title: ChIP-seq from heart (ENCLB598NHG)

description:
https://www.encodeproject.org/experiments/ENCSR437NPG/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR437NPG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR424WHM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB598NHG
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (15.5 days)

value: heart

value: Heart from 78 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS595EMK at ENCODE; https://www.encodeproject.org/ENCBS595EMK/


title: ChIP-seq from limb (ENCLB738FSY)

status: Public on Jun 22 2016

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR949ZLW/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR949ZLW
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB738FSY
size range: 300-500

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Mus musculus

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (11.5 days)

tag: antibody

value: Control

value: limb

value: tissue

tag: description

value: Limb from 109 embyronic 11.5 day mice

tag: biosample encode accession

tag: age

tag: dev stage

value: embryonic

tag: Sex

value: pooled male and female

tag: health state

value: healthy

tag: lab

tag: link

value: ENCBS066IEL at ENCODE; https://www.encodeproject.org/ENCBS066IEL/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB376YCQ)

description:
https://www.encodeproject.org/experiments/ENCSR437SFX/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse forebrain
experiment encode accession: ENCSR437SFX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR880HDV
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB376YCQ
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (15.5 days)

value: forebrain

value: Forebrain from 62 embryonic 15.5 day mice

value: ENCBS841GER at ENCODE; https://www.encodeproject.org/ENCBS841GER/


title: ChIP-seq from heart (ENCLB936LHT)

description:
https://www.encodeproject.org/experiments/ENCSR437NPG/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR437NPG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR424WHM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB936LHT
size range: 300-500

value: Heart from 62 embryonic 15.5 day mice

value: ENCBS909LOF at ENCODE; https://www.encodeproject.org/ENCBS909LOF/


title: ChIP-seq from intestine (ENCLB824MGT)

description:
https://www.encodeproject.org/experiments/ENCSR946RLM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR946RLM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB824MGT
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)

value: intestine

value: Intestine from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS044AAA at ENCODE; https://www.encodeproject.org/ENCBS044AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from kidney (ENCLB852DAN)

description:
https://www.encodeproject.org/experiments/ENCSR455UTX/
***************
biological replicate number: 2
technical replicate number: 3,1,2
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse kidney
experiment encode accession: ENCSR455UTX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR780JSE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB852DAN
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (15.5 days)

value: kidney

value: tissue

value: Kidney from 62 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS924ZKF at ENCODE; https://www.encodeproject.org/ENCBS924ZKF/


title: ChIP-seq from midbrain (ENCLB097XEN)

description:
https://www.encodeproject.org/experiments/ENCSR948VPV/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR948VPV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR413VHH
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB097XEN
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex embryo (14.5 days)

value: midbrain

value: Midbrain from 24 embryonic 14.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: ENCBS003AAA at ENCODE; https://www.encodeproject.org/ENCBS003AAA/


title: WGBS from embryonic facial prominence (ENCLB311WUF)

description:
https://www.encodeproject.org/experiments/ENCSR950OMB/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse facial prominence
experiment encode accession: ENCSR950OMB
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB311WUF
size range: 180-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (11.5 days)

extract_protocol:
general protocol: https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png
general protocol: https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png
extraction method: Qiagen DNeasy Blood and Tissue Kit
general protocol: https://www.encodeproject.org/documents/9d5f346e-88d3-45e2-b28a-2b26f537490f/@@download/attachment/Ecker_Methyl_protocol_v030114.pdf

value: embryonic facial prominence

value: Craniofacial prominence from 109 embyronic 11.5 day mice

value: ENCBS141GPQ at ENCODE; https://www.encodeproject.org/ENCBS141GPQ/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB836KGJ)

description:
https://www.encodeproject.org/experiments/ENCSR944XPB/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR944XPB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR024JAN
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB836KGJ
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (11.5 days)

value: forebrain

value: Forebrain from 88 embyronic 11.5 day mice

value: ENCBS720JOH at ENCODE; https://www.encodeproject.org/ENCBS720JOH/


title: WGBS from embryonic facial prominence (ENCLB394JYT)

description:
https://www.encodeproject.org/experiments/ENCSR950OMB/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse facial prominence
experiment encode accession: ENCSR950OMB
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB394JYT
size range: 180-500

value: tissue

value: Craniofacial prominence from 88 embyronic 11.5 day mice

value: ENCBS468NAL at ENCODE; https://www.encodeproject.org/ENCBS468NAL/


title: ChIP-seq from limb (ENCLB503JGL)

description:
https://www.encodeproject.org/experiments/ENCSR949ZLW/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR949ZLW
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB503JGL
size range: 300-500

value: Control

value: limb

value: Limb from 88 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS681XPR at ENCODE; https://www.encodeproject.org/ENCBS681XPR/


title: ChIP-seq from liver (ENCLB028RCQ)

description:
https://www.encodeproject.org/experiments/ENCSR932BNP/
***************
biological replicate number: 2
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR932BNP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB028RCQ
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (11.5 days)

value: liver

value: Liver from pooled embryonic 11.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: ENCBS522YOW at ENCODE; https://www.encodeproject.org/ENCBS522YOW/


title: ChIP-seq from kidney (ENCLB495HKV)

description:
https://www.encodeproject.org/experiments/ENCSR436FYE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 15.5 day mouse kidney
experiment encode accession: ENCSR436FYE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR780JSE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB495HKV
size range: 300-500

value: kidney

value: Kidney from 62 embryonic 15.5 day mice

value: ENCBS924ZKF at ENCODE; https://www.encodeproject.org/ENCBS924ZKF/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from intestine (ENCLB503XEX)

description:
https://www.encodeproject.org/experiments/ENCSR946RLM/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR946RLM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB503XEX
size range: 300-500

value: intestine

value: tissue

value: Intestine from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS560AAA at ENCODE; https://www.encodeproject.org/ENCBS560AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from stomach (ENCLB885KBW)

description:
https://www.encodeproject.org/experiments/ENCSR946JEA/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 16.5 day mouse stomach
experiment encode accession: ENCSR946JEA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR012BVY
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB885KBW
size range: 300-500

source_name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (16.5 days)

value: stomach

value: Stomach pooled from embyonic 16.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS243DCE at ENCODE; https://www.encodeproject.org/ENCBS243DCE/


title: ChIP-seq from hindbrain (ENCLB851GSA)

description:
https://www.encodeproject.org/experiments/ENCSR928CYU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR928CYU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB851GSA
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days)

value: hindbrain

value: Hindbrain from 88 embyronic 11.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: ENCBS976DPO at ENCODE; https://www.encodeproject.org/ENCBS976DPO/


title: WGBS from limb (ENCLB133VWC)

description:
https://www.encodeproject.org/experiments/ENCSR916GKL/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR916GKL
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB133VWC
size range: 180-500

value: limb

value: Limb from 109 embyronic 11.5 day mice

value: ENCBS066IEL at ENCODE; https://www.encodeproject.org/ENCBS066IEL/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from limb (ENCLB134UXB)

description:
https://www.encodeproject.org/experiments/ENCSR916GKL/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR916GKL
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB134UXB
size range: 180-500

value: tissue

value: Limb from 88 embyronic 11.5 day mice

value: ENCBS681XPR at ENCODE; https://www.encodeproject.org/ENCBS681XPR/


title: WGBS from limb (ENCLB749VMQ)

description:
https://www.encodeproject.org/experiments/ENCSR916GKL/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR916GKL
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB749VMQ
size range: 180-500


title: ChIP-seq from midbrain (ENCLB257KRY)

description:
https://www.encodeproject.org/experiments/ENCSR948VPV/
***************
biological replicate number: 2
technical replicate number: 1,2,3
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR948VPV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR413VHH
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB257KRY
size range: 300-500

value: midbrain

value: Midbrain from 34 embryonic 14.5 day mice

value: ENCBS015AAA at ENCODE; https://www.encodeproject.org/ENCBS015AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from intestine (ENCLB078DKW)

description:
https://www.encodeproject.org/experiments/ENCSR919DDC/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR919DDC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR872UEE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB078DKW
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (15.5 days)

value: intestine

value: Intestine from 78 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS401LLS at ENCODE; https://www.encodeproject.org/ENCBS401LLS/


title: ChIP-seq from forebrain (ENCLB575SIW)

description:
https://www.encodeproject.org/experiments/ENCSR944XPB/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR944XPB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR024JAN
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB575SIW
size range: 300-500

value: forebrain

value: Forebrain from 109 embyronic 11.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: ENCBS745VOM at ENCODE; https://www.encodeproject.org/ENCBS745VOM/


title: ChIP-seq from kidney (ENCLB614XGM)

description:
https://www.encodeproject.org/experiments/ENCSR436FYE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 15.5 day mouse kidney
experiment encode accession: ENCSR436FYE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR780JSE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB614XGM
size range: 300-500

value: kidney

value: tissue

value: Kidney from 78 embryonic 15.5 day mice

value: ENCBS899UOK at ENCODE; https://www.encodeproject.org/ENCBS899UOK/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from liver (ENCLB422VMI)

description:
https://www.encodeproject.org/experiments/ENCSR932BNP/
***************
biological replicate number: 1
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse liver
experiment encode accession: ENCSR932BNP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR573MJR
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB422VMI
size range: 300-500

value: liver

value: Liver from 109 embyronic 11.5 day mice

value: ENCBS746POP at ENCODE; https://www.encodeproject.org/ENCBS746POP/


title: ChIP-seq from lung (ENCLB340DQQ)

description:
https://www.encodeproject.org/experiments/ENCSR430JWT/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR430JWT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB340DQQ
size range: 300-500

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (16.5 days)

value: lung

value: Lung from 41 embyonic 16.5 day mice

value: ENCBS833ZFI at ENCODE; https://www.encodeproject.org/ENCBS833ZFI/


title: ChIP-seq from liver (ENCLB096LJO)

description:
https://www.encodeproject.org/experiments/ENCSR433ESG/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR433ESG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742WLX
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB096LJO
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap liver tissue mixed sex embryo (14.5 days)

value: Liver from embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS194VTP at ENCODE; https://www.encodeproject.org/ENCBS194VTP/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from kidney (ENCLB280EIC)

description:
https://www.encodeproject.org/experiments/ENCSR912IXU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR912IXU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB280EIC
size range: 300-500

source_name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (16.5 days)

value: Kidney pooled from embyonic 16.5 day mice

value: embryonic

value: pooled male and female

value: healthy

value: ENCBS519MUD at ENCODE; https://www.encodeproject.org/ENCBS519MUD/


title: ChIP-seq from liver (ENCLB675OUG)

description:
https://www.encodeproject.org/experiments/ENCSR433ESG/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR433ESG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742WLX
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB675OUG
size range: 300-500

value: tissue

value: ENCBS096GAJ at ENCODE; https://www.encodeproject.org/ENCBS096GAJ/


title: ChIP-seq from kidney (ENCLB714VFS)

description:
https://www.encodeproject.org/experiments/ENCSR912IXU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR912IXU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB714VFS
size range: 300-500

value: kidney

value: Kidney from 41 embyonic 16.5 day mice

value: ENCBS529OHA at ENCODE; https://www.encodeproject.org/ENCBS529OHA/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from hindbrain (ENCLB549DHM)

description:
https://www.encodeproject.org/experiments/ENCSR928CYU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR928CYU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB549DHM
size range: 300-500

value: hindbrain

value: Hindbrain from 109 embyronic 11.5 day mice

value: ENCBS199NDR at ENCODE; https://www.encodeproject.org/ENCBS199NDR/


title: ChIP-seq from lung (ENCLB124KWM)

description:
https://www.encodeproject.org/experiments/ENCSR430JWT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR430JWT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB124KWM
size range: 300-500

value: lung

value: Lung pooled from embyonic 16.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS377RBN at ENCODE; https://www.encodeproject.org/ENCBS377RBN/


title: ChIP-seq from midbrain (ENCLB031RJL)

description:
https://www.encodeproject.org/experiments/ENCSR428GHF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 15.5 day mouse midbrain
experiment encode accession: ENCSR428GHF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR748XBE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB031RJL
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (15.5 days)

value: midbrain

value: Midbrain from 78 embryonic 15.5 day mice

value: embryonic

value: ENCBS190ETJ at ENCODE; https://www.encodeproject.org/ENCBS190ETJ/


title: WGBS from limb (ENCLB866HSI)

description:
https://www.encodeproject.org/experiments/ENCSR916GKL/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR916GKL
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB866HSI
size range: 180-500

value: limb

value: tissue

value: Limb from 88 embyronic 11.5 day mice

value: pooled male and female

value: healthy

value: ENCBS681XPR at ENCODE; https://www.encodeproject.org/ENCBS681XPR/


title: WGBS from kidney (ENCLB452ZCL)

description:
https://www.encodeproject.org/experiments/ENCSR906HLA/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse kidney
experiment encode accession: ENCSR906HLA
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB452ZCL
size range: 180-500

value: kidney

value: Kidney from 78 embryonic 15.5 day mice

value: ENCBS899UOK at ENCODE; https://www.encodeproject.org/ENCBS899UOK/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from stomach (ENCLB248JOV)

description:
https://www.encodeproject.org/experiments/ENCSR946JEA/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 16.5 day mouse stomach
experiment encode accession: ENCSR946JEA
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR012BVY
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB248JOV
size range: 300-500

value: stomach

value: Stomach from 41 embyonic 16.5 day mice

value: ENCBS793TEW at ENCODE; https://www.encodeproject.org/ENCBS793TEW/


title: ChIP-seq from forebrain (ENCLB223BYH)

description:
https://www.encodeproject.org/experiments/ENCSR428OEK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR428OEK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR587JRQ
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB223BYH
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (16.5 days)

value: forebrain

value: Forebrain pooled from embyonic 16.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS156DHU at ENCODE; https://www.encodeproject.org/ENCBS156DHU/


title: total RNA-seq from midbrain (ENCLB187TEZ)

description:
https://www.encodeproject.org/experiments/ENCSR908JWT/
***************
biological replicate number: 2
technical replicate number: 1
description: e12.5 midbrain
experiment encode accession: ENCSR908JWT
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB187TEZ
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

library_source: transcriptomic

molecule: total RNA

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days)

value: midbrain

value: Midbrain from 88 embryonic 12.5 day mice

value: embryonic

value: ENCBS280TPA at ENCODE; https://www.encodeproject.org/ENCBS280TPA/


title: ChIP-seq from midbrain (ENCLB350JCL)

description:
https://www.encodeproject.org/experiments/ENCSR428GHF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 15.5 day mouse midbrain
experiment encode accession: ENCSR428GHF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR748XBE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB350JCL
size range: 300-500

value: tissue

value: Midbrain from 62 embryonic 15.5 day mice

value: pooled male and female

value: healthy

value: ENCBS381PEJ at ENCODE; https://www.encodeproject.org/ENCBS381PEJ/


title: total RNA-seq from midbrain (ENCLB839VOV)

description:
https://www.encodeproject.org/experiments/ENCSR908JWT/
***************
biological replicate number: 1
technical replicate number: 1
description: e12.5 midbrain
experiment encode accession: ENCSR908JWT
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB839VOV
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

value: Midbrain from 120 embryonic 12.5 day mice

value: ENCBS309WCU at ENCODE; https://www.encodeproject.org/ENCBS309WCU/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB853YCP)

description:
https://www.encodeproject.org/experiments/ENCSR428OEK/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 16.5 day mouse forebrain
experiment encode accession: ENCSR428OEK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR587JRQ
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB853YCP
size range: 300-500

value: Forebrain from 41 embyonic 16.5 day mice

value: ENCBS512LKA at ENCODE; https://www.encodeproject.org/ENCBS512LKA/


title: WGBS from kidney (ENCLB271PZE)

description:
https://www.encodeproject.org/experiments/ENCSR906HLA/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse kidney
experiment encode accession: ENCSR906HLA
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB271PZE
size range: 180-500

value: kidney

value: Kidney from 78 embryonic 15.5 day mice

value: ENCBS899UOK at ENCODE; https://www.encodeproject.org/ENCBS899UOK/


title: WGBS from kidney (ENCLB317DHZ)

description:
https://www.encodeproject.org/experiments/ENCSR906HLA/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse kidney
experiment encode accession: ENCSR906HLA
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB317DHZ
size range: 180-500

value: Kidney from 62 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS924ZKF at ENCODE; https://www.encodeproject.org/ENCBS924ZKF/


title: ChIP-seq from hindbrain (ENCLB767WUA)

description:
https://www.encodeproject.org/experiments/ENCSR427ZQB/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse hindbrain. NOTE- Files associated with this experiment are undergoing additional review
experiment encode accession: ENCSR427ZQB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR752KDM
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB767WUA
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (16.5 days)

value: hindbrain

value: Hindbrain pooled from embyonic 16.5 day mice

value: embryonic

value: ENCBS436LSH at ENCODE; https://www.encodeproject.org/ENCBS436LSH/


title: WGBS from kidney (ENCLB813HQZ)

description:
https://www.encodeproject.org/experiments/ENCSR906HLA/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse kidney
experiment encode accession: ENCSR906HLA
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB813HQZ
size range: 180-500

value: tissue

value: pooled male and female

value: healthy


title: ChIP-seq from heart (ENCLB011ONK)

description:
https://www.encodeproject.org/experiments/ENCSR886IHN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse heart
experiment encode accession: ENCSR886IHN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR317ENO
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB011ONK
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (11.5 days)

value: heart

value: Heart from 109 embyronic 11.5 day mice

value: ENCBS225RIF at ENCODE; https://www.encodeproject.org/ENCBS225RIF/


title: ChIP-seq from stomach (ENCLB297VMW)

description:
https://www.encodeproject.org/experiments/ENCSR907CPZ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse stomach
experiment encode accession: ENCSR907CPZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR012BVY
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB297VMW
size range: 300-500

value: stomach

value: Stomach from 41 embyonic 16.5 day mice

value: ENCBS793TEW at ENCODE; https://www.encodeproject.org/ENCBS793TEW/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from heart (ENCLB623BWB)

description:
https://www.encodeproject.org/experiments/ENCSR886IHN/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 11.5 day mouse heart
experiment encode accession: ENCSR886IHN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR317ENO
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB623BWB
size range: 300-500

value: Heart from embryonic 11.5 day mice

value: ENCBS046IMM at ENCODE; https://www.encodeproject.org/ENCBS046IMM/


title: ChIP-seq from limb (ENCLB742YBG)

description:
https://www.encodeproject.org/experiments/ENCSR426EZM/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 13.5 day mouse limb
experiment encode accession: ENCSR426EZM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR465WTL
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB742YBG
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (13.5 days)

value: limb

value: Limb from embryonic 13.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS896ZED at ENCODE; https://www.encodeproject.org/ENCBS896ZED/


title: ChIP-seq from midbrain (ENCLB391NZW)

description:
https://www.encodeproject.org/experiments/ENCSR427ZJU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR427ZJU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR889XXJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB391NZW
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex postnatal (0 days)

value: midbrain

value: Midbrain from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS555AAA at ENCODE; https://www.encodeproject.org/ENCBS555AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from lung (ENCLB835IQU)

description:
https://www.encodeproject.org/experiments/ENCSR884MYD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR884MYD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR241RIG
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB835IQU
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex postnatal (0 days)

value: lung

value: tissue

value: Lung from 15 postnatal 0 day mice

value: pooled male and female

value: healthy

value: ENCBS042AAA at ENCODE; https://www.encodeproject.org/ENCBS042AAA/


title: ChIP-seq from limb (ENCLB480RPC)

description:
https://www.encodeproject.org/experiments/ENCSR905FFU/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K27ac ChIP-seq on embryonic 13.5 day mouse limb
experiment encode accession: ENCSR905FFU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR465WTL
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB480RPC
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: embryonic

value: ENCBS176PGP at ENCODE; https://www.encodeproject.org/ENCBS176PGP/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB665FZY)

description:
https://www.encodeproject.org/experiments/ENCSR880HDV/
***************
biological replicate number: 1
technical replicate number: 1,2,3
description: Control ChIP-seq on embryonic 15.5 day mouse forebrain
experiment encode accession: ENCSR880HDV
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB665FZY
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 4000

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (15.5 days)

value: Control

value: forebrain

value: Forebrain from 78 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS811RMD at ENCODE; https://www.encodeproject.org/ENCBS811RMD/


title: ChIP-seq from limb (ENCLB919MLK)

description:
https://www.encodeproject.org/experiments/ENCSR897WBY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR897WBY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB919MLK
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (11.5 days)

value: limb

value: Limb from 88 embyronic 11.5 day mice

value: ENCBS681XPR at ENCODE; https://www.encodeproject.org/ENCBS681XPR/


title: ChIP-seq from heart (ENCLB798GYF)

description:
https://www.encodeproject.org/experiments/ENCSR424WHM/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR424WHM
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB798GYF
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (15.5 days)

value: heart

value: Heart from 62 embryonic 15.5 day mice

value: ENCBS909LOF at ENCODE; https://www.encodeproject.org/ENCBS909LOF/


title: ChIP-seq from midbrain (ENCLB360NMQ)

description:
https://www.encodeproject.org/experiments/ENCSR427ZJU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR427ZJU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR889XXJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB360NMQ
size range: 300-500

value: midbrain

value: tissue

value: Midbrain from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: ENCBS039AAA at ENCODE; https://www.encodeproject.org/ENCBS039AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from limb (ENCLB158RGC)

description:
https://www.encodeproject.org/experiments/ENCSR897WBY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR897WBY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB158RGC
size range: 300-500

value: Limb from 109 embyronic 11.5 day mice

value: embryonic

value: healthy

value: ENCBS066IEL at ENCODE; https://www.encodeproject.org/ENCBS066IEL/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from midbrain (ENCLB331HCS)

description:
https://www.encodeproject.org/experiments/ENCSR874LLF/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR874LLF
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB331HCS
size range: 180-500

value: Midbrain from pooled postnatal 0 day mice

value: Len Pennacchio, LBNL

value: ENCBS555AAA at ENCODE; https://www.encodeproject.org/ENCBS555AAA/


title: ChIP-seq from liver (ENCLB095FSV)

description:
https://www.encodeproject.org/experiments/ENCSR889MYY/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9ac ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR889MYY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR274AQL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB095FSV
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days)

value: liver

value: Liver from 62 embryonic 15.5 day mice

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/


title: ChIP-seq from intestine (ENCLB372XLA)

description:
https://www.encodeproject.org/experiments/ENCSR424END/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 14.5 day mouse intestine
experiment encode accession: ENCSR424END
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR645QSY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB372XLA
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex embryo (14.5 days)

value: intestine

value: tissue

value: Intestine from 24 embryonic 14.5 day mice

value: ENCBS008AAA at ENCODE; https://www.encodeproject.org/ENCBS008AAA/


title: ChIP-seq from limb (ENCLB821BJR)

description:
https://www.encodeproject.org/experiments/ENCSR426EZM/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 13.5 day mouse limb
experiment encode accession: ENCSR426EZM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR465WTL
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB821BJR
size range: 300-500

value: limb

value: Limb from embryonic 13.5 day mice

value: pooled male and female

value: ENCBS176PGP at ENCODE; https://www.encodeproject.org/ENCBS176PGP/


title: WGBS from midbrain (ENCLB568FPF)

description:
https://www.encodeproject.org/experiments/ENCSR874LLF/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR874LLF
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB568FPF
size range: 180-500

value: midbrain

value: Midbrain from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: healthy

value: ENCBS039AAA at ENCODE; https://www.encodeproject.org/ENCBS039AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from heart (ENCLB808WGG)

description:
https://www.encodeproject.org/experiments/ENCSR424WHM/
***************
biological replicate number: 1
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR424WHM
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB808WGG
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

value: Control

value: heart

value: Heart from 78 embryonic 15.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS595EMK at ENCODE; https://www.encodeproject.org/ENCBS595EMK/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from stomach (ENCLB366MNW)

description:
https://www.encodeproject.org/experiments/ENCSR907CPZ/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse stomach
experiment encode accession: ENCSR907CPZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR012BVY
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB366MNW
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (16.5 days)

value: stomach

value: tissue

value: Stomach pooled from embyonic 16.5 day mice

value: ENCBS243DCE at ENCODE; https://www.encodeproject.org/ENCBS243DCE/


title: ChIP-seq from kidney (ENCLB278HJC)

description:
https://www.encodeproject.org/experiments/ENCSR883ASH/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR883ASH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB278HJC
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: kidney

value: Kidney from 41 embyonic 16.5 day mice

value: pooled male and female

value: ENCBS529OHA at ENCODE; https://www.encodeproject.org/ENCBS529OHA/


title: ChIP-seq from kidney (ENCLB937TTK)

description:
https://www.encodeproject.org/experiments/ENCSR883ASH/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR883ASH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB937TTK
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: Kidney pooled from embyonic 16.5 day mice

value: healthy

value: ENCBS519MUD at ENCODE; https://www.encodeproject.org/ENCBS519MUD/


title: WGBS from midbrain (ENCLB174QKB)

description:
https://www.encodeproject.org/experiments/ENCSR874LLF/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR874LLF
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB174QKB
size range: 180-500

value: midbrain

value: Midbrain from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS039AAA at ENCODE; https://www.encodeproject.org/ENCBS039AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from forebrain (ENCLB112HPZ)

description:
https://www.encodeproject.org/experiments/ENCSR880HDV/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on embryonic 15.5 day mouse forebrain
experiment encode accession: ENCSR880HDV
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB112HPZ
size range: 300-500

value: Control

value: forebrain

value: Forebrain from 62 embryonic 15.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS841GER at ENCODE; https://www.encodeproject.org/ENCBS841GER/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from lung (ENCLB048MJK)

description:
https://www.encodeproject.org/experiments/ENCSR884MYD/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR884MYD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR241RIG
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB048MJK
size range: 300-500

value: lung

value: tissue

value: Lung from pooled postnatal 0 day mice

value: pooled male and female

value: ENCBS558AAA at ENCODE; https://www.encodeproject.org/ENCBS558AAA/


title: WGBS from midbrain (ENCLB126BMT)

description:
https://www.encodeproject.org/experiments/ENCSR874LLF/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR874LLF
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB126BMT
size range: 180-500

value: midbrain

value: Midbrain from pooled postnatal 0 day mice

value: healthy

value: ENCBS555AAA at ENCODE; https://www.encodeproject.org/ENCBS555AAA/


title: ChIP-seq from limb (ENCLB467IUP)

description:
https://www.encodeproject.org/experiments/ENCSR871YCT/
***************
biological replicate number: 2
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR871YCT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-07-07
lab: Bing Ren, UCSD
library encode accession: ENCLB467IUP
size range: 300-500

value: limb

value: Limb from 88 embyronic 11.5 day mice

value: ENCBS681XPR at ENCODE; https://www.encodeproject.org/ENCBS681XPR/


title: WGBS from midbrain (ENCLB206CZV)

description:
https://www.encodeproject.org/experiments/ENCSR871FJZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse midbrain
experiment encode accession: ENCSR871FJZ
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB206CZV
size range: 180-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (16.5 days)

value: Midbrain pooled from embyonic 16.5 day mice

value: ENCBS684MLE at ENCODE; https://www.encodeproject.org/ENCBS684MLE/


title: ChIP-seq from limb (ENCLB526RWB)

description:
https://www.encodeproject.org/experiments/ENCSR416OYH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 13.5 day mouse limb
experiment encode accession: ENCSR416OYH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR465WTL
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB526RWB
size range: 300-500

value: Limb from embryonic 13.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS176PGP at ENCODE; https://www.encodeproject.org/ENCBS176PGP/


title: ChIP-seq from hindbrain (ENCLB224SPH)

description:
https://www.encodeproject.org/experiments/ENCSR417TXZ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR417TXZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR896PWV
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB224SPH
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex embryo (14.5 days)

value: hindbrain

value: tissue

value: Hindbrain from 34 embryonic 14.5 day mice

value: ENCBS016AAA at ENCODE; https://www.encodeproject.org/ENCBS016AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from midbrain (ENCLB005YSX)

description:
https://www.encodeproject.org/experiments/ENCSR871FJZ/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse midbrain
experiment encode accession: ENCSR871FJZ
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB005YSX
size range: 180-500

value: midbrain

value: pooled male and female

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from embryonic facial prominence (ENCLB198OSG)

description:
https://www.encodeproject.org/experiments/ENCSR420MUV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR420MUV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742ZUI
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB198OSG
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (13.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from embryonic 13.5 day mice

value: healthy

value: ENCBS764ZZN at ENCODE; https://www.encodeproject.org/ENCBS764ZZN/


title: ChIP-seq from limb (ENCLB668AGV)

description:
https://www.encodeproject.org/experiments/ENCSR416OYH/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 13.5 day mouse limb
experiment encode accession: ENCSR416OYH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR465WTL
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB668AGV
size range: 300-500

value: limb

value: ENCBS896ZED at ENCODE; https://www.encodeproject.org/ENCBS896ZED/


title: ChIP-seq from hindbrain (ENCLB975RJN)

description:
https://www.encodeproject.org/experiments/ENCSR864OWV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 16.5 day mouse hindbrain
experiment encode accession: ENCSR864OWV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR752KDM
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB975RJN
size range: 300-500

value: Hindbrain from 37 embryonic 16.5 day mice

value: embryonic

value: ENCBS281ZLI at ENCODE; https://www.encodeproject.org/ENCBS281ZLI/


title: ChIP-seq from embryonic facial prominence (ENCLB634RQJ)

description:
https://www.encodeproject.org/experiments/ENCSR420MUV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR420MUV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742ZUI
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB634RQJ
size range: 300-500

value: Len Pennacchio, LBNL

value: ENCBS847MIW at ENCODE; https://www.encodeproject.org/ENCBS847MIW/


title: ChIP-seq from liver (ENCLB696IFC)

description:
https://www.encodeproject.org/experiments/ENCSR855NKG/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR855NKG
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR274AQL
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB696IFC
size range: 300-500

value: liver

value: tissue

value: Liver from 62 embryonic 15.5 day mice

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/


title: ChIP-seq from stomach (ENCLB443RTN)

description:
https://www.encodeproject.org/experiments/ENCSR415FLZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse stomach
experiment encode accession: ENCSR415FLZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR240XQT
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB443RTN
size range: 300-500

source_name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (15.5 days)

value: stomach

value: Stomach from 78 embryonic 15.5 day mice

value: pooled male and female

value: ENCBS915SZN at ENCODE; https://www.encodeproject.org/ENCBS915SZN/


title: total RNA-seq from embryonic facial prominence (ENCLB968JLC)

description:
https://www.encodeproject.org/experiments/ENCSR851HEC/
***************
biological replicate number: 1
technical replicate number: 1
description: e12.5 embryonic facial prominence
experiment encode accession: ENCSR851HEC
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB968JLC
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (12.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from 120 embryonic 12.5 day mice

value: healthy

value: ENCBS047UII at ENCODE; https://www.encodeproject.org/ENCBS047UII/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from intestine (ENCLB508EOJ)

description:
https://www.encodeproject.org/experiments/ENCSR842QTB/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR842QTB
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB508EOJ
size range: 180-500

source_name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (15.5 days)

value: intestine

value: Intestine from 62 embryonic 15.5 day mice

value: embryonic

value: ENCBS836WEU at ENCODE; https://www.encodeproject.org/ENCBS836WEU/


title: ChIP-seq from midbrain (ENCLB725ODH)

description:
https://www.encodeproject.org/experiments/ENCSR413VHH/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR413VHH
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB725ODH
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex embryo (14.5 days)

value: Control

value: midbrain

value: Midbrain from 24 embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS003AAA at ENCODE; https://www.encodeproject.org/ENCBS003AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from midbrain (ENCLB209JYS)

description:
https://www.encodeproject.org/experiments/ENCSR413VHH/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR413VHH
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB209JYS
size range: 300-500

value: tissue

value: Midbrain from 34 embryonic 14.5 day mice

value: pooled male and female

value: ENCBS015AAA at ENCODE; https://www.encodeproject.org/ENCBS015AAA/


title: WGBS from midbrain (ENCLB646ZOP)

description:
https://www.encodeproject.org/experiments/ENCSR871FJZ/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse midbrain
experiment encode accession: ENCSR871FJZ
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB646ZOP
size range: 180-500

value: Midbrain from 37 embryonic 16.5 day mice

value: healthy

value: ENCBS463JSE at ENCODE; https://www.encodeproject.org/ENCBS463JSE/


title: total RNA-seq from embryonic facial prominence (ENCLB432GJF)

description:
https://www.encodeproject.org/experiments/ENCSR851HEC/
***************
biological replicate number: 2
technical replicate number: 1
description: e12.5 embryonic facial prominence
experiment encode accession: ENCSR851HEC
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB432GJF
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

value: embryonic facial prominence

value: Embryonic facial prominence from 88 embryonic 12.5 day mice

value: ENCBS399GYO at ENCODE; https://www.encodeproject.org/ENCBS399GYO/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from midbrain (ENCLB237SCR)

description:
https://www.encodeproject.org/experiments/ENCSR871FJZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 16.5 day mouse midbrain
experiment encode accession: ENCSR871FJZ
assay title: WGBS
assembly: mm10
encode release date: 2014-12-17
lab: Joe Ecker, Salk
library encode accession: ENCLB237SCR
size range: 180-500

value: embryonic


title: ChIP-seq from stomach (ENCLB960LTY)

description:
https://www.encodeproject.org/experiments/ENCSR415FLZ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse stomach
experiment encode accession: ENCSR415FLZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR240XQT
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB960LTY
size range: 300-500

value: stomach

value: Stomach from 62 embryonic 15.5 day mice

value: ENCBS355TAQ at ENCODE; https://www.encodeproject.org/ENCBS355TAQ/


title: WGBS from intestine (ENCLB449NKJ)

description:
https://www.encodeproject.org/experiments/ENCSR842QTB/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR842QTB
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB449NKJ
size range: 180-500

value: intestine

value: Intestine from 78 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS401LLS at ENCODE; https://www.encodeproject.org/ENCBS401LLS/


title: ChIP-seq from kidney (ENCLB125AGG)

description:
https://www.encodeproject.org/experiments/ENCSR846ZTT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR846ZTT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB125AGG
size range: 300-500

source_name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (16.5 days)

value: kidney

value: tissue

value: Kidney pooled from embyonic 16.5 day mice

value: pooled male and female

value: ENCBS519MUD at ENCODE; https://www.encodeproject.org/ENCBS519MUD/


title: ChIP-seq from intestine (ENCLB779TLU)

description:
https://www.encodeproject.org/experiments/ENCSR412ODT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR412ODT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR872UEE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB779TLU
size range: 300-500

value: healthy


title: ChIP-seq from kidney (ENCLB597SMZ)

description:
https://www.encodeproject.org/experiments/ENCSR846ZTT/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR846ZTT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB597SMZ
size range: 300-500

value: Kidney from 41 embyonic 16.5 day mice

value: ENCBS529OHA at ENCODE; https://www.encodeproject.org/ENCBS529OHA/


title: WGBS from kidney (ENCLB754UHQ)

description:
https://www.encodeproject.org/experiments/ENCSR841TRV/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR841TRV
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB754UHQ
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex embryo (14.5 days)

value: Kidney from pooled embryonic 14.5 day mice

value: ENCBS569AAA at ENCODE; https://www.encodeproject.org/ENCBS569AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from intestine (ENCLB401KMA)

description:
https://www.encodeproject.org/experiments/ENCSR842QTB/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR842QTB
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB401KMA
size range: 180-500

value: Intestine from 62 embryonic 15.5 day mice

value: embryonic

value: ENCBS836WEU at ENCODE; https://www.encodeproject.org/ENCBS836WEU/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from kidney (ENCLB338HPX)

description:
https://www.encodeproject.org/experiments/ENCSR841TRV/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR841TRV
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB338HPX
size range: 180-500

value: Len Pennacchio, LBNL


title: ChIP-seq from intestine (ENCLB083GAY)

description:
https://www.encodeproject.org/experiments/ENCSR412ODT/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR412ODT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR872UEE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB083GAY
size range: 300-500

value: intestine


title: ChIP-seq from limb (ENCLB341JGN)

description:
https://www.encodeproject.org/experiments/ENCSR871YCT/
***************
biological replicate number: 1
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 11.5 day mouse limb
experiment encode accession: ENCSR871YCT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR949ZLW
encode release date: 2014-07-07
lab: Bing Ren, UCSD
library encode accession: ENCLB341JGN
size range: 300-500

value: limb

value: Limb from 109 embyronic 11.5 day mice

value: ENCBS066IEL at ENCODE; https://www.encodeproject.org/ENCBS066IEL/


title: WGBS from intestine (ENCLB694VKM)

description:
https://www.encodeproject.org/experiments/ENCSR842QTB/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR842QTB
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB694VKM
size range: 180-500

value: tissue

value: Intestine from 78 embryonic 15.5 day mice

value: pooled male and female

value: ENCBS401LLS at ENCODE; https://www.encodeproject.org/ENCBS401LLS/


title: WGBS from kidney (ENCLB648FFI)

description:
https://www.encodeproject.org/experiments/ENCSR841TRV/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR841TRV
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB648FFI
size range: 180-500

value: kidney

value: healthy

value: ENCBS565AAA at ENCODE; https://www.encodeproject.org/ENCBS565AAA/


title: WGBS from kidney (ENCLB807CDR)

description:
https://www.encodeproject.org/experiments/ENCSR841TRV/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse kidney
experiment encode accession: ENCSR841TRV
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB807CDR
size range: 180-500

value: Kidney from pooled embryonic 14.5 day mice

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from intestine (ENCLB244KMM)

description:
https://www.encodeproject.org/experiments/ENCSR410YIY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR410YIY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR872UEE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB244KMM
size range: 300-500

value: embryonic


title: ChIP-seq from intestine (ENCLB493YBQ)

description:
https://www.encodeproject.org/experiments/ENCSR410YIY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 15.5 day mouse intestine
experiment encode accession: ENCSR410YIY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR872UEE
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB493YBQ
size range: 300-500

value: Intestine from 62 embryonic 15.5 day mice

value: ENCBS836WEU at ENCODE; https://www.encodeproject.org/ENCBS836WEU/


title: ChIP-seq from lung (ENCLB716FIR)

description:
https://www.encodeproject.org/experiments/ENCSR861MUP/
***************
biological replicate number: 1
technical replicate number: 2,1,3
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse lung
experiment encode accession: ENCSR861MUP
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR371AKO
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB716FIR
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (15.5 days)

value: lung

value: Lung from 78 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS467HSM at ENCODE; https://www.encodeproject.org/ENCBS467HSM/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from kidney (ENCLB170SFL)

description:
https://www.encodeproject.org/experiments/ENCSR821GHK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR821GHK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB170SFL
size range: 300-500

value: tissue

value: Kidney pooled from embyonic 16.5 day mice

value: ENCBS519MUD at ENCODE; https://www.encodeproject.org/ENCBS519MUD/


title: ChIP-seq from midbrain (ENCLB401EQA)

description:
https://www.encodeproject.org/experiments/ENCSR817FFF/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 16.5 day mouse midbrain
experiment encode accession: ENCSR817FFF
assay title: ChIP-seq
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB401EQA
size range: 300-500

value: Control

value: midbrain

value: Midbrain pooled from embyonic 16.5 day mice

value: pooled male and female

value: ENCBS684MLE at ENCODE; https://www.encodeproject.org/ENCBS684MLE/


title: ChIP-seq from intestine (ENCLB889DFC)

description:
https://www.encodeproject.org/experiments/ENCSR829YGD/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR829YGD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR635JIC
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB889DFC
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (16.5 days)

value: intestine

value: Intestine from 41 embyonic 16.5 day mice

value: healthy

value: ENCBS072GMU at ENCODE; https://www.encodeproject.org/ENCBS072GMU/


title: ChIP-seq from forebrain (ENCLB710MDC)

description:
https://www.encodeproject.org/experiments/ENCSR831YAX/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR831YAX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB710MDC
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days)

value: forebrain

value: Forebrain from 24 embyonic 14.5 day mice

value: embryonic

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from hindbrain (ENCLB427OWI)

description:
https://www.encodeproject.org/experiments/ENCSR804EWT/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR804EWT
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB427OWI
size range: 180-500

value: hindbrain

value: tissue

value: Hindbrain from 34 embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS016AAA at ENCODE; https://www.encodeproject.org/ENCBS016AAA/


title: ChIP-seq from kidney (ENCLB439JVC)

description:
https://www.encodeproject.org/experiments/ENCSR821GHK/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR821GHK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR642DUV
encode release date: 2016-02-17
lab: Bing Ren, UCSD
library encode accession: ENCLB439JVC
size range: 300-500

value: kidney

value: Kidney from 41 embyonic 16.5 day mice

value: ENCBS529OHA at ENCODE; https://www.encodeproject.org/ENCBS529OHA/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB753UZL)

description:
https://www.encodeproject.org/experiments/ENCSR402ZLE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse forebrain
experiment encode accession: ENCSR402ZLE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR880HDV
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB753UZL
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (15.5 days)

value: Forebrain from 62 embryonic 15.5 day mice

value: pooled male and female

value: ENCBS841GER at ENCODE; https://www.encodeproject.org/ENCBS841GER/


title: WGBS from hindbrain (ENCLB599IPU)

description:
https://www.encodeproject.org/experiments/ENCSR804EWT/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR804EWT
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB599IPU
size range: 180-500

value: Hindbrain from 24 embryonic 14.5 day mice

value: healthy

value: ENCBS004AAA at ENCODE; https://www.encodeproject.org/ENCBS004AAA/


title: ChIP-seq from intestine (ENCLB434RXH)

description:
https://www.encodeproject.org/experiments/ENCSR829YGD/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR829YGD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR635JIC
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB434RXH
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: intestine

value: Intestine pooled from embyonic 16.5 day mice

value: embryonic

value: ENCBS856EWN at ENCODE; https://www.encodeproject.org/ENCBS856EWN/


title: WGBS from hindbrain (ENCLB457KUF)

description:
https://www.encodeproject.org/experiments/ENCSR804EWT/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR804EWT
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB457KUF
size range: 180-500

value: hindbrain

value: tissue

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from hindbrain (ENCLB209FTY)

description:
https://www.encodeproject.org/experiments/ENCSR809NWL/
***************
biological replicate number: 1
technical replicate number: 1,2,3
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse hindbrain
experiment encode accession: ENCSR809NWL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685UUM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB209FTY
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (15.5 days)

value: Hindbrain from 78 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS958AHU at ENCODE; https://www.encodeproject.org/ENCBS958AHU/


title: ChIP-seq from forebrain (ENCLB637HYO)

description:
https://www.encodeproject.org/experiments/ENCSR400TGE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR400TGE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR024JAN
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB637HYO
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (11.5 days)

value: forebrain

value: Forebrain from 109 embyronic 11.5 day mice

value: ENCBS745VOM at ENCODE; https://www.encodeproject.org/ENCBS745VOM/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from hindbrain (ENCLB223YOW)

description:
https://www.encodeproject.org/experiments/ENCSR804EWT/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR804EWT
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB223YOW
size range: 180-500

value: Hindbrain from 34 embryonic 14.5 day mice

value: pooled male and female

value: ENCBS016AAA at ENCODE; https://www.encodeproject.org/ENCBS016AAA/


title: ChIP-seq from forebrain (ENCLB909LWO)

description:
https://www.encodeproject.org/experiments/ENCSR400TGE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR400TGE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR024JAN
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB909LWO
size range: 300-500

value: Forebrain from 88 embyronic 11.5 day mice

value: healthy

value: ENCBS720JOH at ENCODE; https://www.encodeproject.org/ENCBS720JOH/


title: ChIP-seq from hindbrain (ENCLB079SAM)

description:
https://www.encodeproject.org/experiments/ENCSR797EYS/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 16.5 day mouse hindbrain
experiment encode accession: ENCSR797EYS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR752KDM
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB079SAM
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (16.5 days)

value: Hindbrain from 37 embryonic 16.5 day mice

value: embryonic

value: ENCBS281ZLI at ENCODE; https://www.encodeproject.org/ENCBS281ZLI/


title: ChIP-seq from stomach (ENCLB910YLU)

description:
https://www.encodeproject.org/experiments/ENCSR798VHN/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 16.5 day mouse stomach
experiment encode accession: ENCSR798VHN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR012BVY
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB910YLU
size range: 300-500

source_name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (16.5 days)

value: stomach

value: tissue

value: Stomach from 41 embyonic 16.5 day mice

value: ENCBS793TEW at ENCODE; https://www.encodeproject.org/ENCBS793TEW/


title: ChIP-seq from forebrain (ENCLB347LLA)

description:
https://www.encodeproject.org/experiments/ENCSR398NCK/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on postnatal 0 day mouse forebrain
experiment encode accession: ENCSR398NCK
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB347LLA
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex postnatal (0 days)

value: Control

value: forebrain

value: Forebrain of pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: Len Pennacchio, LBNL

value: ENCBS554AAA at ENCODE; https://www.encodeproject.org/ENCBS554AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from forebrain (ENCLB592HQJ)

description:
https://www.encodeproject.org/experiments/ENCSR402ZLE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse forebrain
experiment encode accession: ENCSR402ZLE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR880HDV
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB592HQJ
size range: 300-500

value: Forebrain from 78 embryonic 15.5 day mice

value: pooled male and female

value: healthy

value: ENCBS811RMD at ENCODE; https://www.encodeproject.org/ENCBS811RMD/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from liver (ENCLB740QQU)

description:
https://www.encodeproject.org/experiments/ENCSR788XSZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR788XSZ
assay title: WGBS
assembly: mm10
encode release date: 2014-09-03
lab: Joe Ecker, Salk
library encode accession: ENCLB740QQU
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap liver tissue mixed sex embryo (14.5 days)

value: liver

value: Liver from embryonic 14.5 day mice

value: embryonic

value: ENCBS194VTP at ENCODE; https://www.encodeproject.org/ENCBS194VTP/


title: WGBS from liver (ENCLB616YNU)

description:
https://www.encodeproject.org/experiments/ENCSR788XSZ/
***************
biological replicate number: 1
technical replicate number: 3
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR788XSZ
assay title: WGBS
assembly: mm10
encode release date: 2014-09-03
lab: Joe Ecker, Salk
library encode accession: ENCLB616YNU
size range: 180-500

value: tissue


title: WGBS from liver (ENCLB319ZCZ)

description:
https://www.encodeproject.org/experiments/ENCSR788XSZ/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR788XSZ
assay title: WGBS
assembly: mm10
encode release date: 2014-09-03
lab: Joe Ecker, Salk
library encode accession: ENCLB319ZCZ
size range: 180-500

value: ENCBS096GAJ at ENCODE; https://www.encodeproject.org/ENCBS096GAJ/


title: WGBS from liver (ENCLB932OCH)

description:
https://www.encodeproject.org/experiments/ENCSR788XSZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR788XSZ
assay title: WGBS
assembly: mm10
encode release date: 2014-09-03
lab: Joe Ecker, Salk
library encode accession: ENCLB932OCH
size range: 180-500


title: ChIP-seq from stomach (ENCLB364DTK)

description:
https://www.encodeproject.org/experiments/ENCSR798VHN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 16.5 day mouse stomach
experiment encode accession: ENCSR798VHN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR012BVY
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB364DTK
size range: 300-500

value: stomach

value: Stomach pooled from embyonic 16.5 day mice

value: ENCBS243DCE at ENCODE; https://www.encodeproject.org/ENCBS243DCE/


title: microRNA-seq from kidney (ENCLB665NWD)

description:
https://www.encodeproject.org/experiments/ENCSR396EAG/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR396EAG
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB665NWD
size range: <30

value: kidney

value: Kidney from 41 embyonic 16.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS529OHA at ENCODE; https://www.encodeproject.org/ENCBS529OHA/


title: ChIP-seq from midbrain (ENCLB243JXI)

description:
https://www.encodeproject.org/experiments/ENCSR391WSS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR391WSS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR889XXJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB243JXI
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex postnatal (0 days)

value: midbrain

value: Midbrain from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: ENCBS039AAA at ENCODE; https://www.encodeproject.org/ENCBS039AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from heart (ENCLB248XLG)

description:
https://www.encodeproject.org/experiments/ENCSR781ORQ/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 16.5 day mouse heart
experiment encode accession: ENCSR781ORQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR685AMF
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB248XLG
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (16.5 days)

value: heart

value: Heart from 41 embyonic 16.5 day mice

value: embryonic

value: healthy

value: ENCBS217XWR at ENCODE; https://www.encodeproject.org/ENCBS217XWR/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from lung (ENCLB406NXI)

description:
https://www.encodeproject.org/experiments/ENCSR776RJR/
***************
biological replicate number: 1
technical replicate number: 2,3,1
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse lung
experiment encode accession: ENCSR776RJR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR371AKO
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB406NXI
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: lung

value: tissue

value: Lung from 78 embryonic 15.5 day mice

value: ENCBS467HSM at ENCODE; https://www.encodeproject.org/ENCBS467HSM/


title: ChIP-seq from hindbrain (ENCLB146MTC)

description:
https://www.encodeproject.org/experiments/ENCSR771ILS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse hindbrain
experiment encode accession: ENCSR771ILS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR066SPF
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB146MTC
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex postnatal (0 days)

value: hindbrain

value: Hindbrain from 15 postnatal 0 day mice

value: Len Pennacchio, LBNL

value: ENCBS040AAA at ENCODE; https://www.encodeproject.org/ENCBS040AAA/


title: ChIP-seq from neural tube (ENCLB359PRG)

description:
https://www.encodeproject.org/experiments/ENCSR776QRL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 14.5 day mouse neural tube
experiment encode accession: ENCSR776QRL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR254WNU
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB359PRG
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue mixed sex embryo (14.5 days)

value: neural tube

value: Neural tube from 24 embryonic 14.5 day mice

value: pooled male and female

value: ENCBS013AAA at ENCODE; https://www.encodeproject.org/ENCBS013AAA/


title: total RNA-seq from limb (ENCLB637CNF)

description:
https://www.encodeproject.org/experiments/ENCSR750YSX/
***************
biological replicate number: 2
technical replicate number: 1
description: e12.5 limb
experiment encode accession: ENCSR750YSX
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB637CNF
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (12.5 days)

value: limb

value: Limb from 68 embryonic 12.5 day mice

value: ENCBS313XRY at ENCODE; https://www.encodeproject.org/ENCBS313XRY/


title: ChIP-seq from intestine (ENCLB581WJC)

description:
https://www.encodeproject.org/experiments/ENCSR389EYR/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR389EYR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB581WJC
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)

value: intestine

value: Intestine from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: healthy

value: ENCBS560AAA at ENCODE; https://www.encodeproject.org/ENCBS560AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from lung (ENCLB040HIR)

description:
https://www.encodeproject.org/experiments/ENCSR758FWH/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR758FWH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB040HIR
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (16.5 days)

value: lung

value: tissue

value: Lung pooled from embyonic 16.5 day mice

value: embryonic

value: ENCBS377RBN at ENCODE; https://www.encodeproject.org/ENCBS377RBN/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from lung (ENCLB392IQA)

description:
https://www.encodeproject.org/experiments/ENCSR758FWH/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 16.5 day mouse lung
experiment encode accession: ENCSR758FWH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR559FAB
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB392IQA
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: Lung from 41 embyonic 16.5 day mice

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS833ZFI at ENCODE; https://www.encodeproject.org/ENCBS833ZFI/


title: ChIP-seq from lung (ENCLB698JLM)

description:
https://www.encodeproject.org/experiments/ENCSR398TTY/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse lung
experiment encode accession: ENCSR398TTY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR371AKO
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB698JLM
size range: 300-500

source_name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (15.5 days)

value: Lung from 78 embryonic 15.5 day mice

value: ENCBS467HSM at ENCODE; https://www.encodeproject.org/ENCBS467HSM/


title: WGBS from liver (ENCLB462RXN)

description:
https://www.encodeproject.org/experiments/ENCSR788XSZ/
***************
biological replicate number: 2
technical replicate number: 3
description: Whole genome bisulfite-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR788XSZ
assay title: WGBS
assembly: mm10
encode release date: 2014-09-03
lab: Joe Ecker, Salk
library encode accession: ENCLB462RXN
size range: 180-500

value: liver

value: Liver from embryonic 14.5 day mice

value: ENCBS096GAJ at ENCODE; https://www.encodeproject.org/ENCBS096GAJ/


title: microRNA-seq from kidney (ENCLB614ZPP)

description:
https://www.encodeproject.org/experiments/ENCSR396EAG/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on embryonic 16.5 day mouse kidney
experiment encode accession: ENCSR396EAG
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB614ZPP
size range: <30

source_name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (16.5 days)

value: kidney

value: Kidney pooled from embyonic 16.5 day mice

value: healthy

value: ENCBS519MUD at ENCODE; https://www.encodeproject.org/ENCBS519MUD/


title: ChIP-seq from lung (ENCLB915JDK)

description:
https://www.encodeproject.org/experiments/ENCSR398TTY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse lung
experiment encode accession: ENCSR398TTY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR371AKO
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB915JDK
size range: 300-500

value: lung

value: tissue

value: Lung from 62 embryonic 15.5 day mice

value: ENCBS217WPC at ENCODE; https://www.encodeproject.org/ENCBS217WPC/


title: ChIP-seq from hindbrain (ENCLB006BZC)

description:
https://www.encodeproject.org/experiments/ENCSR752KDM/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 16.5 day mouse hindbrain
experiment encode accession: ENCSR752KDM
assay title: ChIP-seq
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB006BZC
size range: 300-500

value: Control

value: hindbrain

value: Hindbrain pooled from embyonic 16.5 day mice

value: embryonic

value: ENCBS436LSH at ENCODE; https://www.encodeproject.org/ENCBS436LSH/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from embryonic facial prominence (ENCLB351UIO)

description:
https://www.encodeproject.org/experiments/ENCSR382DRK/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 15.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR382DRK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR981PSX
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB351UIO
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (15.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from 62 embryonic 15.5 day mice

value: pooled male and female

value: Len Pennacchio, LBNL

value: ENCBS900XQR at ENCODE; https://www.encodeproject.org/ENCBS900XQR/


title: ChIP-seq from embryonic facial prominence (ENCLB423YEL)

description:
https://www.encodeproject.org/experiments/ENCSR382DRK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 15.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR382DRK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR981PSX
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB423YEL
size range: 300-500

value: Embryonic facial prominence from 78 embryonic 15.5 day mice

value: healthy

value: ENCBS543BPM at ENCODE; https://www.encodeproject.org/ENCBS543BPM/


title: total RNA-seq from limb (ENCLB656OMB)

description:
https://www.encodeproject.org/experiments/ENCSR750YSX/
***************
biological replicate number: 1
technical replicate number: 1
description: e12.5 limb
experiment encode accession: ENCSR750YSX
assay title: total RNA-seq
assembly: mm10
encode release date: 2016-05-03
lab: Barbara Wold, Caltech
library encode accession: ENCLB656OMB
size range: >200
spikeins used: /references/ENCSR884LPM/
nucleic acid starting quantity: 10.0
nucleic acid starting quantity units: ng

value: limb

value: tissue

value: Limb from 88 embryonic 12.5 day mice

value: ENCBS731DGJ at ENCODE; https://www.encodeproject.org/ENCBS731DGJ/