

value: ENCBS582KZL at ENCODE; https://www.encodeproject.org/ENCBS582KZL/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB445GBP)

description:
https://www.encodeproject.org/experiments/ENCSR948KMB/
***************
biological replicate number: 2
technical replicate number: 1
description: PTBP1 ChIP-seq in K562
experiment encode accession: ENCSR948KMB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR932KYH
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB445GBP
size range: 200-400

value: PTBP1 ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS127DTE at ENCODE; https://www.encodeproject.org/ENCBS127DTE/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB807UGP)

description:
https://www.encodeproject.org/experiments/ENCSR948KMB/
***************
biological replicate number: 1
technical replicate number: 1
description: PTBP1 ChIP-seq in K562
experiment encode accession: ENCSR948KMB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR932KYH
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB807UGP
size range: 200-400

value: immortalized cell line

value: ENCBS638TGE at ENCODE; https://www.encodeproject.org/ENCBS638TGE/


title: ChIP-seq from HepG2 (ENCLB337JGZ)

description:
https://www.encodeproject.org/experiments/ENCSR867VPL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR867VPL
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB337JGZ
size range: 200-400

value: Control

value: Control ChIP-seq on HepG2 cells

value: male

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS869WAH at ENCODE; https://www.encodeproject.org/ENCBS869WAH/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: Hi-C from SK-N-MC (ENCLB215KZO)

description:
https://www.encodeproject.org/experiments/ENCSR834DXR/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on SK-N-MC
experiment encode accession: ENCSR834DXR
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB215KZO

source_name: Homo sapiens SK-N-MC immortalized cell line

value: SK-N-MC

value: Please note:This cell line was previously described as a neuroepithelioma (ATCC HTB-10).  However recent evidence reveals it is Ewing's Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999,http://www.ncbi.nlm.nih.gov/pubmed/25453903)

value: female

value: John Stamatoyannopoulos, UW

value: Ewing's sarcoma

value: 14 year

value: ENCBS366AET at ENCODE; https://www.encodeproject.org/ENCBS366AET/

value: derived from ENCODE donor ENCDO000ABC; https://www.encodeproject.org/ENCDO000ABC/

value: ENCODE dbxrefs Cellosaurus CVCL_0530; http://web.expasy.org/cellosaurus/CVCL_0530

value: ENCODE dbxrefs SK-N-MC; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=SK-N-MC


title: ChIP-seq from HepG2 (ENCLB100TZA)

description:
https://www.encodeproject.org/experiments/ENCSR867VPL/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR867VPL
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB100TZA
size range: 200-400

value: Control

value: immortalized cell line

value: Control ChIP-seq on HepG2 cells

value: Xiang-Dong Fu, UCSD

value: ENCBS437FDB at ENCODE; https://www.encodeproject.org/ENCBS437FDB/


title: ChIP-seq from K562 (ENCLB834BNF)

description:
https://www.encodeproject.org/experiments/ENCSR729HVR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF644 ChIP-seq on human K562
experiment encode accession: ENCSR729HVR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR911VTL
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB834BNF
size range: 200-800

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF644 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF644

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS885SBO at ENCODE; https://www.encodeproject.org/ENCBS885SBO/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_HA07; http://web.expasy.org/cellosaurus/CVCL_HA07


title: ChIP-seq from K562 (ENCLB755WZK)

description:
https://www.encodeproject.org/experiments/ENCSR829NNQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ZNF766 tagged K562 cell line.
experiment encode accession: ENCSR829NNQ
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB755WZK
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF766 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF766

value: female

value: ENCBS570ZDR at ENCODE; https://www.encodeproject.org/ENCBS570ZDR/

value: ENCODE dbxrefs Cellosaurus CVCL_HA09; http://web.expasy.org/cellosaurus/CVCL_HA09


title: ChIP-seq from K562 (ENCLB609FIR)

description:
https://www.encodeproject.org/experiments/ENCSR932KYH/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq in K562
experiment encode accession: ENCSR932KYH
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB609FIR
size range: 200-400

value: Control

value: Control ChIP-seq on K562 cells

value: ENCBS094YFT at ENCODE; https://www.encodeproject.org/ENCBS094YFT/


title: ChIP-seq from K562 (ENCLB082BKM)

description:
https://www.encodeproject.org/experiments/ENCSR845BCL/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF639 ChIP-seq on human K562
experiment encode accession: ENCSR845BCL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121MVZ
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB082BKM
size range: 200-800

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF639

value: ENCBS967JDE at ENCODE; https://www.encodeproject.org/ENCBS967JDE/

value: ENCODE dbxrefs Cellosaurus CVCL_HA06; http://web.expasy.org/cellosaurus/CVCL_HA06


title: ChIP-seq from MCF-7 (ENCLB236MYS)

description:
https://www.encodeproject.org/experiments/ENCSR866QPZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ATF7 ChIP-seq on human MCF-7
experiment encode accession: ENCSR866QPZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB236MYS
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: 69 year

value: breast cancer (adenocarcinoma)

value: Michael Snyder, Stanford

value: ENCBS200IWR at ENCODE; https://www.encodeproject.org/ENCBS200IWR/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from MCF-7 (ENCLB184RSR)

description:
https://www.encodeproject.org/experiments/ENCSR931XKA/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-KLF9 tagged MCF7 cell line.
experiment encode accession: ENCSR931XKA
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB184RSR
size range: 200-800

source_name: Homo sapiens MCF-7 immortalized cell line stably expressing C-terminal eGFP-KLF9 fusion protein

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to KLF9

value: Kevin White, UChicago

value: adult

value: ENCBS183KOB at ENCODE; https://www.encodeproject.org/ENCBS183KOB/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_HA18; http://web.expasy.org/cellosaurus/CVCL_HA18


title: ChIP-seq from K562 (ENCLB705UIX)

description:
https://www.encodeproject.org/experiments/ENCSR729HVR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF644 ChIP-seq on human K562
experiment encode accession: ENCSR729HVR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR911VTL
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB705UIX
size range: 200-800

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF644

value: female

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS923DEI at ENCODE; https://www.encodeproject.org/ENCBS923DEI/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_HA07; http://web.expasy.org/cellosaurus/CVCL_HA07


title: ChIP-seq from MCF-7 (ENCLB946TFG)

description:
https://www.encodeproject.org/experiments/ENCSR866QPZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATF7 ChIP-seq on human MCF-7
experiment encode accession: ENCSR866QPZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB946TFG
size range: 450-650

value: immortalized cell line

value: 69 year

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS547AXB at ENCODE; https://www.encodeproject.org/ENCBS547AXB/


title: ChIP-seq from HEK293 (ENCLB307AAG)

description:
https://www.encodeproject.org/experiments/ENCSR776LDJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF645 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR776LDJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB307AAG
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF645 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF645 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS790DZT at ENCODE; https://www.encodeproject.org/ENCBS790DZT/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: Hi-C from RPMI-7951 (ENCLB016TGU)

description:
https://www.encodeproject.org/experiments/ENCSR862OGI/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on RPMI-7951
experiment encode accession: ENCSR862OGI
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB016TGU

source_name: Homo sapiens RPMI-7951 immortalized cell line

value: 18 year

value: adult

value: malignant melanoma

value: John Stamatoyannopoulos, UW

value: ENCBS493TPA at ENCODE; https://www.encodeproject.org/ENCBS493TPA/

value: Derived from ENCODE donor ENCDO000ADL; https://www.encodeproject.org/ENCDO000ADL/

value: ENCODE dbxrefs Cellosaurus CVCL_1666; http://web.expasy.org/cellosaurus/CVCL_1666


title: ChIP-seq from MCF-7 (ENCLB593JAA)

description:
https://www.encodeproject.org/experiments/ENCSR907JTZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-FOSL2 tagged MCF7 cell line.
experiment encode accession: ENCSR907JTZ
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB593JAA
size range: 200-800

source_name: Homo sapiens MCF-7 immortalized cell line stably expressing C-terminal eGFP-FOSL2 fusion protein

value: Control

value: immortalized cell line

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to FOSL2

value: female

value: Kevin White, UChicago

value: ENCBS071FIF at ENCODE; https://www.encodeproject.org/ENCBS071FIF/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_HA15; http://web.expasy.org/cellosaurus/CVCL_HA15


title: ChIP-seq from HEK293 (ENCLB100FTS)

description:
https://www.encodeproject.org/experiments/ENCSR776LDJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF645 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR776LDJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB100FTS
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF645 under the control of a CMV promoter.

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS493NNI at ENCODE; https://www.encodeproject.org/ENCBS493NNI/


title: ChIP-seq from 22Rv1 (ENCLB707NFY)

description:
https://www.encodeproject.org/experiments/ENCSR777CQW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on human 22Rv1
experiment encode accession: ENCSR777CQW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR933UGQ
encode release date: 2017-03-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB707NFY
size range: 450-650

value: not collected

value: carcinoma (prostate)

value: treatment_term_id:CHEBI:16330; treatment_term_name:17beta-hydroxy-5alpha-androstan-3-one; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS070BKF at ENCODE; https://www.encodeproject.org/ENCBS070BKF/

value: derived from ENCODE donor ENCDO719HIY; https://www.encodeproject.org/ENCDO719HIY/


title: Hi-C from RPMI-7951 (ENCLB210AAY)

description:
https://www.encodeproject.org/experiments/ENCSR862OGI/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on RPMI-7951
experiment encode accession: ENCSR862OGI
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB210AAY

value: immortalized cell line

value: Human Skin Malignant Melanoma Cells, This is a hyperdiploid human cell line with the modal chromosome number of 49, occurring in 24% of cells. Polyploid cells occurred at 22%, which is high.

value: 18 year

value: adult

value: malignant melanoma

value: John Stamatoyannopoulos, UW

value: ENCBS262AAA at ENCODE; https://www.encodeproject.org/ENCBS262AAA/

value: Derived from ENCODE donor ENCDO000ADL; https://www.encodeproject.org/ENCDO000ADL/

value: ENCODE dbxrefs Cellosaurus CVCL_1666; http://web.expasy.org/cellosaurus/CVCL_1666

value: ENCODE dbxrefs RPMI-7951; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=RPMI-7951


title: ChIP-seq from K562 (ENCLB924PQQ)

description:
https://www.encodeproject.org/experiments/ENCSR911VTL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ZNF644 tagged K562 cell line.
experiment encode accession: ENCSR911VTL
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB924PQQ
size range: 200-800

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF644

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS204XMM at ENCODE; https://www.encodeproject.org/ENCBS204XMM/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_HA07; http://web.expasy.org/cellosaurus/CVCL_HA07


title: ChIP-seq from stomach (ENCLB981KYU)

description:
https://www.encodeproject.org/experiments/ENCSR864PNP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Tue Aug 30 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR864PNP
assay title: ChIP-seq
encode release date: 2016-11-09
lab: Richard Myers, HAIB
library encode accession: ENCLB981KYU

source_name: Homo sapiens stomach tissue female adult (51 year)

value: stomach

value: tissue

value: Richard Myers, HAIB

value: 51 year

value: ENCBS066DAE at ENCODE; https://www.encodeproject.org/ENCBS066DAE/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/30eab777-0f1f-4412-807d-a20ab5c6589d/@@download/attachment/84279.svs


title: ChIP-seq from liver (ENCLB630CLJ)

description:
https://www.encodeproject.org/experiments/ENCSR867WPH/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on REST-human
experiment encode accession: ENCSR867WPH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR621CSR, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB630CLJ

value: REST

value: liver

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from K562 (ENCLB262NKS)

description:
https://www.encodeproject.org/experiments/ENCSR814CUB/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ZBTB11 tagged K562 cell line.
experiment encode accession: ENCSR814CUB
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB262NKS
size range: 200-800

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZBTB11 fusion protein

value: Control

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZBTB11

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS075MLD at ENCODE; https://www.encodeproject.org/ENCBS075MLD/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ96; http://web.expasy.org/cellosaurus/CVCL_GZ96


title: ChIP-seq from stomach (ENCLB861JIN)

description:
https://www.encodeproject.org/experiments/ENCSR776AEL/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human stomach
experiment encode accession: ENCSR776AEL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR488BXS
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB861JIN
size range: 450-650

source_name: Homo sapiens stomach tissue female adult (53 years)

value: CTCF

value: stomach

value: tissue

value: Michael Snyder, Stanford

value: adult

value: ENCBS296KUN at ENCODE; https://www.encodeproject.org/ENCBS296KUN/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from K562 (ENCLB311WZV)

description:
https://www.encodeproject.org/experiments/ENCSR706BJO/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZBTB11 ChIP-seq on human K562
experiment encode accession: ENCSR706BJO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR814CUB
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB311WZV
size range: 200-800

value: ENCBS170SCN at ENCODE; https://www.encodeproject.org/ENCBS170SCN/


title: ChIP-seq from esophagus muscularis mucosa (ENCLB851FLN)

description:
https://www.encodeproject.org/experiments/ENCSR862NOW/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on muscle layer of esophagus
experiment encode accession: ENCSR862NOW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR452KMJ
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB851FLN

source_name: Homo sapiens esophagus muscularis mucosa tissue male adult (54 years)

value: esophagus muscularis mucosa

value: male

value: Richard Myers, HAIB

value: 54 year

value: ENCBS735VKK at ENCODE; https://www.encodeproject.org/ENCBS735VKK/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/81de566a-87a0-4f4d-8614-0767dcb0766c/@@download/attachment/82353.svs


title: Hi-C from SJCRH30 (ENCLB821TDJ)

description:
https://www.encodeproject.org/experiments/ENCSR998ZSP/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on SJCRH30
experiment encode accession: ENCSR998ZSP
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB821TDJ

source_name: Homo sapiens SJCRH30 immortalized cell line

value: immortalized cell line

value: This immortalized cell line was established from cells from the metastatic site of the bone marrow of a child with rhabdomyosarcoma

value: 17 year

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS516AAA at ENCODE; https://www.encodeproject.org/ENCBS516AAA/

value: Derived from ENCODE donor ENCDO339AAA; https://www.encodeproject.org/ENCDO339AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0041; http://web.expasy.org/cellosaurus/CVCL_0041


title: ChIP-seq from K562 (ENCLB262CVK)

description:
https://www.encodeproject.org/experiments/ENCSR706BJO/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZBTB11 ChIP-seq on human K562
experiment encode accession: ENCSR706BJO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR814CUB
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB262CVK
size range: 200-800

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZBTB11

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS991MRU at ENCODE; https://www.encodeproject.org/ENCBS991MRU/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ96; http://web.expasy.org/cellosaurus/CVCL_GZ96


title: ChIP-seq from stomach (ENCLB306BQF)

description:
https://www.encodeproject.org/experiments/ENCSR775VUA/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human stomach
experiment encode accession: ENCSR775VUA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR394BOP
encode release date: 2016-07-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB306BQF
size range: 450-650

source_name: Homo sapiens stomach tissue male adult (37 years)

value: stomach

value: tissue

value: male

value: Michael Snyder, Stanford

value: 37 year

value: ENCBS962HLD at ENCODE; https://www.encodeproject.org/ENCBS962HLD/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HEK293 (ENCLB840LZD)

description:
https://www.encodeproject.org/experiments/ENCSR775HFF/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF791 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR775HFF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB840LZD
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF791 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF791 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS550ALC at ENCODE; https://www.encodeproject.org/ENCBS550ALC/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from breast epithelium (ENCLB750JWV)

description:
https://www.encodeproject.org/experiments/ENCSR774ONS/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Fri Nov 11 2016 00:00:00 GMT-0600 (CST)
experiment encode accession: ENCSR774ONS
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB750JWV

source_name: Homo sapiens breast epithelium tissue male adult (37 years)

value: Control

value: breast epithelium

value: Richard Myers, HAIB

value: adult

value: ENCBS166EJL at ENCODE; https://www.encodeproject.org/ENCBS166EJL/


title: ChIP-seq from HEK293 (ENCLB669YBA)

description:
https://www.encodeproject.org/experiments/ENCSR775HFF/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF791 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR775HFF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB669YBA
size range: 450-650

value: female

value: ENCBS335ETQ at ENCODE; https://www.encodeproject.org/ENCBS335ETQ/


title: ChIP-seq from HepG2 (ENCLB705TVR)

description:
https://www.encodeproject.org/experiments/ENCSR859JGF/
***************
biological replicate number: 1
technical replicate number: 1
description: ATM ChIP-seq on human HepG2
experiment encode accession: ENCSR859JGF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV, ENCSR770GTP
encode release date: 2017-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB705TVR
size range: 450-650

source_name: Homo sapiens HepG2 immortalized cell line

value: ATM

value: child

value: 15 year

value: male

value: Michael Snyder, Stanford

value: hepatocellular carcinoma

value: ENCBS731WFK at ENCODE; https://www.encodeproject.org/ENCBS731WFK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HepG2 (ENCLB787CUA)

description:
https://www.encodeproject.org/experiments/ENCSR859JGF/
***************
biological replicate number: 2
technical replicate number: 1
description: ATM ChIP-seq on human HepG2
experiment encode accession: ENCSR859JGF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV, ENCSR770GTP
encode release date: 2017-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB787CUA
size range: 450-650

value: immortalized cell line

value: Hepatocellular carcinoma

value: ENCBS716YFX at ENCODE; https://www.encodeproject.org/ENCBS716YFX/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from transverse colon (ENCLB020WHN)

description:
https://www.encodeproject.org/experiments/ENCSR769WKR/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human transverse colon
experiment encode accession: ENCSR769WKR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR567EKU
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB020WHN
size range: 450-650

source_name: Homo sapiens transverse colon tissue female adult (53 years)

value: CTCF

value: transverse colon

value: tissue

value: 53 year

value: adult

value: ENCBS659AMF at ENCODE; https://www.encodeproject.org/ENCBS659AMF/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from suprapubic skin (ENCLB122NJW)

description:
https://www.encodeproject.org/experiments/ENCSR773QRB/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on suprapubic skin
experiment encode accession: ENCSR773QRB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR225UUX
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB122NJW

source_name: Homo sapiens suprapubic skin tissue male adult (54 years)

value: suprapubic skin

value: male

value: Richard Myers, HAIB

value: 54 year

value: ENCBS471QWL at ENCODE; https://www.encodeproject.org/ENCBS471QWL/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/f5435929-2851-47b5-adeb-b58261a3b1e7/@@download/attachment/82377.svs


title: ChIP-seq from HEK293 (ENCLB006IHQ)

description:
https://www.encodeproject.org/experiments/ENCSR762DQP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF658 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR762DQP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB006IHQ
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF658 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF658 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS496WJT at ENCODE; https://www.encodeproject.org/ENCBS496WJT/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from spleen (ENCLB515SWJ)

description:
https://www.encodeproject.org/experiments/ENCSR895OZW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human spleen
experiment encode accession: ENCSR895OZW
assay title: ChIP-seq
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB515SWJ
size range: 450-650

source_name: Homo sapiens spleen tissue male adult (37 years)

value: Control

value: spleen

value: tissue

value: 37 year

value: adult

value: ENCBS148ECB at ENCODE; https://www.encodeproject.org/ENCBS148ECB/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from subcutaneous adipose tissue (ENCLB911MAM)

description:
https://www.encodeproject.org/experiments/ENCSR762PCG/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human adipose tissue
experiment encode accession: ENCSR762PCG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR078CBW
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB911MAM
size range: 450-650

source_name: Homo sapiens subcutaneous adipose tissue female adult (53 years)

value: CTCF

value: subcutaneous adipose tissue

value: 53 year

value: ENCBS108OCK at ENCODE; https://www.encodeproject.org/ENCBS108OCK/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: Hi-C from endothelial cell of hepatic sinusoid (ENCLB618NVM)

description:
https://www.encodeproject.org/experiments/ENCSR982KWR/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on endothelial cell of hepatic sinusoid
experiment encode accession: ENCSR982KWR
assay title: Hi-C
assembly: hg19
encode release date: 2017-05-26
lab: Job Dekker, UMass
library encode accession: ENCLB618NVM

source_name: Homo sapiens endothelial of hepatic sinusoid primary cell

value: endothelial cell of hepatic sinusoid

value: primary cell

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS064WBQ at ENCODE; https://www.encodeproject.org/ENCBS064WBQ/

value: derived from ENCODE donor ENCDO217XZO; https://www.encodeproject.org/ENCDO217XZO/


title: ChIP-seq from ascending aorta (ENCLB165TOA)

description:
https://www.encodeproject.org/experiments/ENCSR894EKG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human ascending aorta
experiment encode accession: ENCSR894EKG
assay title: ChIP-seq
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB165TOA
size range: 450-650

source_name: Homo sapiens ascending aorta tissue female adult (51 year)

value: Control

value: ascending aorta

value: female

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS232BOV at ENCODE; https://www.encodeproject.org/ENCBS232BOV/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Hi-C from endothelial cell of hepatic sinusoid (ENCLB284TIY)

description:
https://www.encodeproject.org/experiments/ENCSR982KWR/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on endothelial cell of hepatic sinusoid
experiment encode accession: ENCSR982KWR
assay title: Hi-C
assembly: hg19
encode release date: 2017-05-26
lab: Job Dekker, UMass
library encode accession: ENCLB284TIY

value: unknown

value: ENCBS395DQZ at ENCODE; https://www.encodeproject.org/ENCBS395DQZ/


title: ChIP-seq from HEK293 (ENCLB151WGR)

description:
https://www.encodeproject.org/experiments/ENCSR762DQP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF658 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR762DQP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB151WGR
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF658 under the control of a CMV promoter.

value: embryonic

value: ENCBS586MKT at ENCODE; https://www.encodeproject.org/ENCBS586MKT/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HepG2 (ENCLB757YPJ)

description:
https://www.encodeproject.org/experiments/ENCSR894SXR/
***************
biological replicate number: 1
technical replicate number: 1
description: TCF12 ChIP-seq on human HepG2
experiment encode accession: ENCSR894SXR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR399VVK
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB757YPJ
size range: 450-650

value: male

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS425BJH at ENCODE; https://www.encodeproject.org/ENCBS425BJH/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from subcutaneous adipose tissue (ENCLB059XKK)

description:
https://www.encodeproject.org/experiments/ENCSR983SZL/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on adipose tissue
experiment encode accession: ENCSR983SZL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956TLA
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB059XKK

source_name: Homo sapiens subcutaneous adipose tissue female adult (51 year)

value: subcutaneous adipose tissue

value: tissue

value: female

value: Richard Myers, HAIB

value: adult

value: ENCBS583NII at ENCODE; https://www.encodeproject.org/ENCBS583NII/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/45ff1f4b-b3ee-4da5-835b-e8b83ec49932/@@download/attachment/84283.svs


title: ChIP-seq from transverse colon (ENCLB019TTF)

description:
https://www.encodeproject.org/experiments/ENCSR799YAO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human transverse colon
experiment encode accession: ENCSR799YAO
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB019TTF
size range: 450-650

source_name: Homo sapiens transverse colon tissue male adult (54 years)

value: Control

value: transverse colon

value: Michael Snyder, Stanford

value: 54 year

value: ENCBS866IBT at ENCODE; https://www.encodeproject.org/ENCBS866IBT/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from HepG2 (ENCLB558LXW)

description:
https://www.encodeproject.org/experiments/ENCSR894SXR/
***************
biological replicate number: 2
technical replicate number: 1
description: TCF12 ChIP-seq on human HepG2
experiment encode accession: ENCSR894SXR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR399VVK
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB558LXW
size range: 450-650

value: immortalized cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: ENCBS935XAF at ENCODE; https://www.encodeproject.org/ENCBS935XAF/


title: ChIP-seq from MCF-7 (ENCLB673ZRS)

description:
https://www.encodeproject.org/experiments/ENCSR761LRR/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF512B ChIP-seq on human MCF-7
experiment encode accession: ENCSR761LRR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB673ZRS
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS973EAA at ENCODE; https://www.encodeproject.org/ENCBS973EAA/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from transverse colon (ENCLB665QGV)

description:
https://www.encodeproject.org/experiments/ENCSR761RDB/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on transverse colon
experiment encode accession: ENCSR761RDB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR717TBA
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB665QGV

value: tissue

value: female

value: Richard Myers, HAIB

value: 53 year

value: adult

value: ENCBS022PBN at ENCODE; https://www.encodeproject.org/ENCBS022PBN/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/01a2c769-a3d7-421f-8905-77082e5a5a7a/@@download/attachment/83389.svs


title: ChIP-seq from MCF-7 (ENCLB716EHM)

description:
https://www.encodeproject.org/experiments/ENCSR761LRR/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF512B ChIP-seq on human MCF-7
experiment encode accession: ENCSR761LRR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB716EHM
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: ENCBS295JCF at ENCODE; https://www.encodeproject.org/ENCBS295JCF/


title: ChIP-seq from subcutaneous adipose tissue (ENCLB697UTD)

description:
https://www.encodeproject.org/experiments/ENCSR980OPB/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on adipose tissue
experiment encode accession: ENCSR980OPB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR009SHE
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB697UTD

source_name: Homo sapiens subcutaneous adipose tissue male adult (54 years)

value: subcutaneous adipose tissue

value: male

value: 54 year

value: ENCBS647IID at ENCODE; https://www.encodeproject.org/ENCBS647IID/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/8b93465d-d67d-4e4f-8142-0b05e2b14a95/@@download/attachment/82372.svs


title: ChIP-seq from 22Rv1 (ENCLB947RFP)

description:
https://www.encodeproject.org/experiments/ENCSR857PBV/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on human 22Rv1
experiment encode accession: ENCSR857PBV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR933UGQ
encode release date: 2017-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB947RFP
size range: 450-650

source_name: Homo sapiens 22Rv1 immortalized cell line

value: CTCF

value: not collected

value: carcinoma (prostate)

value: unknown

value: ENCBS822DIG at ENCODE; https://www.encodeproject.org/ENCBS822DIG/

value: derived from ENCODE donor ENCDO719HIY; https://www.encodeproject.org/ENCDO719HIY/


title: ChIP-seq from 22Rv1 (ENCLB407QHY)

description:
https://www.encodeproject.org/experiments/ENCSR857PBV/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human 22Rv1
experiment encode accession: ENCSR857PBV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR933UGQ
encode release date: 2017-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB407QHY
size range: 450-650

value: ENCBS737IZN at ENCODE; https://www.encodeproject.org/ENCBS737IZN/


title: ChIP-seq from K562 (ENCLB642HDH)

description:
https://www.encodeproject.org/experiments/ENCSR796ITY/
***************
biological replicate number: 2
technical replicate number: 1
description: NFIC ChIP-seq on human K562
experiment encode accession: ENCSR796ITY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR632PAG
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB642HDH
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: NFIC

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS357NWO at ENCODE; https://www.encodeproject.org/ENCBS357NWO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from Peyer's patch (ENCLB529JMY)

description:
https://www.encodeproject.org/experiments/ENCSR799WDT/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human Peyer's patch
experiment encode accession: ENCSR799WDT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR921JFJ
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB529JMY
size range: 450-650

source_name: Homo sapiens Peyer's patch tissue male adult (54 years)

value: Peyer's patch

value: tissue

value: male

value: Michael Snyder, Stanford

value: 54 year

value: ENCBS404OGY at ENCODE; https://www.encodeproject.org/ENCBS404OGY/


title: ChIP-seq from uterus (ENCLB856BVS)

description:
https://www.encodeproject.org/experiments/ENCSR798NVH/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human uterus
experiment encode accession: ENCSR798NVH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR224COZ
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB856BVS
size range: 450-650

source_name: Homo sapiens uterus tissue female adult (51 year)

value: CTCF

value: uterus

value: 51 year

value: ENCBS867AWW at ENCODE; https://www.encodeproject.org/ENCBS867AWW/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from breast epithelium (ENCLB135QCV)

description:
https://www.encodeproject.org/experiments/ENCSR794WXG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human breast epithelium
experiment encode accession: ENCSR794WXG
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB135QCV
size range: 450-650

source_name: Homo sapiens breast epithelium tissue female adult (51 year)

value: Control

value: breast epithelium

value: adult

value: ENCBS824TRN at ENCODE; https://www.encodeproject.org/ENCBS824TRN/


title: ChIP-seq from MCF-7 (ENCLB872TQR)

description:
https://www.encodeproject.org/experiments/ENCSR757EMK/
***************
biological replicate number: 2
technical replicate number: 1
description: SUZ12 ChIP-seq on human MCF-7
experiment encode accession: ENCSR757EMK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB872TQR
size range: 450-650

value: immortalized cell line

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS200IWR at ENCODE; https://www.encodeproject.org/ENCBS200IWR/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from K562 (ENCLB244LCH)

description:
https://www.encodeproject.org/experiments/ENCSR796ITY/
***************
biological replicate number: 1
technical replicate number: 1
description: NFIC ChIP-seq on human K562
experiment encode accession: ENCSR796ITY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR632PAG
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB244LCH
size range: 450-650

value: NFIC

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS298PAM at ENCODE; https://www.encodeproject.org/ENCBS298PAM/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from right lobe of liver (ENCLB762RUR)

description:
https://www.encodeproject.org/experiments/ENCSR790UYC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human right lobe of liver
experiment encode accession: ENCSR790UYC
assay title: ChIP-seq
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB762RUR
size range: 450-650

source_name: Homo sapiens right lobe of liver tissue female adult (53 years)

value: Control

value: right lobe of liver

value: tissue

value: ENCBS904HZU at ENCODE; https://www.encodeproject.org/ENCBS904HZU/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from MCF-7 (ENCLB552ACZ)

description:
https://www.encodeproject.org/experiments/ENCSR757EMK/
***************
biological replicate number: 1
technical replicate number: 1
description: SUZ12 ChIP-seq on human MCF-7
experiment encode accession: ENCSR757EMK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB552ACZ
size range: 450-650

value: immortalized cell line

value: adult

value: female

value: ENCBS609QTY at ENCODE; https://www.encodeproject.org/ENCBS609QTY/


title: ChIP-seq from K562 (ENCLB222SOQ)

description:
https://www.encodeproject.org/experiments/ENCSR765SXU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-FOXJ2 tagged K562 cell line.
experiment encode accession: ENCSR765SXU
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB222SOQ
size range: 200-800

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-FOXJ2 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to FOXJ2

value: Kevin White, UChicago

value: ENCBS507YTF at ENCODE; https://www.encodeproject.org/ENCBS507YTF/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ85; http://web.expasy.org/cellosaurus/CVCL_GZ85


title: ChIP-seq from K562 (ENCLB827CGI)

description:
https://www.encodeproject.org/experiments/ENCSR754ZHU/
***************
biological replicate number: 2
technical replicate number: 1
description: SNRNP70 ChIP-seq in K562
experiment encode accession: ENCSR754ZHU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR966DOU
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB827CGI
size range: 200-400

value: SNRNP70 ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: ENCBS837LPV at ENCODE; https://www.encodeproject.org/ENCBS837LPV/


title: ChIP-seq from MCF-7 (ENCLB295BIX)

description:
https://www.encodeproject.org/experiments/ENCSR979FQP/
***************
biological replicate number: 1
technical replicate number: 1
description: GATAD2B ChIP-seq on human MCF-7
experiment encode accession: ENCSR979FQP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB295BIX
size range: 450-650

value: 69 year

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS764AUT at ENCODE; https://www.encodeproject.org/ENCBS764AUT/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from HEK293 (ENCLB535VQW)

description:
https://www.encodeproject.org/experiments/ENCSR978EQY/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-GLI2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR978EQY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB535VQW
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-GLI2 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-GLI2 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS073JSB at ENCODE; https://www.encodeproject.org/ENCBS073JSB/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from lower leg skin (ENCLB445TMP)

description:
https://www.encodeproject.org/experiments/ENCSR888HXN/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human lower leg skin
experiment encode accession: ENCSR888HXN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR978LBS
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB445TMP
size range: 450-650

source_name: Homo sapiens lower leg skin tissue female adult (53 years)

value: lower leg skin

value: tissue

value: female

value: 53 year

value: adult

value: ENCBS439RNG at ENCODE; https://www.encodeproject.org/ENCBS439RNG/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from HEK293 (ENCLB932FGA)

description:
https://www.encodeproject.org/experiments/ENCSR978EQY/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-GLI2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR978EQY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB932FGA
size range: 450-650

value: Michael Snyder, Stanford

value: ENCBS298HKS at ENCODE; https://www.encodeproject.org/ENCBS298HKS/


title: ChIP-seq from GM12878 (ENCLB063FHW)

description:
https://www.encodeproject.org/experiments/ENCSR976TBC/
***************
biological replicate number: 1
technical replicate number: 1
description: IRF5 ChIP-seq on human GM12878
experiment encode accession: ENCSR976TBC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2017-02-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB063FHW
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: ENCBS519VWT at ENCODE; https://www.encodeproject.org/ENCBS519VWT/

value: derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: ChIP-seq from suprapubic skin (ENCLB390KJG)

description:
https://www.encodeproject.org/experiments/ENCSR756KRS/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human suprapubic skin
experiment encode accession: ENCSR756KRS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR827FNU
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB390KJG
size range: 450-650

source_name: Homo sapiens suprapubic skin tissue female adult (51 year)

value: CTCF

value: suprapubic skin

value: 51 year

value: ENCBS351RRY at ENCODE; https://www.encodeproject.org/ENCBS351RRY/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from HepG2 (ENCLB713CKP)

description:
https://www.encodeproject.org/experiments/ENCSR887LYD/
***************
biological replicate number: 1
technical replicate number: 1
description: SMARCC2 ChIP-seq on human HepG2
experiment encode accession: ENCSR887LYD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR399VVK
encode release date: 2017-06-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB713CKP
size range: 450-650

source_name: Homo sapiens HepG2 immortalized cell line

value: immortalized cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS632SNG at ENCODE; https://www.encodeproject.org/ENCBS632SNG/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from K562 (ENCLB394RCX)

description:
https://www.encodeproject.org/experiments/ENCSR886RYH/
***************
biological replicate number: 3
technical replicate number: 1
description: NONO ChIP-seq on human K562
experiment encode accession: ENCSR886RYH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB394RCX
size range: 450-650

value: NONO

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS626VGF at ENCODE; https://www.encodeproject.org/ENCBS626VGF/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from upper lobe of left lung (ENCLB175MYB)

description:
https://www.encodeproject.org/experiments/ENCSR888OWU/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human upper lobe of left lung
experiment encode accession: ENCSR888OWU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR061CNP
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB175MYB
size range: 450-650

source_name: Homo sapiens upper lobe of left lung tissue female adult (51 year)

value: upper lobe of left lung

value: tissue

value: 51 year

value: ENCBS011GFV at ENCODE; https://www.encodeproject.org/ENCBS011GFV/


title: ChIP-seq from GM12878 (ENCLB265VHJ)

description:
https://www.encodeproject.org/experiments/ENCSR976TBC/
***************
biological replicate number: 2
technical replicate number: 1
description: IRF5 ChIP-seq on human GM12878
experiment encode accession: ENCSR976TBC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2017-02-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB265VHJ
size range: 450-650

value: immortalized cell line

value: unknown

value: ENCBS339VHO at ENCODE; https://www.encodeproject.org/ENCBS339VHO/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from K562 (ENCLB972NRV)

description:
https://www.encodeproject.org/experiments/ENCSR886RYH/
***************
biological replicate number: 4
technical replicate number: 1
description: NONO ChIP-seq on human K562
experiment encode accession: ENCSR886RYH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB972NRV
size range: 450-650

value: NONO

value: ENCBS366EQO at ENCODE; https://www.encodeproject.org/ENCBS366EQO/


title: microRNA-seq from adrenal gland (ENCLB800OXT)

description:
https://www.encodeproject.org/experiments/ENCSR848SBA/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on human adrenal gland
experiment encode accession: ENCSR848SBA
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2017-01-31
lab: Ali Mortazavi, UCI
library encode accession: ENCLB800OXT
size range: <30

source_name: Homo sapiens adrenal gland tissue male adult (37 years)

value: adrenal gland

value: Adrenal Gland

value: male

value: Barbara Wold, Caltech

value: 37 year

value: ENCBS636AEJ at ENCODE; https://www.encodeproject.org/ENCBS636AEJ/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: microRNA-seq from adrenal gland (ENCLB586SCU)

description:
https://www.encodeproject.org/experiments/ENCSR848SBA/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on human adrenal gland
experiment encode accession: ENCSR848SBA
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2017-01-31
lab: Ali Mortazavi, UCI
library encode accession: ENCLB586SCU
size range: <30

value: tissue

value: adult

value: ENCBS156HYA at ENCODE; https://www.encodeproject.org/ENCBS156HYA/


title: ChIP-seq from gastroesophageal sphincter (ENCLB589WEA)

description:
https://www.encodeproject.org/experiments/ENCSR976KYQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Tue Sep 20 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR976KYQ
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB589WEA

source_name: Homo sapiens gastroesophageal sphincter tissue male adult (37 years)

value: Control

value: gastroesophageal sphincter

value: Richard Myers, HAIB

value: ENCBS057FSI at ENCODE; https://www.encodeproject.org/ENCBS057FSI/


title: ChIP-seq from GM12878 (ENCLB171USF)

description:
https://www.encodeproject.org/experiments/ENCSR784VIQ/
***************
biological replicate number: 1
technical replicate number: 1
description: NR2C1 ChIP-seq on human GM12878
experiment encode accession: ENCSR784VIQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB171USF
size range: 450-650

value: immortalized cell line

value: unknown

value: female

value: Michael Snyder, Stanford

value: ENCBS607NAA at ENCODE; https://www.encodeproject.org/ENCBS607NAA/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: ChIP-seq from MCF-7 (ENCLB266UFP)

description:
https://www.encodeproject.org/experiments/ENCSR979FQP/
***************
biological replicate number: 2
technical replicate number: 1
description: GATAD2B ChIP-seq on human MCF-7
experiment encode accession: ENCSR979FQP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB266UFP
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS110CZN at ENCODE; https://www.encodeproject.org/ENCBS110CZN/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from HepG2 (ENCLB032RZA)

description:
https://www.encodeproject.org/experiments/ENCSR868JLS/
***************
biological replicate number: 2
technical replicate number: 1
description: U2AF1 ChIP-seq in HepG2
experiment encode accession: ENCSR868JLS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR735QJO
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB032RZA
size range: 200-400

value: U2AF1 ChIP-seq in HepG2

value: male

value: Xiang-Dong Fu, UCSD

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS945FES at ENCODE; https://www.encodeproject.org/ENCBS945FES/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from 22Rv1 (ENCLB110WLV)

description:
https://www.encodeproject.org/experiments/ENCSR847XGE/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on human 22Rv1
experiment encode accession: ENCSR847XGE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR933UGQ
encode release date: 2017-06-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB110WLV
size range: 450-650

source_name: Homo sapiens 22Rv1 immortalized cell line treated with 10 nM 17beta-hydroxy-5alpha-androstan-3-one for 4 hours

value: CTCF

value: immortalized cell line

value: not collected

value: carcinoma (prostate)

value: unknown

value: treatment_term_id:CHEBI:16330; treatment_term_name:17beta-hydroxy-5alpha-androstan-3-one; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS070BKF at ENCODE; https://www.encodeproject.org/ENCBS070BKF/

value: derived from ENCODE donor ENCDO719HIY; https://www.encodeproject.org/ENCDO719HIY/


title: ChIP-seq from esophagus squamous epithelium (ENCLB446NVK)

description:
https://www.encodeproject.org/experiments/ENCSR877OYD/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human esophagus squamous epithelium
experiment encode accession: ENCSR877OYD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR710DTC
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB446NVK
size range: 450-650

source_name: Homo sapiens esophagus squamous epithelium tissue female adult (51 year)

value: esophagus squamous epithelium

value: tissue

value: female

value: Michael Snyder, Stanford

value: 51 year

value: adult

value: ENCBS969YPI at ENCODE; https://www.encodeproject.org/ENCBS969YPI/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from 22Rv1 (ENCLB204YIW)

description:
https://www.encodeproject.org/experiments/ENCSR847XGE/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human 22Rv1
experiment encode accession: ENCSR847XGE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR933UGQ
encode release date: 2017-06-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB204YIW
size range: 450-650

value: ENCBS626QQL at ENCODE; https://www.encodeproject.org/ENCBS626QQL/


title: ChIP-seq from upper lobe of left lung (ENCLB348TAL)

description:
https://www.encodeproject.org/experiments/ENCSR976HZM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Mon Sep 26 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR976HZM
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB348TAL

source_name: Homo sapiens upper lobe of left lung tissue male adult (37 years)

value: Control

value: upper lobe of left lung

value: male

value: Richard Myers, HAIB

value: 37 year

value: ENCBS623YOK at ENCODE; https://www.encodeproject.org/ENCBS623YOK/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from adrenal gland (ENCLB742FWC)

description:
https://www.encodeproject.org/experiments/ENCSR867NUH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human adrenal gland
experiment encode accession: ENCSR867NUH
assay title: ChIP-seq
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB742FWC
size range: 450-650

source_name: Homo sapiens adrenal gland tissue female adult (51 year)

value: adrenal gland

value: ENCBS055JKA at ENCODE; https://www.encodeproject.org/ENCBS055JKA/


title: ChIP-seq from GM12878 (ENCLB712YAL)

description:
https://www.encodeproject.org/experiments/ENCSR778UBR/
***************
biological replicate number: 6
technical replicate number: 1
description: ARID3A ChIP-seq on human GM12878
experiment encode accession: ENCSR778UBR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB712YAL
size range: 450-650

value: immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: ENCBS594YOH at ENCODE; https://www.encodeproject.org/ENCBS594YOH/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: ChIP-seq from HepG2 (ENCLB590RYX)

description:
https://www.encodeproject.org/experiments/ENCSR748EXO/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR748EXO
assay title: ChIP-seq
encode release date: 2017-02-17
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB590RYX
size range: 200-400

value: Control ChIP-seq on HepG2 cells

value: Xiang-Dong Fu, UCSD

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS821ETN at ENCODE; https://www.encodeproject.org/ENCBS821ETN/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from GM12878 (ENCLB353KNE)

description:
https://www.encodeproject.org/experiments/ENCSR784VIQ/
***************
biological replicate number: 2
technical replicate number: 1
description: NR2C1 ChIP-seq on human GM12878
experiment encode accession: ENCSR784VIQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB353KNE
size range: 450-650

value: adult

value: female

value: Michael Snyder, Stanford

value: ENCBS436SAI at ENCODE; https://www.encodeproject.org/ENCBS436SAI/


title: ChIP-seq from spleen (ENCLB400YCA)

description:
https://www.encodeproject.org/experiments/ENCSR999EPI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human spleen
experiment encode accession: ENCSR999EPI
assay title: ChIP-seq
encode release date: 2017-05-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB400YCA
size range: 450-650

source_name: Homo sapiens spleen tissue male adult (54 years)

value: Control

value: spleen

value: tissue

value: male

value: 54 year

value: ENCBS400GCR at ENCODE; https://www.encodeproject.org/ENCBS400GCR/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from tibial nerve (ENCLB717LHN)

description:
https://www.encodeproject.org/experiments/ENCSR999DEZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human tibial nerve
experiment encode accession: ENCSR999DEZ
assay title: ChIP-seq
encode release date: 2016-12-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB717LHN
size range: 450-650

source_name: Homo sapiens tibial nerve tissue female adult (53 years)

value: tibial nerve

value: 53 year

value: ENCBS004OVW at ENCODE; https://www.encodeproject.org/ENCBS004OVW/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from uterus (ENCLB034VNY)

description:
https://www.encodeproject.org/experiments/ENCSR999QVR/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human uterus
experiment encode accession: ENCSR999QVR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR224COZ
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB034VNY
size range: 450-650

source_name: Homo sapiens uterus tissue female adult (51 year)

value: uterus

value: 51 year

value: ENCBS867AWW at ENCODE; https://www.encodeproject.org/ENCBS867AWW/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from HepG2 (ENCLB228NLK)

description:
https://www.encodeproject.org/experiments/ENCSR887LYD/
***************
biological replicate number: 2
technical replicate number: 1
description: SMARCC2 ChIP-seq on human HepG2
experiment encode accession: ENCSR887LYD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR399VVK
encode release date: 2017-06-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB228NLK
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS717QJM at ENCODE; https://www.encodeproject.org/ENCBS717QJM/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB992WLF)

description:
https://www.encodeproject.org/experiments/ENCSR748EXO/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR748EXO
assay title: ChIP-seq
encode release date: 2017-02-17
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB992WLF
size range: 200-400

value: Control

value: Control ChIP-seq on HepG2 cells

value: male

value: Xiang-Dong Fu, UCSD

value: ENCBS374CKM at ENCODE; https://www.encodeproject.org/ENCBS374CKM/


title: ChIP-seq from thyroid gland (ENCLB734CFY)

description:
https://www.encodeproject.org/experiments/ENCSR975JIE/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human thyroid gland
experiment encode accession: ENCSR975JIE
assay title: ChIP-seq
encode release date: 2016-11-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB734CFY
size range: 450-650

source_name: Homo sapiens thyroid gland tissue male adult (54 years)

value: thyroid gland

value: tissue

value: 54 year

value: adult

value: ENCBS995JJM at ENCODE; https://www.encodeproject.org/ENCBS995JJM/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from vagina (ENCLB948PGH)

description:
https://www.encodeproject.org/experiments/ENCSR975QNR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on vagina
experiment encode accession: ENCSR975QNR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR538IHE
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB948PGH

source_name: Homo sapiens vagina tissue female adult (51 year)

value: vagina

value: female

value: Richard Myers, HAIB

value: 51 year

value: ENCBS663CSI at ENCODE; https://www.encodeproject.org/ENCBS663CSI/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/3f8fc69e-ea3f-4971-ba3a-231a1e60e46c/@@download/attachment/84259.svs


title: ChIP-seq from GM12878 (ENCLB425GXU)

description:
https://www.encodeproject.org/experiments/ENCSR778UBR/
***************
biological replicate number: 5
technical replicate number: 1
description: ARID3A ChIP-seq on human GM12878
experiment encode accession: ENCSR778UBR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB425GXU
size range: 450-650

value: immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: Michael Snyder, Stanford

value: unknown

value: ENCBS519VWT at ENCODE; https://www.encodeproject.org/ENCBS519VWT/

value: derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: Hi-C from astrocyte of the spinal cord (ENCLB150SZC)

description:
https://www.encodeproject.org/experiments/ENCSR974LXZ/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on astrocyte of the spinal cord
experiment encode accession: ENCSR974LXZ
assay title: Hi-C
assembly: hg19
encode release date: 2017-08-15
lab: Job Dekker, UMass
library encode accession: ENCLB150SZC

source_name: Homo sapiens astrocyte of the spinal cord primary cell

value: astrocyte of the spinal cord

value: primary cell

value: astrocytes spinal cord

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS302AAA at ENCODE; https://www.encodeproject.org/ENCBS302AAA/

value: derived from ENCODE donor ENCDO224AAA; https://www.encodeproject.org/ENCDO224AAA/

value: ENCODE dbxrefs HA-sp; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HA-sp

value: ScienCell sample source; http://www.sciencellonline.com/human-astrocytes-spinal-cord.html


title: ChIP-seq from gastrocnemius medialis (ENCLB475ZNE)

description:
https://www.encodeproject.org/experiments/ENCSR998NQG/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on human gastrocnemius medialis
experiment encode accession: ENCSR998NQG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR126QXT
encode release date: 2017-02-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB475ZNE
size range: 450-650

source_name: Homo sapiens gastrocnemius medialis tissue male adult (54 years)

value: CTCF

value: gastrocnemius medialis

value: tissue

value: male

value: 54 year

value: adult

value: ENCBS291EBC at ENCODE; https://www.encodeproject.org/ENCBS291EBC/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Hi-C from astrocyte of the spinal cord (ENCLB575YVL)

description:
https://www.encodeproject.org/experiments/ENCSR974LXZ/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on astrocyte of the spinal cord
experiment encode accession: ENCSR974LXZ
assay title: Hi-C
assembly: hg19
encode release date: 2017-08-15
lab: Job Dekker, UMass
library encode accession: ENCLB575YVL

value: astrocyte of the spinal cord

value: unknown

value: ENCBS995OME at ENCODE; https://www.encodeproject.org/ENCBS995OME/


title: ChIP-seq from esophagus squamous epithelium (ENCLB152UUP)

description:
https://www.encodeproject.org/experiments/ENCSR783XDX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human esophagus squamous epithelium
experiment encode accession: ENCSR783XDX
assay title: ChIP-seq
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB152UUP
size range: 450-650

source_name: Homo sapiens esophagus squamous epithelium tissue male adult (37 years)

value: Control

value: esophagus squamous epithelium

value: Michael Snyder, Stanford

value: 37 year

value: ENCBS312CXQ at ENCODE; https://www.encodeproject.org/ENCBS312CXQ/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from GM12878 (ENCLB000IIU)

description:
https://www.encodeproject.org/experiments/ENCSR861JUQ/
***************
biological replicate number: 2
technical replicate number: 1
description: FOXK2 ChIP-seq on human GM12878
experiment encode accession: ENCSR861JUQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-01-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB000IIU
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: immortalized cell line

value: female

value: ENCBS339VHO at ENCODE; https://www.encodeproject.org/ENCBS339VHO/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from GM12878 (ENCLB344OMN)

description:
https://www.encodeproject.org/experiments/ENCSR861JUQ/
***************
biological replicate number: 1
technical replicate number: 1
description: FOXK2 ChIP-seq on human GM12878
experiment encode accession: ENCSR861JUQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-01-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB344OMN
size range: 450-650

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: adult

value: ENCBS276RPG at ENCODE; https://www.encodeproject.org/ENCBS276RPG/

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166