title: E18 Cell 76

description:
E18_C76
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 70

status: Public on May 22 2019

type: SRA

city: St. Louis

first: Brian

middle: Stewart

last: Clark

state: Missouri

address: 660 S Euclid Ave; Campus Box #8096

department: Ophthalmology and Visual Sciences

country: USA

institute: Washington University

description:
E18_C70
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv

library_source: transcriptomic

data_processing:
Smart-seq: Fastq files were aligned to mm10 using Hisat and processed to bam files using samtools; mapped reads were assigned using Cuffquant and libraries normalized using Cuffnorm.
10x: Demux and generation of fastq files using default parameters from Cellranger v1.2.1 mkfastq; Alignment of .fastq files using Cellranger v1.2.1 count with refdata-cellranger-mm10 v1.2.0 as a reference index; count matrices were manually aggregated and used as input to Monocle2 single cell RNAseq framework.
Genome_build: Smart-seq: mm10 (GRCm38)
Genome_build: 10x: mm10 (refdata-cellranger-mm10 v1.2.0)
Supplementary_files_format_and_content: SmartSeq_aggregate.mtx: Expression Data of aggregate Smart-Seq cells.
Supplementary_files_format_and_content: SmartSeq_genes.tsv: Gene features of aggregate Smart-Seq cells.
Supplementary_files_format_and_content: SmartSeq_cells.tsv: Cell Features of aggregate Smart-Seq cells.
Supplementary_files_format_and_content: 10x_aggregate.mtx: Expression Data of aggregate 10x Samples.
Supplementary_files_format_and_content: genes.tsv: Gene features of aggregate 10x Samples.
Supplementary_files_format_and_content: barcodes.tsv: Cell Features of aggregate 10x Samples.

molecule: total RNA

organism: Mus musculus

source_name: Sorted Retinal Progenitor Cell (Chx10-GFP positive)

extract_protocol: Adapted Smart-seq2 protocol or 10x Genomics Chromium single cell system with v2 Chemistry.

treatment_protocol: None - wildtype animals.

tag: cell type

value: Retinal progenitor cell

tag: age

tag: strain/background

tag: genotype/variation

value: Wildtype


title: E18 Cell 79

description:
E18_C79
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 71

description:
E18_C71
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 73

description:
E18_C73
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 95

description:
E18_C95
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 69

description:
E18_C69
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 72

description:
E18_C72
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 68

description:
E18_C68
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 77

description:
E18_C77
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 74

description:
E18_C74
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 75

description:
E18_C75
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 64

description:
E18_C64
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 62

description:
E18_C62
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 61

description:
E18_C61
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 60

description:
E18_C60
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 63

description:
E18_C63
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 67

description:
E18_C67
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 65

description:
E18_C65
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 83

description:
E18_C83
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 66

description:
E18_C66
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 59

description:
E18_C59
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 57

description:
E18_C57
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 55

description:
E18_C55
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 56

description:
E18_C56
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 54

description:
E18_C54
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 53

description:
E18_C53
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 50

description:
E18_C50
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 51

description:
E18_C51
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 43

description:
E18_C43
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 45

description:
E18_C45
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 48

description:
E18_C48
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 42

description:
E18_C42
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 47

description:
E18_C47
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 49

description:
E18_C49
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 37

description:
E18_C37
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 46

description:
E18_C46
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 41

description:
E18_C41
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 58

description:
E18_C58
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 44

description:
E18_C44
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 208

description:
E18_C208
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 36

description:
E18_C36
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 40

description:
E18_C40
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 38

description:
E18_C38
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 32

description:
E18_C32
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 35

description:
E18_C35
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 33

description:
E18_C33
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 52

description:
E18_C52
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 39

description:
E18_C39
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 31

description:
E18_C31
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 34

description:
E18_C34
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 29

description:
E18_C29
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 28

description:
E18_C28
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 27

description:
E18_C27
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 26

description:
E18_C26
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 25

description:
E18_C25
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 23

description:
E18_C23
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 24

description:
E18_C24
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 139

description:
E18_C139
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 22

description:
E18_C22
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 21

description:
E18_C21
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 30

description:
E18_C30
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 12

description:
E18_C12
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 9

description:
E18_C09
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 7

description:
E18_C07
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 14

description:
E18_C14
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 16

description:
E18_C16
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 10

description:
E18_C10
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 6

description:
E18_C06
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 8

description:
E18_C08
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 15

description:
E18_C15
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 5

description:
E18_C05
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 17

description:
E18_C17
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 11

description:
E18_C11
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 20

description:
E18_C20
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 19

description:
E18_C19
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 18

description:
E18_C18
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 13

description:
E18_C13
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 284

description:
E14_C284
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 285

description:
E14_C285
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 283

description:
E14_C283
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 286

description:
E14_C286
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 282

description:
E14_C282
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 3

description:
E18_C03
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 2

description:
E18_C02
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 4

description:
E18_C04
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 288

description:
E14_C288
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 281

description:
E14_C281
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E18 Cell 1

description:
E18_C01
Smart-Seq2 Single cell RNAseq
E18 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 280

description:
E14_C280
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 287

description:
E14_C287
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 279

description:
E14_C279
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 278

description:
E14_C278
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 276

description:
E14_C276
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 275

description:
E14_C275
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 273

description:
E14_C273
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 274

description:
E14_C274
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 272

description:
E14_C272
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 271

description:
E14_C271
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 269

description:
E14_C269
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 270

description:
E14_C270
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 277

description:
E14_C277
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 263

description:
E14_C263
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 264

description:
E14_C264
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 265

description:
E14_C265
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 266

description:
E14_C266
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 260

description:
E14_C260
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 261

description:
E14_C261
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 259

description:
E14_C259
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 258

description:
E14_C258
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 256

description:
E14_C256
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 257

description:
E14_C257
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 255

description:
E14_C255
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 251

description:
E14_C251
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 254

description:
E14_C254
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 253

description:
E14_C253
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 252

description:
E14_C252
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 268

description:
E14_C268
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 249

description:
E14_C249
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 250

description:
E14_C250
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 248

description:
E14_C248
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 267

description:
E14_C267
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 247

description:
E14_C247
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 245

description:
E14_C245
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 243

description:
E14_C243
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 246

description:
E14_C246
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 262

description:
E14_C262
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 240

description:
E14_C240
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 237

description:
E14_C237
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 239

description:
E14_C239
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 244

description:
E14_C244
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 236

description:
E14_C236
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 234

description:
E14_C234
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 235

description:
E14_C235
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 233

description:
E14_C233
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 227

description:
E14_C227
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 231

description:
E14_C231
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 229

description:
E14_C229
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 232

description:
E14_C232
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 226

description:
E14_C226
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 230

description:
E14_C230
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 225

description:
E14_C225
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 228

description:
E14_C228
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 224

description:
E14_C224
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 223

description:
E14_C223
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 221

description:
E14_C221
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 222

description:
E14_C222
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 238

description:
E14_C238
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 242

description:
E14_C242
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 241

description:
E14_C241
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 220

description:
E14_C220
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 219

description:
E14_C219
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 216

description:
E14_C216
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 213

description:
E14_C213
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 218

description:
E14_C218
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 214

description:
E14_C214
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 217

description:
E14_C217
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 211

description:
E14_C211
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 215

description:
E14_C215
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 212

description:
E14_C212
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 210

description:
E14_C210
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 209

description:
E14_C209
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 207

description:
E14_C207
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 208

description:
E14_C208
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 198

description:
E14_C198
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 201

description:
E14_C201
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 199

description:
E14_C199
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 203

description:
E14_C203
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 205

description:
E14_C205
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 200

description:
E14_C200
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 197

description:
E14_C197
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 196

description:
E14_C196
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 195

description:
E14_C195
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 194

description:
E14_C194
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 193

description:
E14_C193
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 191

description:
E14_C191
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 192

description:
E14_C192
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 189

description:
E14_C189
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 187

description:
E14_C187
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 188

description:
E14_C188
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 183

description:
E14_C183
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 180

description:
E14_C180
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 184

description:
E14_C184
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 186

description:
E14_C186
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 206

description:
E14_C206
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 185

description:
E14_C185
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 177

description:
E14_C177
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 181

description:
E14_C181
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 182

description:
E14_C182
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 202

description:
E14_C202
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 171

description:
E14_C171
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 176

description:
E14_C176
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 173

description:
E14_C173
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 179

description:
E14_C179
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 174

description:
E14_C174
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 175

description:
E14_C175
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 170

description:
E14_C170
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 204

description:
E14_C204
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 169

description:
E14_C169
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 190

description:
E14_C190
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 168

description:
E14_C168
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 167

description:
E14_C167
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 178

description:
E14_C178
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 166

description:
E14_C166
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 163

description:
E14_C163
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 164

description:
E14_C164
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 165

description:
E14_C165
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 159

description:
E14_C159
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 158

description:
E14_C158
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 161

description:
E14_C161
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 157

description:
E14_C157
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 155

description:
E14_C155
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 156

description:
E14_C156
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 153

description:
E14_C153
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 172

description:
E14_C172
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 152

description:
E14_C152
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 151

description:
E14_C151
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 150

description:
E14_C150
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 143

description:
E14_C143
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 144

description:
E14_C144
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 146

description:
E14_C146
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 147

description:
E14_C147
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 145

description:
E14_C145
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 149

description:
E14_C149
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 148

description:
E14_C148
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 140

description:
E14_C140
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 139

description:
E14_C139
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 142

description:
E14_C142
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 141

description:
E14_C141
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 136

description:
E14_C136
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 135

description:
E14_C135
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 160

description:
E14_C160
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 134

description:
E14_C134
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 162

description:
E14_C162
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 154

description:
E14_C154
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 132

description:
E14_C132
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 138

description:
E14_C138
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 131

description:
E14_C131
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 137

description:
E14_C137
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 130

description:
E14_C130
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 129

description:
E14_C129
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 128

description:
E14_C128
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 133

description:
E14_C133
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 125

description:
E14_C125
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 126

description:
E14_C126
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 123

description:
E14_C123
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 122

description:
E14_C122
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 121

description:
E14_C121
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 124

description:
E14_C124
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 118

description:
E14_C118
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 117

description:
E14_C117
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 120

description:
E14_C120
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 119

description:
E14_C119
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 115

description:
E14_C115
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 113

description:
E14_C113
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 116

description:
E14_C116
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 114

description:
E14_C114
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 111

description:
E14_C111
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 112

description:
E14_C112
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 108

description:
E14_C108
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 110

description:
E14_C110
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 109

description:
E14_C109
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 104

description:
E14_C104
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 127

description:
E14_C127
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 103

description:
E14_C103
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 102

description:
E14_C102
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 106

description:
E14_C106
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 107

description:
E14_C107
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 100

description:
E14_C100
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 99

description:
E14_C99
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 97

description:
E14_C97
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 96

description:
E14_C96
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 93

description:
E14_C93
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 92

description:
E14_C92
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 94

description:
E14_C94
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 95

description:
E14_C95
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 90

description:
E14_C90
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 91

description:
E14_C91
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 88

description:
E14_C88
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 87

description:
E14_C87
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 86

description:
E14_C86
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 82

description:
E14_C82
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 83

description:
E14_C83
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 105

description:
E14_C105
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 101

description:
E14_C101
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 84

description:
E14_C84
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 76

description:
E14_C76
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 78

description:
E14_C78
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 85

description:
E14_C85
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 77

description:
E14_C77
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 81

description:
E14_C81
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 98

description:
E14_C98
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 79

description:
E14_C79
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 75

description:
E14_C75
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 73

description:
E14_C73
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 72

description:
E14_C72
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 74

description:
E14_C74
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 80

description:
E14_C80
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 71

description:
E14_C71
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 89

description:
E14_C89
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 68

description:
E14_C68
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 69

description:
E14_C69
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 66

description:
E14_C66
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 70

description:
E14_C70
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 67

description:
E14_C67
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 63

description:
E14_C63
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 64

description:
E14_C64
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 65

description:
E14_C65
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 61

description:
E14_C61
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 62

description:
E14_C62
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 60

description:
E14_C60
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 59

description:
E14_C59
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 57

description:
E14_C57
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 55

description:
E14_C55
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 58

description:
E14_C58
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 53

description:
E14_C53
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 49

description:
E14_C49
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 51

description:
E14_C51
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 52

description:
E14_C52
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 46

description:
E14_C46
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 45

description:
E14_C45
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 50

description:
E14_C50
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 44

description:
E14_C44
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 48

description:
E14_C48
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 43

description:
E14_C43
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 42

description:
E14_C42
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 41

description:
E14_C41
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 40

description:
E14_C40
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 39

description:
E14_C39
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 38

description:
E14_C38
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 37

description:
E14_C37
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 36

description:
E14_C36
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 35

description:
E14_C35
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 34

description:
E14_C34
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 56

description:
E14_C56
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 33

description:
E14_C33
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 54

description:
E14_C54
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 30

description:
E14_C30
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 28

description:
E14_C28
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 32

description:
E14_C32
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 29

description:
E14_C29
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 26

description:
E14_C26
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 27

description:
E14_C27
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 25

description:
E14_C25
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 24

description:
E14_C24
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 23

description:
E14_C23
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 17

description:
E14_C17
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 21

description:
E14_C21
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 20

description:
E14_C20
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 18

description:
E14_C18
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 22

description:
E14_C22
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 16

description:
E14_C16
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 19

description:
E14_C19
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 15

description:
E14_C15
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 13

description:
E14_C13
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 14

description:
E14_C14
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 12

description:
E14_C12
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 11

description:
E14_C11
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 8

description:
E14_C08
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 9

description:
E14_C09
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 31

description:
E14_C31
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 6

description:
E14_C06
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 7

description:
E14_C07
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 5

description:
E14_C05
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 3

description:
E14_C03
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 1

description:
E14_C01
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 4

description:
E14_C04
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E14 Cell 2

description:
E14_C02
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: P14

description:
P14
10x Genomics single cell RNAseq
P14 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv

source_name: Retinal Cells

value: Retinal cell


title: P8_rep2

description:
P8_rep2
10x Genomics single cell RNAseq
P8 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: P5

description:
P5
10x Genomics single cell RNAseq
P5 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: P2_rep2

description:
P2_rep2
10x Genomics single cell RNAseq
P2 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: E18_rep3

description:
10x_E18_rep3
10x Genomics single cell RNAseq
E18 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: P0

description:
P0
10x Genomics single cell RNAseq
P0 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: E18_rep2

description:
10x_E18_rep2
10x Genomics single cell RNAseq
E18 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: P2_rep3

description:
P2_rep3
10x Genomics single cell RNAseq
P2 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: E14_rep1

description:
10x_E14_rep1
10x Genomics single cell RNAseq
E14 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: E14_rep2

description:
10x_E14_rep2
10x Genomics single cell RNAseq
E14 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: E12

description:
10x_E12
10x Genomics single cell RNAseq
E12 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: E14 Cell 10

description:
E14_C10
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: E16

description:
10x_E16
10x Genomics single cell RNAseq
E16 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: E11

description:
10x_E11
10x Genomics single cell RNAseq
E11 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: Input_Flag-KDM4B

city: Los Angeles

first: Cunyu

last: Wang

state: CA

address: 10833 Le Conte Ave

department: School of Dentistry

institute: university of California, Los Angeles

library_source: genomic

data_processing:
ChIP-seq reads were aligned to the mm9 genome assembly using Bowtie
peaks were called using algorithm described previously (Ferrari R et al.,  Genome Res. 2012:1212-21)   with the following setting
Genome_build: mm9

molecule: genomic DNA

source_name: adipocyte, Flag-KDM4B retrovirus

growth_protocol: preadiocytes were isolated from Kdm4b KO mice, infected with control or Flag-KDM4B retrovirus and maintained with adipogenesis medium for 7 to 10 days

extract_protocol:
Lysates were clarified from sonicated nuclei and KDM4B-DNA complexes were isolated with Flag antibody.
libaray was prepared according to KAPA Hyper prep kit

tag: tissue

value: adipocyte

tag: chip antibody


title: Control

source_name: adipocyte, control retrovirus

value: anti-Flag (M2, Sigma)


title: Input_Control


title: hLiverOrganoids-wt-histoneChipmentation-hLiverOrganoids-wt-donor19-H3K4me3

city: Hinxton

first: Rik

last: Lindeboom

address: Wellcome Trust Genome Campus

department: Cellular Genetics

country: United Kingdom

institute: Wellcome Sanger Institute

description:
ChIPmentation on H3K4me3 of human liver organoids
readCountsInAtacPeaks_rlog2TransVarianceStabilized.txt

data_processing:
For RNA-seq, paired end reads were aligned to the transcriptome using bwa. Paired end reads obtained by CEL-seq were aligned to the transcriptome using bwa (version 0.6.2-r126) with default parameters. The transcriptome contained all RefSeq gene models based on the mouse genome release mm10 downloaded from the UCSC genome browser and contained 31,109 isoforms derived from 23,480 gene loci. All isoforms of the same gene were merged to a single gene locus. The right mate of each read pair was mapped to the ensemble of all gene loci and to the set of 92 ERCC spike-ins in sense direction. Reads mapping to multiple loci were discarded. The left read contains the barcode information: the first eight bases correspond to the cell specific barcode followed by 8 bases representing the unique molecular identifier. The remainder of the left read contains a polyT stretch followed by few (<15 transcript derived bases). The left read was not used for quantification. For each cell barcode we counted the number of unique molecular identifiers for every transcript and aggregated this number across all transcripts derived from the same gene locus. Based on binomial statistics we converted the number of observed unique molecular identifiers into transcript counts.
ATAC data: Paired-end 50 bp sequencing reads were aligned to mm9 with BWA (Li & Durbin, 2009) allowing one mismatch. Reads were filtered for a quality score of at least 1, PCR duplicates were removed with Picard and reads mapping to the mitochondrial chromosome were discarded. Peaks were identified with MACS 2.0 (Zhang et al, 2008) with a false discovery rate of 0.01.
ChIPmentation: Paired-end 50 bp sequencing reads were aligned to mm9 with BWA (Li & Durbin, 2009) allowing one mismatch. Reads were filtered for a quality score of at least 1, PCR duplicates were removed.
Genome_build: mm10 for RNA-seq, mm9 for ATAC-seq and ChIPmentation
Supplementary_files_format_and_content: coutb files contain UMI barcode normalised abundance counts of RNA-seq experiments. Normalized and noise-stabilized read count table contains read counts of all ATAC-seq and ChIPmentation samples under a union of all identified peaks in the ATAC-seq samples, after normalization and variance stabilization (2^rlogTransformation() function in DESeq2) of the counts.

organism: Homo sapiens

source_name: WT human organoids

extract_protocol:
RNA was purified with Trizol extraction. For sequencing, 3 ng of RNA/sample was used. For ATAC-seq, organoids were resuspended in Recovery Cell Culture Freezing Medium (Gibco) and snap frozen prior to the ATAC-seq procedure. Once thawed, they were washed with PBS and processed for ATAC-seq. For ChIPmentation, cell pellets were dissolved in PBS and crosslinked in solution by using formaldehyde (1% final volume, shaking 10 minutes at room temperature). Glycine (0.125 M) was added to quench the reaction. Cell pellets were lysed in a volume of 110 μL using lysis buffer (20mM Hepes pH 7.6, 1% SDS, 1x Protease Inhibitor Cocktails. Samples were sonicated using the Biorupter Pico (Diagenode) with 6 cycles (30 sec on / 30 sec off). Afterwards the samples were spun at 16.200×G for 5 min at room temperature and stored at -80°C prior to the ChIPmentation procedure.
RNA-seq libraries were prepared using an adapted version for bulk samples of the CEL-seq2 technique. RNA-seq libraries were sequenced on an Illumina NextSeq500 using 75bp paired end sequencing. For ChIPmentation the chromatin was incubated overnight at 4°C rotating in dilution buffer (1% Triton X-100, 1.2mM EDTA, 16.7mM Tris pH8, 167mM NaCl), 1x Protease Inhibitor Cocktail (Roche), and 1 μL of antibody (H3K4me3 / H3K27ac / H3K27me3, Diagenode). Per ChIP 10 μL protein A Dynabeads and 10 μL protein G Dynabeads were used. Beads were washed using dilution buffer (+0.15% SDS, +0.1% BSA) and incubated with the chromatin and antibody mix for 60 minutes at 4°C rotating. Afterwards the beads were washed at 4°C once with ChIP wash buffer 1 (2mM EDTA, 20mM Tris pH 8, 1% Triton X-100, 0.1% SDS, 150 mM NaCl), twice with ChIP wash buffer 2 (2mM EDTA, 20mM Tris pH8, 1% Triton X-100, 0.1% SDS, 500 mM NaCl), and twice with TE (1 mM EDTA, 10 mM Tris pH 8). Beads were resuspended in Tagment DNA buffer and 1 μL Tn5 enzyme (produced in-house) and incubated for 10 minutes at 37°C with 550 rpm shaking. Afterwards the beads were washed twice with WBI (20 mM Hepes, 150 mM NaCl, 0.1% SDS, 0.1% DOC, 1% Triton X-100, 1 mM EDTA, 0.5mM EGTA) and twice with WBIV (20mM Hepes, 1mM EDTA, 0.5mM EGTA) with 5 minutes rotating at room temperature in between. Samples were decrosslinked for 1h at 55°C 1000 rpm shaking followed by an overnight incubation at 65°C using elution buffer (0.5% SDS, 300 mM NaCl, 5 mM EDTA, 10 mM Tris pH8) and proteinase K. Samples were incubated one additional hour the next day with elution buffer and proteinase K for 1 hour at 55°C. The samples were purified using 2x SPRI AMPureXP beads. qPCR was used to determine the sufficient amount of PCR cycles needed to amplify the library. The libraries were amplified using the KAPA HiFi Hotstart Ready Mix (KAPA Biosystems) and Nextera Index Kit 1 (i7) and 2 (i5) primers (Illumina). Amplified libraries were purified using an 0.65× SPRI AMPureXP beads incubation followed by an 1.8× SPRI AMPureXP beads incubation. ATAC-seq was performed as described in (Buenrostro et al, 2015) with three modifications. First, the total volume of the tagmentation reaction was halved. Second, the tagmentation reaction was stopped with 44 mM EDTA, 131 mM NaCl, 0.3% SDS and 600 μg/mL proteinase K. Last, a reverse phase 0.65× SPRI beads (Ampure) DNA purification was done after the first PCR.

tag: genotype

value: WT

value: liver ductal organoids

tag: donor id

value: human donor Donor1-D19


title: hLiverOrganoids-wt-histoneChipmentation-hLiverOrganoids-wt-donor19-H3K27me3

description:
ChIPmentation on H3K27me3 of human liver organoids
readCountsInAtacPeaks_rlog2TransVarianceStabilized.txt


title: hLiverOrganoids-ATACseq-V1-WT-D19-5

description:
ATAC sequencing of human liver organoids
readCountsInAtacPeaks_rlog2TransVarianceStabilized.txt


title: P8_rep1

description:
P8_rep1
10x Genomics single cell RNAseq
P8 mouse single retinal cells from 10x Genomics Chromium Single Cell
PolyA RNA
processed data file: 10x_aggregate.mtx
processed data file: genes.tsv
processed data file: barcodes.tsv


title: hLiverOrganoids-ATACseq-V1-p53BAP1KO-FLrescue-D13-PB2newBAP1-3

source_name: BAP1-/- human organoids with 24 hr rescue of full length BAP1 expression

value: human donor Donor2-D13


title: hLiverOrganoids-ATACseq-V1-p53BAP1KO-D19-PBIII-7

source_name: BAP1-/- human organoids


title: hLiverOrganoids-ATACseq-V1-p53BAP1KO-NuclearRescue-D13-PB3oldC4-9

source_name: BAP1-/- human organoids with 24 hr rescue of nuclear-BAP1 expression


title: hLiverOrganoids-ATACseq-V1-p53BAP1KO-D13-PB2new-6


title: hLiverOrganoids-ATACseq-V1-p53BAP1KO-D13-PB2new-2


title: Donor1-D19_BAP1-/- 24hr_rescue

description: bulk RNA sequencing of human liver organoids

source_name: BAP1-/- human organoids with 24 hr rescue of BAP1 expression

value: BAP1-/- + 24hr rescue of BAP1 expression


title: Donor2-D13_BAP1-/- 24hr_rescue


title: Flag-KDM4B


title: hLiverOrganoids-wt-histoneChipmentation-hLiverOrganoids-wt-donor22-H3K9me3

description:
ChIPmentation on H3k9me3 of human liver organoids
readCountsInAtacPeaks_rlog2TransVarianceStabilized.txt

value: human donor Donor4-D22


title: Donor3-D17_WT

value: human donor Donor3-D17


title: Donor3-D17_BAP1-/-


title: hLiverOrganoids-ATACseq-V1-WT-D13-4


title: hLiverOrganoids-ATACseq-V1-WT-D13-1


title: Donor2-D13_BAP1-/-


title: Donor1-D19_BAP1-/-


title: Donor2-D13_WT


title: hLiverOrganoids-ATACseq-V1-p53BAP1KO-FLrescue-D13-PB2newBAP1-8


title: E14 Cell 47

description:
E14_C47
Smart-Seq2 Single cell RNAseq
E14 RPC
PolyA RNA
processed data file: Smart_aggregate.mtx
processed data file: Smart_genes.tsv
processed data file: Smart_cells.tsv


title: Donor1-D19_WT


title: SubQ KO

type: RNA

hyb_protocol: done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA

data_processing: Quality control and a gene level MAS5 normalization were performed with the Affymetrix Expression Console software (Affymetrix version 1.3)

label: biotin

source_name: 2-month-old  Kdm4b KO mice

growth_protocol: mice were growth at room temperature and feed with chow diet

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: mice were fasted for 6 hours before collecting samples

value: subcutaneous fat

tag: gender

value: male

value: Kdm4b KO

value: 2 months


title: BAT KO

scan_protocol: done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA

value: brown fat


title: BAT WT

source_name: 2-month-old  Kdm4b WT mice

label_protocol: done by Technology Center for Genomics & Bioinformatics (TCGB) of UCLA

value: wildtype


title: Epi KO

value: epididymal fat


title: SubQ WT


title: Be2_4G

city: Birmingham

first: Frances

last: Lund

state: AL

address: 1720 2nd Avenue South

department: Microbiology

institute: University of Alabama at Birmingham

description: Gene expression data from Be2 cells, Day 4 of co-coculture with Th2 cells

hyb_protocol: Labeled cRNA was fragmented to an average size of 35 to 200 bases by incubation at 94 degrees C for 35 min. Hybridization (16 hr), washing, and staining of the Affymetrix GeneChip® Mouse Genome U430 Plus 2.0 Array was conducted according to manufacturer specifications in the Affymetrix Fluidics station 450.

scan_protocol: GeneChips were scanned using the Affymetrix Genechip Scanner 3000

data_processing: The signal value of each probe set (gene) was calculated using the Microarray Suite 5 (MAS5) algorithm and normalized using global scaling which set the average signal intensity of an array to 750.  MAS5 values were log2-transformed and a p value for each probe set was calculated using an unpaired t-test. Positive FDR and q values were computed using Matlab (The Mathworks Inc., Natick MA) based on the method of Storey (2002).

source_name: Be2 cell, co-culture day 4

label_protocol: Biotin-labeled cRNA was generated using the Affymetrix one-cycle cDNA synthesis and IVT kit according to manufacturers specifications from 5ug total RNA

growth_protocol: Be1 and Be2 cells were generated by co-culturing splenic B cells with mitomycin C-treated ovalbumin-specific Th1 or Th2 polarized CD4+ T cells (OTII cells) in the presence of IL-2 (20 units/ml), anti-IgM F(ab')2 (40 μg/ml), and OT-II peptide (5 μM) for 1, 2, 3, or 4 days.

extract_protocol: Be1 and Be2 cells were sort purified and washed with PBS prior to lysis. RNA was isolated using the Qiagen RNeasy mini kit followed by DNase I digestion. The quality of the RNA was evaluated by electrophoresis prior to submission.  RINs are not available.

value: B cell

tag: b cell source tissue

value: Spleen

tag: co-culture

tag: time point (day)


title: Be2_4E


title: Be2_4F


title: Epi WT


title: Be2_4B


title: Be2_4A


title: Be2_3G

description: Gene expression data from Be2 cells, Day 3 of co-coculture with Th2 cells

source_name: Be2 cell, co-culture day 3


title: Be1_4D

description: Gene expression data from Be1 cells, Day 4 of co-coculture with Th1 cells

source_name: Be1 cell, co-culture day 4


title: Be2_4D


title: Be1_4C


title: Be1_4F


title: Be1_4B


title: Be1_4A


title: Be2_3D


title: Be1_4E


title: Be1_3G

description: Gene expression data from Be1 cells, Day 3 of co-coculture with Th1 cells

source_name: Be1 cell, co-culture day 3


title: Be2_3E


title: Be2_3F


title: Be2_3A


title: Be2_4C


title: Be2_3B


title: Be2_3C


title: Be1_3D


title: Be1_3E


title: Be1_3F


title: Be1_4G


title: Be1_3B


title: Be1_3C


title: Be1_3A


title: Be2_2D

description: Gene expression data from Be2 cells, Day 2 of co-coculture with Th2 cells

source_name: Be2 cell, co-culture day 2


title: Be2_2F


title: Be2_2G


title: Be2_2C


title: Be1_2G

description: Gene expression data from Be1 cells, Day 2 of co-coculture with Th1 cells

source_name: Be1 cell, co-culture day2


title: Be1_2E


title: Be2_1G

description: Gene expression data from Be2 cells, Day 1 of co-coculture with Th2 cells

source_name: Be2 cell, co-culture day 1


title: Be2_2E


title: Be2_2B


title: Be1_1E

description: Gene expression data from Be1 cells, Day 1 of co-coculture with Th1 cells

source_name: Be1 cell, co-culture day 1


title: Be1_2A


title: Be1_2C


title: Be1_2B


title: Be1_1B


title: Be1_1F


title: Be1_2F


title: Be1_1D


title: Be2_1F


title: CES_ZV_WGBS Sample 491

city: Heidelberg

first: Karsten

last: Rippe

state: Germany

address: Im Neuenheimer Feld 267-BQ24

department: Division of Chromatin Networks

country: Germany

institute: DKFZ

description: bigBed

data_processing:
Base calls performed with Illumina RTA 1.18.64.
In addition to the default pipeline of MethylCtools, an updated version of BWA-MEM (v0.7.12-r1039) was used to align reads to the human reference genome.
Whole-genome bisulfite sequencing data were processed with MethylCtools as previously described in detail (Hovestadt et al, 2014).
DNA methylation levels (beta-values) were calculated for more than 23 million CpG sites covered with at least five reads and supported to be a correct CpG by the sequencing data in individual samples (>75% of reads) (Hovestadt et al, 2014).
hs37d5
bigBed file containing the Beta values for the CpG sites.

source_name: CD19+ B-cells from peripheral blood of CLL patient

extract_protocol:
DNA was extracted with the Allprep DNA/RNA Mini Kit (Qiagen), spiked with unmethylated lambda DNA (Promega) and sonicated to achieve an average size of 250-300 bp. Bisulfite conversion was done using the EZ DNA Methylation kit (Zymo).
Strand-specific WGBS-seq libraries were prepared as described previously (Kretzmer et al, 2015).

tag: disease

value: CLL

tag: donor

value: ZV

tag: treatment


title: Be1_2D


title: Be2_2A


title: Be2_1C


title: Be2_1A


title: Be2_1E


title: Be2_1D


title: Be1_1C


title: Be1_1G


title: CES_YF_WGBS Sample 490

description: bigBed

source_name: Non-malignant B cells of healthy donors

value: Non-malignant

value: YF


title: Be2_1B


title: Be1_1A


title: CES_XP_WGBS Sample 489

description: bigBed

value: XP


title: CES_VL_WGBS Sample 486

description: bigBed

value: VL


title: CES_WS_WGBS Sample 487

description: bigBed

data_processing:
Base calls performed with Illumina RTA 1.18.64.
In addition to the default pipeline of MethylCtools, an updated version of BWA-MEM (v0.7.12-r1039) was used to align reads to the human reference genome.
DNA methylation levels (beta-values) were calculated for more than 23 million CpG sites covered with at least five reads and supported to be a correct CpG by the sequencing data in individual samples (>75% of reads) (Hovestadt et al, 2014).
hs37d5
bigBed file containing the Beta values for the CpG sites.

value: WS


title: CES_TH_WGBS Sample 485

description: bigBed

value: TH


title: CES_WW_WGBS Sample 488

description: bigBed

value: WW


title: CES_RC_WGBS Sample 484

description: bigBed

value: RC


title: Naive_0C

description: Gene expression data from B cells before culture with T cells, time 2

source_name: Naïve B cell, culture day 2

value: none (naïve)


title: Naive_0E

description: Gene expression data from B cells before culture with T cells, time 4

source_name: Naïve B cell, culture day 4


title: Naive_0B

description: Gene expression data from B cells before culture with T cells, time 1

source_name: Naïve B cell, culture day 1


title: CES_QU_WGBS Sample 483

description: bigBed

value: QU


title: CES_CX_WGBS Sample 476

description: bigBed

value: CX


title: CES_KL_WGBS Sample 481

description: bigBed

value: KL