title: ChIP-seq from K562 (ENCLB303FFT)

description:
https://www.encodeproject.org/experiments/ENCSR429XTR/
***************
biological replicate number: 2
technical replicate number: 1
description: TARDBP ChIP-seq in K562
experiment encode accession: ENCSR429XTR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR932KYH
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB303FFT
size range: 200-400

value: TARDBP

value: immortalized cell line

value: TDP43 ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS370BJT at ENCODE; https://www.encodeproject.org/ENCBS370BJT/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB295MWI)

status: Public on Oct 23 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR620VIC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-CEBPG ChIP-seq on human K562
experiment encode accession: ENCSR620VIC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR825KUF
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB295MWI
size range: 200-800
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-CEBPG fusion protein

extract_protocol: not provided

tag: antibody

value: eGFP-CEBPG

tag: line

tag: description

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to CEBPG

tag: biosample encode accession

tag: Sex

value: female

tag: lab

value: Kevin White, UChicago

tag: passage number

tag: health state

tag: age

tag: dev stage

value: adult

tag: link

value: ENCBS760ONP at ENCODE; https://www.encodeproject.org/ENCBS760ONP/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ77; http://web.expasy.org/cellosaurus/CVCL_GZ77


title: ChIP-seq from gastroesophageal sphincter (ENCLB585QPB)

description:
https://www.encodeproject.org/experiments/ENCSR336ZYT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Tue Sep 20 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR336ZYT
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB585QPB

source_name: Homo sapiens gastroesophageal sphincter tissue male adult (54 years)

extract_protocol: extraction method: see document

value: Control

value: gastroesophageal sphincter

value: tissue

value: male

value: Richard Myers, HAIB

value: 54 year

value: ENCBS046QDK at ENCODE; https://www.encodeproject.org/ENCBS046QDK/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/aefef6c9-f63e-4eb1-91a6-8a2383250cec/@@download/attachment/82359.svs


title: ChIP-seq from MCF-7 (ENCLB575SOG)

description:
https://www.encodeproject.org/experiments/ENCSR417DKD/
***************
biological replicate number: 2
technical replicate number: 1
description: NFXL1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR417DKD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB575SOG
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: immortalized cell line

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS758TZQ at ENCODE; https://www.encodeproject.org/ENCBS758TZQ/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from K562 (ENCLB401FBV)

description:
https://www.encodeproject.org/experiments/ENCSR608XTF/
***************
biological replicate number: 2
technical replicate number: 1
description: RNF2 ChIP-seq on human K562
experiment encode accession: ENCSR608XTF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR632PAG
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB401FBV
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: adult

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS719UQU at ENCODE; https://www.encodeproject.org/ENCBS719UQU/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from body of pancreas (ENCLB573AJZ)

description:
https://www.encodeproject.org/experiments/ENCSR610EFT/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human body of pancreas
experiment encode accession: ENCSR610EFT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR853XCA
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB573AJZ
size range: 450-650

source_name: Homo sapiens body of pancreas tissue female adult (51 year)

value: body of pancreas

value: tissue

value: 51 year

value: ENCBS425WFZ at ENCODE; https://www.encodeproject.org/ENCBS425WFZ/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from K562 (ENCLB741MQA)

description:
https://www.encodeproject.org/experiments/ENCSR608XTF/
***************
biological replicate number: 1
technical replicate number: 1
description: RNF2 ChIP-seq on human K562
experiment encode accession: ENCSR608XTF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR632PAG
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB741MQA
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: ENCBS125ACM at ENCODE; https://www.encodeproject.org/ENCBS125ACM/


title: ChIP-seq from K562 (ENCLB295RTL)

description:
https://www.encodeproject.org/experiments/ENCSR336DXE/
***************
biological replicate number: 3
technical replicate number: 1
description: SKIL ChIP-seq on human K562
experiment encode accession: ENCSR336DXE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2017-06-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB295RTL
size range: 450-650

value: SKIL

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: ENCBS994WPS at ENCODE; https://www.encodeproject.org/ENCBS994WPS/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from MCF-7 (ENCLB084HOP)

description:
https://www.encodeproject.org/experiments/ENCSR620DUQ/
***************
biological replicate number: 1
technical replicate number: 1
description: CREB1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR620DUQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB084HOP
size range: 450-650

value: adult

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS050QMU at ENCODE; https://www.encodeproject.org/ENCBS050QMU/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from MCF-7 (ENCLB178SSI)

description:
https://www.encodeproject.org/experiments/ENCSR620DUQ/
***************
biological replicate number: 2
technical replicate number: 1
description: CREB1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR620DUQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB178SSI
size range: 450-650

value: ENCBS523HSQ at ENCODE; https://www.encodeproject.org/ENCBS523HSQ/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from K562 (ENCLB491EZI)

description:
https://www.encodeproject.org/experiments/ENCSR336DXE/
***************
biological replicate number: 2
technical replicate number: 1
description: SKIL ChIP-seq on human K562
experiment encode accession: ENCSR336DXE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2017-06-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB491EZI
size range: 450-650

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS543YEP at ENCODE; https://www.encodeproject.org/ENCBS543YEP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from gastroesophageal sphincter (ENCLB764FZA)

description:
https://www.encodeproject.org/experiments/ENCSR414TPL/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human gastroesophageal sphincter
experiment encode accession: ENCSR414TPL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR483GTS
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB764FZA
size range: 450-650

source_name: Homo sapiens gastroesophageal sphincter tissue male adult (37 years)

value: gastroesophageal sphincter

value: tissue

value: male

value: Michael Snyder, Stanford

value: 37 year

value: ENCBS543LVV at ENCODE; https://www.encodeproject.org/ENCBS543LVV/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from K562 (ENCLB351DCF)

description:
https://www.encodeproject.org/experiments/ENCSR429QPP/
***************
biological replicate number: 2
technical replicate number: 1
description: FOXM1 ChIP-seq on human K562
experiment encode accession: ENCSR429QPP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2017-01-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB351DCF
size range: 450-650

value: immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: female

value: ENCBS048GNZ at ENCODE; https://www.encodeproject.org/ENCBS048GNZ/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from MCF-7 (ENCLB938INZ)

description:
https://www.encodeproject.org/experiments/ENCSR417DKD/
***************
biological replicate number: 1
technical replicate number: 1
description: NFXL1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR417DKD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB938INZ
size range: 450-650

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS242FXL at ENCODE; https://www.encodeproject.org/ENCBS242FXL/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from GM12878 (ENCLB847QUV)

description:
https://www.encodeproject.org/experiments/ENCSR412YGM/
***************
biological replicate number: 1
technical replicate number: 1
description: ZSCAN29 ChIP-seq on human GM12878
experiment encode accession: ENCSR412YGM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB847QUV
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: unknown

value: ENCBS607NAA at ENCODE; https://www.encodeproject.org/ENCBS607NAA/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: ChIP-seq from gastrocnemius medialis (ENCLB157LAI)

description:
https://www.encodeproject.org/experiments/ENCSR414SWG/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human gastrocnemius medialis
experiment encode accession: ENCSR414SWG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR139VAY
encode release date: 2017-03-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB157LAI
size range: 450-650

source_name: Homo sapiens gastrocnemius medialis tissue female adult (51 year)

value: gastrocnemius medialis

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS668EWD at ENCODE; https://www.encodeproject.org/ENCBS668EWD/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from K562 (ENCLB583IXZ)

description:
https://www.encodeproject.org/experiments/ENCSR429XTR/
***************
biological replicate number: 1
technical replicate number: 1
description: TARDBP ChIP-seq in K562
experiment encode accession: ENCSR429XTR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR932KYH
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB583IXZ
size range: 200-400

value: TARDBP

value: immortalized cell line

value: TDP43 ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS267LNH at ENCODE; https://www.encodeproject.org/ENCBS267LNH/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB006HES)

description:
https://www.encodeproject.org/experiments/ENCSR429QPP/
***************
biological replicate number: 1
technical replicate number: 1
description: FOXM1 ChIP-seq on human K562
experiment encode accession: ENCSR429QPP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2017-01-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB006HES
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: female

value: ENCBS118YJZ at ENCODE; https://www.encodeproject.org/ENCBS118YJZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from GM12878 (ENCLB132WIX)

description:
https://www.encodeproject.org/experiments/ENCSR412YGM/
***************
biological replicate number: 2
technical replicate number: 1
description: ZSCAN29 ChIP-seq on human GM12878
experiment encode accession: ENCSR412YGM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB132WIX
size range: 450-650

value: unknown

value: Michael Snyder, Stanford

value: ENCBS436SAI at ENCODE; https://www.encodeproject.org/ENCBS436SAI/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: ChIP-seq from HCT116 (ENCLB295GUJ)

description:
https://www.encodeproject.org/experiments/ENCSR503GVO/
***************
biological replicate number: 1
technical replicate number: 1
description: ZFX ChIP-seq on human HCT116
experiment encode accession: ENCSR503GVO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR305PNK
encode release date: 2017-09-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB295GUJ
size range: 450-650

source_name: Homo sapiens HCT116 immortalized cell line

value: ZFX

value: immortalized cell line

value: male

value: colorectal carcinoma

value: ENCBS626JHZ at ENCODE; https://www.encodeproject.org/ENCBS626JHZ/

value: derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: ChIP-seq from HCT116 (ENCLB670GFF)

description:
https://www.encodeproject.org/experiments/ENCSR503GVO/
***************
biological replicate number: 2
technical replicate number: 1
description: ZFX ChIP-seq on human HCT116
experiment encode accession: ENCSR503GVO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR305PNK
encode release date: 2017-09-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB670GFF
size range: 450-650

value: adult

value: ENCBS615KTO at ENCODE; https://www.encodeproject.org/ENCBS615KTO/


title: ChIP-seq from K562 (ENCLB794RWU)

description:
https://www.encodeproject.org/experiments/ENCSR331OJY/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq in K562
experiment encode accession: ENCSR331OJY
assay title: ChIP-seq
encode release date: 2017-02-15
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB794RWU
size range: 200-400

value: Control

value: Control ChIP-seq in K562

value: female

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS819AUE at ENCODE; https://www.encodeproject.org/ENCBS819AUE/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from vagina (ENCLB373LND)

description:
https://www.encodeproject.org/experiments/ENCSR606TNN/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human vagina
experiment encode accession: ENCSR606TNN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR558QYH
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB373LND
size range: 450-650

source_name: Homo sapiens vagina tissue female adult (53 years)

value: CTCF

value: vagina

value: tissue

value: Michael Snyder, Stanford

value: ENCBS762FDB at ENCODE; https://www.encodeproject.org/ENCBS762FDB/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from HEK293 (ENCLB467KZO)

description:
https://www.encodeproject.org/experiments/ENCSR501NSC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZSCAN26 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR501NSC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB467KZO
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZSCAN26 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZSCAN26 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS510PIY at ENCODE; https://www.encodeproject.org/ENCBS510PIY/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB116NBM)

description:
https://www.encodeproject.org/experiments/ENCSR501NSC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZSCAN26 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR501NSC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB116NBM
size range: 450-650

value: female

value: ENCBS778HBG at ENCODE; https://www.encodeproject.org/ENCBS778HBG/


title: Hi-C from brain pericyte (ENCLB294VIS)

description:
https://www.encodeproject.org/experiments/ENCSR323QIP/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on brain pericyte
experiment encode accession: ENCSR323QIP
assay title: Hi-C
assembly: hg19
encode release date: 2017-10-02
lab: Job Dekker, UMass
library encode accession: ENCLB294VIS

source_name: Homo sapiens brain pericyte primary cell

value: brain pericyte

value: primary cell

value: brain vascular pericytes

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS040IID at ENCODE; https://www.encodeproject.org/ENCBS040IID/

value: derived from ENCODE donor ENCDO228AAA; https://www.encodeproject.org/ENCDO228AAA/

value: ENCODE dbxrefs HBVP; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HBVP

value: ScienCell sample source; http://www.sciencellonline.com/human-brain-vascular-pericytes.html


title: ChIP-seq from body of pancreas (ENCLB266NHN)

description:
https://www.encodeproject.org/experiments/ENCSR307PFP/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human body of pancreas
experiment encode accession: ENCSR307PFP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR462SLN
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB266NHN
size range: 450-650

source_name: Homo sapiens body of pancreas tissue male adult (37 years)

value: CTCF

value: body of pancreas

value: tissue

value: male

value: Michael Snyder, Stanford

value: 37 year

value: adult

value: ENCBS799DMW at ENCODE; https://www.encodeproject.org/ENCBS799DMW/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from right lobe of liver (ENCLB564LIA)

description:
https://www.encodeproject.org/experiments/ENCSR415MOW/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human right lobe of liver
experiment encode accession: ENCSR415MOW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR790UYC
encode release date: 2017-03-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB564LIA
size range: 450-650

source_name: Homo sapiens right lobe of liver tissue female adult (53 years)

value: right lobe of liver

value: female

value: 53 year

value: ENCBS904HZU at ENCODE; https://www.encodeproject.org/ENCBS904HZU/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: Hi-C from brain pericyte (ENCLB786JJC)

description:
https://www.encodeproject.org/experiments/ENCSR323QIP/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on brain pericyte
experiment encode accession: ENCSR323QIP
assay title: Hi-C
assembly: hg19
encode release date: 2017-10-02
lab: Job Dekker, UMass
library encode accession: ENCLB786JJC

value: brain pericyte

value: primary cell

value: brain vascular pericytes

value: not collected

value: John Stamatoyannopoulos, UW

value: unknown

value: ENCBS305AAA at ENCODE; https://www.encodeproject.org/ENCBS305AAA/

value: derived from ENCODE donor ENCDO228AAA; https://www.encodeproject.org/ENCDO228AAA/


title: ChIP-seq from adrenal gland (ENCLB227GJR)

description:
https://www.encodeproject.org/experiments/ENCSR412QGD/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human adrenal gland
experiment encode accession: ENCSR412QGD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR867NUH
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB227GJR
size range: 450-650

source_name: Homo sapiens adrenal gland tissue female adult (51 year)

value: adrenal gland

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS055JKA at ENCODE; https://www.encodeproject.org/ENCBS055JKA/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from breast epithelium (ENCLB600CNQ)

description:
https://www.encodeproject.org/experiments/ENCSR304XUZ/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human breast epithelium
experiment encode accession: ENCSR304XUZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR366VWM
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB600CNQ
size range: 450-650

source_name: Homo sapiens breast epithelium tissue female adult (53 years)

value: CTCF

value: breast epithelium

value: female

value: 53 year

value: adult

value: ENCBS114DQJ at ENCODE; https://www.encodeproject.org/ENCBS114DQJ/


title: ChIP-seq from sigmoid colon (ENCLB115OMI)

description:
https://www.encodeproject.org/experiments/ENCSR323POR/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human sigmoid colon
experiment encode accession: ENCSR323POR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR236MWZ
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB115OMI
size range: 450-650

source_name: Homo sapiens sigmoid colon tissue female adult (53 years)

value: sigmoid colon

value: ENCBS835BNK at ENCODE; https://www.encodeproject.org/ENCBS835BNK/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from transverse colon (ENCLB091DRX)

description:
https://www.encodeproject.org/experiments/ENCSR429JTR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on transverse colon
experiment encode accession: ENCSR429JTR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR293DLP
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB091DRX

source_name: Homo sapiens transverse colon tissue male adult (37 years)

value: transverse colon

value: male

value: Richard Myers, HAIB

value: 37 year

value: ENCBS272LPG at ENCODE; https://www.encodeproject.org/ENCBS272LPG/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from K562 (ENCLB352FLT)

description:
https://www.encodeproject.org/experiments/ENCSR331OJY/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq in K562
experiment encode accession: ENCSR331OJY
assay title: ChIP-seq
encode release date: 2017-02-15
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB352FLT
size range: 200-400

value: Control

value: immortalized cell line

value: Control ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: ENCBS097LJT at ENCODE; https://www.encodeproject.org/ENCBS097LJT/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB492SKV)

description:
https://www.encodeproject.org/experiments/ENCSR420JAH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ZFX tagged K562 cell line.
experiment encode accession: ENCSR420JAH
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB492SKV
size range: 200-800

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZFX fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZFX

value: female

value: Kevin White, UChicago

value: 53 year

value: adult

value: ENCBS458HHF at ENCODE; https://www.encodeproject.org/ENCBS458HHF/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ97; http://web.expasy.org/cellosaurus/CVCL_GZ97


title: ChIP-seq from vagina (ENCLB227GAT)

description:
https://www.encodeproject.org/experiments/ENCSR401ORC/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human vagina
experiment encode accession: ENCSR401ORC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR558QYH
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB227GAT
size range: 450-650

value: vagina

value: tissue

value: Michael Snyder, Stanford

value: ENCBS762FDB at ENCODE; https://www.encodeproject.org/ENCBS762FDB/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from breast epithelium (ENCLB596FXQ)

description:
https://www.encodeproject.org/experiments/ENCSR304IVU/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human breast epithelium
experiment encode accession: ENCSR304IVU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR794WXG
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB596FXQ
size range: 450-650

source_name: Homo sapiens breast epithelium tissue female adult (51 year)

value: breast epithelium

value: 51 year

value: ENCBS824TRN at ENCODE; https://www.encodeproject.org/ENCBS824TRN/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from HEK293 (ENCLB823ALQ)

description:
https://www.encodeproject.org/experiments/ENCSR321MSF/
***************
biological replicate number: 5
technical replicate number: 1
description: eGFP-ZBTB21 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR321MSF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-03-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB823ALQ
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZBTB21 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZBTB21 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS866NNL at ENCODE; https://www.encodeproject.org/ENCBS866NNL/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from stomach (ENCLB931WAR)

description:
https://www.encodeproject.org/experiments/ENCSR618QYE/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human stomach
experiment encode accession: ENCSR618QYE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR394BOP
encode release date: 2016-07-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB931WAR
size range: 450-650

source_name: Homo sapiens stomach tissue male adult (37 years)

value: CTCF

value: stomach

value: male

value: 37 year

value: adult

value: ENCBS962HLD at ENCODE; https://www.encodeproject.org/ENCBS962HLD/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HEK293 (ENCLB706FWC)

description:
https://www.encodeproject.org/experiments/ENCSR418NZA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF524 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR418NZA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB706FWC
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF524 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF524 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: ENCBS900SYX at ENCODE; https://www.encodeproject.org/ENCBS900SYX/


title: ChIP-seq from K562 (ENCLB369GSL)

description:
https://www.encodeproject.org/experiments/ENCSR613NUC/
***************
biological replicate number: 1
technical replicate number: 1
description: ARNT ChIP-seq on human K562
experiment encode accession: ENCSR613NUC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB369GSL
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: ARNT

value: immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS839CNN at ENCODE; https://www.encodeproject.org/ENCBS839CNN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HEK293 (ENCLB927FIF)

description:
https://www.encodeproject.org/experiments/ENCSR321MSF/
***************
biological replicate number: 4
technical replicate number: 1
description: eGFP-ZBTB21 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR321MSF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2017-03-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB927FIF
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZBTB21 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS722WSQ at ENCODE; https://www.encodeproject.org/ENCBS722WSQ/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB449XJZ)

description:
https://www.encodeproject.org/experiments/ENCSR500VBE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ZNF354B tagged K562 cell line.
experiment encode accession: ENCSR500VBE
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Kevin White, UChicago
library encode accession: ENCLB449XJZ

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF354B fusion protein

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF354B

value: female

value: Kevin White, UChicago

value: adult

value: ENCBS852SOK at ENCODE; https://www.encodeproject.org/ENCBS852SOK/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from body of pancreas (ENCLB405IOP)

description:
https://www.encodeproject.org/experiments/ENCSR408XTO/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human body of pancreas
experiment encode accession: ENCSR408XTO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR853XCA
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB405IOP
size range: 450-650

source_name: Homo sapiens body of pancreas tissue female adult (51 year)

value: CTCF

value: body of pancreas

value: tissue

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS425WFZ at ENCODE; https://www.encodeproject.org/ENCBS425WFZ/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from K562 (ENCLB295YUB)

description:
https://www.encodeproject.org/experiments/ENCSR613NUC/
***************
biological replicate number: 2
technical replicate number: 1
description: ARNT ChIP-seq on human K562
experiment encode accession: ENCSR613NUC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB295YUB
size range: 450-650

value: ARNT

value: immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS603CUX at ENCODE; https://www.encodeproject.org/ENCBS603CUX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ago1-27 (three replicates)

city: Tianjin

first: Xuan

last: Ma

address: Binshui West Road

department: College of Life Sciences

country: China

institute: Tianjin Normal University

library_source: transcriptomic

data_processing:
Degradome reads were first processed to remove the adapter sequence and adaptor-free reads <18-nt were discarded.Because the three replicates were highly reproducible, they were merged and subjected to subsequent analysis.
The CleaveLand4 pipeline (https://github.com/MikeAxtell/CleaveLand4) was applied to produce the degradome density files.
miRNA and siRNA target prediction was performed using psRNATarget (http://plantgrn.noble.org/psRNATarget/) with stringent criteria (expectation score <3).
An in-house Perl script was used to identify the degradome category for the predicted cleavage site. Only categories 0-3 were considered in our analysis.
Genome_build: TAIR 10
Supplementary_files_format_and_content: The tab-delimited text file include degradome reads sequence and counts for each sequence.

molecule: total RNA

organism: Arabidopsis thaliana

source_name: seedling

growth_protocol: Seeds of wild type (Col) and ago1-27 were sterilized, plated on the 1/2 Murashige and Skoog medium and grew under long-day conditions (16 h light/8 h in dark) at 22℃.

extract_protocol:
12-day-old seedlings were collected for RNA exaction. Total RNA was extracted using TRIzol reagent (Invitrogen) according to the manufacturer’s instruction.
Library construction was performed as described (Zhai et al., 2014, Methods 67, 84-90) with 75μg of total RNA.
Sequencing was performed on an Illumina HiSeq 2500 platform.

tag: genotype


title: microRNA-seq from hepatocyte (ENCLB551CDW)

description:
https://www.encodeproject.org/experiments/ENCSR616TOP/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on human hepatocyte derived from H9
experiment encode accession: ENCSR616TOP
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2017-02-01
lab: Ali Mortazavi, UCI
library encode accession: ENCLB551CDW
size range: <30

source_name: Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from LNCAP (ENCLB241MDZ)

description:
https://www.encodeproject.org/experiments/ENCSR315NAC/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human LNCAP
experiment encode accession: ENCSR315NAC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR300XAV
encode release date: 2017-06-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB241MDZ
size range: 450-650

source_name: Homo sapiens LNCAP immortalized cell line

value: CTCF

value: LNCAP

value: immortalized cell line

value: male

value: Michael Snyder, Stanford

value: prostate adenocarcinoma

value: 50 year

value: adult

value: ENCBS535BWO at ENCODE; https://www.encodeproject.org/ENCBS535BWO/

value: derived from ENCODE donor ENCDO000ACX; https://www.encodeproject.org/ENCDO000ACX/


title: microRNA-seq from hepatocyte (ENCLB659RPC)

description:
https://www.encodeproject.org/experiments/ENCSR616TOP/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on human hepatocyte derived from H9
experiment encode accession: ENCSR616TOP
assay title: microRNA-seq
assembly: GRCh38
encode release date: 2017-02-01
lab: Ali Mortazavi, UCI
library encode accession: ENCLB659RPC
size range: <30

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/


title: WT (three replicates)

value: WT


title: ChIP-seq from tibial artery (ENCLB077XHW)

description:
https://www.encodeproject.org/experiments/ENCSR405DOJ/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human tibial artery
experiment encode accession: ENCSR405DOJ
assay title: ChIP-seq
encode release date: 2017-02-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB077XHW
size range: 450-650

source_name: Homo sapiens tibial artery tissue male adult (37 years)

value: Control

value: tibial artery

value: tissue

value: 37 year

value: ENCBS825KJI at ENCODE; https://www.encodeproject.org/ENCBS825KJI/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HEK293 (ENCLB167ZKT)

description:
https://www.encodeproject.org/experiments/ENCSR418NZA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF524 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR418NZA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB167ZKT
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF524 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS483GEY at ENCODE; https://www.encodeproject.org/ENCBS483GEY/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from sigmoid colon (ENCLB293YZS)

description:
https://www.encodeproject.org/experiments/ENCSR313BMV/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on sigmoid colon
experiment encode accession: ENCSR313BMV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR393DQE
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB293YZS

value: sigmoid colon

value: Richard Myers, HAIB

value: 53 year

value: adult

value: ENCBS440VLN at ENCODE; https://www.encodeproject.org/ENCBS440VLN/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/6e608c6e-94f9-4c52-b54d-8a54a2f1adee/@@download/attachment/83394.svs


title: ChIP-seq from K562 (ENCLB034WJJ)

description:
https://www.encodeproject.org/experiments/ENCSR594BNR/
***************
biological replicate number: 2
technical replicate number: 1
description: HNRNPL ChIP-seq in K562
experiment encode accession: ENCSR594BNR
assay title: ChIP-seq
assembly: hg19
possible controls: ENCSR436OZQ
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB034WJJ
size range: 200-400

value: HNRNPL

value: HNRNPL ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: ENCBS772VHK at ENCODE; https://www.encodeproject.org/ENCBS772VHK/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB310DYL)

description:
https://www.encodeproject.org/experiments/ENCSR415TXN/
***************
biological replicate number: 1
technical replicate number: 1
description: NONO ChIP-seq in K562
experiment encode accession: ENCSR415TXN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR331OJY
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB310DYL
size range: 200-400

value: NONO

value: immortalized cell line

value: NONO ChIP-seq in K562

value: female

value: ENCBS984PPX at ENCODE; https://www.encodeproject.org/ENCBS984PPX/


title: Hi-C from SK-MEL-5 (ENCLB462TWE)

description:
https://www.encodeproject.org/experiments/ENCSR312KHQ/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on SK-MEL-5
experiment encode accession: ENCSR312KHQ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB462TWE

source_name: Homo sapiens SK-MEL-5 immortalized cell line

value: John Stamatoyannopoulos, UW

value: 24 year

value: ENCBS981ZNI at ENCODE; https://www.encodeproject.org/ENCBS981ZNI/

value: derived from ENCODE donor ENCDO338AAA; https://www.encodeproject.org/ENCDO338AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0527; http://web.expasy.org/cellosaurus/CVCL_0527


title: ChIP-seq from K562 (ENCLB368NFP)

description:
https://www.encodeproject.org/experiments/ENCSR415TXN/
***************
biological replicate number: 2
technical replicate number: 1
description: NONO ChIP-seq in K562
experiment encode accession: ENCSR415TXN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR331OJY
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB368NFP
size range: 200-400

value: 53 year

value: adult

value: ENCBS493QSQ at ENCODE; https://www.encodeproject.org/ENCBS493QSQ/


title: Hi-C from SK-MEL-5 (ENCLB296ZFT)

description:
https://www.encodeproject.org/experiments/ENCSR312KHQ/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on SK-MEL-5
experiment encode accession: ENCSR312KHQ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB296ZFT

value: ENCBS519AAA at ENCODE; https://www.encodeproject.org/ENCBS519AAA/

value: Derived from ENCODE donor ENCDO338AAA; https://www.encodeproject.org/ENCDO338AAA/


title: ChIP-seq from HepG2 (ENCLB568TWU)

description:
https://www.encodeproject.org/experiments/ENCSR590QQP/
***************
biological replicate number: 1
technical replicate number: 1
description: FUS ChIP-seq in HepG2
experiment encode accession: ENCSR590QQP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR748EXO
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB568TWU
size range: 200-400

source_name: Homo sapiens HepG2 immortalized cell line

value: FUS

value: FUS ChIP-seq in HepG2

value: male

value: Xiang-Dong Fu, UCSD

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS409PKR at ENCODE; https://www.encodeproject.org/ENCBS409PKR/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from LNCAP (ENCLB201WSI)

description:
https://www.encodeproject.org/experiments/ENCSR315NAC/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on human LNCAP
experiment encode accession: ENCSR315NAC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR300XAV
encode release date: 2017-06-29
lab: Michael Snyder, Stanford
library encode accession: ENCLB201WSI
size range: 450-650

value: CTCF

value: LNCAP

value: immortalized cell line

value: Michael Snyder, Stanford

value: prostate adenocarcinoma

value: 50 year

value: ENCBS918PKZ at ENCODE; https://www.encodeproject.org/ENCBS918PKZ/

value: derived from ENCODE donor ENCDO000ACX; https://www.encodeproject.org/ENCDO000ACX/


title: ChIP-seq from HepG2 (ENCLB784IRX)

description:
https://www.encodeproject.org/experiments/ENCSR590QQP/
***************
biological replicate number: 2
technical replicate number: 1
description: FUS ChIP-seq in HepG2
experiment encode accession: ENCSR590QQP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR748EXO
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB784IRX
size range: 200-400

value: FUS

value: ENCBS334CNK at ENCODE; https://www.encodeproject.org/ENCBS334CNK/


title: ChIP-seq from liver (ENCLB584XSP)

description:
https://www.encodeproject.org/experiments/ENCSR310NYI/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on FOXA2-human
experiment encode accession: ENCSR310NYI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR621CSR, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB584XSP

source_name: Homo sapiens liver tissue male adult (32 years)

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from K562 (ENCLB495JCV)

description:
https://www.encodeproject.org/experiments/ENCSR556FBD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-TFDP1 tagged K562 cell line.
experiment encode accession: ENCSR556FBD
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB495JCV
size range: 200-800

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-TFDP1 fusion protein

value: Control

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TFDP1

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS670LTO at ENCODE; https://www.encodeproject.org/ENCBS670LTO/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ94; http://web.expasy.org/cellosaurus/CVCL_GZ94


title: Hi-C from T47D (ENCLB758KFU)

description:
https://www.encodeproject.org/experiments/ENCSR549MGQ/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on T47D
experiment encode accession: ENCSR549MGQ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB758KFU

source_name: Homo sapiens T47D immortalized cell line

value: John Stamatoyannopoulos, UW

value: mammary ductal carcinoma

value: 54 year

value: adult

value: ENCBS323FFY at ENCODE; https://www.encodeproject.org/ENCBS323FFY/

value: derived from ENCODE donor ENCDO000ABA; https://www.encodeproject.org/ENCDO000ABA/

value: ENCODE dbxrefs Cellosaurus CVCL_0553; http://web.expasy.org/cellosaurus/CVCL_0553


title: ChIP-seq from K562 (ENCLB258FKG)

description:
https://www.encodeproject.org/experiments/ENCSR580IAO/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF197 ChIP-seq on human K562
experiment encode accession: ENCSR580IAO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR150XYW
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB258FKG
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF197 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF197

value: ENCBS437BJN at ENCODE; https://www.encodeproject.org/ENCBS437BJN/

value: ENCODE dbxrefs Cellosaurus CVCL_HA01; http://web.expasy.org/cellosaurus/CVCL_HA01


title: ChIP-seq from K562 (ENCLB363TXM)

description:
https://www.encodeproject.org/experiments/ENCSR606XES/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ZNF589 tagged K562 cell line.
experiment encode accession: ENCSR606XES
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB363TXM
size range: 200-800

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF589 fusion protein

value: Control

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF589

value: female

value: ENCBS609DLP at ENCODE; https://www.encodeproject.org/ENCBS609DLP/

value: ENCODE dbxrefs Cellosaurus CVCL_HA05; http://web.expasy.org/cellosaurus/CVCL_HA05


title: ChIP-seq from liver (ENCLB962GKZ)

description:
https://www.encodeproject.org/experiments/ENCSR310NYI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on FOXA2-human
experiment encode accession: ENCSR310NYI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR621CSR, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB962GKZ

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from K562 (ENCLB084LAN)

description:
https://www.encodeproject.org/experiments/ENCSR580IAO/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF197 ChIP-seq on human K562
experiment encode accession: ENCSR580IAO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR150XYW
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB084LAN
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF197

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS261OYC at ENCODE; https://www.encodeproject.org/ENCBS261OYC/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_HA01; http://web.expasy.org/cellosaurus/CVCL_HA01


title: ChIP-seq from MCF-7 (ENCLB205QPD)

description:
https://www.encodeproject.org/experiments/ENCSR309ELI/
***************
biological replicate number: 2
technical replicate number: 1
description: ZBTB1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR309ELI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB205QPD
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: immortalized cell line

value: 69 year

value: female

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS773JGQ at ENCODE; https://www.encodeproject.org/ENCBS773JGQ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: Hi-C from T47D (ENCLB183QHG)

description:
https://www.encodeproject.org/experiments/ENCSR549MGQ/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on T47D
experiment encode accession: ENCSR549MGQ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB183QHG

value: John Stamatoyannopoulos, UW

value: mammary ductal carcinoma

value: 54 year

value: ENCBS943ULT at ENCODE; https://www.encodeproject.org/ENCBS943ULT/

value: derived from ENCODE donor ENCDO000ABA; https://www.encodeproject.org/ENCDO000ABA/

value: ENCODE dbxrefs Cellosaurus CVCL_0553; http://web.expasy.org/cellosaurus/CVCL_0553


title: ChIP-seq from K562 (ENCLB629LEK)

description:
https://www.encodeproject.org/experiments/ENCSR479QAJ/
***************
biological replicate number: 2
technical replicate number: 1
description: U2AF2 ChIP-seq in K562
experiment encode accession: ENCSR479QAJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR966DOU
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB629LEK
size range: 200-400

value: U2AF2 ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS364BHZ at ENCODE; https://www.encodeproject.org/ENCBS364BHZ/


title: ChIP-seq from MCF-7 (ENCLB352DLM)

description:
https://www.encodeproject.org/experiments/ENCSR546KCN/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-FOSL2 ChIP-seq on human MCF-7
experiment encode accession: ENCSR546KCN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR907JTZ
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB352DLM
size range: 200-800

source_name: Homo sapiens MCF-7 immortalized cell line stably expressing C-terminal eGFP-FOSL2 fusion protein

value: immortalized cell line

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to FOSL2

value: female

value: Kevin White, UChicago

value: 69 year

value: ENCBS829WBT at ENCODE; https://www.encodeproject.org/ENCBS829WBT/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_HA15; http://web.expasy.org/cellosaurus/CVCL_HA15


title: ChIP-seq from HEK293 (ENCLB377QRR)

description:
https://www.encodeproject.org/experiments/ENCSR604CNJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF416 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR604CNJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB377QRR
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF416 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF416 under the control of a CMV promoter.

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS404HWV at ENCODE; https://www.encodeproject.org/ENCBS404HWV/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HCT116 (ENCLB987DCP)

description:
https://www.encodeproject.org/experiments/ENCSR305PNK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human HCT116
experiment encode accession: ENCSR305PNK
assay title: ChIP-seq
encode release date: 2017-02-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB987DCP
size range: 450-650

source_name: Homo sapiens HCT116 immortalized cell line

value: Control

value: male

value: colorectal carcinoma

value: ENCBS615KTO at ENCODE; https://www.encodeproject.org/ENCBS615KTO/

value: derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/


title: ChIP-seq from HCT116 (ENCLB910GFW)

description:
https://www.encodeproject.org/experiments/ENCSR305PNK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human HCT116
experiment encode accession: ENCSR305PNK
assay title: ChIP-seq
encode release date: 2017-02-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB910GFW
size range: 450-650

value: immortalized cell line

value: adult

value: ENCBS626JHZ at ENCODE; https://www.encodeproject.org/ENCBS626JHZ/


title: ChIP-seq from HepG2 (ENCLB311KGY)

description:
https://www.encodeproject.org/experiments/ENCSR545RWZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on HepG2
experiment encode accession: ENCSR545RWZ
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB311KGY
size range: 200-400

value: Control ChIP-seq on HepG2 cells

value: Xiang-Dong Fu, UCSD

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS141IFN at ENCODE; https://www.encodeproject.org/ENCBS141IFN/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from MCF-7 (ENCLB521ROC)

description:
https://www.encodeproject.org/experiments/ENCSR309ELI/
***************
biological replicate number: 1
technical replicate number: 1
description: ZBTB1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR309ELI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2017-09-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB521ROC
size range: 450-650

value: 69 year

value: female

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS868OVR at ENCODE; https://www.encodeproject.org/ENCBS868OVR/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from K562 (ENCLB810UVG)

description:
https://www.encodeproject.org/experiments/ENCSR690GUG/
***************
biological replicate number: 2
technical replicate number: 1
description: U2AF1 ChIP-seq in K562
experiment encode accession: ENCSR690GUG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR966DOU
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB810UVG
size range: 200-400

source_name: Homo sapiens K562 immortalized cell line

value: U2AF1 ChIP-seq in K562

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS828SMC at ENCODE; https://www.encodeproject.org/ENCBS828SMC/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HEK293 (ENCLB389QFT)

description:
https://www.encodeproject.org/experiments/ENCSR502KPJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF843 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR502KPJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB389QFT
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF843 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF843 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS243XVF at ENCODE; https://www.encodeproject.org/ENCBS243XVF/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from MCF-7 (ENCLB030IKN)

description:
https://www.encodeproject.org/experiments/ENCSR546KCN/
***************
biological replicate number: 3
technical replicate number: 1
description: eGFP-FOSL2 ChIP-seq on human MCF-7
experiment encode accession: ENCSR546KCN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR907JTZ
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB030IKN
size range: 200-800

value: MCF7 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to FOSL2

value: Kevin White, UChicago

value: 69 year

value: adult

value: ENCBS948MKG at ENCODE; https://www.encodeproject.org/ENCBS948MKG/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_HA15; http://web.expasy.org/cellosaurus/CVCL_HA15


title: ChIP-seq from KMS-11 (ENCLB408MHV)

description:
https://www.encodeproject.org/experiments/ENCSR539TKY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR539TKY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR720GSE
encode release date: 2017-01-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB408MHV
size range: 200-600
nucleic acid starting quantity: 485
nucleic acid starting quantity units: ng

source_name: Homo sapiens KMS-11 immortalized cell line

value: multiple myeloma

value: female

value: 67 year

value: Bradley Bernstein, Broad

value: ENCBS682HMC at ENCODE; https://www.encodeproject.org/ENCBS682HMC/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from HEK293 (ENCLB651GJU)

description:
https://www.encodeproject.org/experiments/ENCSR604CNJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF416 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR604CNJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB651GJU
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF416 under the control of a CMV promoter.

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS685NPT at ENCODE; https://www.encodeproject.org/ENCBS685NPT/


title: Hi-C from Caki2 (ENCLB555CZE)

description:
https://www.encodeproject.org/experiments/ENCSR401TBQ/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on Caki2
experiment encode accession: ENCSR401TBQ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB555CZE

source_name: Homo sapiens Caki2 immortalized cell line

value: 69 year

value: adult

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS461KDA at ENCODE; https://www.encodeproject.org/ENCBS461KDA/

value: Derived from ENCODE donor ENCDO140IFG; https://www.encodeproject.org/ENCDO140IFG/

value: ENCODE dbxrefs Cellosaurus CVCL_0235; http://web.expasy.org/cellosaurus/CVCL_0235


title: ChIP-seq from A549 (ENCLB209ACN)

description:
https://www.encodeproject.org/experiments/ENCSR496AXR/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on human A549 produced by the Snyder lab
experiment encode accession: ENCSR496AXR
assay title: ChIP-seq
encode release date: 2012-05-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB209ACN

source_name: Homo sapiens A549 immortalized cell line

value: Control

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: 58 year

value: ENCBS159AAA at ENCODE; https://www.encodeproject.org/ENCBS159AAA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ENCODE dbxrefs A549; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=A549

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from K562 (ENCLB582MXR)

description:
https://www.encodeproject.org/experiments/ENCSR675JUK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ELF1 tagged K562 cell line.
experiment encode accession: ENCSR675JUK
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Kevin White, UChicago
library encode accession: ENCLB582MXR
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ELF1 fusion protein

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ELF1

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS556OQY at ENCODE; https://www.encodeproject.org/ENCBS556OQY/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ81; http://web.expasy.org/cellosaurus/CVCL_GZ81


title: ChIP-seq from KMS-11 (ENCLB583RQS)

description:
https://www.encodeproject.org/experiments/ENCSR539TKY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR539TKY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR720GSE
encode release date: 2017-01-15
lab: Bradley Bernstein, Broad
library encode accession: ENCLB583RQS
size range: 200-600
nucleic acid starting quantity: 585
nucleic acid starting quantity units: ng

value: multiple myeloma

value: adult

value: 67 year

value: Bradley Bernstein, Broad

value: ENCBS987CHP at ENCODE; https://www.encodeproject.org/ENCBS987CHP/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: Hi-C from Caki2 (ENCLB858SVS)

description:
https://www.encodeproject.org/experiments/ENCSR401TBQ/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on Caki2
experiment encode accession: ENCSR401TBQ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB858SVS

value: 69 year

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS768KGZ at ENCODE; https://www.encodeproject.org/ENCBS768KGZ/

value: Derived from ENCODE donor ENCDO140IFG; https://www.encodeproject.org/ENCDO140IFG/

value: ENCODE dbxrefs Cellosaurus CVCL_0235; http://web.expasy.org/cellosaurus/CVCL_0235


title: ChIP-seq from HEK293 (ENCLB460CLE)

description:
https://www.encodeproject.org/experiments/ENCSR502KPJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF843 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR502KPJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB460CLE
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF843 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS510KXV at ENCODE; https://www.encodeproject.org/ENCBS510KXV/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from A549 (ENCLB083KQY)

description:
https://www.encodeproject.org/experiments/ENCSR496AXR/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on human A549 produced by the Snyder lab
experiment encode accession: ENCSR496AXR
assay title: ChIP-seq
encode release date: 2012-05-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB083KQY

value: Control

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: adult

value: 58 year

value: ENCBS159AAA at ENCODE; https://www.encodeproject.org/ENCBS159AAA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ENCODE dbxrefs A549; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=A549

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from K562 (ENCLB163OJS)

description:
https://www.encodeproject.org/experiments/ENCSR690GUG/
***************
biological replicate number: 1
technical replicate number: 1
description: U2AF1 ChIP-seq in K562
experiment encode accession: ENCSR690GUG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR966DOU
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB163OJS
size range: 200-400

value: immortalized cell line

value: U2AF1 ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS268OJH at ENCODE; https://www.encodeproject.org/ENCBS268OJH/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from IMR-90 (ENCLB563AHW)

description:
https://www.encodeproject.org/experiments/ENCSR513UQG/
***************
biological replicate number: 2
technical replicate number: 1
description: USF2 ChIP-seq on human IMR90
experiment encode accession: ENCSR513UQG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR970FKL
encode release date: 2017-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB563AHW
size range: 150-350

source_name: Homo sapiens IMR-90 primary cell female fetal (16 weeks)

value: primary cell

value: Fetal lung fibroblasts

value: fetal

value: female

value: 16 week

value: unknown

value: Michael Snyder, Stanford

value: ENCBS073JZM at ENCODE; https://www.encodeproject.org/ENCBS073JZM/

value: Derived from ENCODE donor ENCDO000AAX; https://www.encodeproject.org/ENCDO000AAX/

value: ENCODE dbxrefs Cellosaurus CVCL_0347; http://web.expasy.org/cellosaurus/CVCL_0347

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-186.aspx


title: ChIP-seq from IMR-90 (ENCLB928PDD)

description:
https://www.encodeproject.org/experiments/ENCSR513UQG/
***************
biological replicate number: 1
technical replicate number: 1
description: USF2 ChIP-seq on human IMR90
experiment encode accession: ENCSR513UQG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR970FKL
encode release date: 2017-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB928PDD
size range: 150-350

source_name: Homo sapiens IMR-90 primary cell female embryo (16 weeks)

value: embryonic

value: ENCBS275EWD at ENCODE; https://www.encodeproject.org/ENCBS275EWD/

value: derived from ENCODE donor ENCDO000AAX; https://www.encodeproject.org/ENCDO000AAX/


title: ChIP-seq from K562 (ENCLB415VWE)

description:
https://www.encodeproject.org/experiments/ENCSR532KTI/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-GTF2E2 ChIP-seq on human K562
experiment encode accession: ENCSR532KTI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR021JFW
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB415VWE
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-GTF2E2 fusion protein

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to GTF2E2

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS182OZC at ENCODE; https://www.encodeproject.org/ENCBS182OZC/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ88; http://web.expasy.org/cellosaurus/CVCL_GZ88


title: ChIP-seq from HepG2 (ENCLB088EEH)

description:
https://www.encodeproject.org/experiments/ENCSR465BWW/
***************
biological replicate number: 1
technical replicate number: 1
description: SRSF1 ChIP-seq in HepG2
experiment encode accession: ENCSR465BWW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR735QJO
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB088EEH
size range: 200-400

source_name: Homo sapiens HepG2 immortalized cell line

value: SRSF1 ChIP-seq in HepG2

value: male

value: Xiang-Dong Fu, UCSD

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS692AEI at ENCODE; https://www.encodeproject.org/ENCBS692AEI/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from A549 (ENCLB862MLL)

description:
https://www.encodeproject.org/experiments/ENCSR618ICR/
***************
biological replicate number: 2
technical replicate number: 1
description: RCOR1 ChIP-seq on human A549
experiment encode accession: ENCSR618ICR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR949BZP, ENCSR496AXR
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB862MLL
size range: 150-350

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: Michael Snyder, Stanford

value: 58 year

value: ENCBS808EGR at ENCODE; https://www.encodeproject.org/ENCBS808EGR/

value: derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ENCODE dbxrefs A549; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=A549

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from K562 (ENCLB461ZRH)

description:
https://www.encodeproject.org/experiments/ENCSR603XLW/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF589 ChIP-seq on human K562
experiment encode accession: ENCSR603XLW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR606XES
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB461ZRH
size range: 200-800
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF589

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS912VQO at ENCODE; https://www.encodeproject.org/ENCBS912VQO/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_HA05; http://web.expasy.org/cellosaurus/CVCL_HA05


title: ATAC_Ring1bflfl_EtOH

city: Houston

first: H. Courtney

last: Hodges

state: TX

address: 1 Baylor Plaza, BCM 229

department: Department of Molecular & Cellular Biology

institute: Baylor College of Medicine

description: ATAC-seq in Ring1bflfl mES cells following ethanol treatment

data_processing:
Basecalls performed using Illumina CASAVA version 1.8.2
Reads were trimmed to remove adapters, then aligned to the mm9 genome assembly using bowtie version 2.1.0, requiring mapping qualities > 10. Duplicate reads were discarded.
Peaks were called by creating pseudofragments of length 200 bp around each ATAC-seq fragment end, then using MACS 2.1.0 with with default settings.
Peaks with less than 10 reads per million were discarded to ensure high-quality peak calls.
Genome_build: mm9
Supplementary_files_format_and_content: bigWig files were generated by creating pseudofragments of length 200 bp centered over all ATAC-seq read fragments, then calculating the basepair coverage for each replicate using Bedtools, normalizing by the total number of reads within called peaks. For samples with multiple replicates, values in the bigWig files represent coverage calculated in this way averaged across both replicates using bwtool.

organism: Mus musculus

source_name: Mouse embryonic stem cells

growth_protocol: Cells are grown in DMEM media supplemented with 15% FBS and LIF.

extract_protocol:
Isolated nuclei were obtained from lysed cells and transposed with Tn5 transposase. The resulting tagmented fragments were barcoded and sequenced using Illumina sequencing.
All libraries were barcoded and prepared for sequencing using standard Illumina protocols.

treatment_protocol: Conditional knockout cells (Ring1bflfl) were incubated with either ethanol or 0.8 uM 4-hydroxytamoxifen for 48 h. Cells were then harvested 72 h after the start of the treatment.

tag: passage

tag: strain

tag: treatment

value: control

tag: genotype/variation


title: ChIP-seq from RWPE1 (ENCLB323YFJ)

description:
https://www.encodeproject.org/experiments/ENCSR303GFI/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on human RWPE1
experiment encode accession: ENCSR303GFI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR061MKW
encode release date: 2017-07-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB323YFJ
size range: 450-650

source_name: Homo sapiens RWPE1 immortalized cell line

value: CTCF

value: male

value: Michael Snyder, Stanford

value: normal

value: 54 year

value: ENCBS875FPF at ENCODE; https://www.encodeproject.org/ENCBS875FPF/

value: derived from ENCODE donor ENCDO000ADM; https://www.encodeproject.org/ENCDO000ADM/


title: ATAC_Ring1bflfl_Tam

description: ATAC-seq in Ring1bflfl mES cells following tamoxifen treatment

value: tamoxifen

value: deletion of Ring1b


title: ChIP-seq from A549 (ENCLB169PHV)

description:
https://www.encodeproject.org/experiments/ENCSR618ICR/
***************
biological replicate number: 1
technical replicate number: 1
description: RCOR1 ChIP-seq on human A549
experiment encode accession: ENCSR618ICR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR949BZP, ENCSR496AXR
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB169PHV
size range: 150-350

value: immortalized cell line

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: 58 year

value: ENCBS159AAA at ENCODE; https://www.encodeproject.org/ENCBS159AAA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ENCODE dbxrefs A549; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=A549

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from LNCAP (ENCLB827RAP)

description:
https://www.encodeproject.org/experiments/ENCSR300XAV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human LNCAP
experiment encode accession: ENCSR300XAV
assay title: ChIP-seq
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB827RAP
size range: 450-650

source_name: Homo sapiens LNCAP immortalized cell line

value: Control

value: LNCAP

value: prostate adenocarcinoma

value: 50 year

value: adult

value: ENCBS535BWO at ENCODE; https://www.encodeproject.org/ENCBS535BWO/

value: derived from ENCODE donor ENCDO000ACX; https://www.encodeproject.org/ENCDO000ACX/


title: microRNA-seq from midbrain (ENCLB616AHO)

description:
https://www.encodeproject.org/experiments/ENCSR591SJC/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR591SJC
assay title: microRNA-seq
assembly: mm10
encode release date: 2017-08-15
lab: Ali Mortazavi, UCI
library encode accession: ENCLB616AHO
size range: <30

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days)

value: midbrain

value: tissue

value: Midbrain from 88 embryonic 12.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS280TPA at ENCODE; https://www.encodeproject.org/ENCBS280TPA/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from K562 (ENCLB288PTN)

description:
https://www.encodeproject.org/experiments/ENCSR448UKK/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZKSCAN8 ChIP-seq on human K562
experiment encode accession: ENCSR448UKK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849DZW
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB288PTN
size range: 200-800

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZKSCAN8 fusion protein

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF192

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS541VKI at ENCODE; https://www.encodeproject.org/ENCBS541VKI/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ98; http://web.expasy.org/cellosaurus/CVCL_GZ98


title: ChIP-seq from RWPE1 (ENCLB160JPF)

description:
https://www.encodeproject.org/experiments/ENCSR303GFI/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human RWPE1
experiment encode accession: ENCSR303GFI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR061MKW
encode release date: 2017-07-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB160JPF
size range: 450-650

value: CTCF

value: male

value: Michael Snyder, Stanford

value: normal

value: 54 year

value: adult

value: ENCBS124FCL at ENCODE; https://www.encodeproject.org/ENCBS124FCL/

value: derived from ENCODE donor ENCDO000ADM; https://www.encodeproject.org/ENCDO000ADM/


title: ChIP-seq from LNCAP (ENCLB793TTX)

description:
https://www.encodeproject.org/experiments/ENCSR300XAV/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human LNCAP
experiment encode accession: ENCSR300XAV
assay title: ChIP-seq
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB793TTX
size range: 450-650

value: Control

value: LNCAP

value: immortalized cell line

value: prostate adenocarcinoma

value: 50 year

value: ENCBS918PKZ at ENCODE; https://www.encodeproject.org/ENCBS918PKZ/

value: derived from ENCODE donor ENCDO000ACX; https://www.encodeproject.org/ENCDO000ACX/


title: microRNA-seq from embryonic facial prominence (ENCLB053DVS)

description:
https://www.encodeproject.org/experiments/ENCSR549EOE/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on embryonic 10.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR549EOE
assay title: microRNA-seq
assembly: mm10
encode release date: 2017-08-15
lab: Ali Mortazavi, UCI
library encode accession: ENCLB053DVS
size range: <30

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (10.5 days)

value: embryonic facial prominence

value: tissue

value: Craniofacial prominence from 51 embryonic 10.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS199YOQ at ENCODE; https://www.encodeproject.org/ENCBS199YOQ/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: Hi-C from A549 (ENCLB571HTP)

description:
https://www.encodeproject.org/experiments/ENCSR444WCZ/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on A549
experiment encode accession: ENCSR444WCZ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB571HTP

value: male

value: John Stamatoyannopoulos, UW

value: 58 year

value: adult

value: ENCBS009OIC at ENCODE; https://www.encodeproject.org/ENCBS009OIC/

value: derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: microRNA-seq from hindbrain (ENCLB344UXS)

description:
https://www.encodeproject.org/experiments/ENCSR531LRJ/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR531LRJ
assay title: microRNA-seq
assembly: mm10
encode release date: 2017-08-15
lab: Ali Mortazavi, UCI
library encode accession: ENCLB344UXS
size range: <30

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days)

value: hindbrain

value: Hindbrain from 120 embryonic 12.5 day mice

value: ENCBS406RIE at ENCODE; https://www.encodeproject.org/ENCBS406RIE/


title: ChIP-seq from suprapubic skin (ENCLB435LGF)

description:
https://www.encodeproject.org/experiments/ENCSR300KUL/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on suprapubic skin
experiment encode accession: ENCSR300KUL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR915TAF
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB435LGF

source_name: Homo sapiens suprapubic skin tissue female adult (51 year)

value: suprapubic skin

value: tissue

value: female

value: Richard Myers, HAIB

value: 51 year

value: ENCBS588FXB at ENCODE; https://www.encodeproject.org/ENCBS588FXB/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/c8b1c1d7-21b2-42ca-b898-8abf625ea8af/@@download/attachment/84266.svs


title: ChIP-seq from HepG2 (ENCLB515USM)

description:
https://www.encodeproject.org/experiments/ENCSR382PVA/
***************
biological replicate number: 1
technical replicate number: 1
description: GTF2F1 ChIP-seq in HepG2
experiment encode accession: ENCSR382PVA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR735QJO
encode release date: 2017-02-27
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB515USM
size range: 200-400

value: immortalized cell line

value: GTF2F1 ChIP-seq in HepG2

value: male

value: Xiang-Dong Fu, UCSD

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS865ZOH at ENCODE; https://www.encodeproject.org/ENCBS865ZOH/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: microRNA-seq from hindbrain (ENCLB958SLQ)

description:
https://www.encodeproject.org/experiments/ENCSR531LRJ/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR531LRJ
assay title: microRNA-seq
assembly: mm10
encode release date: 2017-08-15
lab: Ali Mortazavi, UCI
library encode accession: ENCLB958SLQ
size range: <30

value: hindbrain

value: Hindbrain from 88 embryonic 12.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS022IBY at ENCODE; https://www.encodeproject.org/ENCBS022IBY/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from K562 (ENCLB734AIZ)

description:
https://www.encodeproject.org/experiments/ENCSR603XLW/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF589 ChIP-seq on human K562
experiment encode accession: ENCSR603XLW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR606XES
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB734AIZ
size range: 200-800
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF589 fusion protein

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF589

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS070CNU at ENCODE; https://www.encodeproject.org/ENCBS070CNU/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_HA05; http://web.expasy.org/cellosaurus/CVCL_HA05


title: ChIP-seq from transverse colon (ENCLB077BZM)

description:
https://www.encodeproject.org/experiments/ENCSR602GPF/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Wed Aug 24 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR602GPF
assay title: ChIP-seq
encode release date: 2016-11-09
lab: Richard Myers, HAIB
library encode accession: ENCLB077BZM

source_name: Homo sapiens transverse colon tissue female adult (51 year)

value: Control

value: transverse colon

value: tissue

value: Richard Myers, HAIB

value: 51 year

value: ENCBS767MTN at ENCODE; https://www.encodeproject.org/ENCBS767MTN/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/7b223824-1a15-4554-b9a1-88b1d9060190/@@download/attachment/84280.svs


title: microRNA-seq from liver (ENCLB322YPE)

description:
https://www.encodeproject.org/experiments/ENCSR453ESQ/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR453ESQ
assay title: microRNA-seq
assembly: mm10
encode release date: 2017-08-15
lab: Ali Mortazavi, UCI
library encode accession: ENCLB322YPE
size range: <30

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (12.5 days)

value: liver

value: Liver from 120 embryonic 12.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS236ISK at ENCODE; https://www.encodeproject.org/ENCBS236ISK/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: Hi-C from A549 (ENCLB222WYT)

description:
https://www.encodeproject.org/experiments/ENCSR444WCZ/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on A549
experiment encode accession: ENCSR444WCZ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB222WYT

source_name: Homo sapiens A549 immortalized cell line

value: immortalized cell line

value: male

value: John Stamatoyannopoulos, UW

value: 58 year

value: adult

value: ENCBS876BXS at ENCODE; https://www.encodeproject.org/ENCBS876BXS/

value: derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from K562 (ENCLB009PDX)

description:
https://www.encodeproject.org/experiments/ENCSR532KTI/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-GTF2E2 ChIP-seq on human K562
experiment encode accession: ENCSR532KTI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR021JFW
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB009PDX
size range: 200-800

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to GTF2E2

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS936ECY at ENCODE; https://www.encodeproject.org/ENCBS936ECY/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ88; http://web.expasy.org/cellosaurus/CVCL_GZ88