title: ChIP-seq from HepG2 (ENCLB784EBU)

description:
https://www.encodeproject.org/experiments/ENCSR497JLX/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR497JLX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB784EBU

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-TEAD1 fusion protein, C-terminal FLAG-TEAD1 fusion protein

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS662EIQ at ENCODE; https://www.encodeproject.org/ENCBS662EIQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB726VOB)

status: Public on Mar 12 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR497JLX/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR497JLX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB726VOB

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

tag: antibody

tag: line

value: immortalized cell line

tag: biosample encode accession

tag: dev stage

tag: Sex

value: male

tag: age

tag: health state

tag: lab

tag: link

value: ENCBS536GGE at ENCODE; https://www.encodeproject.org/ENCBS536GGE/


title: ChIP-seq from HepG2 (ENCLB859TJE)

description:
https://www.encodeproject.org/experiments/ENCSR487CPI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR487CPI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB859TJE

source_name: Homo sapiens HepG2 immortalized cell line

value: ENCBS379GSU at ENCODE; https://www.encodeproject.org/ENCBS379GSU/


title: ChIP-seq from neural progenitor cell (ENCLB873ZLW)

description:
https://www.encodeproject.org/experiments/ENCSR449AXO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR449AXO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB873ZLW
size range: 200-600

source_name: Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9

value: neural progenitor cell

value: in vitro differentiated cells

tag: description

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from PC-9 (ENCLB134BRC)

description:
https://www.encodeproject.org/experiments/ENCSR491WAP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR491WAP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2017-01-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB134BRC
size range: 200-600

source_name: Homo sapiens PC-9 immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from hepatocyte (ENCLB688QTT)

description:
https://www.encodeproject.org/experiments/ENCSR442ZOI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR442ZOI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB688QTT
size range: 200-600
nucleic acid starting quantity: 99
nucleic acid starting quantity units: ng

source_name: Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

value: hepatocyte

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: Richard Myers, HAIB

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/


title: ChIP-seq from liver (ENCLB516KWE)

description:
https://www.encodeproject.org/experiments/ENCSR480LIS/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on ATF3-human
experiment encode accession: ENCSR480LIS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2016-03-31
lab: Richard Myers, HAIB
library encode accession: ENCLB516KWE

source_name: Homo sapiens liver tissue male adult (32 years)

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from HepG2 (ENCLB775OIW)

description:
https://www.encodeproject.org/experiments/ENCSR487CPI/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR487CPI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB775OIW

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS225EED at ENCODE; https://www.encodeproject.org/ENCBS225EED/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from radial glial cell (ENCLB382PBQ)

description:
https://www.encodeproject.org/experiments/ENCSR433PUR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR433PUR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR689ICI
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB382PBQ
size range: 200-600

source_name: Homo sapiens radial glial in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein

value: radial glial cell

value: in vitro differentiated cells

value: Early Radial Glia were collected at day 14 of differentiation (see protocol)

value: embryonic

value: female

value: 5 day

value: healthy

tag: passage number

value: Bradley Bernstein, Broad

value: ENCBS008AOU at ENCODE; https://www.encodeproject.org/ENCBS008AOU/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from Loucy (ENCLB977ZQC)

description:
https://www.encodeproject.org/experiments/ENCSR543IKB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR543IKB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB977ZQC
size range: 200-600

source_name: Homo sapiens Loucy immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/61c0d277-54c3-4e17-afcd-4059b22d89f6/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v09.1.pdf

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS708EFA at ENCODE; https://www.encodeproject.org/ENCBS708EFA/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from liver (ENCLB388CBL)

description:
https://www.encodeproject.org/experiments/ENCSR480LIS/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on ATF3-human
experiment encode accession: ENCSR480LIS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2016-03-31
lab: Richard Myers, HAIB
library encode accession: ENCLB388CBL

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from SK-N-SH (ENCLB288IVO)

description:
https://www.encodeproject.org/experiments/ENCSR423UOT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR423UOT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB288IVO
size range: 200-600

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: immortalized cell line

value: 4 year

value: child

value: female

value: Bradley Bernstein, Broad

value: ENCBS500EWH at ENCODE; https://www.encodeproject.org/ENCBS500EWH/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from breast epithelium (ENCLB744YZD)

description:
https://www.encodeproject.org/experiments/ENCSR416AUW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR416AUW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR247XFQ
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB744YZD
size range: 200-600

source_name: Homo sapiens breast epithelium tissue female adult (53 years)

value: breast epithelium

value: tissue

value: EnTEX:Breast - Mammary Tissue

value: adult

value: 53 year

value: ENCBS433LAO at ENCODE; https://www.encodeproject.org/ENCBS433LAO/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from PC-9 (ENCLB487USW)

description:
https://www.encodeproject.org/experiments/ENCSR441JWF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR441JWF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB487USW
size range: 200-600

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: ENCBS987JQH at ENCODE; https://www.encodeproject.org/ENCBS987JQH/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from thoracic aorta (ENCLB830KBX)

description:
https://www.encodeproject.org/experiments/ENCSR416CYZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR416CYZ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR266XMB
encode release date: 2016-10-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB830KBX
size range: 200-600
nucleic acid starting quantity: 326.7
nucleic acid starting quantity units: ng

source_name: Homo sapiens thoracic aorta tissue male adult (54 years)

value: thoracic aorta

value: EnTEX:Artery- Aorta

value: male

value: 54 year

value: Bradley Bernstein, Broad

value: ENCBS703OTV at ENCODE; https://www.encodeproject.org/ENCBS703OTV/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from thoracic aorta (ENCLB836PAN)

description:
https://www.encodeproject.org/experiments/ENCSR416CYZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR416CYZ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR266XMB
encode release date: 2016-10-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB836PAN
size range: 200-600
nucleic acid starting quantity: 326.7
nucleic acid starting quantity units: ng

value: tissue

value: adult


title: ChIP-seq from HepG2 (ENCLB747QUE)

description:
https://www.encodeproject.org/experiments/ENCSR462KYU/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR462KYU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB747QUE

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-GABPB1_isoform2 fusion protein, C-terminal FLAG-GABPB1_isoform2 fusion protein

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS376BLQ at ENCODE; https://www.encodeproject.org/ENCBS376BLQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from breast epithelium (ENCLB837ISF)

description:
https://www.encodeproject.org/experiments/ENCSR416AUW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR416AUW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR247XFQ
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB837ISF
size range: 200-600

value: breast epithelium

value: EnTEX:Breast - Mammary Tissue

value: female

value: 53 year

value: ENCBS433LAO at ENCODE; https://www.encodeproject.org/ENCBS433LAO/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from NCI-H929 (ENCLB014IRB)

description:
https://www.encodeproject.org/experiments/ENCSR409FGC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR409FGC
assay title: ChIP-seq
encode release date: 2016-10-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB014IRB
size range: 200-600

source_name: Homo sapiens NCI-H929 immortalized cell line

value: Control

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: 62 year

value: multiple myeloma

value: Bradley Bernstein, Broad

value: ENCBS197CBA at ENCODE; https://www.encodeproject.org/ENCBS197CBA/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from neural progenitor cell (ENCLB953HPX)

description:
https://www.encodeproject.org/experiments/ENCSR449AXO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR449AXO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB953HPX
size range: 200-600
nucleic acid starting quantity: 88.88
nucleic acid starting quantity units: ng

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: healthy

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from HepG2 (ENCLB240FQM)

description:
https://www.encodeproject.org/experiments/ENCSR455DOO/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR455DOO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB240FQM

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-RCOR2 fusion protein, C-terminal FLAG-RCOR2 fusion protein

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS957VMX at ENCODE; https://www.encodeproject.org/ENCBS957VMX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from induced pluripotent stem cell (ENCLB818SEQ)

description:
https://www.encodeproject.org/experiments/ENCSR447FVP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on PGP1 iPSC-human (fragmentation date: 2015-09-03)
experiment encode accession: ENCSR447FVP
assay title: ChIP-seq
encode release date: 2016-01-14
lab: Richard Myers, HAIB
library encode accession: ENCLB818SEQ

source_name: Homo sapiens induced pluripotent stem cell line male adult (53 years) derived from fibroblast of arm

value: Control

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from hepatocyte (ENCLB167ZLU)

description:
https://www.encodeproject.org/experiments/ENCSR442ZOI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR442ZOI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB167ZLU
size range: 200-600

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from HepG2 (ENCLB912EJJ)

description:
https://www.encodeproject.org/experiments/ENCSR462KYU/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR462KYU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB912EJJ

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS290GVX at ENCODE; https://www.encodeproject.org/ENCBS290GVX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from liver (ENCLB105DUQ)

description:
https://www.encodeproject.org/experiments/ENCSR445QRF/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HNF4A-human
experiment encode accession: ENCSR445QRF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR443AIH
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB105DUQ

source_name: Homo sapiens liver tissue female child (4 years)

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from adrenal gland (ENCLB210SLF)

description:
https://www.encodeproject.org/experiments/ENCSR406PCK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR406PCK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR828HXJ
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB210SLF
size range: 200-600

source_name: Homo sapiens adrenal gland tissue male adult (54 years)

value: adrenal gland

value: EnTEX:Adrenal Gland

value: adult

value: 54 year

value: Bradley Bernstein, Broad

value: ENCBS078MQQ at ENCODE; https://www.encodeproject.org/ENCBS078MQQ/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from adrenal gland (ENCLB852PMQ)

description:
https://www.encodeproject.org/experiments/ENCSR406PCK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR406PCK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR828HXJ
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB852PMQ
size range: 200-600

value: male


title: ChIP-seq from MM.1S (ENCLB506NTI)

description:
https://www.encodeproject.org/experiments/ENCSR404LJZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR404LJZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB506NTI
size range: 300-600
nucleic acid starting quantity: 6.256
nucleic acid starting quantity units: ng

source_name: Homo sapiens MM.1S immortalized cell line

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS981ZAE at ENCODE; https://www.encodeproject.org/ENCBS981ZAE/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from NCI-H929 (ENCLB001MNW)

description:
https://www.encodeproject.org/experiments/ENCSR409FGC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR409FGC
assay title: ChIP-seq
encode release date: 2016-10-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB001MNW
size range: 200-600

value: Control

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: 62 year

value: multiple myeloma

value: ENCBS571AQH at ENCODE; https://www.encodeproject.org/ENCBS571AQH/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from HepG2 (ENCLB777XNT)

description:
https://www.encodeproject.org/experiments/ENCSR445ACU/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2-human
experiment encode accession: ENCSR445ACU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR855LCA, ENCSR240FKS
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB777XNT

source_name: Homo sapiens HepG2 immortalized cell line

value: HepG2, hepatocellular carcinoma

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from MM.1S (ENCLB061HGO)

description:
https://www.encodeproject.org/experiments/ENCSR404LJZ/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR404LJZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB061HGO
size range: 300-600
nucleic acid starting quantity: 41.14
nucleic acid starting quantity units: ng

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: Bradley Bernstein, Broad

value: ENCBS241TLI at ENCODE; https://www.encodeproject.org/ENCBS241TLI/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/


title: ChIP-seq from HepG2 (ENCLB977SCN)

description:
https://www.encodeproject.org/experiments/ENCSR445ACU/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2-human
experiment encode accession: ENCSR445ACU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR855LCA, ENCSR240FKS
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB977SCN

value: HepG2, hepatocellular carcinoma

value: child

value: male

value: ENCBS250DDC at ENCODE; https://www.encodeproject.org/ENCBS250DDC/


title: ChIP-seq from MM.1S (ENCLB427HVW)

description:
https://www.encodeproject.org/experiments/ENCSR404LJZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR404LJZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB427HVW
size range: 300-600

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from HepG2 (ENCLB554ODG)

description:
https://www.encodeproject.org/experiments/ENCSR444LIN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on HepG2-human
experiment encode accession: ENCSR444LIN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR855LCA, ENCSR240FKS
encode release date: 2016-08-10
lab: Richard Myers, HAIB
library encode accession: ENCLB554ODG

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB358YIP)

description:
https://www.encodeproject.org/experiments/ENCSR444LIN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2-human
experiment encode accession: ENCSR444LIN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR855LCA, ENCSR240FKS
encode release date: 2016-08-10
lab: Richard Myers, HAIB
library encode accession: ENCLB358YIP

value: immortalized cell line

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB828EVG)

description:
https://www.encodeproject.org/experiments/ENCSR455DOO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR455DOO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB828EVG

value: ENCBS543FMH at ENCODE; https://www.encodeproject.org/ENCBS543FMH/


title: ChIP-seq from PC-9 (ENCLB830JFM)

description:
https://www.encodeproject.org/experiments/ENCSR402SJV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR402SJV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB830JFM
size range: 200-600

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS987JQH at ENCODE; https://www.encodeproject.org/ENCBS987JQH/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from HepG2 (ENCLB730TQT)

description:
https://www.encodeproject.org/experiments/ENCSR441KFW/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR441KFW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB730TQT

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-MXD4 fusion protein, N-terminal FLAG-MXD4 fusion protein

value: child

value: male

value: ENCBS832JHL at ENCODE; https://www.encodeproject.org/ENCBS832JHL/


title: ChIP-seq from fibroblast of arm (ENCLB375RAS)

description:
https://www.encodeproject.org/experiments/ENCSR397TUH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR397TUH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB375RAS
size range: 200-600
nucleic acid starting quantity: 24.75
nucleic acid starting quantity units: ng

source_name: Homo sapiens fibroblast of arm primary cell male adult (53 years)

value: fibroblast of arm

value: primary cell

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS367AAA at ENCODE; https://www.encodeproject.org/ENCBS367AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from HepG2 (ENCLB368KIR)

description:
https://www.encodeproject.org/experiments/ENCSR441KFW/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR441KFW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB368KIR

value: immortalized cell line

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS423ZFU at ENCODE; https://www.encodeproject.org/ENCBS423ZFU/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from liver (ENCLB370XFY)

description:
https://www.encodeproject.org/experiments/ENCSR443AIH/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on STL010-human (fragmentation date: 2015-01-29)
experiment encode accession: ENCSR443AIH
assay title: ChIP-seq
encode release date: 2016-01-29
lab: Richard Myers, HAIB
library encode accession: ENCLB370XFY

value: Control

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: female

value: healthy

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from Loucy (ENCLB388NCE)

description:
https://www.encodeproject.org/experiments/ENCSR429QYS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR429QYS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB388NCE
size range: 200-600

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

value: Loucy

value: immortalized cell line

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: Bradley Bernstein, Broad

value: ENCBS170DPY at ENCODE; https://www.encodeproject.org/ENCBS170DPY/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from neural cell (ENCLB328CMO)

description:
https://www.encodeproject.org/experiments/ENCSR397HSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR397HSO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB328CMO
size range: 200-600
nucleic acid starting quantity: 26.4
nucleic acid starting quantity units: ng

source_name: Homo sapiens neural in vitro differentiated cells male embryo

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: male

value: unknown

value: ENCBS737HIZ at ENCODE; https://www.encodeproject.org/ENCBS737HIZ/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from MM.1S (ENCLB534PGT)

description:
https://www.encodeproject.org/experiments/ENCSR399VPY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR399VPY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB534PGT
size range: 300-600
nucleic acid starting quantity: 20.434
nucleic acid starting quantity units: ng

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS981ZAE at ENCODE; https://www.encodeproject.org/ENCBS981ZAE/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from PC-9 (ENCLB841PMI)

description:
https://www.encodeproject.org/experiments/ENCSR441JWF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR441JWF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB841PMI
size range: 200-600

source_name: Homo sapiens PC-9 immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from KOPT-K1 (ENCLB562PRF)

description:
https://www.encodeproject.org/experiments/ENCSR438PYA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR438PYA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255BOF
encode release date: 2017-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB562PRF
size range: 200-600

source_name: Homo sapiens KOPT-K1 immortalized cell line

value: cells from Birgit; a human T-ALL cell line with a chromosome translocation breakpoint at t(11;14)(p13;q11) affecting the putative oncoprotein

value: unknown

value: ENCBS869LIS at ENCODE; https://www.encodeproject.org/ENCBS869LIS/

value: Derived from ENCODE donor ENCDO568LPD; https://www.encodeproject.org/ENCDO568LPD/

value: ENCODE dbxrefs Cellosaurus CVCL_4965; http://web.expasy.org/cellosaurus/CVCL_4965


title: ChIP-seq from liver (ENCLB074WPQ)

description:
https://www.encodeproject.org/experiments/ENCSR445QRF/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HNF4A-human
experiment encode accession: ENCSR445QRF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR443AIH
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB074WPQ

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: female

value: healthy

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from neural cell (ENCLB360ROS)

description:
https://www.encodeproject.org/experiments/ENCSR405NQJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR405NQJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB360ROS
size range: 200-600

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: male

value: Bradley Bernstein, Broad

value: ENCBS737HIZ at ENCODE; https://www.encodeproject.org/ENCBS737HIZ/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from radial glial cell (ENCLB425AMB)

description:
https://www.encodeproject.org/experiments/ENCSR433PUR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR433PUR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR689ICI
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB425AMB
size range: 300-1000

source_name: Homo sapiens radial glial in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein

value: radial glial cell

value: Early Radial Glia were collected at day 14 of differentiation (see protocol)

value: 5 day

value: ENCBS772AEX at ENCODE; https://www.encodeproject.org/ENCBS772AEX/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from neutrophil (ENCLB980MAQ)

description:
https://www.encodeproject.org/experiments/ENCSR393SYU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR393SYU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR557RDB
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB980MAQ
size range: 200-600

source_name: Homo sapiens neutrophil primary cell

value: neutrophil

value: primary cell

value: Neutrophils were isolated by centrifuging heparinized venous blood over Histopaque 1119 (Sigma-Aldrich) and subsequently over a discontinuous Percoll (Amersham Biosciences) gradient.  Cells provided by Max Planck Institute for Infection Biology, Berlin

value: unknown

value: not collected

value: ENCBS462VZJ at ENCODE; https://www.encodeproject.org/ENCBS462VZJ/

value: Derived from ENCODE donor ENCDO055UKA; https://www.encodeproject.org/ENCDO055UKA/


title: ChIP-seq from neural cell (ENCLB864VND)

description:
https://www.encodeproject.org/experiments/ENCSR397HSO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR397HSO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB864VND
size range: 200-600

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: healthy

value: ENCBS504GFW at ENCODE; https://www.encodeproject.org/ENCBS504GFW/


title: ChIP-seq from neutrophil (ENCLB474EBV)

description:
https://www.encodeproject.org/experiments/ENCSR393SYU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR393SYU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR557RDB
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB474EBV
size range: 200-600

value: Bradley Bernstein, Broad

value: ENCBS360EQL at ENCODE; https://www.encodeproject.org/ENCBS360EQL/


title: ChIP-seq from HepG2 (ENCLB052RBU)

description:
https://www.encodeproject.org/experiments/ENCSR430JGJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR430JGJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB052RBU

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-THRB fusion protein, N-terminal FLAG-THRB fusion protein

value: FLAG-THRB

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS758SOE at ENCODE; https://www.encodeproject.org/ENCBS758SOE/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from Loucy (ENCLB327RRB)

description:
https://www.encodeproject.org/experiments/ENCSR429QYS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR429QYS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB327RRB
size range: 200-600

source_name: Homo sapiens Loucy immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/eaafee87-23f3-4bb4-adb1-585af01db120/@@download/attachment/ChIP%20New%20General%20ChIP%20Protocol%20041510%20v05.pdf

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: female

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from gastrocnemius medialis (ENCLB177HSL)

description:
https://www.encodeproject.org/experiments/ENCSR380KNE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR380KNE
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB177HSL
size range: 200-600
nucleic acid starting quantity: 86.46
nucleic acid starting quantity units: ng

source_name: Homo sapiens gastrocnemius medialis tissue male adult (37 years)

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: 37 year

value: Bradley Bernstein, Broad

value: ENCBS263ACC at ENCODE; https://www.encodeproject.org/ENCBS263ACC/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from gastrocnemius medialis (ENCLB949DXQ)

description:
https://www.encodeproject.org/experiments/ENCSR380KNE/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR380KNE
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB949DXQ
size range: 200-600
nucleic acid starting quantity: 602.8
nucleic acid starting quantity units: ng

value: male

value: ENCBS861DVK at ENCODE; https://www.encodeproject.org/ENCBS861DVK/


title: ChIP-seq from gastrocnemius medialis (ENCLB523JHM)

description:
https://www.encodeproject.org/experiments/ENCSR380KNE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR380KNE
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB523JHM
size range: 200-600
nucleic acid starting quantity: 86.46
nucleic acid starting quantity units: ng

value: adult


title: ChIP-seq from gastrocnemius medialis (ENCLB769OFX)

description:
https://www.encodeproject.org/experiments/ENCSR380KNE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR380KNE
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB769OFX
size range: 200-600
nucleic acid starting quantity: 602.8
nucleic acid starting quantity units: ng


title: ChIP-seq from induced pluripotent stem cell (ENCLB343CID)

description:
https://www.encodeproject.org/experiments/ENCSR386RIJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR386RIJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB343CID
size range: 200-600

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: Thomas Gingeras, CSHL

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from fibroblast of arm (ENCLB880YIQ)

description:
https://www.encodeproject.org/experiments/ENCSR377QMP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR377QMP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-11-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB880YIQ
size range: 200-600
nucleic acid starting quantity: 15.71
nucleic acid starting quantity units: ng

value: fibroblast of arm

value: primary cell

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

value: ENCBS372AAA at ENCODE; https://www.encodeproject.org/ENCBS372AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from SK-N-SH (ENCLB658VCI)

description:
https://www.encodeproject.org/experiments/ENCSR423UOT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR423UOT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB658VCI
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: immortalized cell line

value: 4 year

value: child

value: female

value: Bradley Bernstein, Broad

value: ENCBS324TZB at ENCODE; https://www.encodeproject.org/ENCBS324TZB/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from bipolar spindle neuron (ENCLB393LQH)

description:
https://www.encodeproject.org/experiments/ENCSR375IXS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR375IXS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-05-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB393LQH
size range: 200-600

source_name: Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS374AAA at ENCODE; https://www.encodeproject.org/ENCBS374AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from fibroblast of arm (ENCLB652ZOL)

description:
https://www.encodeproject.org/experiments/ENCSR377QMP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR377QMP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-11-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB652ZOL
size range: 200-600
nucleic acid starting quantity: 20.28
nucleic acid starting quantity units: ng

value: fibroblast of arm

value: primary cell

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

value: ENCBS367AAA at ENCODE; https://www.encodeproject.org/ENCBS367AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from bipolar spindle neuron (ENCLB784BNS)

description:
https://www.encodeproject.org/experiments/ENCSR375IXS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR375IXS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-05-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB784BNS
size range: 200-600

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/


title: ChIP-seq from HepG2 (ENCLB071OSF)

description:
https://www.encodeproject.org/experiments/ENCSR415AEB/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR415AEB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB071OSF

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS770NBJ at ENCODE; https://www.encodeproject.org/ENCBS770NBJ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB262RNH)

description:
https://www.encodeproject.org/experiments/ENCSR407BEZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ZHX2 ChIP-seq on human HepG2
experiment encode accession: ENCSR407BEZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR855LCA, ENCSR711HPO
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB262RNH

extract_protocol:
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

value: HepG2, hepatocellular carcinoma

value: male

value: ENCBS250DDC at ENCODE; https://www.encodeproject.org/ENCBS250DDC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB496HSC)

description:
https://www.encodeproject.org/experiments/ENCSR407BEZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ZHX2 ChIP-seq on human HepG2
experiment encode accession: ENCSR407BEZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR855LCA, ENCSR711HPO
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB496HSC

value: ENCBS399FDJ at ENCODE; https://www.encodeproject.org/ENCBS399FDJ/


title: ChIP-seq from neural cell (ENCLB876SYZ)

description:
https://www.encodeproject.org/experiments/ENCSR405NQJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR405NQJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB876SYZ
size range: 300-800

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: unknown

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS504GFW at ENCODE; https://www.encodeproject.org/ENCBS504GFW/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from MM.1S (ENCLB627GMD)

description:
https://www.encodeproject.org/experiments/ENCSR361FWQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR361FWQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB627GMD
size range: 300-600
nucleic acid starting quantity: 370.6
nucleic acid starting quantity units: ng

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS981ZAE at ENCODE; https://www.encodeproject.org/ENCBS981ZAE/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from SK-N-SH (ENCLB883UOQ)

description:
https://www.encodeproject.org/experiments/ENCSR366QMB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR366QMB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB883UOQ
size range: 200-600

value: SK-N-SH

value: 4 year

value: child

value: ENCBS324TZB at ENCODE; https://www.encodeproject.org/ENCBS324TZB/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from KOPT-K1 (ENCLB742DAE)

description:
https://www.encodeproject.org/experiments/ENCSR438PYA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR438PYA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR255BOF
encode release date: 2017-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB742DAE
size range: 200-600

value: cells from Birgit; a human T-ALL cell line with a chromosome translocation breakpoint at t(11;14)(p13;q11) affecting the putative oncoprotein

value: unknown

value: not collected

value: Bradley Bernstein, Broad

value: ENCBS345YKN at ENCODE; https://www.encodeproject.org/ENCBS345YKN/

value: Derived from ENCODE donor ENCDO568LPD; https://www.encodeproject.org/ENCDO568LPD/

value: ENCODE dbxrefs Cellosaurus CVCL_4965; http://web.expasy.org/cellosaurus/CVCL_4965


title: ChIP-seq from PC-9 (ENCLB666EWZ)

description:
https://www.encodeproject.org/experiments/ENCSR402SJV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR402SJV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB666EWZ
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from MM.1S (ENCLB172BGC)

description:
https://www.encodeproject.org/experiments/ENCSR361FWQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR361FWQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB172BGC
size range: 300-600
nucleic acid starting quantity: 83.98
nucleic acid starting quantity units: ng

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS241TLI at ENCODE; https://www.encodeproject.org/ENCBS241TLI/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from HepG2 (ENCLB775DWV)

description:
https://www.encodeproject.org/experiments/ENCSR430JGJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR430JGJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB775DWV

value: FLAG-THRB

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS179RGX at ENCODE; https://www.encodeproject.org/ENCBS179RGX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from MM.1S (ENCLB056ZCH)

description:
https://www.encodeproject.org/experiments/ENCSR399VPY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR399VPY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB056ZCH
size range: 300-600
nucleic acid starting quantity: 35.02
nucleic acid starting quantity units: ng

value: immortalized cell line

value: Bradley Bernstein, Broad

value: ENCBS205VYW at ENCODE; https://www.encodeproject.org/ENCBS205VYW/


title: ChIP-seq from B cell (ENCLB896GWS)

description:
https://www.encodeproject.org/experiments/ENCSR424XBP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR424XBP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AUW, ENCSR805DRF
encode release date: 2017-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB896GWS
size range: 200-600

source_name: Homo sapiens B primary cell female adult (27 years)

value: B cell

value: primary cell

value: adult

value: female

value: 27 year

value: normal

value: ENCBS400ARI at ENCODE; https://www.encodeproject.org/ENCBS400ARI/

value: Derived from ENCODE donor ENCDO115AAA; https://www.encodeproject.org/ENCDO115AAA/


title: ChIP-seq from HepG2 (ENCLB371QHD)

description:
https://www.encodeproject.org/experiments/ENCSR396SOH/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR396SOH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB371QHD

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ZNF792 fusion protein

value: child

value: male

value: ENCBS783OAK at ENCODE; https://www.encodeproject.org/ENCBS783OAK/


title: ChIP-seq from right lobe of liver (ENCLB333NQY)

description:
https://www.encodeproject.org/experiments/ENCSR344TLI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR344TLI
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR276SJT
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB333NQY
size range: 200-600

source_name: Homo sapiens right lobe of liver tissue female adult (53 years)

value: right lobe of liver

value: tissue

value: i.e. REMC 2,3,4,5 and 16; EnTEX:Liver

value: 53 year

value: ENCBS536THV at ENCODE; https://www.encodeproject.org/ENCBS536THV/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from SK-N-SH (ENCLB622BSD)

description:
https://www.encodeproject.org/experiments/ENCSR366QMB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR366QMB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB622BSD
size range: 200-600

value: SK-N-SH

value: immortalized cell line

value: 4 year

value: Bradley Bernstein, Broad

value: ENCBS500EWH at ENCODE; https://www.encodeproject.org/ENCBS500EWH/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from B cell (ENCLB480MDY)

description:
https://www.encodeproject.org/experiments/ENCSR424XBP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR424XBP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AUW, ENCSR805DRF
encode release date: 2017-01-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB480MDY
size range: 200-600

source_name: Homo sapiens B primary cell female adult (43 years)

value: B cell

value: primary cell

value: adult

value: female

value: 43 year

value: normal

value: ENCBS098ETX at ENCODE; https://www.encodeproject.org/ENCBS098ETX/

value: Derived from ENCODE donor ENCDO114AAA; https://www.encodeproject.org/ENCDO114AAA/


title: ChIP-seq from right lobe of liver (ENCLB263CGX)

description:
https://www.encodeproject.org/experiments/ENCSR344TLI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR344TLI
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR276SJT
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB263CGX
size range: 200-600

value: right lobe of liver

value: tissue

value: i.e. REMC 2,3,4,5 and 16; EnTEX:Liver

value: 53 year

value: ENCBS536THV at ENCODE; https://www.encodeproject.org/ENCBS536THV/


title: ChIP-seq from coronary artery (ENCLB862BKH)

description:
https://www.encodeproject.org/experiments/ENCSR343ZOV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR343ZOV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR122GIL
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB862BKH
size range: 200-600

source_name: Homo sapiens coronary artery tissue female adult (53 years)

value: coronary artery

value: EnTEX:Artery - Coronary

value: Bradley Bernstein, Broad

value: ENCBS474IPU at ENCODE; https://www.encodeproject.org/ENCBS474IPU/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from HepG2 (ENCLB774RLR)

description:
https://www.encodeproject.org/experiments/ENCSR396SOH/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR396SOH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB774RLR

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS329MVA at ENCODE; https://www.encodeproject.org/ENCBS329MVA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB622FSH)

description:
https://www.encodeproject.org/experiments/ENCSR415AEB/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR415AEB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB622FSH

source_name: Homo sapiens HepG2 immortalized cell line

value: ENCBS506HTI at ENCODE; https://www.encodeproject.org/ENCBS506HTI/


title: ChIP-seq from coronary artery (ENCLB538HVB)

description:
https://www.encodeproject.org/experiments/ENCSR343ZOV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR343ZOV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR122GIL
encode release date: 2016-11-02
lab: Bradley Bernstein, Broad
library encode accession: ENCLB538HVB
size range: 200-600

value: tissue

value: adult

value: female


title: ChIP-seq from HeLa-S3 (ENCLB239IFU)

description:
https://www.encodeproject.org/experiments/ENCSR340WQU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR340WQU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AOB
encode release date: 2016-11-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB239IFU
size range: 200-600

source_name: Homo sapiens HeLa-S3 immortalized cell line

value: 31 year

value: cervical adenocarcinoma

value: ENCBS075PNA at ENCODE; https://www.encodeproject.org/ENCBS075PNA/

value: Derived from ENCODE donor ENCDO000AAB; https://www.encodeproject.org/ENCDO000AAB/

value: ENCODE dbxrefs Cellosaurus CVCL_0058; http://web.expasy.org/cellosaurus/CVCL_0058


title: ChIP-seq from K562 (ENCLB703NTK)

description:
https://www.encodeproject.org/experiments/ENCSR387SYS/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on K562-human
experiment encode accession: ENCSR387SYS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR264VDP
encode release date: 2016-03-30
lab: Richard Myers, HAIB
library encode accession: ENCLB703NTK

source_name: Homo sapiens K562 immortalized cell line

value: immortalized cell line

value: K562, myelogenous leukemia

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS316CKF at ENCODE; https://www.encodeproject.org/ENCBS316CKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from PC-3 (ENCLB910ALN)

description:
https://www.encodeproject.org/experiments/ENCSR339ZMJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR339ZMJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB910ALN
size range: 300-600
nucleic acid starting quantity: 547.4
nucleic acid starting quantity units: ng

source_name: Homo sapiens PC-3 immortalized cell line

value: prostate cancer cell line

value: male

value: 62 year

value: grade IV, adenocarcinoma

value: Bradley Bernstein, Broad

value: ENCBS596CTT at ENCODE; https://www.encodeproject.org/ENCBS596CTT/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from induced pluripotent stem cell (ENCLB071VVN)

description:
https://www.encodeproject.org/experiments/ENCSR386RIJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR386RIJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB071VVN
size range: 200-600

source_name: Homo sapiens induced pluripotent stem cell line male adult (53 years) derived from fibroblast of arm

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS373AAA at ENCODE; https://www.encodeproject.org/ENCBS373AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from K562 (ENCLB843UCX)

description:
https://www.encodeproject.org/experiments/ENCSR387SYS/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on K562-human
experiment encode accession: ENCSR387SYS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR264VDP
encode release date: 2016-03-30
lab: Richard Myers, HAIB
library encode accession: ENCLB843UCX

value: immortalized cell line

value: K562, myelogenous leukemia

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS577JGM at ENCODE; https://www.encodeproject.org/ENCBS577JGM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from liver (ENCLB273ORN)

description:
https://www.encodeproject.org/experiments/ENCSR382MOM/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on YY1-human
experiment encode accession: ENCSR382MOM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2016-03-31
lab: Richard Myers, HAIB
library encode accession: ENCLB273ORN

source_name: Homo sapiens liver tissue male adult (32 years)

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from HepG2 (ENCLB756MDK)

description:
https://www.encodeproject.org/experiments/ENCSR381PHD/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2-human (fragmentation date:2014-10-14
experiment encode accession: ENCSR381PHD
assay title: ChIP-seq
encode release date: 2016-01-14
lab: Richard Myers, HAIB
library encode accession: ENCLB756MDK

value: Control

value: immortalized cell line

value: HepG2, hepatocellular carcinoma

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from liver (ENCLB191LVF)

description:
https://www.encodeproject.org/experiments/ENCSR382MOM/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on YY1-human
experiment encode accession: ENCSR382MOM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR019XRC, ENCSR628ONI
encode release date: 2016-03-31
lab: Richard Myers, HAIB
library encode accession: ENCLB191LVF

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: adult

value: Thomas Gingeras, CSHL


title: ChIP-seq from NCI-H929 (ENCLB393FKH)

description:
https://www.encodeproject.org/experiments/ENCSR339FOO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR339FOO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB393FKH
size range: 200-600

source_name: Homo sapiens NCI-H929 immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: female

value: 62 year

value: multiple myeloma

value: Bradley Bernstein, Broad

value: ENCBS571AQH at ENCODE; https://www.encodeproject.org/ENCBS571AQH/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from HCT116 (ENCLB194NKG)

description:
https://www.encodeproject.org/experiments/ENCSR333OPW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR333OPW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198WIH
encode release date: 2016-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB194NKG
size range: 200-600

source_name: Homo sapiens HCT116 immortalized cell line

value: immortalized cell line

value: cells obtained from ATCC

value: unknown

value: male

value: colorectal carcinoma

value: ENCBS847SOB at ENCODE; https://www.encodeproject.org/ENCBS847SOB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/

value: ENCODE dbxrefs Cellosaurus CVCL_0291; http://web.expasy.org/cellosaurus/CVCL_0291

value: ATCC sample source; http://www.atcc.org/products/all/CCL-247.aspx#357C3571006A4259B64650D34DF19048


title: ChIP-seq from fibroblast of arm (ENCLB400GLL)

description:
https://www.encodeproject.org/experiments/ENCSR397TUH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR397TUH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB400GLL
size range: 200-600
nucleic acid starting quantity: 34.25
nucleic acid starting quantity units: ng

source_name: Homo sapiens fibroblast of arm primary cell male adult (53 years)

value: fibroblast of arm

value: primary cell

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS372AAA at ENCODE; https://www.encodeproject.org/ENCBS372AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from NCI-H929 (ENCLB676ONV)

description:
https://www.encodeproject.org/experiments/ENCSR339FOO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR339FOO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB676ONV
size range: 200-600

value: immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: female

value: 62 year

value: multiple myeloma

value: Bradley Bernstein, Broad

value: ENCBS197CBA at ENCODE; https://www.encodeproject.org/ENCBS197CBA/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from OCI-LY7 (ENCLB072LQM)

description:
https://www.encodeproject.org/experiments/ENCSR331RGM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR331RGM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR063AUO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB072LQM
size range: 200-600

source_name: Homo sapiens OCI-LY7 immortalized cell line

value: established from the peripheral blood sample of a 48-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL, diffuse large cell lymphoma, DLCL, stage 2A, at relapse) in 1984

value: 48 year

value: male

value: B cell lymphoma

value: ENCBS304FAI at ENCODE; https://www.encodeproject.org/ENCBS304FAI/

value: Derived from ENCODE donor ENCDO351AAA; https://www.encodeproject.org/ENCDO351AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1881; http://web.expasy.org/cellosaurus/CVCL_1881


title: ChIP-seq from OCI-LY7 (ENCLB010YQG)

description:
https://www.encodeproject.org/experiments/ENCSR331RGM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR331RGM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR063AUO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB010YQG
size range: 200-600

value: adult

value: ENCBS699NWP at ENCODE; https://www.encodeproject.org/ENCBS699NWP/


title: ChIP-seq from HeLa-S3 (ENCLB729HUC)

description:
https://www.encodeproject.org/experiments/ENCSR340WQU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR340WQU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AOB
encode release date: 2016-11-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB729HUC
size range: 200-600

value: immortalized cell line

value: 31 year

value: cervical adenocarcinoma

value: ENCBS655ARO at ENCODE; https://www.encodeproject.org/ENCBS655ARO/

value: Derived from ENCODE donor ENCDO000AAB; https://www.encodeproject.org/ENCDO000AAB/

value: ENCODE dbxrefs Cellosaurus CVCL_0058; http://web.expasy.org/cellosaurus/CVCL_0058


title: ChIP-seq from MCF-7 (ENCLB271CJM)

description:
https://www.encodeproject.org/experiments/ENCSR374RZR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR374RZR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB271CJM
size range: 200-600

source_name: Homo sapiens MCF-7 immortalized cell line

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: female

value: breast cancer (adenocarcinoma)

value: Bradley Bernstein, Broad

value: ENCBS967MVZ at ENCODE; https://www.encodeproject.org/ENCBS967MVZ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from PC-3 (ENCLB486IOQ)

description:
https://www.encodeproject.org/experiments/ENCSR328AHC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR328AHC
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB486IOQ
size range: 300-600

value: Control

value: prostate cancer cell line

value: adult

value: male

value: 62 year

value: grade IV, adenocarcinoma

value: ENCBS596CTT at ENCODE; https://www.encodeproject.org/ENCBS596CTT/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from HepG2 (ENCLB159SHW)

description:
https://www.encodeproject.org/experiments/ENCSR372JXR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR372JXR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB159SHW

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-ZNF511 fusion protein, C-terminal FLAG-ZNF511 fusion protein

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS461NPS at ENCODE; https://www.encodeproject.org/ENCBS461NPS/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from fibroblast of arm (ENCLB240RDY)

description:
https://www.encodeproject.org/experiments/ENCSR328AVV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR328AVV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB240RDY
size range: 200-600
nucleic acid starting quantity: 25.3
nucleic acid starting quantity units: ng

value: fibroblast of arm

value: primary cell

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: Thomas Gingeras, CSHL

value: ENCBS367AAA at ENCODE; https://www.encodeproject.org/ENCBS367AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from fibroblast of arm (ENCLB580GXU)

description:
https://www.encodeproject.org/experiments/ENCSR328AVV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR328AVV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB580GXU
size range: 200-600
nucleic acid starting quantity: 347.6
nucleic acid starting quantity units: ng

value: adult

value: male

value: ENCBS372AAA at ENCODE; https://www.encodeproject.org/ENCBS372AAA/


title: ChIP-seq from MCF-7 (ENCLB872LQI)

description:
https://www.encodeproject.org/experiments/ENCSR374RZR/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR374RZR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB872LQI
size range: 200-600
nucleic acid starting quantity: 295
nucleic acid starting quantity units: ng

value: immortalized cell line

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: female

value: breast cancer (adenocarcinoma)

value: Bradley Bernstein, Broad

value: ENCBS789UPK at ENCODE; https://www.encodeproject.org/ENCBS789UPK/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from HepG2 (ENCLB553PMF)

description:
https://www.encodeproject.org/experiments/ENCSR372JXR/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR372JXR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB553PMF

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS787OIC at ENCODE; https://www.encodeproject.org/ENCBS787OIC/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from NCI-H929 (ENCLB786JDG)

description:
https://www.encodeproject.org/experiments/ENCSR327OGS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR327OGS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB786JDG
size range: 200-600
nucleic acid starting quantity: 23.025
nucleic acid starting quantity units: ng

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: adult

value: 62 year

value: multiple myeloma

value: ENCBS197CBA at ENCODE; https://www.encodeproject.org/ENCBS197CBA/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from HepG2 (ENCLB679JUZ)

description:
https://www.encodeproject.org/experiments/ENCSR396QWK/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR396QWK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB679JUZ

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-MBD1_isoform1 fusion protein

value: immortalized cell line

value: male

value: ENCBS405JBR at ENCODE; https://www.encodeproject.org/ENCBS405JBR/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from GM12878 (ENCLB821YAA)

description:
https://www.encodeproject.org/experiments/ENCSR372GIN/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on GM12878-human
experiment encode accession: ENCSR372GIN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000BVP
encode release date: 2016-10-27
lab: Richard Myers, HAIB
library encode accession: ENCLB821YAA

source_name: Homo sapiens GM12878 immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: female

value: unknown

value: ENCBS110ENC at ENCODE; https://www.encodeproject.org/ENCBS110ENC/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: ENCODE dbxrefs GM12878; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=GM12878

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: ChIP-seq from GM12878 (ENCLB652VDL)

description:
https://www.encodeproject.org/experiments/ENCSR372GIN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on GM12878-human
experiment encode accession: ENCSR372GIN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000BVP
encode release date: 2016-10-27
lab: Richard Myers, HAIB
library encode accession: ENCLB652VDL

value: GM12878, B-lymphocyte, lymphoblastoid

value: adult

value: Richard Myers, HAIB

value: ENCBS845TXY at ENCODE; https://www.encodeproject.org/ENCBS845TXY/

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878


title: ChIP-seq from NCI-H929 (ENCLB747QLN)

description:
https://www.encodeproject.org/experiments/ENCSR327OGS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR327OGS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB747QLN
size range: 200-600

value: immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: 62 year

value: multiple myeloma

value: Bradley Bernstein, Broad

value: ENCBS571AQH at ENCODE; https://www.encodeproject.org/ENCBS571AQH/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from Karpas-422 (ENCLB264SHS)

description:
https://www.encodeproject.org/experiments/ENCSR317NQG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR317NQG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR367UDO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB264SHS
size range: 200-600

source_name: Homo sapiens Karpas-422 immortalized cell line

value: Karpas422- Human B cell non-Hodgkin lymphoma

value: 73 year

value: female

value: human B cell non-Hodgkin's lymphoma

value: ENCBS301UOD at ENCODE; https://www.encodeproject.org/ENCBS301UOD/

value: Derived from ENCODE donor ENCDO354AAA; https://www.encodeproject.org/ENCDO354AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1325; http://web.expasy.org/cellosaurus/CVCL_1325