title: ChIP-seq from stomach (ENCLB605EEA)

description:
https://www.encodeproject.org/experiments/ENCSR288LNF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse stomach
experiment encode accession: ENCSR288LNF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR050VUZ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB605EEA
size range: 300-500

value: Stomach from 15 postnatal 0 day mice

value: ENCBS045AAA at ENCODE; https://www.encodeproject.org/ENCBS045AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from neural tube (ENCLB624GYB)

status: Public on Jun 22 2016

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR427OZM/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse neural tube
experiment encode accession: ENCSR427OZM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR138YZB
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB624GYB
size range: 300-500

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Mus musculus

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (11.5 days)

tag: antibody

value: neural tube

value: tissue

tag: description

value: Neural tube from 88 embyronic 11.5 day mice

tag: biosample encode accession

tag: age

tag: dev stage

value: embryonic

tag: Sex

value: pooled male and female

tag: health state

value: healthy

tag: lab

value: Len Pennacchio, LBNL

tag: link

value: ENCBS183YVD at ENCODE; https://www.encodeproject.org/ENCBS183YVD/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from neural tube (ENCLB828EQL)

description:
https://www.encodeproject.org/experiments/ENCSR289SWJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 13.5 day mouse neural tube
experiment encode accession: ENCSR289SWJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR295GGT
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB828EQL
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (13.5 days)

value: Neural tube from embryonic 13.5 day mice

value: ENCBS956BQY at ENCODE; https://www.encodeproject.org/ENCBS956BQY/


title: ChIP-seq from kidney (ENCLB240YIT)

description:
https://www.encodeproject.org/experiments/ENCSR425FLT/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR425FLT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB240YIT
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex embryo (14.5 days)

value: kidney

value: Kidney from pooled embryonic 14.5 day mice

value: ENCBS569AAA at ENCODE; https://www.encodeproject.org/ENCBS569AAA/


title: ChIP-seq from midbrain (ENCLB228TND)

description:
https://www.encodeproject.org/experiments/ENCSR286OKN/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR286OKN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR359ETU
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB228TND
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (13.5 days)

value: midbrain

value: Midbrain from embryonic 13.5 day mice

value: ENCBS725LVX at ENCODE; https://www.encodeproject.org/ENCBS725LVX/


title: ChIP-seq from kidney (ENCLB512WWJ)

description:
https://www.encodeproject.org/experiments/ENCSR425FLT/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR425FLT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB512WWJ
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: ENCBS565AAA at ENCODE; https://www.encodeproject.org/ENCBS565AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from intestine (ENCLB542GYN)

description:
https://www.encodeproject.org/experiments/ENCSR424END/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse intestine
experiment encode accession: ENCSR424END
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR645QSY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB542GYN
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex embryo (14.5 days)

value: intestine

value: tissue

value: Intestine from 34 embryonic 14.5 day mice

value: ENCBS020AAA at ENCODE; https://www.encodeproject.org/ENCBS020AAA/


title: total RNA-seq from hindbrain (ENCLB408EFI)

description:
https://www.encodeproject.org/experiments/ENCSR420QTO/
***************
biological replicate number: 1
technical replicate number: 1
description: e12.5 hindbrain
experiment encode accession: ENCSR420QTO
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB408EFI
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

library_source: transcriptomic

molecule: total RNA

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days)

value: hindbrain

value: Hindbrain from 120 embryonic 12.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS406RIE at ENCODE; https://www.encodeproject.org/ENCBS406RIE/


title: total RNA-seq from hindbrain (ENCLB008IOE)

description:
https://www.encodeproject.org/experiments/ENCSR420QTO/
***************
biological replicate number: 2
technical replicate number: 1
description: e12.5 hindbrain
experiment encode accession: ENCSR420QTO
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB008IOE
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

value: Hindbrain from 88 embryonic 12.5 day mice

value: ENCBS022IBY at ENCODE; https://www.encodeproject.org/ENCBS022IBY/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from liver (ENCLB086TJW)

description:
https://www.encodeproject.org/experiments/ENCSR419MSI/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR419MSI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB086TJW
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (11.5 days)

value: liver

value: Liver from pooled embryonic 11.5 day mice

value: ENCBS522YOW at ENCODE; https://www.encodeproject.org/ENCBS522YOW/


title: WGBS from forebrain (ENCLB563IJD)

description:
https://www.encodeproject.org/experiments/ENCSR415FAF/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR415FAF
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB563IJD
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days)

extract_protocol:
general protocol: https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png
general protocol: https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png
extraction method: Qiagen DNeasy Blood and Tissue Kit
general protocol: https://www.encodeproject.org/documents/9d5f346e-88d3-45e2-b28a-2b26f537490f/@@download/attachment/Ecker_Methyl_protocol_v030114.pdf

value: forebrain

value: Forebrain from 34 embryonic 14.5 day mice

value: ENCBS014AAA at ENCODE; https://www.encodeproject.org/ENCBS014AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from forebrain (ENCLB943LGR)

description:
https://www.encodeproject.org/experiments/ENCSR415FAF/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR415FAF
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB943LGR
size range: 180-500

value: tissue


title: ChIP-seq from liver (ENCLB884PSS)

description:
https://www.encodeproject.org/experiments/ENCSR419MSI/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR419MSI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB884PSS
size range: 300-500

value: Liver from 109 embyronic 11.5 day mice

value: ENCBS746POP at ENCODE; https://www.encodeproject.org/ENCBS746POP/


title: ChIP-seq from hindbrain (ENCLB593VSS)

description:
https://www.encodeproject.org/experiments/ENCSR417TXZ/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR417TXZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR896PWV
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB593VSS
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex embryo (14.5 days)

value: hindbrain

value: Hindbrain from 24 embryonic 14.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS004AAA at ENCODE; https://www.encodeproject.org/ENCBS004AAA/


title: ChIP-seq from stomach (ENCLB872XWN)

description:
https://www.encodeproject.org/experiments/ENCSR282GAG/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse stomach
experiment encode accession: ENCSR282GAG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR240XQT
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB872XWN
size range: 300-500

source_name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (15.5 days)

value: stomach

value: Stomach from 78 embryonic 15.5 day mice

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS915SZN at ENCODE; https://www.encodeproject.org/ENCBS915SZN/


title: ChIP-seq from stomach (ENCLB248TGT)

description:
https://www.encodeproject.org/experiments/ENCSR282GAG/
***************
biological replicate number: 2
technical replicate number: 2,3,1
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse stomach
experiment encode accession: ENCSR282GAG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR240XQT
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB248TGT
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: Stomach from 62 embryonic 15.5 day mice

value: ENCBS355TAQ at ENCODE; https://www.encodeproject.org/ENCBS355TAQ/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from lung (ENCLB555HXC)

description:
https://www.encodeproject.org/experiments/ENCSR409HKJ/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR409HKJ
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB555HXC
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex postnatal (0 days)

value: lung

value: Lung from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS042AAA at ENCODE; https://www.encodeproject.org/ENCBS042AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from lung (ENCLB582TDF)

description:
https://www.encodeproject.org/experiments/ENCSR280SYC/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR280SYC
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB582TDF
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex embryo (14.5 days)

value: Control

value: tissue

value: Lung from 34 embryonic 14.5 day mice

value: embryonic

value: ENCBS018AAA at ENCODE; https://www.encodeproject.org/ENCBS018AAA/


title: ChIP-seq from limb (ENCLB212HCA)

description:
https://www.encodeproject.org/experiments/ENCSR286IGS/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR286IGS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB212HCA
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (11.5 days)

value: limb

value: Limb from 88 embyronic 11.5 day mice

value: pooled male and female

value: healthy

value: ENCBS681XPR at ENCODE; https://www.encodeproject.org/ENCBS681XPR/


title: WGBS from forebrain (ENCLB243BXJ)

description:
https://www.encodeproject.org/experiments/ENCSR415FAF/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR415FAF
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB243BXJ
size range: 180-500

value: forebrain

value: Forebrain from 24 embyonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/


title: WGBS from lung (ENCLB173LVB)

description:
https://www.encodeproject.org/experiments/ENCSR409HKJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR409HKJ
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB173LVB
size range: 180-500

value: lung

value: Lung from 15 postnatal 0 day mice

value: 0 day

value: postnatal


title: ChIP-seq from lung (ENCLB294KZO)

description:
https://www.encodeproject.org/experiments/ENCSR280SYC/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR280SYC
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB294KZO
size range: 300-500

value: Control

value: tissue

value: Lung from 24 embryonic 14.5 day mice

value: ENCBS006AAA at ENCODE; https://www.encodeproject.org/ENCBS006AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from embryonic facial prominence (ENCLB500IXT)

description:
https://www.encodeproject.org/experiments/ENCSR406VPQ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 11.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR406VPQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR068AQC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB500IXT
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (11.5 days)

value: embryonic facial prominence

value: Craniofacial prominence from 88 embyronic 11.5 day mice

value: embryonic

value: ENCBS468NAL at ENCODE; https://www.encodeproject.org/ENCBS468NAL/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from lung (ENCLB844FCB)

description:
https://www.encodeproject.org/experiments/ENCSR409HKJ/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR409HKJ
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB844FCB
size range: 180-500

value: Lung from pooled postnatal 0 day mice

value: pooled male and female

value: healthy

value: ENCBS558AAA at ENCODE; https://www.encodeproject.org/ENCBS558AAA/


title: ChIP-seq from liver (ENCLB781PRP)

description:
https://www.encodeproject.org/experiments/ENCSR274AQL/
***************
biological replicate number: 1
technical replicate number: 1,2
description: Input control ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR274AQL
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB781PRP
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days)

value: liver

value: Liver from 78 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS734ENZ at ENCODE; https://www.encodeproject.org/ENCBS734ENZ/


title: ChIP-seq from embryonic facial prominence (ENCLB725OTX)

description:
https://www.encodeproject.org/experiments/ENCSR406VPQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 11.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR406VPQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR068AQC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB725OTX
size range: 300-500

value: tissue

value: Craniofacial prominence from 109 embyronic 11.5 day mice

value: ENCBS141GPQ at ENCODE; https://www.encodeproject.org/ENCBS141GPQ/


title: ChIP-seq from midbrain (ENCLB959JNY)

description:
https://www.encodeproject.org/experiments/ENCSR286OKN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR286OKN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR359ETU
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB959JNY
size range: 300-500

value: midbrain

value: Midbrain from embryonic 13.5 day mice

value: ENCBS185VNZ at ENCODE; https://www.encodeproject.org/ENCBS185VNZ/


title: ChIP-seq from kidney (ENCLB150IXN)

description:
https://www.encodeproject.org/experiments/ENCSR405TGI/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR405TGI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2016-03-16
lab: Bing Ren, UCSD
library encode accession: ENCLB150IXN
size range: 300-500

value: kidney

value: Kidney from pooled embryonic 14.5 day mice

value: embryonic

value: ENCBS569AAA at ENCODE; https://www.encodeproject.org/ENCBS569AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from kidney (ENCLB385SJU)

description:
https://www.encodeproject.org/experiments/ENCSR405TGI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR405TGI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2016-03-16
lab: Bing Ren, UCSD
library encode accession: ENCLB385SJU
size range: 300-500

value: pooled male and female

value: healthy

value: ENCBS565AAA at ENCODE; https://www.encodeproject.org/ENCBS565AAA/


title: WGBS from forebrain (ENCLB522HSM)

description:
https://www.encodeproject.org/experiments/ENCSR415FAF/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR415FAF
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB522HSM
size range: 180-500

value: forebrain

value: Forebrain from 24 embyonic 14.5 day mice

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/


title: ChIP-seq from embryonic facial prominence (ENCLB286IWW)

description:
https://www.encodeproject.org/experiments/ENCSR401GRX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR401GRX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR068AQC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB286IWW
size range: 300-500

value: embryonic facial prominence

value: tissue

value: Len Pennacchio, LBNL

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from limb (ENCLB199JYZ)

description:
https://www.encodeproject.org/experiments/ENCSR286IGS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR286IGS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB199JYZ
size range: 300-500

value: limb

value: Limb from 109 embyronic 11.5 day mice

value: ENCBS066IEL at ENCODE; https://www.encodeproject.org/ENCBS066IEL/


title: ChIP-seq from limb (ENCLB720PDJ)

description:
https://www.encodeproject.org/experiments/ENCSR274ACJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse limb
experiment encode accession: ENCSR274ACJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR232EOO
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB720PDJ
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap limb tissue mixed sex embryo (14.5 days)

value: Limb from 34 embryonic 14.5 day mice

value: ENCBS023AAA at ENCODE; https://www.encodeproject.org/ENCBS023AAA/


title: ChIP-seq from limb (ENCLB704GGO)

description:
https://www.encodeproject.org/experiments/ENCSR274ACJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse limb
experiment encode accession: ENCSR274ACJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR232EOO
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB704GGO
size range: 300-500

value: Limb from 24 embryonic 14.5 day mice

value: embryonic

value: ENCBS011AAA at ENCODE; https://www.encodeproject.org/ENCBS011AAA/


title: WGBS from hindbrain (ENCLB563CUJ)

description:
https://www.encodeproject.org/experiments/ENCSR398UCM/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR398UCM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB563CUJ
size range: 180-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days)

value: hindbrain

value: Hindbrain from 88 embyronic 11.5 day mice

value: pooled male and female

value: healthy

value: ENCBS976DPO at ENCODE; https://www.encodeproject.org/ENCBS976DPO/


title: ChIP-seq from kidney (ENCLB387ILW)

description:
https://www.encodeproject.org/experiments/ENCSR399UVI/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR399UVI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB387ILW
size range: 300-500

value: kidney

value: Kidney from pooled embryonic 14.5 day mice

value: ENCBS569AAA at ENCODE; https://www.encodeproject.org/ENCBS569AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from lung (ENCLB748BIW)

description:
https://www.encodeproject.org/experiments/ENCSR409HKJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR409HKJ
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB748BIW
size range: 180-500

value: lung

value: tissue

value: Lung from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: Len Pennacchio, LBNL

value: ENCBS558AAA at ENCODE; https://www.encodeproject.org/ENCBS558AAA/


title: WGBS from hindbrain (ENCLB460GXJ)

description:
https://www.encodeproject.org/experiments/ENCSR398UCM/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR398UCM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB460GXJ
size range: 180-500

value: embryonic

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from intestine (ENCLB825XPH)

description:
https://www.encodeproject.org/experiments/ENCSR272XPJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR272XPJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR635JIC
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB825XPH
size range: 300-500

source_name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (16.5 days)

value: intestine

value: Intestine pooled from embyonic 16.5 day mice

value: ENCBS856EWN at ENCODE; https://www.encodeproject.org/ENCBS856EWN/


title: WGBS from hindbrain (ENCLB560UXD)

description:
https://www.encodeproject.org/experiments/ENCSR398UCM/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR398UCM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB560UXD
size range: 180-500

value: hindbrain

value: Hindbrain from 109 embyronic 11.5 day mice

value: pooled male and female

value: healthy

value: ENCBS199NDR at ENCODE; https://www.encodeproject.org/ENCBS199NDR/


title: ChIP-seq from intestine (ENCLB946DWB)

description:
https://www.encodeproject.org/experiments/ENCSR272XPJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR272XPJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR635JIC
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB946DWB
size range: 300-500

value: Intestine from 41 embyonic 16.5 day mice

value: ENCBS072GMU at ENCODE; https://www.encodeproject.org/ENCBS072GMU/


title: ChIP-seq from forebrain (ENCLB584NDM)

description:
https://www.encodeproject.org/experiments/ENCSR398NCK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on postnatal 0 day mouse forebrain
experiment encode accession: ENCSR398NCK
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB584NDM
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex postnatal (0 days)

value: Control

value: forebrain

value: tissue

value: Forebrain from 15 postnatal 0 day mice

value: ENCBS038AAA at ENCODE; https://www.encodeproject.org/ENCBS038AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from heart (ENCLB974CVE)

description:
https://www.encodeproject.org/experiments/ENCSR397YEG/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR397YEG
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB974CVE
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex postnatal (0 days)

value: heart

value: Heart from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: Len Pennacchio, LBNL

value: ENCBS041AAA at ENCODE; https://www.encodeproject.org/ENCBS041AAA/


title: WGBS from hindbrain (ENCLB239NLW)

description:
https://www.encodeproject.org/experiments/ENCSR398UCM/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR398UCM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB239NLW
size range: 180-500

value: hindbrain

value: Hindbrain from 109 embyronic 11.5 day mice

value: embryonic

value: pooled male and female

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: microRNA-seq from forebrain (ENCLB508WQD)

description:
https://www.encodeproject.org/experiments/ENCSR267CQC/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse forebrain
experiment encode accession: ENCSR267CQC
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB508WQD
size range: <30

source_name: Mus musculus strain B6NCrl forebrain tissue postnatal (0 days)

value: single forebrain from pup 1

value: not collected

value: Barbara Wold, Caltech

value: ENCBS033OJJ at ENCODE; https://www.encodeproject.org/ENCBS033OJJ/


title: WGBS from heart (ENCLB494TES)

description:
https://www.encodeproject.org/experiments/ENCSR397YEG/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR397YEG
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB494TES
size range: 180-500

value: tissue

value: Heart from pooled postnatal 0 day mice

value: healthy

value: ENCBS557AAA at ENCODE; https://www.encodeproject.org/ENCBS557AAA/


title: microRNA-seq from forebrain (ENCLB083UKV)

description:
https://www.encodeproject.org/experiments/ENCSR267CQC/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse forebrain
experiment encode accession: ENCSR267CQC
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB083UKV
size range: <30

value: forebrain

value: single forebrain from pup 3

value: 0 day

value: ENCBS804WMS at ENCODE; https://www.encodeproject.org/ENCBS804WMS/


title: WGBS from heart (ENCLB630ITM)

description:
https://www.encodeproject.org/experiments/ENCSR397YEG/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR397YEG
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB630ITM
size range: 180-500

value: heart

value: Heart from 15 postnatal 0 day mice

value: postnatal

value: Len Pennacchio, LBNL

value: ENCBS041AAA at ENCODE; https://www.encodeproject.org/ENCBS041AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from neural tube (ENCLB169EEQ)

description:
https://www.encodeproject.org/experiments/ENCSR265NBM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR265NBM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR254WNU
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB169EEQ
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue mixed sex embryo (14.5 days)

value: neural tube

value: Neural tube from 24 embryonic 14.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS013AAA at ENCODE; https://www.encodeproject.org/ENCBS013AAA/


title: ChIP-seq from kidney (ENCLB332NVD)

description:
https://www.encodeproject.org/experiments/ENCSR399UVI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR399UVI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR091DHJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB332NVD
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex embryo (14.5 days)

value: kidney

value: tissue

value: Kidney from pooled embryonic 14.5 day mice

value: healthy

value: ENCBS565AAA at ENCODE; https://www.encodeproject.org/ENCBS565AAA/


title: ChIP-seq from embryonic facial prominence (ENCLB577UUC)

description:
https://www.encodeproject.org/experiments/ENCSR401GRX/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR401GRX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR068AQC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB577UUC
size range: 300-500

value: embryonic facial prominence

value: Craniofacial prominence from 88 embyronic 11.5 day mice

value: ENCBS468NAL at ENCODE; https://www.encodeproject.org/ENCBS468NAL/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from lung (ENCLB673IWX)

description:
https://www.encodeproject.org/experiments/ENCSR387YSD/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR387YSD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB673IWX
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (16.5 days)

value: lung

value: Lung from 41 embyonic 16.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS833ZFI at ENCODE; https://www.encodeproject.org/ENCBS833ZFI/


title: ChIP-seq from forebrain (ENCLB171BSN)

description:
https://www.encodeproject.org/experiments/ENCSR264TXI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR264TXI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB171BSN
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days)

value: forebrain

value: Forebrain from 24 embyonic 14.5 day mice

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from lung (ENCLB068FDQ)

description:
https://www.encodeproject.org/experiments/ENCSR387YSD/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR387YSD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB068FDQ
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: Lung pooled from embyonic 16.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS377RBN at ENCODE; https://www.encodeproject.org/ENCBS377RBN/


title: ChIP-seq from heart (ENCLB647YXR)

description:
https://www.encodeproject.org/experiments/ENCSR380BBL/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K27me3 ChIP-seq on embryonic 13.5 day mouse heart
experiment encode accession: ENCSR380BBL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR077QRY
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB647YXR
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (13.5 days)

value: heart

value: tissue

value: Heart from embryonic 13.5 day mice

value: healthy

value: ENCBS814PLT at ENCODE; https://www.encodeproject.org/ENCBS814PLT/


title: ChIP-seq from limb (ENCLB931FRW)

description:
https://www.encodeproject.org/experiments/ENCSR264HHL/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse limb
experiment encode accession: ENCSR264HHL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR070OXL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB931FRW
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (15.5 days)

value: limb

value: Limb from 62 embryonic 15.5 day mice

value: ENCBS696JKV at ENCODE; https://www.encodeproject.org/ENCBS696JKV/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from hindbrain (ENCLB822VHE)

description:
https://www.encodeproject.org/experiments/ENCSR375GSG/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR375GSG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB822VHE
size range: 300-500

value: hindbrain

value: Hindbrain from 109 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS199NDR at ENCODE; https://www.encodeproject.org/ENCBS199NDR/


title: ChIP-seq from hindbrain (ENCLB247SQQ)

description:
https://www.encodeproject.org/experiments/ENCSR375GSG/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR375GSG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB247SQQ
size range: 300-500

value: Hindbrain from 88 embyronic 11.5 day mice

value: ENCBS976DPO at ENCODE; https://www.encodeproject.org/ENCBS976DPO/


title: ChIP-seq from hindbrain (ENCLB010ZXU)

description:
https://www.encodeproject.org/experiments/ENCSR365CUP/
***************
biological replicate number: 2
technical replicate number: 1,2,3
description: H3K9me3 ChIP-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR365CUP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR066SPF
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB010ZXU
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex postnatal (0 days)

value: Hindbrain from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: ENCBS556AAA at ENCODE; https://www.encodeproject.org/ENCBS556AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from forebrain (ENCLB857UES)

description:
https://www.encodeproject.org/experiments/ENCSR264TXI/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR264TXI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB857UES
size range: 300-500

value: forebrain

value: tissue

value: Forebrain from 34 embryonic 14.5 day mice

value: embryonic

value: healthy

value: ENCBS014AAA at ENCODE; https://www.encodeproject.org/ENCBS014AAA/


title: ChIP-seq from hindbrain (ENCLB837TWG)

description:
https://www.encodeproject.org/experiments/ENCSR365CUP/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR365CUP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR066SPF
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB837TWG
size range: 300-500

value: hindbrain

value: Hindbrain from 15 postnatal 0 day mice

value: ENCBS040AAA at ENCODE; https://www.encodeproject.org/ENCBS040AAA/


title: WGBS from heart (ENCLB127MSR)

description:
https://www.encodeproject.org/experiments/ENCSR397YEG/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR397YEG
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB127MSR
size range: 180-500

value: heart

value: Heart from pooled postnatal 0 day mice

value: Len Pennacchio, LBNL

value: ENCBS557AAA at ENCODE; https://www.encodeproject.org/ENCBS557AAA/


title: ChIP-seq from heart (ENCLB365CIQ)

description:
https://www.encodeproject.org/experiments/ENCSR373OCX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR373OCX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR334IOH
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB365CIQ
size range: 300-500

value: Heart from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS041AAA at ENCODE; https://www.encodeproject.org/ENCBS041AAA/


title: ChIP-seq from heart (ENCLB478BAU)

description:
https://www.encodeproject.org/experiments/ENCSR373OCX/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse heart
experiment encode accession: ENCSR373OCX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR334IOH
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB478BAU
size range: 300-500

value: pooled male and female

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from limb (ENCLB064ZMU)

description:
https://www.encodeproject.org/experiments/ENCSR264HHL/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse limb
experiment encode accession: ENCSR264HHL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR070OXL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB064ZMU
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: limb

value: tissue

value: Limb from 78 embryonic 15.5 day mice

value: ENCBS735QNY at ENCODE; https://www.encodeproject.org/ENCBS735QNY/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from intestine (ENCLB631GVX)

description:
https://www.encodeproject.org/experiments/ENCSR358XYP/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR358XYP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR635JIC
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB631GVX
size range: 300-500

value: intestine

value: Intestine from 41 embyonic 16.5 day mice

value: embryonic

value: healthy

value: ENCBS072GMU at ENCODE; https://www.encodeproject.org/ENCBS072GMU/


title: ChIP-seq from midbrain (ENCLB453XXL)

description:
https://www.encodeproject.org/experiments/ENCSR261OAK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR261OAK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB453XXL
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (11.5 days)

value: midbrain

value: Midbrain of 109 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS228OBS at ENCODE; https://www.encodeproject.org/ENCBS228OBS/


title: ChIP-seq from neural tube (ENCLB301XCG)

description:
https://www.encodeproject.org/experiments/ENCSR991FSR/
***************
biological replicate number: 1
technical replicate number: 2,3,1
description: Control ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR991FSR
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB301XCG
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (12.5 days)

value: Control

value: neural tube

value: Neural tube from 120 embryonic 12.5 day mice

value: ENCBS405OOH at ENCODE; https://www.encodeproject.org/ENCBS405OOH/


title: ChIP-seq from lung (ENCLB955AJT)

description:
https://www.encodeproject.org/experiments/ENCSR262CSU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR262CSU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR241RIG
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB955AJT
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex postnatal (0 days)

value: lung

value: tissue

value: Lung from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: ENCBS042AAA at ENCODE; https://www.encodeproject.org/ENCBS042AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from heart (ENCLB079VBC)

description:
https://www.encodeproject.org/experiments/ENCSR360ANE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse heart
experiment encode accession: ENCSR360ANE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR840PFW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB079VBC
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex embryo (14.5 days)

value: heart

value: Heart from pooled embryonic 14.5 day mice

value: embryonic

value: healthy

value: ENCBS566AAA at ENCODE; https://www.encodeproject.org/ENCBS566AAA/


title: ChIP-seq from intestine (ENCLB600UTC)

description:
https://www.encodeproject.org/experiments/ENCSR358XYP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR358XYP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR635JIC
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB600UTC
size range: 300-500

value: intestine

value: Intestine pooled from embyonic 16.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS856EWN at ENCODE; https://www.encodeproject.org/ENCBS856EWN/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from intestine (ENCLB907ESO)

description:
https://www.encodeproject.org/experiments/ENCSR353IFP/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR353IFP
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB907ESO
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)

value: tissue

value: Intestine from 15 postnatal 0 day mice

value: ENCBS044AAA at ENCODE; https://www.encodeproject.org/ENCBS044AAA/


title: ChIP-seq from neural tube (ENCLB613XJW)

description:
https://www.encodeproject.org/experiments/ENCSR991FSR/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR991FSR
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB613XJW
size range: 300-500

value: Control

value: neural tube

value: Neural tube from 88 embryonic 12.5 day mice

value: ENCBS254TSW at ENCODE; https://www.encodeproject.org/ENCBS254TSW/


title: ChIP-seq from neural tube (ENCLB814XVJ)

description:
https://www.encodeproject.org/experiments/ENCSR265NBM/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR265NBM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR254WNU
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB814XVJ
size range: 300-500

value: Neural tube from 34 embryonic 14.5 day mice

value: pooled male and female

value: ENCBS025AAA at ENCODE; https://www.encodeproject.org/ENCBS025AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from midbrain (ENCLB520PSJ)

description:
https://www.encodeproject.org/experiments/ENCSR261OAK/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR261OAK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB520PSJ
size range: 300-500

value: midbrain

value: Midbrain from 88 embyronic 11.5 day mice

value: embryonic

value: healthy

value: ENCBS802FTI at ENCODE; https://www.encodeproject.org/ENCBS802FTI/


title: WGBS from intestine (ENCLB073UAF)

description:
https://www.encodeproject.org/experiments/ENCSR353IFP/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR353IFP
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB073UAF
size range: 180-500

value: intestine

value: Intestine from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: Len Pennacchio, LBNL

value: ENCBS560AAA at ENCODE; https://www.encodeproject.org/ENCBS560AAA/


title: WGBS from intestine (ENCLB332AJQ)

description:
https://www.encodeproject.org/experiments/ENCSR353IFP/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR353IFP
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB332AJQ
size range: 180-500

value: tissue


title: ChIP-seq from hindbrain (ENCLB397YWO)

description:
https://www.encodeproject.org/experiments/ENCSR972LUE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR972LUE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB397YWO
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days)

value: hindbrain

value: Hindbrain from 88 embryonic 12.5 day mice

value: ENCBS022IBY at ENCODE; https://www.encodeproject.org/ENCBS022IBY/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from midbrain (ENCLB342VCY)

description:
https://www.encodeproject.org/experiments/ENCSR391WSS/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR391WSS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR889XXJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB342VCY
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex postnatal (0 days)

value: Midbrain from pooled postnatal 0 day mice

value: pooled male and female

value: ENCBS555AAA at ENCODE; https://www.encodeproject.org/ENCBS555AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from hindbrain (ENCLB042JAS)

description:
https://www.encodeproject.org/experiments/ENCSR972LUE/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR972LUE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB042JAS
size range: 300-500

value: Hindbrain from 120 embryonic 12.5 day mice

value: embryonic

value: healthy

value: ENCBS406RIE at ENCODE; https://www.encodeproject.org/ENCBS406RIE/


title: WGBS from intestine (ENCLB073TPU)

description:
https://www.encodeproject.org/experiments/ENCSR353IFP/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR353IFP
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB073TPU
size range: 180-500

value: intestine

value: Intestine from 15 postnatal 0 day mice

value: 0 day

value: ENCBS044AAA at ENCODE; https://www.encodeproject.org/ENCBS044AAA/


title: ChIP-seq from intestine (ENCLB835YIT)

description:
https://www.encodeproject.org/experiments/ENCSR260OUP/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse intestine
experiment encode accession: ENCSR260OUP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR645QSY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB835YIT
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex embryo (14.5 days)

value: tissue

value: Intestine from 34 embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS020AAA at ENCODE; https://www.encodeproject.org/ENCBS020AAA/


title: ChIP-seq from heart (ENCLB289ENI)

description:
https://www.encodeproject.org/experiments/ENCSR968NPX/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR968NPX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB289ENI
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (12.5 days)

value: heart

value: ENCBS004ZLN at ENCODE; https://www.encodeproject.org/ENCBS004ZLN/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from lung (ENCLB989ZWI)

description:
https://www.encodeproject.org/experiments/ENCSR262CSU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR262CSU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR241RIG
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB989ZWI
size range: 300-500

value: lung

value: Lung from pooled postnatal 0 day mice

value: postnatal

value: pooled male and female

value: ENCBS558AAA at ENCODE; https://www.encodeproject.org/ENCBS558AAA/


title: ChIP-seq from hindbrain (ENCLB378UHZ)

description:
https://www.encodeproject.org/experiments/ENCSR259KYK/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR259KYK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685UUM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB378UHZ
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (15.5 days)

value: hindbrain

value: Hindbrain from 62 embryonic 15.5 day mice

value: embryonic

value: healthy

value: ENCBS948UKU at ENCODE; https://www.encodeproject.org/ENCBS948UKU/


title: ChIP-seq from heart (ENCLB660FNL)

description:
https://www.encodeproject.org/experiments/ENCSR968NPX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR968NPX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB660FNL
size range: 300-500

value: tissue

value: Heart from 12.5 day mice

value: ENCBS452TDN at ENCODE; https://www.encodeproject.org/ENCBS452TDN/


title: ChIP-seq from forebrain (ENCLB031MGV)

description:
https://www.encodeproject.org/experiments/ENCSR352NVU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR352NVU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR587JRQ
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB031MGV
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (16.5 days)

value: forebrain

value: Forebrain pooled from embyonic 16.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS156DHU at ENCODE; https://www.encodeproject.org/ENCBS156DHU/


title: ChIP-seq from intestine (ENCLB563UAU)

description:
https://www.encodeproject.org/experiments/ENCSR260OUP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse intestine
experiment encode accession: ENCSR260OUP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR645QSY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB563UAU
size range: 300-500

value: intestine

value: Intestine from 24 embryonic 14.5 day mice

value: ENCBS008AAA at ENCODE; https://www.encodeproject.org/ENCBS008AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from neural tube (ENCLB203KHH)

description:
https://www.encodeproject.org/experiments/ENCSR351BDM/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR351BDM
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB203KHH
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (15.5 days)

value: Control

value: neural tube

value: Neural tube from 62 embryonic 15.5 day mice

value: pooled male and female

value: ENCBS206NRE at ENCODE; https://www.encodeproject.org/ENCBS206NRE/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB254EHC)

description:
https://www.encodeproject.org/experiments/ENCSR966AIB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR966AIB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB254EHC
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days)

value: tissue

value: Forebrain from 68 embryonic 12.5 day mice

value: embryonic

value: healthy

value: ENCBS617DPG at ENCODE; https://www.encodeproject.org/ENCBS617DPG/


title: ChIP-seq from hindbrain (ENCLB683WIY)

description:
https://www.encodeproject.org/experiments/ENCSR259KYK/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR259KYK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685UUM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB683WIY
size range: 300-500

value: hindbrain

value: Hindbrain from 78 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS958AHU at ENCODE; https://www.encodeproject.org/ENCBS958AHU/


title: ChIP-seq from forebrain (ENCLB486BSA)

description:
https://www.encodeproject.org/experiments/ENCSR352NVU/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR352NVU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR587JRQ
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB486BSA
size range: 300-500

value: forebrain

value: Forebrain from 41 embyonic 16.5 day mice

value: ENCBS512LKA at ENCODE; https://www.encodeproject.org/ENCBS512LKA/


title: ChIP-seq from neural tube (ENCLB264HEC)

description:
https://www.encodeproject.org/experiments/ENCSR351BDM/
***************
biological replicate number: 1
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR351BDM
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB264HEC
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

value: Control

value: neural tube

value: Neural tube from 78 embryonic 15.5 day mice

value: ENCBS944KEZ at ENCODE; https://www.encodeproject.org/ENCBS944KEZ/


title: ChIP-seq from forebrain (ENCLB157DUX)

description:
https://www.encodeproject.org/experiments/ENCSR966AIB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR966AIB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB157DUX
size range: 300-500

value: Forebrain from 120 embryonic 12.5 day mice

value: pooled male and female

value: ENCBS974GPH at ENCODE; https://www.encodeproject.org/ENCBS974GPH/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from embryonic facial prominence (ENCLB072RTS)

description:
https://www.encodeproject.org/experiments/ENCSR258AED/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR258AED
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742ZUI
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB072RTS
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (13.5 days)

value: embryonic facial prominence

value: tissue

value: Embryonic facial prominence from embryonic 13.5 day mice

value: embryonic

value: healthy

value: ENCBS764ZZN at ENCODE; https://www.encodeproject.org/ENCBS764ZZN/


title: ChIP-seq from limb (ENCLB926SDQ)

description:
https://www.encodeproject.org/experiments/ENCSR943QUH/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR943QUH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB926SDQ
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (12.5 days)

value: limb

value: Limb from 68 embryonic 12.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS313XRY at ENCODE; https://www.encodeproject.org/ENCBS313XRY/


title: ChIP-seq from limb (ENCLB965MYQ)

description:
https://www.encodeproject.org/experiments/ENCSR943QUH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR943QUH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB965MYQ
size range: 300-500

value: Limb from 88 embryonic 12.5 day mice

value: ENCBS731DGJ at ENCODE; https://www.encodeproject.org/ENCBS731DGJ/


title: ChIP-seq from hindbrain (ENCLB578TLS)

description:
https://www.encodeproject.org/experiments/ENCSR257JSX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse hindbrain
experiment encode accession: ENCSR257JSX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR752KDM
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB578TLS
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (16.5 days)

value: hindbrain

value: Hindbrain pooled from embyonic 16.5 day mice

value: ENCBS436LSH at ENCODE; https://www.encodeproject.org/ENCBS436LSH/


title: ChIP-seq from liver (ENCLB493RSV)

description:
https://www.encodeproject.org/experiments/ENCSR258RGT/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR258RGT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR274AQL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB493RSV
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days)

value: liver

value: Liver from 78 embryonic 15.5 day mice

value: pooled male and female

value: ENCBS734ENZ at ENCODE; https://www.encodeproject.org/ENCBS734ENZ/


title: ChIP-seq from embryonic facial prominence (ENCLB482IAO)

description:
https://www.encodeproject.org/experiments/ENCSR258AED/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K4me1 ChIP-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR258AED
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742ZUI
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB482IAO
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: embryonic facial prominence

value: tissue

value: Embryonic facial prominence from embryonic 13.5 day mice

value: ENCBS847MIW at ENCODE; https://www.encodeproject.org/ENCBS847MIW/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from limb (ENCLB656BBC)

description:
https://www.encodeproject.org/experiments/ENCSR938MUD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR938MUD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB656BBC
size range: 300-500

value: limb

value: embryonic

value: healthy


title: ChIP-seq from neural tube (ENCLB083PPB)

description:
https://www.encodeproject.org/experiments/ENCSR254WNU/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR254WNU
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB083PPB
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue mixed sex embryo (14.5 days)

value: Control

value: neural tube

value: Neural tube from 34 embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS025AAA at ENCODE; https://www.encodeproject.org/ENCBS025AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from midbrain (ENCLB377QBI)

description:
https://www.encodeproject.org/experiments/ENCSR344GSM/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR344GSM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB377QBI
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex embryo (14.5 days)

value: midbrain

value: Midbrain from 34 embryonic 14.5 day mice

value: ENCBS015AAA at ENCODE; https://www.encodeproject.org/ENCBS015AAA/


title: ChIP-seq from hindbrain (ENCLB262CUB)

description:
https://www.encodeproject.org/experiments/ENCSR349NIS/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR349NIS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR545RUT
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB262CUB
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (13.5 days)

value: hindbrain

value: Hindbrain from embryonic 13.5 day mice

value: pooled male and female

value: ENCBS296PIR at ENCODE; https://www.encodeproject.org/ENCBS296PIR/


title: ChIP-seq from neural tube (ENCLB064UJG)

description:
https://www.encodeproject.org/experiments/ENCSR254WNU/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR254WNU
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB064UJG
size range: 300-500

value: tissue

value: Neural tube from 24 embryonic 14.5 day mice

value: ENCBS013AAA at ENCODE; https://www.encodeproject.org/ENCBS013AAA/


title: ChIP-seq from limb (ENCLB733CBH)

description:
https://www.encodeproject.org/experiments/ENCSR938MUD/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR938MUD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB733CBH
size range: 300-500

value: limb

value: Limb from 68 embryonic 12.5 day mice

value: embryonic

value: healthy

value: ENCBS313XRY at ENCODE; https://www.encodeproject.org/ENCBS313XRY/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from neural tube (ENCLB987LDA)

description:
https://www.encodeproject.org/experiments/ENCSR345HNA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 13.5 day mouse neural tube
experiment encode accession: ENCSR345HNA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR295GGT
encode release date: 2016-03-17
lab: Bing Ren, UCSD
library encode accession: ENCLB987LDA
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (13.5 days)

value: neural tube

value: Neural tube from embryonic 13.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS549OYR at ENCODE; https://www.encodeproject.org/ENCBS549OYR/


title: WGBS from midbrain (ENCLB078NRZ)

description:
https://www.encodeproject.org/experiments/ENCSR344GSM/
***************
biological replicate number: 2
technical replicate number: 3
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR344GSM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB078NRZ
size range: 180-500

value: midbrain

value: Midbrain from 34 embryonic 14.5 day mice

value: ENCBS015AAA at ENCODE; https://www.encodeproject.org/ENCBS015AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from neural tube (ENCLB148MZS)

description:
https://www.encodeproject.org/experiments/ENCSR930AFR/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR930AFR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB148MZS
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (12.5 days)

value: tissue

value: Neural tube from 88 embryonic 12.5 day mice

value: pooled male and female

value: ENCBS254TSW at ENCODE; https://www.encodeproject.org/ENCBS254TSW/


title: ChIP-seq from neural tube (ENCLB796NZQ)

description:
https://www.encodeproject.org/experiments/ENCSR345HNA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 13.5 day mouse neural tube
experiment encode accession: ENCSR345HNA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR295GGT
encode release date: 2016-03-17
lab: Bing Ren, UCSD
library encode accession: ENCLB796NZQ
size range: 300-500

value: ENCBS956BQY at ENCODE; https://www.encodeproject.org/ENCBS956BQY/


title: ChIP-seq from midbrain (ENCLB922UGJ)

description:
https://www.encodeproject.org/experiments/ENCSR254AHA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR254AHA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR413VHH
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB922UGJ
size range: 300-500

value: embryonic


title: ChIP-seq from neural tube (ENCLB664TFT)

description:
https://www.encodeproject.org/experiments/ENCSR891SAW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR891SAW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB664TFT
size range: 300-500

value: healthy


title: ChIP-seq from midbrain (ENCLB778GJH)

description:
https://www.encodeproject.org/experiments/ENCSR253IEG/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR253IEG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR359ETU
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB778GJH
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (13.5 days)

value: Midbrain from embryonic 13.5 day mice

value: ENCBS725LVX at ENCODE; https://www.encodeproject.org/ENCBS725LVX/


title: WGBS from midbrain (ENCLB278IIN)

description:
https://www.encodeproject.org/experiments/ENCSR344GSM/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR344GSM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB278IIN
size range: 180-500

value: Midbrain from 24 embryonic 14.5 day mice

value: ENCBS003AAA at ENCODE; https://www.encodeproject.org/ENCBS003AAA/


title: WGBS from midbrain (ENCLB344FMH)

description:
https://www.encodeproject.org/experiments/ENCSR344GSM/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR344GSM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB344FMH
size range: 180-500

value: Len Pennacchio, LBNL


title: ChIP-seq from neural tube (ENCLB019NKM)

description:
https://www.encodeproject.org/experiments/ENCSR930AFR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR930AFR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB019NKM
size range: 300-500

value: neural tube

value: Neural tube from 120 embryonic 12.5 day mice

value: ENCBS405OOH at ENCODE; https://www.encodeproject.org/ENCBS405OOH/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from neural tube (ENCLB681OYE)

description:
https://www.encodeproject.org/experiments/ENCSR891SAW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR891SAW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB681OYE
size range: 300-500


title: ChIP-seq from midbrain (ENCLB650YNN)

description:
https://www.encodeproject.org/experiments/ENCSR253IEG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 13.5 day mouse midbrain
experiment encode accession: ENCSR253IEG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR359ETU
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB650YNN
size range: 300-500

value: midbrain

value: ENCBS185VNZ at ENCODE; https://www.encodeproject.org/ENCBS185VNZ/


title: ChIP-seq from midbrain (ENCLB235BNL)

description:
https://www.encodeproject.org/experiments/ENCSR254AHA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR254AHA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR413VHH
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB235BNL
size range: 300-500

value: tissue

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from liver (ENCLB839SRL)

description:
https://www.encodeproject.org/experiments/ENCSR341XCL/
***************
biological replicate number: 1
technical replicate number: 1,2,3
description: H3K9me3 ChIP-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR341XCL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR617RDY
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB839SRL
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NTac;B6NCrl/Lap liver tissue mixed sex postnatal (0 days)

value: liver

value: Liver from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: ENCBS043AAA at ENCODE; https://www.encodeproject.org/ENCBS043AAA/


title: ChIP-seq from liver (ENCLB899BGM)

description:
https://www.encodeproject.org/experiments/ENCSR846ZCW/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR846ZCW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB899BGM
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (11.5 days)

value: Liver from pooled embryonic 11.5 day mice

value: embryonic

value: healthy

value: ENCBS522YOW at ENCODE; https://www.encodeproject.org/ENCBS522YOW/


title: WGBS from midbrain (ENCLB068GZH)

description:
https://www.encodeproject.org/experiments/ENCSR344GSM/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR344GSM
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB068GZH
size range: 180-500

value: Midbrain from 34 embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS015AAA at ENCODE; https://www.encodeproject.org/ENCBS015AAA/


title: ChIP-seq from liver (ENCLB179MNX)

description:
https://www.encodeproject.org/experiments/ENCSR846ZCW/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR846ZCW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB179MNX
size range: 300-500

value: Liver from 109 embyronic 11.5 day mice

value: ENCBS746POP at ENCODE; https://www.encodeproject.org/ENCBS746POP/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from liver (ENCLB441OKU)

description:
https://www.encodeproject.org/experiments/ENCSR252GKD/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 16.5 day mouse liver
experiment encode accession: ENCSR252GKD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR082JEN
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB441OKU
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (16.5 days)

value: tissue

value: Liver from 41 embyonic 16.5 day mice

value: ENCBS279BWR at ENCODE; https://www.encodeproject.org/ENCBS279BWR/


title: ChIP-seq from liver (ENCLB143AGO)

description:
https://www.encodeproject.org/experiments/ENCSR252GKD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 16.5 day mouse liver
experiment encode accession: ENCSR252GKD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR082JEN
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB143AGO
size range: 300-500

value: liver

value: Liver pooled from embyonic 16.5 day mice

value: ENCBS236CDJ at ENCODE; https://www.encodeproject.org/ENCBS236CDJ/


title: ChIP-seq from liver (ENCLB454NHW)

description:
https://www.encodeproject.org/experiments/ENCSR341XCL/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on postnatal 0 day mouse liver
experiment encode accession: ENCSR341XCL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR617RDY
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB454NHW
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: Liver from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: ENCBS559AAA at ENCODE; https://www.encodeproject.org/ENCBS559AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from heart (ENCLB991XMI)

description:
https://www.encodeproject.org/experiments/ENCSR840QFC/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR840QFC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB991XMI
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (12.5 days)

value: heart

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS004ZLN at ENCODE; https://www.encodeproject.org/ENCBS004ZLN/


title: ChIP-seq from stomach (ENCLB482ACN)

description:
https://www.encodeproject.org/experiments/ENCSR335WME/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR335WME
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR497YBQ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB482ACN
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex embryo (14.5 days)

value: stomach

value: Stomach pooled from embryonic 14.5 day mice

value: healthy

value: ENCBS564AAA at ENCODE; https://www.encodeproject.org/ENCBS564AAA/


title: ChIP-seq from heart (ENCLB544ZJI)

description:
https://www.encodeproject.org/experiments/ENCSR251LFV/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse heart
experiment encode accession: ENCSR251LFV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685AMF
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB544ZJI
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (16.5 days)

value: tissue

value: Heart from 41 embyonic 16.5 day mice

value: ENCBS217XWR at ENCODE; https://www.encodeproject.org/ENCBS217XWR/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from lung (ENCLB186RPB)

description:
https://www.encodeproject.org/experiments/ENCSR340VNK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR340VNK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR241RIG
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB186RPB
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex postnatal (0 days)

value: lung

value: Lung from 15 postnatal 0 day mice

value: 0 day

value: ENCBS042AAA at ENCODE; https://www.encodeproject.org/ENCBS042AAA/


title: ChIP-seq from lung (ENCLB283QNJ)

description:
https://www.encodeproject.org/experiments/ENCSR250LXH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR250LXH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR241RIG
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB283QNJ
size range: 300-500

value: postnatal

value: pooled male and female

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from heart (ENCLB550JTU)

description:
https://www.encodeproject.org/experiments/ENCSR251LFV/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse heart
experiment encode accession: ENCSR251LFV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685AMF
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB550JTU
size range: 300-500

value: heart

value: Heart pooled from embyonic 16.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS955JPC at ENCODE; https://www.encodeproject.org/ENCBS955JPC/


title: ChIP-seq from embryonic facial prominence (ENCLB989YUQ)

description:
https://www.encodeproject.org/experiments/ENCSR813SCQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR813SCQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB989YUQ
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (12.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from 120 embryonic 12.5 day mice

value: healthy

value: ENCBS047UII at ENCODE; https://www.encodeproject.org/ENCBS047UII/


title: ChIP-seq from stomach (ENCLB733REP)

description:
https://www.encodeproject.org/experiments/ENCSR335WME/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR335WME
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR497YBQ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB733REP
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: stomach

value: tissue

value: Stomach pooled from embryonic 14.5 day mice

value: ENCBS568AAA at ENCODE; https://www.encodeproject.org/ENCBS568AAA/


title: ChIP-seq from embryonic facial prominence (ENCLB692KRK)

description:
https://www.encodeproject.org/experiments/ENCSR813SCQ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR813SCQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB692KRK
size range: 300-500

value: Embryonic facial prominence from 88 embryonic 12.5 day mice

value: ENCBS399GYO at ENCODE; https://www.encodeproject.org/ENCBS399GYO/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from lung (ENCLB919NAK)

description:
https://www.encodeproject.org/experiments/ENCSR249AUA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR249AUA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR280SYC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB919NAK
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex embryo (14.5 days)

value: lung

value: Lung from 34 embryonic 14.5 day mice

value: pooled male and female

value: ENCBS018AAA at ENCODE; https://www.encodeproject.org/ENCBS018AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from liver (ENCLB675RRB)

description:
https://www.encodeproject.org/experiments/ENCSR334GBD/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR334GBD
assay title: WGBS
assembly: mm10
encode release date: 2016-03-14
lab: Joe Ecker, Salk
library encode accession: ENCLB675RRB
size range: 180-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (12.5 days)

value: liver

value: Liver from 88 embryonic 12.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS479VPX at ENCODE; https://www.encodeproject.org/ENCBS479VPX/


title: WGBS from liver (ENCLB340LHO)

description:
https://www.encodeproject.org/experiments/ENCSR334GBD/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR334GBD
assay title: WGBS
assembly: mm10
encode release date: 2016-03-14
lab: Joe Ecker, Salk
library encode accession: ENCLB340LHO
size range: 180-500

value: healthy


title: ChIP-seq from hindbrain (ENCLB054IHU)

description:
https://www.encodeproject.org/experiments/ENCSR784TLR/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR784TLR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB054IHU
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days)

value: hindbrain

value: tissue

value: Hindbrain from 88 embryonic 12.5 day mice

value: ENCBS022IBY at ENCODE; https://www.encodeproject.org/ENCBS022IBY/


title: ChIP-seq from lung (ENCLB372CVJ)

description:
https://www.encodeproject.org/experiments/ENCSR249AUA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR249AUA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR280SYC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB372CVJ
size range: 300-500

value: Lung from 24 embryonic 14.5 day mice

value: ENCBS006AAA at ENCODE; https://www.encodeproject.org/ENCBS006AAA/


title: WGBS from liver (ENCLB657WHQ)

description:
https://www.encodeproject.org/experiments/ENCSR334GBD/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR334GBD
assay title: WGBS
assembly: mm10
encode release date: 2016-03-14
lab: Joe Ecker, Salk
library encode accession: ENCLB657WHQ
size range: 180-500

value: Liver from 120 embryonic 12.5 day mice

value: ENCBS236ISK at ENCODE; https://www.encodeproject.org/ENCBS236ISK/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: microRNA-seq from liver (ENCLB756TRS)

description:
https://www.encodeproject.org/experiments/ENCSR246FZV/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR246FZV
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB756TRS
size range: <30

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days)

value: Liver from 62 embryonic 15.5 day mice

value: pooled male and female

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/


title: ChIP-seq from hindbrain (ENCLB890RDW)

description:
https://www.encodeproject.org/experiments/ENCSR784TLR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR784TLR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB890RDW
size range: 300-500

value: Hindbrain from 120 embryonic 12.5 day mice

value: ENCBS406RIE at ENCODE; https://www.encodeproject.org/ENCBS406RIE/