title: ChIP-seq from A549 (ENCLB216PPK)

description:
https://www.encodeproject.org/experiments/ENCSR887SZF/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR887SZF
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB216PPK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: Tim Reddy, Duke

value: ENCBS116MCD at ENCODE; https://www.encodeproject.org/ENCBS116MCD/


title: ChIP-seq from A549 (ENCLB531GYU)

status: Public on Jan 10 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR792VMN/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR792VMN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB531GYU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 10 hours

tag: antibody

tag: line

value: immortalized cell line

tag: biosample encode accession

tag: dev stage

value: adult

tag: age

value: 58 year

tag: Sex

value: male

tag: lab

tag: treatments

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

tag: link

value: ENCBS566UAZ at ENCODE; https://www.encodeproject.org/ENCBS566UAZ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB344PDO)

description:
https://www.encodeproject.org/experiments/ENCSR853DWE/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR853DWE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR909GTY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB344PDO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 7 hours

value: CEBPB

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS515PAZ at ENCODE; https://www.encodeproject.org/ENCBS515PAZ/


title: ChIP-seq from A549 (ENCLB482CHD)

description:
https://www.encodeproject.org/experiments/ENCSR868MLT/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR868MLT
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR887SZF
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB482CHD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 6 hours

value: ENCBS712HYP at ENCODE; https://www.encodeproject.org/ENCBS712HYP/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB359WCM)

description:
https://www.encodeproject.org/experiments/ENCSR792VMN/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR792VMN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB359WCM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS304EKC at ENCODE; https://www.encodeproject.org/ENCBS304EKC/


title: ChIP-seq from A549 (ENCLB052EAU)

description:
https://www.encodeproject.org/experiments/ENCSR773NQB/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR773NQB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR491TAD
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB052EAU
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 30 minutes

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS582CLM at ENCODE; https://www.encodeproject.org/ENCBS582CLM/


title: ChIP-seq from A549 (ENCLB208WPP)

description:
https://www.encodeproject.org/experiments/ENCSR783SNV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR783SNV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR838ZAU
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB208WPP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line

value: Tim Reddy, Duke

value: ENCBS708WVC at ENCODE; https://www.encodeproject.org/ENCBS708WVC/


title: ChIP-seq from A549 (ENCLB312SSJ)

description:
https://www.encodeproject.org/experiments/ENCSR838ZAU/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR838ZAU
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB312SSJ
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: immortalized cell line

value: ENCBS818CJE at ENCODE; https://www.encodeproject.org/ENCBS818CJE/


title: ChIP-seq from A549 (ENCLB040GRZ)

description:
https://www.encodeproject.org/experiments/ENCSR775UFR/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR775UFR
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB040GRZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: 58 year

value: male

value: ENCBS505STB at ENCODE; https://www.encodeproject.org/ENCBS505STB/


title: ChIP-seq from A549 (ENCLB103TTX)

description:
https://www.encodeproject.org/experiments/ENCSR775UFR/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR775UFR
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB103TTX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS311CCO at ENCODE; https://www.encodeproject.org/ENCBS311CCO/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB362APY)

description:
https://www.encodeproject.org/experiments/ENCSR774KCU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR774KCU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR274VPI
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB362APY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 8 hours

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS606KBB at ENCODE; https://www.encodeproject.org/ENCBS606KBB/


title: ChIP-seq from A549 (ENCLB228FQW)

description:
https://www.encodeproject.org/experiments/ENCSR773NQB/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR773NQB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR491TAD
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB228FQW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS540LZG at ENCODE; https://www.encodeproject.org/ENCBS540LZG/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB000VPO)

description:
https://www.encodeproject.org/experiments/ENCSR775TAI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR775TAI
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR838ZAU
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB000VPO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS090WQR at ENCODE; https://www.encodeproject.org/ENCBS090WQR/


title: ChIP-seq from A549 (ENCLB544IFM)

description:
https://www.encodeproject.org/experiments/ENCSR730UDX/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR730UDX
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB544IFM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 5 hours

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS634TKN at ENCODE; https://www.encodeproject.org/ENCBS634TKN/


title: ChIP-seq from A549 (ENCLB756RPK)

description:
https://www.encodeproject.org/experiments/ENCSR774KCU/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR774KCU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR274VPI
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB756RPK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS086UGG at ENCODE; https://www.encodeproject.org/ENCBS086UGG/


title: ChIP-seq from A549 (ENCLB897VWI)

description:
https://www.encodeproject.org/experiments/ENCSR770OTI/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR770OTI
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB897VWI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 2 hours

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS313YTO at ENCODE; https://www.encodeproject.org/ENCBS313YTO/


title: ChIP-seq from A549 (ENCLB549QET)

description:
https://www.encodeproject.org/experiments/ENCSR752AQK/
***************
biological replicate number: 3
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR752AQK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR730UDX
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB549QET
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: adult

value: 58 year

value: ENCBS713DBQ at ENCODE; https://www.encodeproject.org/ENCBS713DBQ/


title: ChIP-seq from A549 (ENCLB562LAQ)

description:
https://www.encodeproject.org/experiments/ENCSR770OTI/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR770OTI
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB562LAQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS705DFQ at ENCODE; https://www.encodeproject.org/ENCBS705DFQ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB073ZLD)

description:
https://www.encodeproject.org/experiments/ENCSR730UDX/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR730UDX
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB073ZLD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: ENCBS492NSR at ENCODE; https://www.encodeproject.org/ENCBS492NSR/


title: ChIP-seq from A549 (ENCLB588UQE)

description:
https://www.encodeproject.org/experiments/ENCSR752AQK/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR752AQK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR730UDX
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB588UQE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS335SZC at ENCODE; https://www.encodeproject.org/ENCBS335SZC/


title: ChIP-seq from A549 (ENCLB005BBM)

description:
https://www.encodeproject.org/experiments/ENCSR752AQK/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR752AQK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR730UDX
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB005BBM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS374UXY at ENCODE; https://www.encodeproject.org/ENCBS374UXY/


title: ChIP-seq from A549 (ENCLB166QTZ)

description:
https://www.encodeproject.org/experiments/ENCSR730UDX/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR730UDX
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB166QTZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS160CCZ at ENCODE; https://www.encodeproject.org/ENCBS160CCZ/


title: ChIP-seq from A549 (ENCLB344ASA)

description:
https://www.encodeproject.org/experiments/ENCSR716XDB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR716XDB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB344ASA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS076NFI at ENCODE; https://www.encodeproject.org/ENCBS076NFI/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB153FZH)

description:
https://www.encodeproject.org/experiments/ENCSR726MAP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR726MAP
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR344ERJ
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB153FZH
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS281AZP at ENCODE; https://www.encodeproject.org/ENCBS281AZP/


title: ChIP-seq from A549 (ENCLB382NWX)

description:
https://www.encodeproject.org/experiments/ENCSR711MVL/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR711MVL
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB382NWX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 3 hours

value: adult

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS522ZOC at ENCODE; https://www.encodeproject.org/ENCBS522ZOC/


title: ChIP-seq from A549 (ENCLB434ODN)

description:
https://www.encodeproject.org/experiments/ENCSR726MAP/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR726MAP
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR344ERJ
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB434ODN
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS944KBZ at ENCODE; https://www.encodeproject.org/ENCBS944KBZ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB112HZD)

description:
https://www.encodeproject.org/experiments/ENCSR720DXT/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR720DXT
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR344ERJ
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB112HZD
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS009FYJ at ENCODE; https://www.encodeproject.org/ENCBS009FYJ/


title: ChIP-seq from A549 (ENCLB405UQB)

description:
https://www.encodeproject.org/experiments/ENCSR720DXT/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR720DXT
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR344ERJ
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB405UQB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS678LVM at ENCODE; https://www.encodeproject.org/ENCBS678LVM/


title: ChIP-seq from A549 (ENCLB217JNN)

description:
https://www.encodeproject.org/experiments/ENCSR711MVL/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR711MVL
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB217JNN
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: ENCBS418DNO at ENCODE; https://www.encodeproject.org/ENCBS418DNO/


title: ChIP-seq from A549 (ENCLB975WMZ)

description:
https://www.encodeproject.org/experiments/ENCSR775UFR/
***************
biological replicate number: 3
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR775UFR
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB975WMZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS397CMU at ENCODE; https://www.encodeproject.org/ENCBS397CMU/


title: ChIP-seq from A549 (ENCLB570WAL)

description:
https://www.encodeproject.org/experiments/ENCSR711MVL/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR711MVL
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB570WAL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS724CGL at ENCODE; https://www.encodeproject.org/ENCBS724CGL/


title: ChIP-seq from A549 (ENCLB378YOD)

description:
https://www.encodeproject.org/experiments/ENCSR770OTI/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR770OTI
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB378YOD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS180FQJ at ENCODE; https://www.encodeproject.org/ENCBS180FQJ/


title: ChIP-seq from A549 (ENCLB981CZL)

description:
https://www.encodeproject.org/experiments/ENCSR766NHB/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR766NHB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR310TYO
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB981CZL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS552KSE at ENCODE; https://www.encodeproject.org/ENCBS552KSE/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB143RFN)

description:
https://www.encodeproject.org/experiments/ENCSR701TCU/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR701TCU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB143RFN
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: male

value: ENCBS121DKS at ENCODE; https://www.encodeproject.org/ENCBS121DKS/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB835DIS)

description:
https://www.encodeproject.org/experiments/ENCSR692JHM/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR692JHM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR548SPY
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB835DIS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 1 hour

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS705AWL at ENCODE; https://www.encodeproject.org/ENCBS705AWL/


title: ChIP-seq from A549 (ENCLB341IGK)

description:
https://www.encodeproject.org/experiments/ENCSR692JHM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR692JHM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR548SPY
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB341IGK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS810BRT at ENCODE; https://www.encodeproject.org/ENCBS810BRT/


title: ChIP-seq from A549 (ENCLB019CPP)

description:
https://www.encodeproject.org/experiments/ENCSR690JTW/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR690JTW
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB019CPP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 4 hours

value: Control

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS527MAH at ENCODE; https://www.encodeproject.org/ENCBS527MAH/


title: ChIP-seq from A549 (ENCLB133ODT)

description:
https://www.encodeproject.org/experiments/ENCSR690JTW/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR690JTW
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB133ODT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS034OEE at ENCODE; https://www.encodeproject.org/ENCBS034OEE/


title: ChIP-seq from A549 (ENCLB222KOK)

description:
https://www.encodeproject.org/experiments/ENCSR690JTW/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR690JTW
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB222KOK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS880JFJ at ENCODE; https://www.encodeproject.org/ENCBS880JFJ/


title: ChIP-seq from A549 (ENCLB726KSO)

description:
https://www.encodeproject.org/experiments/ENCSR701TCU/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR701TCU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB726KSO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS610CLZ at ENCODE; https://www.encodeproject.org/ENCBS610CLZ/


title: ChIP-seq from A549 (ENCLB136AFU)

description:
https://www.encodeproject.org/experiments/ENCSR686BQM/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR686BQM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB136AFU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS545DBX at ENCODE; https://www.encodeproject.org/ENCBS545DBX/


title: ChIP-seq from A549 (ENCLB759LYG)

description:
https://www.encodeproject.org/experiments/ENCSR690HWX/
***************
biological replicate number: 2
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR690HWX
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR711MVL
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB759LYG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS548JCP at ENCODE; https://www.encodeproject.org/ENCBS548JCP/


title: ChIP-seq from A549 (ENCLB546JCO)

description:
https://www.encodeproject.org/experiments/ENCSR691GRA/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR691GRA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR274VPI
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB546JCO
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS573ZZW at ENCODE; https://www.encodeproject.org/ENCBS573ZZW/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB693OHT)

description:
https://www.encodeproject.org/experiments/ENCSR686HIU/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR686HIU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR690JTW
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB693OHT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS075ZKJ at ENCODE; https://www.encodeproject.org/ENCBS075ZKJ/


title: ChIP-seq from A549 (ENCLB111JCK)

description:
https://www.encodeproject.org/experiments/ENCSR691GRA/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR691GRA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR274VPI
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB111JCK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS686TDM at ENCODE; https://www.encodeproject.org/ENCBS686TDM/


title: ChIP-seq from A549 (ENCLB111TTX)

description:
https://www.encodeproject.org/experiments/ENCSR686PFM/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR686PFM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB111TTX
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS277NZL at ENCODE; https://www.encodeproject.org/ENCBS277NZL/


title: ChIP-seq from A549 (ENCLB318TNI)

description:
https://www.encodeproject.org/experiments/ENCSR686PFM/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR686PFM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB318TNI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS821RUT at ENCODE; https://www.encodeproject.org/ENCBS821RUT/


title: ChIP-seq from A549 (ENCLB037WLX)

description:
https://www.encodeproject.org/experiments/ENCSR690HWX/
***************
biological replicate number: 1
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR690HWX
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR711MVL
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB037WLX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS883MPQ at ENCODE; https://www.encodeproject.org/ENCBS883MPQ/


title: ChIP-seq from A549 (ENCLB164RZJ)

description:
https://www.encodeproject.org/experiments/ENCSR686HIU/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR686HIU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR690JTW
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB164RZJ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: male

value: ENCBS004PAW at ENCODE; https://www.encodeproject.org/ENCBS004PAW/


title: ChIP-seq from A549 (ENCLB241KYA)

description:
https://www.encodeproject.org/experiments/ENCSR686BQM/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR686BQM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB241KYA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS923XGQ at ENCODE; https://www.encodeproject.org/ENCBS923XGQ/


title: ChIP-seq from A549 (ENCLB023TRQ)

description:
https://www.encodeproject.org/experiments/ENCSR686BIE/
***************
biological replicate number: 3
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR686BIE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB023TRQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS644OKR at ENCODE; https://www.encodeproject.org/ENCBS644OKR/


title: ChIP-seq from A549 (ENCLB768PAR)

description:
https://www.encodeproject.org/experiments/ENCSR686BQM/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR686BQM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB768PAR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS237FNI at ENCODE; https://www.encodeproject.org/ENCBS237FNI/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB278HLH)

description:
https://www.encodeproject.org/experiments/ENCSR686BIE/
***************
biological replicate number: 2
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR686BIE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB278HLH
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS401GHI at ENCODE; https://www.encodeproject.org/ENCBS401GHI/


title: ChIP-seq from A549 (ENCLB977QSB)

description:
https://www.encodeproject.org/experiments/ENCSR686BIE/
***************
biological replicate number: 1
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR686BIE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB977QSB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS864LYS at ENCODE; https://www.encodeproject.org/ENCBS864LYS/


title: ChIP-seq from A549 (ENCLB966YHD)

description:
https://www.encodeproject.org/experiments/ENCSR677QYM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR677QYM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR491TAD
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB966YHD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS884PLU at ENCODE; https://www.encodeproject.org/ENCBS884PLU/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB015YHV)

description:
https://www.encodeproject.org/experiments/ENCSR673OGC/
***************
biological replicate number: 1
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR673OGC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB015YHV
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS238ZNP at ENCODE; https://www.encodeproject.org/ENCBS238ZNP/


title: ChIP-seq from A549 (ENCLB476KBJ)

description:
https://www.encodeproject.org/experiments/ENCSR673OGC/
***************
biological replicate number: 2
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR673OGC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB476KBJ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS308VXK at ENCODE; https://www.encodeproject.org/ENCBS308VXK/


title: ChIP-seq from A549 (ENCLB795QYM)

description:
https://www.encodeproject.org/experiments/ENCSR660RYY/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR660RYY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR872BBM
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB795QYM
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS108SIA at ENCODE; https://www.encodeproject.org/ENCBS108SIA/


title: ChIP-seq from A549 (ENCLB964VVT)

description:
https://www.encodeproject.org/experiments/ENCSR660RYY/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR660RYY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR872BBM
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB964VVT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS741LOB at ENCODE; https://www.encodeproject.org/ENCBS741LOB/


title: DNase-seq from A549 (ENCLB563TPN)

description:
https://www.encodeproject.org/experiments/ENCSR660OQE/
***************
biological replicate number: 4
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR660OQE
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB563TPN

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS185EJU at ENCODE; https://www.encodeproject.org/ENCBS185EJU/


title: DNase-seq from A549 (ENCLB255QTF)

description:
https://www.encodeproject.org/experiments/ENCSR660OQE/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR660OQE
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB255QTF

value: Tim Reddy, Duke

value: ENCBS117OOH at ENCODE; https://www.encodeproject.org/ENCBS117OOH/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: polyA mRNA RNA-seq from A549 (ENCLB887RMH)

description:
https://www.encodeproject.org/experiments/ENCSR656FIH/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR656FIH
assay title: polyA mRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR632DQP
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB887RMH
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

library_source: transcriptomic

molecule: total RNA

extract_protocol:
general protocol: https://www.encodeproject.org/documents/5533fb32-41f1-4c7a-b62d-0095a33cab20/@@download/attachment/01_RNA_HARVEST_and_ISOLATION_Reddy_GGR.pdf
extraction protocol: https://www.encodeproject.org/documents/53726435-7acc-4248-a5df-3eef6ea3b422/@@download/attachment/02_Rev%20D%20Quick%20Reference%20Card%2C%20PrepX%20PolyA%2048%20Protocol.pdf
extraction protocol: https://www.encodeproject.org/documents/5f9d4f74-4e39-4818-9ee9-d8e9b8004ceb/@@download/attachment/03_RevC%20Quick%20Reference%20Card%2C%20PrepX%20mRNA%2048%20Protocol.pdf
extraction protocol: https://www.encodeproject.org/documents/c72e898e-82c7-478d-b043-8945133a7724/@@download/attachment/04_Rev%20C%20Quick%20Reference%20Card%2C%20PrepX%20PCR%20Cleanup%2048%20Protocol.pdf
general protocol: https://www.encodeproject.org/documents/7a683e77-85ac-45f9-b1fa-b6ceb50ca1bc/@@download/attachment/05_POST_RNA_LIB_PREP_Reddy_GGR.pdf
extraction method: RNeasy Plus Mini Kit Qiagen cat#74134 plus additional on column Dnase treatment

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS744CZP at ENCODE; https://www.encodeproject.org/ENCBS744CZP/


title: ChIP-seq from A549 (ENCLB937KKU)

description:
https://www.encodeproject.org/experiments/ENCSR649JOE/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR649JOE
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB937KKU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS216FNP at ENCODE; https://www.encodeproject.org/ENCBS216FNP/


title: ChIP-seq from A549 (ENCLB449YOE)

description:
https://www.encodeproject.org/experiments/ENCSR649JOE/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR649JOE
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB449YOE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: male

value: ENCBS507ILZ at ENCODE; https://www.encodeproject.org/ENCBS507ILZ/


title: ChIP-seq from A549 (ENCLB953PEV)

description:
https://www.encodeproject.org/experiments/ENCSR646OPC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR646OPC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR887SZF
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB953PEV
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS370PMJ at ENCODE; https://www.encodeproject.org/ENCBS370PMJ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB172UYV)

description:
https://www.encodeproject.org/experiments/ENCSR639KFO/
***************
biological replicate number: 2
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR639KFO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB172UYV
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS533VQN at ENCODE; https://www.encodeproject.org/ENCBS533VQN/


title: ChIP-seq from A549 (ENCLB675IJA)

description:
https://www.encodeproject.org/experiments/ENCSR646EFO/
***************
biological replicate number: 3
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR646EFO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB675IJA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS321YPJ at ENCODE; https://www.encodeproject.org/ENCBS321YPJ/


title: ChIP-seq from A549 (ENCLB170LBF)

description:
https://www.encodeproject.org/experiments/ENCSR677QYM/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR677QYM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR491TAD
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB170LBF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS131VWP at ENCODE; https://www.encodeproject.org/ENCBS131VWP/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB220RTZ)

description:
https://www.encodeproject.org/experiments/ENCSR639KFO/
***************
biological replicate number: 3
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR639KFO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB220RTZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS149FQX at ENCODE; https://www.encodeproject.org/ENCBS149FQX/


title: ChIP-seq from A549 (ENCLB153SFP)

description:
https://www.encodeproject.org/experiments/ENCSR639KFO/
***************
biological replicate number: 1
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR639KFO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB153SFP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS395TGI at ENCODE; https://www.encodeproject.org/ENCBS395TGI/


title: ChIP-seq from A549 (ENCLB575SSO)

description:
https://www.encodeproject.org/experiments/ENCSR646EFO/
***************
biological replicate number: 2
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR646EFO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB575SSO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS224IPU at ENCODE; https://www.encodeproject.org/ENCBS224IPU/


title: polyA mRNA RNA-seq from A549 (ENCLB296PKA)

description:
https://www.encodeproject.org/experiments/ENCSR632DQP/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR632DQP
assay title: polyA mRNA RNA-seq
assembly: GRCh38
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB296PKA
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

value: Control

value: male

value: ENCBS951SRH at ENCODE; https://www.encodeproject.org/ENCBS951SRH/


title: ChIP-seq from A549 (ENCLB340TDE)

description:
https://www.encodeproject.org/experiments/ENCSR646OPC/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR646OPC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR887SZF
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB340TDE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS859WOF at ENCODE; https://www.encodeproject.org/ENCBS859WOF/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB901AJG)

description:
https://www.encodeproject.org/experiments/ENCSR627RBH/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR627RBH
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB901AJG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS547VCK at ENCODE; https://www.encodeproject.org/ENCBS547VCK/


title: ChIP-seq from A549 (ENCLB780QOE)

description:
https://www.encodeproject.org/experiments/ENCSR627RBH/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR627RBH
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB780QOE
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS318NXZ at ENCODE; https://www.encodeproject.org/ENCBS318NXZ/


title: ChIP-seq from A549 (ENCLB068ZEL)

description:
https://www.encodeproject.org/experiments/ENCSR636PIN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR636PIN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR838ZAU
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB068ZEL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS664ATC at ENCODE; https://www.encodeproject.org/ENCBS664ATC/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB996PSI)

description:
https://www.encodeproject.org/experiments/ENCSR636PIN/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR636PIN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR838ZAU
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB996PSI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS818RAI at ENCODE; https://www.encodeproject.org/ENCBS818RAI/


title: ChIP-seq from A549 (ENCLB047FMG)

description:
https://www.encodeproject.org/experiments/ENCSR611VYO/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR611VYO
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB047FMG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS686YFS at ENCODE; https://www.encodeproject.org/ENCBS686YFS/


title: ChIP-seq from A549 (ENCLB077XWK)

description:
https://www.encodeproject.org/experiments/ENCSR611VYO/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR611VYO
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB077XWK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: male

value: ENCBS128VHT at ENCODE; https://www.encodeproject.org/ENCBS128VHT/


title: ChIP-seq from A549 (ENCLB743YAY)

description:
https://www.encodeproject.org/experiments/ENCSR611VYO/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR611VYO
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB743YAY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS097WCE at ENCODE; https://www.encodeproject.org/ENCBS097WCE/


title: ChIP-seq from A549 (ENCLB408ZKM)

description:
https://www.encodeproject.org/experiments/ENCSR610RKF/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR610RKF
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR730UDX
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB408ZKM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS146HUP at ENCODE; https://www.encodeproject.org/ENCBS146HUP/


title: ChIP-seq from A549 (ENCLB654MKF)

description:
https://www.encodeproject.org/experiments/ENCSR649JOE/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR649JOE
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB654MKF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS643TDG at ENCODE; https://www.encodeproject.org/ENCBS643TDG/


title: ChIP-seq from A549 (ENCLB119ZQG)

description:
https://www.encodeproject.org/experiments/ENCSR608QCS/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR608QCS
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB119ZQG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS905SVC at ENCODE; https://www.encodeproject.org/ENCBS905SVC/


title: ChIP-seq from A549 (ENCLB384FBI)

description:
https://www.encodeproject.org/experiments/ENCSR614NPG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR614NPG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR344ERJ
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB384FBI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS780YEC at ENCODE; https://www.encodeproject.org/ENCBS780YEC/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB473RRB)

description:
https://www.encodeproject.org/experiments/ENCSR610RKF/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR610RKF
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR730UDX
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB473RRB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS962WOF at ENCODE; https://www.encodeproject.org/ENCBS962WOF/


title: polyA mRNA RNA-seq from A549 (ENCLB096HBG)

description:
https://www.encodeproject.org/experiments/ENCSR624RID/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR624RID
assay title: polyA mRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR632DQP
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB096HBG
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS389XCA at ENCODE; https://www.encodeproject.org/ENCBS389XCA/


title: ChIP-seq from A549 (ENCLB379HQK)

description:
https://www.encodeproject.org/experiments/ENCSR618MUP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR618MUP
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR274VPI
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB379HQK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS784LUH at ENCODE; https://www.encodeproject.org/ENCBS784LUH/


title: ChIP-seq from A549 (ENCLB764JLX)

description:
https://www.encodeproject.org/experiments/ENCSR608QCS/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR608QCS
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB764JLX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: immortalized cell line

value: ENCBS158PRQ at ENCODE; https://www.encodeproject.org/ENCBS158PRQ/


title: TNF_UM101_3

city: Baltimore

first: Theresa

middle: K

last: Hodges

state: MD

address: 801 W. Baltimore Street

department: Institute for Genome Sciences

institute: University of Maryland Baltimore

description: pretreated with 100 µM UM101 for 1h, then 10 ng/ml TNF for 3h

data_processing:
Raw data were analyzed using the TopHat read alignment tool and Homo sapiens genomic reference sequence (Ensembl version GRCh38.78).
Differential gene expression was analyzed using the DESeq R package (Bioconductor) and the negative binomial model
Criteria for significant differences in gene expression were (1) false discovery rate (FDR) <0.05, (2) expression level >10th percentile, and (3) ≥ 2-fold change.
Additional filtering for genes with ≥10 reads in at least one sample per set
Genome_build: GRCh38
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each sample

source_name: HMVECL

growth_protocol: Maintained in Promocell Endothelial Cell Growth Medium MV2 used at passage 3 to 10, and studied at postconfluence

extract_protocol:
Lysed with trizol as per manufacturer's protocol
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: cell line

value: HMVEC-L

tag: cell type

value: lung microvascular endothelial cells


title: TNF_UM101_2


title: ChIP-seq from A549 (ENCLB068CSR)

description:
https://www.encodeproject.org/experiments/ENCSR646EFO/
***************
biological replicate number: 1
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR646EFO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB068CSR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS355ZGM at ENCODE; https://www.encodeproject.org/ENCBS355ZGM/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB588RPP)

description:
https://www.encodeproject.org/experiments/ENCSR608QCS/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR608QCS
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB588RPP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS833VOT at ENCODE; https://www.encodeproject.org/ENCBS833VOT/


title: TNF_UM101_1


title: ChIP-seq from A549 (ENCLB482OXT)

description:
https://www.encodeproject.org/experiments/ENCSR606ZTC/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR606ZTC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR690JTW
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB482OXT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS509SVT at ENCODE; https://www.encodeproject.org/ENCBS509SVT/


title: TNF_SB203580_2

description: pretreated with 10 µM SB203580 for 1h, then 10 ng/ml TNF for 3h


title: TNF_DMSO_3

description: pretreated with 0.4% DMSO for 1h, then 10 ng/ml TNF for 3h


title: TNF_DMSO_2


title: ChIP-seq from A549 (ENCLB041YXT)

description:
https://www.encodeproject.org/experiments/ENCSR606ZTC/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR606ZTC
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR690JTW
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB041YXT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: Tim Reddy, Duke

value: ENCBS875FUH at ENCODE; https://www.encodeproject.org/ENCBS875FUH/


title: ChIP-seq from A549 (ENCLB585VAI)

description:
https://www.encodeproject.org/experiments/ENCSR600LQZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR600LQZ
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB585VAI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: ENCBS101CXZ at ENCODE; https://www.encodeproject.org/ENCBS101CXZ/


title: TNF_DMSO_1


title: TNF_SB203580_1


title: ChIP-seq from A549 (ENCLB283CWG)

description:
https://www.encodeproject.org/experiments/ENCSR610RKF/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR610RKF
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR730UDX
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB283CWG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS601MYW at ENCODE; https://www.encodeproject.org/ENCBS601MYW/


title: ChIP-seq from A549 (ENCLB865HPZ)

description:
https://www.encodeproject.org/experiments/ENCSR600LQZ/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR600LQZ
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB865HPZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS374ABX at ENCODE; https://www.encodeproject.org/ENCBS374ABX/


title: Control_3

description: untreated

value: HMVEC-L

value: lung microvascular endothelial cells


title: ChIP-seq from A549 (ENCLB858GAL)

description:
https://www.encodeproject.org/experiments/ENCSR600LQZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR600LQZ
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB858GAL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS954JBG at ENCODE; https://www.encodeproject.org/ENCBS954JBG/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Control_2

description: untreated


title: Control_1

description: untreated


title: ChIP-seq from A549 (ENCLB672PAI)

description:
https://www.encodeproject.org/experiments/ENCSR593RGY/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR593RGY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR491TAD
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB672PAI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS834ANM at ENCODE; https://www.encodeproject.org/ENCBS834ANM/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: DNase-seq from A549 (ENCLB630IXF)

description:
https://www.encodeproject.org/experiments/ENCSR599WJC/
***************
biological replicate number: 4
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR599WJC
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB630IXF

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: male

value: Tim Reddy, Duke

value: ENCBS213WGX at ENCODE; https://www.encodeproject.org/ENCBS213WGX/


title: ChIP-seq from A549 (ENCLB946XPA)

description:
https://www.encodeproject.org/experiments/ENCSR593DGU/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR593DGU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB946XPA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS640FKD at ENCODE; https://www.encodeproject.org/ENCBS640FKD/


title: ChIP-seq from A549 (ENCLB142ACE)

description:
https://www.encodeproject.org/experiments/ENCSR593DGU/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR593DGU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB142ACE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS964CQT at ENCODE; https://www.encodeproject.org/ENCBS964CQT/


title: Hi-C from A549 (ENCLB358EZR)

description:
https://www.encodeproject.org/experiments/ENCSR757IVO/
***************
biological replicate number: 1
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR757IVO
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB358EZR
size range: >200

value: ENCBS137IAE at ENCODE; https://www.encodeproject.org/ENCBS137IAE/


title: ChIP-seq from A549 (ENCLB579ZOL)

description:
https://www.encodeproject.org/experiments/ENCSR563GCV/
***************
biological replicate number: 3
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR563GCV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB579ZOL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS867ZRE at ENCODE; https://www.encodeproject.org/ENCBS867ZRE/


title: Hi-C from A549 (ENCLB406KFE)

description:
https://www.encodeproject.org/experiments/ENCSR757IVO/
***************
biological replicate number: 2
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR757IVO
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB406KFE
size range: >200

value: adult

value: ENCBS196MXU at ENCODE; https://www.encodeproject.org/ENCBS196MXU/


title: Hi-C from A549 (ENCLB625OVM)

description:
https://www.encodeproject.org/experiments/ENCSR757IVO/
***************
biological replicate number: 4
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR757IVO
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB625OVM
size range: >200

value: ENCBS076MNA at ENCODE; https://www.encodeproject.org/ENCBS076MNA/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: TNF_SB203580_3

value: HMVEC-L

value: lung microvascular endothelial cells


title: Hi-C from A549 (ENCLB489FWZ)

description:
https://www.encodeproject.org/experiments/ENCSR757IVO/
***************
biological replicate number: 1
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR757IVO
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB489FWZ
size range: >200

value: 58 year


title: ChIP-seq from A549 (ENCLB167FXQ)

description:
https://www.encodeproject.org/experiments/ENCSR563GCV/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR563GCV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB167FXQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS180JPF at ENCODE; https://www.encodeproject.org/ENCBS180JPF/


title: ChIP-seq from A549 (ENCLB033HNU)

description:
https://www.encodeproject.org/experiments/ENCSR569IBY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR569IBY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR317VER
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB033HNU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS600ZKV at ENCODE; https://www.encodeproject.org/ENCBS600ZKV/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: Hi-C from A549 (ENCLB873YOA)

description:
https://www.encodeproject.org/experiments/ENCSR757IVO/
***************
biological replicate number: 4
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR757IVO
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB873YOA
size range: >200

value: immortalized cell line

value: Tim Reddy, Duke


title: ChIP-seq from A549 (ENCLB502HGF)

description:
https://www.encodeproject.org/experiments/ENCSR563GCV/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR563GCV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR649JOE
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB502HGF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS974WHQ at ENCODE; https://www.encodeproject.org/ENCBS974WHQ/


title: Hi-C from A549 (ENCLB128KHX)

description:
https://www.encodeproject.org/experiments/ENCSR757IVO/
***************
biological replicate number: 2
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR757IVO
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB128KHX
size range: >200


title: ChIP-seq from A549 (ENCLB982BVC)

description:
https://www.encodeproject.org/experiments/ENCSR561ZRE/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR561ZRE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB982BVC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS083RUN at ENCODE; https://www.encodeproject.org/ENCBS083RUN/


title: ChIP-seq from A549 (ENCLB786KVH)

description:
https://www.encodeproject.org/experiments/ENCSR561ZRE/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR561ZRE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB786KVH
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS783DNA at ENCODE; https://www.encodeproject.org/ENCBS783DNA/


title: DNase-seq from A549 (ENCLB121WQM)

description:
https://www.encodeproject.org/experiments/ENCSR599WJC/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR599WJC
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB121WQM

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS307KAV at ENCODE; https://www.encodeproject.org/ENCBS307KAV/


title: ChIP-seq from A549 (ENCLB209MNI)

description:
https://www.encodeproject.org/experiments/ENCSR593RGY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR593RGY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR491TAD
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB209MNI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS868JZZ at ENCODE; https://www.encodeproject.org/ENCBS868JZZ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB909ITC)

description:
https://www.encodeproject.org/experiments/ENCSR561ZRE/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR561ZRE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB909ITC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS377KRQ at ENCODE; https://www.encodeproject.org/ENCBS377KRQ/


title: ChIP-seq from A549 (ENCLB097DBT)

description:
https://www.encodeproject.org/experiments/ENCSR555EAA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR555EAA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB097DBT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS687HVT at ENCODE; https://www.encodeproject.org/ENCBS687HVT/


title: Hi-C from A549 (ENCLB818UKI)

description:
https://www.encodeproject.org/experiments/ENCSR757IVO/
***************
biological replicate number: 3
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR757IVO
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB818UKI
size range: >200

value: immortalized cell line

value: ENCBS536GDK at ENCODE; https://www.encodeproject.org/ENCBS536GDK/


title: Hi-C from A549 (ENCLB904YTU)

description:
https://www.encodeproject.org/experiments/ENCSR662QKG/
***************
biological replicate number: 1
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR662QKG
assay title: Hi-C
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB904YTU
size range: >200

value: Tim Reddy, Duke

value: ENCBS631PPT at ENCODE; https://www.encodeproject.org/ENCBS631PPT/


title: Hi-C from A549 (ENCLB126ILD)

description:
https://www.encodeproject.org/experiments/ENCSR662QKG/
***************
biological replicate number: 4
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR662QKG
assay title: Hi-C
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB126ILD
size range: >200

value: ENCBS902DWK at ENCODE; https://www.encodeproject.org/ENCBS902DWK/


title: Hi-C from A549 (ENCLB050EON)

description:
https://www.encodeproject.org/experiments/ENCSR662QKG/
***************
biological replicate number: 4
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR662QKG
assay title: Hi-C
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB050EON
size range: >200

value: adult


title: ChIP-seq from A549 (ENCLB966DDS)

description:
https://www.encodeproject.org/experiments/ENCSR555EAA/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR555EAA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB966DDS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS466BWX at ENCODE; https://www.encodeproject.org/ENCBS466BWX/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: Hi-C from A549 (ENCLB931INQ)

description:
https://www.encodeproject.org/experiments/ENCSR757IVO/
***************
biological replicate number: 3
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR757IVO
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB931INQ
size range: >200


title: Hi-C from A549 (ENCLB571GEP)

description:
https://www.encodeproject.org/experiments/ENCSR662QKG/
***************
biological replicate number: 1
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR662QKG
assay title: Hi-C
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB571GEP
size range: >200


title: Hi-C from A549 (ENCLB153XCQ)

description:
https://www.encodeproject.org/experiments/ENCSR662QKG/
***************
biological replicate number: 3
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR662QKG
assay title: Hi-C
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB153XCQ
size range: >200

value: ENCBS989MQH at ENCODE; https://www.encodeproject.org/ENCBS989MQH/


title: ChIP-seq from A549 (ENCLB433OOQ)

description:
https://www.encodeproject.org/experiments/ENCSR555AYD/
***************
biological replicate number: 2
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR555AYD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR909GTY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB433OOQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS601TIS at ENCODE; https://www.encodeproject.org/ENCBS601TIS/


title: ChIP-seq from A549 (ENCLB280FVE)

description:
https://www.encodeproject.org/experiments/ENCSR555AYD/
***************
biological replicate number: 3
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR555AYD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR909GTY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB280FVE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS439IVX at ENCODE; https://www.encodeproject.org/ENCBS439IVX/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB309WZG)

description:
https://www.encodeproject.org/experiments/ENCSR549SVK/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR549SVK
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB309WZG
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 12 hours

value: Control

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: 58 year

value: ENCBS273XQH at ENCODE; https://www.encodeproject.org/ENCBS273XQH/


title: Hi-C from A549 (ENCLB998FJI)

description:
https://www.encodeproject.org/experiments/ENCSR662QKG/
***************
biological replicate number: 2
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR662QKG
assay title: Hi-C
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB998FJI
size range: >200

value: immortalized cell line

value: male

value: ENCBS876WBK at ENCODE; https://www.encodeproject.org/ENCBS876WBK/


title: ChIP-seq from A549 (ENCLB702KNK)

description:
https://www.encodeproject.org/experiments/ENCSR549SVK/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR549SVK
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB702KNK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: ENCBS633FJA at ENCODE; https://www.encodeproject.org/ENCBS633FJA/


title: ChIP-seq from A549 (ENCLB649SPN)

description:
https://www.encodeproject.org/experiments/ENCSR548SPY/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR548SPY
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB649SPN
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS788QQI at ENCODE; https://www.encodeproject.org/ENCBS788QQI/


title: ChIP-seq from A549 (ENCLB036QLS)

description:
https://www.encodeproject.org/experiments/ENCSR548SPY/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR548SPY
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB036QLS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS950YDL at ENCODE; https://www.encodeproject.org/ENCBS950YDL/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: Hi-C from A549 (ENCLB591SFK)

description:
https://www.encodeproject.org/experiments/ENCSR499RVD/
***************
biological replicate number: 2
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR499RVD
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB591SFK
size range: >200

value: ENCBS363RMQ at ENCODE; https://www.encodeproject.org/ENCBS363RMQ/


title: Hi-C from A549 (ENCLB195PDF)

description:
https://www.encodeproject.org/experiments/ENCSR499RVD/
***************
biological replicate number: 3
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR499RVD
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB195PDF
size range: >200

value: ENCBS453DQV at ENCODE; https://www.encodeproject.org/ENCBS453DQV/


title: Hi-C from A549 (ENCLB310TDE)

description:
https://www.encodeproject.org/experiments/ENCSR499RVD/
***************
biological replicate number: 3
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR499RVD
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB310TDE
size range: >200

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB584HHW)

description:
https://www.encodeproject.org/experiments/ENCSR544GUO/
***************
biological replicate number: 3
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR544GUO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB584HHW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS468UQT at ENCODE; https://www.encodeproject.org/ENCBS468UQT/