title: ChIPseq_FLAG_TX1072_WT_0h_Dox_Rep1

city: Paris

first: Aurélie

last: Bousard

address: 26, rue d'Ulm

institute: Institut Curie

data_processing:
Adapters and low quality bases (<Q20) have been removed with TrimGalore (v0.4.0) (Krueger) and Cutadapt (1.8.2) (Martin et al, 2011).
An ‘N-masked” genome has been generated with SNPSplit (0.3.2) {Krueger, 2016 #2319} which is a version of the mouse reference genome mm10 where all the polymorphic sites for the hybrid strain Mus musculus CAST/EiJ and Mus musculus C57BL/6 are masked by ambiguity nucleobase ‘N’. For all samples, reads were then mapped to the ‘N-masked” genome with Bowtie2 (2.2.5) (Langmead B and Salzberg S, 2012) with options [KOend-to-end -N1 -q]
Duplicates were discarded with Picard MarkDuplicates (1.65) with options [REMOVE_DUPLICATES=true] (DePristo et al., 2011) and reads mapped on blacklisted regions from Encode Consortium (Dunham et al., 2012) were discarded.
SNPSplit (0.3.2) {Krueger, 2016 #2319} was then used to generate allele-specific BAM files by separating the alignment into two distinct alleles (CAST and B6) based on SNPs information downloaded on Sanger {Keane, 2011 #1133}.
Bigwig files were created with bedtools genomeCoverageBed (2.25.0) (Quinlan and Hall, 2010), using a scale factor calculated on the total library (10.000.000/total reads) for both allele specific bigwigs, and loaded on UCSC genome browser (Kent et al., 2002).
Genome_build: mm10
Supplementary_files_format_and_content: bigwig

growth_protocol: Hdac3 Flag/Flag clones were grown in 145mm plate format. After 24hrs of culture in DMEM/15%FCS+LIF+2i cell the medium was supplemented with doxycycline (1ug/ml). Cells were then collected at regular intervals.

extract_protocol:
Cells were initially fixed in 1.5 mM ethylene glycolbis [succinimidyl succinate] (EGS) for 30 min, next 2% formaldehyde was added and further incubated for 10 min. After rinsing twice in PBS, cells were scraped and pellets directly used for ChIP.
Fixed pellets were lysed in 6 mL Nuclear Lysis Buffer (0.5% Triton X-100, 0.1 M sucrose, 5 mM MgCl2, 1 mM EDTA, 10 mM Tris-HCl pH 8.0, 1x Protease Inhibitors) for 10min on ice and dounce-homogenized. Nuclei were pelleted and resuspended in 0.9 mL Lysis Buffer (1 mM EDTA, 0.5 mM EGTA, 10 mM Tris pH 8.0, 0.5% N-Lauroylsarcosine, 1x Protease Inhibitors). Chromatin was sheared using a BioruptorPlus (Diagenode) set to high for 30 cycles. Unsonicated chromatin was removed by centrifugation. Supernatant was diluted with 3.6 mL of Dilution Buffer (1.25% Triton, 0.125% sodium deoxycholate, 6 mM EDTA, 10 mM Tris-HCL pH8.0, 1x Protease Inhibitors) and antibody coated beads were added (per IP: 10 uL of anti-FLAG antibody). Samples were left rotating overnight at 4°C.
Following day beads were magnet-separated and washed 5-times with LiCl buffer (0.50 M LiCl; 1% NP40; 1.1% sodium deoxycholate; 1 mM EDTA; 10 mM Tris-HCl pH 8.1) and 5 times with High Salt Buffer (0.1% SDS; 1% Triton X-100; 2 mM EDTA; 20 mM Tris-HCl, pH 8.1; 1M NaCl; 0.1% sodium deoxycholate). Each wash was performed for 10 min on a rotating wheel at 4°C. Prior to elution all samples were rinsed once in TE. ChIP-DNA was eluted in ProtK-Digestion Buffer (20mM HEPES; 1mM EDTA; 0.5% SDS; 0.8mg/mL Proteinase K) for 15min at 56°C. Beads were separated and the supernatant was further digested for another 2hrs at 56°C and then decrosslinked for 4hrs at 68°C. DNA was isolated using AMPure XP beads. Libraries were prepared using Ovation Ultralow Library System V2 following suppliers protocol. Samples were sequenced with HiSeq2500 using PE100 mode.

value: CAST / C57BL/6

tag: genotype

value: WT

tag: condition

value: 0h Dox

tag: replicate

tag: assay

value: ChIP-seq

tag: target

value: FLAG

tag: antibody


title: ChIPseq_FLAG_TX1072_Hdac3-AID-FLAG_24h_Dox_Rep1

status: Public on Jan 01 2019

type: SRA

country: France

library_source: genomic

molecule: genomic DNA

organism: Mus musculus

tag: strain

tag: cell line

value: 24h Dox


title: normal.ct-317

city: La Jolla

first: Kang

last: Zhang

address: 9500 Gilman Dr

country: USA

institute: UCSD

description: cell-free DNA

data_processing:
unique molecular identifiers were extracted from each read using custom script
reads were adaptor and quality trimmed using Trim-galore and Cutadapt 1.4.1 with parameters -e 0.1 -q 20 -O 1
BisReadMapper1.3 (D.Diep, K.Zhang) using Bowtie2 was used to align reads to in-silico bisulfite-converted genome sequence
C and Ts were extracted from reads at the targeted positions using only reads with unique identifiers and methylation frequencies were calculated using custom scripts (BamExtractor, D.Diep, K.Zhang)
Genome_build: hg19
Supplementary_files_format_and_content: text file containing beta values and numbers of C and T for all samples at all analyzed CpG markers

organism: Homo sapiens

source_name: blood serum

extract_protocol:
cfDNA extraction from 1.5 ml of serum samples was performed using QIAamp cfDNA Kit (Qiagen) according to manufacturer’s recommendations
10 ng of cfDNA was bisulfite-converted using EZ DNA Methylation-Lightning™ Kit (Zymo). Bis-DNA specific "padlock" probes (molecular inversion probes, MIPS) were used to capture genomic regions and provide adaptors for NGS library construction. Nextera-XT compatible barcoding primers were used to amplify DNA for sequencing. Library (~300bp) was purified using AMPure beads.
custom-made libraries were sequenced on HiSeq2500 using 150PE reads

tag: cell type

value: blood serum

tag: group

value: healthy control


title: normal.ct-316

description: cell-free DNA


title: normal.ct-310

description: cell-free DNA


title: ChIPseq_FLAG_TX1072_Hdac3-AID-FLAG_0h_Dox_Rep1


title: ChIPseq_FLAG_TX1072_Hdac3-AID-FLAG_8h_Dox_Rep1

value: 8h Dox


title: ChIPseq_FLAG_TX1072_Hdac3-AID-FLAG_4h_Dox_Rep1

value: 4h Dox


title: normal.ct-307

description: cell-free DNA


title: normal.ct-309

description: cell-free DNA


title: normal.ct-297

description: cell-free DNA


title: normal.ct-304

description: cell-free DNA


title: normal.ct-306

description: cell-free DNA


title: normal.ct-300

description: cell-free DNA


title: normal.ct-305

description: cell-free DNA


title: normal.ct-301

description: cell-free DNA


title: normal.ct-298

description: cell-free DNA


title: normal.ct-296

description: cell-free DNA


title: normal.ct-295

description: cell-free DNA


title: normal.ct-294

description: cell-free DNA


title: normal.ct-293

description: cell-free DNA


title: normal.ct-299

description: cell-free DNA


title: normal.ct-312

description: cell-free DNA


title: normal.ct-291

description: cell-free DNA


title: normal.ct-290

description: cell-free DNA


title: normal.ct-311

description: cell-free DNA


title: normal.ct-287

description: cell-free DNA


title: normal.ct-289

description: cell-free DNA


title: normal.ct-292

description: cell-free DNA


title: normal.ct-288

description: cell-free DNA


title: normal.ct-308

description: cell-free DNA


title: normal.ct-283

description: cell-free DNA


title: normal.ct-303

description: cell-free DNA


title: normal.ct-284

description: cell-free DNA


title: normal.ct-282

description: cell-free DNA


title: normal.ct-302

description: cell-free DNA


title: normal.ct-281

description: cell-free DNA


title: normal.ct-286

description: cell-free DNA


title: normal.ct-285

description: cell-free DNA


title: normal.ct-280

description: cell-free DNA


title: normal.ct-278

description: cell-free DNA


title: normal.ct-275

description: cell-free DNA


title: normal.ct-276

description: cell-free DNA


title: normal.ct-272

description: cell-free DNA


title: normal.ct-277

description: cell-free DNA


title: normal.ct-271

description: cell-free DNA


title: normal.ct-273

description: cell-free DNA


title: normal.ct-270

description: cell-free DNA


title: normal.ct-269

description: cell-free DNA


title: normal.ct-266

description: cell-free DNA


title: normal.ct-267

description: cell-free DNA


title: normal.ct-265

description: cell-free DNA


title: normal.ct-268

description: cell-free DNA


title: normal.ct-263

description: cell-free DNA


title: normal.ct-260

description: cell-free DNA


title: normal.ct-261

description: cell-free DNA


title: normal.ct-259

description: cell-free DNA


title: normal.ct-264

description: cell-free DNA


title: normal.ct-256

description: cell-free DNA


title: normal.ct-258

description: cell-free DNA


title: normal.ct-257

description: cell-free DNA


title: normal.ct-254

description: cell-free DNA


title: normal.ct-255

description: cell-free DNA


title: normal.ct-251

description: cell-free DNA


title: normal.ct-253

description: cell-free DNA


title: normal.ct-274

description: cell-free DNA


title: normal.ct-250

description: cell-free DNA


title: normal.ct-252

description: cell-free DNA


title: normal.ct-248

description: cell-free DNA


title: normal.ct-246

description: cell-free DNA


title: normal.ct-243

description: cell-free DNA


title: normal.ct-247

description: cell-free DNA


title: normal.ct-245

description: cell-free DNA


title: normal.ct-244

description: cell-free DNA


title: normal.ct-242

description: cell-free DNA


title: normal.ct-240

description: cell-free DNA


title: normal.ct-239

description: cell-free DNA


title: normal.ct-238

description: cell-free DNA


title: normal.ct-235

description: cell-free DNA


title: normal.ct-237

description: cell-free DNA


title: normal.ct-236

description: cell-free DNA


title: normal.ct-232

description: cell-free DNA


title: normal.ct-229

description: cell-free DNA


title: normal.ct-233

description: cell-free DNA


title: normal.ct-226

description: cell-free DNA


title: normal.ct-249

description: cell-free DNA


title: normal.ct-227

description: cell-free DNA


title: normal.ct-225

description: cell-free DNA


title: normal.ct-222

description: cell-free DNA


title: normal.ct-230

description: cell-free DNA


title: normal.ct-262

description: cell-free DNA


title: normal.ct-228

description: cell-free DNA


title: normal.ct-218

description: cell-free DNA


title: normal.ct-216

description: cell-free DNA


title: normal.ct-217

description: cell-free DNA


title: normal.ct-224

description: cell-free DNA


title: normal.ct-215

description: cell-free DNA


title: normal.ct-223

description: cell-free DNA


title: normal.ct-220

description: cell-free DNA


title: normal.ct-210

description: cell-free DNA


title: normal.ct-231

description: cell-free DNA


title: normal.ct-219

description: cell-free DNA


title: normal.ct-234

description: cell-free DNA


title: normal.ct-214

description: cell-free DNA


title: normal.ct-208

description: cell-free DNA


title: normal.ct-203

description: cell-free DNA


title: normal.ct-206

description: cell-free DNA


title: normal.ct-205

description: cell-free DNA


title: normal.ct-213

description: cell-free DNA


title: normal.ct-207

description: cell-free DNA


title: normal.ct-202

description: cell-free DNA


title: normal.ct-209

description: cell-free DNA


title: normal.ct-204

description: cell-free DNA


title: normal.ct-241

description: cell-free DNA


title: normal.ct-201

description: cell-free DNA


title: normal.ct-221

description: cell-free DNA


title: normal.ct-200

description: cell-free DNA


title: normal.ct-199

description: cell-free DNA


title: normal.ct-198

description: cell-free DNA


title: normal.ct-197

description: cell-free DNA


title: normal.ct-195

description: cell-free DNA


title: normal.ct-191

description: cell-free DNA


title: normal.ct-192

description: cell-free DNA


title: normal.ct-189

description: cell-free DNA


title: normal.ct-196

description: cell-free DNA


title: normal.ct-193

description: cell-free DNA


title: normal.ct-211

description: cell-free DNA


title: normal.ct-212

description: cell-free DNA


title: normal.ct-194

description: cell-free DNA


title: normal.ct-188

description: cell-free DNA


title: normal.ct-184

description: cell-free DNA


title: normal.ct-186

description: cell-free DNA


title: normal.ct-187

description: cell-free DNA


title: normal.ct-185

description: cell-free DNA


title: normal.ct-183

description: cell-free DNA


title: normal.ct-190

description: cell-free DNA


title: normal.ct-181

description: cell-free DNA


title: normal.ct-182

description: cell-free DNA


title: normal.ct-180

description: cell-free DNA


title: normal.ct-179

description: cell-free DNA


title: normal.ct-178

description: cell-free DNA


title: normal.ct-174

description: cell-free DNA


title: normal.ct-173

description: cell-free DNA


title: normal.ct-169

description: cell-free DNA


title: normal.ct-170

description: cell-free DNA


title: normal.ct-177

description: cell-free DNA


title: normal.ct-176

description: cell-free DNA


title: normal.ct-164

description: cell-free DNA


title: normal.ct-171

description: cell-free DNA


title: normal.ct-165

description: cell-free DNA


title: normal.ct-162

description: cell-free DNA


title: normal.ct-166

description: cell-free DNA


title: normal.ct-160

description: cell-free DNA


title: normal.ct-175

description: cell-free DNA


title: normal.ct-158

description: cell-free DNA


title: normal.ct-159

description: cell-free DNA


title: normal.ct-168

description: cell-free DNA


title: normal.ct-167

description: cell-free DNA


title: normal.ct-155

description: cell-free DNA


title: normal.ct-163

description: cell-free DNA


title: normal.ct-161

description: cell-free DNA


title: normal.ct-279

description: cell-free DNA


title: normal.ct-157

description: cell-free DNA


title: normal.ct-154

description: cell-free DNA


title: normal.ct-156

description: cell-free DNA


title: normal.ct-149

description: cell-free DNA


title: normal.ct-148

description: cell-free DNA


title: normal.ct-142

description: cell-free DNA


title: normal.ct-143

description: cell-free DNA


title: normal.ct-153

description: cell-free DNA


title: normal.ct-152

description: cell-free DNA


title: normal.ct-137

description: cell-free DNA


title: normal.ct-136

description: cell-free DNA


title: normal.ct-135

description: cell-free DNA


title: normal.ct-131

description: cell-free DNA


title: normal.ct-133

description: cell-free DNA


title: normal.ct-128

description: cell-free DNA


title: normal.ct-151

description: cell-free DNA


title: normal.ct-146

description: cell-free DNA


title: normal.ct-150

description: cell-free DNA


title: normal.ct-124

description: cell-free DNA


title: normal.ct-123

description: cell-free DNA


title: normal.ct-140

description: cell-free DNA


title: normal.ct-147

description: cell-free DNA


title: normal.ct-121

description: cell-free DNA


title: normal.ct-172

description: cell-free DNA


title: normal.ct-122

description: cell-free DNA


title: normal.ct-116

description: cell-free DNA


title: normal.ct-117

description: cell-free DNA


title: normal.ct-115

description: cell-free DNA


title: normal.ct-145

description: cell-free DNA


title: normal.ct-144

description: cell-free DNA


title: normal.ct-113

description: cell-free DNA


title: normal.ct-141

description: cell-free DNA


title: normal.ct-111

description: cell-free DNA


title: normal.ct-139

description: cell-free DNA


title: normal.ct-108

description: cell-free DNA


title: normal.ct-134

description: cell-free DNA


title: normal.ct-132

description: cell-free DNA


title: normal.ct-129

description: cell-free DNA


title: normal.ct-130

description: cell-free DNA


title: normal.ct-127

description: cell-free DNA


title: normal.ct-126

description: cell-free DNA


title: normal.ct-107

description: cell-free DNA


title: normal.ct-104

description: cell-free DNA


title: normal.ct-105

description: cell-free DNA


title: normal.ct-125

description: cell-free DNA


title: normal.ct-114

description: cell-free DNA


title: normal.ct-99

description: cell-free DNA


title: normal.ct-98

description: cell-free DNA


title: normal.ct-97

description: cell-free DNA


title: normal.ct-96

description: cell-free DNA


title: normal.ct-138

description: cell-free DNA


title: normal.ct-120

description: cell-free DNA


title: normal.ct-95

description: cell-free DNA


title: normal.ct-118

description: cell-free DNA


title: normal.ct-110

description: cell-free DNA


title: normal.ct-112

description: cell-free DNA


title: normal.ct-109

description: cell-free DNA


title: normal.ct-89

description: cell-free DNA


title: normal.ct-88

description: cell-free DNA


title: normal.ct-87

description: cell-free DNA


title: normal.ct-102

description: cell-free DNA


title: normal.ct-86

description: cell-free DNA


title: normal.ct-83

description: cell-free DNA


title: normal.ct-106

description: cell-free DNA


title: normal.ct-119

description: cell-free DNA


title: normal.ct-85

description: cell-free DNA


title: normal.ct-100

description: cell-free DNA


title: normal.ct-101

description: cell-free DNA


title: normal.ct-80

description: cell-free DNA


title: normal.ct-79

description: cell-free DNA


title: normal.ct-94

description: cell-free DNA


title: normal.ct-93

description: cell-free DNA


title: normal.ct-76

description: cell-free DNA


title: normal.ct-103

description: cell-free DNA


title: normal.ct-91

description: cell-free DNA


title: normal.ct-78

description: cell-free DNA


title: normal.ct-82

description: cell-free DNA


title: normal.ct-90

description: cell-free DNA


title: normal.ct-77

description: cell-free DNA


title: normal.ct-73

description: cell-free DNA


title: normal.ct-69

description: cell-free DNA


title: normal.ct-92

description: cell-free DNA


title: normal.ct-74

description: cell-free DNA


title: normal.ct-84

description: cell-free DNA


title: normal.ct-71

description: cell-free DNA


title: normal.ct-67

description: cell-free DNA


title: normal.ct-70

description: cell-free DNA


title: normal.ct-72

description: cell-free DNA


title: normal.ct-81

description: cell-free DNA


title: normal.ct-68

description: cell-free DNA


title: normal.ct-65

description: cell-free DNA


title: normal.ct-64

description: cell-free DNA


title: normal.ct-66

description: cell-free DNA


title: normal.ct-63

description: cell-free DNA


title: normal.ct-60

description: cell-free DNA


title: normal.ct-62

description: cell-free DNA


title: normal.ct-75

description: cell-free DNA


title: normal.ct-61

description: cell-free DNA


title: normal.ct-59

description: cell-free DNA


title: normal.ct-58

description: cell-free DNA


title: normal.ct-57

description: cell-free DNA


title: normal.ct-56

description: cell-free DNA


title: normal.ct-54

description: cell-free DNA


title: normal.ct-51

description: cell-free DNA


title: normal.ct-52

description: cell-free DNA


title: normal.ct-55

description: cell-free DNA


title: normal.ct-50

description: cell-free DNA


title: normal.ct-49

description: cell-free DNA


title: normal.ct-48

description: cell-free DNA


title: normal.ct-46

description: cell-free DNA


title: normal.ct-45

description: cell-free DNA


title: normal.ct-44

description: cell-free DNA


title: normal.ct-40

description: cell-free DNA


title: normal.ct-41

description: cell-free DNA


title: normal.ct-42

description: cell-free DNA


title: normal.ct-37

description: cell-free DNA


title: normal.ct-36

description: cell-free DNA


title: normal.ct-35

description: cell-free DNA


title: normal.ct-34

description: cell-free DNA


title: normal.ct-39

description: cell-free DNA


title: normal.ct-32

description: cell-free DNA


title: normal.ct-31

description: cell-free DNA


title: normal.ct-53

description: cell-free DNA


title: normal.ct-38

description: cell-free DNA


title: normal.ct-23

description: cell-free DNA


title: normal.ct-30

description: cell-free DNA


title: normal.ct-26

description: cell-free DNA


title: normal.ct-27

description: cell-free DNA


title: normal.ct-29

description: cell-free DNA


title: normal.ct-24

description: cell-free DNA


title: normal.ct-25

description: cell-free DNA


title: normal.ct-28

description: cell-free DNA


title: iR2ko_592

city: New york

first: Yurii

last: Chinenov

state: New York

address: 535 E 71 str, Hospital for Special Surgery

department: Research Division

institute: Hospital for special surgery

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
28_FcR2bko_iR2ko_592_CTTGTA_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv

library_source: transcriptomic

data_processing:
1. 51 bp reads were aligned to annotated mouse genome (mm10, build 38.75, 41,128 genes and 87,108 transcripts) using CLC Bio Genomic Workbench 7.5 (Qiagen).
2. Unique exon reads were used as an expression metric. Genes with less than 3 counts per million (cpm) in all replicates were considered non-expressing and filtered out prior to differential expression analysis.
3. The feature counts were normalized to the library size using the weighted trimmed mean of M-values methods.
4. A quasi-likelihood negative binomial generalized log-linear model was fit to read counts for each gene. An empirical Bayes quasi-likelihood F-tests likelihood ratio tests was performed gene-wise to evaluate the significance of differences in expression between analyzed groups Genes with a Benjamini-Hochberg false discovery rate (FDR)-corrected p-value < 0.01 and at least two-fold expression change were considered to be differentially expressed.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: *csv: Comma-separated text files include differentially expressed genes.

molecule: total RNA

source_name: sorted kidney macrophages

growth_protocol: C57BL/6 female mice (The Jackson Laboratory) were maintained in the Hospital for Special Surgery and Weill Cornell Animal Facility in full compliance with guidelines approved by the Institutional Animal Care and Use Committee.

extract_protocol:
1. For RNA-sequencing in whole kidneys, total RNA was extracted from whole kidneys from well-perfused mice using an RNeasy mini kit (Qiagen).
2. For sorted macrophages, kidneys from 7-9 m old mice were first minced and digested with collagenase B (Roche) for 45 minutes at 37ºC. Macrophages were enriched by centrifuging cells in 40% percoll/PBS (v/v). Cells were stained with fluorochrome-conjugated anti-mouse antibodies, and CD45+F4/80hiCD11b+Ly6G-Ly6C- kidney macrophages were sorted into RLT lysis buffer directly. Total RNA was extracted using an RNeasy mini kit (Qiagen).
1. For total kidney, library preparation and sequencing were performed by Genomics Resources Core Facility at Weill Cornell Medical College using TruSeq RNA library prep kit (Illumina) followed by single read sequencing on the Illumina HiSeq 2500 instrument (4-6 samples/SR lane, 50 bp reads).
2. For sorted macrophages, library preparation and sequencing were performed at Epigenetics Core facility at Weill Cornell Medical College using the SMART-Seq v4 Ultra Low Input RNA Kit (Clontech) followed by single read clustering and 51 cycles sequencing on the Illumina HiSeq 2500 instrument.

treatment_protocol: Female littermates (WT, Rhbdf2-/-, Fcgr2b-/-, Fcgr2b-/-Rhbdf2-/- mice) were aged to 7-9 m of age.

tag: strain/background

tag: genotype/variation

value: FcR2b-/- Rhbdf2-/-

tag: age

value: 7-9 months

tag: Sex

value: Female


title: normal.ct-22

description: cell-free DNA


title: iR2ko_823

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
27_FcR2bko_iR2ko_823_GGCTAC_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: normal.ct-47

description: cell-free DNA


title: normal.ct-43

description: cell-free DNA


title: iR2ko_579

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
26_FcR2bko_iR2ko_579_TAGCTT_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: normal.ct-19

description: cell-free DNA


title: FcR2bko_875

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
25_FcR2bko_875_GATCAG_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: FcR2bko_595

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
24_FcR2bko_595_ACTTGA_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: normal.ct-33

description: cell-free DNA


title: iR2ko_KO3

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
22_iR2KO_KO3_GCCAAT_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: normal.ct-18

description: cell-free DNA


title: normal.ct-16

description: cell-free DNA


title: FcR2bko_847

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
23_FcR2bko_847_CAGATC_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: normal.ct-15

description: cell-free DNA


title: iR2ko_KOb

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
21_iR2KO_KOb_ACAGTG_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: normal.ct-14

description: cell-free DNA


title: WT2

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
19_WT2_TTAGGC_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: iR2ko_KOa

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
20_iR2KO_KOa_TGACCA_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: normal.ct-13

description: cell-free DNA


title: normal.ct-12

description: cell-free DNA


title: normal.ct-21

description: cell-free DNA


title: normal.ct-11

description: cell-free DNA


title: normal.ct-20

description: cell-free DNA


title: iR2ko_65

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
16_FcR2bko_iR2ko_65_ATTCCT_L008_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv

source_name: total kidney

tag: tissue

value: Kidney


title: iR2ko_370

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
14_FcR2bko_iR2ko_370_GTGGCC_L008_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: normal.ct-8

description: cell-free DNA


title: normal.ct-10

description: cell-free DNA


title: WTa

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
17_WTa_ATCACG_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: normal.ct-9

description: cell-free DNA


title: normal.ct-7

description: cell-free DNA


title: normal.ct-17

description: cell-free DNA


title: FcR2bko_591

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
11_FcR2bko_591_CCGTCC_L007_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: normal.ct-6

description: cell-free DNA


title: iR2ko_348

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
13_FcR2bko_iR2ko_348_ATCACG_L008_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: normal.ct-4

description: cell-free DNA


title: FcR2bko_398

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
10_FcR2bko_398_ATGTCA_L007_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: normal.ct-5

description: cell-free DNA


title: normal.ct-3

description: cell-free DNA


title: FcR2bko_21

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
09_FcR2bko_21_ACAGTG_L007
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: FcR2bko_594

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
12_FcR2bko_594_GTCCGC_L007_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: normal.ct-1

description: cell-free DNA


title: iR2ko_352

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
07_iR2ko_352_CTTGTA_L006_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: WTb

description:
Sorting strategy: CD45+F4/80hiCD11b+Ly6GLy6C-
PolyA-enriched RNA
18_WTb_CGATGT_R1
Processed data file: sorted_MF_edgeR_2016_07_06_submitted.csv


title: iR2ko_367

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
15_FcR2bko_iR2ko_367_GAGTGG_L008_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: normal.ct-2

description: cell-free DNA


title: HCC.ct-1221

description: cell-free DNA

value: hepatocellular carcinoma patient


title: iR2ko_351

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
06_iR2ko_351_GCCAAT_L006_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: HCC.ct-1220

description: cell-free DNA


title: HCC.ct-1219

description: cell-free DNA


title: WT_388

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
03_WT_388_AGTCAA_L005_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: HCC.ct-1218

description: cell-free DNA


title: WT_356

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
02_WT_356_CAGATC_L005_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: HCC.ct-1217

description: cell-free DNA


title: WT_550

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
04_WT_550_GTGAAA_L005_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: HCC.ct-1216

description: cell-free DNA


title: HCC.ct-1215

description: cell-free DNA


title: WT_346

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
01_WT_346_CGATGT_L005_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: iR2ko_355

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
08_iR2ko_355_AGTTCC_L006_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: HCC.ct-1212

description: cell-free DNA


title: HCC.ct-1213

description: cell-free DNA


title: HCC.ct-1214

description: cell-free DNA


title: HCC.ct-1208

description: cell-free DNA


title: HCC.ct-1210

description: cell-free DNA


title: iR2ko_334

description:
Sorting strategy: Total tissue
PolyA-enriched RNA
05_iR2ko_334_TGACCA_L006_R1
Processed data file: total_kidney_edgeR_2016_07_06_submitted.csv


title: HCC.ct-1211

description: cell-free DNA


title: HCC.ct-1206

description: cell-free DNA


title: HCC.ct-1204

description: cell-free DNA


title: GHN70_p70

city: Madrid

first: Mirna

middle: Alicia

last: Perez-Moreno

state: Madrid

address: 3rd Melchor Fernandez Almagro st

department: Epithelial Cell Biology

country: Spain

institute: CNIO

data_processing:
RNA-seq processing:
RNA-seq data was analysed with the nextpresso pipeline (http://bioinfo.cnio.es/nextpresso/) as follows:
Reads are quality-checked with FastQC, and aligned to the mouse genome (GRCh38/mm10) with TopHat-2.0.10 (using Bowtie 1.0.0 and Samtools 0.1.19), allowing 2 mismatches and 20 multihits
Transcripts quantification and differential expression are calculated with Cufflinks 2.2.1, using the Mus musculusGRCm38/mm10 transcript annotations from the UCSC Genome Browser
Genome_build: GRCh38/mm10
Supplementary_files_format_and_content: FPKM values calculated with Cufflinks

source_name: Dermal lymphatic endothelial cells

extract_protocol:
RNA was isolated with Absolutely RNA Nanoprep kit according to the manufacturer´s protocol.
Variable amounts of total RNA samples, between 50 and 2,000 pg, were processed with the SMART-Seq v4 Ultra Low Input RNA Kit (Clontech) by following manufacturer instructions.
Resulting cDNA was sheared on a S220 Focused-ultrasonicator (Covaris) and subsequently processed with the "NEBNext Ultra II DNA Library Prep Kit for Illumina" (NEB #E7645).
Briefly, oligo(dT)-primed reverse transcription was performed in presence of a template switching oligonucleotide, double stranded cDNA was produced by limited-cycle PCR and submitted to acoustic shearing.
Fragments were processed through subsequent enzymatic treatments of end-repair, dA-tailing, and ligation to Illumina adapters. Adapter-ligated libraries were completed by 6 cycles of PCR.

treatment_protocol: Mice were treated wth tamoxifen in order to induce eYFP expression in Lymphatic endothelial cells.

value: Prox1CreERT2; ROSA26-LSL-eYFP

tag: follicle cycle

value: P70 (late telogen)

tag: treatment

value: tamoxifen


title: HCC.ct-1201

description: cell-free DNA


title: HCC.ct-1207

description: cell-free DNA


title: HCC.ct-1205

description: cell-free DNA


title: HCC.ct-1202

description: cell-free DNA


title: HCC.ct-1200

description: cell-free DNA


title: HCC.ct-1209

description: cell-free DNA


title: HCC.ct-1199

description: cell-free DNA


title: HCC.ct-1203

description: cell-free DNA


title: HCC.ct-1198

description: cell-free DNA


title: GHN72_p70


title: HCC.ct-1195

description: cell-free DNA


title: HCC.ct-1194

description: cell-free DNA


title: HCC.ct-1191

description: cell-free DNA


title: HCC.ct-1193

description: cell-free DNA


title: HCC.ct-1196

description: cell-free DNA


title: HCC.ct-1197

description: cell-free DNA


title: HCC.ct-1192

description: cell-free DNA


title: HCC.ct-1189

description: cell-free DNA


title: HCC.ct-1190

description: cell-free DNA


title: GHN104_p55

value: P55 (mid telogen)


title: HCC.ct-1188

description: cell-free DNA


title: HCC.ct-1187

description: cell-free DNA


title: HCC.ct-1186

description: cell-free DNA


title: HCC.ct-1185

description: cell-free DNA


title: HCC.ct-1182

description: cell-free DNA


title: HCC.ct-1180

description: cell-free DNA


title: HCC.ct-1179

description: cell-free DNA


title: HCC.ct-1184

description: cell-free DNA


title: HCC.ct-1173

description: cell-free DNA


title: HCC.ct-1183

description: cell-free DNA


title: HCC.ct-1181

description: cell-free DNA


title: HCC.ct-1171

description: cell-free DNA


title: HCC.ct-1175

description: cell-free DNA


title: HCC.ct-1177

description: cell-free DNA


title: HCC.ct-1176

description: cell-free DNA


title: HCC.ct-1178

description: cell-free DNA


title: HCC.ct-1167

description: cell-free DNA


title: HCC.ct-1169

description: cell-free DNA


title: HCC.ct-1174

description: cell-free DNA


title: HCC.ct-1166

description: cell-free DNA


title: HCC.ct-1164

description: cell-free DNA


title: HCC.ct-1165

description: cell-free DNA


title: HCC.ct-1161

description: cell-free DNA


title: HCC.ct-1162

description: cell-free DNA


title: HCC.ct-1160

description: cell-free DNA


title: HCC.ct-1157

description: cell-free DNA


title: HCC.ct-1155

description: cell-free DNA


title: HCC.ct-1154

description: cell-free DNA


title: HCC.ct-1158

description: cell-free DNA


title: HCC.ct-1163

description: cell-free DNA


title: HCC.ct-1156

description: cell-free DNA


title: HCC.ct-1151

description: cell-free DNA


title: HCC.ct-1153

description: cell-free DNA


title: HCC.ct-1152

description: cell-free DNA


title: HCC.ct-1170

description: cell-free DNA


title: HCC.ct-1149

description: cell-free DNA


title: HCC.ct-1148

description: cell-free DNA


title: HCC.ct-1146

description: cell-free DNA


title: HCC.ct-1150

description: cell-free DNA


title: HCC.ct-1172

description: cell-free DNA


title: HCC.ct-1144

description: cell-free DNA


title: HCC.ct-1159

description: cell-free DNA


title: HCC.ct-1145

description: cell-free DNA


title: HCC.ct-1168

description: cell-free DNA


title: HCC.ct-1143

description: cell-free DNA


title: HCC.ct-1147

description: cell-free DNA


title: HCC.ct-1141

description: cell-free DNA


title: HCC.ct-1140

description: cell-free DNA


title: HCC.ct-1142

description: cell-free DNA


title: HCC.ct-1139

description: cell-free DNA


title: HCC.ct-1137

description: cell-free DNA


title: HCC.ct-1136

description: cell-free DNA


title: HCC.ct-1138

description: cell-free DNA


title: HCC.ct-1135

description: cell-free DNA


title: HCC.ct-1134

description: cell-free DNA


title: HCC.ct-1131

description: cell-free DNA


title: HCC.ct-1132

description: cell-free DNA


title: HCC.ct-1130

description: cell-free DNA


title: HCC.ct-1129

description: cell-free DNA


title: HCC.ct-1133

description: cell-free DNA


title: HCC.ct-1128

description: cell-free DNA


title: HCC.ct-1124

description: cell-free DNA


title: HCC.ct-1126

description: cell-free DNA


title: HCC.ct-1122

description: cell-free DNA


title: HCC.ct-1119

description: cell-free DNA


title: HCC.ct-1118

description: cell-free DNA


title: HCC.ct-1123

description: cell-free DNA


title: HCC.ct-1121

description: cell-free DNA


title: HCC.ct-1125

description: cell-free DNA


title: HCC.ct-1120

description: cell-free DNA


title: HCC.ct-1114

description: cell-free DNA


title: HCC.ct-1117

description: cell-free DNA


title: HCC.ct-1113

description: cell-free DNA


title: HCC.ct-1116

description: cell-free DNA


title: HCC.ct-1115

description: cell-free DNA


title: HCC.ct-1112

description: cell-free DNA


title: HCC.ct-1110

description: cell-free DNA


title: HCC.ct-1108

description: cell-free DNA


title: HCC.ct-1109

description: cell-free DNA


title: HCC.ct-1107

description: cell-free DNA


title: HCC.ct-1106

description: cell-free DNA


title: HCC.ct-1104

description: cell-free DNA


title: HCC.ct-1127

description: cell-free DNA


title: HCC.ct-1103

description: cell-free DNA


title: HCC.ct-1102

description: cell-free DNA


title: HCC.ct-1100

description: cell-free DNA


title: HCC.ct-1098

description: cell-free DNA


title: HCC.ct-1097

description: cell-free DNA


title: HCC.ct-1096

description: cell-free DNA


title: HCC.ct-1092

description: cell-free DNA


title: HCC.ct-1095

description: cell-free DNA


title: HCC.ct-1094

description: cell-free DNA


title: HCC.ct-1111

description: cell-free DNA


title: HCC.ct-1090

description: cell-free DNA


title: HCC.ct-1089

description: cell-free DNA


title: HCC.ct-1088

description: cell-free DNA


title: HCC.ct-1099

description: cell-free DNA


title: HCC.ct-1087

description: cell-free DNA


title: HCC.ct-1085

description: cell-free DNA


title: HCC.ct-1084

description: cell-free DNA


title: HCC.ct-1081

description: cell-free DNA


title: HCC.ct-1083

description: cell-free DNA


title: HCC.ct-1105

description: cell-free DNA


title: HCC.ct-1086

description: cell-free DNA


title: HCC.ct-1082

description: cell-free DNA


title: HCC.ct-1078

description: cell-free DNA


title: HCC.ct-1093

description: cell-free DNA


title: HCC.ct-1079

description: cell-free DNA


title: HCC.ct-1080

description: cell-free DNA


title: HCC.ct-1101

description: cell-free DNA


title: HCC.ct-1075

description: cell-free DNA


title: HCC.ct-1076

description: cell-free DNA


title: HCC.ct-1074

description: cell-free DNA


title: HCC.ct-1073

description: cell-free DNA


title: HCC.ct-1077

description: cell-free DNA


title: HCC.ct-1091

description: cell-free DNA


title: HCC.ct-1072

description: cell-free DNA


title: HCC.ct-1070

description: cell-free DNA


title: HCC.ct-1071

description: cell-free DNA


title: HCC.ct-1069

description: cell-free DNA


title: HCC.ct-1067

description: cell-free DNA


title: HCC.ct-1068

description: cell-free DNA


title: HCC.ct-1064

description: cell-free DNA


title: HCC.ct-1063

description: cell-free DNA


title: HCC.ct-1065

description: cell-free DNA


title: HCC.ct-1062

description: cell-free DNA


title: HCC.ct-1060

description: cell-free DNA


title: HCC.ct-1066

description: cell-free DNA


title: HCC.ct-1059

description: cell-free DNA


title: HCC.ct-1058

description: cell-free DNA


title: HCC.ct-1055

description: cell-free DNA


title: HCC.ct-1056

description: cell-free DNA


title: HCC.ct-1061

description: cell-free DNA


title: HCC.ct-1052

description: cell-free DNA


title: HCC.ct-1057

description: cell-free DNA


title: HCC.ct-1048

description: cell-free DNA


title: HCC.ct-1047

description: cell-free DNA


title: HCC.ct-1051

description: cell-free DNA


title: HCC.ct-1050

description: cell-free DNA


title: HCC.ct-1049

description: cell-free DNA


title: HCC.ct-1045

description: cell-free DNA


title: HCC.ct-1044

description: cell-free DNA


title: HCC.ct-1043

description: cell-free DNA


title: HCC.ct-1042

description: cell-free DNA


title: HCC.ct-1041

description: cell-free DNA


title: HCC.ct-1039

description: cell-free DNA


title: HCC.ct-1038

description: cell-free DNA


title: HCC.ct-1037

description: cell-free DNA


title: HCC.ct-1035

description: cell-free DNA


title: HCC.ct-1040

description: cell-free DNA


title: HCC.ct-1034

description: cell-free DNA


title: HCC.ct-1053

description: cell-free DNA


title: HCC.ct-1030

description: cell-free DNA


title: HCC.ct-1054

description: cell-free DNA


title: HCC.ct-1033

description: cell-free DNA


title: HCC.ct-1028

description: cell-free DNA


title: HCC.ct-1032

description: cell-free DNA


title: HCC.ct-1026

description: cell-free DNA


title: HCC.ct-1031

description: cell-free DNA


title: HCC.ct-1029

description: cell-free DNA


title: HCC.ct-1027

description: cell-free DNA


title: HCC.ct-1024

description: cell-free DNA


title: HCC.ct-1025

description: cell-free DNA


title: HCC.ct-1021

description: cell-free DNA


title: HCC.ct-1023

description: cell-free DNA


title: HCC.ct-1022

description: cell-free DNA


title: HCC.ct-1020

description: cell-free DNA


title: HCC.ct-1046

description: cell-free DNA


title: HCC.ct-1018

description: cell-free DNA


title: HCC.ct-1016

description: cell-free DNA


title: HCC.ct-1014

description: cell-free DNA


title: HCC.ct-1019

description: cell-free DNA


title: HCC.ct-1036

description: cell-free DNA


title: HCC.ct-1013

description: cell-free DNA


title: HCC.ct-1011

description: cell-free DNA


title: HCC.ct-1009

description: cell-free DNA


title: HCC.ct-1008

description: cell-free DNA


title: HCC.ct-1012

description: cell-free DNA


title: HCC.ct-1007

description: cell-free DNA


title: HCC.ct-1001

description: cell-free DNA


title: HCC.ct-1006

description: cell-free DNA


title: HCC.ct-1003

description: cell-free DNA


title: HCC.ct-1004

description: cell-free DNA


title: HCC.ct-1000

description: cell-free DNA


title: HCC.ct-999

description: cell-free DNA


title: HCC.ct-1005

description: cell-free DNA


title: HCC.ct-997

description: cell-free DNA


title: HCC.ct-998

description: cell-free DNA


title: HCC.ct-1017

description: cell-free DNA


title: HCC.ct-993

description: cell-free DNA


title: HCC.ct-1015

description: cell-free DNA


title: HCC.ct-995

description: cell-free DNA


title: HCC.ct-994

description: cell-free DNA


title: HCC.ct-990

description: cell-free DNA


title: HCC.ct-991

description: cell-free DNA


title: HCC.ct-992

description: cell-free DNA


title: HCC.ct-989

description: cell-free DNA


title: HCC.ct-988

description: cell-free DNA


title: HCC.ct-986

description: cell-free DNA


title: HCC.ct-987

description: cell-free DNA


title: HCC.ct-983

description: cell-free DNA


title: HCC.ct-985

description: cell-free DNA


title: HCC.ct-1010

description: cell-free DNA


title: HCC.ct-982

description: cell-free DNA


title: HCC.ct-981

description: cell-free DNA


title: HCC.ct-978

description: cell-free DNA


title: HCC.ct-1002

description: cell-free DNA


title: HCC.ct-980

description: cell-free DNA


title: HCC.ct-996

description: cell-free DNA


title: HCC.ct-972

description: cell-free DNA


title: HCC.ct-973

description: cell-free DNA


title: HCC.ct-979

description: cell-free DNA


title: HCC.ct-971

description: cell-free DNA


title: HCC.ct-976

description: cell-free DNA


title: HCC.ct-968

description: cell-free DNA


title: HCC.ct-970

description: cell-free DNA


title: HCC.ct-967

description: cell-free DNA


title: HCC.ct-977

description: cell-free DNA


title: HCC.ct-965

description: cell-free DNA


title: HCC.ct-984

description: cell-free DNA


title: HCC.ct-969

description: cell-free DNA


title: HCC.ct-974

description: cell-free DNA


title: HCC.ct-961

description: cell-free DNA


title: HCC.ct-958

description: cell-free DNA


title: HCC.ct-962

description: cell-free DNA


title: HCC.ct-964

description: cell-free DNA


title: HCC.ct-960

description: cell-free DNA


title: HCC.ct-955

description: cell-free DNA


title: HCC.ct-959

description: cell-free DNA


title: HCC.ct-953

description: cell-free DNA


title: HCC.ct-957

description: cell-free DNA


title: HCC.ct-956

description: cell-free DNA


title: HCC.ct-952

description: cell-free DNA


title: HCC.ct-950

description: cell-free DNA


title: HCC.ct-951

description: cell-free DNA


title: HCC.ct-954

description: cell-free DNA


title: HCC.ct-949

description: cell-free DNA


title: HCC.ct-946

description: cell-free DNA


title: HCC.ct-948

description: cell-free DNA


title: HCC.ct-944

description: cell-free DNA


title: HCC.ct-963

description: cell-free DNA


title: HCC.ct-966

description: cell-free DNA


title: HCC.ct-943

description: cell-free DNA


title: cWTC

city: Montréal

first: Claude

last: Perreault

state: Quebec

address: 2950, Chemin de Polytechnique

country: Canada

institute: Institute for Research in Immunology and Cancer

data_processing:
Basecalls performed using Illumina RTA 1.18.64
Samples demultiplexed using bcl2fastq 2.17
Sequenced reads were trimmed for sequencing adapters and low quality extrimities and mapped to the reference genome using STAR version 2.5.1b
Readcounts were computed by STAR during sequence alignment based on annotations from Gencode version M13
Expression values were also computed using RSEM version 1.2.28 based on Gencode version M13 annotations
Genome_build: GRCh38
Supplementary_files_format_and_content: Readcounts: Tab-delimited file where columns are Ensembl gene identifier, counts for unstranded RNA, counts for 1st strand aligned, counts for 2nd strand aligned
Supplementary_files_format_and_content: RSEM: Tab-delimited file where columns correspond to a standard RSEM output (first line identifies the column)

molecule: polyA RNA

source_name: cTEC from WT mice

extract_protocol:
TriZol + RNeasy mini Kit (Qiagen, #74106)
KAPA Stranded RNA-Seq PolyA (KAPA Biosystems)

value: B6.B6CB-Psmb11tm1Smta (Psmb11+/+)

value: 8- to 10- week-old

value: thymus

value: primary cortical thymic epithelial cells


title: cWTB


title: HCC.ct-940

description: cell-free DNA

value: blood serum


title: HCC.ct-938

description: cell-free DNA


title: HCC.ct-942

description: cell-free DNA


title: cKOB

source_name: cTEC from Psmb11-deficient mice

value: B6.B6CB-Psmb11tm1Smta (Psmb11-/-)


title: HCC.ct-934

description: cell-free DNA


title: HCC.ct-936

description: cell-free DNA


title: cKOC


title: HCC.ct-933

description: cell-free DNA


title: HCC.ct-937

description: cell-free DNA


title: HCC.ct-935

description: cell-free DNA


title: HCC.ct-945

description: cell-free DNA


title: esc-b_c15

city: Guangzhou

first: Lihui

last: Lin

state: Guangdong

address: No.190, Kaiyuan Street

department: Stem cell

country: China

institute: Guangzhou Institutes Of Biomedicine and Health Chinese Academy Of Science

data_processing:
Fastq files were generated from illumina BCL raw data using bcl2fastq scripts;
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence.
Mapped read counts and transcripts per million(TPM) were calculated using RSEM(1.2.22) with parameters(-p 8 --estimated-rspd --no-bam-output).

source_name: mouse embryonic stem cells (ESCs)

growth_protocol: Mouse ESCs (mESCs) and iPS cell lines were cultured on feeder layers with mESC medium (high glucose DMEM, 15%FBS, NEAA, GlutaMAX, LIF) plus 2i (1 m PD0325901, 3 m CHIR99021). MEF cells were maintained in 10% FBS medium (high glucose DMEM supplemented with 10% FBS, GlutaMAX and NEAA). The reprogramming cells at different days were cultured in iCD1 medium.

extract_protocol:
For bulk cells, total RNAs were extracted by chloroform-isopropanol method; for single cell, following the protocol of Using the C1 Single-Cell Auto Prep System to Generate mRNA from Single Cells and Libraries for Sequencing (Fluidigm, PN 100-5950 B1).
Single cell libraries were constructed following the protocol of Using the C1 Single-Cell Auto Prep System to Generate mRNA from Single Cells and Libraries for Sequencing (Fluidigm, PN 100-5950 B1).

value: OG2 transgenic mouse embryonic stem cells (OG2-mESCs)

tag: Stage

tag: strain background


title: esc-b_c17


title: esc_c20


title: HCC.ct-932

description: cell-free DNA


title: HCC.ct-931

description: cell-free DNA


title: esc-b_c16


title: esc_c35


title: HCC.ct-947

description: cell-free DNA


title: esc-b_c89


title: HCC.ct-930

description: cell-free DNA


title: HCC.ct-941

description: cell-free DNA


title: HCC.ct-929

description: cell-free DNA


title: esc-b_c87


title: HCC.ct-939

description: cell-free DNA


title: cWTA


title: HCC.ct-928

description: cell-free DNA


title: cKOA


title: esc-b_c81


title: HCC.ct-927

description: cell-free DNA


title: esc_c25


title: HCC.ct-925

description: cell-free DNA


title: esc_c27


title: esc_c29


title: HCC.ct-922

description: cell-free DNA


title: HCC.ct-920

description: cell-free DNA


title: esc_c24


title: HCC.ct-924

description: cell-free DNA


title: HCC.ct-921

description: cell-free DNA


title: esc-b_c43


title: HCC.ct-926

description: cell-free DNA


title: HCC.ct-916

description: cell-free DNA


title: HCC.ct-919

description: cell-free DNA


title: HCC.ct-918

description: cell-free DNA


title: HCC.ct-917

description: cell-free DNA


title: esc-b_c45


title: esc_c28


title: esc-b_c41


title: esc_c65


title: esc_c69


title: esc-b_c47


title: HCC.ct-915

description: cell-free DNA


title: HCC.ct-914

description: cell-free DNA


title: HCC.ct-913

description: cell-free DNA


title: esc-b_c83


title: esc_c91


title: esc-b_c18


title: HCC.ct-923

description: cell-free DNA


title: esc-b_c42


title: esc-b_c04


title: HCC.ct-912

description: cell-free DNA


title: esc-b_c07


title: HCC.ct-910

description: cell-free DNA


title: esc-b_c05


title: HCC.ct-911

description: cell-free DNA


title: esc-b_c02


title: HCC.ct-909

description: cell-free DNA


title: esc-b_c01


title: esc-b_c08


title: HCC.ct-904

description: cell-free DNA


title: HCC.ct-975

description: cell-free DNA


title: HCC.ct-907

description: cell-free DNA


title: esc-b_c71


title: HCC.ct-906

description: cell-free DNA


title: esc-b_c09


title: HCC.ct-905

description: cell-free DNA


title: esc-b_c77


title: HCC.ct-903

description: cell-free DNA


title: esc_c93


title: HCC.ct-901

description: cell-free DNA


title: esc_c92


title: esc-b_c75


title: HCC.ct-908

description: cell-free DNA


title: esc_c90


title: HCC.ct-900

description: cell-free DNA


title: esc-b_c39


title: HCC.ct-898

description: cell-free DNA


title: esc-b_c70


title: esc-b_c36


title: HCC.ct-899

description: cell-free DNA


title: HCC.ct-896

description: cell-free DNA


title: HCC.ct-902

description: cell-free DNA


title: esc-b_c32


title: esc-b_c34


title: HCC.ct-895

description: cell-free DNA


title: esc-b_c30


title: esc-b_c31


title: esc_c09


title: HCC.ct-891

description: cell-free DNA


title: HCC.ct-892

description: cell-free DNA


title: esc_c79


title: esc_c70


title: HCC.ct-890

description: cell-free DNA


title: HCC.ct-889

description: cell-free DNA


title: esc_c73


title: HCC.ct-888

description: cell-free DNA


title: HCC.ct-887

description: cell-free DNA


title: esc_c76


title: esc_c77


title: HCC.ct-886

description: cell-free DNA


title: esc_c30


title: HCC.ct-897

description: cell-free DNA


title: HCC.ct-894

description: cell-free DNA


title: esc_c32


title: esc_c81


title: HCC.ct-884

description: cell-free DNA


title: HCC.ct-883

description: cell-free DNA


title: HCC.ct-882

description: cell-free DNA


title: esc_c33


title: HCC.ct-881

description: cell-free DNA


title: HCC.ct-880

description: cell-free DNA


title: HCC.ct-893

description: cell-free DNA


title: esc-b_c67


title: esc_c34


title: HCC.ct-878

description: cell-free DNA


title: esc_c80


title: HCC.ct-876

description: cell-free DNA


title: esc-b_c68


title: esc_c38


title: HCC.ct-877

description: cell-free DNA


title: esc_c40


title: HCC.ct-873

description: cell-free DNA


title: esc_c49


title: HCC.ct-874

description: cell-free DNA


title: HCC.ct-875

description: cell-free DNA


title: esc_c45


title: esc-b_c69


title: HCC.ct-872

description: cell-free DNA


title: esc-b_c22


title: esc-b_c63


title: esc-b_c26


title: HCC.ct-870

description: cell-free DNA


title: HCC.ct-871

description: cell-free DNA


title: HCC.ct-879

description: cell-free DNA


title: esc-b_c28


title: esc-b_c29


title: HCC.ct-869

description: cell-free DNA


title: HCC.ct-868

description: cell-free DNA


title: esc-b_c90


title: HCC.ct-867

description: cell-free DNA


title: esc_c88


title: esc_c41


title: HCC.ct-866

description: cell-free DNA


title: esc_c17


title: esc_c13


title: esc-b_c88


title: HCC.ct-865

description: cell-free DNA


title: HCC.ct-885

description: cell-free DNA


title: HCC.ct-864

description: cell-free DNA


title: esc-b_c51


title: esc-b_c58


title: HCC.ct-861

description: cell-free DNA


title: esc-b_c52


title: HCC.ct-862

description: cell-free DNA


title: HCC.ct-860

description: cell-free DNA


title: HCC.ct-859

description: cell-free DNA


title: esc-b_c57


title: esc-b_c54


title: HCC.ct-858

description: cell-free DNA


title: HCC.ct-857

description: cell-free DNA


title: HCC.ct-855

description: cell-free DNA


title: HCC.ct-856

description: cell-free DNA


title: ips1_c29

source_name: induced pluripotent stem cells (iPSCs)

value: induced pluripotent stem cells (iPSCs)


title: ips4_c67


title: HCC.ct-854

description: cell-free DNA


title: ips1_c66


title: HCC.ct-853

description: cell-free DNA


title: ips4_c84


title: HCC.ct-852

description: cell-free DNA


title: HCC.ct-863

description: cell-free DNA


title: ips_c5


title: HCC.ct-851

description: cell-free DNA


title: ips4_c82


title: HCC.ct-850

description: cell-free DNA


title: ips1_c48


title: ips1_c46


title: HCC.ct-849

description: cell-free DNA


title: esc-b_c53


title: ips1_c47


title: HCC.ct-848

description: cell-free DNA


title: HCC.ct-847

description: cell-free DNA


title: ips1_c44


title: esc_c23


title: ips1_c45


title: HCC.ct-846

description: cell-free DNA


title: HCC.ct-845

description: cell-free DNA


title: ips1_c43


title: HCC.ct-844

description: cell-free DNA


title: ips1_c26


title: HCC.ct-842

description: cell-free DNA


title: ips1_c23


title: ips_c89


title: HCC.ct-841

description: cell-free DNA


title: HCC.ct-843

description: cell-free DNA


title: ips_c80


title: HCC.ct-839

description: cell-free DNA


title: ips4_c20


title: ips_c32


title: HCC.ct-836

description: cell-free DNA


title: HCC.ct-837

description: cell-free DNA


title: HCC.ct-838

description: cell-free DNA


title: ips4_c83


title: ips4_c27


title: ips_c26


title: HCC.ct-834

description: cell-free DNA


title: HCC.ct-835

description: cell-free DNA


title: ips1_c54


title: ips_c23


title: HCC.ct-832

description: cell-free DNA


title: HCC.ct-830

description: cell-free DNA


title: HCC.ct-829

description: cell-free DNA


title: ips1_c83


title: ips4_c45


title: HCC.ct-831

description: cell-free DNA


title: ips_c22


title: HCC.ct-833

description: cell-free DNA


title: ips4_c75


title: ips1_c80


title: ips4_c60


title: HCC.ct-827

description: cell-free DNA


title: ips1_c86


title: HCC.ct-826

description: cell-free DNA


title: HCC.ct-828

description: cell-free DNA


title: HCC.ct-840

description: cell-free DNA


title: ips1_c84


title: HCC.ct-824

description: cell-free DNA


title: HCC.ct-823

description: cell-free DNA


title: ips_c60


title: HCC.ct-822

description: cell-free DNA


title: ips_c61


title: ips_c64


title: ips4_c9


title: HCC.ct-821

description: cell-free DNA


title: HCC.ct-820

description: cell-free DNA


title: HCC.ct-819

description: cell-free DNA


title: HCC.ct-818

description: cell-free DNA


title: ips_c68


title: ips1_c51


title: HCC.ct-816

description: cell-free DNA


title: ips1_c75


title: ips1_c74


title: ips1_c64


title: ips1_c72


title: HCC.ct-815

description: cell-free DNA


title: ips1_c57


title: HCC.ct-812

description: cell-free DNA


title: HCC.ct-825

description: cell-free DNA


title: ips1_c37


title: HCC.ct-811

description: cell-free DNA


title: ips4_c2


title: ips1_c17


title: ips4_c12


title: ips_c33


title: ips_c96


title: HCC.ct-807

description: cell-free DNA


title: HCC.ct-808

description: cell-free DNA


title: HCC.ct-809

description: cell-free DNA


title: HCC.ct-810

description: cell-free DNA


title: ips_c43


title: ips4_c37


title: HCC.ct-817

description: cell-free DNA


title: ips4_c46


title: HCC.ct-806

description: cell-free DNA


title: HCC.ct-804

description: cell-free DNA


title: ips4_c35


title: HCC.ct-805

description: cell-free DNA


title: ips4_c54


title: HCC.ct-803

description: cell-free DNA


title: ips4_c33


title: HCC.ct-814

description: cell-free DNA


title: HCC.ct-802

description: cell-free DNA


title: HCC.ct-813

description: cell-free DNA


title: ips4_c30


title: ips1_c95


title: ips1_c96


title: ips4_c38


title: ips1_c94


title: HCC.ct-798

description: cell-free DNA


title: ips1_c92


title: HCC.ct-794

description: cell-free DNA


title: ips_c34


title: HCC.ct-795

description: cell-free DNA


title: HCC.ct-796

description: cell-free DNA


title: ips1_c4


title: ips4_c59


title: ips1_c2


title: HCC.ct-792

description: cell-free DNA


title: HCC.ct-793

description: cell-free DNA


title: HCC.ct-791

description: cell-free DNA


title: osk_d7_c62

source_name: mouse embryonic fibroblasts (MEFs)

value: OG2 transgenic mouse embryonic fibroblasts (MEFs)


title: ips1_c1


title: HCC.ct-800

description: cell-free DNA


title: HCC.ct-788

description: cell-free DNA


title: HCC.ct-801

description: cell-free DNA


title: osk_d7-b_c31


title: HCC.ct-799

description: cell-free DNA


title: HCC.ct-790

description: cell-free DNA


title: osk_d7-b_c39


title: HCC.ct-789

description: cell-free DNA


title: osk_d7_c15


title: HCC.ct-786

description: cell-free DNA


title: HCC.ct-787

description: cell-free DNA


title: osk_d7_c72


title: osk_d7_c11


title: HCC.ct-785

description: cell-free DNA


title: HCC.ct-784

description: cell-free DNA


title: HCC.ct-797

description: cell-free DNA


title: HCC.ct-783

description: cell-free DNA


title: osk_d7_c64


title: HCC.ct-782

description: cell-free DNA


title: osk_d7-b_c38


title: HCC.ct-781

description: cell-free DNA


title: osk_d7_c44


title: HCC.ct-780

description: cell-free DNA


title: HCC.ct-779

description: cell-free DNA


title: osk_d7_c60


title: HCC.ct-775

description: cell-free DNA


title: HCC.ct-778

description: cell-free DNA


title: HCC.ct-772

description: cell-free DNA


title: HCC.ct-769

description: cell-free DNA


title: HCC.ct-768

description: cell-free DNA


title: HCC.ct-776

description: cell-free DNA


title: HCC.ct-773

description: cell-free DNA


title: HCC.ct-774

description: cell-free DNA


title: HCC.ct-771

description: cell-free DNA


title: HCC.ct-765

description: cell-free DNA


title: HCC.ct-766

description: cell-free DNA


title: HCC.ct-764

description: cell-free DNA


title: osk_d7_c61


title: HCC.ct-762

description: cell-free DNA


title: HCC.ct-763

description: cell-free DNA


title: osk_d7_c66


title: osk_d7_c63


title: osk_d7_c65


title: HCC.ct-761

description: cell-free DNA


title: osk_d7_c68


title: HCC.ct-760

description: cell-free DNA


title: HCC.ct-777

description: cell-free DNA


title: HCC.ct-759

description: cell-free DNA


title: osk_d7_c81


title: HCC.ct-758

description: cell-free DNA


title: osk_d7_c80


title: HCC.ct-757

description: cell-free DNA


title: osk_d7_c74


title: osk_d7_c82


title: HCC.ct-770

description: cell-free DNA


title: osk_d7_c36


title: osk_d7-b_c62


title: HCC.ct-767

description: cell-free DNA


title: HCC.ct-753

description: cell-free DNA


title: HCC.ct-752

description: cell-free DNA


title: HCC.ct-754

description: cell-free DNA


title: osk_d7-b_c64


title: HCC.ct-750

description: cell-free DNA


title: HCC.ct-751

description: cell-free DNA


title: HCC.ct-749

description: cell-free DNA


title: osk_d7_c33


title: osk_d7-b_c23


title: HCC.ct-748

description: cell-free DNA


title: HCC.ct-747

description: cell-free DNA


title: osk_d7-b_c67


title: osk_d7_c39


title: osk_d7_c56


title: osk_d7-b_c92


title: osk_d7-b_c94


title: HCC.ct-745

description: cell-free DNA


title: HCC.ct-743

description: cell-free DNA


title: osk_d7-b_c96


title: HCC.ct-755

description: cell-free DNA


title: osk_d7-b_c93


title: HCC.ct-746

description: cell-free DNA


title: HCC.ct-742

description: cell-free DNA


title: HCC.ct-756

description: cell-free DNA


title: HCC.ct-744

description: cell-free DNA


title: osk_d7_c83


title: HCC.ct-741

description: cell-free DNA


title: osk_d7_c75


title: osk_d7_c77


title: osk_d7_c76


title: HCC.ct-740

description: cell-free DNA


title: HCC.ct-739

description: cell-free DNA


title: osk_d7_c71


title: osk_d7_c73


title: HCC.ct-738

description: cell-free DNA


title: osk_d7_c78


title: HCC.ct-737

description: cell-free DNA


title: osk_d7_c07


title: HCC.ct-736

description: cell-free DNA


title: osk_d7_c05


title: HCC.ct-734

description: cell-free DNA


title: osk_d7_c01


title: HCC.ct-735

description: cell-free DNA


title: osk_d7_c04


title: osk_d7_c09


title: HCC.ct-732

description: cell-free DNA


title: HCC.ct-730

description: cell-free DNA


title: HCC.ct-733

description: cell-free DNA


title: HCC.ct-729

description: cell-free DNA


title: HCC.ct-727

description: cell-free DNA


title: osk_d7_c49


title: osk_d7-b_c57


title: osk_d7_c41


title: HCC.ct-728

description: cell-free DNA


title: osk_d7-b_c13


title: osk_d7_c45


title: HCC.ct-726

description: cell-free DNA


title: osk_d7-b_c11


title: HCC.ct-723

description: cell-free DNA


title: HCC.ct-725

description: cell-free DNA


title: osk_d7-b_c82


title: HCC.ct-724

description: cell-free DNA


title: osk_d7-b_c17


title: HCC.ct-722

description: cell-free DNA


title: osk_d7_c30


title: HCC.ct-721

description: cell-free DNA


title: osk_d7-b_c45


title: HCC.ct-720

description: cell-free DNA


title: HCC.ct-719

description: cell-free DNA


title: osk_d7_c91


title: osk_d7_c53


title: HCC.ct-718

description: cell-free DNA


title: HCC.ct-731

description: cell-free DNA


title: HCC.ct-717

description: cell-free DNA


title: osk_d7_c51


title: HCC.ct-716

description: cell-free DNA


title: osk_d7-b_c89


title: HCC.ct-715

description: cell-free DNA


title: HCC.ct-714

description: cell-free DNA


title: HCC.ct-713

description: cell-free DNA


title: osk_d7-b_c74


title: osk_d7_c57


title: osk_d7-b_c75


title: osk_d7-b_c72


title: osk_d7_c86


title: osk_d7_c58


title: osk_d7-b_c48


title: HCC.ct-709

description: cell-free DNA


title: osk_d7_c85


title: osk_d7_c29


title: HCC.ct-711

description: cell-free DNA


title: HCC.ct-710

description: cell-free DNA


title: osk_d7_c26


title: HCC.ct-712

description: cell-free DNA


title: osk_d5-c_c38


title: osk_d5-c_c39


title: osk_d7-b_c40


title: osk_d5-c_c34


title: HCC.ct-706

description: cell-free DNA


title: HCC.ct-708

description: cell-free DNA


title: osk_d5_c08


title: HCC.ct-707

description: cell-free DNA


title: HCC.ct-703

description: cell-free DNA


title: osk_d5-b_c34


title: HCC.ct-704

description: cell-free DNA


title: HCC.ct-702

description: cell-free DNA


title: osk_d5-b_c30


title: osk_d5-b_c23


title: HCC.ct-700

description: cell-free DNA


title: HCC.ct-701

description: cell-free DNA


title: HCC.ct-699

description: cell-free DNA


title: HCC.ct-697

description: cell-free DNA


title: osk_d5_c52


title: osk_d5-b_c87


title: osk_d5-b_c86


title: HCC.ct-698

description: cell-free DNA


title: osk_d5-b_c88


title: osk_d5_c78


title: osk_d5_c75


title: osk_d5-c_c40


title: HCC.ct-705

description: cell-free DNA


title: osk_d5-c_c41


title: osk_d5-c_c42


title: HCC.ct-692

description: cell-free DNA


title: HCC.ct-695

description: cell-free DNA


title: HCC.ct-693

description: cell-free DNA


title: HCC.ct-694

description: cell-free DNA


title: HCC.ct-690

description: cell-free DNA


title: osk_d5-c_c48


title: osk_d5_c63


title: HCC.ct-688

description: cell-free DNA


title: osk_d5_c64


title: osk_d5_c07


title: HCC.ct-687

description: cell-free DNA


title: osk_d5-b_c78


title: HCC.ct-685

description: cell-free DNA


title: osk_d5-b_c70


title: osk_d5-b_c71


title: HCC.ct-686

description: cell-free DNA


title: osk_d5_c39


title: osk_d5_c36


title: HCC.ct-682

description: cell-free DNA


title: HCC.ct-684

description: cell-free DNA


title: osk_d5_c51


title: HCC.ct-683

description: cell-free DNA


title: osk_d5_c35


title: HCC.ct-691

description: cell-free DNA


title: HCC.ct-696

description: cell-free DNA


title: osk_d5_c55


title: HCC.ct-681

description: cell-free DNA


title: HCC.ct-680

description: cell-free DNA


title: HCC.ct-689

description: cell-free DNA


title: HCC.ct-679

description: cell-free DNA


title: osk_d5-b_c25


title: HCC.ct-676

description: cell-free DNA


title: osk_d5-b_c26


title: osk_d5_c02


title: osk_d5-b_c20


title: HCC.ct-678

description: cell-free DNA


title: HCC.ct-675

description: cell-free DNA


title: HCC.ct-674

description: cell-free DNA


title: osk_d5_c40


title: osk_d5_c46


title: osk_d5_c44


title: osk_d5_c45


title: HCC.ct-673

description: cell-free DNA


title: HCC.ct-672

description: cell-free DNA


title: HCC.ct-671

description: cell-free DNA


title: HCC.ct-669

description: cell-free DNA


title: osk_d5-b_c18


title: HCC.ct-668

description: cell-free DNA


title: HCC.ct-677

description: cell-free DNA


title: osk_d5-b_c14


title: osk_d5-b_c17


title: osk_d5-b_c63


title: HCC.ct-665

description: cell-free DNA


title: HCC.ct-666

description: cell-free DNA


title: HCC.ct-667

description: cell-free DNA


title: HCC.ct-670

description: cell-free DNA


title: HCC.ct-662

description: cell-free DNA


title: HCC.ct-664

description: cell-free DNA


title: osk_d5-b_c64


title: HCC.ct-663

description: cell-free DNA


title: osk_d5-b_c10


title: HCC.ct-661

description: cell-free DNA


title: osk_d5-b_c52


title: osk_d5_c05


title: HCC.ct-660

description: cell-free DNA


title: osk_d5-c_c87


title: osk_d5_c49


title: HCC.ct-659

description: cell-free DNA


title: osk_d5-b_c16


title: osk_d5-b_c51


title: osk_d5-b_c53


title: osk_d5-b_c59


title: HCC.ct-657

description: cell-free DNA


title: HCC.ct-658

description: cell-free DNA


title: HCC.ct-656

description: cell-free DNA


title: osk_d5_c58


title: osk_d5_c84


title: HCC.ct-655

description: cell-free DNA


title: HCC.ct-654

description: cell-free DNA


title: osk_d5-b_c48


title: HCC.ct-653

description: cell-free DNA


title: HCC.ct-649

description: cell-free DNA


title: osk_d5-b_c05


title: HCC.ct-652

description: cell-free DNA


title: osk_d5-b_c04


title: osk_d5-b_c94


title: HCC.ct-647

description: cell-free DNA


title: osk_d5-b_c49


title: HCC.ct-646

description: cell-free DNA


title: osk_d5_c15


title: HCC.ct-651

description: cell-free DNA


title: HCC.ct-644

description: cell-free DNA


title: osk_d5-b_c92


title: osk_d5_c10


title: osk_d5_c14


title: HCC.ct-645

description: cell-free DNA


title: HCC.ct-643

description: cell-free DNA


title: HCC.ct-642

description: cell-free DNA


title: osk_d5-b_c93


title: osk_d5_c68


title: osk_d5_c61


title: HCC.ct-641

description: cell-free DNA


title: osk_d5-b_c02


title: osk_d5-b_c07


title: osk_d5-c_c76


title: osk_d5_c89


title: HCC.ct-650

description: cell-free DNA


title: HCC.ct-639

description: cell-free DNA


title: HCC.ct-648

description: cell-free DNA


title: osk_d5_c76


title: HCC.ct-638

description: cell-free DNA


title: osk_d5-c_c95


title: HCC.ct-636

description: cell-free DNA


title: osk_d5_c70


title: HCC.ct-635

description: cell-free DNA


title: HCC.ct-637

description: cell-free DNA


title: osk_d5-b_c45


title: HCC.ct-634

description: cell-free DNA


title: HCC.ct-632

description: cell-free DNA


title: osk_d3_c71


title: HCC.ct-631

description: cell-free DNA


title: HCC.ct-640

description: cell-free DNA


title: osk_d5-b_c40


title: osk_d3-c_c19


title: osk_d5-b_c43


title: HCC.ct-630

description: cell-free DNA


title: osk_d3-c_c11


title: osk_d3-c_c10


title: HCC.ct-628

description: cell-free DNA


title: osk_d3-c_c15


title: HCC.ct-627

description: cell-free DNA


title: osk_d3-c_c14


title: osk_d3-c_c13


title: HCC.ct-626

description: cell-free DNA


title: HCC.ct-624

description: cell-free DNA


title: osk_d5_c25


title: osk_d3-c_c16


title: osk_d3_c95


title: HCC.ct-622

description: cell-free DNA


title: HCC.ct-623

description: cell-free DNA


title: osk_d3-c_c41


title: osk_d3-b_c63


title: osk_d3-b_c62


title: HCC.ct-629

description: cell-free DNA


title: HCC.ct-620

description: cell-free DNA


title: osk_d3-b_c69


title: osk_d3-b_c68


title: HCC.ct-619

description: cell-free DNA


title: HCC.ct-616

description: cell-free DNA


title: osk_d3-c_c12


title: HCC.ct-618

description: cell-free DNA


title: HCC.ct-617

description: cell-free DNA


title: osk_d3_c96


title: HCC.ct-615

description: cell-free DNA


title: osk_d3-c_c58


title: osk_d3-c_c17


title: HCC.ct-613

description: cell-free DNA


title: osk_d3-c_c54


title: osk_d3-c_c59


title: HCC.ct-625

description: cell-free DNA


title: HCC.ct-621

description: cell-free DNA


title: HCC.ct-609

description: cell-free DNA


title: HCC.ct-612

description: cell-free DNA


title: osk_d3-c_c50


title: HCC.ct-608

description: cell-free DNA


title: HCC.ct-611

description: cell-free DNA


title: HCC.ct-610

description: cell-free DNA


title: osk_d3_c47


title: osk_d3-c_c51


title: HCC.ct-607

description: cell-free DNA


title: HCC.ct-606

description: cell-free DNA


title: osk_d3-c_c52


title: HCC.ct-605

description: cell-free DNA


title: osk_d3_c56


title: osk_d3_c50


title: osk_d3_c62


title: HCC.ct-614

description: cell-free DNA


title: HCC.ct-602

description: cell-free DNA


title: osk_d3_c72


title: osk_d3-c_c56


title: HCC.ct-633

description: cell-free DNA


title: osk_d3_c24


title: osk_d3-c_c57


title: osk_d3-c_c74


title: osk_d3-c_c42


title: osk_d3_c23


title: HCC.ct-599

description: cell-free DNA


title: HCC.ct-596

description: cell-free DNA


title: HCC.ct-598

description: cell-free DNA


title: osk_d3-b_c12


title: HCC.ct-600

description: cell-free DNA


title: osk_d3-c_c26


title: osk_d3-c_c79


title: HCC.ct-595

description: cell-free DNA


title: HCC.ct-597

description: cell-free DNA


title: HCC.ct-601

description: cell-free DNA


title: HCC.ct-604

description: cell-free DNA


title: HCC.ct-603

description: cell-free DNA


title: HCC.ct-594

description: cell-free DNA


title: HCC.ct-593

description: cell-free DNA


title: osk_d3-b_c88


title: osk_d3-c_c73


title: osk_d3-c_c71


title: osk_d3-c_c20


title: HCC.ct-591

description: cell-free DNA


title: osk_d3_c10


title: HCC.ct-592

description: cell-free DNA


title: HCC.ct-589

description: cell-free DNA


title: osk_d3_c17


title: osk_d3_c19


title: HCC.ct-587

description: cell-free DNA


title: HCC.ct-588

description: cell-free DNA


title: osk_d3-c_c21


title: osk_d3-c_c23


title: HCC.ct-585

description: cell-free DNA


title: osk_d3-c_c28


title: osk_d3-c_c24


title: HCC.ct-586

description: cell-free DNA


title: osk_d3_c46


title: HCC.ct-583

description: cell-free DNA


title: HCC.ct-584

description: cell-free DNA


title: osk_d3-b_c54


title: osk_d3-b_c53


title: osk_d3-c_c29


title: osk_d3-b_c58


title: osk_d3-b_c56


title: HCC.ct-582

description: cell-free DNA


title: HCC.ct-580

description: cell-free DNA


title: osk_d3-c_c08


title: HCC.ct-590

description: cell-free DNA


title: HCC.ct-577

description: cell-free DNA


title: osk_d3-c_c06


title: osk_d3-c_c07


title: HCC.ct-579

description: cell-free DNA


title: HCC.ct-578

description: cell-free DNA


title: HCC.ct-576

description: cell-free DNA


title: HCC.ct-575

description: cell-free DNA


title: osk_d3-c_c04


title: HCC.ct-574

description: cell-free DNA


title: osk_d3-c_c01


title: HCC.ct-573

description: cell-free DNA


title: HCC.ct-581

description: cell-free DNA


title: osk_d3-c_c68


title: HCC.ct-572

description: cell-free DNA


title: HCC.ct-571

description: cell-free DNA


title: osk_d3-c_c69


title: osk_d3_c69


title: osk_d3_c68


title: osk_d3-c_c60


title: HCC.ct-567

description: cell-free DNA


title: HCC.ct-570

description: cell-free DNA


title: HCC.ct-569

description: cell-free DNA


title: HCC.ct-564

description: cell-free DNA


title: HCC.ct-568

description: cell-free DNA


title: HCC.ct-563

description: cell-free DNA


title: osk_d3-c_c64


title: osk_d3_c65


title: osk_d3-c_c62


title: HCC.ct-566

description: cell-free DNA


title: HCC.ct-565

description: cell-free DNA


title: osk_d3-c_c65


title: HCC.ct-561

description: cell-free DNA


title: osk_d3_c86


title: HCC.ct-560

description: cell-free DNA


title: HCC.ct-559

description: cell-free DNA


title: osk_d3-c_c30


title: HCC.ct-558

description: cell-free DNA


title: osk_d3-c_c31


title: osk_d3-c_c61


title: osk_d3-b_c05


title: osk_d3-b_c09


title: HCC.ct-556

description: cell-free DNA


title: HCC.ct-555

description: cell-free DNA


title: osk_d3-c_c63


title: osk_d3-c_c66


title: HCC.ct-562

description: cell-free DNA


title: osk_d3-b_c03


title: osk_d3-b_c01


title: osk_d3_c27


title: HCC.ct-550

description: cell-free DNA


title: HCC.ct-552

description: cell-free DNA


title: osk_d3_c26


title: HCC.ct-551

description: cell-free DNA


title: HCC.ct-554

description: cell-free DNA


title: HCC.ct-549

description: cell-free DNA


title: HCC.ct-548

description: cell-free DNA


title: osk_d3_c28


title: osk_d3-c_c32


title: osk_d3-c_c37


title: osk_d3-b_c89


title: HCC.ct-547

description: cell-free DNA


title: osk_d3-c_c36


title: osk_d3-c_c35


title: osk_d3-c_c34


title: HCC.ct-557

description: cell-free DNA


title: HCC.ct-546

description: cell-free DNA


title: osk_d3-c_c39


title: HCC.ct-545

description: cell-free DNA


title: osk_d3-c_c38


title: HCC.ct-543

description: cell-free DNA


title: osk_d3-b_c46


title: HCC.ct-544

description: cell-free DNA


title: HCC.ct-542

description: cell-free DNA


title: HCC.ct-541

description: cell-free DNA


title: osk_d3-b_c44


title: HCC.ct-540

description: cell-free DNA


title: osk_d3-b_c34


title: HCC.ct-539

description: cell-free DNA


title: HCC.ct-538

description: cell-free DNA


title: HCC.ct-537

description: cell-free DNA


title: osk_d3-b_c37


title: osk_d3-b_c31


title: osk_d3-b_c30


title: osk_d3-b_c35


title: HCC.ct-535

description: cell-free DNA


title: HCC.ct-536

description: cell-free DNA


title: osk_d3-c_c67


title: HCC.ct-534

description: cell-free DNA


title: HCC.ct-533

description: cell-free DNA


title: osk_d3-b_c38


title: osk_d3_c73


title: HCC.ct-532

description: cell-free DNA


title: HCC.ct-530

description: cell-free DNA


title: HCC.ct-531

description: cell-free DNA


title: HCC.ct-529

description: cell-free DNA


title: osk_d3-c_c70


title: HCC.ct-528

description: cell-free DNA


title: HCC.ct-527

description: cell-free DNA


title: osk_d3-c_c05


title: osk_d3-c_c09


title: osk_d3-c_c02


title: osk_d3-c_c77


title: HCC.ct-526

description: cell-free DNA


title: osk_d3-c_c03


title: HCC.ct-525

description: cell-free DNA


title: osk_d3_c85


title: osk_d3_c89


title: osk_d3-c_c72


title: HCC.ct-524

description: cell-free DNA


title: HCC.ct-523

description: cell-free DNA


title: osk_d3-b_c72


title: osk_d3-b_c79


title: HCC.ct-522

description: cell-free DNA


title: HCC.ct-521

description: cell-free DNA


title: HCC.ct-520

description: cell-free DNA


title: osk_d3-b_c76


title: HCC.ct-553

description: cell-free DNA


title: osk_d3-b_c74


title: HCC.ct-519

description: cell-free DNA


title: osk_d3-b_c75


title: osk_d3-c_c76


title: HCC.ct-518

description: cell-free DNA


title: HCC.ct-516

description: cell-free DNA


title: osk_d3_c35


title: HCC.ct-517

description: cell-free DNA


title: osk_d3_c30


title: osk_d3_c32


title: HCC.ct-515

description: cell-free DNA


title: HCC.ct-514

description: cell-free DNA


title: osk_d3-c_c40


title: HCC.ct-513

description: cell-free DNA


title: osk_d3_c44


title: HCC.ct-512

description: cell-free DNA


title: osk_d3-c_c43


title: osk_d3-c_c45


title: HCC.ct-511

description: cell-free DNA


title: HCC.ct-509

description: cell-free DNA


title: HCC.ct-510

description: cell-free DNA


title: HCC.ct-506

description: cell-free DNA


title: HCC.ct-507

description: cell-free DNA


title: osk_d3_c48


title: osk_d3-c_c18


title: osk_d3_c42


title: osk_d3-b_c23


title: osk_d3-c_c49


title: HCC.ct-505

description: cell-free DNA


title: HCC.ct-503

description: cell-free DNA


title: osk_d3-b_c22


title: HCC.ct-504

description: cell-free DNA


title: osk_d3-b_c25


title: osk_d3-b_c24


title: osk_d3-b_c27


title: HCC.ct-500

description: cell-free DNA


title: HCC.ct-502

description: cell-free DNA


title: HCC.ct-501

description: cell-free DNA


title: osk_d3-b_c26


title: osk_d3-c_c33


title: osk_d3-c_c44


title: HCC.ct-499

description: cell-free DNA


title: HCC.ct-497

description: cell-free DNA


title: HCC.ct-498

description: cell-free DNA


title: osk_d3-b_c90


title: osk_d3-c_c47


title: HCC.ct-496

description: cell-free DNA


title: HCC.ct-495

description: cell-free DNA


title: osk_d3-b_c91


title: HCC.ct-508

description: cell-free DNA


title: HCC.ct-494

description: cell-free DNA


title: osk_d3-b_c93


title: osk_d3-b_c92


title: osk_d3_c08


title: osk_d3-c_c80


title: osk_d3-c_c81


title: osk_d3_c04


title: HCC.ct-490

description: cell-free DNA


title: HCC.ct-491

description: cell-free DNA


title: HCC.ct-489

description: cell-free DNA


title: osk_d3_c03


title: osk_d2-c_c68


title: HCC.ct-486

description: cell-free DNA


title: osk_d2-b_c30


title: HCC.ct-485

description: cell-free DNA


title: osk_d2-b_c33


title: HCC.ct-484

description: cell-free DNA


title: osk_d2-b_c32


title: osk_d2-b_c36


title: osk_d2_c17


title: HCC.ct-493

description: cell-free DNA


title: osk_d2_c18


title: HCC.ct-481

description: cell-free DNA


title: HCC.ct-480

description: cell-free DNA


title: HCC.ct-482

description: cell-free DNA


title: HCC.ct-483

description: cell-free DNA


title: HCC.ct-479

description: cell-free DNA


title: osk_d2_c14


title: osk_d2_c15


title: HCC.ct-478

description: cell-free DNA


title: osk_d3_c05


title: osk_d2_c12


title: osk_d2_c10


title: HCC.ct-475

description: cell-free DNA


title: HCC.ct-476

description: cell-free DNA


title: HCC.ct-477

description: cell-free DNA


title: osk_d2_c13


title: HCC.ct-488

description: cell-free DNA


title: osk_d2_c11


title: osk_d2-c_c60


title: HCC.ct-487

description: cell-free DNA


title: HCC.ct-472

description: cell-free DNA


title: osk_d2-c_c27


title: HCC.ct-474

description: cell-free DNA


title: HCC.ct-473

description: cell-free DNA


title: HCC.ct-470

description: cell-free DNA


title: osk_d2-b_c82


title: osk_d2-b_c31


title: osk_d2-b_c83


title: osk_d2_c40


title: osk_d2-c_c01


title: HCC.ct-467

description: cell-free DNA


title: HCC.ct-465

description: cell-free DNA


title: HCC.ct-471

description: cell-free DNA


title: HCC.ct-469

description: cell-free DNA


title: HCC.ct-468

description: cell-free DNA


title: osk_d2_c47


title: HCC.ct-466

description: cell-free DNA


title: osk_d2_c45


title: HCC.ct-464

description: cell-free DNA


title: osk_d2_c72


title: osk_d2-b_c38


title: HCC.ct-463

description: cell-free DNA


title: HCC.ct-462

description: cell-free DNA


title: HCC.ct-461

description: cell-free DNA


title: osk_d2-b_c92


title: HCC.ct-460

description: cell-free DNA


title: osk_d2-c_c55


title: HCC.ct-459

description: cell-free DNA


title: HCC.ct-458

description: cell-free DNA


title: osk_d2-c_c57


title: osk_d2_c42


title: HCC.ct-492

description: cell-free DNA


title: osk_d2-c_c50


title: HCC.ct-455

description: cell-free DNA


title: osk_d2-c_c51


title: HCC.ct-454

description: cell-free DNA


title: osk_d2_c09


title: HCC.ct-452

description: cell-free DNA


title: osk_d2-c_c52


title: HCC.ct-457

description: cell-free DNA


title: HCC.ct-453

description: cell-free DNA


title: HCC.ct-451

description: cell-free DNA


title: osk_d2_c16


title: osk_d2-b_c46


title: HCC.ct-450

description: cell-free DNA


title: osk_d2_c49


title: osk_d2_c06


title: HCC.ct-448

description: cell-free DNA


title: osk_d2_c04


title: osk_d2_c01


title: osk_d2_c94


title: osk_d2_c07


title: HCC.ct-447

description: cell-free DNA


title: HCC.ct-446

description: cell-free DNA


title: osk_d2_c70


title: osk_d2_c03


title: HCC.ct-456

description: cell-free DNA


title: HCC.ct-445

description: cell-free DNA


title: osk_d2-c_c64


title: osk_d2-c_c62


title: osk_d2-b_c76


title: HCC.ct-443

description: cell-free DNA


title: HCC.ct-442

description: cell-free DNA


title: osk_d2-b_c25


title: HCC.ct-439

description: cell-free DNA


title: HCC.ct-440

description: cell-free DNA


title: HCC.ct-438

description: cell-free DNA


title: osk_d2-b_c28


title: HCC.ct-449

description: cell-free DNA


title: osk_d2-c_c10


title: osk_d2-c_c66


title: osk_d2-c_c11


title: HCC.ct-437

description: cell-free DNA


title: osk_d2-c_c15


title: HCC.ct-435

description: cell-free DNA


title: HCC.ct-436

description: cell-free DNA


title: HCC.ct-434

description: cell-free DNA


title: osk_d2-c_c16


title: HCC.ct-444

description: cell-free DNA


title: HCC.ct-432

description: cell-free DNA


title: osk_d2-c_c67


title: osk_d2_c34


title: HCC.ct-431

description: cell-free DNA


title: osk_d2-b_c27


title: HCC.ct-429

description: cell-free DNA


title: HCC.ct-433

description: cell-free DNA


title: osk_d2-b_c26


title: osk_d2_c39


title: osk_d2_c36


title: HCC.ct-427

description: cell-free DNA


title: osk_d2_c37


title: HCC.ct-430

description: cell-free DNA


title: HCC.ct-428

description: cell-free DNA


title: osk_d2-b_c80


title: osk_d2-b_c81


title: osk_d2-b_c84


title: osk_d2-b_c85


title: osk_d2_c87


title: HCC.ct-426

description: cell-free DNA


title: HCC.ct-425

description: cell-free DNA


title: HCC.ct-423

description: cell-free DNA


title: HCC.ct-424

description: cell-free DNA


title: HCC.ct-422

description: cell-free DNA


title: osk_d2-b_c89


title: osk_d2-b_c78


title: HCC.ct-418

description: cell-free DNA


title: HCC.ct-417

description: cell-free DNA


title: HCC.ct-441

description: cell-free DNA


title: HCC.ct-419

description: cell-free DNA


title: HCC.ct-420

description: cell-free DNA


title: HCC.ct-421

description: cell-free DNA


title: osk_d2-b_c87


title: osk_d2-b_c73


title: osk_d2-b_c79


title: HCC.ct-414

description: cell-free DNA


title: osk_d2-b_c37


title: osk_d2_c82


title: osk_d2-b_c35


title: osk_d2_c80


title: osk_d2-c_c14


title: HCC.ct-415

description: cell-free DNA


title: HCC.ct-416

description: cell-free DNA


title: HCC.ct-412

description: cell-free DNA


title: HCC.ct-413

description: cell-free DNA


title: osk_d2_c89


title: osk_d2_c69


title: osk_d2_c67


title: HCC.ct-411

description: cell-free DNA


title: HCC.ct-410

description: cell-free DNA


title: osk_d2_c66


title: osk_d2-b_c39


title: HCC.ct-409

description: cell-free DNA


title: HCC.ct-408

description: cell-free DNA


title: HCC.ct-407

description: cell-free DNA


title: HCC.ct-406

description: cell-free DNA


title: osk_d2_c62


title: osk_d2-c_c09


title: osk_d2_c60


title: osk_d2-c_c03


title: HCC.ct-404

description: cell-free DNA


title: osk_d2-c_c04


title: HCC.ct-402

description: cell-free DNA


title: HCC.ct-403

description: cell-free DNA


title: HCC.ct-401

description: cell-free DNA


title: osk_d2-b_c44


title: osk_d2-b_c45


title: osk_d2-b_c40


title: osk_d2-b_c41


title: HCC.ct-399

description: cell-free DNA


title: HCC.ct-397

description: cell-free DNA


title: osk_d2-c_c78


title: osk_d2-c_c76


title: osk_d2_c65


title: HCC.ct-396

description: cell-free DNA


title: osk_d2-c_c77


title: osk_d2-c_c74


title: HCC.ct-395

description: cell-free DNA


title: osk_d2_c61


title: osk_d2-c_c70


title: HCC.ct-405

description: cell-free DNA


title: HCC.ct-393

description: cell-free DNA


title: HCC.ct-392

description: cell-free DNA


title: osk_d2-c_c71


title: HCC.ct-391

description: cell-free DNA


title: osk_d2-b_c34


title: osk_d2_c92


title: HCC.ct-389

description: cell-free DNA


title: HCC.ct-398

description: cell-free DNA


title: osk_d2_c23


title: HCC.ct-400

description: cell-free DNA


title: HCC.ct-388

description: cell-free DNA


title: HCC.ct-387

description: cell-free DNA


title: osk_d2_c22


title: HCC.ct-386

description: cell-free DNA


title: HCC.ct-385

description: cell-free DNA


title: osk_d2-c_c53


title: osk_d2-c_c58


title: osk_d2_c24


title: HCC.ct-390

description: cell-free DNA


title: osk_d2_c21


title: HCC.ct-394

description: cell-free DNA


title: HCC.ct-384

description: cell-free DNA


title: HCC.ct-382

description: cell-free DNA


title: osk_d2-c_c63


title: osk_d2-c_c25


title: osk_d2_c20


title: osk_d2-c_c26


title: osk_d2_c96


title: HCC.ct-383

description: cell-free DNA


title: HCC.ct-380

description: cell-free DNA


title: HCC.ct-381

description: cell-free DNA


title: osk_d2-c_c23


title: HCC.ct-379

description: cell-free DNA


title: HCC.ct-378

description: cell-free DNA


title: osk_d2-b_c77


title: HCC.ct-377

description: cell-free DNA


title: osk_d2-c_c32


title: HCC.ct-376

description: cell-free DNA


title: HCC.ct-375

description: cell-free DNA


title: osk_d2_c93


title: osk_d2-b_c96


title: osk_d2-b_c90


title: HCC.ct-373

description: cell-free DNA


title: osk_d2-b_c42


title: HCC.ct-372

description: cell-free DNA


title: osk_d2-c_c56


title: osk_d2-b_c91


title: HCC.ct-371

description: cell-free DNA


title: HCC.ct-374

description: cell-free DNA


title: osk_d2_c52


title: osk_d2_c53


title: HCC.ct-369

description: cell-free DNA


title: HCC.ct-367

description: cell-free DNA


title: HCC.ct-366

description: cell-free DNA


title: osk_d2_c51


title: osk_d2_c54


title: osk_d2_c55


title: osk_d2_c58


title: osk_d2_c59


title: HCC.ct-365

description: cell-free DNA


title: HCC.ct-364

description: cell-free DNA


title: HCC.ct-363

description: cell-free DNA


title: osk_d2-c_c13


title: HCC.ct-362

description: cell-free DNA


title: osk_d1_c46


title: HCC.ct-361

description: cell-free DNA


title: HCC.ct-360

description: cell-free DNA


title: osk_d1_c47


title: osk_d1_c44


title: HCC.ct-370

description: cell-free DNA


title: osk_d1_c43


title: osk_d1_c40


title: HCC.ct-368

description: cell-free DNA


title: HCC.ct-358

description: cell-free DNA


title: HCC.ct-356

description: cell-free DNA


title: HCC.ct-357

description: cell-free DNA


title: HCC.ct-359

description: cell-free DNA


title: HCC.ct-355

description: cell-free DNA


title: osk_d1_c45


title: osk_d1_c41


title: osk_d1_c49


title: HCC.ct-354

description: cell-free DNA


title: osk_d1_c20


title: HCC.ct-353

description: cell-free DNA


title: HCC.ct-352

description: cell-free DNA


title: osk_d1_c23


title: osk_d1_c26


title: HCC.ct-351

description: cell-free DNA


title: HCC.ct-350

description: cell-free DNA


title: osk_d1_c48


title: osk_d1-b_c65


title: osk_d1-b_c64


title: HCC.ct-348

description: cell-free DNA


title: HCC.ct-347

description: cell-free DNA


title: osk_d1-b_c63


title: HCC.ct-346

description: cell-free DNA


title: osk_d1_c22


title: HCC.ct-345

description: cell-free DNA


title: HCC.ct-344

description: cell-free DNA


title: osk_d1_c123


title: HCC.ct-343

description: cell-free DNA


title: HCC.ct-342

description: cell-free DNA


title: osk_d1_c15


title: osk_d1_c11


title: HCC.ct-340

description: cell-free DNA


title: HCC.ct-341

description: cell-free DNA


title: osk_d1_c13


title: osk_d1_c122


title: osk_d1_c10


title: osk_d1_c12


title: HCC.ct-349

description: cell-free DNA


title: HCC.ct-338

description: cell-free DNA


title: HCC.ct-337

description: cell-free DNA


title: osk_d1_c17


title: HCC.ct-335

description: cell-free DNA


title: HCC.ct-334

description: cell-free DNA


title: HCC.ct-336

description: cell-free DNA


title: osk_d1_c42


title: osk_d1-b_c60


title: osk_d1_c14


title: osk_d1-b_c57


title: HCC.ct-333

description: cell-free DNA


title: osk_d1_c16


title: HCC.ct-332

description: cell-free DNA


title: osk_d1-b_c59


title: HCC.ct-331

description: cell-free DNA


title: osk_d1_c55


title: HCC.ct-330

description: cell-free DNA


title: HCC.ct-339

description: cell-free DNA


title: HCC.ct-329

description: cell-free DNA


title: osk_d1_c50


title: HCC.ct-327

description: cell-free DNA


title: osk_d1_c53


title: HCC.ct-325

description: cell-free DNA


title: osk_d1_c52


title: HCC.ct-328

description: cell-free DNA


title: osk_d1_c21


title: HCC.ct-326

description: cell-free DNA


title: osk_d1_c58


title: osk_d1_c25


title: HCC.ct-323

description: cell-free DNA


title: osk_d1-b_c22


title: HCC.ct-324

description: cell-free DNA


title: HCC.ct-322

description: cell-free DNA


title: osk_d1_c27


title: osk_d1_c28


title: osk_d1-b_c15


title: osk_d1_c29


title: HCC.ct-320

description: cell-free DNA


title: HCC.ct-318

description: cell-free DNA


title: HCC.ct-319

description: cell-free DNA


title: HCC.ct-317

description: cell-free DNA


title: osk_d1_c01


title: HCC.ct-316

description: cell-free DNA


title: osk_d1_c54


title: osk_d1_c65


title: HCC.ct-315

description: cell-free DNA


title: osk_d1_c64


title: HCC.ct-314

description: cell-free DNA


title: HCC.ct-312

description: cell-free DNA


title: osk_d1_c60


title: osk_d1_c66


title: HCC.ct-313

description: cell-free DNA


title: osk_d1_c127


title: osk_d1_c37


title: osk_d1_c62


title: HCC.ct-321

description: cell-free DNA


title: HCC.ct-310

description: cell-free DNA


title: HCC.ct-309

description: cell-free DNA


title: HCC.ct-308

description: cell-free DNA


title: osk_d1_c59


title: HCC.ct-307

description: cell-free DNA


title: osk_d1_c36


title: HCC.ct-306

description: cell-free DNA


title: osk_d1_c69


title: osk_d1_c31


title: HCC.ct-305

description: cell-free DNA


title: osk_d1_c34


title: osk_d1_c30


title: HCC.ct-304

description: cell-free DNA


title: HCC.ct-303

description: cell-free DNA


title: osk_d1_c68


title: HCC.ct-302

description: cell-free DNA


title: osk_d1_c39


title: osk_d1_c191


title: HCC.ct-301

description: cell-free DNA


title: HCC.ct-311

description: cell-free DNA


title: HCC.ct-299

description: cell-free DNA


title: osk_d1_c82


title: HCC.ct-298

description: cell-free DNA


title: osk_d1_c80


title: HCC.ct-297

description: cell-free DNA


title: osk_d1_c81


title: HCC.ct-296

description: cell-free DNA


title: osk_d1_c86


title: osk_d1_c33


title: HCC.ct-295

description: cell-free DNA


title: osk_d1_c87


title: HCC.ct-292

description: cell-free DNA


title: HCC.ct-293

description: cell-free DNA


title: HCC.ct-294

description: cell-free DNA


title: osk_d1_c85


title: osk_d1_c84


title: HCC.ct-291

description: cell-free DNA


title: HCC.ct-290

description: cell-free DNA


title: osk_d1_c18


title: osk_d1_c88


title: osk_d1_c89


title: HCC.ct-288

description: cell-free DNA


title: HCC.ct-289

description: cell-free DNA


title: osk_d1_c83


title: HCC.ct-286

description: cell-free DNA


title: osk_d1_c70


title: HCC.ct-287

description: cell-free DNA


title: osk_d1_c71


title: HCC.ct-300

description: cell-free DNA


title: HCC.ct-284

description: cell-free DNA


title: osk_d1_c77


title: osk_d1_c79


title: HCC.ct-282

description: cell-free DNA


title: osk_d1_c74


title: osk_d1_c78


title: HCC.ct-281

description: cell-free DNA


title: osk_d1_c138


title: osk_d1-b_c71


title: HCC.ct-280

description: cell-free DNA


title: osk_d1_c72


title: HCC.ct-279

description: cell-free DNA


title: HCC.ct-277

description: cell-free DNA


title: osk_d1_c09


title: HCC.ct-276

description: cell-free DNA


title: osk_d1_c03


title: HCC.ct-275

description: cell-free DNA


title: HCC.ct-273

description: cell-free DNA


title: osk_d1_c76


title: osk_d1_c04


title: HCC.ct-285

description: cell-free DNA


title: osk_d1_c06


title: HCC.ct-283

description: cell-free DNA


title: osk_d1_c07


title: osk_d1_c05


title: HCC.ct-272

description: cell-free DNA


title: osk_d1_c124


title: HCC.ct-270

description: cell-free DNA


title: osk_d1_c91


title: HCC.ct-271

description: cell-free DNA


title: HCC.ct-268

description: cell-free DNA


title: HCC.ct-267

description: cell-free DNA


title: osk_d1_c131


title: osk_d1_c93


title: osk_d1_c73


title: osk_d1_c95


title: HCC.ct-264

description: cell-free DNA


title: HCC.ct-278

description: cell-free DNA


title: HCC.ct-274

description: cell-free DNA


title: osk_d1_c92


title: HCC.ct-266

description: cell-free DNA


title: osk_d1_c96


title: osk_d1_c174


title: HCC.ct-262

description: cell-free DNA


title: HCC.ct-265

description: cell-free DNA


title: osk_d1_c179


title: HCC.ct-263

description: cell-free DNA


title: osk_d1_c173


title: HCC.ct-261

description: cell-free DNA


title: HCC.ct-260

description: cell-free DNA


title: osk_d0-c_c16


title: HCC.ct-269

description: cell-free DNA


title: osk_d0_c84


title: HCC.ct-259

description: cell-free DNA


title: osk_d1_c135


title: HCC.ct-258

description: cell-free DNA


title: osk_d1_c90


title: osk_d0-b_c23


title: HCC.ct-257

description: cell-free DNA


title: osk_d0-b_c20


title: HCC.ct-256

description: cell-free DNA


title: HCC.ct-255

description: cell-free DNA


title: osk_d0-b_c21


title: HCC.ct-252

description: cell-free DNA


title: osk_d0-b_c24


title: osk_d0-c_c26


title: osk_d0-c_c23


title: osk_d1_c94


title: osk_d0-c_c20


title: HCC.ct-249

description: cell-free DNA


title: HCC.ct-254

description: cell-free DNA


title: HCC.ct-253

description: cell-free DNA


title: HCC.ct-246

description: cell-free DNA


title: HCC.ct-247

description: cell-free DNA


title: osk_d0_c46


title: osk_d0-c_c25


title: osk_d0-c_c24


title: HCC.ct-250

description: cell-free DNA


title: osk_d0-c_c22


title: osk_d0-c_c39


title: HCC.ct-251

description: cell-free DNA


title: osk_d0-b_c50


title: HCC.ct-245

description: cell-free DNA


title: osk_d0_c93


title: osk_d0_c90


title: HCC.ct-243

description: cell-free DNA


title: HCC.ct-248

description: cell-free DNA


title: osk_d0-c_c29


title: HCC.ct-244

description: cell-free DNA


title: osk_d0-c_c68


title: osk_d0-b_c70


title: HCC.ct-240

description: cell-free DNA


title: osk_d0-b_c71


title: HCC.ct-238

description: cell-free DNA


title: HCC.ct-239

description: cell-free DNA


title: osk_d0-c_c65


title: HCC.ct-235

description: cell-free DNA


title: osk_d0-c_c18


title: HCC.ct-234

description: cell-free DNA


title: HCC.ct-237

description: cell-free DNA


title: HCC.ct-231

description: cell-free DNA


title: osk_d0_c91


title: HCC.ct-236

description: cell-free DNA


title: osk_d0-c_c64


title: HCC.ct-242

description: cell-free DNA


title: HCC.ct-230

description: cell-free DNA


title: HCC.ct-232

description: cell-free DNA


title: HCC.ct-229

description: cell-free DNA


title: osk_d0-c_c66


title: osk_d0-c_c17


title: osk_d0-c_c15


title: osk_d0_c41


title: osk_d0_c40


title: osk_d0-c_c52


title: osk_d0-c_c54


title: HCC.ct-225

description: cell-free DNA


title: HCC.ct-227

description: cell-free DNA


title: HCC.ct-228

description: cell-free DNA


title: osk_d0_c38


title: HCC.ct-226

description: cell-free DNA


title: osk_d0-c_c55


title: HCC.ct-233

description: cell-free DNA


title: osk_d0-c_c50


title: osk_d0-c_c59


title: HCC.ct-223

description: cell-free DNA


title: HCC.ct-221

description: cell-free DNA


title: HCC.ct-224

description: cell-free DNA


title: osk_d0_c94


title: osk_d0_c39


title: osk_d0_c73


title: HCC.ct-222

description: cell-free DNA


title: osk_d0_c81


title: osk_d0_c83


title: HCC.ct-216

description: cell-free DNA


title: osk_d0_c77


title: osk_d0_c78


title: HCC.ct-215

description: cell-free DNA


title: osk_d0_c80


title: HCC.ct-218

description: cell-free DNA


title: HCC.ct-241

description: cell-free DNA


title: HCC.ct-219

description: cell-free DNA


title: HCC.ct-214

description: cell-free DNA


title: HCC.ct-220

description: cell-free DNA


title: osk_d0_c87


title: osk_d0-c_c56


title: HCC.ct-213

description: cell-free DNA


title: HCC.ct-212

description: cell-free DNA


title: osk_d0_c89


title: HCC.ct-211

description: cell-free DNA


title: osk_d0_c37


title: osk_d0_c36


title: osk_d0_c33


title: osk_d0_c31


title: osk_d0-c_c58


title: HCC.ct-210

description: cell-free DNA


title: HCC.ct-207

description: cell-free DNA


title: HCC.ct-208

description: cell-free DNA


title: HCC.ct-209

description: cell-free DNA


title: osk_d0-c_c09


title: HCC.ct-217

description: cell-free DNA


title: osk_d0-c_c08


title: HCC.ct-206

description: cell-free DNA


title: HCC.ct-202

description: cell-free DNA


title: HCC.ct-204

description: cell-free DNA


title: HCC.ct-205

description: cell-free DNA


title: HCC.ct-203

description: cell-free DNA


title: osk_d0-c_c05


title: HCC.ct-201

description: cell-free DNA


title: osk_d0-c_c02


title: osk_d0-c_c03


title: osk_d0-c_c63


title: osk_d0-c_c06


title: osk_d0-c_c07


title: HCC.ct-200

description: cell-free DNA


title: HCC.ct-198

description: cell-free DNA


title: HCC.ct-199

description: cell-free DNA


title: osk_d0_c79


title: osk_d0-b_c08


title: HCC.ct-197

description: cell-free DNA


title: osk_d0-b_c01


title: HCC.ct-196

description: cell-free DNA


title: osk_d0-b_c04


title: osk_d0-b_c03


title: HCC.ct-193

description: cell-free DNA


title: osk_d0-b_c02


title: HCC.ct-194

description: cell-free DNA


title: HCC.ct-195

description: cell-free DNA


title: HCC.ct-192

description: cell-free DNA


title: osk_d0-b_c05


title: HCC.ct-191

description: cell-free DNA


title: HCC.ct-189

description: cell-free DNA


title: osk_d0-c_c45


title: osk_d0-c_c40


title: HCC.ct-190

description: cell-free DNA


title: HCC.ct-187

description: cell-free DNA


title: osk_d0_c96


title: HCC.ct-188

description: cell-free DNA


title: osk_d0_c42


title: HCC.ct-186

description: cell-free DNA