title: WGBS from liver (ENCLB852JKZ)

description:
https://www.encodeproject.org/experiments/ENCSR334GBD/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR334GBD
assay title: WGBS
assembly: mm10
encode release date: 2016-03-14
lab: Joe Ecker, Salk
library encode accession: ENCLB852JKZ
size range: 180-500

value: liver

value: embryonic

value: Len Pennacchio, LBNL


title: ChIP-seq from forebrain (ENCLB743WIH)

status: Public on Jun 22 2016

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR782SUW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR782SUW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB743WIH
size range: 300-500

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Mus musculus

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days)

tag: antibody

value: forebrain

value: tissue

tag: description

value: Forebrain from 120 embryonic 12.5 day mice

tag: biosample encode accession

tag: age

tag: dev stage

tag: Sex

value: pooled male and female

tag: health state

value: healthy

tag: lab

tag: link

value: ENCBS974GPH at ENCODE; https://www.encodeproject.org/ENCBS974GPH/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from heart (ENCLB527RJR)

description:
https://www.encodeproject.org/experiments/ENCSR840QFC/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR840QFC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB527RJR
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (12.5 days)

value: heart

value: Heart from 12.5 day mice

value: ENCBS452TDN at ENCODE; https://www.encodeproject.org/ENCBS452TDN/


title: ChIP-seq from limb (ENCLB470EGB)

description:
https://www.encodeproject.org/experiments/ENCSR333QJO/
***************
biological replicate number: 2
technical replicate number: 1,3,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse limb
experiment encode accession: ENCSR333QJO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR232EOO
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB470EGB
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap limb tissue mixed sex embryo (14.5 days)

value: limb

value: Limb from 34 embryonic 14.5 day mice

value: ENCBS023AAA at ENCODE; https://www.encodeproject.org/ENCBS023AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: microRNA-seq from liver (ENCLB648DDU)

description:
https://www.encodeproject.org/experiments/ENCSR246FZV/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR246FZV
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB648DDU
size range: <30

library_source: transcriptomic

molecule: total RNA

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days)

value: liver

value: Liver from 78 embryonic 15.5 day mice

value: ENCBS734ENZ at ENCODE; https://www.encodeproject.org/ENCBS734ENZ/


title: ChIP-seq from liver (ENCLB319SKH)

description:
https://www.encodeproject.org/experiments/ENCSR770OXU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR770OXU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB319SKH
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (12.5 days)

value: Liver from 88 embryonic 12.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS479VPX at ENCODE; https://www.encodeproject.org/ENCBS479VPX/


title: ChIP-seq from limb (ENCLB937YCS)

description:
https://www.encodeproject.org/experiments/ENCSR333QJO/
***************
biological replicate number: 1
technical replicate number: 1,3,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse limb
experiment encode accession: ENCSR333QJO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR232EOO
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB937YCS
size range: 300-500

value: tissue

value: Limb from 24 embryonic 14.5 day mice

value: pooled male and female

value: healthy

value: ENCBS011AAA at ENCODE; https://www.encodeproject.org/ENCBS011AAA/


title: microRNA-seq from heart (ENCLB766DJC)

description:
https://www.encodeproject.org/experiments/ENCSR246CIO/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse heart
experiment encode accession: ENCSR246CIO
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB766DJC
size range: <30

source_name: Mus musculus strain B6NCrl heart tissue postnatal (0 days)

value: heart

value: single heart from pup3 pregnant 1

value: 0 day

value: postnatal

value: not collected

value: Barbara Wold, Caltech

value: ENCBS694SYF at ENCODE; https://www.encodeproject.org/ENCBS694SYF/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: microRNA-seq from heart (ENCLB884TJV)

description:
https://www.encodeproject.org/experiments/ENCSR246CIO/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse heart
experiment encode accession: ENCSR246CIO
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB884TJV
size range: <30

value: single heart from pup2 pregnant 1

value: ENCBS337KCK at ENCODE; https://www.encodeproject.org/ENCBS337KCK/


title: ChIP-seq from liver (ENCLB807MJQ)

description:
https://www.encodeproject.org/experiments/ENCSR770OXU/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR770OXU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB807MJQ
size range: 300-500

value: liver

value: Liver from 120 embryonic 12.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS236ISK at ENCODE; https://www.encodeproject.org/ENCBS236ISK/


title: WGBS from liver (ENCLB576UBZ)

description:
https://www.encodeproject.org/experiments/ENCSR324NAF/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR324NAF
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB576UBZ
size range: 180-500

value: tissue

value: Liver from 62 embryonic 15.5 day mice

value: pooled male and female

value: healthy

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/


title: ChIP-seq from midbrain (ENCLB259DQN)

description:
https://www.encodeproject.org/experiments/ENCSR765UOU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR765UOU
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-05-06
lab: Bing Ren, UCSD
library encode accession: ENCLB259DQN
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days)

value: midbrain

value: Midbrain from 120 embryonic 12.5 day mice

value: ENCBS309WCU at ENCODE; https://www.encodeproject.org/ENCBS309WCU/


title: ChIP-seq from forebrain (ENCLB359JKW)

description:
https://www.encodeproject.org/experiments/ENCSR244YQD/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR244YQD
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB359JKW
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days)

value: Control

value: forebrain

value: Forebrain from 34 embryonic 14.5 day mice

value: ENCBS014AAA at ENCODE; https://www.encodeproject.org/ENCBS014AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from liver (ENCLB731OQN)

description:
https://www.encodeproject.org/experiments/ENCSR324NAF/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR324NAF
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB731OQN
size range: 180-500

value: liver

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from limb (ENCLB065MPQ)

description:
https://www.encodeproject.org/experiments/ENCSR244ASF/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 15.5 day mouse limb
experiment encode accession: ENCSR244ASF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR070OXL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB065MPQ
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (15.5 days)

value: limb

value: Limb from 62 embryonic 15.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS696JKV at ENCODE; https://www.encodeproject.org/ENCBS696JKV/


title: ChIP-seq from midbrain (ENCLB686XGP)

description:
https://www.encodeproject.org/experiments/ENCSR764UIE/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR764UIE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB686XGP
size range: 300-500

value: tissue

value: Midbrain from 88 embryonic 12.5 day mice

value: pooled male and female

value: healthy

value: ENCBS280TPA at ENCODE; https://www.encodeproject.org/ENCBS280TPA/


title: ChIP-seq from hindbrain (ENCLB880HFS)

description:
https://www.encodeproject.org/experiments/ENCSR323NOC/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR323NOC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB880HFS
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days)

value: hindbrain

value: Hindbrain from 88 embyronic 11.5 day mice

value: ENCBS976DPO at ENCODE; https://www.encodeproject.org/ENCBS976DPO/


title: WGBS from liver (ENCLB220IVH)

description:
https://www.encodeproject.org/experiments/ENCSR324NAF/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR324NAF
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB220IVH
size range: 180-500

value: Liver from 78 embryonic 15.5 day mice

value: ENCBS734ENZ at ENCODE; https://www.encodeproject.org/ENCBS734ENZ/


title: ChIP-seq from limb (ENCLB994VBS)

description:
https://www.encodeproject.org/experiments/ENCSR751AAB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR751AAB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB994VBS
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (12.5 days)

value: Limb from 88 embryonic 12.5 day mice

value: ENCBS731DGJ at ENCODE; https://www.encodeproject.org/ENCBS731DGJ/


title: microRNA-seq from skeletal muscle tissue (ENCLB265MYO)

description:
https://www.encodeproject.org/experiments/ENCSR242CPC/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse skeletal muscle
experiment encode accession: ENCSR242CPC
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB265MYO
size range: <30

source_name: Mus musculus strain B6NCrl skeletal muscle tissue postnatal (0 days)

value: skeletal muscle tissue

value: 1 skeletal muscle from pup1 pregnant 1

value: 0 day

value: postnatal

value: not collected

value: Barbara Wold, Caltech

value: ENCBS186LJI at ENCODE; https://www.encodeproject.org/ENCBS186LJI/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: microRNA-seq from skeletal muscle tissue (ENCLB759EFM)

description:
https://www.encodeproject.org/experiments/ENCSR242CPC/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse skeletal muscle
experiment encode accession: ENCSR242CPC
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB759EFM
size range: <30

value: tissue

value: 1 skeletal muscle from pup2 pregnant 1

value: ENCBS098FMC at ENCODE; https://www.encodeproject.org/ENCBS098FMC/


title: ChIP-seq from lung (ENCLB360GAQ)

description:
https://www.encodeproject.org/experiments/ENCSR241RIG/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on postnatal 0 day mouse lung
experiment encode accession: ENCSR241RIG
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB360GAQ
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex postnatal (0 days)

value: Control

value: lung

value: Lung from pooled postnatal 0 day mice

value: pooled male and female

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS558AAA at ENCODE; https://www.encodeproject.org/ENCBS558AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from embryonic facial prominence (ENCLB741GJS)

description:
https://www.encodeproject.org/experiments/ENCSR742ZUI/
***************
biological replicate number: 1
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR742ZUI
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB741GJS
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (13.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from embryonic 13.5 day mice

value: embryonic

value: ENCBS764ZZN at ENCODE; https://www.encodeproject.org/ENCBS764ZZN/


title: ChIP-seq from midbrain (ENCLB019ICJ)

description:
https://www.encodeproject.org/experiments/ENCSR322XHD/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on postnatal 0 day mouse midbrain
experiment encode accession: ENCSR322XHD
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR889XXJ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB019ICJ
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex postnatal (0 days)

value: midbrain

value: Midbrain from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: ENCBS039AAA at ENCODE; https://www.encodeproject.org/ENCBS039AAA/


title: ChIP-seq from limb (ENCLB788PNW)

description:
https://www.encodeproject.org/experiments/ENCSR244ASF/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 15.5 day mouse limb
experiment encode accession: ENCSR244ASF
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR070OXL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB788PNW
size range: 300-500

value: limb

value: tissue

value: Limb from 78 embryonic 15.5 day mice

value: ENCBS735QNY at ENCODE; https://www.encodeproject.org/ENCBS735QNY/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from liver (ENCLB298RHH)

description:
https://www.encodeproject.org/experiments/ENCSR324NAF/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR324NAF
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB298RHH
size range: 180-500

value: liver

value: Liver from 78 embryonic 15.5 day mice

value: pooled male and female

value: healthy

value: Len Pennacchio, LBNL

value: ENCBS734ENZ at ENCODE; https://www.encodeproject.org/ENCBS734ENZ/


title: ChIP-seq from midbrain (ENCLB538SYA)

description:
https://www.encodeproject.org/experiments/ENCSR764UIE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR764UIE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB538SYA
size range: 300-500

value: Midbrain from 120 embryonic 12.5 day mice

value: embryonic

value: ENCBS309WCU at ENCODE; https://www.encodeproject.org/ENCBS309WCU/


title: ChIP-seq from stomach (ENCLB094ZNH)

description:
https://www.encodeproject.org/experiments/ENCSR240XQT/
***************
biological replicate number: 2
technical replicate number: 2,1,3
description: Control ChIP-seq on embryonic 15.5 day mouse stomach
experiment encode accession: ENCSR240XQT
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB094ZNH
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

source_name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (15.5 days)

value: Control

value: stomach

value: Stomach from 62 embryonic 15.5 day mice

value: ENCBS355TAQ at ENCODE; https://www.encodeproject.org/ENCBS355TAQ/


title: ChIP-seq from stomach (ENCLB986MPX)

description:
https://www.encodeproject.org/experiments/ENCSR240XQT/
***************
biological replicate number: 1
technical replicate number: 1,3,2
description: Control ChIP-seq on embryonic 15.5 day mouse stomach
experiment encode accession: ENCSR240XQT
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB986MPX
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 4000

value: tissue

value: Stomach from 78 embryonic 15.5 day mice

value: ENCBS915SZN at ENCODE; https://www.encodeproject.org/ENCBS915SZN/


title: ChIP-seq from embryonic facial prominence (ENCLB230YMU)

description:
https://www.encodeproject.org/experiments/ENCSR742ZUI/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 13.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR742ZUI
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB230YMU
size range: 300-500

value: embryonic facial prominence

value: Embryonic facial prominence from embryonic 13.5 day mice

value: ENCBS847MIW at ENCODE; https://www.encodeproject.org/ENCBS847MIW/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from embryonic facial prominence (ENCLB521ELW)

description:
https://www.encodeproject.org/experiments/ENCSR320CCJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR320CCJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR068AQC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB521ELW
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (11.5 days)

value: Craniofacial prominence from 109 embyronic 11.5 day mice

value: pooled male and female

value: healthy

value: ENCBS141GPQ at ENCODE; https://www.encodeproject.org/ENCBS141GPQ/


title: ChIP-seq from limb (ENCLB148LJO)

description:
https://www.encodeproject.org/experiments/ENCSR751AAB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR751AAB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB148LJO
size range: 300-500

value: limb

value: Limb from 68 embryonic 12.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS313XRY at ENCODE; https://www.encodeproject.org/ENCBS313XRY/


title: ChIP-seq from heart (ENCLB777UAK)

description:
https://www.encodeproject.org/experiments/ENCSR317ENO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 11.5 day mouse heart
experiment encode accession: ENCSR317ENO
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB777UAK
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (11.5 days)

value: Control

value: heart

value: Heart from embryonic 11.5 day mice

value: ENCBS046IMM at ENCODE; https://www.encodeproject.org/ENCBS046IMM/


title: ChIP-seq from neural tube (ENCLB509RCT)

description:
https://www.encodeproject.org/experiments/ENCSR241BSK/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR241BSK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR351BDM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB509RCT
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (15.5 days)

value: neural tube

value: tissue

value: Neural tube from 78 embryonic 15.5 day mice

value: ENCBS944KEZ at ENCODE; https://www.encodeproject.org/ENCBS944KEZ/


title: ChIP-seq from midbrain (ENCLB984DFU)

description:
https://www.encodeproject.org/experiments/ENCSR707DZS/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR707DZS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB984DFU
size range: 300-500

value: midbrain

value: Midbrain from 88 embryonic 12.5 day mice

value: ENCBS280TPA at ENCODE; https://www.encodeproject.org/ENCBS280TPA/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from neural tube (ENCLB828KAZ)

description:
https://www.encodeproject.org/experiments/ENCSR241BSK/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR241BSK
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR351BDM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB828KAZ
size range: 300-500

value: Neural tube from 62 embryonic 15.5 day mice

value: pooled male and female

value: healthy

value: ENCBS206NRE at ENCODE; https://www.encodeproject.org/ENCBS206NRE/


title: ChIP-seq from heart (ENCLB989AUU)

description:
https://www.encodeproject.org/experiments/ENCSR317ENO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 11.5 day mouse heart
experiment encode accession: ENCSR317ENO
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB989AUU
size range: 300-500

value: Heart from 109 embyronic 11.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS225RIF at ENCODE; https://www.encodeproject.org/ENCBS225RIF/


title: ChIP-seq from midbrain (ENCLB411IWB)

description:
https://www.encodeproject.org/experiments/ENCSR311TLE/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR311TLE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB411IWB
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (11.5 days)

value: Midbrain of 109 embyronic 11.5 day mice

value: ENCBS228OBS at ENCODE; https://www.encodeproject.org/ENCBS228OBS/


title: ChIP-seq from limb (ENCLB245FDI)

description:
https://www.encodeproject.org/experiments/ENCSR737QWV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR737QWV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB245FDI
size range: 300-500

value: limb

value: tissue

value: Limb from 88 embryonic 12.5 day mice

value: ENCBS731DGJ at ENCODE; https://www.encodeproject.org/ENCBS731DGJ/


title: ChIP-seq from forebrain (ENCLB288QVG)

description:
https://www.encodeproject.org/experiments/ENCSR782SUW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR782SUW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB288QVG
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days)

value: forebrain

value: Forebrain from 68 embryonic 12.5 day mice

value: ENCBS617DPG at ENCODE; https://www.encodeproject.org/ENCBS617DPG/


title: ChIP-seq from heart (ENCLB270DOI)

description:
https://www.encodeproject.org/experiments/ENCSR688ZOR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR688ZOR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB270DOI
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (12.5 days)

value: heart

value: Heart from 12.5 day mice

value: ENCBS452TDN at ENCODE; https://www.encodeproject.org/ENCBS452TDN/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from hindbrain (ENCLB475VHQ)

description:
https://www.encodeproject.org/experiments/ENCSR323NOC/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR323NOC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB475VHQ
size range: 300-500

value: hindbrain

value: Hindbrain from 109 embyronic 11.5 day mice

value: pooled male and female

value: healthy

value: ENCBS199NDR at ENCODE; https://www.encodeproject.org/ENCBS199NDR/


title: ChIP-seq from embryonic facial prominence (ENCLB171YPQ)

description:
https://www.encodeproject.org/experiments/ENCSR320CCJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR320CCJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR068AQC
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB171YPQ
size range: 300-500

value: embryonic facial prominence

value: Craniofacial prominence from 88 embyronic 11.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS468NAL at ENCODE; https://www.encodeproject.org/ENCBS468NAL/


title: ChIP-seq from lung (ENCLB742BRT)

description:
https://www.encodeproject.org/experiments/ENCSR311LZM/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR311LZM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR280SYC
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB742BRT
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex embryo (14.5 days)

value: lung

value: tissue

value: Lung from 24 embryonic 14.5 day mice

value: ENCBS006AAA at ENCODE; https://www.encodeproject.org/ENCBS006AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from midbrain (ENCLB615IGJ)

description:
https://www.encodeproject.org/experiments/ENCSR707DZS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR707DZS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB615IGJ
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days)

value: midbrain

value: Midbrain from 120 embryonic 12.5 day mice

value: ENCBS309WCU at ENCODE; https://www.encodeproject.org/ENCBS309WCU/


title: microRNA-seq from forebrain (ENCLB671UKP)

description:
https://www.encodeproject.org/experiments/ENCSR240IDR/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq  on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR240IDR
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-01-06
lab: Ali Mortazavi, UCI
library encode accession: ENCLB671UKP
size range: <30

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (11.5 days)

value: forebrain

value: Forebrain from 88 embyronic 11.5 day mice

value: ENCBS720JOH at ENCODE; https://www.encodeproject.org/ENCBS720JOH/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: microRNA-seq from forebrain (ENCLB724ILT)

description:
https://www.encodeproject.org/experiments/ENCSR240IDR/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq  on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR240IDR
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-01-06
lab: Ali Mortazavi, UCI
library encode accession: ENCLB724ILT
size range: <30

value: Forebrain from 109 embyronic 11.5 day mice

value: pooled male and female

value: healthy

value: ENCBS745VOM at ENCODE; https://www.encodeproject.org/ENCBS745VOM/


title: microRNA-seq from neural tube (ENCLB263QTM)

description:
https://www.encodeproject.org/experiments/ENCSR236BQO/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse neural tube
experiment encode accession: ENCSR236BQO
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-02-02
lab: Ali Mortazavi, UCI
library encode accession: ENCLB263QTM
size range: <30

source_name: Mus musculus strain B6NCrl neural tube tissue postnatal (0 days)

value: neural tube

value: single neural tube from pup 1 pregnant 1

value: 0 day

value: postnatal

value: not collected

value: Barbara Wold, Caltech

value: ENCBS310ESD at ENCODE; https://www.encodeproject.org/ENCBS310ESD/


title: ChIP-seq from lung (ENCLB634XGK)

description:
https://www.encodeproject.org/experiments/ENCSR311LZM/
***************
biological replicate number: 2
technical replicate number: 1,3,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse lung
experiment encode accession: ENCSR311LZM
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR280SYC
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB634XGK
size range: 300-500

value: lung

value: tissue

value: Lung from 34 embryonic 14.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS018AAA at ENCODE; https://www.encodeproject.org/ENCBS018AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from heart (ENCLB271PWA)

description:
https://www.encodeproject.org/experiments/ENCSR688ZOR/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR688ZOR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB271PWA
size range: 300-500

value: heart

value: pooled male and female

value: ENCBS004ZLN at ENCODE; https://www.encodeproject.org/ENCBS004ZLN/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from liver (ENCLB026LJC)

description:
https://www.encodeproject.org/experiments/ENCSR680ZSE/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR680ZSE
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB026LJC
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (12.5 days)

value: Control

value: liver

value: Liver from 88 embryonic 12.5 day mice

value: healthy

value: ENCBS479VPX at ENCODE; https://www.encodeproject.org/ENCBS479VPX/


title: microRNA-seq from neural tube (ENCLB332DBP)

description:
https://www.encodeproject.org/experiments/ENCSR236BQO/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq  on postnatal 0 day mouse neural tube
experiment encode accession: ENCSR236BQO
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-02-02
lab: Ali Mortazavi, UCI
library encode accession: ENCLB332DBP
size range: <30

value: neural tube

value: single neural tube from pup 2 pregnant 1

value: 0 day

value: postnatal

value: not collected

value: Barbara Wold, Caltech

value: ENCBS897LGY at ENCODE; https://www.encodeproject.org/ENCBS897LGY/


title: ChIP-seq from hindbrain (ENCLB238KEC)

description:
https://www.encodeproject.org/experiments/ENCSR299NCJ/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 11.5 day mouse hindbrain
experiment encode accession: ENCSR299NCJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR563WKD
encode release date: 2016-02-18
lab: Bing Ren, UCSD
library encode accession: ENCLB238KEC
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days)

value: hindbrain

value: tissue

value: Hindbrain from 109 embyronic 11.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS199NDR at ENCODE; https://www.encodeproject.org/ENCBS199NDR/


title: WGBS from stomach (ENCLB553DHX)

description:
https://www.encodeproject.org/experiments/ENCSR286OOJ/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse stomach
experiment encode accession: ENCSR286OOJ
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB553DHX
size range: 180-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex postnatal (0 days)

extract_protocol:
general protocol: https://www.encodeproject.org/documents/665c8f16-3724-4ab7-aa29-688f396bcd4f/@@download/attachment/Ecker_Protocol_Summary.png
general protocol: https://www.encodeproject.org/documents/862389c9-38b6-4e76-8b84-d82fb9a4c6cf/@@download/attachment/Ecker_Replication_Summary.png
extraction method: Qiagen DNeasy Blood and Tissue Kit
general protocol: https://www.encodeproject.org/documents/9d5f346e-88d3-45e2-b28a-2b26f537490f/@@download/attachment/Ecker_Methyl_protocol_v030114.pdf

value: stomach

value: Stomach from 15 postnatal 0 day mice

value: pooled male and female

value: ENCBS045AAA at ENCODE; https://www.encodeproject.org/ENCBS045AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from kidney (ENCLB405ARJ)

description:
https://www.encodeproject.org/experiments/ENCSR288OHO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on postnatal 0 day mouse kidney
experiment encode accession: ENCSR288OHO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR178MLS
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB405ARJ
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex postnatal (0 days)

value: kidney

value: Kidney from 15 postnatal 0 day mice

value: healthy

value: ENCBS046AAA at ENCODE; https://www.encodeproject.org/ENCBS046AAA/


title: ChIP-seq from hindbrain (ENCLB353NCD)

description:
https://www.encodeproject.org/experiments/ENCSR659EZI/
***************
biological replicate number: 2
technical replicate number: 2,3,1
description: Control ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR659EZI
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB353NCD
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days)

value: Control

value: Hindbrain from 88 embryonic 12.5 day mice

value: ENCBS022IBY at ENCODE; https://www.encodeproject.org/ENCBS022IBY/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from hindbrain (ENCLB871ISY)

description:
https://www.encodeproject.org/experiments/ENCSR234YTN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR234YTN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR896PWV
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB871ISY
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex embryo (14.5 days)

value: hindbrain

value: tissue

value: Hindbrain from 24 embryonic 14.5 day mice

value: ENCBS004AAA at ENCODE; https://www.encodeproject.org/ENCBS004AAA/


title: ChIP-seq from stomach (ENCLB782VPW)

description:
https://www.encodeproject.org/experiments/ENCSR293ORS/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse stomach
experiment encode accession: ENCSR293ORS
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR497YBQ
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB782VPW
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex embryo (14.5 days)

value: stomach

value: Stomach pooled from embryonic 14.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS568AAA at ENCODE; https://www.encodeproject.org/ENCBS568AAA/


title: ChIP-seq from liver (ENCLB121HWL)

description:
https://www.encodeproject.org/experiments/ENCSR234ISO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR234ISO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742WLX
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB121HWL
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap liver tissue mixed sex embryo (14.5 days)

value: liver

value: Liver from embryonic 14.5 day mice

value: pooled male and female

value: ENCBS194VTP at ENCODE; https://www.encodeproject.org/ENCBS194VTP/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from hindbrain (ENCLB474FJX)

description:
https://www.encodeproject.org/experiments/ENCSR234YTN/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR234YTN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR896PWV
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB474FJX
size range: 300-500

value: Hindbrain from 34 embryonic 14.5 day mice

value: healthy

value: ENCBS016AAA at ENCODE; https://www.encodeproject.org/ENCBS016AAA/


title: ChIP-seq from hindbrain (ENCLB894DPB)

description:
https://www.encodeproject.org/experiments/ENCSR659EZI/
***************
biological replicate number: 1
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR659EZI
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB894DPB
size range: 300-500

value: Control

value: hindbrain

value: Hindbrain from 120 embryonic 12.5 day mice

value: ENCBS406RIE at ENCODE; https://www.encodeproject.org/ENCBS406RIE/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from liver (ENCLB024YDY)

description:
https://www.encodeproject.org/experiments/ENCSR680ZSE/
***************
biological replicate number: 1
technical replicate number: 2,1
description: Control ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR680ZSE
assay title: ChIP-seq
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB024YDY
size range: 300-500

value: tissue

value: Liver from 120 embryonic 12.5 day mice

value: ENCBS236ISK at ENCODE; https://www.encodeproject.org/ENCBS236ISK/


title: ChIP-seq from heart (ENCLB449FNO)

description:
https://www.encodeproject.org/experiments/ENCSR646GHA/
***************
biological replicate number: 1
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR646GHA
assay title: ChIP-seq
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB449FNO
size range: 300-500

value: heart

value: Heart from 12.5 day mice

value: embryonic

value: Len Pennacchio, LBNL

value: ENCBS452TDN at ENCODE; https://www.encodeproject.org/ENCBS452TDN/


title: WGBS from stomach (ENCLB314APO)

description:
https://www.encodeproject.org/experiments/ENCSR286OOJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse stomach
experiment encode accession: ENCSR286OOJ
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB314APO
size range: 180-500

value: stomach

value: Stomach from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: ENCBS561AAA at ENCODE; https://www.encodeproject.org/ENCBS561AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from liver (ENCLB510AHD)

description:
https://www.encodeproject.org/experiments/ENCSR234ISO/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 14.5 day mouse liver
experiment encode accession: ENCSR234ISO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR742WLX
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB510AHD
size range: 300-500

value: liver

value: Liver from embryonic 14.5 day mice

value: healthy

value: ENCBS096GAJ at ENCODE; https://www.encodeproject.org/ENCBS096GAJ/


title: WGBS from stomach (ENCLB919UJN)

description:
https://www.encodeproject.org/experiments/ENCSR286OOJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on postnatal 0 day mouse stomach
experiment encode accession: ENCSR286OOJ
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB919UJN
size range: 180-500

value: tissue

value: Stomach from 15 postnatal 0 day mice

value: ENCBS045AAA at ENCODE; https://www.encodeproject.org/ENCBS045AAA/


title: WGBS from stomach (ENCLB549XVC)

description:
https://www.encodeproject.org/experiments/ENCSR286OOJ/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on postnatal 0 day mouse stomach
experiment encode accession: ENCSR286OOJ
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB549XVC
size range: 180-500


title: ChIP-seq from limb (ENCLB940HKX)

description:
https://www.encodeproject.org/experiments/ENCSR232EOO/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse limb
experiment encode accession: ENCSR232EOO
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB940HKX
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap limb tissue mixed sex embryo (14.5 days)

value: Control

value: limb

value: Limb from 24 embryonic 14.5 day mice

value: embryonic

value: ENCBS011AAA at ENCODE; https://www.encodeproject.org/ENCBS011AAA/


title: ChIP-seq from embryonic facial prominence (ENCLB858VQX)

description:
https://www.encodeproject.org/experiments/ENCSR645ETR/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR645ETR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB858VQX
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (12.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from 88 embryonic 12.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS399GYO at ENCODE; https://www.encodeproject.org/ENCBS399GYO/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from heart (ENCLB137HJO)

description:
https://www.encodeproject.org/experiments/ENCSR646GHA/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR646GHA
assay title: ChIP-seq
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB137HJO
size range: 300-500

value: heart

value: pooled male and female

value: ENCBS004ZLN at ENCODE; https://www.encodeproject.org/ENCBS004ZLN/


title: ChIP-seq from midbrain (ENCLB959SNC)

description:
https://www.encodeproject.org/experiments/ENCSR283RFW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR283RFW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB959SNC
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (11.5 days)

value: midbrain

value: Midbrain of 109 embyronic 11.5 day mice

value: healthy

value: ENCBS228OBS at ENCODE; https://www.encodeproject.org/ENCBS228OBS/


title: ChIP-seq from limb (ENCLB882ILN)

description:
https://www.encodeproject.org/experiments/ENCSR231CHC/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse limb
experiment encode accession: ENCSR231CHC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR070OXL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB882ILN
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (15.5 days)

value: tissue

value: Limb from 62 embryonic 15.5 day mice

value: ENCBS696JKV at ENCODE; https://www.encodeproject.org/ENCBS696JKV/


title: ChIP-seq from midbrain (ENCLB662OCC)

description:
https://www.encodeproject.org/experiments/ENCSR283RFW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 11.5 day mouse midbrain
experiment encode accession: ENCSR283RFW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR081UQY
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB662OCC
size range: 300-500

value: Midbrain from 88 embyronic 11.5 day mice

value: embryonic

value: ENCBS802FTI at ENCODE; https://www.encodeproject.org/ENCBS802FTI/


title: ChIP-seq from limb (ENCLB870ZRI)

description:
https://www.encodeproject.org/experiments/ENCSR231CHC/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K27me3 ChIP-seq on embryonic 15.5 day mouse limb
experiment encode accession: ENCSR231CHC
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR070OXL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB870ZRI
size range: 300-500

value: limb

value: Limb from 78 embryonic 15.5 day mice

value: ENCBS735QNY at ENCODE; https://www.encodeproject.org/ENCBS735QNY/


title: ChIP-seq from stomach (ENCLB885VRN)

description:
https://www.encodeproject.org/experiments/ENCSR282OTI/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse stomach
experiment encode accession: ENCSR282OTI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR012BVY
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB885VRN
size range: 300-500

source_name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (16.5 days)

value: stomach

value: Stomach pooled from embyonic 16.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS243DCE at ENCODE; https://www.encodeproject.org/ENCBS243DCE/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB992EMM)

description:
https://www.encodeproject.org/experiments/ENCSR227UTY/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR227UTY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB992EMM
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days)

value: forebrain

value: Forebrain from 24 embyonic 14.5 day mice

value: pooled male and female

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from limb (ENCLB763MFC)

description:
https://www.encodeproject.org/experiments/ENCSR232EOO/
***************
biological replicate number: 2
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse limb
experiment encode accession: ENCSR232EOO
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB763MFC
size range: 300-500

value: Control

value: tissue

value: Limb from 34 embryonic 14.5 day mice

value: healthy

value: ENCBS023AAA at ENCODE; https://www.encodeproject.org/ENCBS023AAA/


title: ChIP-seq from forebrain (ENCLB890SKS)

description:
https://www.encodeproject.org/experiments/ENCSR227UTY/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR227UTY
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB890SKS
size range: 300-500

value: Forebrain from 34 embryonic 14.5 day mice

value: embryonic

value: ENCBS014AAA at ENCODE; https://www.encodeproject.org/ENCBS014AAA/


title: ChIP-seq from stomach (ENCLB655XWI)

description:
https://www.encodeproject.org/experiments/ENCSR282OTI/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 16.5 day mouse stomach
experiment encode accession: ENCSR282OTI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR012BVY
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB655XWI
size range: 300-500

value: stomach

value: Stomach from 41 embyonic 16.5 day mice

value: ENCBS793TEW at ENCODE; https://www.encodeproject.org/ENCBS793TEW/


title: ChIP-seq from forebrain (ENCLB189RIH)

description:
https://www.encodeproject.org/experiments/ENCSR275KPI/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR275KPI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR024JAN
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB189RIH
size range: 300-500

value: Forebrain from 109 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS745VOM at ENCODE; https://www.encodeproject.org/ENCBS745VOM/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB489KMT)

description:
https://www.encodeproject.org/experiments/ENCSR275KPI/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR275KPI
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR024JAN
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB489KMT
size range: 300-500

value: forebrain

value: Forebrain from 88 embyronic 11.5 day mice

value: pooled male and female

value: ENCBS720JOH at ENCODE; https://www.encodeproject.org/ENCBS720JOH/


title: ChIP-seq from forebrain (ENCLB668MMN)

description:
https://www.encodeproject.org/experiments/ENCSR634GFJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR634GFJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB668MMN
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days)

value: tissue

value: Forebrain from 68 embryonic 12.5 day mice

value: ENCBS617DPG at ENCODE; https://www.encodeproject.org/ENCBS617DPG/


title: ChIP-seq from limb (ENCLB050LYH)

description:
https://www.encodeproject.org/experiments/ENCSR629AFL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR629AFL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB050LYH
size range: 300-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (12.5 days)

value: limb

value: Limb from 88 embryonic 12.5 day mice

value: healthy

value: ENCBS731DGJ at ENCODE; https://www.encodeproject.org/ENCBS731DGJ/


title: ChIP-seq from neural tube (ENCLB316QRH)

description:
https://www.encodeproject.org/experiments/ENCSR207UMX/
***************
biological replicate number: 2
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR207UMX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR351BDM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB316QRH
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (15.5 days)

value: neural tube

value: Neural tube from 62 embryonic 15.5 day mice

value: embryonic

value: ENCBS206NRE at ENCODE; https://www.encodeproject.org/ENCBS206NRE/


title: ChIP-seq from limb (ENCLB865ZZJ)

description:
https://www.encodeproject.org/experiments/ENCSR629AFL/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR629AFL
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR218CUA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB865ZZJ
size range: 300-500

value: Limb from 68 embryonic 12.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS313XRY at ENCODE; https://www.encodeproject.org/ENCBS313XRY/


title: microRNA-seq from intestine (ENCLB996OJZ)

description:
https://www.encodeproject.org/experiments/ENCSR212RKJ/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR212RKJ
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB996OJZ
size range: <30

source_name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (16.5 days)

value: intestine

value: Intestine from 41 embyonic 16.5 day mice

value: ENCBS072GMU at ENCODE; https://www.encodeproject.org/ENCBS072GMU/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from forebrain (ENCLB297IYZ)

description:
https://www.encodeproject.org/experiments/ENCSR271HQP/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR271HQP
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB297IYZ
size range: 180-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (11.5 days)

value: forebrain

value: tissue

value: Forebrain from 88 embyronic 11.5 day mice

value: pooled male and female

value: ENCBS720JOH at ENCODE; https://www.encodeproject.org/ENCBS720JOH/


title: WGBS from forebrain (ENCLB047LKD)

description:
https://www.encodeproject.org/experiments/ENCSR271HQP/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR271HQP
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB047LKD
size range: 180-500

value: healthy


title: ChIP-seq from embryonic facial prominence (ENCLB386MLJ)

description:
https://www.encodeproject.org/experiments/ENCSR645ETR/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR645ETR
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB386MLJ
size range: 300-500

value: embryonic facial prominence

value: Embryonic facial prominence from 120 embryonic 12.5 day mice

value: ENCBS047UII at ENCODE; https://www.encodeproject.org/ENCBS047UII/


title: ChIP-seq from neural tube (ENCLB170NNB)

description:
https://www.encodeproject.org/experiments/ENCSR207UMX/
***************
biological replicate number: 1
technical replicate number: 2,1
description: H3K36me3 ChIP-seq on embryonic 15.5 day mouse neural tube
experiment encode accession: ENCSR207UMX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR351BDM
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB170NNB
size range: 300-500

value: neural tube

value: Neural tube from 78 embryonic 15.5 day mice

value: embryonic

value: ENCBS944KEZ at ENCODE; https://www.encodeproject.org/ENCBS944KEZ/


title: ChIP-seq from liver (ENCLB034YGM)

description:
https://www.encodeproject.org/experiments/ENCSR274AQL/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Input control ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR274AQL
assay title: ChIP-seq
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB034YGM
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days)

value: Control

value: liver

value: Liver from 62 embryonic 15.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/


title: ChIP-seq from liver (ENCLB453UPE)

description:
https://www.encodeproject.org/experiments/ENCSR607HIQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR607HIQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB453UPE
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (12.5 days)

value: tissue

value: Liver from 120 embryonic 12.5 day mice

value: ENCBS236ISK at ENCODE; https://www.encodeproject.org/ENCBS236ISK/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: microRNA-seq from intestine (ENCLB789ARB)

description:
https://www.encodeproject.org/experiments/ENCSR212RKJ/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq on embryonic 16.5 day mouse intestine
experiment encode accession: ENCSR212RKJ
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-03-16
lab: Ali Mortazavi, UCI
library encode accession: ENCLB789ARB
size range: <30

value: intestine

value: Intestine pooled from embyonic 16.5 day mice

value: pooled male and female

value: healthy

value: ENCBS856EWN at ENCODE; https://www.encodeproject.org/ENCBS856EWN/


title: ChIP-seq from midbrain (ENCLB471FGN)

description:
https://www.encodeproject.org/experiments/ENCSR205XBQ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K36me3 ChIP-seq on embryonic 16.5 day mouse midbrain
experiment encode accession: ENCSR205XBQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR817FFF
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB471FGN
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (16.5 days)

value: midbrain

value: Midbrain pooled from embyonic 16.5 day mice

value: ENCBS684MLE at ENCODE; https://www.encodeproject.org/ENCBS684MLE/


title: ChIP-seq from midbrain (ENCLB103YRV)

description:
https://www.encodeproject.org/experiments/ENCSR203KIB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR203KIB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR413VHH
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB103YRV
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex embryo (14.5 days)

value: Midbrain from 24 embryonic 14.5 day mice

value: embryonic

value: ENCBS003AAA at ENCODE; https://www.encodeproject.org/ENCBS003AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: WGBS from forebrain (ENCLB965CYD)

description:
https://www.encodeproject.org/experiments/ENCSR271HQP/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR271HQP
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB965CYD
size range: 180-500

value: forebrain

value: Forebrain from 109 embyronic 11.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS745VOM at ENCODE; https://www.encodeproject.org/ENCBS745VOM/


title: ChIP-seq from liver (ENCLB440LPV)

description:
https://www.encodeproject.org/experiments/ENCSR642ZLN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR642ZLN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB440LPV
size range: 300-500

value: liver

value: tissue

value: Liver from 120 embryonic 12.5 day mice

value: ENCBS236ISK at ENCODE; https://www.encodeproject.org/ENCBS236ISK/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB579WYQ)

description:
https://www.encodeproject.org/experiments/ENCSR583ZEV/
***************
biological replicate number: 1
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 13.5 day mouse forebrain
experiment encode accession: ENCSR583ZEV
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB579WYQ
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (13.5 days)

value: Control

value: Forebrain from embryonic 13.5 day mice

value: pooled male and female

value: healthy

value: ENCBS273RVL at ENCODE; https://www.encodeproject.org/ENCBS273RVL/


title: WGBS from forebrain (ENCLB259WIJ)

description:
https://www.encodeproject.org/experiments/ENCSR271HQP/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 11.5 day mouse forebrain
experiment encode accession: ENCSR271HQP
assay title: WGBS
assembly: mm10
encode release date: 2014-06-30
lab: Joe Ecker, Salk
library encode accession: ENCLB259WIJ
size range: 180-500

value: embryonic


title: ChIP-seq from midbrain (ENCLB357BZR)

description:
https://www.encodeproject.org/experiments/ENCSR205XBQ/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on embryonic 16.5 day mouse midbrain
experiment encode accession: ENCSR205XBQ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR817FFF
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB357BZR
size range: 300-500
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: midbrain

value: Midbrain from 37 embryonic 16.5 day mice

value: ENCBS463JSE at ENCODE; https://www.encodeproject.org/ENCBS463JSE/


title: ChIP-seq from liver (ENCLB198OPM)

description:
https://www.encodeproject.org/experiments/ENCSR642ZLN/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27me3 ChIP-seq on embryonic 12.5 day mouse liver
experiment encode accession: ENCSR642ZLN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR680ZSE
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB198OPM
size range: 300-500

value: Liver from 88 embryonic 12.5 day mice

value: ENCBS479VPX at ENCODE; https://www.encodeproject.org/ENCBS479VPX/


title: ChIP-seq from forebrain (ENCLB540QFI)

description:
https://www.encodeproject.org/experiments/ENCSR270WWV/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR270WWV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2016-03-16
lab: Bing Ren, UCSD
library encode accession: ENCLB540QFI
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: forebrain

value: Forebrain from 24 embyonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from midbrain (ENCLB869AEP)

description:
https://www.encodeproject.org/experiments/ENCSR203KIB/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 14.5 day mouse midbrain
experiment encode accession: ENCSR203KIB
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR413VHH
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB869AEP
size range: 300-500

value: tissue

value: Midbrain from 34 embryonic 14.5 day mice

value: ENCBS015AAA at ENCODE; https://www.encodeproject.org/ENCBS015AAA/


title: ChIP-seq from forebrain (ENCLB244LUH)

description:
https://www.encodeproject.org/experiments/ENCSR583ZEV/
***************
biological replicate number: 2
technical replicate number: 1,2
description: Control ChIP-seq on embryonic 13.5 day mouse forebrain
experiment encode accession: ENCSR583ZEV
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB244LUH
size range: 300-500

value: Control

value: Forebrain from embryonic 13.5 day mice

value: pooled male and female

value: ENCBS793ZRY at ENCODE; https://www.encodeproject.org/ENCBS793ZRY/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB812OFN)

description:
https://www.encodeproject.org/experiments/ENCSR634GFJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR634GFJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB812OFN
size range: 300-500

value: Forebrain from 120 embryonic 12.5 day mice

value: embryonic

value: healthy

value: ENCBS974GPH at ENCODE; https://www.encodeproject.org/ENCBS974GPH/


title: WGBS from heart (ENCLB494KTO)

description:
https://www.encodeproject.org/experiments/ENCSR265OMO/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR265OMO
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB494KTO
size range: 180-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (15.5 days)

value: heart

value: Heart from 62 embryonic 15.5 day mice

value: ENCBS909LOF at ENCODE; https://www.encodeproject.org/ENCBS909LOF/


title: ChIP-seq from intestine (ENCLB887KOJ)

description:
https://www.encodeproject.org/experiments/ENCSR198ACZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR198ACZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB887KOJ
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days)

value: intestine

value: Intestine from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: Len Pennacchio, LBNL

value: ENCBS044AAA at ENCODE; https://www.encodeproject.org/ENCBS044AAA/


title: WGBS from heart (ENCLB154WOQ)

description:
https://www.encodeproject.org/experiments/ENCSR265OMO/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR265OMO
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB154WOQ
size range: 180-500

value: tissue


title: ChIP-seq from hindbrain (ENCLB871PMH)

description:
https://www.encodeproject.org/experiments/ENCSR576XBN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR576XBN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB871PMH
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days)

value: hindbrain

value: Hindbrain from 120 embryonic 12.5 day mice

value: pooled male and female

value: ENCBS406RIE at ENCODE; https://www.encodeproject.org/ENCBS406RIE/


title: ChIP-seq from heart (ENCLB029JYO)

description:
https://www.encodeproject.org/experiments/ENCSR557SVH/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR557SVH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB029JYO
size range: 300-500

source_name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (12.5 days)

value: Heart from 12.5 day mice

value: embryonic

value: ENCBS452TDN at ENCODE; https://www.encodeproject.org/ENCBS452TDN/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from forebrain (ENCLB974CDP)

description:
https://www.encodeproject.org/experiments/ENCSR270WWV/
***************
biological replicate number: 2
technical replicate number: 1,2
description: H3K9me3 ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR270WWV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR244YQD
encode release date: 2016-03-16
lab: Bing Ren, UCSD
library encode accession: ENCLB974CDP
size range: 300-500
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000

value: forebrain

value: Forebrain from 34 embryonic 14.5 day mice

value: healthy

value: ENCBS014AAA at ENCODE; https://www.encodeproject.org/ENCBS014AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from embryonic facial prominence (ENCLB853BUZ)

description:
https://www.encodeproject.org/experiments/ENCSR582IBX/
***************
biological replicate number: 1
technical replicate number: 1,2
description: H3K36me3 ChIP-seq on embryonic 12.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR582IBX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR445HBA
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB853BUZ
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (12.5 days)

value: embryonic facial prominence

value: Embryonic facial prominence from 120 embryonic 12.5 day mice

value: ENCBS047UII at ENCODE; https://www.encodeproject.org/ENCBS047UII/


title: ChIP-seq from forebrain (ENCLB719CNT)

description:
https://www.encodeproject.org/experiments/ENCSR258YWW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on postnatal 0 day mouse forebrain
experiment encode accession: ENCSR258YWW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR398NCK
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB719CNT
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex postnatal (0 days)

value: tissue

value: Forebrain from 15 postnatal 0 day mice

value: 0 day

value: postnatal

value: Len Pennacchio, LBNL

value: ENCBS038AAA at ENCODE; https://www.encodeproject.org/ENCBS038AAA/


title: WGBS from heart (ENCLB857VNP)

description:
https://www.encodeproject.org/experiments/ENCSR265OMO/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR265OMO
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB857VNP
size range: 180-500

value: heart

value: Heart from 78 embryonic 15.5 day mice

value: embryonic

value: pooled male and female

value: ENCBS595EMK at ENCODE; https://www.encodeproject.org/ENCBS595EMK/


title: ChIP-seq from embryonic facial prominence (ENCLB322NIC)

description:
https://www.encodeproject.org/experiments/ENCSR193AEW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR193AEW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR981PSX
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB322NIC
size range: 300-500

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (15.5 days)

value: Embryonic facial prominence from 62 embryonic 15.5 day mice

value: healthy

value: ENCBS900XQR at ENCODE; https://www.encodeproject.org/ENCBS900XQR/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: microRNA-seq from embryonic facial prominence (ENCLB020YQP)

description:
https://www.encodeproject.org/experiments/ENCSR199LBO/
***************
biological replicate number: 2
technical replicate number: 1
description: miRNA-seq  on embryonic 14.5 day mouse cranioface
experiment encode accession: ENCSR199LBO
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-01-06
lab: Ali Mortazavi, UCI
library encode accession: ENCLB020YQP
size range: <30

source_name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (14.5 days)

value: embryonic facial prominence

value: single cranioface from pup 1 pregnant 2 collected 7/30/2014

value: Barbara Wold, Caltech

value: ENCBS903HZW at ENCODE; https://www.encodeproject.org/ENCBS903HZW/


title: ChIP-seq from hindbrain (ENCLB730NNQ)

description:
https://www.encodeproject.org/experiments/ENCSR576XBN/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 12.5 day mouse hindbrain
experiment encode accession: ENCSR576XBN
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR659EZI
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB730NNQ
size range: 300-500

value: hindbrain

value: tissue

value: Hindbrain from 88 embryonic 12.5 day mice

value: ENCBS022IBY at ENCODE; https://www.encodeproject.org/ENCBS022IBY/


title: ChIP-seq from heart (ENCLB603GIW)

description:
https://www.encodeproject.org/experiments/ENCSR557SVH/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR557SVH
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR646GHA
encode release date: 2016-04-22
lab: Bing Ren, UCSD
library encode accession: ENCLB603GIW
size range: 300-500

value: heart

value: Len Pennacchio, LBNL

value: ENCBS004ZLN at ENCODE; https://www.encodeproject.org/ENCBS004ZLN/


title: ChIP-seq from intestine (ENCLB408LKF)

description:
https://www.encodeproject.org/experiments/ENCSR198ACZ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on postnatal 0 day mouse intestine
experiment encode accession: ENCSR198ACZ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR898PML
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB408LKF
size range: 300-500

value: intestine

value: Intestine from pooled postnatal 0 day mice

value: 0 day

value: postnatal

value: pooled male and female

value: ENCBS560AAA at ENCODE; https://www.encodeproject.org/ENCBS560AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from embryonic facial prominence (ENCLB784XDJ)

description:
https://www.encodeproject.org/experiments/ENCSR193AEW/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse embryonic facial prominence
experiment encode accession: ENCSR193AEW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR981PSX
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB784XDJ
size range: 300-500

value: embryonic facial prominence

value: Embryonic facial prominence from 78 embryonic 15.5 day mice

value: embryonic

value: healthy

value: ENCBS543BPM at ENCODE; https://www.encodeproject.org/ENCBS543BPM/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from liver (ENCLB671IQG)

description:
https://www.encodeproject.org/experiments/ENCSR191XHV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 13.5 day mouse liver
experiment encode accession: ENCSR191XHV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR220PXJ
encode release date: 2016-02-23
lab: Bing Ren, UCSD
library encode accession: ENCLB671IQG
size range: 300-500

source_name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (13.5 days)

value: liver

value: tissue

value: Liver from embryonic 13.5 day mice

value: ENCBS373XWZ at ENCODE; https://www.encodeproject.org/ENCBS373XWZ/


title: ChIP-seq from forebrain (ENCLB518SIB)

description:
https://www.encodeproject.org/experiments/ENCSR258YWW/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on postnatal 0 day mouse forebrain
experiment encode accession: ENCSR258YWW
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR398NCK
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB518SIB
size range: 300-500

value: forebrain

value: Forebrain of pooled postnatal 0 day mice

value: Len Pennacchio, LBNL

value: ENCBS554AAA at ENCODE; https://www.encodeproject.org/ENCBS554AAA/


title: ChIP-seq from midbrain (ENCLB665OCR)

description:
https://www.encodeproject.org/experiments/ENCSR554TSO/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR554TSO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB665OCR
size range: 300-500

source_name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days)

value: midbrain

value: Midbrain from 88 embryonic 12.5 day mice

value: pooled male and female

value: ENCBS280TPA at ENCODE; https://www.encodeproject.org/ENCBS280TPA/


title: microRNA-seq from embryonic facial prominence (ENCLB731JUL)

description:
https://www.encodeproject.org/experiments/ENCSR199LBO/
***************
biological replicate number: 1
technical replicate number: 1
description: miRNA-seq  on embryonic 14.5 day mouse cranioface
experiment encode accession: ENCSR199LBO
assay title: microRNA-seq
assembly: mm10
encode release date: 2016-01-06
lab: Ali Mortazavi, UCI
library encode accession: ENCLB731JUL
size range: <30

value: embryonic facial prominence

value: single cranioface from pup 1 pregnant 2 collected 7/24/2014

value: Barbara Wold, Caltech

value: ENCBS776GWF at ENCODE; https://www.encodeproject.org/ENCBS776GWF/


title: ChIP-seq from liver (ENCLB126JKK)

description:
https://www.encodeproject.org/experiments/ENCSR191XHV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on embryonic 13.5 day mouse liver
experiment encode accession: ENCSR191XHV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR220PXJ
encode release date: 2016-02-23
lab: Bing Ren, UCSD
library encode accession: ENCLB126JKK
size range: 300-500

value: embryonic

value: healthy

value: ENCBS146FGW at ENCODE; https://www.encodeproject.org/ENCBS146FGW/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: ChIP-seq from hindbrain (ENCLB978DRN)

description:
https://www.encodeproject.org/experiments/ENCSR545RUT/
***************
biological replicate number: 1
technical replicate number: 2,1,3
description: Control ChIP-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR545RUT
assay title: ChIP-seq
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB978DRN
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (13.5 days)

value: Control

value: hindbrain

value: tissue

value: Hindbrain from embryonic 13.5 day mice

value: ENCBS052EWC at ENCODE; https://www.encodeproject.org/ENCBS052EWC/


title: WGBS from heart (ENCLB559DXH)

description:
https://www.encodeproject.org/experiments/ENCSR258MDR/
***************
biological replicate number: 2
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR258MDR
assay title: WGBS
assembly: mm10
encode release date: 2016-05-04
lab: Joe Ecker, Salk
library encode accession: ENCLB559DXH
size range: 180-500

value: heart

value: Len Pennacchio, LBNL

value: ENCBS004ZLN at ENCODE; https://www.encodeproject.org/ENCBS004ZLN/


title: ChIP-seq from liver (ENCLB685PRU)

description:
https://www.encodeproject.org/experiments/ENCSR258RGT/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me2 ChIP-seq on embryonic 15.5 day mouse liver
experiment encode accession: ENCSR258RGT
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR274AQL
encode release date: 2015-11-03
lab: Bing Ren, UCSD
library encode accession: ENCLB685PRU
size range: 300-500

value: liver

value: Liver from 62 embryonic 15.5 day mice

value: pooled male and female

value: ENCBS966PAM at ENCODE; https://www.encodeproject.org/ENCBS966PAM/


title: WGBS from heart (ENCLB466JGR)

description:
https://www.encodeproject.org/experiments/ENCSR265OMO/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 15.5 day mouse heart
experiment encode accession: ENCSR265OMO
assay title: WGBS
assembly: mm10
encode release date: 2015-06-23
lab: Joe Ecker, Salk
library encode accession: ENCLB466JGR
size range: 180-500

value: Heart from 78 embryonic 15.5 day mice

value: ENCBS595EMK at ENCODE; https://www.encodeproject.org/ENCBS595EMK/


title: ChIP-seq from forebrain (ENCLB157RFC)

description:
https://www.encodeproject.org/experiments/ENCSR244YQD/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on embryonic 14.5 day mouse forebrain
experiment encode accession: ENCSR244YQD
assay title: ChIP-seq
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB157RFC
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days)

value: forebrain

value: Forebrain from 24 embyonic 14.5 day mice

value: embryonic

value: healthy

value: ENCBS002AAA at ENCODE; https://www.encodeproject.org/ENCBS002AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from hindbrain (ENCLB579TSG)

description:
https://www.encodeproject.org/experiments/ENCSR190RKJ/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR190RKJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR545RUT
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB579TSG
size range: 300-500

value: hindbrain

value: tissue

value: Hindbrain from embryonic 13.5 day mice

value: ENCBS296PIR at ENCODE; https://www.encodeproject.org/ENCBS296PIR/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from heart (ENCLB371PVL)

description:
https://www.encodeproject.org/experiments/ENCSR258MDR/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR258MDR
assay title: WGBS
assembly: mm10
encode release date: 2016-05-04
lab: Joe Ecker, Salk
library encode accession: ENCLB371PVL
size range: 180-500

value: heart

value: Len Pennacchio, LBNL

value: ENCBS004ZLN at ENCODE; https://www.encodeproject.org/ENCBS004ZLN/


title: WGBS from heart (ENCLB619NFH)

description:
https://www.encodeproject.org/experiments/ENCSR258MDR/
***************
biological replicate number: 1
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR258MDR
assay title: WGBS
assembly: mm10
encode release date: 2016-05-04
lab: Joe Ecker, Salk
library encode accession: ENCLB619NFH
size range: 180-500

value: Heart from 12.5 day mice

value: pooled male and female

value: ENCBS452TDN at ENCODE; https://www.encodeproject.org/ENCBS452TDN/


title: ChIP-seq from hindbrain (ENCLB932JMI)

description:
https://www.encodeproject.org/experiments/ENCSR190RKJ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 13.5 day mouse hindbrain
experiment encode accession: ENCSR190RKJ
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR545RUT
encode release date: 2015-06-23
lab: Bing Ren, UCSD
library encode accession: ENCLB932JMI
size range: 300-500

value: ENCBS052EWC at ENCODE; https://www.encodeproject.org/ENCBS052EWC/


title: WGBS from heart (ENCLB363EFN)

description:
https://www.encodeproject.org/experiments/ENCSR258MDR/
***************
biological replicate number: 1
technical replicate number: 1
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse heart
experiment encode accession: ENCSR258MDR
assay title: WGBS
assembly: mm10
encode release date: 2016-05-04
lab: Joe Ecker, Salk
library encode accession: ENCLB363EFN
size range: 180-500


title: ChIP-seq from neural tube (ENCLB173XMT)

description:
https://www.encodeproject.org/experiments/ENCSR538SRO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR538SRO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB173XMT
size range: 300-500

source_name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (12.5 days)

value: neural tube

value: Neural tube from 120 embryonic 12.5 day mice

value: ENCBS405OOH at ENCODE; https://www.encodeproject.org/ENCBS405OOH/


title: ChIP-seq from neural tube (ENCLB434XIF)

description:
https://www.encodeproject.org/experiments/ENCSR538SRO/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse neural tube
experiment encode accession: ENCSR538SRO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR991FSR
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB434XIF
size range: 300-500

value: Neural tube from 88 embryonic 12.5 day mice

value: embryonic

value: healthy

value: ENCBS254TSW at ENCODE; https://www.encodeproject.org/ENCBS254TSW/


title: ChIP-seq from midbrain (ENCLB607GZL)

description:
https://www.encodeproject.org/experiments/ENCSR554TSO/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse midbrain
experiment encode accession: ENCSR554TSO
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR415FCU
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB607GZL
size range: 300-500

value: midbrain

value: tissue

value: Midbrain from 120 embryonic 12.5 day mice

value: ENCBS309WCU at ENCODE; https://www.encodeproject.org/ENCBS309WCU/


title: ChIP-seq from hindbrain (ENCLB179JXV)

description:
https://www.encodeproject.org/experiments/ENCSR186PIV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR186PIV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR896PWV
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB179JXV
size range: 300-500

source_name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex embryo (14.5 days)

value: hindbrain

value: Hindbrain from 24 embryonic 14.5 day mice

value: Len Pennacchio, LBNL

value: ENCBS004AAA at ENCODE; https://www.encodeproject.org/ENCBS004AAA/

value: Derived from ENCODE donor ENCDO469XMJ; https://www.encodeproject.org/ENCDO469XMJ/


title: ChIP-seq from hindbrain (ENCLB152YXH)

description:
https://www.encodeproject.org/experiments/ENCSR186PIV/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K9ac ChIP-seq on embryonic 14.5 day mouse hindbrain
experiment encode accession: ENCSR186PIV
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR896PWV
encode release date: 2014-06-30
lab: Bing Ren, UCSD
library encode accession: ENCLB152YXH
size range: 300-500

value: Hindbrain from 34 embryonic 14.5 day mice

value: pooled male and female

value: ENCBS016AAA at ENCODE; https://www.encodeproject.org/ENCBS016AAA/


title: ChIP-seq from hindbrain (ENCLB011PLU)

description:
https://www.encodeproject.org/experiments/ENCSR257JSX/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K4me1 ChIP-seq on embryonic 16.5 day mouse hindbrain
experiment encode accession: ENCSR257JSX
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR752KDM
encode release date: 2014-12-17
lab: Bing Ren, UCSD
library encode accession: ENCLB011PLU
size range: 300-500

source_name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (16.5 days)

value: Hindbrain from 37 embryonic 16.5 day mice

value: ENCBS281ZLI at ENCODE; https://www.encodeproject.org/ENCBS281ZLI/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/


title: WGBS from limb (ENCLB515BAC)

description:
https://www.encodeproject.org/experiments/ENCSR254OTS/
***************
biological replicate number: 2
technical replicate number: 2
description: Whole genome bisulfite-seq on embryonic 12.5 day mouse limb
experiment encode accession: ENCSR254OTS
assay title: WGBS
assembly: mm10
encode release date: 2016-03-14
lab: Joe Ecker, Salk
library encode accession: ENCLB515BAC
size range: 180-500

source_name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (12.5 days)

value: limb

value: Limb from 68 embryonic 12.5 day mice

value: embryonic

value: healthy

value: ENCBS313XRY at ENCODE; https://www.encodeproject.org/ENCBS313XRY/


title: ChIP-seq from forebrain (ENCLB426CKY)

description:
https://www.encodeproject.org/experiments/ENCSR527EUE/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on embryonic 12.5 day mouse forebrain
experiment encode accession: ENCSR527EUE
assay title: ChIP-seq
assembly: mm10
possible controls: ENCSR523QKO
encode release date: 2016-03-30
lab: Bing Ren, UCSD
library encode accession: ENCLB426CKY
size range: 300-500

source_name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days)

value: forebrain

value: tissue

value: Forebrain from 120 embryonic 12.5 day mice

value: ENCBS974GPH at ENCODE; https://www.encodeproject.org/ENCBS974GPH/