title: Hi-C from A549 (ENCLB981OUL)

description:
https://www.encodeproject.org/experiments/ENCSR499RVD/
***************
biological replicate number: 4
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR499RVD
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB981OUL
size range: >200

value: ENCBS141FQJ at ENCODE; https://www.encodeproject.org/ENCBS141FQJ/


title: Hi-C from A549 (ENCLB023XYB)

status: Public on Jan 10 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR499RVD/
***************
biological replicate number: 2
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR499RVD
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB023XYB
size range: >200

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens A549 immortalized cell line

tag: line

value: immortalized cell line

tag: biosample encode accession

tag: dev stage

value: adult

tag: age

value: 58 year

tag: Sex

value: male

tag: lab

value: Tim Reddy, Duke

tag: link

value: ENCBS363RMQ at ENCODE; https://www.encodeproject.org/ENCBS363RMQ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Hi-C from A549 (ENCLB995AFN)

description:
https://www.encodeproject.org/experiments/ENCSR499RVD/
***************
biological replicate number: 1
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR499RVD
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB995AFN
size range: >200

value: ENCBS681LUH at ENCODE; https://www.encodeproject.org/ENCBS681LUH/


title: polyA mRNA RNA-seq from A549 (ENCLB348OJL)

description:
https://www.encodeproject.org/experiments/ENCSR546PPG/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR546PPG
assay title: polyA mRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR632DQP
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB348OJL
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

library_source: transcriptomic

molecule: total RNA

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 8 hours

extract_protocol:
general protocol: https://www.encodeproject.org/documents/5533fb32-41f1-4c7a-b62d-0095a33cab20/@@download/attachment/01_RNA_HARVEST_and_ISOLATION_Reddy_GGR.pdf
extraction protocol: https://www.encodeproject.org/documents/53726435-7acc-4248-a5df-3eef6ea3b422/@@download/attachment/02_Rev%20D%20Quick%20Reference%20Card%2C%20PrepX%20PolyA%2048%20Protocol.pdf
extraction protocol: https://www.encodeproject.org/documents/5f9d4f74-4e39-4818-9ee9-d8e9b8004ceb/@@download/attachment/03_RevC%20Quick%20Reference%20Card%2C%20PrepX%20mRNA%2048%20Protocol.pdf
extraction protocol: https://www.encodeproject.org/documents/c72e898e-82c7-478d-b043-8945133a7724/@@download/attachment/04_Rev%20C%20Quick%20Reference%20Card%2C%20PrepX%20PCR%20Cleanup%2048%20Protocol.pdf
general protocol: https://www.encodeproject.org/documents/7a683e77-85ac-45f9-b1fa-b6ceb50ca1bc/@@download/attachment/05_POST_RNA_LIB_PREP_Reddy_GGR.pdf
extraction method: RNeasy Plus Mini Kit Qiagen cat#74134 plus additional on column Dnase treatment

tag: treatments

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS004IAZ at ENCODE; https://www.encodeproject.org/ENCBS004IAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: Hi-C from A549 (ENCLB729NDZ)

description:
https://www.encodeproject.org/experiments/ENCSR499RVD/
***************
biological replicate number: 4
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR499RVD
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB729NDZ
size range: >200


title: ChIP-seq from A549 (ENCLB990PGF)

description:
https://www.encodeproject.org/experiments/ENCSR544GUO/
***************
biological replicate number: 2
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR544GUO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB990PGF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

tag: antibody

value: ENCBS242RJZ at ENCODE; https://www.encodeproject.org/ENCBS242RJZ/


title: ChIP-seq from A549 (ENCLB179BBR)

description:
https://www.encodeproject.org/experiments/ENCSR555AYD/
***************
biological replicate number: 1
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR555AYD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR909GTY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB179BBR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 7 hours

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS944BMM at ENCODE; https://www.encodeproject.org/ENCBS944BMM/


title: ChIP-seq from A549 (ENCLB324GLA)

description:
https://www.encodeproject.org/experiments/ENCSR544GUO/
***************
biological replicate number: 1
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR544GUO
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR600LQZ
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB324GLA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS601YNV at ENCODE; https://www.encodeproject.org/ENCBS601YNV/


title: Hi-C from A549 (ENCLB870JCZ)

description:
https://www.encodeproject.org/experiments/ENCSR499RVD/
***************
biological replicate number: 1
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR499RVD
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB870JCZ
size range: >200


title: Hi-C from A549 (ENCLB004YSZ)

description:
https://www.encodeproject.org/experiments/ENCSR662QKG/
***************
biological replicate number: 2
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR662QKG
assay title: Hi-C
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB004YSZ
size range: >200

value: ENCBS876WBK at ENCODE; https://www.encodeproject.org/ENCBS876WBK/


title: polyA mRNA RNA-seq from A549 (ENCLB983DRL)

description:
https://www.encodeproject.org/experiments/ENCSR543QRU/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR543QRU
assay title: polyA mRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR632DQP
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB983DRL
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 5 hours

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS178CIW at ENCODE; https://www.encodeproject.org/ENCBS178CIW/


title: ChIP-seq from A549 (ENCLB359UIN)

description:
https://www.encodeproject.org/experiments/ENCSR543ZVZ/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR543ZVZ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR872BBM
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB359UIN
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 4 hours

value: immortalized cell line

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS029TTL at ENCODE; https://www.encodeproject.org/ENCBS029TTL/


title: ChIP-seq from A549 (ENCLB500AUW)

description:
https://www.encodeproject.org/experiments/ENCSR537FVU/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR537FVU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR548SPY
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB500AUW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 1 hour

value: 58 year

value: male

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS804CVK at ENCODE; https://www.encodeproject.org/ENCBS804CVK/


title: Hi-C from A549 (ENCLB817NEZ)

description:
https://www.encodeproject.org/experiments/ENCSR662QKG/
***************
biological replicate number: 3
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR662QKG
assay title: Hi-C
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB817NEZ
size range: >200

value: ENCBS989MQH at ENCODE; https://www.encodeproject.org/ENCBS989MQH/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB466QMT)

description:
https://www.encodeproject.org/experiments/ENCSR535HFQ/
***************
biological replicate number: 3
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR535HFQ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB466QMT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 6 hours

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS134FJI at ENCODE; https://www.encodeproject.org/ENCBS134FJI/


title: Hi-C from A549 (ENCLB134YNH)

description:
https://www.encodeproject.org/experiments/ENCSR393LOP/
***************
biological replicate number: 4
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR393LOP
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB134YNH
size range: >200

value: ENCBS715QQC at ENCODE; https://www.encodeproject.org/ENCBS715QQC/


title: Hi-C from A549 (ENCLB435ZYQ)

description:
https://www.encodeproject.org/experiments/ENCSR393LOP/
***************
biological replicate number: 2
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR393LOP
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB435ZYQ
size range: >200

value: ENCBS775XSE at ENCODE; https://www.encodeproject.org/ENCBS775XSE/


title: Hi-C from A549 (ENCLB482XCK)

description:
https://www.encodeproject.org/experiments/ENCSR393LOP/
***************
biological replicate number: 2
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR393LOP
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB482XCK
size range: >200


title: ChIP-seq from A549 (ENCLB393LDK)

description:
https://www.encodeproject.org/experiments/ENCSR537FVU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR537FVU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR548SPY
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB393LDK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS581KGX at ENCODE; https://www.encodeproject.org/ENCBS581KGX/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: Hi-C from A549 (ENCLB056KOK)

description:
https://www.encodeproject.org/experiments/ENCSR393LOP/
***************
biological replicate number: 1
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR393LOP
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB056KOK
size range: >200

value: immortalized cell line

value: ENCBS841KAV at ENCODE; https://www.encodeproject.org/ENCBS841KAV/


title: Hi-C from A549 (ENCLB167CNB)

description:
https://www.encodeproject.org/experiments/ENCSR393LOP/
***************
biological replicate number: 3
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR393LOP
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB167CNB
size range: >200

value: adult

value: ENCBS311LQB at ENCODE; https://www.encodeproject.org/ENCBS311LQB/


title: Hi-C from A549 (ENCLB018ISO)

description:
https://www.encodeproject.org/experiments/ENCSR393LOP/
***************
biological replicate number: 1
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR393LOP
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB018ISO
size range: >200

value: 58 year


title: ChIP-seq from A549 (ENCLB385PZE)

description:
https://www.encodeproject.org/experiments/ENCSR535HFQ/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR535HFQ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB385PZE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS467NGP at ENCODE; https://www.encodeproject.org/ENCBS467NGP/


title: ChIP-seq from A549 (ENCLB685RRQ)

description:
https://www.encodeproject.org/experiments/ENCSR529YKU/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR529YKU
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR549SVK
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB685RRQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 12 hours

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: Tim Reddy, Duke

value: ENCBS219THB at ENCODE; https://www.encodeproject.org/ENCBS219THB/


title: DNase-seq from A549 (ENCLB333GBB)

description:
https://www.encodeproject.org/experiments/ENCSR523FJT/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR523FJT
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB333GBB

value: ENCBS652QEI at ENCODE; https://www.encodeproject.org/ENCBS652QEI/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB998FTU)

description:
https://www.encodeproject.org/experiments/ENCSR524UOX/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR524UOX
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB998FTU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS262AII at ENCODE; https://www.encodeproject.org/ENCBS262AII/


title: Hi-C from A549 (ENCLB743EXW)

description:
https://www.encodeproject.org/experiments/ENCSR244BBG/
***************
biological replicate number: 1
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR244BBG
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB743EXW
size range: >200

value: ENCBS335EZX at ENCODE; https://www.encodeproject.org/ENCBS335EZX/


title: Hi-C from A549 (ENCLB895OGY)

description:
https://www.encodeproject.org/experiments/ENCSR244BBG/
***************
biological replicate number: 3
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR244BBG
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB895OGY
size range: >200

value: ENCBS302MZJ at ENCODE; https://www.encodeproject.org/ENCBS302MZJ/


title: ChIP-seq from A549 (ENCLB904WJY)

description:
https://www.encodeproject.org/experiments/ENCSR516IVY/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR516IVY
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR838ZAU
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB904WJY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS876CAE at ENCODE; https://www.encodeproject.org/ENCBS876CAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: Hi-C from A549 (ENCLB963JZD)

description:
https://www.encodeproject.org/experiments/ENCSR244BBG/
***************
biological replicate number: 2
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR244BBG
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB963JZD
size range: >200

value: immortalized cell line

value: ENCBS944DJS at ENCODE; https://www.encodeproject.org/ENCBS944DJS/


title: ChIP-seq from A549 (ENCLB768ZTA)

description:
https://www.encodeproject.org/experiments/ENCSR491TAD/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR491TAD
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB768ZTA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 30 minutes

value: Control

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS314UJS at ENCODE; https://www.encodeproject.org/ENCBS314UJS/


title: Hi-C from A549 (ENCLB738ZQB)

description:
https://www.encodeproject.org/experiments/ENCSR244BBG/
***************
biological replicate number: 1
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR244BBG
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB738ZQB
size range: >200

value: 58 year

value: male


title: Hi-C from A549 (ENCLB623JMK)

description:
https://www.encodeproject.org/experiments/ENCSR244BBG/
***************
biological replicate number: 2
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR244BBG
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB623JMK
size range: >200

value: Tim Reddy, Duke


title: Hi-C from A549 (ENCLB432EWX)

description:
https://www.encodeproject.org/experiments/ENCSR393LOP/
***************
biological replicate number: 4
technical replicate number: 2
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR393LOP
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB432EWX
size range: >200

value: ENCBS715QQC at ENCODE; https://www.encodeproject.org/ENCBS715QQC/


title: Hi-C from A549 (ENCLB807CQF)

description:
https://www.encodeproject.org/experiments/ENCSR393LOP/
***************
biological replicate number: 3
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR393LOP
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB807CQF
size range: >200

value: ENCBS311LQB at ENCODE; https://www.encodeproject.org/ENCBS311LQB/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Hi-C from A549 (ENCLB087UUL)

description:
https://www.encodeproject.org/experiments/ENCSR244BBG/
***************
biological replicate number: 3
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR244BBG
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB087UUL
size range: >200


title: ChIP-seq from A549 (ENCLB697IAO)

description:
https://www.encodeproject.org/experiments/ENCSR487EUI/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR487EUI
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB697IAO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS973LNL at ENCODE; https://www.encodeproject.org/ENCBS973LNL/


title: ChIP-seq from A549 (ENCLB261UBX)

description:
https://www.encodeproject.org/experiments/ENCSR487EUI/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR487EUI
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB261UBX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS475UJY at ENCODE; https://www.encodeproject.org/ENCBS475UJY/


title: ChIP-seq from A549 (ENCLB811HFD)

description:
https://www.encodeproject.org/experiments/ENCSR487EUI/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR487EUI
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB811HFD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS051YPR at ENCODE; https://www.encodeproject.org/ENCBS051YPR/


title: ChIP-seq from A549 (ENCLB969SDG)

description:
https://www.encodeproject.org/experiments/ENCSR491TAD/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR491TAD
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB969SDG
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS072GEK at ENCODE; https://www.encodeproject.org/ENCBS072GEK/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: Hi-C from A549 (ENCLB767BDI)

description:
https://www.encodeproject.org/experiments/ENCSR244BBG/
***************
biological replicate number: 4
technical replicate number: 1
description: Hi-C on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR244BBG
assay title: Hi-C
possible controls: ENCSR662QKG
encode release date: 2016-11-23
lab: Tim Reddy, Duke
library encode accession: ENCLB767BDI
size range: >200

value: immortalized cell line

value: ENCBS311NZY at ENCODE; https://www.encodeproject.org/ENCBS311NZY/


title: ChIP-seq from A549 (ENCLB302KTL)

description:
https://www.encodeproject.org/experiments/ENCSR535HFQ/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR535HFQ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB302KTL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS006JGY at ENCODE; https://www.encodeproject.org/ENCBS006JGY/


title: ChIP-seq from A549 (ENCLB637YBO)

description:
https://www.encodeproject.org/experiments/ENCSR483JJT/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR483JJT
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR325PXS
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB637YBO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 3 hours

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS372GEL at ENCODE; https://www.encodeproject.org/ENCBS372GEL/


title: ChIP-seq from A549 (ENCLB909XOV)

description:
https://www.encodeproject.org/experiments/ENCSR524UOX/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR524UOX
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB909XOV
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS875EKF at ENCODE; https://www.encodeproject.org/ENCBS875EKF/


title: ChIP-seq from A549 (ENCLB161LNA)

description:
https://www.encodeproject.org/experiments/ENCSR483JJT/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR483JJT
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR325PXS
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB161LNA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS897QKO at ENCODE; https://www.encodeproject.org/ENCBS897QKO/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB254QUK)

description:
https://www.encodeproject.org/experiments/ENCSR474DCX/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR474DCX
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB254QUK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: ENCBS831YRP at ENCODE; https://www.encodeproject.org/ENCBS831YRP/


title: ChIP-seq from A549 (ENCLB601DWX)

description:
https://www.encodeproject.org/experiments/ENCSR473CRE/
***************
biological replicate number: 2
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR473CRE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR711MVL
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB601DWX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS238JNS at ENCODE; https://www.encodeproject.org/ENCBS238JNS/


title: ChIP-seq from A549 (ENCLB614UTP)

description:
https://www.encodeproject.org/experiments/ENCSR473CRE/
***************
biological replicate number: 1
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR473CRE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR711MVL
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB614UTP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS907YTU at ENCODE; https://www.encodeproject.org/ENCBS907YTU/


title: ChIP-seq from A549 (ENCLB603GJA)

description:
https://www.encodeproject.org/experiments/ENCSR474DCX/
***************
biological replicate number: 3
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR474DCX
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB603GJA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS044GJG at ENCODE; https://www.encodeproject.org/ENCBS044GJG/


title: ChIP-seq from A549 (ENCLB123LXQ)

description:
https://www.encodeproject.org/experiments/ENCSR474DCX/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR474DCX
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR487EUI
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB123LXQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS317RWG at ENCODE; https://www.encodeproject.org/ENCBS317RWG/


title: ChIP-seq from A549 (ENCLB664LVK)

description:
https://www.encodeproject.org/experiments/ENCSR467GRT/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR467GRT
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB664LVK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS996IAL at ENCODE; https://www.encodeproject.org/ENCBS996IAL/


title: ChIP-seq from A549 (ENCLB252XLG)

description:
https://www.encodeproject.org/experiments/ENCSR467GRT/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR467GRT
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB252XLG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: Tim Reddy, Duke

value: ENCBS373POM at ENCODE; https://www.encodeproject.org/ENCBS373POM/


title: ChIP-seq from A549 (ENCLB816VGM)

description:
https://www.encodeproject.org/experiments/ENCSR467VXG/
***************
biological replicate number: 1
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR467VXG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR909GTY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB816VGM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS393PAL at ENCODE; https://www.encodeproject.org/ENCBS393PAL/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB855HSR)

description:
https://www.encodeproject.org/experiments/ENCSR467VXG/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR467VXG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR909GTY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB855HSR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS637CSP at ENCODE; https://www.encodeproject.org/ENCBS637CSP/


title: ChIP-seq from A549 (ENCLB066QWY)

description:
https://www.encodeproject.org/experiments/ENCSR467VXG/
***************
biological replicate number: 2
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR467VXG
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR909GTY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB066QWY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS691UVA at ENCODE; https://www.encodeproject.org/ENCBS691UVA/


title: ChIP-seq from A549 (ENCLB620EOP)

description:
https://www.encodeproject.org/experiments/ENCSR467GRT/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR467GRT
assay title: ChIP-seq
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB620EOP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS384DUN at ENCODE; https://www.encodeproject.org/ENCBS384DUN/


title: ChIP-seq from A549 (ENCLB451JAU)

description:
https://www.encodeproject.org/experiments/ENCSR447ZMS/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR447ZMS
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB451JAU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: ENCBS651RKS at ENCODE; https://www.encodeproject.org/ENCBS651RKS/


title: ChIP-seq from A549 (ENCLB261AYI)

description:
https://www.encodeproject.org/experiments/ENCSR462JVS/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR462JVS
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR317VER
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB261AYI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS198XRT at ENCODE; https://www.encodeproject.org/ENCBS198XRT/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB213KJO)

description:
https://www.encodeproject.org/experiments/ENCSR462JVS/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR462JVS
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR317VER
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB213KJO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS317YUF at ENCODE; https://www.encodeproject.org/ENCBS317YUF/


title: clf/swn-14

city: Alicante

first: Angel

last: Barco

address: Ramon y Cajal

department: Neuro Plasticity

country: Spain

institute: NeuroSciences Institute of Alicante CSIC

data_processing:
reads quality was checked with FastQC
adapters were eliminated cutting 12bp with trimmomatic v0.32
Reads were mapped to TAIR10 genome with tophat v2.0.10, default options
counts mapping in genes were counted in bam files using Htseq using the TAIR10.gff annotation
counts were further processed in R. Batch effect was corrected using the RUVseq package. Differential gene expression  analysis were performed in RUVseq-corrected counts with the package DESeq2
Genome_build: TAIR10
Supplementary_files_format_and_content: gene_count.tsv file generated with HTseq contain RNA counts in whole genes acording to TAIR10 annotation

organism: Arabidopsis thaliana

source_name: stem

growth_protocol: wt and mutant plants were grown in vitro in parallel at LD conditions for 14 days.

extract_protocol:
Samples were collected into RNAlater® at time 0 (control) and at the end of induction. RNA from shoot apical meristem region and axillary meristem regions (leaf bases), was isolated and DNAse I-treated using a MagJET Plant RNA Purification Kit
Libraries were prepared using TrueSeq RNA Library Preparation Kit v2 (Illumina) and quality verified using an Agilent DNA 1000 Kit

treatment_protocol: plants were grown on ½ strength MS including vitamins, 1g/l methyl ethane sulfonate, 1 % sucrose (w/v), 0.8% agar (w/v). Explants or intact seedlings were transferred onto MS plates with DMSO or 5 µM 2,4-D and cultivated under the same conditions for 55 hours.

tag: genotype

value: clf/swn

tag: biological replicate

tag: treatment

value: injury time 55h


title: clf/swn-15


title: clf/swn-12

value: auxin time 55h


title: clf/swn-17

value: Injury + Auxin time 55h


title: clf/swn-18


title: clf/swn-16


title: ChIP-seq from A549 (ENCLB322QVQ)

description:
https://www.encodeproject.org/experiments/ENCSR446SPT/
***************
biological replicate number: 1
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR446SPT
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR690JTW
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB322QVQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS689EJO at ENCODE; https://www.encodeproject.org/ENCBS689EJO/


title: clf/swn-13


title: ChIP-seq from A549 (ENCLB970UDK)

description:
https://www.encodeproject.org/experiments/ENCSR446SPT/
***************
biological replicate number: 2
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR446SPT
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR690JTW
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB970UDK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS473QAB at ENCODE; https://www.encodeproject.org/ENCBS473QAB/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: clf/swn-11


title: ChIP-seq from A549 (ENCLB547RLX)

description:
https://www.encodeproject.org/experiments/ENCSR428DFL/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR428DFL
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR549SVK
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB547RLX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS327IUO at ENCODE; https://www.encodeproject.org/ENCBS327IUO/


title: ChIP-seq from A549 (ENCLB173GCO)

description:
https://www.encodeproject.org/experiments/ENCSR447ZMS/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR447ZMS
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB173GCO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: 58 year

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS844USI at ENCODE; https://www.encodeproject.org/ENCBS844USI/


title: clf/swn-10

value: clf/swn


title: ChIP-seq from A549 (ENCLB790LAP)

description:
https://www.encodeproject.org/experiments/ENCSR425MXK/
***************
biological replicate number: 3
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR425MXK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB790LAP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS496OVY at ENCODE; https://www.encodeproject.org/ENCBS496OVY/


title: clf/swn-7

value: mock control time 55h


title: ChIP-seq from A549 (ENCLB597IVD)

description:
https://www.encodeproject.org/experiments/ENCSR425MXK/
***************
biological replicate number: 1
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR425MXK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB597IVD
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: Tim Reddy, Duke

value: ENCBS107TAZ at ENCODE; https://www.encodeproject.org/ENCBS107TAZ/


title: ChIP-seq from A549 (ENCLB622GVR)

description:
https://www.encodeproject.org/experiments/ENCSR447ZMS/
***************
biological replicate number: 3
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR447ZMS
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB622GVR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS296DQU at ENCODE; https://www.encodeproject.org/ENCBS296DQU/


title: DNase-seq from A549 (ENCLB970ETW)

description:
https://www.encodeproject.org/experiments/ENCSR565WPR/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR565WPR
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB970ETW

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS938LTP at ENCODE; https://www.encodeproject.org/ENCBS938LTP/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB014ZJQ)

description:
https://www.encodeproject.org/experiments/ENCSR425MXK/
***************
biological replicate number: 2
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR425MXK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB014ZJQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS584DBQ at ENCODE; https://www.encodeproject.org/ENCBS584DBQ/


title: clf/swn-8


title: clf/swn-5

value: control time 0


title: clf/swn-6


title: ChIP-seq from A549 (ENCLB007WRS)

description:
https://www.encodeproject.org/experiments/ENCSR424JOE/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR424JOE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR887SZF
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB007WRS
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: ENCBS518WHI at ENCODE; https://www.encodeproject.org/ENCBS518WHI/


title: ChIP-seq from A549 (ENCLB710HAA)

description:
https://www.encodeproject.org/experiments/ENCSR419TWL/
***************
biological replicate number: 2
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR419TWL
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB710HAA
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 2 hours

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS765UHA at ENCODE; https://www.encodeproject.org/ENCBS765UHA/


title: ChIP-seq from A549 (ENCLB777JVH)

description:
https://www.encodeproject.org/experiments/ENCSR410BCN/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR410BCN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR838ZAU
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB777JVH
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS176HWE at ENCODE; https://www.encodeproject.org/ENCBS176HWE/


title: ChIP-seq from A549 (ENCLB395PKP)

description:
https://www.encodeproject.org/experiments/ENCSR419TWL/
***************
biological replicate number: 1
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR419TWL
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB395PKP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS206NTN at ENCODE; https://www.encodeproject.org/ENCBS206NTN/


title: clf/swn-3

value: clf/swn


title: Col-16

value: Injury + Auxin time 55h


title: Col-15


title: clf/swn-2


title: DNase-seq from A549 (ENCLB297GYV)

description:
https://www.encodeproject.org/experiments/ENCSR406EMB/
***************
biological replicate number: 4
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR406EMB
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB297GYV

value: immortalized cell line

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS875EJK at ENCODE; https://www.encodeproject.org/ENCBS875EJK/


title: ChIP-seq from A549 (ENCLB572IFM)

description:
https://www.encodeproject.org/experiments/ENCSR410BCN/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours.
experiment encode accession: ENCSR410BCN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR838ZAU
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB572IFM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS096ODB at ENCODE; https://www.encodeproject.org/ENCBS096ODB/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: clf/swn-1

value: control time 0


title: Col-17


title: clf/swn-9

value: mock control time 55h


title: Col-14

value: injury time 55h


title: Col-13


title: ChIP-seq from A549 (ENCLB296MKR)

description:
https://www.encodeproject.org/experiments/ENCSR404OLV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR404OLV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR274VPI
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB296MKR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:8; duration_units:hour;

value: 58 year

value: ENCBS246IJP at ENCODE; https://www.encodeproject.org/ENCBS246IJP/


title: Col-12


title: ChIP-seq from A549 (ENCLB280IDO)

description:
https://www.encodeproject.org/experiments/ENCSR404OLV/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me1 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours.
experiment encode accession: ENCSR404OLV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR274VPI
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB280IDO
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS898FLP at ENCODE; https://www.encodeproject.org/ENCBS898FLP/


title: ChIP-seq from A549 (ENCLB542XVN)

description:
https://www.encodeproject.org/experiments/ENCSR385RUW/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR385RUW
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR325PXS
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB542XVN
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS901YZG at ENCODE; https://www.encodeproject.org/ENCBS901YZG/


title: ChIP-seq from A549 (ENCLB671IEE)

description:
https://www.encodeproject.org/experiments/ENCSR385RUW/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR385RUW
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR325PXS
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB671IEE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: Tim Reddy, Duke

value: ENCBS780PIR at ENCODE; https://www.encodeproject.org/ENCBS780PIR/


title: ChIP-seq from A549 (ENCLB140AIW)

description:
https://www.encodeproject.org/experiments/ENCSR424JOE/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR424JOE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR887SZF
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB140AIW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS593PHP at ENCODE; https://www.encodeproject.org/ENCBS593PHP/


title: Col-11

value: auxin time 55h


title: DNase-seq from A549 (ENCLB931SEP)

description:
https://www.encodeproject.org/experiments/ENCSR406EMB/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR406EMB
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB931SEP

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS896RCE at ENCODE; https://www.encodeproject.org/ENCBS896RCE/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: DNase-seq from A549 (ENCLB471SDC)

description:
https://www.encodeproject.org/experiments/ENCSR384KCZ/
***************
biological replicate number: 4
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR384KCZ
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB471SDC

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS691ANI at ENCODE; https://www.encodeproject.org/ENCBS691ANI/


title: clf/swn-4

value: clf/swn

value: control time 0


title: Col-8

value: mock control time 55h


title: Col-7


title: Col-10


title: Col-6


title: Col-9


title: Col-4


title: ChIP-seq from A549 (ENCLB818SKM)

description:
https://www.encodeproject.org/experiments/ENCSR375BUB/
***************
biological replicate number: 3
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR375BUB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB818SKM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: 58 year

value: male

value: ENCBS814SSA at ENCODE; https://www.encodeproject.org/ENCBS814SSA/


title: Col-5


title: Col-3


title: polyA mRNA RNA-seq from A549 (ENCLB575NVN)

description:
https://www.encodeproject.org/experiments/ENCSR385TFN/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR385TFN
assay title: polyA mRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR632DQP
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB575NVN
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

value: immortalized cell line

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS731OAC at ENCODE; https://www.encodeproject.org/ENCBS731OAC/


title: Col-2


title: ChIP-seq from A549 (ENCLB882UAK)

description:
https://www.encodeproject.org/experiments/ENCSR356YXW/
***************
biological replicate number: 2
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR356YXW
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB882UAK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS033HGM at ENCODE; https://www.encodeproject.org/ENCBS033HGM/


title: ChIP-seq from A549 (ENCLB067ZUE)

description:
https://www.encodeproject.org/experiments/ENCSR356YXW/
***************
biological replicate number: 3
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR356YXW
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB067ZUE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS639YSC at ENCODE; https://www.encodeproject.org/ENCBS639YSC/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB725XLZ)

description:
https://www.encodeproject.org/experiments/ENCSR344ERJ/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR344ERJ
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB725XLZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS328YSW at ENCODE; https://www.encodeproject.org/ENCBS328YSW/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB503XRL)

description:
https://www.encodeproject.org/experiments/ENCSR354ERB/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR354ERB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR325PXS
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB503XRL
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS099QUK at ENCODE; https://www.encodeproject.org/ENCBS099QUK/


title: ChIP-seq from A549 (ENCLB507KDK)

description:
https://www.encodeproject.org/experiments/ENCSR350EFV/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR350EFV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR325PXS
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB507KDK
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: male

value: ENCBS714CHO at ENCODE; https://www.encodeproject.org/ENCBS714CHO/


title: DNase-seq from A549 (ENCLB123BJO)

description:
https://www.encodeproject.org/experiments/ENCSR347CEH/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR347CEH
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB123BJO

value: immortalized cell line

value: Tim Reddy, Duke

value: ENCBS232SYQ at ENCODE; https://www.encodeproject.org/ENCBS232SYQ/


title: ChIP-seq from A549 (ENCLB985EIR)

description:
https://www.encodeproject.org/experiments/ENCSR356YXW/
***************
biological replicate number: 1
technical replicate number: 1
description: HES2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
experiment encode accession: ENCSR356YXW
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR467GRT
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB985EIR
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:30; duration_units:minute;

value: ENCBS263BGQ at ENCODE; https://www.encodeproject.org/ENCBS263BGQ/


title: ChIP-seq from A549 (ENCLB225IBG)

description:
https://www.encodeproject.org/experiments/ENCSR344ERJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR344ERJ
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB225IBG
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS875WSM at ENCODE; https://www.encodeproject.org/ENCBS875WSM/


title: ChIP-seq from A549 (ENCLB706DFW)

description:
https://www.encodeproject.org/experiments/ENCSR340NAL/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR340NAL
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR887SZF
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB706DFW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS503NHT at ENCODE; https://www.encodeproject.org/ENCBS503NHT/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: Col-1

value: control time 0


title: ChIP-seq from A549 (ENCLB822EKC)

description:
https://www.encodeproject.org/experiments/ENCSR330IJE/
***************
biological replicate number: 2
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR330IJE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB822EKC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS150LLO at ENCODE; https://www.encodeproject.org/ENCBS150LLO/


title: DNase-seq from A549 (ENCLB699SEB)

description:
https://www.encodeproject.org/experiments/ENCSR384KCZ/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR384KCZ
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB699SEB

value: ENCBS606CKR at ENCODE; https://www.encodeproject.org/ENCBS606CKR/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB761BCB)

description:
https://www.encodeproject.org/experiments/ENCSR330IJE/
***************
biological replicate number: 3
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR330IJE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB761BCB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: 58 year

value: ENCBS181LQF at ENCODE; https://www.encodeproject.org/ENCBS181LQF/


title: ChIP-seq from A549 (ENCLB307EED)

description:
https://www.encodeproject.org/experiments/ENCSR330IJE/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR330IJE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB307EED
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: Tim Reddy, Duke

value: ENCBS159MAK at ENCODE; https://www.encodeproject.org/ENCBS159MAK/


title: ChIP-seq from A549 (ENCLB376DZV)

description:
https://www.encodeproject.org/experiments/ENCSR358ELZ/
***************
biological replicate number: 3
technical replicate number: 1
description: EP300 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR358ELZ
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB376DZV
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS388ADX at ENCODE; https://www.encodeproject.org/ENCBS388ADX/


title: polyA mRNA RNA-seq from A549 (ENCLB617ROP)

description:
https://www.encodeproject.org/experiments/ENCSR326PTW/
***************
biological replicate number: 4
technical replicate number: 1
description: mRNA-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
experiment encode accession: ENCSR326PTW
assay title: polyA mRNA RNA-seq
assembly: GRCh38
possible controls: ENCSR632DQP
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB617ROP
size range: >200
spikeins used: /references/ENCSR866KGS/
nucleic acid starting quantity: 1
nucleic acid starting quantity units: µg

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:4; duration_units:hour;

value: ENCBS070TPK at ENCODE; https://www.encodeproject.org/ENCBS070TPK/


title: ChIP-seq from A549 (ENCLB050OJT)

description:
https://www.encodeproject.org/experiments/ENCSR325PXS/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR325PXS
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB050OJT
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS861FXN at ENCODE; https://www.encodeproject.org/ENCBS861FXN/


title: ChIP-seq from A549 (ENCLB967LLP)

description:
https://www.encodeproject.org/experiments/ENCSR375BUB/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 6 hours.
experiment encode accession: ENCSR375BUB
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR608QCS
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB967LLP
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:6; duration_units:hour;

value: ENCBS081GHS at ENCODE; https://www.encodeproject.org/ENCBS081GHS/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB224DFY)

description:
https://www.encodeproject.org/experiments/ENCSR317VER/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR317VER
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB224DFY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS507SWE at ENCODE; https://www.encodeproject.org/ENCBS507SWE/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB951OXS)

description:
https://www.encodeproject.org/experiments/ENCSR310TYO/
***************
biological replicate number: 3
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR310TYO
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB951OXS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

source_name: Homo sapiens A549 immortalized cell line treated with 100 nM dexamethasone for 10 hours

value: immortalized cell line

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:10; duration_units:hour;

value: ENCBS805BJW at ENCODE; https://www.encodeproject.org/ENCBS805BJW/


title: ChIP-seq from A549 (ENCLB058XWO)

description:
https://www.encodeproject.org/experiments/ENCSR310TYO/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 10 hours.
experiment encode accession: ENCSR310TYO
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB058XWO
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: ENCBS392TVW at ENCODE; https://www.encodeproject.org/ENCBS392TVW/


title: ChIP-seq from A549 (ENCLB843ZFC)

description:
https://www.encodeproject.org/experiments/ENCSR991VVW/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR991VVW
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR560DEL
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB843ZFC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS282BWY at ENCODE; https://www.encodeproject.org/ENCBS282BWY/


title: ChIP-seq from A549 (ENCLB863LKG)

description:
https://www.encodeproject.org/experiments/ENCSR991RJM/
***************
biological replicate number: 3
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR991RJM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR701MJQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB863LKG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS563TDU at ENCODE; https://www.encodeproject.org/ENCBS563TDU/


title: ChIP-seq from A549 (ENCLB703MPM)

description:
https://www.encodeproject.org/experiments/ENCSR991VVW/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR991VVW
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR560DEL
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB703MPM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS622VVI at ENCODE; https://www.encodeproject.org/ENCBS622VVI/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB543LCI)

description:
https://www.encodeproject.org/experiments/ENCSR299ILN/
***************
biological replicate number: 3
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR299ILN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB543LCI
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: male

value: ENCBS998XMJ at ENCODE; https://www.encodeproject.org/ENCBS998XMJ/


title: ChIP-seq from A549 (ENCLB298TDQ)

description:
https://www.encodeproject.org/experiments/ENCSR991RJM/
***************
biological replicate number: 2
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR991RJM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR701MJQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB298TDQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS516WZJ at ENCODE; https://www.encodeproject.org/ENCBS516WZJ/


title: ChIP-seq from A549 (ENCLB116OMZ)

description:
https://www.encodeproject.org/experiments/ENCSR299MNA/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K9me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR299MNA
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR627RBH
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB116OMZ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS681JBN at ENCODE; https://www.encodeproject.org/ENCBS681JBN/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB784KEA)

description:
https://www.encodeproject.org/experiments/ENCSR317VER/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR317VER
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB784KEA
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: ENCBS597DCL at ENCODE; https://www.encodeproject.org/ENCBS597DCL/


title: ChIP-seq from A549 (ENCLB471JCX)

description:
https://www.encodeproject.org/experiments/ENCSR991RJM/
***************
biological replicate number: 1
technical replicate number: 1
description: cJun ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR991RJM
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR701MJQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB471JCX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUN

value: adult

value: ENCBS809MNA at ENCODE; https://www.encodeproject.org/ENCBS809MNA/


title: ChIP-seq from A549 (ENCLB067YRU)

description:
https://www.encodeproject.org/experiments/ENCSR299ILN/
***************
biological replicate number: 1
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR299ILN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB067YRU
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:1; duration_units:hour; UCSC-ENCODE-cv:DEX_100nM;

value: ENCBS971NYL at ENCODE; https://www.encodeproject.org/ENCBS971NYL/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB144PAB)

description:
https://www.encodeproject.org/experiments/ENCSR876UZD/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR876UZD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR565ZHQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB144PAB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CTCF

value: male

value: ENCBS502YOK at ENCODE; https://www.encodeproject.org/ENCBS502YOK/


title: ChIP-seq from A549 (ENCLB264JOG)

description:
https://www.encodeproject.org/experiments/ENCSR299ILN/
***************
biological replicate number: 2
technical replicate number: 1
description: CEBPB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours.
experiment encode accession: ENCSR299ILN
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR611VYO
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB264JOG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CEBPB

value: immortalized cell line

value: ENCBS793JQQ at ENCODE; https://www.encodeproject.org/ENCBS793JQQ/


title: DNase-seq from A549 (ENCLB130MQZ)

description:
https://www.encodeproject.org/experiments/ENCSR294XUZ/
***************
biological replicate number: 5
technical replicate number: 1
description: DNase-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR294XUZ
assay title: DNase-seq
assembly: GRCh38
possible controls: ENCSR136DNA
encode release date: 2016-05-05
lab: Tim Reddy, Duke
library encode accession: ENCLB130MQZ

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS497NSM at ENCODE; https://www.encodeproject.org/ENCBS497NSM/


title: ChIP-seq from A549 (ENCLB720ZNQ)

description:
https://www.encodeproject.org/experiments/ENCSR876UZD/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR876UZD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR565ZHQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB720ZNQ
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS472FTV at ENCODE; https://www.encodeproject.org/ENCBS472FTV/


title: ChIP-seq from A549 (ENCLB567SIB)

description:
https://www.encodeproject.org/experiments/ENCSR287FWE/
***************
biological replicate number: 1
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR287FWE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR549SVK
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB567SIB
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS106FRF at ENCODE; https://www.encodeproject.org/ENCBS106FRF/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB944ANS)

description:
https://www.encodeproject.org/experiments/ENCSR288EPV/
***************
biological replicate number: 2
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR288EPV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR005CRY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB944ANS
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: ENCBS644IJZ at ENCODE; https://www.encodeproject.org/ENCBS644IJZ/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB591HTX)

description:
https://www.encodeproject.org/experiments/ENCSR288EPV/
***************
biological replicate number: 1
technical replicate number: 1
description: BCL3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR288EPV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR005CRY
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB591HTX
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS774BEL at ENCODE; https://www.encodeproject.org/ENCBS774BEL/


title: ChIP-seq from A549 (ENCLB088CNW)

description:
https://www.encodeproject.org/experiments/ENCSR876UZD/
***************
biological replicate number: 3
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR876UZD
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR565ZHQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB088CNW
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CTCF

value: ENCBS343SXZ at ENCODE; https://www.encodeproject.org/ENCBS343SXZ/


title: ChIP-seq from A549 (ENCLB901RHY)

description:
https://www.encodeproject.org/experiments/ENCSR871NPV/
***************
biological replicate number: 3
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR871NPV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR266YIS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB901RHY
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: immortalized cell line

value: ENCBS438XGI at ENCODE; https://www.encodeproject.org/ENCBS438XGI/


title: ChIP-seq from A549 (ENCLB289NAB)

description:
https://www.encodeproject.org/experiments/ENCSR871NPV/
***************
biological replicate number: 1
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR871NPV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR266YIS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB289NAB
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: 58 year

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS543NSF at ENCODE; https://www.encodeproject.org/ENCBS543NSF/


title: ChIP-seq from A549 (ENCLB010VEN)

description:
https://www.encodeproject.org/experiments/ENCSR325PXS/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR325PXS
assay title: ChIP-seq
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB010VEN
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Control

value: adult

value: ENCBS787WXX at ENCODE; https://www.encodeproject.org/ENCBS787WXX/


title: ChIP-seq from A549 (ENCLB636YYM)

description:
https://www.encodeproject.org/experiments/ENCSR287FWE/
***************
biological replicate number: 3
technical replicate number: 1
description: NR3C1 (GR) ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
experiment encode accession: ENCSR287FWE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR549SVK
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB636YYM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:12; duration_units:hour;

value: ENCBS685EHX at ENCODE; https://www.encodeproject.org/ENCBS685EHX/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023


title: ChIP-seq from A549 (ENCLB898RWE)

description:
https://www.encodeproject.org/experiments/ENCSR851SOK/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR851SOK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR266YIS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB898RWE
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS153NPL at ENCODE; https://www.encodeproject.org/ENCBS153NPL/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/


title: ChIP-seq from A549 (ENCLB032ZJF)

description:
https://www.encodeproject.org/experiments/ENCSR285FZP/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR285FZP
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR317VER
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB032ZJF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:7; duration_units:hour;

value: ENCBS787TLC at ENCODE; https://www.encodeproject.org/ENCBS787TLC/


title: ChIP-seq from A549 (ENCLB441DDN)

description:
https://www.encodeproject.org/experiments/ENCSR285FZP/
***************
biological replicate number: 3
technical replicate number: 1
description: H3K4me3 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 7 hours.
experiment encode accession: ENCSR285FZP
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR317VER
encode release date: 2016-07-21
lab: Tim Reddy, Duke
library encode accession: ENCLB441DDN
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: immortalized cell line

value: ENCBS021JVU at ENCODE; https://www.encodeproject.org/ENCBS021JVU/


title: ChIP-seq from A549 (ENCLB676ALF)

description:
https://www.encodeproject.org/experiments/ENCSR851SOK/
***************
biological replicate number: 2
technical replicate number: 1
description: CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR851SOK
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR266YIS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB676ALF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: CTCF

value: 58 year

value: ENCBS190JXX at ENCODE; https://www.encodeproject.org/ENCBS190JXX/


title: ChIP-seq from A549 (ENCLB796FLG)

description:
https://www.encodeproject.org/experiments/ENCSR274WRI/
***************
biological replicate number: 1
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR274WRI
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB796FLG
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: Tim Reddy, Duke

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:2; duration_units:hour;

value: ENCBS776TKS at ENCODE; https://www.encodeproject.org/ENCBS776TKS/


title: ChIP-seq from A549 (ENCLB011WYM)

description:
https://www.encodeproject.org/experiments/ENCSR274WRI/
***************
biological replicate number: 3
technical replicate number: 1
description: FOSL2 ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 2 hours.
experiment encode accession: ENCSR274WRI
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR147APP
encode release date: 2016-10-27
lab: Tim Reddy, Duke
library encode accession: ENCLB011WYM
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: adult

value: ENCBS434SIS at ENCODE; https://www.encodeproject.org/ENCBS434SIS/


title: ChIP-seq from A549 (ENCLB097XRF)

description:
https://www.encodeproject.org/experiments/ENCSR814UWE/
***************
biological replicate number: 1
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR814UWE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR565ZHQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB097XRF
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: JUNB

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:5; duration_units:hour;

value: ENCBS588OSJ at ENCODE; https://www.encodeproject.org/ENCBS588OSJ/


title: ChIP-seq from A549 (ENCLB062JSN)

description:
https://www.encodeproject.org/experiments/ENCSR814UWE/
***************
biological replicate number: 3
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 5 hours.
experiment encode accession: ENCSR814UWE
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR565ZHQ
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB062JSN
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: male

value: ENCBS509YOS at ENCODE; https://www.encodeproject.org/ENCBS509YOS/


title: ChIP-seq from A549 (ENCLB851ERC)

description:
https://www.encodeproject.org/experiments/ENCSR871NPV/
***************
biological replicate number: 2
technical replicate number: 1
description: JunB ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 3 hours.
experiment encode accession: ENCSR871NPV
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR266YIS
encode release date: 2016-12-20
lab: Tim Reddy, Duke
library encode accession: ENCLB851ERC
size range: >200
nucleic acid starting quantity: 7
nucleic acid starting quantity units: ng

value: treatment_term_id:CHEBI:41879; treatment_term_name:dexamethasone; treatment_type:chemical; duration:3; duration_units:hour;

value: ENCBS930DNO at ENCODE; https://www.encodeproject.org/ENCBS930DNO/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/