title: HET (Q111) 6 month Male striatum microRNA rep3

description:
23411_1_518L_striatum_Q111_HET_M_L14.V14.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Female striatum microRNA rep3

status: Public on Feb 15 2016

type: SRA

city: Princeton

first: Jeff

last: Aaronson

state: New Jersey

address: 155 Village Boulevard, Suite 200

department: Discovery & Systems Biology

country: USA

institute: CHDI

description:
23515_1_526L_striatum_Q111_HET_F_L16.V16.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

library_source: transcriptomic

data_processing:
Illumina CASAVA 1.8.2 software used for basecalling
Genome mapped via Omnisoft OSA 2.0
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence by using fastq-mcf sequence quality filter, clipping and processor with following settings:
Trimming  /Mode=TrimByQuality /ReadTrimQuality=2;
Options  /ParallelJobNumber=4 /PairedEnd=True /FileFormat=FASTQ /AutoPenalty=True /FixedPenalty=2 /Greedy=false /IndelPenalty=2 /DetectIndels=False /MaxMiddleInsertionSize=10 /MaxMiddleDeletionSize=10 /MaxEndInsertionSize=10 /MaxEndDeletionSize=10 /MinDistalEndSize=3 /ExcludeNonUniqueMapping=False /ReportCutoff=10 /WriteReadsInSeparateFiles=True /GenerateSamFiles=False /ThreadNumber=6 /InsertSizeStandardDeviation=40 /ExpectedInsertSize=300 /MatePair=False /InsertOnSameStrand=False /InsertOnDifferentStrand=True /QualityEncoding=Automatic /CompressionMethod=Gzip /Gzip=True /SearchNovelExonJunction=False /ExcludeUnmappedInBam=False /KeepFullRead=False /Replace=False /Platform=ILLUMINA /CompressBam=False;
Genome_build: Genome version Mouse B.38, gene models version Ensembl R.75
Supplementary_files_format_and_content: Text file containing abundance measurements in FPKM
Supplementary_files_format_and_content: Text file containing abundance measurements in counts

molecule: total RNA

organism: Mus musculus

source_name: striatum

extract_protocol:
Tissue specimens were removed, flash frozen on dry ice, and total RNA was harvested using the Qiagen miRNeasy kit. RNA quality and integrity were monitored via Agilent Bioanalyzer. A minimum of 3.75 ug of total RNA were used to collect enriched RNA subfractions for library construction.
RNA libraries were prepared for sequencing using standard Illumina protocols.

tag: strain

tag: tissue

value: striatum

tag: genotype

value: Het (Q111) Knock-In

tag: age

value: 6 month

tag: Sex

value: Female

tag: housing condition

value: housed with Het (Q111) mice


title: HET (Q111) 6 month Female striatum microRNA rep2

description:
23489_1_524L_striatum_Q111_HET_F_L58.V58.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male striatum microRNA rep4

description:
322904_Q111B0017_04_L8.LB26.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: 2 month

value: Male


title: HET (Q111) 6 month Female striatum microRNA rep1

description:
23463_1_522L_striatum_Q111_HET_F_L8.V8.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female striatum microRNA rep3

description:
322901_Q111B0021_02_L8.LB23.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female striatum microRNA rep2

description:
322900_Q111B0021_06_L8.LB22.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female striatum microRNA rep1

description:
322882_Q111B0021_08_L8.LB4.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female striatum microRNA rep4

description:
322907_Q111B0021_10_L1.LB29.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male striatum microRNA rep3

description:
322893_Q111B0017_08_L8.LB15.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Male Liver mRNA rep4

description:
300197_Q20B0009_03_L1.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

molecule: polyA RNA

source_name: Liver

extract_protocol:
Tissue specimens were removed, flash frozen on dry ice, and total RNA was harvested using the Qiagen miRNeasy kit. RNA quality and integrity were monitored via Agilent Bioanalyzer. A minimum of 1.25 ug of total RNA were used to collect polyA-enriched RNA subfractions for library construction.
RNA libraries were prepared for sequencing using standard Illumina protocols.

value: Liver

value: Wild Type

value: 10 month

value: housed with Het (Q20) mice


title: WT 10 month Male Liver mRNA rep2

description:
300209_Q20B0009_09_L1.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female Liver mRNA rep4

description:
300196_Q20B0013_05_L1.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Male Liver mRNA rep1

description:
300242_Q20B0009_05_L2.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female Liver mRNA rep3

description:
300245_Q20B0013_01_L3.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female Liver mRNA rep2

description:
300235_Q20B0013_09_L1.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Female striatum microRNA rep1

description:
323037_Q111B0013_08_L5.LB16.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male Liver mRNA rep3

description:
300265_Q20B0001_01_L7.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male Liver mRNA rep2

description:
300262_Q20B0001_05_L6.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male Liver mRNA rep4

description:
300260_Q20B0001_03_L6.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female Liver mRNA rep3

description:
300264_Q20B0005_07_L7.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female Liver mRNA rep1

description:
300239_Q20B0013_03_L2.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male Liver mRNA rep4

description:
300053_Q20B0017_03_L4.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female Liver mRNA rep1

description:
300261_Q20B0005_05_L6.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male striatum microRNA rep2

description:
322880_Q111B0017_10_L8.LB2.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male striatum microRNA rep1

description:
322875_Q111B0017_06_L7.LB33.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male Liver mRNA rep2

description:
300066_Q20B0017_09_L19
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male Liver mRNA rep1

description:
300034_Q20B0017_05_L8.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male Liver mRNA rep1

description:
300266_Q20B0001_07_L7.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female Liver mRNA rep2

description:
300263_Q20B0005_03_L7.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female Liver mRNA rep4

description:
300259_Q20B0005_09_L6.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female Liver mRNA rep4

description:
300061_Q20B0021_09_L6.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Male Liver mRNA rep3

description:
300220_Q20B0009_01_L31
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male Liver mRNA rep3

description:
300212_Q92B0001_08_L1.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q92) Knock-In

value: housed with Het (Q92) mice


title: HET (Q92) 10 month Male Liver mRNA rep2

description:
300231_Q92B0001_06_L1.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male Liver mRNA rep4

description:
300247_Q92B0001_10_L3.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male Liver mRNA rep1

description:
300237_Q92B0002_05_L1.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female Liver mRNA rep4

description:
300250_Q92B0006_03_L4.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Female striatum microRNA rep1

description:
322864_Q140B0021_06_L2.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q140) Knock-In

value: housed with Het (Q140) mice


title: HET (Q92) 10 month Female Liver mRNA rep3

description:
300200_Q92B0006_05_L29
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female Liver mRNA rep2

description:
300198_Q92B0005_05_L1.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female Liver mRNA rep1

description:
300224_Q92B0006_01_L13
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male Liver mRNA rep3

description:
837_Liver_Q92_HET_M_L8.LB20
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male Liver mRNA rep1

description:
833_Liver_Q92_HET_M_L6.LB18
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male Liver mRNA rep4

description:
839_Liver_Q92_HET_M_L2.LB21
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male Liver mRNA rep3

description:
300054_Q20B0017_07_L25
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female Liver mRNA rep4

description:
847_Liver_Q92_HET_F_L5.LB27
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female Liver mRNA rep3

description:
845_Liver_Q92_HET_F_L6.LB25
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female Liver mRNA rep3

description:
300056_Q20B0021_05_L5.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female Liver mRNA rep1

description:
300031_Q20B0021_07_L8.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female Liver mRNA rep2

description:
300041_Q20B0021_01_L2.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female Liver mRNA rep1

description:
841_Liver_Q92_HET_F_L3.LB22
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female Liver mRNA rep2

description:
843_Liver_Q92_HET_F_L6.LB23
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Female Liver mRNA rep4

description:
300058_Q92B0021_06_L5.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male Liver mRNA rep1

description:
300044_Q92B0017_04_L2.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male Liver mRNA rep3

description:
300080_Q92B0017_08_L2.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male Liver mRNA rep2

description:
300043_Q92B0017_06_L2.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male Liver mRNA rep4

description:
300077_Q92B0017_10_L1.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Female Liver mRNA rep1

description:
300063_Q92B0021_04_L6.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Female Liver mRNA rep3

description:
300079_Q92B0021_10_L1.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Male Liver mRNA rep1

description:
300228_Q80B0001_06_L1.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q80) Knock-In

value: housed with Het (Q80) mice


title: HET (Q80) 10 month Male Liver mRNA rep2

description:
300216_Q80B0001_04_L1.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Male Liver mRNA rep3

description:
300230_Q80B0001_08_L1.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female Liver mRNA rep4

description:
300249_Q80B0005_10_L4.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Female Liver mRNA rep2

description:
300040_Q92B0021_02_L2.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female Liver mRNA rep2

description:
300202_Q80B0005_02_L11
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female Liver mRNA rep1

description:
300225_Q80B0005_04_L1.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female Liver mRNA rep3

description:
300244_Q80B0005_08_L3.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male Liver mRNA rep4

description:
712_Liver_Q80_HET_M_L5.LB4
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male Liver mRNA rep3

description:
710_Liver_Q80_HET_M_L7.LB3
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male Liver mRNA rep2

description:
835_Liver_Q92_HET_M_L7.LB19
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male Liver mRNA rep2

description:
708_Liver_Q80_HET_M_L6.LB2
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female Liver mRNA rep4

description:
720_Liver_Q80_HET_F_L8.LB8
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male Liver mRNA rep1

description:
706_Liver_Q80_HET_M_L8.LB1
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female Liver mRNA rep3

description:
718_Liver_Q80_HET_F_L5.LB7
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female Liver mRNA rep2

description:
716_Liver_Q80_HET_F_L7.LB6
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female Liver mRNA rep1

description:
714_Liver_Q80_HET_F_L3.LB5
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver mRNA rep4

description:
300033_Q80B0017_04_L8.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver mRNA rep5

description:
300029_Q80B0021_10_L2
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver mRNA rep3

description:
300064_Q80B0017_06_L6.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver mRNA rep2

description:
300074_Q80B0017_10_L8.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver mRNA rep1

description:
300065_Q80B0017_08_L7.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Female Liver mRNA rep2

description:
300059_Q80B0021_08_L5.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male Liver mRNA rep2

description:
300221_Q20B0009_04_L1.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q20) Knock-In


title: HET (Q20) 10 month Male Liver mRNA rep3

description:
300195_Q20B0009_08_L1.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female Liver mRNA rep2

description:
300226_Q20B0013_02_L1.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female Liver mRNA rep4

description:
656_Liver_Q20_HET_F_L6.LB27
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female Liver mRNA rep1

description:
300248_Q20B0013_10_L3.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Female Liver mRNA rep3

description:
300036_Q80B0021_04_L1.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female Liver mRNA rep3

description:
654_Liver_Q20_HET_F_L1.LB25
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male Liver mRNA rep2

description:
644_Liver_Q20_HET_M_L4.LB19
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male Liver mRNA rep4

description:
648_Liver_Q20_HET_M_L1.LB21
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female Liver mRNA rep3

description:
300217_Q20B0013_04_L1.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male Liver mRNA rep1

description:
300246_Q20B0009_07_L3.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male Liver mRNA rep4

description:
300204_Q20B0009_02_L1.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male Liver mRNA rep1

description:
642_Liver_Q20_HET_M_L3.LB18
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male Liver mRNA rep3

description:
646_Liver_Q20_HET_M_L6.LB20
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female Liver mRNA rep2

description:
652_Liver_Q20_HET_F_L2.LB23
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female Liver mRNA rep1

description:
650_Liver_Q20_HET_F_L7.LB22
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Male Liver mRNA rep3

description:
300050_Q20B0017_08_L4.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Male Liver mRNA rep2

description:
300069_Q20B0017_06_L7.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female Liver mRNA rep4

description:
300222_Q20B0013_08_L1.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Male Liver mRNA rep4

description:
300051_Q20B0017_02_L4.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Male Liver mRNA rep1

description:
300042_Q20B0017_04_L2.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Female Liver mRNA rep4

description:
300046_Q20B0021_02_L3.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Female Liver mRNA rep3

description:
300055_Q20B0021_04_L5.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Female Liver mRNA rep2

description:
300035_Q20B0021_08_L12
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male striatum microRNA rep4

description:
28301_1_648L_striatum_Q20_HET_M_L81.V81.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: striatum


title: HET (Q20) 2 month Female Liver mRNA rep1

description:
300073_Q20B0021_10_L8.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Female Liver mRNA rep1

description:
300075_Q80B0021_06_L1.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Male Liver mRNA rep4

description:
300229_Q175B0582_10_L1.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q175) Knock-In

value: housed with Het (Q175) mice


title: HET (Q175) 10 month Female Liver mRNA rep3

description:
300219_Q175B0586_04_L1.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Female


title: HET (Q175) 10 month Male Liver mRNA rep1

description:
300238_Q175B0582_02_L1.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Male Liver mRNA rep2

description:
300213_Q175B0582_08_L1.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Female Liver mRNA rep4

description:
300218_Q175B0586_02_L1.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Female Liver mRNA rep1

description:
300207_Q175B0586_06_L1.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Female Liver mRNA rep2

description:
300206_Q175B0586_08_L1.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Male Liver mRNA rep3

description:
454_Liver_Q175_HET_M_L3.
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: 6 month


title: HET (Q175) 6 month Male Liver mRNA rep2

description:
452_Liver_Q175_HET_M_L1.LB2
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Male


title: HET (Q175) 6 month Male Liver mRNA rep1

description:
450_Liver_Q175_HET_M_L8.LB1
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Liver


title: HET (Q175) 6 month Female Liver mRNA rep4

description:
464_Liver_Q175_HET_F_L5.LB8
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Female Liver mRNA rep1

description:
458_Liver_Q175_HET_F_L6.LB5
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Female Liver mRNA rep2

description:
460_Liver_Q175_HET_F_L5.LB6
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Male Liver mRNA rep4

description:
300045_Q175B0591_04_L3.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: 2 month


title: HET (Q175) 2 month Male Liver mRNA rep1

description:
300062_Q175B0591_02_L6.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Female Liver mRNA rep3

description:
300030_Q175B0595_10_L8.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Female Liver mRNA rep2

description:
300072_Q175B0595_04_L8.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Male Liver mRNA rep2

description:
300057_Q175B0591_10_L5.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Male Liver mRNA rep3

description:
300081_Q175B0591_08_L2.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Female Liver mRNA rep1

description:
300060_Q175B0595_02_L22
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Female Liver mRNA rep4

description:
300038_Q175B0595_08_L1.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Male Liver mRNA rep4

description:
300215_Q140B0001_02_L1.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: 10 month


title: HET (Q140) 10 month Male Liver mRNA rep1

description:
300199_Q140B0001_08_L1.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Male Liver mRNA rep2

description:
300232_Q140B0001_04_L1.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Male Liver mRNA rep3

description:
300203_Q140B0001_06_L1.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Female Liver mRNA rep4

description:
300214_Q140B0005_04_L1.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Male Liver mRNA rep3

description:
300210_Q175B0582_06_L1.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Female Liver mRNA rep3

description:
300234_Q140B0005_07_L1.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Male Liver mRNA rep4

description:
456_Liver_Q175_HET_M_L7.LB4
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Female Liver mRNA rep2

description:
300243_Q140B0005_02_L2.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Female Liver mRNA rep3

description:
462_Liver_Q175_HET_F_L4.
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Male Liver mRNA rep1

description:
768_Liver_Q140_HET_M_L3.LB9
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Female Liver mRNA rep3

description:
780_Liver_Q140_HET_F_L7.LB15
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Male Liver mRNA rep4

description:
774_Liver_Q140_HET_M_L2.LB12
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Female Liver mRNA rep1

description:
300241_Q140B0005_06_L2.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Male Liver mRNA rep2

description:
770_Liver_Q140_HET_M_L2.LB10
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Male Liver mRNA rep4

description:
300067_Q140B0017_02_L7.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Male Liver mRNA rep1

description:
300032_Q140B0017_10_L8.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Female Liver mRNA rep1

description:
776_Liver_Q140_HET_F_L8.LB13
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Female Liver mRNA rep2

description:
778_Liver_Q140_HET_F_L3.LB14
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Male Liver mRNA rep3

description:
300048_Q140B0017_04_L3.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Male Liver mRNA rep2

description:
300082_Q140B0017_08_L4
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Male Liver mRNA rep3

description:
772_Liver_Q140_HET_M_L2.LB11
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Male Liver mRNA rep3

description:
300233_Q111B0009_07_L1.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q111) Knock-In

value: housed with Het (Q111) mice


title: HET (Q111) 10 month Male Liver mRNA rep4

description:
300223_Q111B0009_08_L1.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Male Liver mRNA rep2

description:
300201_Q111B0009_06_L1.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Female Liver mRNA rep3

description:
300071_Q140B0021_02_L8.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Female Liver mRNA rep1

description:
300052_Q140B0021_10_L4.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Male Liver mRNA rep1

description:
300208_Q111B0009_02_L10
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Female Liver mRNA rep3

description:
300236_Q111B0013_04_L1.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Female Liver mRNA rep4

description:
300227_Q111B0013_08_L1.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Female Liver mRNA rep1

description:
300205_Q111B0013_02_L1.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Female Liver mRNA rep2

description:
300240_Q111B0013_10_L2.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Male Liver mRNA rep3

description:
518_Liver_Q111_HET_M_L4.LB11
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Female Liver mRNA rep4

description:
300068_Q140B0021_06_L18
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Female Liver mRNA rep4

description:
782_Liver_Q140_HET_F_L5.LB16
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Male Liver mRNA rep2

description:
516_Liver_Q111_HET_M_L2.LB10
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Male Liver mRNA rep4

description:
520_Liver_Q111_HET_M_L8.LB12
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Female Liver mRNA rep1

description:
522_Liver_Q111_HET_F_L8.LB13
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Female Liver mRNA rep2

description:
524_Liver_Q111_HET_F_L4.LB14
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Male Liver mRNA rep1

description:
514_Liver_Q111_HET_M_L8.LB9
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Female Liver mRNA rep2

description:
300028_Q140B0021_04_L7.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Female Liver mRNA rep4

description:
528_Liver_Q111_HET_F_L6.LB16
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male Liver mRNA rep1

description:
300076_Q111B0017_04_L1.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male Liver mRNA rep3

description:
300027_Q111B0017_10_L7.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female Liver mRNA rep1

description:
300037_Q111B0021_06_L1.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female Liver mRNA rep2

description:
300070_Q111B0021_02_L30
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Male Liver microRNA rep4

description:
323186_Q20B0009_05_L3.LB23.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Wild Type

value: housed with Het (Q20) mice


title: WT 10 month Male Liver microRNA rep3

description:
323164_Q20B0009_01_L1.LB1.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female Liver mRNA rep4

description:
300049_Q111B0021_10_L3.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Male Liver microRNA rep2

description:
323154_Q20B0009_09_L2.LB27.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female Liver microRNA rep3

description:
323183_Q20B0013_03_L3.LB20.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female Liver mRNA rep3

description:
300047_Q111B0021_08_L3.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male Liver microRNA rep4

description:
323210_Q20B0001_07_L8.LB11.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male Liver microRNA rep3

description:
323209_Q20B0001_01_L8.LB10.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female Liver microRNA rep2

description:
323179_Q20B0013_09_L2.LB16.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Male Liver microRNA rep1

description:
323142_Q20B0009_03_L8.LB14.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male Liver microRNA rep2

description:
323206_Q20B0001_05_L8.LB7.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female Liver microRNA rep1

description:
323141_Q20B0013_05_L8.LB13.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male Liver microRNA rep1

description:
323204_Q20B0001_03_L3.LB5.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female Liver microRNA rep4

description:
323208_Q20B0005_07_L8.LB9.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male Liver mRNA rep2

description:
300078_Q111B0017_08_L1.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male Liver mRNA rep4

description:
300039_Q111B0017_06_L1.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Female Liver mRNA rep3

description:
526_Liver_Q111_HET_F_L4.LB15
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female Liver microRNA rep3

description:
323207_Q20B0005_03_L8.LB8.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female Liver microRNA rep2

description:
323205_Q20B0005_05_L3.LB6.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female Liver microRNA rep1

description:
323203_Q20B0005_09_L3.LB4.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male Liver microRNA rep4

description:
323011_Q20B0017_09_L4.LB26.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male Liver microRNA rep2

description:
322998_Q20B0017_03_L4.LB13.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male Liver microRNA rep3

description:
322999_Q20B0017_07_L4.LB14.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female Liver microRNA rep3

description:
323001_Q20B0021_05_L4.LB16.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male Liver microRNA rep1

description:
322979_Q20B0017_05_L3.LB30.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female Liver microRNA rep4

description:
323189_Q20B0013_01_L3.LB26.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female Liver microRNA rep4

description:
323006_Q20B0021_09_L4.LB21.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female Liver microRNA rep1

description:
322976_Q20B0021_07_L3.LB27.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male Liver microRNA rep4

description:
323191_Q92B0001_10_L3.LB28.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q92) Knock-In

value: housed with Het (Q92) mice


title: WT 2 month Female Liver microRNA rep2

description:
322986_Q20B0021_01_L4.LB1.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male Liver microRNA rep2

description:
323175_Q92B0001_06_L3.LB12.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female Liver microRNA rep4

description:
323194_Q92B0006_03_L3.LB31.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female Liver microRNA rep3

description:
323168_Q92B0006_01_L8.LB5.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female Liver microRNA rep2

description:
323145_Q92B0006_05_L8.LB17.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male Liver microRNA rep4

description:
839_Liver_Q92_HET_M_L7.LB8.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female Liver microRNA rep1

description:
323143_Q92B0005_05_L8.LB15.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male Liver microRNA rep2

description:
835_Liver_Q92_HET_M_L7.LB6.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female Liver microRNA rep4

description:
847_Liver_Q92_HET_F_L8.LB12.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male Liver microRNA rep1

description:
833_Liver_Q92_HET_M_L8.LB5.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female Liver microRNA rep2

description:
843_Liver_Q92_HET_F_L8.LB10.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female Liver microRNA rep3

description:
845_Liver_Q92_HET_F_L8.LB11.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male Liver microRNA rep4

description:
323025_Q92B0017_08_L5.LB4.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male Liver microRNA rep2

description:
322989_Q92B0017_04_L4.LB4.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male Liver microRNA rep3

description:
323022_Q92B0017_10_L5.LB1.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female Liver microRNA rep1

description:
841_Liver_Q92_HET_F_L8.LB9.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male Liver microRNA rep1

description:
322988_Q92B0017_06_L4.LB3.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Female Liver microRNA rep4

description:
323024_Q92B0021_10_L5.LB3.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Female Liver microRNA rep3

description:
323008_Q92B0021_04_L4.LB23.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Male Liver microRNA rep3

description:
323174_Q80B0001_08_L2.LB11.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q80) Knock-In

value: housed with Het (Q80) mice


title: HET (Q92) 2 month Female Liver microRNA rep2

description:
323003_Q92B0021_06_L4.LB18.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male Liver microRNA rep3

description:
323181_Q92B0002_05_L2.LB18.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male Liver microRNA rep1

description:
323156_Q92B0001_08_L2.LB29.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Male Liver microRNA rep2

description:
323172_Q80B0001_06_L2.LB9.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Male Liver microRNA rep1

description:
323160_Q80B0001_04_L2.LB33.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Female Liver microRNA rep1

description:
322985_Q92B0021_02_L3.LB36.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female Liver microRNA rep4

description:
323193_Q80B0005_10_L3.LB30.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female Liver microRNA rep3

description:
323188_Q80B0005_08_L3.LB25.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female Liver microRNA rep1

description:
323147_Q80B0005_02_L8.LB19.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male Liver microRNA rep3

description:
710_Liver_Q80_HET_M_L95.V95.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male Liver microRNA rep3

description:
837_Liver_Q92_HET_M_L7.LB7.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female Liver microRNA rep2

description:
323169_Q80B0005_04_L8.LB6.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female Liver microRNA rep4

description:
720_Liver_Q80_HET_F_L94.V94.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female Liver microRNA rep2

description:
716_Liver_Q80_HET_F_L3.LB30.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female Liver microRNA rep1

description:
714_Liver_Q80_HET_F_L3.LB29.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver microRNA rep5

description:
323019_Q80B0017_10_L5.LB34.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver microRNA rep4

description:
323010_Q80B0017_08_L4.LB25.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver microRNA rep3

description:
323009_Q80B0017_06_L4.LB24.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver microRNA rep2

description:
322978_Q80B0017_04_L3.LB29.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Female Liver microRNA rep3

description:
323020_Q80B0021_06_L5.LB35.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Female Liver microRNA rep2

description:
323004_Q80B0021_08_L4.LB19.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male Liver microRNA rep1

description:
322974_Q80B0021_10_L3.LB25.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male Liver microRNA rep3

description:
323190_Q20B0009_07_L3.LB27.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q20) Knock-In


title: HET (Q80) 2 month Female Liver microRNA rep1

description:
322981_Q80B0021_04_L3.LB32.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male Liver microRNA rep2

description:
323165_Q20B0009_04_L1.LB2.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male Liver microRNA rep1

description:
323140_Q20B0009_08_L8.LB12.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female Liver microRNA rep5

description:
323192_Q20B0013_10_L3.LB29.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male Liver microRNA rep2

description:
708_Liver_Q80_HET_M_L93.V93.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female Liver microRNA rep3

description:
323166_Q20B0013_08_L8.LB3.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male Liver microRNA rep3

description:
646_Liver_Q20_HET_M_L6.LB19.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female Liver microRNA rep1

description:
323149_Q20B0009_02_L8.LB21.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male Liver microRNA rep1

description:
642_Liver_Q20_HET_M_L8.LB17.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male Liver microRNA rep4

description:
648_Liver_Q20_HET_M_L7.LB20.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female Liver microRNA rep3

description:
718_Liver_Q80_HET_F_L90.V90.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female Liver microRNA rep3

description:
654_Liver_Q20_HET_F_L5.LB23.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male Liver microRNA rep1

description:
706_Liver_Q80_HET_M_L3.LB25.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male Liver microRNA rep4

description:
712_Liver_Q80_HET_M_L4.LB28.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female Liver microRNA rep4

description:
656_Liver_Q20_HET_F_L53.V53.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female Liver microRNA rep2

description:
323161_Q20B0013_04_L2.LB34.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Male Liver microRNA rep4

description:
323014_Q20B0017_06_L5.LB29.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female Liver microRNA rep1

description:
650_Liver_Q20_HET_F_L7.LB21.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female Liver microRNA rep4

description:
323170_Q20B0013_02_L2.LB7.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Male Liver microRNA rep2

description:
322995_Q20B0017_08_L4.LB10.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Female Liver microRNA rep4

description:
323018_Q20B0021_10_L5.LB33.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Male Liver microRNA rep3

description:
322996_Q20B0017_02_L5.LB11.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Female Liver microRNA rep2

description:
322991_Q20B0021_02_L4.LB6.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Female Liver microRNA rep3

description:
323000_Q20B0021_04_L4.LB15.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Female Liver microRNA rep1

description:
322980_Q20B0021_08_L3.LB31.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Male Liver microRNA rep4

description:
323182_Q175B0582_02_L3.LB19.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q175) Knock-In


title: HET (Q175) 10 month Male Liver microRNA rep2

description:
323157_Q175B0582_08_L2.LB30.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: housed with Het (Q175) mice


title: HET (Q20) 6 month Male Liver microRNA rep2

description:
644_Liver_Q20_HET_M_L8.LB18.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Female Liver microRNA rep4

description:
323163_Q175B0586_04_L2.LB36.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Female


title: HET (Q175) 10 month Male Liver microRNA rep3

description:
323173_Q175B0582_10_L2.LB10.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Female Liver microRNA rep3

description:
323162_Q175B0586_02_L2.LB35.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female Liver microRNA rep2

description:
652_Liver_Q20_HET_F_L6.LB22.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: 6 month


title: HET (Q175) 6 month Male Liver microRNA rep4

description:
456_Liver_Q175_HET_M_L2.LB4.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Male


title: HET (Q175) 10 month Female Liver microRNA rep1

description:
323151_Q175B0586_08_L8.LB23.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Liver


title: HET (Q175) 10 month Male Liver microRNA rep1

description:
323155_Q175B0582_06_L2.LB28.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Male Liver microRNA rep3

description:
454_Liver_Q175_HET_M_L1.LB3.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 10 month Female Liver microRNA rep2

description:
323152_Q175B0586_06_L6.LB24.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Female Liver microRNA rep2

description:
460_Liver_Q175_HET_F_L1.LB6.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Female Liver microRNA rep4

description:
464_Liver_Q175_HET_F_L1.LB8.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Female Liver microRNA rep1

description:
458_Liver_Q175_HET_F_L2.LB5.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Male Liver microRNA rep4

description:
323026_Q175B0591_08_L5.LB5.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: 2 month


title: HET (Q175) 2 month Female Liver microRNA rep4

description:
323017_Q175B0595_04_L5.LB32.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Male Liver microRNA rep2

description:
323002_Q175B0591_10_L4.LB17.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Male Liver microRNA rep3

description:
323007_Q175B0591_02_L4.LB22.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Male Liver microRNA rep1

description:
322987_Q20B0017_04_L4.LB2.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Female Liver microRNA rep2

description:
322983_Q175B0595_08_L3.LB34.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Female Liver microRNA rep3

description:
323005_Q175B0595_02_L4.LB20.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Male Liver microRNA rep1

description:
322990_Q175B0591_04_L4.LB5.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 2 month Female Liver microRNA rep1

description:
322975_Q175B0595_10_L3.LB26.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Male Liver microRNA rep4

description:
323176_Q140B0001_04_L2.LB13.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q140) Knock-In

value: 10 month

value: housed with Het (Q140) mice


title: HET (Q140) 10 month Male Liver microRNA rep1

description:
323144_Q140B0001_08_L8.LB16.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Male Liver microRNA rep2

description:
323148_Q140B0001_06_L8.LB20.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Female Liver microRNA rep4

description:
323187_Q140B0005_02_L3.LB24.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Male Liver microRNA rep3

description:
323159_Q140B0001_02_L2.LB32.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Female Liver microRNA rep2

description:
323178_Q140B0005_07_L2.LB15.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Male Liver microRNA rep1

description:
450_Liver_Q175_HET_M_L11.V11.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Female Liver microRNA rep3

description:
462_Liver_Q175_HET_F_L1.LB7.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Female Liver microRNA rep1

description:
323158_Q140B0005_04_L2.LB31.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Male Liver microRNA rep4

description:
774_Liver_Q140_HET_M_L20.V20.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Male Liver microRNA rep3

description:
772_Liver_Q140_HET_M_L33.V33.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Female Liver microRNA rep3

description:
780_Liver_Q140_HET_F_L7.V7.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Male Liver microRNA rep2

description:
770_Liver_Q140_HET_M_L48.V48.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Male Liver microRNA rep1

description:
768_Liver_Q140_HET_M_L21.V21.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 10 month Female Liver microRNA rep3

description:
323185_Q140B0005_06_L3.LB22.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Female Liver microRNA rep4

description:
782_Liver_Q140_HET_F_L8.LB4.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Female Liver microRNA rep1

description:
776_Liver_Q140_HET_F_L7.LB1.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Male Liver microRNA rep3

description:
323012_Q140B0017_02_L5.LB27.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Male Liver microRNA rep4

description:
323027_Q140B0017_08_L5.LB6.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q175) 6 month Male Liver microRNA rep2

description:
452_Liver_Q175_HET_M_L1.LB2.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Male Liver microRNA rep2

description:
322993_Q140B0017_04_L5.LB8.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Female Liver microRNA rep3

description:
323013_Q140B0021_06_L5.LB28.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Female Liver microRNA rep4

description:
323016_Q140B0021_02_L5.LB31.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Male Liver microRNA rep1

description:
322977_Q140B0017_10_L1.LB11.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 6 month Female Liver microRNA rep2

description:
778_Liver_Q140_HET_F_L7.LB2.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q140) 2 month Female Liver microRNA rep2

description:
322997_Q140B0021_10_L1.LB12.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Male Liver microRNA rep4

description:
323177_Q111B0009_07_L2.LB14.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q111) Knock-In

value: housed with Het (Q111) mice


title: HET (Q140) 2 month Female Liver microRNA rep1

description:
322973_Q140B0021_04_L3.LB24.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Male Liver microRNA rep2

description:
323153_Q111B0009_02_L2.LB26.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Male Liver microRNA rep3

description:
323167_Q111B0009_08_L8.LB4.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Male Liver microRNA rep1

description:
323146_Q111B0009_06_L8.LB18.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Female Liver microRNA rep4

description:
323184_Q111B0013_10_L3.LB21.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Female Liver microRNA rep3

description:
323180_Q111B0013_04_L2.LB17.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Female Liver microRNA rep2

description:
323171_Q111B0013_08_L2.LB8.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 10 month Female Liver microRNA rep1

description:
323150_Q111B0013_02_L8.LB22.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Male Liver microRNA rep2

description:
516_Liver_Q111_HET_M_L2.LB10.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male Liver microRNA rep3

description:
323021_Q111B0017_04_L5.LB36.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Female Liver microRNA rep3

description:
526_Liver_Q111_HET_F_L8.LB15.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male Liver microRNA rep4

description:
323023_Q111B0017_08_L5.LB2.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Female Liver microRNA rep2

description:
524_Liver_Q111_HET_F_L8.LB14.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Male Liver microRNA rep1

description:
514_Liver_Q111_HET_M_L2.LB9.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Female Liver microRNA rep1

description:
522_Liver_Q111_HET_F_L6.LB13.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male Liver microRNA rep1

description:
322972_Q111B0017_10_L3.LB23.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female Liver microRNA rep3

description:
322994_Q111B0021_10_L4.LB9.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female Liver microRNA rep1

description:
322982_Q111B0021_06_L3.LB33.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female Liver microRNA rep2

description:
322992_Q111B0021_08_L4.LB7.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Female Liver microRNA rep4

description:
323015_Q111B0021_02_L5.LB30.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Male cortex mRNA rep1

description:
300147_Q20B0009_09_L7.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

source_name: cortex

value: cortex

value: Wild Type

value: housed with Het (Q20) mice


title: WT 10 month Male cortex mRNA rep2

description:
300187_Q20B0009_01_L7.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female cortex mRNA rep4

description:
300164_Q20B0013_09_L2.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female cortex mRNA rep2

description:
300190_Q20B0013_03_L8.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Male cortex mRNA rep4

description:
300194_Q20B0009_03_L8.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Male Liver microRNA rep4

description:
520_Liver_Q111_HET_M_L2.LB12.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male cortex mRNA rep1

description:
300251_Q20B0001_03_L4.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male cortex mRNA rep2

description:
300254_Q20B0001_05_L5.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female cortex mRNA rep4

description:
300257_Q20B0005_09_L5.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Female Liver microRNA rep4

description:
528_Liver_Q111_HET_F_L8.LB16.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male cortex mRNA rep3

description:
300256_Q20B0001_01_L5.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 2 month Male Liver microRNA rep2

description:
322984_Q111B0017_06_L3.LB35.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female cortex mRNA rep3

description:
300255_Q20B0005_05_L5.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Female cortex mRNA rep2

description:
300253_Q20B0005_03_L4.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q111) 6 month Male Liver microRNA rep3

description:
518_Liver_Q111_HET_M_L2.LB11.clipped
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Male cortex mRNA rep3

description:
300154_Q20B0009_05_L8.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male cortex mRNA rep2

description:
300021_Q20B0017_09_L6.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female cortex mRNA rep2

description:
300001_Q20B0021_09_L2.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male cortex mRNA rep3

description:
299994_Q20B0017_07_L8.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female cortex mRNA rep3

description:
299993_Q20B0021_07_L8.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male cortex mRNA rep1

description:
300005_Q20B0017_05_L3.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Male cortex mRNA rep4

description:
299984_Q20B0017_03_L6.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female cortex mRNA rep1

description:
300191_Q20B0013_05_L8.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 6 month Male cortex mRNA rep4

description:
300258_Q20B0001_07_L5.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 10 month Female cortex mRNA rep3

description:
300159_Q20B0013_01_L1.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male cortex mRNA rep2

description:
300149_Q92B0001_06_L33
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q92) Knock-In

value: housed with Het (Q92) mice


title: WT 6 month Female cortex mRNA rep1

description:
300252_Q20B0005_07_L32
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female cortex mRNA rep4

description:
300144_Q92B0006_05_L6.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male cortex mRNA rep1

description:
300156_Q92B0001_10_L1.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female cortex mRNA rep4

description:
299983_Q20B0021_01_L6.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male cortex mRNA rep3

description:
300189_Q92B0002_05_L7.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female cortex mRNA rep3

description:
300173_Q92B0005_05_L4.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female cortex mRNA rep2

description:
300150_Q92B0006_01_L8.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Female cortex mRNA rep1

description:
300142_Q92B0006_03_L6.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male cortex mRNA rep1

description:
35475_1_833L_cortex_Q92_HET_M_L2.LB18
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male cortex mRNA rep4

description:
35553_1_839L_cortex_Q92_HET_M_L3.LB21
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female cortex mRNA rep4

description:
35657_1_847L_cortex_Q92_HET_F_L2.
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male cortex mRNA rep3

description:
35527_1_837L_cortex_Q92_HET_M_L7.LB20
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female cortex mRNA rep3

description:
35631_1_845L_cortex_Q92_HET_F_L1.
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Male cortex mRNA rep2

description:
35501_1_835L_cortex_Q92_HET_M_L4.LB19
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female cortex mRNA rep2

description:
35605_1_843L_cortex_Q92_HET_F_L3.LB23
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male cortex mRNA rep4

description:
299981_Q92B0017_08_L6.D707
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 6 month Female cortex mRNA rep1

description:
35579_1_841L_cortex_Q92_HET_F_L1.LB22
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: WT 2 month Female cortex mRNA rep1

description:
300026_Q20B0021_05_L7.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 10 month Male cortex mRNA rep4

description:
300186_Q92B0001_08_L7.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: SA24

city: Zibo

first: chunxiao

last: meng

state: Shandong

address: No. 266 Xincun West Road, Zhangdian District

country: China

institute: Shandong University of Technology

description:
SRX1136559
SAMN03965494

data_processing: The clean reads of Paired-end sequencing of cDNA were filtered from raw data then assembled into contiguous sequences (contigs) by Trinity software (version 2013-02-25). These contigs were used for gene prediction by GetORF (EMBOSS http://emboss.open-bio.org/). Similar protein-encoding genes were selected and subsequently blasted with the references of protein-encoding sequence from the NR of GenBank, Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Kyoto Orthology Genome (KOG) identifiers using Blastp. The matching annotated coding sequences were analysed for GO classification (http://www.geneontology.org/), pathway construction, expression abundance and difference analysis using GoPipe (E-value < 10-5).

organism: Haematococcus lacustris

source_name: algal cells_SA

extract_protocol:
extract protocol
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: cell type

value: algal cells

tag: treated with

value: 25 mg/L of SA for 24h


title: HET (Q92) 2 month Male cortex mRNA rep2

description:
299988_Q92B0017_06_L7.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Male cortex mRNA rep1

description:
300024_Q92B0017_04_L6.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: SA6

description:
SRX1136558
SAMN03965493

value: 25 mg/L of SA for 6h


title: JA6

description:
SRX1136555
SAMN03965490

source_name: algal cells_JA

value: 25 mg/L of JA for 6h


title: N

description:
SRX1136390
SAMN03965488

source_name: algal cells_untreated

value: none (normal control)


title: HET (Q92) 2 month Female cortex mRNA rep4

description:
299980_Q92B0021_10_L24
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Female


title: HET (Q92) 2 month Male cortex mRNA rep3

description:
299979_Q92B0017_10_L5.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: 2 month

value: Male


title: HET (Q92) 2 month Female cortex mRNA rep3

description:
299987_Q92B0021_06_L7.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Female cortex mRNA rep1

description:
299990_Q92B0021_04_L8.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q92) 2 month Female cortex mRNA rep2

description:
299995_Q92B0021_02_L1.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Male cortex mRNA rep3

description:
300157_Q80B0001_03_L1.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q80) Knock-In

value: 10 month

value: housed with Het (Q80) mice


title: JA24

description:
SRX1136556
SAMN03965491

value: 25 mg/L of JA for 24h


title: SA1

description:
SRX1136557
SAMN03965492

value: 25 mg/L of SA for 1h


title: JA1

description:
SRX1136554
SAMN03965489

value: 25 mg/L of JA for 1h


title: HET (Q80) 10 month Male cortex mRNA rep4

description:
300155_Q80B0001_04_L1.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: cortex


title: HET (Q80) 10 month Male cortex mRNA rep1

description:
300170_Q80B0001_08_L4.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female cortex mRNA rep3

description:
300168_Q80B0005_04_L3.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male cortex mRNA rep4

description:
30727_1_712L_cortex_Q80_HET_M_L2.LB4
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: 6 month


title: HET (Q80) 10 month Female cortex mRNA rep2

description:
300176_Q80B0005_10_L5.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female cortex mRNA rep1

description:
300180_Q80B0005_02_L6.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 10 month Female cortex mRNA rep4

description:
300146_Q80B0005_08_L7.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male cortex mRNA rep3

description:
30701_1_710L_cortex_Q80_HET_M_L7.LB3
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male cortex mRNA rep2

description:
30675_1_708L_cortex_Q80_HET_M_L1.LB2
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female cortex mRNA rep3

description:
30805_1_718L_cortex_Q80_HET_F_L5.LB7
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female cortex mRNA rep4

description:
30831_1_720L_cortex_Q80_HET_F_L7.LB8
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female cortex mRNA rep1

description:
30753_1_714L_cortex_Q80_HET_F_L2.LB5
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Female cortex mRNA rep2

description:
30779_1_716L_cortex_Q80_HET_F_L8.LB6
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 6 month Male cortex mRNA rep1

description:
30649_1_706L_cortex_Q80_HET_M_L7.LB1
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male cortex mRNA rep5

description:
299991_Q80B0017_06_L8.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male cortex mRNA rep3

description:
299986_Q80B0017_10_L21
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male cortex mRNA rep2

description:
299998_Q80B0017_04_L1.D712
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male cortex mRNA rep4

description:
300023_Q80B0017_08_L6.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Male cortex mRNA rep1

description:
299971_Q80B0021_10_L4.D709
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Female cortex mRNA rep3

description:
300004_Q80B0021_08_L2.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Female cortex mRNA rep2

description:
300020_Q80B0021_04_L6.D711
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male cortex mRNA rep3

description:
300158_Q20B0009_04_L1.D706
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000

value: Het (Q20) Knock-In

value: housed with Het (Q20) mice


title: HET (Q80) 10 month Male cortex mRNA rep2

description:
300193_Q80B0001_06_L8.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male cortex mRNA rep1

description:
300179_Q20B0009_02_L5.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male cortex mRNA rep2

description:
300177_Q20B0009_08_L5.D701
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q80) 2 month Female cortex mRNA rep1

description:
299972_Q80B0021_06_L4.D710
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Male cortex mRNA rep4

description:
300192_Q20B0009_07_L8.D704
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male cortex mRNA rep4

description:
28295_1_648L_cortex_Q20_HET_M_L8.LB21
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female cortex mRNA rep4

description:
300166_Q20B0013_02_L3.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female cortex mRNA rep2

description:
300145_Q20B0013_04_L7.D705
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female cortex mRNA rep3

description:
300148_Q20B0013_08_L7.D708
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male cortex mRNA rep3

description:
28269_1_646L_cortex_Q20_HET_M_L2.LB20
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 10 month Female cortex mRNA rep1

description:
300143_Q20B0013_10_L6.D703
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male cortex mRNA rep1

description:
28217_1_642L_cortex_Q20_HET_M_L2.LB18
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Male cortex mRNA rep2

description:
28243_1_644L_cortex_Q20_HET_M_L4.
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female cortex mRNA rep4

description:
28399_1_656L_cortex_Q20_HET_F_L1.LB27
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: X4p53.NSC518.Rep2

city: San Francisco

first: Bjoern

last: Schwer

state: CA

institute: University of California, San Francisco

description: GRO-seq

data_processing:
HTGTS Miseq reads were de-multiplexed and adapter sequence trimmed using the fastq-multx tool from ea-utils (http://code.google.com/p/eautils/) and the SeqPrep utility (https://github.com/jstjohn/SeqPrep) respectively.
HTGTS reads were mapped to the mm9 reference genome using Bowtie2 (http://bowtiebio.sourceforge.net/bowtie2/manual.shtml) with the top fifty alignments reported that had an alignment score above 50, representing a perfect 25nt local alignment.
We used a best-path searching algorithm to select the optimal sequence of alignments that describe the read’s composition. Aligned reads were filtered on the following conditions: (1) reads must include both a bait alignment and a prey alignment and (2) the bait alignment cannot extend more than 10 nucleotides beyond the targeted site.
We compared discarded alignments to the selected prey alignment; if any of the discarded alignments surpassed both a coverage and score threshold with respect to the prey alignment, the read was filtered due to low mapping quality.
To remove possible mispriming events and other artifacts, the bait alignment must extend 10 nucleotides past the primer.
We removed potential duplicates by comparing the coordinates of the end of the bait alignment and the start of the prey alignment across all reads. A read will be marked as a duplicate if it has a bait alignment offset within 2nt and a prey alignment offset within 2nt of another read’s bait and prey alignments.
Post-filter stringency was applied to remove background-prone junctions with gaps larger than 30 nt and bait sequences shorter than 50 nt.  Junctions in regions with repetitive sequence and telomeric sequences were filtered out.
GRO-Seq data sets were aligned using Bowtie software to mouse genome build mm9/NCBI37. We used Homer software to de novo identify transcripts from both strands of the genome in the context of the GRO-Seq data.
Genome_build: mm9
Supplementary_files_format_and_content: HTGTS: tab delimited text files (translocation junctions) contain filtered unique junctions and include the following information: sequence ID (Qname); prey chromosome (Rname), prey junction coordinate (Junction), chromosome orientation of prey junction (Strand), beginning (Rstart) and end (Rend) nucleotide position of prey junction aligning to the genome build; bait chromosome (B_Rname); beginning (B_Rstart) and end (B_Rend) nucleotide position of the bait junction; chromosome orientation of the bait junction (B_Strand); position on the read where the bait sequence begins (B_Qstart) and ends (B_Qend); position on the read where the prey junction begins (Qstart) and ends (Qend); the length of the combined and stitched paried end read (Qlen); the entire stitched paired end read sequence (Seq); the sequence in the + orientation at the junction (J_seq); and the experiment associated with the read (note).
Supplementary_files_format_and_content: GRO-seq: bigWig

source_name: Neural stem/progenitor cells

growth_protocol: NSPCs were isolated and cultured as described in Wei et al.

extract_protocol:
HTGTS: DNA was extracted overnight at 55 degC in a lysis buffer containing: 200mM NaCl, 0.4% SDS, 100mM Tris-HCl pH7.5, 5mM EDTA pH 8.0, 0.2 mg/mL proteinase K, prior to DNA fragmentation
GRO-seq: BrU-labeled nascent transcripts were extracted with TriPure reagent and affinity-purified with anti-BrU antibody-conjugated agarose beads.  Affinity-purified nascent RNA transcripts were fragmented with NaOH, RNA was decapped with Tobacco Acid Pyrophosphatase and end-repaired with T4 polynucleotide kinase.
HTGTS: LAM-PCR-mediated HTGTS (Frock et al., 2015; see manuscript for details)
GRO-seq: Illumina adapters were ligated to RNA with T4 RNA ligase and cDNA was generated with reverse transcriptase.  Libraries were PCR-amplified with Illumina primers and sequenced (Illumina Hiseq2000 or HiSeq2500 platform).

treatment_protocol: See details in Wei et al.; treatment of samples is indicated in "characteristics: treatment" column

tag: bait dsb

tag: treatment

value: untreated


title: X4p53.NSC531.Rep3

description: GRO-seq


title: ATMKO.NSC505.Rep3

description: GRO-seq

value: ATM-/- GR-I-SceI 25xI-SceI-c-Myc

value: TA


title: X4p53.NSC185.Rep1

description: GRO-seq


title: HET (Q20) 6 month Female cortex mRNA rep2

description:
28347_1_652L_cortex_Q20_HET_F_L1.LB23
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 2 month Male cortex mRNA rep4

description:
299976_Q20B0017_08_L5.D702
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: HET (Q20) 6 month Female cortex mRNA rep1

description:
28321_1_650L_cortex_Q20_HET_F_L3.LB22
Sequencing may have been performed on either of the following Illumina instruments: HiSeq 2500 or HiSeq 2000


title: ATMKO.NSC496.Rep2

description: GRO-seq