title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zc3h8 knockdown (T1525), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GGCCTATA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zbtb43 knockdown (T1526), replicate 2

status: Public on Feb 02 2017

type: SRA

city: Toronto

first: Ulrich

last: Braunschweig

state: Ontario

address: 160 College Street

department: Donnelly Centre

country: Canada

institute: University of Toronto

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CAAGGTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab

library_source: transcriptomic

data_processing:
CASAVA 1.8 was used for base calling.
Fastq files contain demultiplexed reads which were assigned to the appropriate treatment by matching to expected forward and reverse barcodes (sequenced in dedicated reads; not supplied).
Forward and reverse event reads were mapped to custom junction libraries representing all expected splice variants (supplied as processed files), using bowtie with settings --best -v 3 -k 1 --trim3 26 --trim5 20. Trimming was done to remove lower-quality, uninformative ends and because forward reads had a missing base call at position 11 due to a power outage. Junction libraries were first constructed from NCBIm37/mm9 gene annotations, and then refined based on the results of de novo mapping of the reads from one full Illumina lane from each cell line using tophat (default settings with -i 40 and providing Ensembl transcript annotations for NCBIm37), after quality trimming (minimum MAPQ of 33) from the 3'-end with the fastx toolkit. Mapped reads were counted per junction.
Alternative splicing analysis: Percent-spliced-in (PSI) values were calculated for each alternative exon, or part thereof in the case of alternative 5'-/3'-splice sites ('event'), from read tallies as follows: PSI was calculated independently from forward and reverse reads as the percentage of reads supporting inclusion divided by the total number of reads for the event. For alternative 5'/3'-ss events that were part of an alternative exon (Foxm1.A2, Mta1.A1, Uspl1.A3), the PSI was instead calculated with reference to the total reads supporting inclusion of that exon in order to assess independent regulation of alternative splice site usage. Only the read direction in which all reads unambiguously supported either inclusion or exclusion of an event was used, and the average if that applied for both. Exploratory analysis revealed that PSI values showed low-level batch effects per 96-well plate which we moderated by subtracting a weighted plate median in which negative controls (siNT and mock treatment) were given 20x more weight than other samples. To derive variances, and because PSI values are not nearly normally distributed but roughly follow a beta distribution, we elected to fit a beta distribution to each pair of replicate treatments, as well as to all negative controls from both replicates, using maximum-likelihood fitting as implemented in the fitdistr() function from the R package MASS {Venables & Ripley, Modern Applied Statistics with S (2002)}. Iterative optimization of shape parameters was initiated with settings x=PSI, shape1=1, shape2=1, method=”L-BFGS-B”, lower=0.01, and upper=mean number of reads supporting each PSI value. A modified Strictly Standardized Mean Difference (SSMD {Zhang, Genomics (2007)}) was then calculated based on the formula: SSMD = (μt – μc)/SQRT(vart + varc) where μt and μc are the means (corresponding to the PSI), and vart and varc the variances of the beta distributions fitted to the treatment replicates and negative controls, respectively. Events for which not all reads from at least one direction were informative (Mff.A2, Tead1.A2) were excluded from further analysis, as were events in individual treatments with less than 20 reads in one or both replicates (~9% of all event x treatment combinations). Additionally, the following events were removed from further splicing analysis: expression only events or constitutive exons, Fgf4, Gapdh, Srpk2, Srrm4; events with consistently low read counts: Atg13.A1, H2afy.A2, Tcf7l1 (N2A only), Dnmt3b (N2A only); or because measured inclusion was biased by differential length of isoforms:, Fgfr1, Sall4.
Expression analysis: Read counts from all splice variants of each gene were used to estimate relative mRNA expression levels, reads per million reads (RPMs). Differential expression analysis based on raw read counts was performed using the generalized linear models workflow from the R package edgeR. Plate, position (edge/interior) and treatment were used as design factors (where all treatments of each type of control were treated as replicates.) Models fitted using estimateDisp() to estimate the common, trended, and tag-wise dispersion for the CGR8 and N2A data separately. Subsequently, differences attributable to treatment, plate, or position contrasts were extracted with glmLRT() and represented as log2-fold changes with associated FDR. Fold-changes for treatments are relative to the siNT and mock-treatment controls.
Genome_build: NCBIm37/mm9
Supplementary_files_format_and_content: Processed files are either tab-delimited  tables (.tab) or FASTA files (.fa). KnockdownAnnotation.tab contains treatment annotations and well/plate positions. ScreenJuncUp.20-77.tab and ScreenJuncDn.20-77.tab contain the custom junction upstream and downstram junction libraries, respectively, and ScreenEvent_junctions.tab contains the information which junctions were used to calculate PSI for each event. PSI.SSMD.CGR8.tab and PSI.SSMD.N2A.tab contain raw PSI of each replicate and final SSMD. Reads_perEvent_CGR8.tab and Reads_perEvent_N2A.tab contain raw read counts on which expression analyis was based, and Expression.CGR8.treatments.tab and Expression.N2A.treatments.tab contain modeled relative abundance and fold-change with associated FDR for each treatment type.

molecule: total RNA

organism: Mus musculus

source_name: Embryonic stem cells

growth_protocol: CGR8 mouse embryonic stem cells (ESCs) were cultured as described previously on gelatin-coated plates (Gabut et al., Cell (2011), Han  et al., Nature (2013)). Mouse neuroblastoma (N2A) cells were grown in DMEM supplemented with 10% FBS, sodium pyruvate, MEM non-essential amino acids, and penicillin/streptomycin. All cell lines were maintained at 37°C with 5% CO2.

extract_protocol:
Forty-eight hours post-transfection, total RNA were purified from cultured cells using RNeasy Plus 96 Kit (Qiagen), as per the manufacturer’s instructions.
For each sample, a multiplex RT-PCR assay was first applied to simultaneously amplify 50 AS and/or expression events in a single reaction. The multiplex RT-PCR reaction was carried out in 96-well plates using the OneStep RT-PCR kit (Qiagen) as recommended by the manufacturer, with the following changes: reactions were performed in a volume of 20 uL with 2 uL of the purified total RNA as input, and a mixture of 50 pairs of primers was added to each reaction with a final concentration of 0.25 uM for each individual forward and reverse primer. Four identical Veriti 96-well Thermal Cyclers (Applied Biosystems) were used with the following conditions: 50°C for 30 minutes, 95°C for 15 minute, 30 cycles of 94°C for 40 seconds, 58°C for 1 minute (slow ramp rate), 72°C for 3 minutes, and a final extension step at 72°C for 10 minutes. Two sets of barcodes were incorporated into forward and reverse primers, respectively, after the universal adaptors and added to the amplicons in the second PCR reaction to allow demultiplexing all reads that were derived from a particular treatment. Primers sequences were: forward primer, AATGATACGGCGACCACCGAGATCTACACNNNNNNNNACACTCTTTCCCTACACGACGCTCTTCCGATCT (N denotes i5 barcode); reverse primer, CAAGCAGAAGACGGCATACGAGATNNNNNNNNGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT (N denotes i7 primer). The second PCR was performed using Phusion High-Fidelity DNA Polymerase (Thermo Scientific), as per the manufacturer’s instructions. For each 20 uL of reaction, 1 uL of the multiplex RT-PCR reaction products was used as templates. The thermal cycling conditions were as follows: 98°C for 30 seconds, 15 cycles of 98°C for 10 seconds, 65°C for 30 seconds, 72°C for 30 seconds, and a final extension step at 72°C for 5 minutes. The resulting libraries were pooled and sequenced.

treatment_protocol: Twenty-four hours prior to transfection, CGR8 and N2A cells were seeded in 96-well plates, 3000 and 5000 cells per well, respectively. Cells were transfected with the SMARTpool siRNAs at 50 nM final concentration using DharmaFECT1 reagent (Dharmacon), as recommended by the manufacturer.

tag: cell line


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1524), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: ACGATGGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1522), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GGAATAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1523), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: TCACTGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbmxl2 knockdown (T1521), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: AGACCTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zscan21 knockdown (T1520), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CATCCAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, mock (T1536), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: TGGAAGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp628 knockdown (T1517), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: TATAGGCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp282 knockdown (T1516), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GAGTTGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp326 knockdown (T1518), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CTCTGAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zc3h3 knockdown (T1519), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GCTATTCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1534), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: ATCCATCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp236 knockdown (T1513), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GTACCATG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ythdf3 knockdown (T1514), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CGTTATGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1510), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: ACCAGTTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1511), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CTTGCATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1512), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CGAAGGAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm44 knockdown (T1509), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: AGACTCTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ube2a knockdown (T1532), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: TCCACTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Parp12 knockdown (T1506), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GTGATCTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp451 knockdown (T1504), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CTGTAGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp9 knockdown (T1503), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CGTTCCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp57 knockdown (T1502), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CCATGCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Unk knockdown (T1501), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: AATTGCGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1500), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: AGTGCTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siMbnl (T1497), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: ATCCGGAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Wbp4 knockdown (T1505), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GAACAGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp263 knockdown (T1515), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GCATCGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Cxcl12 knockdown (T1494), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GAGAACAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zzz3 knockdown (T1493), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: TGTGAGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp180 knockdown (T1495), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GTACACCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp68 knockdown (T1492), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: TTGCGGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zc3hav1 knockdown (T1491), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: AGCAGAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp36 knockdown (T1490), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: AACCGCTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1488), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TCTGAGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp36l2 knockdown (T1489), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: GATGCTTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1487), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GTCTACTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Xab2 knockdown (T1507), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: TGTCGTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1486), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: CTTGGATG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1499), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: CAAGTCCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1498), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: TACGAAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp277 knockdown (T1483), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TTCCGGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp62 knockdown (T1484), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: CAACTGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siNT (T1485), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: CTCAGTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp955a knockdown (T1481), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GTTCCTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp316 knockdown (T1482), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GAAGTCCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp90 knockdown (T1496), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: TCACGACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1475), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GCGCTAAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1476), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GGATCGTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Nova1 knockdown (T1473), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: AGCACAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1474), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: ATGCTAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp13 knockdown (T1477), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TTGGTTGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfr knockdown (T1471), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GACATCTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp260 knockdown (T1480), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TGTCTGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp239 knockdown (T1468), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: ACAGGTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp317 knockdown (T1469), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GAGTAGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, mock (T1467), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TCGACTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Wtap knockdown (T1466), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TCACACAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1464), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TACCTTCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1463), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: CAGTGACT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siMbnl (T1479), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TGACCTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1462), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TCGTGAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp207 knockdown (T1478), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GTGACAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Mex3a knockdown (T1461), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: CTACACGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp467 knockdown (T1459), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TTCGATCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zrsr2 knockdown (T1460), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GATGTGGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp385a knockdown (T1456), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: CCTATTCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sf1 knockdown (T1457), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GACACTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp330 knockdown (T1458), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GCTTGGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, U2af2 knockdown (T1472), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: ATCGCGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zc3h7a knockdown (T1455), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: CCAACGAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ythdf1 knockdown (T1454), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GGTAGGAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp1 knockdown (T1453), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TGGAACGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1451), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GAGTTCAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1452), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TGCAGATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zmym1 knockdown (T1449), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: AGGACTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp358 knockdown (T1508), replicate 2

description:
Forward (i5) barcode: TGATACAT, reverse (i7) barcode: AGACAGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zbtb22 knockdown (T1448), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: ACCTCTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ybx2 knockdown (T1447), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TATTCGCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp35 knockdown (T1446), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: CCAAGCTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zkscan3 knockdown (T1445), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: ACGAAGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zcchc8 knockdown (T1470), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: CATGCTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp319 knockdown (T1444), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GGAATACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ythdf2 knockdown (T1465), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TCAGCAGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, mock (T1440), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: ATATCGGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Stag1 knockdown (T1439), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TATACCGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siNT (T1441), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: AGCTTGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp59 knockdown (T1442), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TGGTCATG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, U2af1l4 knockdown (T1437), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GCTATAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tnrc6a knockdown (T1438), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TGTGCTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrpe knockdown (T1435), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CACTTCTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Alyref knockdown (T1436), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CCATGCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, untreated (T1450), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: GTGTGTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Thap1 knockdown (T1433), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: ATTAGCCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Thoc3 knockdown (T1434), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: AGGTAGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Stag3 knockdown (T1430), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: AACCAAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tnks knockdown (T1429), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: ACTGAGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrpg knockdown (T1426), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: ATCGCCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Srsf9 knockdown (T1425), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CAACCAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sugp2 knockdown (T1424), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TCAGGTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sox11 knockdown (T1423), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CGGCTTAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Zfp46 knockdown (T1443), replicate 2

description:
Forward (i5) barcode: TATGGAGG, reverse (i7) barcode: TTAAGCGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sugp1 knockdown (T1427), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GAACGTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tmpo knockdown (T1428), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: ACTGGACT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Smc2 knockdown (T1417), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TCCTTGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Scand1 knockdown (T1416), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CCTAATCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Smc6 knockdown (T1422), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TCTCCACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rad54l2 knockdown (T1418), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GCTAGCTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrpa knockdown (T1419), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CCGCAATA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Srrm1 knockdown (T1421), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TTCGATGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sp6 knockdown (T1415), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CAGTTGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Taf9 knockdown (T1413), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GTACTGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Shprh knockdown (T1411), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GCTTCGTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Kdm6a knockdown (T1410), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GGAACGAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Nhp2l1 knockdown (T1414), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: AAGCGGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Srsf1 knockdown (T1409), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CGTTGCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Supt16h knockdown (T1408), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: AGTCGTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Stag2 knockdown (T1432), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: AACGTTGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rsph1 knockdown (T1407), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GTCTTCAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Vmn1r11 knockdown (T1405), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CGAAGGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tra2b knockdown (T1403), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TCTCTCAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Txnl4a knockdown (T1406), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CTCTAGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tipin knockdown (T1431), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: CTGTCAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Usp39 knockdown (T1404), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TTGCTTGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siMbnl (T1401), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: ACGATCGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Cenpk knockdown (T1400), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TGACTGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Stau1 knockdown (T1392), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: TCCAGAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrpa1 knockdown (T1393), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GTTGTCGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrpd1 knockdown (T1394), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: AGAGACTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sept8 knockdown (T1397), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TTCGCGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snapc4 knockdown (T1402), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GACTAGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ssb knockdown (T1399), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TGGAGATG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Adad1 knockdown (T1395), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TTCCTACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, U2af1 knockdown (T1412), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: TCCTGTTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrpb knockdown (T1391), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CTACCATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sgol1 knockdown (T1398), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: ACCAGAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siNT (T1389), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CAGTCTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sf3a2 knockdown (T1390), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GGAAGGTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Clasrp knockdown (T1386), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CGTACGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sin3b knockdown (T1387), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CACAGAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sf3b1 knockdown (T1382), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GAGTCAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ttc14 knockdown (T1384), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GTCTTGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siMbnl (T1383), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: ATGGAAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrnp70 knockdown (T1388), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GTAGTGGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Smc5 knockdown (T1380), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GCAACGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sf3b4 knockdown (T1385), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: ACTGGTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Spag5 knockdown (T1381), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CGAAGCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Srsf6 knockdown (T1420), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: GTTGCTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sirt3 knockdown (T1378), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: ATGCATCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Srsf4 knockdown (T1377), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: AGTCTGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tspyl1 knockdown (T1375), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: TAGCTAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sox13 knockdown (T1396), replicate 2

description:
Forward (i5) barcode: GCTGATCG, reverse (i7) barcode: AGGAGTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Srsf12 knockdown (T1376), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CTGATGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Smu1 knockdown (T1374), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: TCGTACCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Thap7 knockdown (T1372), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CGATATCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Stau2 knockdown (T1369), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CCGGAATT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sept6 knockdown (T1370), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CATGCATG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tdrd3 knockdown (T1365), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: TGCTACGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Celf3 knockdown (T1366), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GTAGGAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Eftud2 knockdown (T1368), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GTCTGTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Stra13 knockdown (T1364), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GCTTGCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrpb2 knockdown (T1367), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: ACAGGACA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Strap knockdown (T1361), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CCATTACC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Dynlt3 knockdown (T1362), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CTTGACGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Thumpd1 knockdown (T1360), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: TGACGTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Thap4 knockdown (T1379), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: AAGCGCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Smyd5 knockdown (T1357), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CATGTGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sycp3 knockdown (T1358), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GATCAGGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Slc11a1 knockdown (T1354), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: AAGGTTCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrpc knockdown (T1353), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: ACCTTCCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Strbp knockdown (T1355), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: ATCCTAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snw1 knockdown (T1352), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: ACAGAGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tdrd6 knockdown (T1356), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GACAAGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sirt6 knockdown (T1373), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GAGAGTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sirt7 knockdown (T1350), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CTGACAGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Snrpd3 knockdown (T1349), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: AGCAGTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Taf8 knockdown (T1351), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: TCTGTGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, mock (T1371), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: TGACAGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Smc1a knockdown (T1348), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GTACTCCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tfip11 knockdown (T1347), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: ACACACAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sf3b2 knockdown (T1363), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: AGGTGATG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Tdrd1 knockdown (T1346), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: CAACTGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Srsf5 knockdown (T1359), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: GGAATTGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm4 knockdown (T1343), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CTCAAGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sec13 knockdown (T1342), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TTGGAACC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Orc3 knockdown (T1339), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GTACCTAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Phf5a knockdown (T1340), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: ATCCATGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, mock (T1344), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: AGGTACCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Orc4 knockdown (T1338), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TCAGCTGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm17 knockdown (T1337), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CTAGGTTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Orc2 knockdown (T1336), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: AGGATCGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Polr2h knockdown (T1335), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: AAGGATGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Polr2k knockdown (T1333), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CGTTCCTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rp9 knockdown (T1332), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CAGAGTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siNT (T1345), replicate 2

description:
Forward (i5) barcode: GAGTCAGT, reverse (i7) barcode: AGGACAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Poldip3 knockdown (T1323), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: ATTACCGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm7 knockdown (T1324), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CCTTAACC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pogk knockdown (T1327), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: ACCTTCGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Mex3d knockdown (T1331), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CCGGATTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Repin1 knockdown (T1328), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TCGATGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rcor2 knockdown (T1329), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TGAGACAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rps13 knockdown (T1330), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TAGCATCG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pole3 knockdown (T1325), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CGCGTATA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rdm1 knockdown (T1318), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TGCTTCCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ptbp2 knockdown (T1321), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TGTCCTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Prr3 knockdown (T1322), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CGGCATAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Phf15 knockdown (T1326), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GTCTCTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pole4 knockdown (T1320), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GAACAGCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ppie knockdown (T1317), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: ACACCAGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Phf8 knockdown (T1334), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GTGTTCAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbmx knockdown (T1319), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TACGCGTA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pold2 knockdown (T1310), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TAGCGCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pspc1 knockdown (T1309), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GCTATACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Papola knockdown (T1308), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GCAACGTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ptcd1 knockdown (T1311), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: AGAGTGTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbmxl1 knockdown (T1316), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CTCTTGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Scaf8 knockdown (T1313), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: ATGCTACG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm10 knockdown (T1315), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GATGCATC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sfmbt2 knockdown (T1312), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GAGTAGAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rpa1 knockdown (T1314), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GGCCTAAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rps26 knockdown (T1307), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: AGGAGAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Polr1b knockdown (T1306), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TGCAGTTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pole2 knockdown (T1304), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CGATAAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pdcd7 knockdown (T1303), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CCAATAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Psip1 knockdown (T1302), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: TGAGCACT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pmf1 knockdown (T1297), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CGTAGCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pola2 knockdown (T1301), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CTTCAGCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rrs1 knockdown (T1300), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: AACGCCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Mex3b knockdown (T1298), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GTGACTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rragc knockdown (T1299), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: CTTGCTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Orc1 knockdown (T1295), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CAAGGAAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rnf2 knockdown (T1291), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CAAGACGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siNT (T1293), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: ACGTCTTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Satb1 knockdown (T1292), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GTGTGAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Phf17 knockdown (T1290), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CTTGAGGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rnf41 knockdown (T1294), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CCAATTCC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Scrt1 knockdown (T1289), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: AACGGCTT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm8a knockdown (T1288), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GTTGGTTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siMbnl (T1305), replicate 2

description:
Forward (i5) barcode: CTGCTTCG, reverse (i7) barcode: GCTTCGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, siMbnl (T1287), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: AGTGCAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pdcd11 knockdown (T1296), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: TTGCCGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rnf138 knockdown (T1284), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CTTCGAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rcor3 knockdown (T1285), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GAGACTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rnps1 knockdown (T1277), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: AGGTCAAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Polr2j knockdown (T1283), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GACTTCAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbpms knockdown (T1280), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: TACCTAGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm28 knockdown (T1286), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: AGAGGTCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Polr2c knockdown (T1278), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CAGACAGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Raly knockdown (T1282), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CCATAAGC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ppih knockdown (T1281), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GATGCTAC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Prpf39 knockdown (T1279), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: ACACCTCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rdbp knockdown (T1276), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CGTTCGAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm14 knockdown (T1271), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: AAGGAACC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ppil2 knockdown (T1270), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GGTTGCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pum2 knockdown (T1274), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GCTACCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rufy2 knockdown (T1269), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CGAACCAT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, mock (T1275), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: TCGTTCCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm38 knockdown (T1267), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: TAATCCGG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Pum1 knockdown (T1272), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GGCGTATT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rpp25 knockdown (T1273), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CTGTTCTG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Orc5 knockdown (T1265), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: TGCAACCA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Prpf19 knockdown (T1268), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GTAGTGCT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Purb knockdown (T1264), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: CTGTCTGT
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Rbm18 knockdown (T1263), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GTCAAGAG
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ppil4 knockdown (T1262), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: ACTCTGTC
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Sart3 knockdown (T1261), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: TACCGCAA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab


title: SPAR-Seq of multi-exon regions of 50 genes in CGR8, Ppil3 knockdown (T1259), replicate 2

description:
Forward (i5) barcode: CCTATTGA, reverse (i7) barcode: GTTCACGA
KnockdownAnnotation.tab
ScreenJuncUp.20-77.fa
ScreenJuncDn.20-77.fa
ScreenEvents_junctions.tab
PSI.SSMD.CGR8.tab
Reads_perEvent_CGR8.tab
Expression.CGR8.treatments.tab