title: ChIP-seq from MCF-7 (ENCLB285IQF)

description:
https://www.encodeproject.org/experiments/ENCSR801SWX/
***************
biological replicate number: 2
technical replicate number: 1
description: TARDBP ChIP-seq on human MCF-7
experiment encode accession: ENCSR801SWX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-02-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB285IQF
size range: 450-650

value: TARDBP

value: immortalized cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS345ZJP at ENCODE; https://www.encodeproject.org/ENCBS345ZJP/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: WT repeat 1, Input DNA [12410X10]

status: Public on Oct 24 2017

type: SRA

city: Salt Lake City

first: Tim

last: Formosa

state: UT

address: 15 N Medical Dr East RM 4100

department: Biochemistry

country: USA

institute: University of Utah School of Medicine

library_source: genomic

data_processing:
Illumina sequencing reads for each biological replicate were sequentially aligned to both the S. cerevisiae genome (SGD release R64, UCSC SacCer3) and the Candida glabrata genome (Ensembl Fungi release 30, GCA_000002545.2) using Novoalign, allowing for one random assignment of multi-mapping reads. Alignments were assigned to the genome based on the best alignment metrics. Reads aligning to both genomes equally were considered orthologous and discarded.
Fragment coverage for S. cerevisiae was generated with BioToolBox bam2wig with an extension of 130 bp, a consensus fragment length as determined by peak cross-strand correlation, and depth-normalized by scaling to reads per million mapped (RPM).
The coverage tracks were further normalized for ChIP efficiency by dividing by the number of unique C. glabrata alignments (scaled to millions) in each sample (Orlando et al, 2014).
After normalization, a mean consensus track was generated by merging the replicates using bedtools and dividing by the number of replicates.
To generate fold enrichment tracks, genomic intervals with zero coverage in the Input samples were artificially set to a non-zero value of 1 (a value well below the genomic mean) and a fold enrichment calculated with macs2 bdgcmp. Coverage track manipulation was performed using the script manipulate_wig.
Genome_build: Saccharomyces cerevisiae: SGD release R64, UCSC SacCer3
Genome_build: Candida glabrata: Ensembl Fungi release 30, GCA_000002545.2
Supplementary_files_format_and_content: Calibrated BigWig files (ending in .cal.bw) represent individual replicate ChIP fragment coverage normalized for depth (RPM, Reads Per Million mapped) and calibrated for ChIP efficiency based on the number of Candida glabrata alignments.
Supplementary_files_format_and_content: Log2 fold enrichment BigWig files (ending in _log2FE.bw) represent ChIP fragment coverage normalized for depth, calibrated to Candida glabrata, averaged between all three biological replicates, divided by the Input coverage, and converted to a log2 scale. The Log2 fold enrichmnet BigWig files are available on the series record.

molecule: genomic DNA

organism:
Saccharomyces cerevisiae
Nakaseomyces glabratus

source_name: Whole yeast cells

growth_protocol: Cultures were grown to logarithmic phase and harvested by centrigugation.

extract_protocol:
Cells were subjected to cross-linking with formaldehyde (1%) for 20 min at room temperature. Glycine (0.125 mM) was added to quench crosslinking and cells were washed with 1X phosphate-buffered saline. For the reference genome, Candida glabrata (ATCC® 36909) was grown at 25°C and cross-linked with formaldehyde as described above. Cross-linked S. cerevisiae (40 × 10^7) and C. glabrata (20 × 10^7) cells were mixed in FA140+SDS buffer (50 mM HEPES-KOH, pH 7.5, 140 mM NaCl, 1 mM EDTA, 1% Triton X-100, 0.1% sodium deoxycholate, 140 mM NaCl, 0.1% SDS) and lysed by bead beating. Lysates from two sets of S. cerevisiae and C. glabrata mixture (120 × 10^7 cells) were pooled for sonication using a Diagenode Bioruptor™ (6 cycles of 5 min each, 30 sec ON and 30 sec OFF at high setting). Soluble chromatin was obtained by two sequential high-speed centrifugations. To remove SDS, soluble chromatin obtained from four batches of yeast cells were pooled and transferred to a 5 mL Float-A-Lyzer G2 dialysis device (3.5 - 5 kD MWCO) (Spectra/Por), dialyzed initially for 2 h in 1 L FA buffer (50 mM HEPES-KOH, pH 7.5, 1 mM EDTA, 1% Triton X-100, 0.1% sodium deoxycholate) with 140 mM NaCl followed by an overnight dialysis against 4 L of the same buffer.
The dialysate was centrifuged at 13,000 rpm for 15 min at 4°C. A 100 ml aliquot was set aside for isolating input DNA. The remaining dialysate was split equally into three tubes and pre-cleared using 50 ml of blocked Dynabeads® Protein A for 1h at 4°C with end-over-end rotation. Blocking of Dynabeads® Protein A beads was performed at 4°C with end-over-end rotation for 4h using FA buffer containing 140 mM NaCl, bovine serum albumin (BSA) (0.2 mg/mL, New England Biolabs) and fish skin gelatin (0.5%, Sigma). Pre-cleared dialysate was combined with the custom-made rabbit polyclonal a-Spt6 antibody (30 ml; McCullough 2015). Cross-reactivity of the antibody, which was raised against S. cerevisiae Spt6, for C. glabrata Spt6 was verified by western blot (Figure S6). For a background control, the additional set of pre-cleared dialysate prepared from the wild type control strain was combined with pre-immune serum (30 ml). 100 ml blocked Dynabeads® Protein A was then added and incubated overnight at 4°C with end-over-end rotation. Beads were sequentially washed 5 min each with end-over-end rotation at 4°C with FA buffer + 140 mM NaCl (three washes), FA buffer + 1000 mM NaCl (two washes), FA buffer + 500 mM NaCl (two washes), and one wash each with LiCl/NP40 buffer (10 mM Tris.Cl, pH 8.0, 250 mM LiCl, 0.5% NP40, 0.5% sodium deoxycholate) and TE (10 mM Tris.Cl, pH 8.0, 1 mM EDTA). Elution and reverse crosslinking of ChIP and input DNA followed by RNase A and Proteinase K digestion steps were performed as described previously (Chandrasekharan et al., 2011). ChIP and input DNA were purified using the Qiagen MinElute PCR Purification kit according to the manufacturer's instructions, except two washes each with buffer QG and PE were performed.
Sequencing libraries were constructed using NEBNext® Multiplex Oligos (Index Primers Set 1 and Set 2) and NEBNext® ChIP-seq Library Prep Reagent Set for Illumina, and subjected to 50 bp single-end sequencing in an Illumina Hiseq2000 sequencer.
HiSeq 50 Cycle Single-Read Sequencing version 4: Sequencing libraries (25 pM) were chemically denatured and applied to an Illumina HiSeq v4 single read flow cell using an Illumina cBot.  Hybridized molecules were clonally amplified and annealed to sequencing primers with reagents from an Illumina HiSeq SR Cluster Kit v4-cBot (GD-401-4001).  Following transfer of the flowcell to an Illumina HiSeq 2500 instrument (HCSv2.2.38 and RTA v1.18.61), a 50 cycle single-read sequence run was performed using HiSeq SBS Kit v4 sequencing reagents (FC-401-4002)

tag: reference control

value: Candida glabrata

tag: strain

tag: relevant genotype

value: WT


title: ChIP-seq from MCF-7 (ENCLB525YCO)

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR801SWX/
***************
biological replicate number: 1
technical replicate number: 1
description: TARDBP ChIP-seq on human MCF-7
experiment encode accession: ENCSR801SWX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-02-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB525YCO
size range: 450-650

data_processing: See GSM*_README.txt supplementary file linked below

organism: Homo sapiens

source_name: Homo sapiens MCF-7 immortalized cell line

extract_protocol: not provided

tag: antibody

tag: line

tag: biosample encode accession

tag: Sex

value: female

tag: lab

value: Michael Snyder, Stanford

tag: health state

tag: age

tag: dev stage

value: adult

tag: link

value: ENCBS947NBH at ENCODE; https://www.encodeproject.org/ENCBS947NBH/


title: 6mA.IP.Ctrl.1

city: Atlanta

first: Bing

last: Yao

state: GA

address: 615 Michael St. Rm 323

department: Human Genetics

institute: Emory University

data_processing:
Library strategy: 6mA-IP-seq
Basecalls performed using CASAVA version 1.4
RNA-seq reads were aligned to mm9 using tophat v2.0.13 and differential RPKM expression values were extracted using cuffdiff v2.2.1
6mA-IP-seq reads were aligned to the mm9 genome assembly using bowtie version 0.12.9 with the standard parameters.
Differential regions (Loss.of.N6mA.xlsx and Gain.of.N6mA.xlsx) were identified by edgeR v3.4
Genome_build: mm9
Supplementary_files_format_and_content: RPKM, N6mA gain or loss

organism: Mus musculus

source_name: Mice prefrontal cortex

growth_protocol: All of the wild type mice that we used were on the C57BL/6 genetic background.All animal were hosted in Emory mice facility and procedures were performed according to protocols approved by Emory University Institutional Animal Care and Use Committee.

extract_protocol:
Mouse prefrontal cortex were dissected from the brain. Genomic DNAs were isolated by different brain tissues in 600 μl digestion buffer (100 mM Tris-HCl, pH 8.5, 5 mM EDTA, 0.2% SDS, 200 mM NaCl), Proteinase K (Thermo) treatment at 55°C for overnight. The second day, 600 μl of Phenol:Chloroform:Isoamyl Alcohol (25:24:1 Saturated with 10 mM Tris, pH 8.0, 1 mM EDTA) (P-3803, Sigma) was added to samples, mixed completely, and centrifuged for 10 min at 12,000 rpm. The aqueous layer solution was transferred into a new Eppendorf tube and precipitated with 600 μl isopropanol. The pellet was washed with 75% ethanol, air-dried, and eluted with Nuclease-Free Water (Ambion). PFC samples were homogenized in Trizol (Invitrogen) and processed according to the manufacturer’s instructions. RNA was then reverse transcribed using a SuperScript® III First-Strand Synthesis System (Invitrogen).
Genomic DNA was sonicated to 200-300bp fragments for IP-based 6mA enrichment using rabbit polyclonal antibody raised against 6mA (Synaptic Systems) at 1:100 in 1X IP buffer containing 100Mm Tris-HCl pH7.4, 150Mm NaCl, 0.05% Triton X-100. The IP was conducted with overnight platform rotation at 4°C without beads. Dynabeads Protein G (Novex by life technologies, REF 10009D 30mg/ml) were added and the mixture was rotated at 4°C for 2hr. The IPed beads were washed six times at room temperature with 1X ice-cold IP buffer, 5min each with rotation. After the wash, the IPed DNA fragments were eluted by either protease K digestion or 6mA competition. For protease K digestion-based elution, the IPed beads were treated with digestion buffer containing 1x TE, 0.25% SDS, and 0.25% Proteinase K (2.5mg/ml) at 55°C and 1400rpm for 2hr. The eluted DNA fragments were extracted once with phenol: chloroform: isoamyl alchohol =25:24:1 followed by extraction with chloroform alone, and then precipitation with glycogen, NaAc pH5.2, and 100% ethanol at -20C for at least 2hr or overnight. For 6mA base competition based elution, the IPed beads were treated with 1X IP buffer plus 2.6mM 6mA three times for 30 min each at room temperature. The eluted DNA fragments were precipitated without extraction with phenol and chloroform. 25ng of input genomic DNA or experimental enriched DNA were utilized for each library construction. 150-300 bp DNA fragments were selected by AMPure XP Beads (Beckman Coulter) after the adapter ligation. An Agilent 2100 BioAnalyzer was used to quantify the amplified DNA, qPCR was applied to accurately quantify the library concentration. 20 pM diluted libraries were used for sequencing. 50-cycle single-end sequencings were performed using Illumina HISeq 2000. Image processing and sequence extraction were done using the standard Illumina Pipeline. RNA-seq libraries were generated from duplicated samples per condition using the Illumina TruSeq RNA Sample Preparation Kit v2 following manufacturer’s protocol. The RNA-seq libraries were sequenced as 50-cycle pair-end runs using Illumina HiSeq 2000.

treatment_protocol: Mice were individually placed into a modified well-ventilated 50-ml centrifuge tube (Corning Inc., Corning, NY) daily from 10am to 12pm for 2 hours in their home cages during one or two whole weeks. The restrained mice could change from supine to prone position, but were not able to move forward or backward in tubes. The non-restrained control mice remained undisturbed in their home cages. After restraint stress, mice were released from the tube and returned to their home cages.

tag: stressed

value: no

value: Synaptic Systems N6-methyladenosine (Cat. No. 202 003)


title: ChIP-seq from gastrocnemius medialis (ENCLB911IJM)

description:
https://www.encodeproject.org/experiments/ENCSR915QUT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human gastrocnemius medialis
experiment encode accession: ENCSR915QUT
assay title: ChIP-seq
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB911IJM
size range: 450-650

source_name: Homo sapiens gastrocnemius medialis tissue female adult (51 year)

value: Control

value: gastrocnemius medialis

value: tissue

value: 51 year

value: ENCBS668EWD at ENCODE; https://www.encodeproject.org/ENCBS668EWD/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: RNAseq.Stressed.3

library_source: transcriptomic

data_processing:
Basecalls performed using CASAVA version 1.4
RNA-seq reads were aligned to mm9 using tophat v2.0.13 and differential RPKM expression values were extracted using cuffdiff v2.2.1
6mA-IP-seq reads were aligned to the mm9 genome assembly using bowtie version 0.12.9 with the standard parameters.
Peaks were called using MACS version 1.4.2 with the following setting: BW (200), GSIZE (mm).

molecule: total RNA

value: yes


title: Pre-immune repeat 3, ChIP [12410X3]

description:
log2 fold-enrichment file:
PI_log2FE.bw


title: microRNA-seq from heart left ventricle (ENCLB423NSB)

description:
https://www.encodeproject.org/experiments/ENCSR705STY/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on human heart left ventricle
experiment encode accession: ENCSR705STY
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2017-01-31
lab: Ali Mortazavi, UCI
library encode accession: ENCLB423NSB
size range: <30

source_name: Homo sapiens heart left ventricle tissue female adult (51 year)

value: heart left ventricle

tag: description

value: Heart - Left Ventricle

value: Barbara Wold, Caltech

value: ENCBS969RHA at ENCODE; https://www.encodeproject.org/ENCBS969RHA/


title: Pre-immune repeat 2, ChIP [12410X2]

description:
log2 fold-enrichment file:
PI_log2FE.bw

value: Candida glabrata

value: WT


title: Pre-immune repeat 1, ChIP [12410X1]

description:
log2 fold-enrichment file:
PI_log2FE.bw


title: RNAseq.Stressed.1


title: ChIP-seq from prostate gland (ENCLB143VFF)

description:
https://www.encodeproject.org/experiments/ENCSR911JAX/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human prostate gland
experiment encode accession: ENCSR911JAX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR047WFN
encode release date: 2016-11-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB143VFF
size range: 450-650

source_name: Homo sapiens prostate gland tissue male adult (37 years)

value: prostate gland

value: male

value: Michael Snyder, Stanford

value: 37 year

value: adult

value: ENCBS631JUH at ENCODE; https://www.encodeproject.org/ENCBS631JUH/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: RNAseq.Stressed.2


title: ChIP-seq from MCF-7 (ENCLB804MJB)

description:
https://www.encodeproject.org/experiments/ENCSR810WXH/
***************
biological replicate number: 2
technical replicate number: 1
description: TOE1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR810WXH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2017-06-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB804MJB
size range: 450-650

value: immortalized cell line

value: female

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS540TUZ at ENCODE; https://www.encodeproject.org/ENCBS540TUZ/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: microRNA-seq from heart left ventricle (ENCLB409AIE)

description:
https://www.encodeproject.org/experiments/ENCSR705STY/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on human heart left ventricle
experiment encode accession: ENCSR705STY
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2017-01-31
lab: Ali Mortazavi, UCI
library encode accession: ENCLB409AIE
size range: <30

value: heart left ventricle

value: tissue

value: Heart - Left Ventricle

value: Barbara Wold, Caltech

value: 51 year

value: ENCBS361CPX at ENCODE; https://www.encodeproject.org/ENCBS361CPX/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from MCF-7 (ENCLB774NMM)

description:
https://www.encodeproject.org/experiments/ENCSR702BYX/
***************
biological replicate number: 1
technical replicate number: 1
description: NFIB ChIP-seq on human MCF-7
experiment encode accession: ENCSR702BYX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB774NMM
size range: 450-650

value: NFIB

value: Michael Snyder, Stanford

value: ENCBS253AAE at ENCODE; https://www.encodeproject.org/ENCBS253AAE/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: RNAseq.Ctrl.2

value: no


title: ChIP-seq from prostate gland (ENCLB181KTC)

description:
https://www.encodeproject.org/experiments/ENCSR720USO/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human prostate gland
experiment encode accession: ENCSR720USO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR047WFN
encode release date: 2016-11-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB181KTC
size range: 450-650

value: CTCF

value: prostate gland

value: male

value: 37 year

value: adult

value: ENCBS631JUH at ENCODE; https://www.encodeproject.org/ENCBS631JUH/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: spt6-KK,AA repeat 2, ChIP [12412X5]

description:
log2 fold-enrichment file:
KA_log2FE.bw

value: Candida glabrata


title: ChIP-seq from K562 (ENCLB315ZKU)

description:
https://www.encodeproject.org/experiments/ENCSR710WLO/
***************
biological replicate number: 1
technical replicate number: 1
description: MGA ChIP-seq on human K562
experiment encode accession: ENCSR710WLO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB315ZKU
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: MGA

value: immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS953HJY at ENCODE; https://www.encodeproject.org/ENCBS953HJY/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from MCF-7 (ENCLB113WLR)

description:
https://www.encodeproject.org/experiments/ENCSR810WXH/
***************
biological replicate number: 1
technical replicate number: 1
description: TOE1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR810WXH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2017-06-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB113WLR
size range: 450-650

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS148TCA at ENCODE; https://www.encodeproject.org/ENCBS148TCA/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: RNAseq.Ctrl.3

value: no


title: spt6-KK,AA repeat 1, ChIP [12412X4]

description:
log2 fold-enrichment file:
KA_log2FE.bw

value: Candida glabrata


title: ChIP-seq from K562 (ENCLB486UZD)

description:
https://www.encodeproject.org/experiments/ENCSR710WLO/
***************
biological replicate number: 2
technical replicate number: 1
description: MGA ChIP-seq on human K562
experiment encode accession: ENCSR710WLO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB486UZD
size range: 450-650

value: MGA

value: adult

value: ENCBS320BUL at ENCODE; https://www.encodeproject.org/ENCBS320BUL/


title: ChIP-seq from HEK293 (ENCLB131UWB)

description:
https://www.encodeproject.org/experiments/ENCSR906PCS/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF223 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR906PCS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB131UWB
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF223 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF223 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS727PQJ at ENCODE; https://www.encodeproject.org/ENCBS727PQJ/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB005SGP)

description:
https://www.encodeproject.org/experiments/ENCSR906PCS/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF223 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR906PCS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB005SGP
size range: 450-650

value: female

value: ENCBS535XFL at ENCODE; https://www.encodeproject.org/ENCBS535XFL/


title: ChIP-seq from esophagus squamous epithelium (ENCLB341IGG)

description:
https://www.encodeproject.org/experiments/ENCSR710DTC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human esophagus squamous epithelium
experiment encode accession: ENCSR710DTC
assay title: ChIP-seq
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB341IGG
size range: 450-650

source_name: Homo sapiens esophagus squamous epithelium tissue female adult (51 year)

value: Control

value: esophagus squamous epithelium

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS969YPI at ENCODE; https://www.encodeproject.org/ENCBS969YPI/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: rpb1-FSP+,KRR+ repeat 3, ChIP [12412X3]

description:
log2 fold-enrichment file:
R3_log2FE.bw

value: Candida glabrata


title: ChIP-seq from right lobe of liver (ENCLB331LXY)

description:
https://www.encodeproject.org/experiments/ENCSR911GFJ/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human right lobe of liver
experiment encode accession: ENCSR911GFJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR336OPU
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB331LXY
size range: 450-650

source_name: Homo sapiens right lobe of liver tissue female adult (53 years)

value: CTCF

value: right lobe of liver

value: 53 year

value: adult

value: ENCBS904HZU at ENCODE; https://www.encodeproject.org/ENCBS904HZU/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: RNAseq.Ctrl.1

value: no


title: rpb1-FSP+,KRR+ repeat 2, ChIP [12412X2]

description:
log2 fold-enrichment file:
R3_log2FE.bw


title: ChIP-seq from HEK293 (ENCLB476MKF)

description:
https://www.encodeproject.org/experiments/ENCSR801BWR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF155 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR801BWR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB476MKF
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF155 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF155 under the control of a CMV promoter.

value: female

value: unknown

value: embryonic

value: ENCBS556GOV at ENCODE; https://www.encodeproject.org/ENCBS556GOV/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: spt6-KK,AA repeat 3, ChIP [12412X6]

description:
log2 fold-enrichment file:
KA_log2FE.bw


title: ChIP-seq from transverse colon (ENCLB800CCK)

description:
https://www.encodeproject.org/experiments/ENCSR704IJM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on transverse colon
experiment encode accession: ENCSR704IJM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR147NJH
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB800CCK

source_name: Homo sapiens transverse colon tissue female adult (51 year)

extract_protocol: extraction method: see document

value: transverse colon

value: tissue

value: Richard Myers, HAIB

value: 51 year

value: ENCBS767MTN at ENCODE; https://www.encodeproject.org/ENCBS767MTN/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/7b223824-1a15-4554-b9a1-88b1d9060190/@@download/attachment/84280.svs


title: ChIP-seq from SK-N-SH (ENCLB506WLR)

description:
https://www.encodeproject.org/experiments/ENCSR945NFL/
***************
biological replicate number: 2
technical replicate number: 1
description: USF2 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR945NFL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000FDA
encode release date: 2017-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB506WLR
size range: 150-350

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ENCBS526AQV at ENCODE; https://www.encodeproject.org/ENCBS526AQV/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: ChIP-seq from HEK293 (ENCLB845ZJJ)

description:
https://www.encodeproject.org/experiments/ENCSR801BWR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF155 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR801BWR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB845ZJJ
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF155 under the control of a CMV promoter.

value: female

value: ENCBS532LAO at ENCODE; https://www.encodeproject.org/ENCBS532LAO/


title: ChIP-seq from SK-N-SH (ENCLB423HXB)

description:
https://www.encodeproject.org/experiments/ENCSR945NFL/
***************
biological replicate number: 1
technical replicate number: 1
description: USF2 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR945NFL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000FDA
encode release date: 2017-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB423HXB
size range: 150-350

value: Metastatic neuroblastoma from bone marrow

value: ENCBS007RAH at ENCODE; https://www.encodeproject.org/ENCBS007RAH/

value: derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: DLTpcrR

city: Beijing

first: Wang

last: Fang-Fang

address: Chaoyang District, Beichen West Road, No. 1 yard

country: China

institute: Institute of Microbiology, Chinese Academy of Sciences

data_processing:
Illumina Casava1.7 software was used for basecalling.
The data was qulified and filtered before next-step. Then all clean reads were aligned to the complete genomic sequence of X. campestris pv. campestris 8004 with SOAPaligner/SOAP2.
Analysis of differentially expressed genes was performed using normalized RPKMO values by CLC Genomic Workbench for RNA-seq.
Genome_build: X. campestris pv. campestris
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each Sample ...

organism: Xanthomonas campestris pv. campestris

source_name: bacterial cells

growth_protocol: Bacterial cells were grown in XCM2 medium to OD = 0.2.

extract_protocol:
The bacterial cells were collected by centrifugation.Total RNA was extracted using Trizol (Invitrogen, Carlsbad, CA, USA) following the instructions.
The RNA libraries were constructed following the standard Illumina Protocols.

treatment_protocol: The bacterial cultures were treated with 20 μM 2iP for 30 minutes.

tag: genotype

value: pcrR in-frame deletion mutant


title: ChIP-seq from GM12878 (ENCLB813QNG)

description:
https://www.encodeproject.org/experiments/ENCSR706YUH/
***************
biological replicate number: 1
technical replicate number: 1
description: SMARCA5 ChIP-seq on human GM12878
experiment encode accession: ENCSR706YUH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB813QNG
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: unknown

value: adult

value: ENCBS397JTN at ENCODE; https://www.encodeproject.org/ENCBS397JTN/

value: derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: rpb1-FSP+,KRR+ repeat 1, ChIP [12412X1]

description:
log2 fold-enrichment file:
R3_log2FE.bw

value: Candida glabrata


title: ChIP-seq from MCF-7 (ENCLB976CBU)

description:
https://www.encodeproject.org/experiments/ENCSR702BYX/
***************
biological replicate number: 2
technical replicate number: 1
description: NFIB ChIP-seq on human MCF-7
experiment encode accession: ENCSR702BYX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB976CBU
size range: 450-650

value: NFIB

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS295JCF at ENCODE; https://www.encodeproject.org/ENCBS295JCF/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: DLTpcrS

value: pcrK in-frame deletion mutant


title: ChIP-seq from HEK293 (ENCLB049IZO)

description:
https://www.encodeproject.org/experiments/ENCSR701RXW/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF530 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR701RXW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB049IZO
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF530 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF530 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: embryonic

value: ENCBS599LKO at ENCODE; https://www.encodeproject.org/ENCBS599LKO/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB688UBJ)

description:
https://www.encodeproject.org/experiments/ENCSR701RXW/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF530 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR701RXW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB688UBJ
size range: 450-650

value: unknown

value: ENCBS976SKV at ENCODE; https://www.encodeproject.org/ENCBS976SKV/


title: WT repeat 2, ChIP [12410X5]

description:
log2 fold-enrichment file:
WT_log2FE.bw

value: WT


title: ChIP-seq from spleen (ENCLB054LWT)

description:
https://www.encodeproject.org/experiments/ENCSR800BRO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human spleen
experiment encode accession: ENCSR800BRO
assay title: ChIP-seq
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB054LWT
size range: 450-650

source_name: Homo sapiens spleen tissue female adult (51 year)

value: Control

value: spleen

value: tissue

value: 51 year

value: adult

value: ENCBS214FBD at ENCODE; https://www.encodeproject.org/ENCBS214FBD/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: WT

value: wild type


title: WT repeat 1, ChIP [12410X4]

description:
log2 fold-enrichment file:
WT_log2FE.bw

source_name: Whole yeast cells

value: Candida glabrata


title: ChIP-seq from gastroesophageal sphincter (ENCLB805ESY)

description:
https://www.encodeproject.org/experiments/ENCSR906OMM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on esophagogastric junction
experiment encode accession: ENCSR906OMM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR336ZYT
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB805ESY

source_name: Homo sapiens gastroesophageal sphincter tissue male adult (54 years)

value: gastroesophageal sphincter

value: male

value: Richard Myers, HAIB

value: 54 year

value: ENCBS046QDK at ENCODE; https://www.encodeproject.org/ENCBS046QDK/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/aefef6c9-f63e-4eb1-91a6-8a2383250cec/@@download/attachment/82359.svs


title: ChIP-seq from testis (ENCLB723UXX)

description:
https://www.encodeproject.org/experiments/ENCSR803FAP/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human testis
experiment encode accession: ENCSR803FAP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR953MEE
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB723UXX
size range: 450-650

source_name: Homo sapiens testis tissue male adult (54 years)

value: testis

value: Michael Snyder, Stanford

value: ENCBS746YNW at ENCODE; https://www.encodeproject.org/ENCBS746YNW/


title: ChIP-seq from C4-2B (ENCLB838PTL)

status: Public on Oct 23 2017

description:
https://www.encodeproject.org/experiments/ENCSR585FQO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human C4-2B
experiment encode accession: ENCSR585FQO
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB838PTL
size range: 450-650

source_name: Homo sapiens C4-2B immortalized cell line

value: Control

value: immortalized cell line

value: prostate adenocarcinoma

value: 50 year

value: ENCBS947VNK at ENCODE; https://www.encodeproject.org/ENCBS947VNK/

value: derived from ENCODE donor ENCDO000ACX; https://www.encodeproject.org/ENCDO000ACX/


title: ChIP-seq from C4-2B (ENCLB695NWD)

description:
https://www.encodeproject.org/experiments/ENCSR585FQO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human C4-2B
experiment encode accession: ENCSR585FQO
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB695NWD
size range: 450-650

value: adult

value: ENCBS109FVF at ENCODE; https://www.encodeproject.org/ENCBS109FVF/


title: WT repeat 3, ChIP [12410X6]

description:
log2 fold-enrichment file:
WT_log2FE.bw

value: Candida glabrata

value: WT


title: ChIP-seq from ovary (ENCLB464JLT)

description:
https://www.encodeproject.org/experiments/ENCSR594DIR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Thu Nov 03 2016 23:00:00 GMT-0600 (CST)
experiment encode accession: ENCSR594DIR
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB464JLT

source_name: Homo sapiens ovary tissue female adult (51 year)

value: ovary

value: tissue

value: female

value: Richard Myers, HAIB

value: 51 year

value: ENCBS751KZH at ENCODE; https://www.encodeproject.org/ENCBS751KZH/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/de0a6308-2256-4adc-b87d-dc9b32c8f938/@@download/attachment/84282.svs


title: ChIP-seq from VCaP (ENCLB904PZW)

description:
https://www.encodeproject.org/experiments/ENCSR597ULV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on human VCaP
experiment encode accession: ENCSR597ULV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR716BTZ
encode release date: 2017-04-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB904PZW
size range: 450-650

source_name: Homo sapiens VCaP immortalized cell line

value: VCaP

value: immortalized cell line

value: male

value: Michael Snyder, Stanford

value: ENCBS316RCQ at ENCODE; https://www.encodeproject.org/ENCBS316RCQ/


title: ChIP-seq from MCF-7 (ENCLB638RAR)

description:
https://www.encodeproject.org/experiments/ENCSR582ZOA/
***************
biological replicate number: 1
technical replicate number: 1
description: NFIB ChIP-seq on human MCF-7
experiment encode accession: ENCSR582ZOA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB638RAR
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: NFIB

value: adult

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS868OVR at ENCODE; https://www.encodeproject.org/ENCBS868OVR/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from VCaP (ENCLB856OBQ)

description:
https://www.encodeproject.org/experiments/ENCSR597ULV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on human VCaP
experiment encode accession: ENCSR597ULV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR716BTZ
encode release date: 2017-04-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB856OBQ
size range: 450-650

value: prostate adenocarcinoma

value: 50 year

value: ENCBS626UQL at ENCODE; https://www.encodeproject.org/ENCBS626UQL/

value: derived from ENCODE donor ENCDO000ACX; https://www.encodeproject.org/ENCDO000ACX/


title: ChIP-seq from HEK293 (ENCLB378PHZ)

description:
https://www.encodeproject.org/experiments/ENCSR586BRJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF433 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR586BRJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB378PHZ
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF433 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF433 under the control of a CMV promoter.

value: female

value: unknown

value: embryonic

value: ENCBS329NKK at ENCODE; https://www.encodeproject.org/ENCBS329NKK/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from GM12878 (ENCLB262OBN)

description:
https://www.encodeproject.org/experiments/ENCSR706YUH/
***************
biological replicate number: 2
technical replicate number: 1
description: SMARCA5 ChIP-seq on human GM12878
experiment encode accession: ENCSR706YUH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB262OBN
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: ENCBS436SAI at ENCODE; https://www.encodeproject.org/ENCBS436SAI/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: ChIP-seq from MCF-7 (ENCLB658QMK)

description:
https://www.encodeproject.org/experiments/ENCSR582ZOA/
***************
biological replicate number: 2
technical replicate number: 1
description: NFIB ChIP-seq on human MCF-7
experiment encode accession: ENCSR582ZOA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB658QMK
size range: 450-650

value: NFIB

value: adult

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS773JGQ at ENCODE; https://www.encodeproject.org/ENCBS773JGQ/


title: ChIP-seq from subcutaneous adipose tissue (ENCLB759BFP)

description:
https://www.encodeproject.org/experiments/ENCSR496OMO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human adipose tissue
experiment encode accession: ENCSR496OMO
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB759BFP
size range: 450-650

source_name: Homo sapiens subcutaneous adipose tissue female adult (51 year)

value: Control

value: subcutaneous adipose tissue

value: tissue

value: 51 year

value: ENCBS644JJL at ENCODE; https://www.encodeproject.org/ENCBS644JJL/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from lower leg skin (ENCLB307PST)

description:
https://www.encodeproject.org/experiments/ENCSR582MTM/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on human lower leg skin
experiment encode accession: ENCSR582MTM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR570HXV
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB307PST
size range: 450-650

source_name: Homo sapiens lower leg skin tissue male adult (37 years)

value: CTCF

value: lower leg skin

value: male

value: 37 year

value: ENCBS204MYN at ENCODE; https://www.encodeproject.org/ENCBS204MYN/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HEK293 (ENCLB461JCB)

description:
https://www.encodeproject.org/experiments/ENCSR497IAS/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF747 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR497IAS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB461JCB
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF747 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF747 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS456WQW at ENCODE; https://www.encodeproject.org/ENCBS456WQW/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB105AOY)

description:
https://www.encodeproject.org/experiments/ENCSR586BRJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF433 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR586BRJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB105AOY
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF433 under the control of a CMV promoter.

value: ENCBS413IZR at ENCODE; https://www.encodeproject.org/ENCBS413IZR/


title: ChIP-seq from HEK293 (ENCLB651RPN)

description:
https://www.encodeproject.org/experiments/ENCSR497IAS/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF747 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR497IAS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB651RPN
size range: 450-650

value: ENCBS956LCM at ENCODE; https://www.encodeproject.org/ENCBS956LCM/


title: ChIP-seq from stomach (ENCLB889CDA)

description:
https://www.encodeproject.org/experiments/ENCSR573WYW/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on stomach
experiment encode accession: ENCSR573WYW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR516EKI
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB889CDA

source_name: Homo sapiens stomach tissue female adult (53 years)

value: stomach

value: tissue

value: Richard Myers, HAIB

value: 53 year

value: adult

value: ENCBS829SAQ at ENCODE; https://www.encodeproject.org/ENCBS829SAQ/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/a307e129-388c-445e-b260-f655a14237dc/@@download/attachment/83401.svs


title: ChIP-seq from lower leg skin (ENCLB829KKQ)

description:
https://www.encodeproject.org/experiments/ENCSR570HXV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human lower leg skin
experiment encode accession: ENCSR570HXV
assay title: ChIP-seq
encode release date: 2016-11-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB829KKQ
size range: 450-650

value: Control

value: lower leg skin

value: male

value: 37 year

value: ENCBS204MYN at ENCODE; https://www.encodeproject.org/ENCBS204MYN/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from stomach (ENCLB338AYQ)

description:
https://www.encodeproject.org/experiments/ENCSR493PYN/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Tue Aug 30 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR493PYN
assay title: ChIP-seq
encode release date: 2016-11-09
lab: Richard Myers, HAIB
library encode accession: ENCLB338AYQ

value: female


title: ChIP-seq from tibial nerve (ENCLB050YTS)

description:
https://www.encodeproject.org/experiments/ENCSR580XUK/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on tibial nerve
experiment encode accession: ENCSR580XUK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR846VRM
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB050YTS

source_name: Homo sapiens tibial nerve tissue male adult (37 years)

value: tibial nerve

value: ENCBS182BFY at ENCODE; https://www.encodeproject.org/ENCBS182BFY/


title: ChIP-seq from MCF-7 (ENCLB786OUA)

description:
https://www.encodeproject.org/experiments/ENCSR573OJP/
***************
biological replicate number: 2
technical replicate number: 1
description: NCOA3 ChIP-seq on human MCF-7
experiment encode accession: ENCSR573OJP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB786OUA
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS448KAT at ENCODE; https://www.encodeproject.org/ENCBS448KAT/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from MCF-7 (ENCLB859HNT)

description:
https://www.encodeproject.org/experiments/ENCSR569XNP/
***************
biological replicate number: 1
technical replicate number: 1
description: FOS ChIP-seq on human MCF-7
experiment encode accession: ENCSR569XNP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB859HNT
size range: 450-650

value: FOS

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: adult

value: ENCBS168ISE at ENCODE; https://www.encodeproject.org/ENCBS168ISE/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from thyroid gland (ENCLB371YCO)

description:
https://www.encodeproject.org/experiments/ENCSR492ZIW/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human thyroid gland
experiment encode accession: ENCSR492ZIW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR975JIE
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB371YCO
size range: 450-650

source_name: Homo sapiens thyroid gland tissue male adult (54 years)

value: CTCF

value: thyroid gland

value: tissue

value: male

value: 54 year

value: ENCBS995JJM at ENCODE; https://www.encodeproject.org/ENCBS995JJM/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from MCF-7 (ENCLB200WLX)

description:
https://www.encodeproject.org/experiments/ENCSR569XNP/
***************
biological replicate number: 3
technical replicate number: 1
description: FOS ChIP-seq on human MCF-7
experiment encode accession: ENCSR569XNP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB200WLX
size range: 450-650

value: immortalized cell line

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: Michael Snyder, Stanford

value: ENCBS053YJT at ENCODE; https://www.encodeproject.org/ENCBS053YJT/


title: ChIP-seq from K562 (ENCLB593HMA)

description:
https://www.encodeproject.org/experiments/ENCSR491EBY/
***************
biological replicate number: 2
technical replicate number: 1
description: ARID2 ChIP-seq on human K562
experiment encode accession: ENCSR491EBY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB593HMA
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS185MQS at ENCODE; https://www.encodeproject.org/ENCBS185MQS/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB051CXN)

description:
https://www.encodeproject.org/experiments/ENCSR492LTS/
***************
biological replicate number: 1
technical replicate number: 1
description: BCLAF1 ChIP-seq on human K562
experiment encode accession: ENCSR492LTS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-02-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB051CXN
size range: 450-650

value: ENCBS664NTU at ENCODE; https://www.encodeproject.org/ENCBS664NTU/


title: ChIP-seq from K562 (ENCLB712HGK)

description:
https://www.encodeproject.org/experiments/ENCSR492LTS/
***************
biological replicate number: 2
technical replicate number: 1
description: BCLAF1 ChIP-seq on human K562
experiment encode accession: ENCSR492LTS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-02-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB712HGK
size range: 450-650

value: ENCBS357NWO at ENCODE; https://www.encodeproject.org/ENCBS357NWO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB427FQR)

description:
https://www.encodeproject.org/experiments/ENCSR491EBY/
***************
biological replicate number: 1
technical replicate number: 1
description: ARID2 ChIP-seq on human K562
experiment encode accession: ENCSR491EBY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB427FQR
size range: 450-650

value: ENCBS352MRW at ENCODE; https://www.encodeproject.org/ENCBS352MRW/


title: ChIP-seq from tibial nerve (ENCLB938TZL)

description:
https://www.encodeproject.org/experiments/ENCSR569SZK/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on tibial nerve
experiment encode accession: ENCSR569SZK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR889VXP
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB938TZL

source_name: Homo sapiens tibial nerve tissue female adult (51 year)

value: tibial nerve

value: tissue

value: Richard Myers, HAIB

value: 51 year

value: ENCBS842RPA at ENCODE; https://www.encodeproject.org/ENCBS842RPA/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/2bf62bc0-22fd-41ea-89c9-a84c756bcc30/@@download/attachment/84263.svs


title: ChIP-seq from transverse colon (ENCLB821YPN)

description:
https://www.encodeproject.org/experiments/ENCSR567EKU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human transverse colon
experiment encode accession: ENCSR567EKU
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB821YPN
size range: 450-650

source_name: Homo sapiens transverse colon tissue female adult (53 years)

value: Control

value: transverse colon

value: female

value: Michael Snyder, Stanford

value: ENCBS659AMF at ENCODE; https://www.encodeproject.org/ENCBS659AMF/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from K562 (ENCLB238BOS)

description:
https://www.encodeproject.org/experiments/ENCSR490LWA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-CEBPG ChIP-seq on human K562
experiment encode accession: ENCSR490LWA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR159MTA
encode release date: 2017-04-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB238BOS

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-CEBPG fusion protein

value: eGFP-CEBPG

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to CEBPG

value: Kevin White, UChicago

tag: passage number

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS788JQH at ENCODE; https://www.encodeproject.org/ENCBS788JQH/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ77; http://web.expasy.org/cellosaurus/CVCL_GZ77


title: ChIP-seq from stomach (ENCLB377SDN)

description:
https://www.encodeproject.org/experiments/ENCSR488BXS/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human stomach
experiment encode accession: ENCSR488BXS
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB377SDN
size range: 450-650

value: stomach

value: tissue

value: ENCBS296KUN at ENCODE; https://www.encodeproject.org/ENCBS296KUN/


title: Hi-C from NCI-H460 (ENCLB118KAE)

description:
https://www.encodeproject.org/experiments/ENCSR489OCU/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on NCI-H460
experiment encode accession: ENCSR489OCU
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB118KAE

source_name: Homo sapiens NCI-H460 immortalized cell line

value: 37 year

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS514AAA at ENCODE; https://www.encodeproject.org/ENCBS514AAA/

value: Derived from ENCODE donor ENCDO337AAA; https://www.encodeproject.org/ENCDO337AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0459; http://web.expasy.org/cellosaurus/CVCL_0459


title: Hi-C from NCI-H460 (ENCLB104ZTM)

description:
https://www.encodeproject.org/experiments/ENCSR489OCU/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on NCI-H460
experiment encode accession: ENCSR489OCU
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB104ZTM

value: immortalized cell line

value: carcinoma; large cell lung cancer

value: unknown

value: ENCBS686KKP at ENCODE; https://www.encodeproject.org/ENCBS686KKP/

value: derived from ENCODE donor ENCDO267PTG; https://www.encodeproject.org/ENCDO267PTG/


title: ChIP-seq from MCF-7 (ENCLB328RKT)

description:
https://www.encodeproject.org/experiments/ENCSR573OJP/
***************
biological replicate number: 1
technical replicate number: 1
description: NCOA3 ChIP-seq on human MCF-7
experiment encode accession: ENCSR573OJP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB328RKT
size range: 450-650

value: adult

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: Michael Snyder, Stanford

value: ENCBS050QMU at ENCODE; https://www.encodeproject.org/ENCBS050QMU/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from spleen (ENCLB951RXS)

description:
https://www.encodeproject.org/experiments/ENCSR485ITK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human spleen
experiment encode accession: ENCSR485ITK
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB951RXS
size range: 450-650

source_name: Homo sapiens spleen tissue male adult (54 years)

value: Control

value: spleen

value: tissue

value: male

value: 54 year

value: ENCBS009ALA at ENCODE; https://www.encodeproject.org/ENCBS009ALA/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from HEK293 (ENCLB394XJG)

description:
https://www.encodeproject.org/experiments/ENCSR564YYW/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF157 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR564YYW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB394XJG
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF157 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF157 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS436OCK at ENCODE; https://www.encodeproject.org/ENCBS436OCK/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from A549 (ENCLB276VMN)

description:
https://www.encodeproject.org/experiments/ENCSR563FBT/
***************
biological replicate number: 3
technical replicate number: 1
description: USF2 ChIP-seq on human A549
experiment encode accession: ENCSR563FBT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB276VMN
size range: 450-650

source_name: Homo sapiens A549 immortalized cell line

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: ENCBS611JSC at ENCODE; https://www.encodeproject.org/ENCBS611JSC/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from HEK293 (ENCLB468RUG)

description:
https://www.encodeproject.org/experiments/ENCSR564YYW/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF157 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR564YYW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB468RUG
size range: 450-650

value: female

value: ENCBS126YNT at ENCODE; https://www.encodeproject.org/ENCBS126YNT/


title: ChIP-seq from K562 (ENCLB809EWT)

description:
https://www.encodeproject.org/experiments/ENCSR563LLO/
***************
biological replicate number: 1
technical replicate number: 1
description: E2F1 ChIP-seq on human K562
experiment encode accession: ENCSR563LLO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB809EWT
size range: 450-650

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS697XFI at ENCODE; https://www.encodeproject.org/ENCBS697XFI/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from transverse colon (ENCLB787SFB)

description:
https://www.encodeproject.org/experiments/ENCSR558HTE/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human transverse colon
experiment encode accession: ENCSR558HTE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR457NQR
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB787SFB
size range: 450-650

source_name: Homo sapiens transverse colon tissue female adult (51 year)

value: CTCF

value: transverse colon

value: tissue

value: 51 year

value: ENCBS360EPF at ENCODE; https://www.encodeproject.org/ENCBS360EPF/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: Hi-C from endometrial microvascular endothelial cells (ENCLB261ACF)

description:
https://www.encodeproject.org/experiments/ENCSR551IPY/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on endometrial microvascular endothelial cells
experiment encode accession: ENCSR551IPY
assay title: Hi-C
assembly: hg19
encode release date: 2017-08-15
lab: Job Dekker, UMass
library encode accession: ENCLB261ACF

source_name: Homo sapiens endometrial microvascular endothelial cells primary cell

value: primary cell

value: not collected

value: John Stamatoyannopoulos, UW

value: unknown

value: ENCBS183PHZ at ENCODE; https://www.encodeproject.org/ENCBS183PHZ/

value: derived from ENCODE donor ENCDO005CEJ; https://www.encodeproject.org/ENCDO005CEJ/


title: Hi-C from endometrial microvascular endothelial cells (ENCLB709EBB)

description:
https://www.encodeproject.org/experiments/ENCSR551IPY/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on endometrial microvascular endothelial cells
experiment encode accession: ENCSR551IPY
assay title: Hi-C
assembly: hg19
encode release date: 2017-08-15
lab: Job Dekker, UMass
library encode accession: ENCLB709EBB

value: ENCBS279DHR at ENCODE; https://www.encodeproject.org/ENCBS279DHR/


title: ChIP-seq from HEK293 (ENCLB585BQF)

description:
https://www.encodeproject.org/experiments/ENCSR550ZZK/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF493 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR550ZZK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB585BQF
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF493 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF493 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: embryonic

value: ENCBS269SYD at ENCODE; https://www.encodeproject.org/ENCBS269SYD/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB805SUJ)

description:
https://www.encodeproject.org/experiments/ENCSR598TIR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF507 ChIP-seq on human K562
experiment encode accession: ENCSR598TIR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR068GPE
encode release date: 2017-02-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB805SUJ

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF507 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF507

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS466GBM at ENCODE; https://www.encodeproject.org/ENCBS466GBM/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB013HZL)

description:
https://www.encodeproject.org/experiments/ENCSR699PVC/
***************
biological replicate number: 1
technical replicate number: 1
description: CBFA2T2 ChIP-seq on human K562
experiment encode accession: ENCSR699PVC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB013HZL
size range: 450-650

value: ENCBS538DYC at ENCODE; https://www.encodeproject.org/ENCBS538DYC/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB250QWI)

description:
https://www.encodeproject.org/experiments/ENCSR563LLO/
***************
biological replicate number: 2
technical replicate number: 1
description: E2F1 ChIP-seq on human K562
experiment encode accession: ENCSR563LLO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB250QWI
size range: 450-650

value: ENCBS288EEL at ENCODE; https://www.encodeproject.org/ENCBS288EEL/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB115LID)

description:
https://www.encodeproject.org/experiments/ENCSR598TIR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF507 ChIP-seq on human K562
experiment encode accession: ENCSR598TIR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR068GPE
encode release date: 2017-02-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB115LID

value: immortalized cell line

value: ENCBS042PVO at ENCODE; https://www.encodeproject.org/ENCBS042PVO/


title: ChIP-seq from K562 (ENCLB366UYZ)

description:
https://www.encodeproject.org/experiments/ENCSR490LWA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-CEBPG ChIP-seq on human K562
experiment encode accession: ENCSR490LWA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR159MTA
encode release date: 2017-04-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB366UYZ

value: eGFP-CEBPG

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to CEBPG

value: female

value: ENCBS274CBC at ENCODE; https://www.encodeproject.org/ENCBS274CBC/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ77; http://web.expasy.org/cellosaurus/CVCL_GZ77


title: ChIP-seq from HEK293 (ENCLB809CVQ)

description:
https://www.encodeproject.org/experiments/ENCSR550ZZK/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF493 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR550ZZK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB809CVQ
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF493 under the control of a CMV promoter.

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS692PCT at ENCODE; https://www.encodeproject.org/ENCBS692PCT/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from gastroesophageal sphincter (ENCLB032HYI)

description:
https://www.encodeproject.org/experiments/ENCSR551MLB/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on esophagogastric junction
experiment encode accession: ENCSR551MLB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR976KYQ
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB032HYI

source_name: Homo sapiens gastroesophageal sphincter tissue male adult (37 years)

value: gastroesophageal sphincter

value: tissue

value: male

value: Richard Myers, HAIB

value: 37 year

value: adult

value: ENCBS057FSI at ENCODE; https://www.encodeproject.org/ENCBS057FSI/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from Peyer's patch (ENCLB687RJE)

description:
https://www.encodeproject.org/experiments/ENCSR588APY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human Peyer's patch
experiment encode accession: ENCSR588APY
assay title: ChIP-seq
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB687RJE
size range: 450-650

source_name: Homo sapiens Peyer's patch tissue female adult (53 years)

value: Control

value: Peyer's patch

value: female

value: 53 year

value: ENCBS944UJX at ENCODE; https://www.encodeproject.org/ENCBS944UJX/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from K562 (ENCLB402DVN)

description:
https://www.encodeproject.org/experiments/ENCSR699PVC/
***************
biological replicate number: 2
technical replicate number: 1
description: CBFA2T2 ChIP-seq on human K562
experiment encode accession: ENCSR699PVC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB402DVN
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS562NAQ at ENCODE; https://www.encodeproject.org/ENCBS562NAQ/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB808HIQ)

description:
https://www.encodeproject.org/experiments/ENCSR697YLJ/
***************
biological replicate number: 2
technical replicate number: 1
description: CBFA2T3 ChIP-seq on human K562
experiment encode accession: ENCSR697YLJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB808HIQ
size range: 450-650


title: ChIP-seq from ovary (ENCLB285SPD)

description:
https://www.encodeproject.org/experiments/ENCSR696LQU/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on female gonad
experiment encode accession: ENCSR696LQU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255HLM
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB285SPD

source_name: Homo sapiens ovary tissue female adult (53 years)

value: ovary

value: tissue

value: ENCBS874ZKQ at ENCODE; https://www.encodeproject.org/ENCBS874ZKQ/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/76117c8f-427c-46a3-83e7-06a793af0684/@@download/attachment/83379.svs


title: ChIP-seq from stomach (ENCLB131MAQ)

description:
https://www.encodeproject.org/experiments/ENCSR549WAU/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human stomach
experiment encode accession: ENCSR549WAU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR081KET
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB131MAQ
size range: 450-650

source_name: Homo sapiens stomach tissue male adult (54 years)

value: CTCF

value: stomach

value: male

value: 54 year

value: adult

value: ENCBS424ANS at ENCODE; https://www.encodeproject.org/ENCBS424ANS/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from K562 (ENCLB510SZJ)

description:
https://www.encodeproject.org/experiments/ENCSR697YLJ/
***************
biological replicate number: 1
technical replicate number: 1
description: CBFA2T3 ChIP-seq on human K562
experiment encode accession: ENCSR697YLJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB510SZJ
size range: 450-650

value: 53 year

value: female

value: ENCBS538DYC at ENCODE; https://www.encodeproject.org/ENCBS538DYC/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from A549 (ENCLB106SWR)

description:
https://www.encodeproject.org/experiments/ENCSR563FBT/
***************
biological replicate number: 2
technical replicate number: 1
description: USF2 ChIP-seq on human A549
experiment encode accession: ENCSR563FBT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB106SWR
size range: 450-650

value: immortalized cell line

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: 58 year

value: Michael Snyder, Stanford

value: ENCBS848SUF at ENCODE; https://www.encodeproject.org/ENCBS848SUF/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from Peyer's patch (ENCLB575QVC)

description:
https://www.encodeproject.org/experiments/ENCSR584RZY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human Peyer's patch
experiment encode accession: ENCSR584RZY
assay title: ChIP-seq
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB575QVC
size range: 450-650

source_name: Homo sapiens Peyer's patch tissue female adult (51 year)

value: Control

value: Peyer's patch

value: tissue

value: 51 year

value: ENCBS666LQH at ENCODE; https://www.encodeproject.org/ENCBS666LQH/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from prostate gland (ENCLB154WFB)

description:
https://www.encodeproject.org/experiments/ENCSR499JBP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human prostate gland
experiment encode accession: ENCSR499JBP
assay title: ChIP-seq
encode release date: 2017-03-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB154WFB
size range: 450-650

source_name: Homo sapiens prostate gland tissue male adult (54 years)

value: prostate gland

value: male

value: 54 year

value: adult

value: ENCBS400XYQ at ENCODE; https://www.encodeproject.org/ENCBS400XYQ/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from esophagus squamous epithelium (ENCLB236VGX)

description:
https://www.encodeproject.org/experiments/ENCSR581RPO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human esophagus squamous epithelium
experiment encode accession: ENCSR581RPO
assay title: ChIP-seq
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB236VGX
size range: 450-650

source_name: Homo sapiens esophagus squamous epithelium tissue male adult (54 years)

value: esophagus squamous epithelium

value: Michael Snyder, Stanford

value: ENCBS278PSF at ENCODE; https://www.encodeproject.org/ENCBS278PSF/


title: ChIP-seq from K562 (ENCLB952HQO)

description:
https://www.encodeproject.org/experiments/ENCSR695EQB/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF24 ChIP-seq on human K562
experiment encode accession: ENCSR695EQB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2017-01-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB952HQO
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: immortalized cell line

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS719UQU at ENCODE; https://www.encodeproject.org/ENCBS719UQU/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from upper lobe of left lung (ENCLB428CJV)

description:
https://www.encodeproject.org/experiments/ENCSR492GDK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human upper lobe of left lung
experiment encode accession: ENCSR492GDK
assay title: ChIP-seq
encode release date: 2016-12-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB428CJV
size range: 450-650

source_name: Homo sapiens upper lobe of left lung tissue female adult (53 years)

value: Control

value: upper lobe of left lung

value: tissue

value: ENCBS218BVZ at ENCODE; https://www.encodeproject.org/ENCBS218BVZ/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from HEK293 (ENCLB496TYX)

description:
https://www.encodeproject.org/experiments/ENCSR547TGL/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF701 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR547TGL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB496TYX
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF701 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF701 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS846SLU at ENCODE; https://www.encodeproject.org/ENCBS846SLU/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from spleen (ENCLB178RBF)

description:
https://www.encodeproject.org/experiments/ENCSR692ILH/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human spleen
experiment encode accession: ENCSR692ILH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR819SSW
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB178RBF
size range: 450-650

source_name: Homo sapiens spleen tissue female adult (53 years)

value: CTCF

value: spleen

value: Michael Snyder, Stanford

value: adult

value: ENCBS440AZZ at ENCODE; https://www.encodeproject.org/ENCBS440AZZ/


title: ChIP-seq from ovary (ENCLB026GMS)

description:
https://www.encodeproject.org/experiments/ENCSR493APD/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human ovary
experiment encode accession: ENCSR493APD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR628RAE
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB026GMS
size range: 450-650

value: ovary

value: female

value: 53 year

value: ENCBS165BJP at ENCODE; https://www.encodeproject.org/ENCBS165BJP/


title: ChIP-seq from HEK293 (ENCLB886RSQ)

description:
https://www.encodeproject.org/experiments/ENCSR567XAM/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF473 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR567XAM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB886RSQ
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF473 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF473 under the control of a CMV promoter.

value: ENCBS954TGQ at ENCODE; https://www.encodeproject.org/ENCBS954TGQ/


title: ChIP-seq from omental fat pad (ENCLB267LWH)

description:
https://www.encodeproject.org/experiments/ENCSR483JPG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Wed Aug 24 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR483JPG
assay title: ChIP-seq
encode release date: 2016-11-09
lab: Richard Myers, HAIB
library encode accession: ENCLB267LWH

source_name: Homo sapiens omental fat pad tissue female adult (53 years)

value: Control

value: omental fat pad

value: tissue

value: Richard Myers, HAIB

value: ENCBS179COH at ENCODE; https://www.encodeproject.org/ENCBS179COH/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/9a5eed1e-59fb-47b1-8847-be2fffec340f/@@download/attachment/83376.svs


title: ChIP-seq from HEK293 (ENCLB956ALA)

description:
https://www.encodeproject.org/experiments/ENCSR692HSE/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-YY2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR692HSE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB956ALA
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-YY2 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-YY2 under the control of a CMV promoter.

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS828IPH at ENCODE; https://www.encodeproject.org/ENCBS828IPH/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from testis (ENCLB045MCC)

description:
https://www.encodeproject.org/experiments/ENCSR494TNM/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human testis
experiment encode accession: ENCSR494TNM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR036LUN
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB045MCC
size range: 450-650

source_name: Homo sapiens testis tissue male adult (37 years)

value: CTCF

value: testis

value: male

value: 37 year

value: adult

value: ENCBS133MOQ at ENCODE; https://www.encodeproject.org/ENCBS133MOQ/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HEK293 (ENCLB633LUB)

description:
https://www.encodeproject.org/experiments/ENCSR692HSE/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-YY2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR692HSE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB633LUB
size range: 450-650

value: immortalized cell line

value: female

value: ENCBS957THJ at ENCODE; https://www.encodeproject.org/ENCBS957THJ/


title: ChIP-seq from K562 (ENCLB067MHI)

description:
https://www.encodeproject.org/experiments/ENCSR479QAJ/
***************
biological replicate number: 1
technical replicate number: 1
description: U2AF2 ChIP-seq in K562
experiment encode accession: ENCSR479QAJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR966DOU
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB067MHI
size range: 200-400

value: U2AF2 ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS425BSQ at ENCODE; https://www.encodeproject.org/ENCBS425BSQ/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from spleen (ENCLB553FIN)

description:
https://www.encodeproject.org/experiments/ENCSR482PMN/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human spleen
experiment encode accession: ENCSR482PMN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR728EBP
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB553FIN
size range: 450-650

source_name: Homo sapiens spleen tissue female adult (51 year)

value: spleen

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS214FBD at ENCODE; https://www.encodeproject.org/ENCBS214FBD/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from vagina (ENCLB121WQE)

description:
https://www.encodeproject.org/experiments/ENCSR558QYH/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human vagina
experiment encode accession: ENCSR558QYH
assay title: ChIP-seq
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB121WQE
size range: 450-650

source_name: Homo sapiens vagina tissue female adult (53 years)

value: Control

value: vagina

value: adult

value: ENCBS762FDB at ENCODE; https://www.encodeproject.org/ENCBS762FDB/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from prostate gland (ENCLB103BZA)

description:
https://www.encodeproject.org/experiments/ENCSR689LFI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Sun Oct 30 2016 23:00:00 GMT-0600 (CST)
experiment encode accession: ENCSR689LFI
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB103BZA

source_name: Homo sapiens prostate gland tissue male adult (37 years)

value: prostate gland

value: male

value: Richard Myers, HAIB

value: 37 year

value: ENCBS720KJI at ENCODE; https://www.encodeproject.org/ENCBS720KJI/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HepG2 (ENCLB588QHL)

description:
https://www.encodeproject.org/experiments/ENCSR476BQA/
***************
biological replicate number: 1
technical replicate number: 1
description: NONO ChIP-seq on human HepG2
experiment encode accession: ENCSR476BQA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2017-02-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB588QHL
size range: 450-650

source_name: Homo sapiens HepG2 immortalized cell line

value: NONO

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS157PJQ at ENCODE; https://www.encodeproject.org/ENCBS157PJQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from MCF-7 (ENCLB091XAR)

description:
https://www.encodeproject.org/experiments/ENCSR487ASM/
***************
biological replicate number: 1
technical replicate number: 1
description: SMARCA5 ChIP-seq on human MCF-7
experiment encode accession: ENCSR487ASM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB091XAR
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: female

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS242FXL at ENCODE; https://www.encodeproject.org/ENCBS242FXL/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from HEK293 (ENCLB488OCU)

description:
https://www.encodeproject.org/experiments/ENCSR567XAM/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF473 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR567XAM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB488OCU
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF473 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS387OFW at ENCODE; https://www.encodeproject.org/ENCBS387OFW/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from MCF-7 (ENCLB835DDD)

description:
https://www.encodeproject.org/experiments/ENCSR487ASM/
***************
biological replicate number: 2
technical replicate number: 1
description: SMARCA5 ChIP-seq on human MCF-7
experiment encode accession: ENCSR487ASM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB835DDD
size range: 450-650

value: immortalized cell line

value: adult

value: ENCBS758TZQ at ENCODE; https://www.encodeproject.org/ENCBS758TZQ/