title: total RNA-seq from subcutaneous preadipocyte (ENCLB555ATJ)

description:
https://www.encodeproject.org/experiments/ENCSR000CUM/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from subcutaneous white pre-adipocyte primary whole cells, HWP isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUM
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ATJ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens subcutaneous preadipocyte primary cell female adult (62 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/32cc412f-a312-41ed-8f5a-4bed8ddbdf51/@@download/attachment/LID47254.pdf

value: subcutaneous preadipocyte

value: primary cell

value: White Preadipocytes (HWP) cells from the subcutaneous upper arm region of a 62 year old caucasian female

value: 62 year

value: adult

value: ENCBS474ENC at ENCODE; https://www.encodeproject.org/ENCBS474ENC/

value: Derived from ENCODE donor ENCDO143AAA; https://www.encodeproject.org/ENCDO143AAA/

value: ENCODE dbxrefs HWP_8120201.5; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HWP_8120201.5

value: ENCODE dbxrefs HWP; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HWP

value: PromoCell sample source; http://www.promocell.com/nc/products/human-primary-cells/preadipocytes/?sword_list%5B%5D=HWP


title: total RNA-seq from osteoblast (ENCLB555ATZ)

status: Public on Mar 18 2016

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR000CUF/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA-seq on human HOB whole cell long total RNA.The libraries contained in this experiment come from osteoblast primary whole cells, HOB  isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUF
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ATZ
size range: >200
spikeins used: /references/ENCSR470JZL/

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Homo sapiens

source_name: Homo sapiens osteoblast primary cell male adult (62 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ee640a59-993c-4c0c-91e0-ac75364cb2b5/@@download/attachment/LID47252.pdf

value: osteoblast

tag: description

value: Osteoblasts (HOB) from femoral head cancellous bone that was surgically resected from a 62 year old caucasian male.

tag: biosample encode accession

tag: age

tag: dev stage

tag: passage number

tag: Sex

value: male

tag: health state

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

tag: lab

value: Thomas Gingeras, CSHL

tag: link

value: ENCBS463ENC at ENCODE; https://www.encodeproject.org/ENCBS463ENC/

value: Derived from ENCODE donor ENCDO123AAA; https://www.encodeproject.org/ENCDO123AAA/

value: ENCODE dbxrefs HOB_0090202.1; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HOB_0090202.1

value: ENCODE dbxrefs HOB; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HOB

value: PromoCell sample source; http://www.promocell.com/nc/products/human-primary-cells/osteoblasts/?sword_list%5B%5D=HOB


title: total RNA-seq from vein endothelial cell (ENCLB555ARL)

description:
https://www.encodeproject.org/experiments/ENCSR000CUG/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from saphenous vein endothelial primary whole cells, HSaVEC isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUG
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ARL
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens vein endothelial primary cell male adult (52 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/374d14aa-89f4-4bf4-817d-0ae391a334f1/@@download/attachment/LID47261.pdf

value: vein endothelial cell

value: primary cell

value: Saphenous Vein Endothelial Cells (HSaVEC) from the thigh of a 52 year old caucasian male

value: 52 year

value: ENCBS467ENC at ENCODE; https://www.encodeproject.org/ENCBS467ENC/

value: Derived from ENCODE donor ENCDO149AAA; https://www.encodeproject.org/ENCDO149AAA/

value: ENCODE dbxrefs HSaVEC; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HSaVEC


title: total RNA-seq from fibroblast of dermis (ENCLB555ALE)

description:
https://www.encodeproject.org/experiments/ENCSR000CUH/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUH
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ALE
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens fibroblast of dermis primary cell female adult (55 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6a2280a9-a61d-40ae-a66b-ce2e1f43a04b/@@download/attachment/LID47248.pdf

value: fibroblast of dermis

value: Skin Fibroblasts (NHDF) from the temple dermal layer that were surgically resected from a 55 year old caucasian female.

value: 55 year

value: adult

value: female

value: ENCBS475ENC at ENCODE; https://www.encodeproject.org/ENCBS475ENC/

value: Derived from ENCODE donor ENCDO119AAA; https://www.encodeproject.org/ENCDO119AAA/

value: ENCODE dbxrefs NHDF_0060801.3; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=NHDF_0060801.3

value: ENCODE dbxrefs NHDF; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=NHDF


title: total RNA-seq from mammary epithelial cell (ENCLB555AOT)

description:
https://www.encodeproject.org/experiments/ENCSR000CUN/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from mammary epithelial primary whole cells, HMEpC. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUN
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AOT
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens mammary epithelial primary cell female adult (23 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/f3e8ca63-88a9-436a-83d7-51661fd606e5/@@download/attachment/LID47096.pdf

value: mammary epithelial cell

value: Mammary Epithelial Cells (HMEpC) from the mammary gland of a 23 year old caucasian female

value: 23 year

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: Thomas Gingeras, CSHL

value: ENCBS456ENC at ENCODE; https://www.encodeproject.org/ENCBS456ENC/

value: Derived from ENCODE donor ENCDO131AAA; https://www.encodeproject.org/ENCDO131AAA/

value: ENCODE dbxrefs HMEpC; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HMEpC


title: total RNA-seq from subcutaneous preadipocyte (ENCLB555AOS)

description:
https://www.encodeproject.org/experiments/ENCSR000CUM/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from subcutaneous white pre-adipocyte primary whole cells, HWP isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUM
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AOS
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens subcutaneous preadipocyte primary cell male adult (65 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/1fbcce53-b7e8-4f9c-ad94-b9731d9a8987/@@download/attachment/LID47255.pdf

value: subcutaneous preadipocyte

value: primary cell

value: White Preadipocytes (HWP) cells from the subcutaneous abdominal region of a 65 year old caucasian male

value: 65 year

value: male

value: ENCBS473ENC at ENCODE; https://www.encodeproject.org/ENCBS473ENC/

value: Derived from ENCODE donor ENCDO142AAA; https://www.encodeproject.org/ENCDO142AAA/

value: ENCODE dbxrefs HWP; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HWP

value: ENCODE dbxrefs HWP_0092205; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HWP_0092205

value: PromoCell sample source; http://www.promocell.com/nc/products/human-primary-cells/preadipocytes/?sword_list%5B%5D=HWP


title: total RNA-seq from osteoblast (ENCLB555ALS)

description:
https://www.encodeproject.org/experiments/ENCSR000CUF/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on human HOB whole cell long total RNA.The libraries contained in this experiment come from osteoblast primary whole cells, HOB  isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUF
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ALS
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens osteoblast primary cell female adult (56 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/2298cde4-1fb1-4847-baa5-3a707c46f449/@@download/attachment/LID47251.pdf

value: osteoblast

value: Osteoblasts (HOB) from femoral head cancellous bone that was surgically resected from a 56 year old caucasian female.

value: 56 year

value: adult

value: female

value: ENCBS464ENC at ENCODE; https://www.encodeproject.org/ENCBS464ENC/

value: Derived from ENCODE donor ENCDO124AAA; https://www.encodeproject.org/ENCDO124AAA/

value: ENCODE dbxrefs HOB; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HOB

value: ENCODE dbxrefs HOB_0091301; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HOB_0091301

value: PromoCell sample source; http://www.promocell.com/nc/products/human-primary-cells/osteoblasts/?sword_list%5B%5D=HOB


title: total RNA-seq from articular chondrocyte of knee joint (ENCLB555ASX)

description:
https://www.encodeproject.org/experiments/ENCSR000CUE/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from chondrocyte primary whole cells, HCH isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUE
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ASX
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens articular chondrocyte of knee joint primary cell male adult (64 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/e98b7d44-21f1-4bbb-affc-18f05c1e0c9a/@@download/attachment/LID47025.pdf

value: articular chondrocyte of knee joint

value: primary cell

value: Chondrocytes (HCH) from knee joint cartilage that were surgically resected from a 64 year old caucasian male.

value: 64 year

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: Thomas Gingeras, CSHL

value: ENCBS019ENC at ENCODE; https://www.encodeproject.org/ENCBS019ENC/

value: Derived from ENCODE donor ENCDO011AAA; https://www.encodeproject.org/ENCDO011AAA/

value: ENCODE dbxrefs HCH; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HCH

value: ENCODE dbxrefs HCH_8100808.2; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HCH_8100808.2

value: PromoCell sample source; http://www.promocell.com/nc/products/human-primary-cells/chondrocytes/


title: total RNA-seq from skeletal muscle satellite cell (ENCLB555ATT)

description:
https://www.encodeproject.org/experiments/ENCSR000CUI/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from skeletal muscle myosatellite cells isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUI
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ATT
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens skeletal muscle satellite primary cell female adult (64 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6edf5642-2d91-478a-966c-c600466693fc/@@download/attachment/LID47245.pdf

value: skeletal muscle satellite cell

value: Skeletal muscle myosatellite cells from the striated M. pectoralis muscle that were surgically resected from a 64 year old caucasian female.

value: adult

value: female

value: ENCBS481ENC at ENCODE; https://www.encodeproject.org/ENCBS481ENC/

value: Derived from ENCODE donor ENCDO118AAA; https://www.encodeproject.org/ENCDO118AAA/

value: ENCODE dbxrefs SkMC; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=SkMC

value: ENCODE dbxrefs SkMC_9011302; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=SkMC_9011302


title: total RNA-seq from hair follicle dermal papilla cell (ENCLB555ASG)

description:
https://www.encodeproject.org/experiments/ENCSR000CUB/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from hair follicle dermal papilla primary whole cells, HFDPC  isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUB
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ASG
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens hair follicle dermal papilla primary cell female adult (47 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/e2498941-45a5-488a-b0e5-9235bb7d2073/@@download/attachment/LID47095.pdf

value: hair follicle dermal papilla cell

value: primary cell

value: Follicle Dermal Papilla Cells (HFDPC) from the lateral scalp region of a 47 year old caucasian female with brown hair

value: 47 year

value: ENCBS454ENC at ENCODE; https://www.encodeproject.org/ENCBS454ENC/

value: Derived from ENCODE donor ENCDO129AAA; https://www.encodeproject.org/ENCDO129AAA/

value: ENCODE dbxrefs HFDPC_0100503.2; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HFDPC_0100503.2

value: ENCODE dbxrefs HFDPC; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HFDPC


title: total RNA-seq from pericyte cell (ENCLB555ALN)

description:
https://www.encodeproject.org/experiments/ENCSR000CTX/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CTX
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ALN
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens pericyte primary cell female newborn

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ecd4c7fb-6071-406d-94ae-06010cb53ffa/@@download/attachment/LID47301.pdf

value: pericyte cell

value: Pericytes (HPC-PL) from the placenta of a newborn caucasian female

value: unknown

value: newborn

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: Thomas Gingeras, CSHL

value: ENCBS491ENC at ENCODE; https://www.encodeproject.org/ENCBS491ENC/

value: Derived from ENCODE donor ENCDO139AAA; https://www.encodeproject.org/ENCDO139AAA/

value: ENCODE dbxrefs HPC-PL; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HPC-PL

value: PromoCell sample source; http://www.promocell.com/products/human-stem-and-blood-cells/pericytes/


title: total RNA-seq from hematopoietic multipotent progenitor cell (ENCLB555AOX)

description:
https://www.encodeproject.org/experiments/ENCSR000CUA/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from the whole cell fraction of independent isolates of mobilized CD34+ blood progenitor cells. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUA
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AOX
size range: >200
spikeins used: /references/ENCSR402QNO/

source_name: Homo sapiens hematopoietic multipotent progenitor primary cell male

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/161a66e6-6643-45dd-aa33-ae19be5951d5/@@download/attachment/LID45901.pdf

value: primary cell

value: hematopoietic progenitor cells- mobilized, from donor RO01679.

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS485ENC at ENCODE; https://www.encodeproject.org/ENCBS485ENC/

value: Derived from ENCODE donor ENCDO116AAA; https://www.encodeproject.org/ENCDO116AAA/

value: ENCODE dbxrefs CD34+_Mobilized; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=CD34+_Mobilized

value: Heimfeld sample source; http://labs.fhcrc.org/heimfeld/index.html


title: total RNA-seq from uterus (ENCLB211ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFN/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal uterus tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFN
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB211ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens uterus tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/460f80da-2e9f-4275-b592-69a36dc8f0f3/@@download/attachment/SID38170.pdf

value: uterus

value: tissue

value: Human fetal uterus

value: 24 week

value: fetal

value: female

value: ENCBS083RNA at ENCODE; https://www.encodeproject.org/ENCBS083RNA/

value: Derived from ENCODE donor ENCDO067AAA; https://www.encodeproject.org/ENCDO067AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244274-10


title: total RNA-seq from pericyte cell (ENCLB555ALM)

description:
https://www.encodeproject.org/experiments/ENCSR000CTX/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from placental pericytes primary whole cells, HPC-PL isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CTX
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555ALM
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens pericyte primary cell male newborn

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/851c270b-cfb9-42de-a9bd-056318f13c7a/@@download/attachment/LID47104.pdf

value: pericyte cell

value: primary cell

value: Pericytes (HPC-PL) from the placenta of a newborn caucasian male

value: unknown

value: newborn

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: Thomas Gingeras, CSHL

value: ENCBS490ENC at ENCODE; https://www.encodeproject.org/ENCBS490ENC/

value: Derived from ENCODE donor ENCDO138AAA; https://www.encodeproject.org/ENCDO138AAA/

value: ENCODE dbxrefs HPC-PL; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HPC-PL

value: PromoCell sample source; http://www.promocell.com/products/human-stem-and-blood-cells/pericytes/


title: total RNA-seq from camera-type eye (ENCLB214ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFO/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal whole eye tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFO
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB214ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens camera-type eye tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/9ab3f61d-fe3b-4269-9739-1df08ea2a410/@@download/attachment/SID38173.pdf

value: camera-type eye

value: tissue

value: Human fetal whole eye

value: 20 week

value: ENCBS086RNA at ENCODE; https://www.encodeproject.org/ENCBS086RNA/

value: Derived from ENCODE donor ENCDO064AAA; https://www.encodeproject.org/ENCDO064AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244108-10


title: total RNA-seq from camera-type eye (ENCLB213ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFO/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal whole eye tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFO
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB213ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens camera-type eye tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/fab93186-4e68-4eb7-9423-43071f409958/@@download/attachment/SID38172.pdf

value: 24 week

value: fetal

value: female

value: ENCBS085RNA at ENCODE; https://www.encodeproject.org/ENCBS085RNA/

value: Derived from ENCODE donor ENCDO067AAA; https://www.encodeproject.org/ENCDO067AAA/


title: total RNA-seq from uterus (ENCLB212ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFN/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal uterus tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFN
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB212ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens uterus tissue female fetal (28 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/66361142-7359-4367-a55f-d00cdba58c77/@@download/attachment/SID38171.pdf

value: uterus

value: Human fetal uterus

value: 28 week

value: Thomas Gingeras, CSHL

value: ENCBS084RNA at ENCODE; https://www.encodeproject.org/ENCBS084RNA/

value: Derived from ENCODE donor ENCDO062AAA; https://www.encodeproject.org/ENCDO062AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244274-10


title: total RNA-seq from umbilical cord (ENCLB209ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFM/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal umbilical cord tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFM
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB209ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens umbilical cord tissue male fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/9193c98c-8298-420d-a3bc-b0b0f903281e/@@download/attachment/SID38200.pdf

value: umbilical cord

value: tissue

value: Human fetal umbilical cord

value: male

value: ENCBS081RNA at ENCODE; https://www.encodeproject.org/ENCBS081RNA/

value: Derived from ENCODE donor ENCDO068AAA; https://www.encodeproject.org/ENCDO068AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244272-10


title: total RNA-seq from fibroblast of dermis (ENCLB555AMQ)

description:
https://www.encodeproject.org/experiments/ENCSR000CUH/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from skin fibroblasts primary whole cells, NHDF isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUH
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AMQ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens fibroblast of dermis primary cell female adult (44 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/342bd00a-96f2-4cc1-bdff-a16af27b524d/@@download/attachment/LID47247.pdf

value: fibroblast of dermis

value: primary cell

value: Skin Fibroblasts (NHDF) from the breast dermal layer that were surgically resected from a 44 year old caucasian female.

value: 44 year

value: adult

value: female

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS476ENC at ENCODE; https://www.encodeproject.org/ENCBS476ENC/

value: Derived from ENCODE donor ENCDO120AAA; https://www.encodeproject.org/ENCDO120AAA/

value: ENCODE dbxrefs NHDF_7071701.2; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=NHDF_7071701.2

value: ENCODE dbxrefs NHDF; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=NHDF


title: total RNA-seq from tongue (ENCLB207ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFL/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal tongue tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFL
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB207ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens tongue tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/28337440-aaac-4fcd-a9b9-e36f6ee29838/@@download/attachment/SID38198.pdf

value: tongue

value: tissue

value: Human fetal tongue

value: 20 week

value: fetal

value: Thomas Gingeras, CSHL

value: ENCBS079RNA at ENCODE; https://www.encodeproject.org/ENCBS079RNA/

value: Derived from ENCODE donor ENCDO064AAA; https://www.encodeproject.org/ENCDO064AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244267-50


title: total RNA-seq from umbilical cord (ENCLB210ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFM/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal umbilical cord tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFM
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB210ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens umbilical cord tissue male fetal (31 week)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/50d08c5d-f3b5-4ee6-ae60-b85bf0bc10f6/@@download/attachment/SID38201.pdf

value: umbilical cord

value: Human fetal umbilical cord

value: 31 week

value: male

value: ENCBS082RNA at ENCODE; https://www.encodeproject.org/ENCBS082RNA/

value: Derived from ENCODE donor ENCDO061AAA; https://www.encodeproject.org/ENCDO061AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244272-10


title: total RNA-seq from articular chondrocyte of knee joint (ENCLB555AXA)

description:
https://www.encodeproject.org/experiments/ENCSR000CUE/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from chondrocyte primary whole cells, HCH isolated from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000CUE
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2012-06-21
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AXA
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens articular chondrocyte of knee joint primary cell female adult (56 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/cf383b07-ece1-4c3c-9eee-c5e57649eeb6/@@download/attachment/LID47024.pdf

value: articular chondrocyte of knee joint

value: primary cell

value: Chondrocytes (HCH) from femoral head cartilage that were surgically resected from a 56 year old caucasian female.

value: 56 year

value: adult

value: female

value: negative for Bac/Fung/Myc, negative for HIV-1/HBV/HCV

value: ENCBS018ENC at ENCODE; https://www.encodeproject.org/ENCBS018ENC/

value: Derived from ENCODE donor ENCDO010AAA; https://www.encodeproject.org/ENCDO010AAA/

value: ENCODE dbxrefs HCH_0011308.2P; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HCH_0011308.2P

value: ENCODE dbxrefs HCH; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HCH

value: PromoCell sample source; http://www.promocell.com/nc/products/human-primary-cells/chondrocytes/


title: total RNA-seq from temporal lobe (ENCLB203ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFJ/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFJ
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB203ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens temporal lobe tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/86ed3640-00ed-4ec4-bc60-9edc597f90e6/@@download/attachment/SID38168.pdf

value: temporal lobe

value: tissue

value: Human fetal temporal lobe

value: 20 week

value: fetal

value: Thomas Gingeras, CSHL

value: ENCBS075RNA at ENCODE; https://www.encodeproject.org/ENCBS075RNA/

value: Derived from ENCODE donor ENCDO064AAA; https://www.encodeproject.org/ENCDO064AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244078-50


title: total RNA-seq from thyroid gland (ENCLB206ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFK/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal thyroid gland tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFK
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB206ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens thyroid gland tissue female fetal (40 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/bba18d31-cc3d-4ddf-b0bc-c9d487b1090e/@@download/attachment/SID38165.pdf

value: thyroid gland

value: Human fetal thyroid gland

value: 40 week

value: ENCBS078RNA at ENCODE; https://www.encodeproject.org/ENCBS078RNA/

value: Derived from ENCODE donor ENCDO066AAA; https://www.encodeproject.org/ENCDO066AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244265-10


title: total RNA-seq from tongue (ENCLB208ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFL/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal tongue tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFL
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB208ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens tongue tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/84beabae-382c-40e8-9f09-ad2377cdceda/@@download/attachment/SID38199.pdf

value: tongue

value: Human fetal tongue

value: 24 week

value: female

value: ENCBS080RNA at ENCODE; https://www.encodeproject.org/ENCBS080RNA/

value: Derived from ENCODE donor ENCDO067AAA; https://www.encodeproject.org/ENCDO067AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244267-50


title: total RNA-seq from thyroid gland (ENCLB205ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFK/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal thyroid gland tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFK
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB205ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens thyroid gland tissue female fetal (37 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/660a0c5c-7faa-4cd4-8738-b5004834f36a/@@download/attachment/SID38164.pdf

value: tissue

value: 37 week

value: fetal

value: Thomas Gingeras, CSHL

value: ENCBS077RNA at ENCODE; https://www.encodeproject.org/ENCBS077RNA/

value: Derived from ENCODE donor ENCDO063AAA; https://www.encodeproject.org/ENCDO063AAA/


title: total RNA-seq from stomach (ENCLB201ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFI/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal stomach tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFI
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB201ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens stomach tissue female fetal (40 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/276d28a2-fc8d-4bb9-b156-ed70a3de4da5/@@download/attachment/SID38166.pdf

value: stomach

value: Human fetal stomach

value: 40 week

value: ENCBS073RNA at ENCODE; https://www.encodeproject.org/ENCBS073RNA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244248-50


title: total RNA-seq from skeletal muscle tissue (ENCLB196ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFF/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFF
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB196ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens skeletal muscle tissue male fetal (22 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/17873038-dbb6-4b4d-a414-1386277ea017/@@download/attachment/SID38155.pdf

value: skeletal muscle tissue

value: Human fetal skeletal muscle Tissue

value: 22 week

value: male

value: unknown

value: ENCBS068RNA at ENCODE; https://www.encodeproject.org/ENCBS068RNA/

value: Derived from ENCODE donor ENCDO065AAA; https://www.encodeproject.org/ENCDO065AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244171-50


title: total RNA-seq from skin of body (ENCLB198ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFG/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal skin tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFG
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB198ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens skin of body tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/9da6bf88-4841-4583-a382-07ffb568f48d/@@download/attachment/SID38159.pdf

value: skin of body

value: tissue

value: Human fetal skin of body

value: 24 week

value: fetal

value: female

value: ENCBS070RNA at ENCODE; https://www.encodeproject.org/ENCBS070RNA/

value: Derived from ENCODE donor ENCDO067AAA; https://www.encodeproject.org/ENCDO067AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244218-50


title: total RNA-seq from temporal lobe (ENCLB204ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFJ/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal temporal lobe tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFJ
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB204ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens temporal lobe tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ee400efa-0f0d-4d87-a24d-1ab9fcd3408c/@@download/attachment/SID38169.pdf

value: temporal lobe

value: Human fetal temporal lobe

value: Thomas Gingeras, CSHL

value: ENCBS076RNA at ENCODE; https://www.encodeproject.org/ENCBS076RNA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244078-50


title: total RNA-seq from stomach (ENCLB202ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFI/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal stomach tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFI
assay title: total RNA-seq
assembly: hg19, GRCh38
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB202ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens stomach tissue male fetal (36 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/1bf20764-ee8d-4b99-8b5d-f3cbf9a730a9/@@download/attachment/SID38167.pdf

value: stomach

value: Human fetal stomach

value: 36 week

value: male

value: ENCBS074RNA at ENCODE; https://www.encodeproject.org/ENCBS074RNA/

value: Derived from ENCODE donor ENCDO071AAA; https://www.encodeproject.org/ENCDO071AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244248-50


title: total RNA-seq from skeletal muscle tissue (ENCLB195ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFF/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal skeletal muscle tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFF
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB195ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens skeletal muscle tissue female fetal (19 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/aeccd43a-7bf8-44e0-a88b-d40cde4fc376/@@download/attachment/SID38154.pdf

value: skeletal muscle tissue

value: tissue

value: Human fetal skeletal muscle Tissue

value: 19 week

value: fetal

value: ENCBS067RNA at ENCODE; https://www.encodeproject.org/ENCBS067RNA/

value: Derived from ENCODE donor ENCDO070AAA; https://www.encodeproject.org/ENCDO070AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244171-50


title: total RNA-seq from spinal cord (ENCLB200ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFH/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFH
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB200ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens spinal cord tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/3aa98cba-81d7-4cec-abd6-f31268ea69e1/@@download/attachment/SID38161.pdf

value: spinal cord

value: Human fetal spinal cord

value: 24 week

value: female

value: Thomas Gingeras, CSHL

value: ENCBS072RNA at ENCODE; https://www.encodeproject.org/ENCBS072RNA/

value: Derived from ENCODE donor ENCDO067AAA; https://www.encodeproject.org/ENCDO067AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244234-10


title: total RNA-seq from parietal lobe (ENCLB194ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFE/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFE
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB194ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens parietal lobe tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ea22017d-83e5-442d-b870-51d03b32cf8b/@@download/attachment/SID38163.pdf

value: parietal lobe

value: Human fetal parietal lobe

value: ENCBS066RNA at ENCODE; https://www.encodeproject.org/ENCBS066RNA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244066-50


title: total RNA-seq from parietal lobe (ENCLB193ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFE/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal parietal lobe tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFE
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB193ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens parietal lobe tissue male fetal (22 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/e20a236f-a048-4e47-a8c9-2a8afa29f0fa/@@download/attachment/SID38162.pdf

value: tissue

value: 22 week

value: male

value: unknown

value: ENCBS065RNA at ENCODE; https://www.encodeproject.org/ENCBS065RNA/

value: Derived from ENCODE donor ENCDO065AAA; https://www.encodeproject.org/ENCDO065AAA/


title: total RNA-seq from occipital lobe (ENCLB192ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFD/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFD
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB192ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens occipital lobe tissue male fetal (22 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/b03da8c4-85d0-4369-a5c8-b7918806de3f/@@download/attachment/SID38151.pdf

value: occipital lobe

value: Human fetal occipital lobe

value: fetal

value: ENCBS064RNA at ENCODE; https://www.encodeproject.org/ENCBS064RNA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244062-50


title: total RNA-seq from occipital lobe (ENCLB191ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFD/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal occipital lobe tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFD
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB191ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens occipital lobe tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/a0736f94-fb9e-4eb7-9e33-3033d5b393b1/@@download/attachment/SID38150.pdf

value: 20 week

value: female

value: Thomas Gingeras, CSHL

value: ENCBS063RNA at ENCODE; https://www.encodeproject.org/ENCBS063RNA/

value: Derived from ENCODE donor ENCDO064AAA; https://www.encodeproject.org/ENCDO064AAA/


title: total RNA-seq from skin of body (ENCLB197ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFG/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal skin tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFG
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB197ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens skin of body tissue male fetal (22 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/45496122-c35c-4496-a96d-903beff13d31/@@download/attachment/SID38158.pdf

value: skin of body

value: Human fetal skin of body

value: ENCBS069RNA at ENCODE; https://www.encodeproject.org/ENCBS069RNA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244218-50


title: total RNA-seq from lung (ENCLB190ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFC/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal lung tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFC
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB190ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens lung tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/355395aa-caef-4512-9af4-11e59e379bed/@@download/attachment/SID38149.pdf

value: lung

value: tissue

value: Human fetal lung

value: 24 week

value: ENCBS062RNA at ENCODE; https://www.encodeproject.org/ENCBS062RNA/

value: Derived from ENCODE donor ENCDO067AAA; https://www.encodeproject.org/ENCDO067AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244152-50


title: total RNA-seq from lung (ENCLB189ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFC/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal lung tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFC
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB189ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens lung tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/a785cfaa-974f-48b4-90f8-0ecf99105e42/@@download/attachment/SID38148.pdf

value: fetal

value: ENCBS061RNA at ENCODE; https://www.encodeproject.org/ENCBS061RNA/


title: total RNA-seq from metanephros (ENCLB186ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFA/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFA
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB186ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens metanephros tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/425248db-2fd4-450b-ade9-acc062723bcc/@@download/attachment/SID38141.pdf

value: metanephros

value: Human fetal kidney

value: female

value: ENCBS058RNA at ENCODE; https://www.encodeproject.org/ENCBS058RNA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244142-10


title: total RNA-seq from liver (ENCLB187ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFB/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFB
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB187ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens liver tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/66fd5643-0174-44bf-a9b7-0319aad8c76e/@@download/attachment/SID38142.pdf

value: liver

value: Human fetal liver

value: 20 week

value: Thomas Gingeras, CSHL

value: ENCBS059RNA at ENCODE; https://www.encodeproject.org/ENCBS059RNA/

value: Derived from ENCODE donor ENCDO064AAA; https://www.encodeproject.org/ENCDO064AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244149-50


title: total RNA-seq from liver (ENCLB188ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFB/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal liver tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFB
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB188ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens liver tissue male fetal (22 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/3c495873-a0d8-468d-a52a-e5d1587052b2/@@download/attachment/SID38143.pdf

value: tissue

value: 22 week

value: male

value: unknown

value: ENCBS060RNA at ENCODE; https://www.encodeproject.org/ENCBS060RNA/

value: Derived from ENCODE donor ENCDO065AAA; https://www.encodeproject.org/ENCDO065AAA/


title: total RNA-seq from frontal cortex (ENCLB181ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEY/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEY
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB181ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens frontal cortex tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/9a7743b2-1c9c-40da-92ac-e79a0e094d36/@@download/attachment/SID38147.pdf

value: frontal cortex

value: Human fetal frontal cortex

value: fetal

value: ENCBS053RNA at ENCODE; https://www.encodeproject.org/ENCBS053RNA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244051-50


title: total RNA-seq from metanephros (ENCLB185ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFA/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal kidney tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFA
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB185ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens metanephros tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/02596b53-dfe6-4f10-8bb6-9b622635308c/@@download/attachment/SID38140.pdf

value: metanephros

value: Human fetal kidney

value: female

value: ENCBS057RNA at ENCODE; https://www.encodeproject.org/ENCBS057RNA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244142-10


title: total RNA-seq from heart (ENCLB184ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEZ/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal heart tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEZ
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB184ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens heart tissue female fetal (19 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/abe1908b-acaa-4f9e-b68d-04b490614f04/@@download/attachment/SID38153.pdf

value: heart

value: Human fetal heart

value: 19 week

value: Thomas Gingeras, CSHL

value: ENCBS056RNA at ENCODE; https://www.encodeproject.org/ENCBS056RNA/

value: Derived from ENCODE donor ENCDO070AAA; https://www.encodeproject.org/ENCDO070AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244122-50


title: total RNA-seq from frontal cortex (ENCLB182ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEY/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal frontal cortex tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEY
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB182ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens frontal cortex tissue male fetal (22 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/f54a6631-661a-451b-8a57-0c625e1961cb/@@download/attachment/SID38146.pdf

value: frontal cortex

value: tissue

value: 22 week

value: male

value: unknown

value: ENCBS054RNA at ENCODE; https://www.encodeproject.org/ENCBS054RNA/

value: Derived from ENCODE donor ENCDO065AAA; https://www.encodeproject.org/ENCDO065AAA/


title: total RNA-seq from spinal cord (ENCLB199ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AFH/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal spinal cord tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AFH
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB199ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens spinal cord tissue male fetal (22 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/013f55d1-aa39-49a2-8d55-046e35d21a6a/@@download/attachment/SID38160.pdf

value: spinal cord

value: Human fetal spinal cord

value: fetal

value: ENCBS071RNA at ENCODE; https://www.encodeproject.org/ENCBS071RNA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244234-10


title: total RNA-seq from diencephalon (ENCLB179ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEX/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEX
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB179ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens diencephalon tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/7e716ef6-cef4-4281-83b7-a2bc3dfa4e76/@@download/attachment/SID38144.pdf

value: diencephalon

value: Human fetal diencephalon

value: 20 week

value: female

value: ENCBS051RNA at ENCODE; https://www.encodeproject.org/ENCBS051RNA/

value: Derived from ENCODE donor ENCDO064AAA; https://www.encodeproject.org/ENCDO064AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244049-10


title: total RNA-seq from diencephalon (ENCLB180ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEX/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal diencephalon tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEX
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB180ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens diencephalon tissue male fetal (22 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/a982b7ca-9d12-47ff-a709-0db025a590c8/@@download/attachment/SID38145.pdf

value: tissue

value: 22 week

value: Thomas Gingeras, CSHL

value: ENCBS052RNA at ENCODE; https://www.encodeproject.org/ENCBS052RNA/


title: total RNA-seq from cerebellum (ENCLB177ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEW/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal cerebellum tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEW
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB177ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens cerebellum tissue female fetal (37 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/7966a4d0-1651-469a-9217-50d8946218d8/@@download/attachment/SID38138.pdf

value: cerebellum

value: Human fetal cerebellum

value: 37 week

value: ENCBS049RNA at ENCODE; https://www.encodeproject.org/ENCBS049RNA/

value: Derived from ENCODE donor ENCDO063AAA; https://www.encodeproject.org/ENCDO063AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244039-50


title: total RNA-seq from urinary bladder (ENCLB176ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEV/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEV
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB176ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens urinary bladder tissue female fetal (24 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/841fc1dd-0d9b-41cd-801d-863cf02826f7/@@download/attachment/SID38137.pdf

value: urinary bladder

value: Human fetal urinary bladder

value: 24 week

value: fetal

value: ENCBS048RNA at ENCODE; https://www.encodeproject.org/ENCBS048RNA/

value: Derived from ENCODE donor ENCDO067AAA; https://www.encodeproject.org/ENCDO067AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244010-50


title: total RNA-seq from urinary bladder (ENCLB175ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEV/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal urinary bladder tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEV
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-07-07
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB175ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens urinary bladder tissue female fetal (20 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/da35a713-4237-493f-a83d-831a4f5cc028/@@download/attachment/SID38136.pdf

value: tissue

value: 20 week

value: female

value: ENCBS047RNA at ENCODE; https://www.encodeproject.org/ENCBS047RNA/

value: Derived from ENCODE donor ENCDO064AAA; https://www.encodeproject.org/ENCDO064AAA/


title: polyA mRNA RNA-seq from K562 (ENCLB064ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEQ/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation K562 Long Poly-A+ RNA-seq from Wold
experiment encode accession: ENCSR000AEQ
assay title: polyA mRNA RNA-seq
assembly: GRCh38
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB064ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/, /references/ENCSR013YHQ/
nucleic acid starting quantity: 100
nucleic acid starting quantity units: ng

source_name: Homo sapiens K562 immortalized cell line

extract_protocol:
extraction method: Ambion mirVana
extraction protocol: https://www.encodeproject.org/documents/428a184d-7fa1-4599-9d8d-749c2eba7edd/@@download/attachment/cms_055740.pdf, extraction protocol: https://www.encodeproject.org/documents/f0cc5a7f-96a5-4970-9f46-317cc8e2d6a4/@@download/attachment/cms_055423.pdf, extraction protocol: https://www.encodeproject.org/documents/e84de88e-4c31-4b2a-b6ac-96feb764b2d0/@@download/attachment/dynabeads_mrna_purification_man.pdf

tag: line

value: immortalized cell line

value: The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. ENCODE3 RNA-seq evaluation replicate 2.

value: 53 year

value: adult

value: chronic myelogenous leukemia (CML)

value: Brenton Graveley, UConn

value: ENCBS088RNA at ENCODE; https://www.encodeproject.org/ENCBS088RNA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: polyA mRNA RNA-seq from K562 (ENCLB063ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEQ/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation K562 Long Poly-A+ RNA-seq from Wold
experiment encode accession: ENCSR000AEQ
assay title: polyA mRNA RNA-seq
assembly: GRCh38
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB063ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/, /references/ENCSR013YHQ/
nucleic acid starting quantity: 100
nucleic acid starting quantity units: ng

value: The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. ENCODE3 RNA-seq evaluation replicate 1.

value: ENCBS087RNA at ENCODE; https://www.encodeproject.org/ENCBS087RNA/


title: total RNA-seq from K562 (ENCLB061ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEP/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation K562 Long Total RNA-seq from Wold
experiment encode accession: ENCSR000AEP
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB061ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/, /references/ENCSR013YHQ/

extract_protocol:
extraction method: Ambion mirVana
extraction protocol: https://www.encodeproject.org/documents/428a184d-7fa1-4599-9d8d-749c2eba7edd/@@download/attachment/cms_055740.pdf, extraction protocol: https://www.encodeproject.org/documents/f0cc5a7f-96a5-4970-9f46-317cc8e2d6a4/@@download/attachment/cms_055423.pdf


title: total RNA-seq from K562 (ENCLB062ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEP/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation K562 Long Total RNA-seq from Wold
experiment encode accession: ENCSR000AEP
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB062ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/, /references/ENCSR013YHQ/


title: total RNA-seq from liver (ENCLB173ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEU/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA-seq on human liver greater than 200bp rRNA depleted total RNA
experiment encode accession: ENCSR000AEU
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB173ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens liver tissue female child (6 years)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/03ebae78-9326-404f-a916-b50684c2316d/@@download/attachment/LID48880.pdf

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy 6 year old Caucasian female donor

value: 6 year

value: child

value: healthy

value: Thomas Gingeras, CSHL

value: ENCBS045RNA at ENCODE; https://www.encodeproject.org/ENCBS045RNA/

value: Derived from ENCODE donor ENCDO059AAA; https://www.encodeproject.org/ENCDO059AAA/

value: ENCODE dbxrefs Liver_STL004; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL004


title: total RNA-seq from heart (ENCLB183ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEZ/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal heart tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEZ
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB183ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens heart tissue female fetal (28 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/d7f8f9cc-6f43-43e3-abd0-a8b0090552e3/@@download/attachment/SID38152.pdf

value: heart

value: Human fetal heart

value: 28 week

value: fetal

value: female

value: ENCBS055RNA at ENCODE; https://www.encodeproject.org/ENCBS055RNA/

value: Derived from ENCODE donor ENCDO069AAA; https://www.encodeproject.org/ENCDO069AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244122-50


title: polyA mRNA RNA-seq from K562 (ENCLB056ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEM/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line K562.  They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.  These data were collected as part of the RNA Evaluation Study.
experiment encode accession: ENCSR000AEM
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB056ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/80e8d198-7890-4dce-8230-aafa833bb46f/@@download/attachment/K562_Long_PolyA_dUTP_2x101_ENCLB056ZZZ_Ging.pdf

value: immortalized cell line

value: The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. ENCODE3 RNA-seq evaluation replicate 2.

value: 53 year

value: adult

value: chronic myelogenous leukemia (CML)

value: Brenton Graveley, UConn

value: ENCBS088RNA at ENCODE; https://www.encodeproject.org/ENCBS088RNA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: polyA mRNA RNA-seq from K562 (ENCLB055ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEM/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line K562.  They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.  These data were collected as part of the RNA Evaluation Study.
experiment encode accession: ENCSR000AEM
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB055ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/afd5f7b9-9425-40b7-a9a5-0ef42a29ae83/@@download/attachment/K562_Long_PolyA_dUTP_2x101_ENCLB055ZZZ_Ging.pdf

value: The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. ENCODE3 RNA-seq evaluation replicate 1.

value: ENCBS087RNA at ENCODE; https://www.encodeproject.org/ENCBS087RNA/


title: total RNA-seq from K562 (ENCLB058ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEN/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation K562 Long Total from Graveley
experiment encode accession: ENCSR000AEN
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Brenton Graveley, UConn
library encode accession: ENCLB058ZZZ
size range: >200
spikeins used: /references/ENCSR449DXG/

extract_protocol:
extraction method: Trizol (LifeTech cat#: 15596-018)
data sheet: https://www.encodeproject.org/documents/75771109-b79e-43d5-9cc0-2dbf708a71f1/@@download/attachment/NIST-ERCC-Spikes.pdf, spike-in concentrations: https://www.encodeproject.org/documents/122fc48c-aec6-4113-9821-178a435a8646/@@download/attachment/NIST-ERCC-Pool15.tsv


title: total RNA-seq from K562 (ENCLB057ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEN/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation K562 Long Total from Graveley
experiment encode accession: ENCSR000AEN
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Brenton Graveley, UConn
library encode accession: ENCLB057ZZZ
size range: >200
spikeins used: /references/ENCSR449DXG/


title: polyA mRNA RNA-seq from K562 (ENCLB059ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEO/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation K562 Long Poly-A+  from Graveley
experiment encode accession: ENCSR000AEO
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Brenton Graveley, UConn
library encode accession: ENCLB059ZZZ
size range: >200
spikeins used: /references/ENCSR449DXG/


title: polyA mRNA RNA-seq from GM12878 (ENCLB045ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEH/
***************
biological replicate number: 1
technical replicate number: 1
description: RNA Evaluation Gm12878 Long Poly-A+ RNA-seq from Wold
experiment encode accession: ENCSR000AEH
assay title: polyA mRNA RNA-seq
assembly: GRCh38
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB045ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/, /references/ENCSR013YHQ/
nucleic acid starting quantity: 100
nucleic acid starting quantity units: ng

source_name: Homo sapiens GM12878 immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: Ali Mortazavi, UCI

value: ENCBS089RNA at ENCODE; https://www.encodeproject.org/ENCBS089RNA/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: total RNA-seq from cerebellum (ENCLB178ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEW/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from human fetal cerebellum tissue from independent donors. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000AEW
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB178ZZZ
size range: >200
spikeins used: /references/ENCSR470JZL/

source_name: Homo sapiens cerebellum tissue female fetal (19 weeks)

extract_protocol:
data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/26999e6f-807f-49aa-9018-d0be2e3306a1/@@download/attachment/SID38139.pdf

value: cerebellum

value: tissue

value: Human fetal cerebellum

value: 19 week

value: fetal

value: female

value: Thomas Gingeras, CSHL

value: ENCBS050RNA at ENCODE; https://www.encodeproject.org/ENCBS050RNA/

value: Derived from ENCODE donor ENCDO070AAA; https://www.encodeproject.org/ENCDO070AAA/

value: BioChain sample source; http://www.biochain.com/index.php/catalogsearch/advanced/result/?catalog_number=R1244039-50


title: polyA mRNA RNA-seq from GM12878 (ENCLB046ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEH/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation Gm12878 Long Poly-A+ RNA-seq from Wold
experiment encode accession: ENCSR000AEH
assay title: polyA mRNA RNA-seq
assembly: GRCh38
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB046ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/, /references/ENCSR013YHQ/
nucleic acid starting quantity: 100
nucleic acid starting quantity units: ng

value: immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: adult

value: ENCBS090RNA at ENCODE; https://www.encodeproject.org/ENCBS090RNA/


title: total RNA-seq from K562 (ENCLB054ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEL/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line K562.  They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.  These data were collected as part of the RNA Evaluation Study.
experiment encode accession: ENCSR000AEL
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB054ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

extract_protocol:
extraction method: see document
data sheet: https://www.encodeproject.org/documents/7ae25f97-ab0a-448b-b345-cfffd6368c90/@@download/attachment/AmbionMix1Concentrations.tsv, general protocol: https://www.encodeproject.org/documents/61cfc189-6972-4e0d-8afd-99af951ca07a/@@download/attachment/K562_Long_Total_dUTP_2x101_ENCLB054ZZZ_Ging.pdf, data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf

value: The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. ENCODE3 RNA-seq evaluation replicate 2.

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Brenton Graveley, UConn

value: ENCBS088RNA at ENCODE; https://www.encodeproject.org/ENCBS088RNA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: polyA mRNA RNA-seq from K562 (ENCLB060ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEO/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation K562 Long Poly-A+  from Graveley
experiment encode accession: ENCSR000AEO
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Brenton Graveley, UConn
library encode accession: ENCLB060ZZZ
size range: >200
spikeins used: /references/ENCSR449DXG/

value: female


title: total RNA-seq from K562 (ENCLB053ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEL/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line K562.  They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA > 200 nucleotides in size.  These data were collected as part of the RNA Evaluation Study.
experiment encode accession: ENCSR000AEL
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB053ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

extract_protocol:
extraction method: see document
data sheet: https://www.encodeproject.org/documents/7ae25f97-ab0a-448b-b345-cfffd6368c90/@@download/attachment/AmbionMix1Concentrations.tsv, general protocol: https://www.encodeproject.org/documents/c29d2416-adcc-4747-8eef-92a97661ecb8/@@download/attachment/K562_Long_Total_dUTP_2x101_ENCLB053ZZZ_Ging.pdf, data sheet: https://www.encodeproject.org/documents/28fef8e0-e171-450d-b66d-e3d199531cf2/@@download/attachment/Ambion-ERCC-Mix1.pdf

value: The continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. ENCODE3 RNA-seq evaluation replicate 1.

value: ENCBS087RNA at ENCODE; https://www.encodeproject.org/ENCBS087RNA/


title: total RNA-seq from GM12878 (ENCLB044ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEG/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation Gm12878 Long Total RNA-seq from Wold
experiment encode accession: ENCSR000AEG
assay title: total RNA-seq
assembly: GRCh38
encode release date: 2014-07-07
lab: Barbara Wold, Caltech
library encode accession: ENCLB044ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/, /references/ENCSR013YHQ/

value: unknown

value: Ali Mortazavi, UCI

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: total RNA-seq from GM12878 (ENCLB040ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEE/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation Gm12878 Long Total from Graveley
experiment encode accession: ENCSR000AEE
assay title: total RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Brenton Graveley, UConn
library encode accession: ENCLB040ZZZ
size range: >200
spikeins used: /references/ENCSR449DXG/

value: immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: adult

value: ENCBS090RNA at ENCODE; https://www.encodeproject.org/ENCBS090RNA/


title: polyA mRNA RNA-seq from GM12878 (ENCLB042ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AEF/
***************
biological replicate number: 2
technical replicate number: 1
description: RNA Evaluation Gm12878 Long Poly-A+  from Graveley
experiment encode accession: ENCSR000AEF
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Brenton Graveley, UConn
library encode accession: ENCLB042ZZZ
size range: >200
spikeins used: /references/ENCSR449DXG/


title: polyA mRNA RNA-seq from GM12878 (ENCLB037ZZZ)

description:
https://www.encodeproject.org/experiments/ENCSR000AED/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from independent growths of cell line GM12878.  They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.  These data were collected as part of the RNA Evaluation Study.
experiment encode accession: ENCSR000AED
assay title: polyA mRNA RNA-seq
assembly: GRCh38, hg19
encode release date: 2014-06-30
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB037ZZZ
size range: >200
spikeins used: /references/ENCSR156CIL/

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/f680c379-9abe-4d5b-a66a-3eed1545c4e3/@@download/attachment/GM12878_Long_PolyA_dUTP_2x101_ENCLB037ZZZ_Ging.pdf

value: ENCBS089RNA at ENCODE; https://www.encodeproject.org/ENCBS089RNA/