title: ChIP-seq from bipolar spindle neuron (ENCLB546KWN)

description:
https://www.encodeproject.org/experiments/ENCSR821IAK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR821IAK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB546KWN
size range: 200-600

source_name: Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS374AAA at ENCODE; https://www.encodeproject.org/ENCBS374AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from DOHH2 (ENCLB786RXJ)

status: Public on Mar 12 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR859FGW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR859FGW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR742WWB
encode release date: 2016-10-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB786RXJ
size range: 200-600

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens DOHH2 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

tag: antibody

tag: line

value: immortalized cell line

tag: description

value: established from the pleural effusion of a 60-year-old man with refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma in 1990

tag: biosample encode accession

tag: age

value: 60 year

tag: dev stage

tag: Sex

value: male

tag: health state

tag: lab

value: Bradley Bernstein, Broad

tag: link

value: ENCBS652PBR at ENCODE; https://www.encodeproject.org/ENCBS652PBR/

value: Derived from ENCODE donor ENCDO352AAA; https://www.encodeproject.org/ENCDO352AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1179; http://web.expasy.org/cellosaurus/CVCL_1179


title: ChIP-seq from bipolar spindle neuron (ENCLB351ZFU)

description:
https://www.encodeproject.org/experiments/ENCSR821GUG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR821GUG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB351ZFU
size range: 200-600

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/


title: ChIP-seq from OCI-LY7 (ENCLB834XGE)

description:
https://www.encodeproject.org/experiments/ENCSR850QKN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR850QKN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR063AUO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB834XGE
size range: 200-600

source_name: Homo sapiens OCI-LY7 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/a47aaf7e-38f5-4326-914a-98991f61345a/@@download/attachment/Alon%27s%20SCN%20revised.pdf

value: established from the peripheral blood sample of a 48-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL, diffuse large cell lymphoma, DLCL, stage 2A, at relapse) in 1984

value: 48 year

value: B cell lymphoma

value: ENCBS886BJZ at ENCODE; https://www.encodeproject.org/ENCBS886BJZ/

value: Derived from ENCODE donor ENCDO351AAA; https://www.encodeproject.org/ENCDO351AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1881; http://web.expasy.org/cellosaurus/CVCL_1881


title: ChIP-seq from OCI-LY7 (ENCLB316PFB)

description:
https://www.encodeproject.org/experiments/ENCSR850QKN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR850QKN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR063AUO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB316PFB
size range: 200-600

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

value: adult

value: ENCBS121JKZ at ENCODE; https://www.encodeproject.org/ENCBS121JKZ/


title: ChIP-seq from liver (ENCLB378JMZ)

description:
https://www.encodeproject.org/experiments/ENCSR849OTN/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on STL010-human (fragmentation date: 2015-12-09)
experiment encode accession: ENCSR849OTN
assay title: ChIP-seq
encode release date: 2016-01-29
lab: Richard Myers, HAIB
library encode accession: ENCLB378JMZ

source_name: Homo sapiens liver tissue female child (4 years)

value: Control

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: female

value: healthy

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from H1-hESC (ENCLB790WEO)

description:
https://www.encodeproject.org/experiments/ENCSR814XPE/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR814XPE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AMI
encode release date: 2016-11-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB790WEO
size range: 300-600
nucleic acid starting quantity: 107.4
nucleic acid starting quantity units: ng

source_name: Homo sapiens H1-hESC stem cell male embryo

extract_protocol: not provided

value: stem cell

value: embryonic

value: male

value: unknown

value: Bradley Bernstein, Broad

value: ENCBS011NFB at ENCODE; https://www.encodeproject.org/ENCBS011NFB/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/

value: ENCODE dbxrefs Cellosaurus CVCL_9771; http://web.expasy.org/cellosaurus/CVCL_9771


title: ChIP-seq from H1-hESC (ENCLB872HOH)

description:
https://www.encodeproject.org/experiments/ENCSR814XPE/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR814XPE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AMI
encode release date: 2016-11-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB872HOH
size range: 300-600
nucleic acid starting quantity: 60
nucleic acid starting quantity units: ng


title: ChIP-seq from neural cell (ENCLB573OFB)

description:
https://www.encodeproject.org/experiments/ENCSR816JBG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR816JBG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB573OFB
size range: 200-600

source_name: Homo sapiens neural in vitro differentiated cells male embryo

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

value: neural cell

value: in vitro differentiated cells

tag: passage number

value: ENCBS737HIZ at ENCODE; https://www.encodeproject.org/ENCBS737HIZ/


title: ChIP-seq from bipolar spindle neuron (ENCLB639WWE)

description:
https://www.encodeproject.org/experiments/ENCSR821GUG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR821GUG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB639WWE
size range: 200-600

value: bipolar spindle neuron

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS374AAA at ENCODE; https://www.encodeproject.org/ENCBS374AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from SUDHL6 (ENCLB574UBP)

description:
https://www.encodeproject.org/experiments/ENCSR804MDH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR804MDH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB574UBP
size range: 200-600

source_name: Homo sapiens SUDHL6 immortalized cell line

value: immortalized cell line

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: 43 year

value: ENCBS401ZBX at ENCODE; https://www.encodeproject.org/ENCBS401ZBX/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: ChIP-seq from PC-3 (ENCLB802IUL)

description:
https://www.encodeproject.org/experiments/ENCSR849APH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR849APH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB802IUL
size range: 300-600
nucleic acid starting quantity: 36.38
nucleic acid starting quantity units: ng
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens PC-3 immortalized cell line

extract_protocol: extraction method: see document

value: prostate cancer cell line

value: male

value: 62 year

value: grade IV, adenocarcinoma

value: Bradley Bernstein, Broad

value: ENCBS451OVM at ENCODE; https://www.encodeproject.org/ENCBS451OVM/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from KMS-11 (ENCLB864LTO)

description:
https://www.encodeproject.org/experiments/ENCSR806XIU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR806XIU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-12-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB864LTO
size range: 200-600
nucleic acid starting quantity: 142
nucleic acid starting quantity units: ng

source_name: Homo sapiens KMS-11 immortalized cell line

value: multiple myeloma

value: adult

value: female

value: 67 year

value: ENCBS987CHP at ENCODE; https://www.encodeproject.org/ENCBS987CHP/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from HepG2 (ENCLB692OAU)

description:
https://www.encodeproject.org/experiments/ENCSR849DFF/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR849DFF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB692OAU

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-PBX2 fusion protein

value: immortalized cell line

value: A standard Myers lab growth of HepG2, hepatocellular carcinoma

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS734JXY at ENCODE; https://www.encodeproject.org/ENCBS734JXY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from KMS-11 (ENCLB992TPA)

description:
https://www.encodeproject.org/experiments/ENCSR806XIU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR806XIU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-12-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB992TPA
size range: 200-600
nucleic acid starting quantity: 193
nucleic acid starting quantity units: ng

value: multiple myeloma

value: Bradley Bernstein, Broad

value: ENCBS682HMC at ENCODE; https://www.encodeproject.org/ENCBS682HMC/


title: ChIP-seq from bipolar spindle neuron (ENCLB144PHR)

description:
https://www.encodeproject.org/experiments/ENCSR821IAK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR821IAK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR001KCX
encode release date: 2016-10-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB144PHR
size range: 200-600

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from DOHH2 (ENCLB802XVH)

description:
https://www.encodeproject.org/experiments/ENCSR859FGW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR859FGW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR742WWB
encode release date: 2016-10-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB802XVH
size range: 200-600

value: immortalized cell line

value: established from the pleural effusion of a 60-year-old man with refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma in 1990

value: 60 year

value: ENCBS100ZVH at ENCODE; https://www.encodeproject.org/ENCBS100ZVH/

value: Derived from ENCODE donor ENCDO352AAA; https://www.encodeproject.org/ENCDO352AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1179; http://web.expasy.org/cellosaurus/CVCL_1179


title: ChIP-seq from KMS-11 (ENCLB482WWW)

description:
https://www.encodeproject.org/experiments/ENCSR847UJW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR847UJW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-11-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB482WWW
size range: 200-600

value: multiple myeloma

value: female

value: 67 year

value: Bradley Bernstein, Broad

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from SUDHL6 (ENCLB604ZLM)

description:
https://www.encodeproject.org/experiments/ENCSR804MDH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR804MDH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB604ZLM
size range: 300-600
nucleic acid starting quantity: 53
nucleic acid starting quantity units: ng

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: 43 year

value: adult

value: ENCBS401ZBX at ENCODE; https://www.encodeproject.org/ENCBS401ZBX/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: ChIP-seq from HepG2 (ENCLB445YBO)

description:
https://www.encodeproject.org/experiments/ENCSR848YWD/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR848YWD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR476TKW, ENCSR945JOR
encode release date: 2016-09-23
lab: Richard Myers, HAIB
library encode accession: ENCLB445YBO

source_name: Homo sapiens HepG2 immortalized cell line

value: immortalized cell line

value: HepG2, hepatocellular carcinoma

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS775NGD at ENCODE; https://www.encodeproject.org/ENCBS775NGD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB243CMP)

description:
https://www.encodeproject.org/experiments/ENCSR849DFF/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR849DFF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB243CMP

value: A standard Myers lab growth of HepG2, hepatocellular carcinoma

value: ENCBS506FKT at ENCODE; https://www.encodeproject.org/ENCBS506FKT/


title: ChIP-seq from HepG2 (ENCLB741ATD)

description:
https://www.encodeproject.org/experiments/ENCSR848YWD/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR848YWD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR476TKW, ENCSR945JOR
encode release date: 2016-09-23
lab: Richard Myers, HAIB
library encode accession: ENCLB741ATD

value: ENCBS614CMA at ENCODE; https://www.encodeproject.org/ENCBS614CMA/


title: ChIP-seq from gastrocnemius medialis (ENCLB406RQW)

description:
https://www.encodeproject.org/experiments/ENCSR801IPH/
***************
biological replicate number: 1
technical replicate number: 4
description:
experiment encode accession: ENCSR801IPH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB406RQW
size range: 200-600
nucleic acid starting quantity: 53.24
nucleic acid starting quantity units: ng

source_name: Homo sapiens gastrocnemius medialis tissue male adult (37 years)

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: adult

value: 37 year

value: Bradley Bernstein, Broad

value: ENCBS263ACC at ENCODE; https://www.encodeproject.org/ENCBS263ACC/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from gastrocnemius medialis (ENCLB614VQS)

description:
https://www.encodeproject.org/experiments/ENCSR801IPH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR801IPH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB614VQS
size range: 200-600
nucleic acid starting quantity: 41.58
nucleic acid starting quantity units: ng

value: male


title: ChIP-seq from liver (ENCLB345UMT)

description:
https://www.encodeproject.org/experiments/ENCSR847DIT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on MAX-human
experiment encode accession: ENCSR847DIT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR769JUI
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB345UMT

value: MAX

value: liver

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: female

value: healthy

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from gastrocnemius medialis (ENCLB586UIH)

description:
https://www.encodeproject.org/experiments/ENCSR801IPH/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR801IPH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB586UIH
size range: 200-600
nucleic acid starting quantity: 41.58
nucleic acid starting quantity units: ng

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal


title: ChIP-seq from gastrocnemius medialis (ENCLB321HZV)

description:
https://www.encodeproject.org/experiments/ENCSR801IPH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR801IPH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB321HZV
size range: 200-600
nucleic acid starting quantity: 49.5
nucleic acid starting quantity units: ng

value: adult

value: 37 year

value: Bradley Bernstein, Broad

value: ENCBS861DVK at ENCODE; https://www.encodeproject.org/ENCBS861DVK/


title: ChIP-seq from GM12878 (ENCLB791ZRW)

description:
https://www.encodeproject.org/experiments/ENCSR839XZU/
***************
biological replicate number: 2
technical replicate number: 1
description: CREM ChIP-seq on human GM12878
experiment encode accession: ENCSR839XZU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR596QDC, ENCSR237VSG
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB791ZRW

source_name: Homo sapiens GM12878 immortalized cell line

extract_protocol:
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

value: CREM

value: immortalized cell line

value: GM12878, B-lymphocyte, lymphoblastoid

value: unknown

value: Richard Myers, HAIB

value: ENCBS460NBS at ENCODE; https://www.encodeproject.org/ENCBS460NBS/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM12878&Product=CC


title: ChIP-seq from gastrocnemius medialis (ENCLB685HWU)

description:
https://www.encodeproject.org/experiments/ENCSR801IPH/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR801IPH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB685HWU
size range: 200-600
nucleic acid starting quantity: 53.24
nucleic acid starting quantity units: ng

value: male

value: ENCBS263ACC at ENCODE; https://www.encodeproject.org/ENCBS263ACC/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from gastrocnemius medialis (ENCLB016BJY)

description:
https://www.encodeproject.org/experiments/ENCSR801IPH/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR801IPH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR775IMI
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB016BJY
size range: 200-600
nucleic acid starting quantity: 49.5
nucleic acid starting quantity units: ng

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal


title: ChIP-seq from GM12878 (ENCLB284GLV)

description:
https://www.encodeproject.org/experiments/ENCSR839XZU/
***************
biological replicate number: 1
technical replicate number: 1
description: CREM ChIP-seq on human GM12878
experiment encode accession: ENCSR839XZU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR596QDC, ENCSR237VSG
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB284GLV

value: adult

value: female

value: ENCBS845TXY at ENCODE; https://www.encodeproject.org/ENCBS845TXY/

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878


title: ChIP-seq from MCF-7 (ENCLB067CLD)

description:
https://www.encodeproject.org/experiments/ENCSR838ZOW/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on MCF7-human (fragmentation date:2014-10-03
experiment encode accession: ENCSR838ZOW
assay title: ChIP-seq
encode release date: 2016-01-14
lab: Richard Myers, HAIB
library encode accession: ENCLB067CLD

source_name: Homo sapiens MCF-7 immortalized cell line

value: Control

value: immortalized cell line

value: A standard Myers lab growth of MCF-7, mammary gland adenocarcinoma

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS546VBU at ENCODE; https://www.encodeproject.org/ENCBS546VBU/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from SK-N-SH (ENCLB195XWK)

description:
https://www.encodeproject.org/experiments/ENCSR791INM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR791INM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB195XWK
size range: 200-600

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: 4 year

value: child

value: Bradley Bernstein, Broad

value: ENCBS018DDZ at ENCODE; https://www.encodeproject.org/ENCBS018DDZ/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from bipolar spindle neuron (ENCLB277AMA)

description:
https://www.encodeproject.org/experiments/ENCSR839SFJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on biopolar spindle neuron
experiment encode accession: ENCSR839SFJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR170WVI, ENCSR138PGW
encode release date: 2016-11-02
lab: Richard Myers, HAIB
library encode accession: ENCLB277AMA

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from SK-N-SH (ENCLB330VVP)

description:
https://www.encodeproject.org/experiments/ENCSR791INM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR791INM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB330VVP
size range: 200-600

value: immortalized cell line

value: female

value: ENCBS500EWH at ENCODE; https://www.encodeproject.org/ENCBS500EWH/


title: ChIP-seq from HCT116 (ENCLB699OHH)

description:
https://www.encodeproject.org/experiments/ENCSR794ULT/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR794ULT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198WIH
encode release date: 2017-01-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB699OHH
size range: 200-600

source_name: Homo sapiens HCT116 immortalized cell line

value: cells obtained from ATCC

value: unknown

value: colorectal carcinoma

value: ENCBS847SOB at ENCODE; https://www.encodeproject.org/ENCBS847SOB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/

value: ENCODE dbxrefs Cellosaurus CVCL_0291; http://web.expasy.org/cellosaurus/CVCL_0291

value: ATCC sample source; http://www.atcc.org/products/all/CCL-247.aspx#357C3571006A4259B64650D34DF19048


title: ChIP-seq from Loucy (ENCLB628LUQ)

description:
https://www.encodeproject.org/experiments/ENCSR837SUQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR837SUQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB628LUQ
size range: 200-600

source_name: Homo sapiens Loucy immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/eaafee87-23f3-4bb4-adb1-585af01db120/@@download/attachment/ChIP%20New%20General%20ChIP%20Protocol%20041510%20v05.pdf

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: Bradley Bernstein, Broad

value: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from bipolar spindle neuron (ENCLB505QRO)

description:
https://www.encodeproject.org/experiments/ENCSR839SFJ/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on biopolar spindle neuron
experiment encode accession: ENCSR839SFJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR170WVI, ENCSR138PGW
encode release date: 2016-11-02
lab: Richard Myers, HAIB
library encode accession: ENCLB505QRO

source_name: Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from liver (ENCLB932PIY)

description:
https://www.encodeproject.org/experiments/ENCSR837GTK/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on JUND-human
experiment encode accession: ENCSR837GTK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR621CSR, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB932PIY

source_name: Homo sapiens liver tissue male adult (32 years)

value: JUND

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: healthy with non-obstructive CAD (coronary artery disease)

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from liver (ENCLB373PCE)

description:
https://www.encodeproject.org/experiments/ENCSR837GTK/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on JUND-human
experiment encode accession: ENCSR837GTK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR621CSR, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB373PCE


title: ChIP-seq from KMS-11 (ENCLB039UBM)

description:
https://www.encodeproject.org/experiments/ENCSR790QWJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR790QWJ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-11-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB039UBM
size range: 200-600

value: immortalized cell line

value: multiple myeloma

value: female

value: 67 year

value: Bradley Bernstein, Broad

value: ENCBS682HMC at ENCODE; https://www.encodeproject.org/ENCBS682HMC/

value: Derived from ENCODE donor ENCDO133EXU; https://www.encodeproject.org/ENCDO133EXU/

value: ENCODE dbxrefs Cellosaurus CVCL_2989; http://web.expasy.org/cellosaurus/CVCL_2989


title: ChIP-seq from KMS-11 (ENCLB348COJ)

description:
https://www.encodeproject.org/experiments/ENCSR790QWJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR790QWJ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR720GSE
encode release date: 2016-11-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB348COJ
size range: 200-600
nucleic acid starting quantity: 268
nucleic acid starting quantity units: ng

value: adult

value: ENCBS987CHP at ENCODE; https://www.encodeproject.org/ENCBS987CHP/


title: ChIP-seq from liver (ENCLB839XAG)

description:
https://www.encodeproject.org/experiments/ENCSR847DIT/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on MAX-human
experiment encode accession: ENCSR847DIT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR849OTN, ENCSR769JUI
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB839XAG

value: MAX

value: liver

value: tissue

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: healthy

value: Michael Snyder, Stanford

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from OCI-LY1 (ENCLB709PBE)

description:
https://www.encodeproject.org/experiments/ENCSR790EDQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR790EDQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR569IIN
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB709PBE
size range: 200-600

source_name: Homo sapiens OCI-LY1 immortalized cell line

value: immortalized cell line

value: established from the bone marrow of a 44-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL; diffuse large cell), stage 4B at relapse in 1983

value: 44 year

value: male

value: B cell lymphoma

value: ENCBS729LWO at ENCODE; https://www.encodeproject.org/ENCBS729LWO/

value: Derived from ENCODE donor ENCDO350AAA; https://www.encodeproject.org/ENCDO350AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1879; http://web.expasy.org/cellosaurus/CVCL_1879


title: ChIP-seq from K562 (ENCLB556AAM)

description:
https://www.encodeproject.org/experiments/ENCSR830KKO/
***************
biological replicate number: 12
technical replicate number: 2
description: Reverse Crosslink Control ChIP-seq on human K562 (fragmentation date 04-08-13)
experiment encode accession: ENCSR830KKO
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB556AAM

source_name: Homo sapiens K562 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

value: Control

value: K562, myelogenous leukemia

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS601AAA at ENCODE; https://www.encodeproject.org/ENCBS601AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from PC-3 (ENCLB433HKO)

description:
https://www.encodeproject.org/experiments/ENCSR788EQL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR788EQL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-11-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB433HKO
size range: 300-600
nucleic acid starting quantity: 133.96
nucleic acid starting quantity units: ng

value: immortalized cell line

value: prostate cancer cell line

value: 62 year

value: grade IV, adenocarcinoma

value: Bradley Bernstein, Broad

value: ENCBS596CTT at ENCODE; https://www.encodeproject.org/ENCBS596CTT/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from SK-N-MC (ENCLB020HPB)

description:
https://www.encodeproject.org/experiments/ENCSR835MMN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq against H3K27ac using SK-N-MC cell line which was previously described as a neuroepithelioma (ATCC HTB-10). However recent evidence reveals it is Ewing's Sarcoma (www.ncbi.nlm.nih.gov/pubmed/15548687, www.ncbi.nlm.nih.gov/biosample/3151999, www.ncbi.nlm.nih.gov/pubmed/25453903).
experiment encode accession: ENCSR835MMN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR899XXQ
encode release date: 2016-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB020HPB
size range: 200-600

source_name: Homo sapiens SK-N-MC immortalized cell line

value: SK-N-MC

value: Please note:This cell line was previously described as a neuroepithelioma (ATCC HTB-10).  However recent evidence reveals it is Ewing's Sarcoma (http://www.ncbi.nlm.nih.gov/pubmed/15548687, http://www.ncbi.nlm.nih.gov/biosample/3151999, http://www.ncbi.nlm.nih.gov/pubmed/25453903).

value: child

value: female

value: 14 year

value: Ewing's sarcoma

value: ENCBS203EZT at ENCODE; https://www.encodeproject.org/ENCBS203EZT/

value: Derived from ENCODE donor ENCDO000ABC; https://www.encodeproject.org/ENCDO000ABC/

value: ENCODE dbxrefs Cellosaurus CVCL_0530; http://web.expasy.org/cellosaurus/CVCL_0530


title: ChIP-seq from K562 (ENCLB502JAX)

description:
https://www.encodeproject.org/experiments/ENCSR837EYC/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR837EYC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR599SPN, ENCSR000FCA
encode release date: 2016-06-16
lab: Richard Myers, HAIB
library encode accession: ENCLB502JAX

value: immortalized cell line

value: K562, myelogenous leukemia

value: 53 year

value: adult

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS316CKF at ENCODE; https://www.encodeproject.org/ENCBS316CKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HepG2 (ENCLB426JDA)

description:
https://www.encodeproject.org/experiments/ENCSR826YMT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR826YMT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB426JDA

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS813LBD at ENCODE; https://www.encodeproject.org/ENCBS813LBD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from smooth muscle cell (ENCLB160PJU)

description:
https://www.encodeproject.org/experiments/ENCSR783AXV/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR783AXV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB160PJU
size range: 200-600

source_name: Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9

value: smooth muscle cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS780PCJ at ENCODE; https://www.encodeproject.org/ENCBS780PCJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from smooth muscle cell (ENCLB119OKC)

description:
https://www.encodeproject.org/experiments/ENCSR783AXV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR783AXV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB119OKC
size range: 200-600
nucleic acid starting quantity: 96.25
nucleic acid starting quantity units: ng

value: Richard Myers, HAIB

value: ENCBS899TTJ at ENCODE; https://www.encodeproject.org/ENCBS899TTJ/


title: ChIP-seq from HepG2 (ENCLB823IUF)

description:
https://www.encodeproject.org/experiments/ENCSR826YMT/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR826YMT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB823IUF

value: immortalized cell line

value: child

value: ENCBS903BJD at ENCODE; https://www.encodeproject.org/ENCBS903BJD/


title: ChIP-seq from ACC112 (ENCLB397TBN)

description:
https://www.encodeproject.org/experiments/ENCSR778VGY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR778VGY
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR836XKP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB397TBN
size range: 200-600

source_name: Homo sapiens ACC112 immortalized cell line

value: adenoid cystic carcinoma cell line supplied by Lurdes Queimado, M.D., Ph.D.Phone:405-271-4232 (office); 405-271-4279 (lab); cells immortalized by infection with a retrovirus expressing HPV16 E6 and E7

value: adult

value: male

value: 70 year

value: submaxillar tumor

value: Bradley Bernstein, Broad

value: ENCBS827JIC at ENCODE; https://www.encodeproject.org/ENCBS827JIC/

value: Derived from ENCODE donor ENCDO085ZKK; https://www.encodeproject.org/ENCDO085ZKK/

value: ENCODE dbxrefs Cellosaurus CVCL_Y492; http://web.expasy.org/cellosaurus/CVCL_Y492


title: ChIP-seq from OCI-LY3 (ENCLB547ORF)

description:
https://www.encodeproject.org/experiments/ENCSR779KYW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR779KYW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR361GKY
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB547ORF
size range: 300-600
nucleic acid starting quantity: 13.566
nucleic acid starting quantity units: ng

source_name: Homo sapiens OCI-LY3 immortalized cell line

value: Oci-Ly-3- Immortalized diffuse large B cell lymphoma cell line developed at the Ontario Cancer Institute

value: 52 year

value: B cell lymphoma

value: ENCBS757GPD at ENCODE; https://www.encodeproject.org/ENCBS757GPD/

value: Derived from ENCODE donor ENCDO355AAA; https://www.encodeproject.org/ENCDO355AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_8800; http://web.expasy.org/cellosaurus/CVCL_8800


title: ChIP-seq from K562 (ENCLB556AAL)

description:
https://www.encodeproject.org/experiments/ENCSR824WND/
***************
biological replicate number: 12
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human K562 (fragmentation date 12-13-12)
experiment encode accession: ENCSR824WND
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB556AAL

value: Control

value: immortalized cell line

value: K562, myelogenous leukemia

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS601AAA at ENCODE; https://www.encodeproject.org/ENCBS601AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from PC-3 (ENCLB560SRL)

description:
https://www.encodeproject.org/experiments/ENCSR826UTD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR826UTD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB560SRL
size range: 300-600
nucleic acid starting quantity: 15.606
nucleic acid starting quantity units: ng

source_name: Homo sapiens PC-3 immortalized cell line

value: prostate cancer cell line

value: adult

value: male

value: 62 year

value: grade IV, adenocarcinoma

value: Bradley Bernstein, Broad

value: ENCBS451OVM at ENCODE; https://www.encodeproject.org/ENCBS451OVM/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from neuroepithelial stem cell (ENCLB843KFD)

description:
https://www.encodeproject.org/experiments/ENCSR803UDX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR803UDX
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB843KFD
size range: 200-600

source_name: Homo sapiens neuroepithelial stem in vitro differentiated cells female embryo (5 days) derived from H9 stably expressing C-terminal eGFP-HES5 fusion protein

value: Control

value: neuroepithelial stem cell

value: in vitro differentiated cells

value: Neuroepithelial cells were collected at day 12 of differentiation (see protocol)

value: embryonic

value: female

value: 5 day

value: healthy

value: ENCBS435FHS at ENCODE; https://www.encodeproject.org/ENCBS435FHS/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from thyroid gland (ENCLB429CWK)

description:
https://www.encodeproject.org/experiments/ENCSR777VQP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR777VQP
assay title: ChIP-seq
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB429CWK
size range: 200-600

source_name: Homo sapiens thyroid gland tissue male adult (37 years)

value: thyroid gland

value: tissue

value: adult

value: male

value: 37 year

value: ENCBS522TJW at ENCODE; https://www.encodeproject.org/ENCBS522TJW/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from OCI-LY3 (ENCLB843OPB)

description:
https://www.encodeproject.org/experiments/ENCSR779KYW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR779KYW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR361GKY
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB843OPB
size range: 200-600

value: immortalized cell line

value: Oci-Ly-3- Immortalized diffuse large B cell lymphoma cell line developed at the Ontario Cancer Institute

value: 52 year

value: B cell lymphoma

value: Bradley Bernstein, Broad

value: ENCBS018GXW at ENCODE; https://www.encodeproject.org/ENCBS018GXW/

value: Derived from ENCODE donor ENCDO355AAA; https://www.encodeproject.org/ENCDO355AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_8800; http://web.expasy.org/cellosaurus/CVCL_8800


title: ChIP-seq from ACC112 (ENCLB910CGH)

description:
https://www.encodeproject.org/experiments/ENCSR778VGY/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR778VGY
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR836XKP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB910CGH
size range: 200-600

value: adenoid cystic carcinoma cell line supplied by Lurdes Queimado, M.D., Ph.D.Phone:405-271-4232 (office); 405-271-4279 (lab); cells immortalized by infection with a retrovirus expressing HPV16 E6 and E7

value: 70 year

value: submaxillar tumor

value: ENCBS827JIC at ENCODE; https://www.encodeproject.org/ENCBS827JIC/

value: Derived from ENCODE donor ENCDO085ZKK; https://www.encodeproject.org/ENCDO085ZKK/

value: ENCODE dbxrefs Cellosaurus CVCL_Y492; http://web.expasy.org/cellosaurus/CVCL_Y492


title: ChIP-seq from ACC112 (ENCLB910KFT)

description:
https://www.encodeproject.org/experiments/ENCSR778VGY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR778VGY
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR836XKP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB910KFT
size range: 200-600

value: adult

value: male

value: ENCBS726UUU at ENCODE; https://www.encodeproject.org/ENCBS726UUU/


title: ChIP-seq from HepG2 (ENCLB695ZQY)

description:
https://www.encodeproject.org/experiments/ENCSR823ADL/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR823ADL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB695ZQY

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-RFXANK fusion protein, N-terminal FLAG-RFXANK fusion protein

value: FLAG-RFXANK

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS316AOL at ENCODE; https://www.encodeproject.org/ENCBS316AOL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from K562 (ENCLB319SSO)

description:
https://www.encodeproject.org/experiments/ENCSR863KUB/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR863KUB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR599SPN, ENCSR000FCA
encode release date: 2016-01-14
lab: Richard Myers, HAIB
library encode accession: ENCLB319SSO

value: K562, myelogenous leukemia

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS316CKF at ENCODE; https://www.encodeproject.org/ENCBS316CKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HepG2 (ENCLB770SHH)

description:
https://www.encodeproject.org/experiments/ENCSR819WZE/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR819WZE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR476TKW, ENCSR381PHD
encode release date: 2016-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB770SHH

source_name: Homo sapiens HepG2 immortalized cell line

value: HepG2, hepatocellular carcinoma

value: male

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB649UZW)

description:
https://www.encodeproject.org/experiments/ENCSR837EYC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR837EYC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR599SPN, ENCSR000FCA
encode release date: 2016-06-16
lab: Richard Myers, HAIB
library encode accession: ENCLB649UZW

value: immortalized cell line

value: adult

value: ENCBS602AAA at ENCODE; https://www.encodeproject.org/ENCBS602AAA/


title: ChIP-seq from HepG2 (ENCLB134DGZ)

description:
https://www.encodeproject.org/experiments/ENCSR819WZE/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR819WZE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR476TKW, ENCSR381PHD
encode release date: 2016-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB134DGZ

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS614CMA at ENCODE; https://www.encodeproject.org/ENCBS614CMA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from gastrocnemius medialis (ENCLB112SSV)

description:
https://www.encodeproject.org/experiments/ENCSR775IMI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR775IMI
assay title: ChIP-seq
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB112SSV
size range: 200-600

source_name: Homo sapiens gastrocnemius medialis tissue male adult (37 years)

value: Control

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: 37 year

value: Bradley Bernstein, Broad

value: ENCBS263ACC at ENCODE; https://www.encodeproject.org/ENCBS263ACC/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from induced pluripotent stem cell (ENCLB805XQM)

description:
https://www.encodeproject.org/experiments/ENCSR773IYZ/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR773IYZ
assay title: ChIP-seq
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB805XQM
size range: 200-600

source_name: Homo sapiens induced pluripotent stem cell line male adult (53 years) derived from fibroblast of arm

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: male

value: Thomas Gingeras, CSHL

value: ENCBS373AAA at ENCODE; https://www.encodeproject.org/ENCBS373AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from H1-hESC (ENCLB893KQS)

description:
https://www.encodeproject.org/experiments/ENCSR814XPE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR814XPE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AMI
encode release date: 2016-11-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB893KQS
size range: 200-600

source_name: Homo sapiens H1-hESC stem cell male embryo

value: stem cell

value: embryonic

value: unknown

value: healthy

value: ENCBS253TYD at ENCODE; https://www.encodeproject.org/ENCBS253TYD/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from induced pluripotent stem cell (ENCLB979OXO)

description:
https://www.encodeproject.org/experiments/ENCSR773IYZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR773IYZ
assay title: ChIP-seq
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB979OXO
size range: 200-600

value: Control

value: adult

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/


title: ChIP-seq from neural cell (ENCLB146WFQ)

description:
https://www.encodeproject.org/experiments/ENCSR816JBG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR816JBG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB146WFQ
size range: 300-800

source_name: Homo sapiens neural in vitro differentiated cells male embryo

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf

value: neural cell

value: in vitro differentiated cells

value: Bradley Bernstein, Broad

value: ENCBS504GFW at ENCODE; https://www.encodeproject.org/ENCBS504GFW/


title: ChIP-seq from B cell (ENCLB695AIV)

description:
https://www.encodeproject.org/experiments/ENCSR805DRF/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human CD20+ Control
experiment encode accession: ENCSR805DRF
assay title: ChIP-seq
encode release date: 2016-11-07
lab: Bradley Bernstein, Broad
library encode accession: ENCLB695AIV

source_name: Homo sapiens B primary cell female adult (43 years)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/f10bdd36-e370-4777-a7f3-83091c115749/@@download/attachment/wgEncodeBroadHistone.html.pdf

value: B cell

value: primary cell

value: female

value: 43 year

value: normal

value: ENCBS098ETX at ENCODE; https://www.encodeproject.org/ENCBS098ETX/

value: Derived from ENCODE donor ENCDO114AAA; https://www.encodeproject.org/ENCDO114AAA/


title: ChIP-seq from PC-3 (ENCLB689IWN)

description:
https://www.encodeproject.org/experiments/ENCSR764KFK/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR764KFK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-11-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB689IWN
size range: 300-600
nucleic acid starting quantity: 17.952
nucleic acid starting quantity units: ng

value: immortalized cell line

value: prostate cancer cell line

value: male

value: 62 year

value: grade IV, adenocarcinoma

value: ENCBS596CTT at ENCODE; https://www.encodeproject.org/ENCBS596CTT/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from SUDHL6 (ENCLB307NLD)

description:
https://www.encodeproject.org/experiments/ENCSR804MDH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR804MDH
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB307NLD
size range: 200-600

source_name: Homo sapiens SUDHL6 immortalized cell line

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: adult

value: Bradley Bernstein, Broad

value: ENCBS107PVI at ENCODE; https://www.encodeproject.org/ENCBS107PVI/

value: Derived from ENCODE donor ENCDO353AAA; https://www.encodeproject.org/ENCDO353AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2206; http://web.expasy.org/cellosaurus/CVCL_2206


title: ChIP-seq from Loucy (ENCLB800HOV)

description:
https://www.encodeproject.org/experiments/ENCSR760ZVL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR760ZVL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB800HOV
size range: 200-600

source_name: Homo sapiens Loucy immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/61c0d277-54c3-4e17-afcd-4059b22d89f6/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v09.1.pdf

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: female

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS708EFA at ENCODE; https://www.encodeproject.org/ENCBS708EFA/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from SUDHL6 (ENCLB223QLS)

description:
https://www.encodeproject.org/experiments/ENCSR771QCM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR771QCM
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2016-12-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB223QLS
size range: 200-600

value: immortalized cell line

value: 43 year

value: male

value: large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma

value: ENCBS401ZBX at ENCODE; https://www.encodeproject.org/ENCBS401ZBX/


title: ChIP-seq from SUDHL6 (ENCLB882ZXV)

description:
https://www.encodeproject.org/experiments/ENCSR771QCM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR771QCM
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR179YLS
encode release date: 2016-12-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB882ZXV
size range: 200-600

value: also called SU-DHL-6 (diffuse histiocytic lymphoma) - disease:large cell lymphoma; diffuse mixed histiocytic and lymphocytic lymphoma; follicular B cell lymphoma; ATCC CRL-2959

value: adult

value: Bradley Bernstein, Broad

value: ENCBS107PVI at ENCODE; https://www.encodeproject.org/ENCBS107PVI/


title: ChIP-seq from HepG2 (ENCLB884ZRD)

description:
https://www.encodeproject.org/experiments/ENCSR808FFI/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR808FFI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB884ZRD

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ZKSCAN8 fusion protein, N-terminal FLAG-ZKSCAN8 fusion protein

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS361LLB at ENCODE; https://www.encodeproject.org/ENCBS361LLB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB802MHQ)

description:
https://www.encodeproject.org/experiments/ENCSR808FFI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR808FFI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB802MHQ

value: ENCBS879PSL at ENCODE; https://www.encodeproject.org/ENCBS879PSL/


title: ChIP-seq from PC-9 (ENCLB187KMZ)

description:
https://www.encodeproject.org/experiments/ENCSR769FOC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR769FOC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB187KMZ
size range: 200-600

source_name: Homo sapiens PC-9 immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: ENCBS987JQH at ENCODE; https://www.encodeproject.org/ENCBS987JQH/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from HepG2 (ENCLB040AHP)

description:
https://www.encodeproject.org/experiments/ENCSR800QIT/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR800QIT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR716SYG, ENCSR524VNV
encode release date: 2016-09-09
lab: Richard Myers, HAIB
library encode accession: ENCLB040AHP

value: immortalized cell line

value: HepG2, hepatocellular carcinoma

value: male

value: ENCBS684ULB at ENCODE; https://www.encodeproject.org/ENCBS684ULB/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from Loucy (ENCLB046LHV)

description:
https://www.encodeproject.org/experiments/ENCSR760ZVL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR760ZVL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB046LHV
size range: 200-600

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: female

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: Bradley Bernstein, Broad

value: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from body of pancreas (ENCLB176JHX)

description:
https://www.encodeproject.org/experiments/ENCSR760EGQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR760EGQ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB176JHX
size range: 200-600

source_name: Homo sapiens body of pancreas tissue male adult (37 years)

value: body of pancreas

value: tissue

value: 37 year

value: ENCBS869MHP at ENCODE; https://www.encodeproject.org/ENCBS869MHP/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from body of pancreas (ENCLB626JOC)

description:
https://www.encodeproject.org/experiments/ENCSR760EGQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR760EGQ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR888RBQ
encode release date: 2016-10-24
lab: Bradley Bernstein, Broad
library encode accession: ENCLB626JOC
size range: 200-600

value: male


title: ChIP-seq from neuroepithelial stem cell (ENCLB211AGJ)

description:
https://www.encodeproject.org/experiments/ENCSR803UDX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR803UDX
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB211AGJ
size range: 300-1000

value: Control

value: neuroepithelial stem cell

value: in vitro differentiated cells

value: Neuroepithelial cells were collected at day 12 of differentiation (see protocol)

value: embryonic

value: 5 day

value: healthy

value: ENCBS363SWF at ENCODE; https://www.encodeproject.org/ENCBS363SWF/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from HepG2 (ENCLB835RDE)

description:
https://www.encodeproject.org/experiments/ENCSR823ADL/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR823ADL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB835RDE

value: FLAG-RFXANK

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS993XRK at ENCODE; https://www.encodeproject.org/ENCBS993XRK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from MM.1S (ENCLB812WET)

description:
https://www.encodeproject.org/experiments/ENCSR758OEC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR758OEC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB812WET
size range: 300-600
nucleic acid starting quantity: 15.708
nucleic acid starting quantity units: ng

source_name: Homo sapiens MM.1S immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: Bradley Bernstein, Broad

value: ENCBS981ZAE at ENCODE; https://www.encodeproject.org/ENCBS981ZAE/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from MM.1S (ENCLB399ALW)

description:
https://www.encodeproject.org/experiments/ENCSR758OEC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR758OEC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB399ALW
size range: 300-600
nucleic acid starting quantity: 82.62
nucleic acid starting quantity units: ng

value: ENCBS241TLI at ENCODE; https://www.encodeproject.org/ENCBS241TLI/


title: ChIP-seq from HepG2 (ENCLB489XYO)

description:
https://www.encodeproject.org/experiments/ENCSR800QIT/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR800QIT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR716SYG, ENCSR524VNV
encode release date: 2016-09-09
lab: Richard Myers, HAIB
library encode accession: ENCLB489XYO

value: immortalized cell line

value: HepG2, hepatocellular carcinoma

value: male

value: ENCBS250DDC at ENCODE; https://www.encodeproject.org/ENCBS250DDC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from hepatocyte (ENCLB041OBU)

description:
https://www.encodeproject.org/experiments/ENCSR758GMX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR758GMX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB041OBU
size range: 200-600

source_name: Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: healthy

value: Richard Myers, HAIB

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from B cell (ENCLB141BRI)

description:
https://www.encodeproject.org/experiments/ENCSR799SLA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR799SLA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AUW, ENCSR805DRF
encode release date: 2017-01-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB141BRI
size range: 200-600

source_name: Homo sapiens B primary cell female adult (27 years)

value: B cell

value: primary cell

value: adult

value: female

value: 27 year

value: normal

value: Bradley Bernstein, Broad

value: ENCBS836CYW at ENCODE; https://www.encodeproject.org/ENCBS836CYW/

value: Derived from ENCODE donor ENCDO115AAA; https://www.encodeproject.org/ENCDO115AAA/


title: ChIP-seq from B cell (ENCLB476GGV)

description:
https://www.encodeproject.org/experiments/ENCSR799SLA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR799SLA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AUW, ENCSR805DRF
encode release date: 2017-01-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB476GGV
size range: 200-600

value: 43 year

value: ENCBS098ETX at ENCODE; https://www.encodeproject.org/ENCBS098ETX/

value: Derived from ENCODE donor ENCDO114AAA; https://www.encodeproject.org/ENCDO114AAA/


title: ChIP-seq from MCF-7 (ENCLB632NJV)

description:
https://www.encodeproject.org/experiments/ENCSR752UOD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR752UOD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2016-06-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB632NJV
size range: 200-600
nucleic acid starting quantity: 17.6
nucleic acid starting quantity units: ng

source_name: Homo sapiens MCF-7 immortalized cell line

value: immortalized cell line

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS789UPK at ENCODE; https://www.encodeproject.org/ENCBS789UPK/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from HCT116 (ENCLB146FGR)

description:
https://www.encodeproject.org/experiments/ENCSR794ULT/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR794ULT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198WIH
encode release date: 2017-01-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB146FGR
size range: 200-600

source_name: Homo sapiens HCT116 immortalized cell line

value: cells obtained from ATCC

value: unknown

value: male

value: colorectal carcinoma

value: ENCBS494OPB at ENCODE; https://www.encodeproject.org/ENCBS494OPB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/

value: ENCODE dbxrefs Cellosaurus CVCL_0291; http://web.expasy.org/cellosaurus/CVCL_0291

value: ATCC sample source; http://www.atcc.org/products/all/CCL-247.aspx#357C3571006A4259B64650D34DF19048


title: ChIP-seq from HepG2 (ENCLB046LLH)

description:
https://www.encodeproject.org/experiments/ENCSR798IJO/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR798IJO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB046LLH

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-NR2F6 fusion protein

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS238TKH at ENCODE; https://www.encodeproject.org/ENCBS238TKH/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from K562 (ENCLB079DEF)

description:
https://www.encodeproject.org/experiments/ENCSR795IYP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR795IYP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR000FCA
encode release date: 2016-03-02
lab: Richard Myers, HAIB
library encode accession: ENCLB079DEF

source_name: Homo sapiens K562 immortalized cell line

value: JUNB

value: immortalized cell line

value: K562, myelogenous leukemia

value: 53 year

value: adult

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS577JGM at ENCODE; https://www.encodeproject.org/ENCBS577JGM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from PC-3 (ENCLB468TAY)

description:
https://www.encodeproject.org/experiments/ENCSR788EQL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR788EQL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-11-09
lab: Bradley Bernstein, Broad
library encode accession: ENCLB468TAY
size range: 300-600
nucleic acid starting quantity: 88.4
nucleic acid starting quantity units: ng

source_name: Homo sapiens PC-3 immortalized cell line

value: prostate cancer cell line

value: male

value: 62 year

value: grade IV, adenocarcinoma

value: Bradley Bernstein, Broad

value: ENCBS451OVM at ENCODE; https://www.encodeproject.org/ENCBS451OVM/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from HepG2 (ENCLB566GZQ)

description:
https://www.encodeproject.org/experiments/ENCSR770AOR/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR770AOR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB566GZQ

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-ELF3 fusion protein, C-terminal FLAG-ELF3 fusion protein

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS104USG at ENCODE; https://www.encodeproject.org/ENCBS104USG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from OCI-LY7 (ENCLB965RWV)

description:
https://www.encodeproject.org/experiments/ENCSR747ZDF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR747ZDF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR063AUO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB965RWV
size range: 200-600

source_name: Homo sapiens OCI-LY7 immortalized cell line

value: established from the peripheral blood sample of a 48-year-old man with B-cell Non-Hodgkin lymphoma (B-NHL, diffuse large cell lymphoma, DLCL, stage 2A, at relapse) in 1984

value: 48 year

value: adult

value: B cell lymphoma

value: ENCBS699NWP at ENCODE; https://www.encodeproject.org/ENCBS699NWP/

value: Derived from ENCODE donor ENCDO351AAA; https://www.encodeproject.org/ENCDO351AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1881; http://web.expasy.org/cellosaurus/CVCL_1881


title: ChIP-seq from K562 (ENCLB251AFN)

description:
https://www.encodeproject.org/experiments/ENCSR795IYP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR795IYP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR000FCA
encode release date: 2016-03-02
lab: Richard Myers, HAIB
library encode accession: ENCLB251AFN

value: JUNB

value: K562, myelogenous leukemia

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS602AAA at ENCODE; https://www.encodeproject.org/ENCBS602AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from adrenal gland (ENCLB201QXG)

description:
https://www.encodeproject.org/experiments/ENCSR754WVA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR754WVA
assay title: ChIP-seq
encode release date: 2016-06-30
lab: Bradley Bernstein, Broad
library encode accession: ENCLB201QXG
size range: 200-600

source_name: Homo sapiens adrenal gland tissue male adult (37 years)

value: Control

value: adrenal gland

value: tissue

value: EnTEX:Adrenal Gland

value: male

value: 37 year

value: Bradley Bernstein, Broad

value: ENCBS232HQQ at ENCODE; https://www.encodeproject.org/ENCBS232HQQ/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HepG2 (ENCLB663KEA)

description:
https://www.encodeproject.org/experiments/ENCSR798IJO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR798IJO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB663KEA

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS938JPY at ENCODE; https://www.encodeproject.org/ENCBS938JPY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from thyroid gland (ENCLB157TXA)

description:
https://www.encodeproject.org/experiments/ENCSR748LUA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR748LUA
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR777VQP
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB157TXA
size range: 200-600

source_name: Homo sapiens thyroid gland tissue male adult (37 years)

value: thyroid gland

value: adult

value: ENCBS522TJW at ENCODE; https://www.encodeproject.org/ENCBS522TJW/


title: ChIP-seq from thyroid gland (ENCLB840NND)

description:
https://www.encodeproject.org/experiments/ENCSR748LUA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR748LUA
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR777VQP
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB840NND
size range: 200-600

value: tissue


title: ChIP-seq from HepG2 (ENCLB993KTG)

description:
https://www.encodeproject.org/experiments/ENCSR770AOR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR770AOR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB993KTG

value: ENCBS138IVJ at ENCODE; https://www.encodeproject.org/ENCBS138IVJ/


title: ChIP-seq from A673 (ENCLB268GQB)

description:
https://www.encodeproject.org/experiments/ENCSR747BYL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR747BYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR196CXJ
encode release date: 2017-01-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB268GQB
size range: 200-600

source_name: Homo sapiens A673 immortalized cell line

value: Cell line is A673; this is a purchasable public domain cell type per Miguel Rivera, M.D.

value: unknown

value: female

value: ENCBS615MBV at ENCODE; https://www.encodeproject.org/ENCBS615MBV/

value: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/

value: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080


title: ChIP-seq from GM12878 (ENCLB784QOP)

description:
https://www.encodeproject.org/experiments/ENCSR785WMC/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on GM12878-human (fragmentation date:2014-10-13)
experiment encode accession: ENCSR785WMC
assay title: ChIP-seq
encode release date: 2016-01-14
lab: Richard Myers, HAIB
library encode accession: ENCLB784QOP

source_name: Homo sapiens GM12878 immortalized cell line

value: Control

value: immortalized cell line

value: A standard Myers lab growth of GM12878, B-lymphocyte, lymphoblastoid

value: ENCBS232JAP at ENCODE; https://www.encodeproject.org/ENCBS232JAP/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM12878&Product=CC


title: ChIP-seq from induced pluripotent stem cell (ENCLB463KXQ)

description:
https://www.encodeproject.org/experiments/ENCSR740FYN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR740FYN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2017-01-13
lab: Bradley Bernstein, Broad
library encode accession: ENCLB463KXQ
size range: 200-600
nucleic acid starting quantity: 99.25
nucleic acid starting quantity units: ng

source_name: Homo sapiens induced pluripotent stem cell line male adult (53 years) derived from fibroblast of arm

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS373AAA at ENCODE; https://www.encodeproject.org/ENCBS373AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from H9 (ENCLB305TVL)

description:
https://www.encodeproject.org/experiments/ENCSR754VAJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR754VAJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR625CEM
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB305TVL
size range: 200-600
nucleic acid starting quantity: 22.7
nucleic acid starting quantity units: ng

source_name: Homo sapiens H9 stem cell female embryo (5 days) stably expressing C-terminal eGFP-HES5 fusion protein

value: stem cell

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter

value: embryonic

value: female

value: 5 day

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS769EPD at ENCODE; https://www.encodeproject.org/ENCBS769EPD/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_9773; http://web.expasy.org/cellosaurus/CVCL_9773


title: ChIP-seq from gastrocnemius medialis (ENCLB355NZH)

description:
https://www.encodeproject.org/experiments/ENCSR736ALU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR736ALU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR001UFN
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB355NZH
size range: 200-600

source_name: Homo sapiens gastrocnemius medialis tissue female adult (53 years)

value: gastrocnemius medialis

value: tissue

value: i.e. REMC 6, 13, 14 and 15; EnTEX:Muscle - Skeletal

value: adult

value: 53 year

value: ENCBS866HOM at ENCODE; https://www.encodeproject.org/ENCBS866HOM/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from PC-9 (ENCLB838GYU)

description:
https://www.encodeproject.org/experiments/ENCSR769FOC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR769FOC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR011GWK
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB838GYU
size range: 200-600

source_name: Homo sapiens PC-9 immortalized cell line

value: immortalized cell line

value: PC-14 was originally deposited with the Riken BioResource Center as a cell line derived from human lung adenocarcinoma (undifferentiated type) in 1989. The RIKEN BioResource Center subsequently informed the European Collection of Cell Cultures (ECACC) that short tandem repeat (STR) DNA profile analysis, undertaken in collaboration Immuno-Biological Laboratories Co., Ltd Japan, has shown this cell line to be identical to PC-9 a cell line derived from human lung adenocarcinoma (differentiated type). The misidentification occurred prior to the cell line being deposited at the RIKEN BioResource Center. The name of the cell line has been changed to PC-9 to reflect this finding

value: unknown

value: not collected

value: ENCBS177ANS at ENCODE; https://www.encodeproject.org/ENCBS177ANS/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: ChIP-seq from smooth muscle cell (ENCLB927NBD)

description:
https://www.encodeproject.org/experiments/ENCSR729MRJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR729MRJ
assay title: ChIP-seq
encode release date: 2016-04-27
lab: Bradley Bernstein, Broad
library encode accession: ENCLB927NBD
size range: 200-600

source_name: Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9

value: Control

value: smooth muscle cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS780PCJ at ENCODE; https://www.encodeproject.org/ENCBS780PCJ/


title: ChIP-seq from HepG2 (ENCLB769VIZ)

description:
https://www.encodeproject.org/experiments/ENCSR765MKZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR765MKZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB769VIZ

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-DRAP1 fusion protein, N-terminal FLAG-DRAP1 fusion protein

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS511OBG at ENCODE; https://www.encodeproject.org/ENCBS511OBG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB900LRO)

description:
https://www.encodeproject.org/experiments/ENCSR765MKZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR765MKZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB900LRO

value: ENCBS882UME at ENCODE; https://www.encodeproject.org/ENCBS882UME/