title: GBM cell 2515

description:
Single cell from Tumor
1001000241.E12


title: GBM cell 2500

status: Public on Nov 01 2017

type: SRA

city: Stanford

first: Spyros

last: Darmanis

state: California

address: Clark Center, E300

department: Bioengineering

country: USA

institute: Stanford University

description:
Single cell from Tumor
1001000241.G5

library_source: transcriptomic

data_processing:
Short read trimming: Prinseq to remove short reads (-min_len 30) trim the first 10 bp on the 5’-end (-trim_left 10), trim reads with low quality on the 3’-end (-trim_qual_right 25) and filter low complexity reads (-lc_method entropy \-lc_threshold 65).  We used FASTQC to determine overrepresented sequences and removed those using cutadapt (-e 0.15 –m 30). We then used Prinseq to remove orphan pairs less than 30bp in length followed by removal of nextera adapters using Trim Galore  (--stringency 1).
Read alignment: reads were aligned to the hg19 genome with STAR using the following options (-outFilterType BySJout \--outFilterMultimapNmax 20 \--alignSJoverhangMin 8 \--alignSJDBoverhangMin 1 \--outFilterMismatchNmax 999 \--outFilterMismatchNoverLmax 0.04 \--alignIntronMin 20 \--alignIntronMax 1000000 \--alignMatesGapMax 1000000 \--outSAMstrandField intronMotif ).
Per-gene read assignement: aligned reads were converted to counts for every gene using HTSeq (-m intersection-nonempty \-s no).
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files with raw read values for each sample

molecule: polyA RNA

organism: Homo sapiens

source_name: Brain

extract_protocol:
single-cell sorting in 96-well plates followed by cDNA preparation using Smart-seq2
Smart-Seq2 for preparation of cDNA followed by library preparation using Nextera XT. Nextera tagmentation according to the standard protocol for single cell RNA-seq following Smart-Seq2

tag: diagnosis

value: glioblastoma

tag: plate id

tag: well

tag: tissue

value: Tumor

tag: patient id

tag: tsne cluster

tag: cell type

value: Immune cell

tag: neoplastic

value: Regular

tag: selection

value: Oligodendrocytes(GC)


title: GBM cell 2514

description:
Single cell from Tumor
1001000241.H3


title: GBM cell 2512

description:
Single cell from Tumor
1001000241.E10


title: GBM cell 2493

description:
Single cell from Tumor
1001000241.D5


title: GBM cell 2496

description:
Single cell from Tumor
1001000241.D12


title: GBM cell 2509

description:
Single cell from Tumor
1001000241.H5


title: GBM cell 2494

description:
Single cell from Tumor
1001000241.D10


title: GBM cell 2491

description:
Single cell from Tumor
1001000241.B6


title: GBM cell 2489

description:
Single cell from Tumor
1001000241.D3


title: GBM cell 2488

description:
Single cell from Tumor
1001000241.A8


title: GBM cell 2487

description:
Single cell from Tumor
1001000241.B9

value: Oligodendrocyte


title: GBM cell 2486

description:
Single cell from Tumor
1001000241.B12


title: GBM cell 2484

description:
Single cell from Tumor
1001000241.C6


title: GBM cell 2482

description:
Single cell from Tumor
1001000241.E5


title: GBM cell 2483

description:
Single cell from Tumor
1001000241.A3


title: GBM cell 2481

description:
Single cell from Tumor
1001000241.C9


title: GBM cell 2480

description:
Single cell from Tumor
1001000241.A7


title: GBM cell 2479

description:
Single cell from Tumor
1001000241.B2


title: GBM cell 2477

description:
Single cell from Tumor
1001000241.E1


title: GBM cell 2478

description:
Single cell from Tumor
1001000241.A12


title: GBM cell 2476

description:
Single cell from Tumor
1001000241.B1


title: GBM cell 2475

description:
Single cell from Tumor
1001000241.C4


title: GBM cell 2492

description:
Single cell from Tumor
1001000241.A11


title: GBM cell 2472

description:
Single cell from Tumor
1001000241.D6


title: GBM cell 2474

description:
Single cell from Tumor
1001000241.A5


title: GBM cell 2490

description:
Single cell from Tumor
1001000241.E4


title: GBM cell 2470

description:
Single cell from Tumor
1001000241.C3


title: GBM cell 2471

description:
Single cell from Tumor
1001000241.D2


title: GBM cell 2473

description:
Single cell from Tumor
1001000241.A1


title: GBM cell 2465

description:
Single cell from Tumor
1001000241.C8


title: GBM cell 2469

description:
Single cell from Tumor
1001000241.A10


title: GBM cell 2468

description:
Single cell from Tumor
1001000241.B5


title: GBM cell 2467

description:
Single cell from Tumor
1001000241.D1


title: GBM cell 2485

description:
Single cell from Tumor
1001000241.E3


title: GBM cell 2466

description:
Single cell from Tumor
1001000241.C1


title: GBM cell 2462

description:
Single cell from Tumor
1001000241.E2


title: GBM cell 2464

description:
Single cell from Tumor
1001000241.C12


title: GBM cell 2460

description:
Single cell from Tumor
1001000241.A9


title: GBM cell 2461

description:
Single cell from Tumor
1001000241.A2


title: GBM cell 2463

description:
Single cell from Tumor
1001000241.B7


title: GBM cell 2458

description:
Single cell from Tumor
1001000241.C7


title: GBM cell 2457

description:
Single cell from Tumor
1001000241.C10


title: GBM cell 2456

description:
Single cell from Tumor
1001000241.D9


title: GBM cell 2454

description:
Single cell from Tumor
1001000241.C5


title: GBM cell 2455

description:
Single cell from Tumor
1001000241.B11


title: GBM cell 2453

description:
Single cell from Tumor
1001000241.A4


title: GBM cell 2450

description:
Single cell from Tumor
1001000241.B8


title: GBM cell 2451

description:
Single cell from Tumor
1001000241.D4


title: GBM cell 2452

description:
Single cell from Tumor
1001000241.D7


title: GBM cell 2449

description:
Single cell from Tumor
1001000241.B3


title: GBM cell 2447

description:
Single cell from Periphery
1001000240.E4

value: Periphery


title: GBM cell 2445

description:
Single cell from Periphery
1001000240.A3


title: GBM cell 2448

description:
Single cell from Tumor
1001000241.F1


title: GBM cell 2444

description:
Single cell from Periphery
1001000240.A12


title: GBM cell 2446

description:
Single cell from Periphery
1001000240.C8


title: GBM cell 2442

description:
Single cell from Periphery
1001000240.A6


title: GBM cell 2441

description:
Single cell from Periphery
1001000240.F1


title: GBM cell 2440

description:
Single cell from Periphery
1001000240.G10


title: GBM cell 2443

description:
Single cell from Periphery
1001000240.G12


title: GBM cell 2439

description:
Single cell from Periphery
1001000240.D5


title: GBM cell 2437

description:
Single cell from Periphery
1001000240.B9


title: GBM cell 2435

description:
Single cell from Periphery
1001000240.G6


title: GBM cell 2436

description:
Single cell from Periphery
1001000240.C1


title: GBM cell 2434

description:
Single cell from Periphery
1001000240.A5


title: GBM cell 2438

description:
Single cell from Periphery
1001000240.F8


title: GBM cell 2459

description:
Single cell from Tumor
1001000241.A6


title: GBM cell 2431

description:
Single cell from Periphery
1001000240.F2


title: GBM cell 2430

description:
Single cell from Periphery
1001000240.D3


title: GBM cell 2433

description:
Single cell from Periphery
1001000240.E2


title: GBM cell 2428

description:
Single cell from Periphery
1001000240.A8


title: GBM cell 2429

description:
Single cell from Periphery
1001000240.G1


title: GBM cell 2425

description:
Single cell from Periphery
1001000240.H2


title: GBM cell 2426

description:
Single cell from Periphery
1001000240.H6


title: GBM cell 2427

description:
Single cell from Periphery
1001000240.A11


title: GBM cell 2423

description:
Single cell from Periphery
1001000240.C12


title: GBM cell 2422

description:
Single cell from Periphery
1001000240.H11


title: GBM cell 2424

description:
Single cell from Periphery
1001000240.B5


title: GBM cell 2421

description:
Single cell from Periphery
1001000240.C2


title: GBM cell 2420

description:
Single cell from Periphery
1001000240.B7


title: GBM cell 2419

description:
Single cell from Periphery
1001000240.H1


title: GBM cell 2418

description:
Single cell from Periphery
1001000240.D9


title: GBM cell 2416

description:
Single cell from Periphery
1001000240.B10


title: GBM cell 2413

description:
Single cell from Periphery
1001000240.H8


title: GBM cell 2417

description:
Single cell from Periphery
1001000240.F4


title: GBM cell 2412

description:
Single cell from Periphery
1001000240.B3


title: GBM cell 2415

description:
Single cell from Periphery
1001000240.G8


title: GBM cell 2414

description:
Single cell from Periphery
1001000240.H4


title: GBM cell 2411

description:
Single cell from Periphery
1001000240.E7


title: GBM cell 2432

description:
Single cell from Periphery
1001000240.E8


title: GBM cell 2407

description:
Single cell from Periphery
1001000240.D4


title: GBM cell 2408

description:
Single cell from Periphery
1001000240.C4


title: GBM cell 2404

description:
Single cell from Periphery
1001000240.C10


title: GBM cell 2410

description:
Single cell from Periphery
1001000240.C9


title: GBM cell 2409

description:
Single cell from Periphery
1001000240.A1


title: GBM cell 2402

description:
Single cell from Periphery
1001000240.D12


title: GBM cell 2403

description:
Single cell from Periphery
1001000240.F7


title: GBM cell 2401

description:
Single cell from Periphery
1001000240.A9


title: GBM cell 2400

description:
Single cell from Periphery
1001000240.D2


title: GBM cell 2399

description:
Single cell from Periphery
1001000240.G4


title: GBM cell 2398

description:
Single cell from Periphery
1001000240.G11


title: GBM cell 2395

description:
Single cell from Periphery
1001000240.B12


title: GBM cell 2396

description:
Single cell from Periphery
1001000240.F10


title: GBM cell 2393

description:
Single cell from Periphery
1001000240.F9


title: GBM cell 2392

description:
Single cell from Periphery
1001000240.A10


title: GBM cell 2391

description:
Single cell from Periphery
1001000240.G7


title: GBM cell 2387

description:
Single cell from Periphery
1001000240.B4


title: GBM cell 2389

description:
Single cell from Periphery
1001000240.E9


title: GBM cell 2388

description:
Single cell from Periphery
1001000240.B6


title: GBM cell 2384

description:
Single cell from Periphery
1001000240.F12


title: GBM cell 2383

description:
Single cell from Periphery
1001000240.D6


title: GBM cell 2385

description:
Single cell from Periphery
1001000240.F3


title: GBM cell 2386

description:
Single cell from Periphery
1001000240.A2


title: GBM cell 2390

description:
Single cell from Periphery
1001000240.C3


title: GBM cell 2381

description:
Single cell from Periphery
1001000240.D1


title: GBM cell 2378

description:
Single cell from Periphery
1001000240.H3


title: GBM cell 2380

description:
Single cell from Periphery
1001000240.G3


title: GBM cell 2377

description:
Single cell from Periphery
1001000240.H7


title: GBM cell 2373

description:
Single cell from Periphery
1001000240.E12


title: GBM cell 2375

description:
Single cell from Periphery
1001000240.C5


title: GBM cell 2397

description:
Single cell from Periphery
1001000240.B8


title: GBM cell 2376

description:
Single cell from Periphery
1001000240.H10


title: GBM cell 2374

description:
Single cell from Periphery
1001000240.B2


title: GBM cell 2371

description:
Single cell from Periphery
1001000240.E6


title: GBM cell 2379

description:
Single cell from Periphery
1001000240.B11


title: GBM cell 2394

description:
Single cell from Periphery
1001000240.D8


title: GBM cell 2382

description:
Single cell from Periphery
1001000240.E1


title: GBM cell 2370

description:
Single cell from Periphery
1001000240.F5


title: GBM cell 2372

description:
Single cell from Periphery
1001000240.C6


title: GBM cell 2367

description:
Single cell from Periphery
1001000240.A7


title: GBM cell 2365

description:
Single cell from Periphery
1001000240.H9


title: GBM cell 2369

description:
Single cell from Periphery
1001000240.G5


title: GBM cell 2366

description:
Single cell from Periphery
1001000240.D11


title: GBM cell 2363

description:
Single cell from Periphery
1001000240.F6


title: GBM cell 2364

description:
Single cell from Periphery
1001000240.H5


title: GBM cell 2362

description:
Single cell from Periphery
1001000240.B1


title: GBM cell 2361

description:
Single cell from Periphery
1001000239.C12


title: GBM cell 2360

description:
Single cell from Periphery
1001000239.B3


title: GBM cell 2358

description:
Single cell from Periphery
1001000239.G12


title: GBM cell 2359

description:
Single cell from Periphery
1001000239.C5


title: GBM cell 2357

description:
Single cell from Periphery
1001000239.H4


title: GBM cell 2356

description:
Single cell from Periphery
1001000239.G10


title: GBM cell 2355

description:
Single cell from Periphery
1001000239.E5


title: GBM cell 2350

description:
Single cell from Periphery
1001000239.E11


title: GBM cell 2349

description:
Single cell from Periphery
1001000239.C8


title: GBM cell 2351

description:
Single cell from Periphery
1001000239.A1


title: GBM cell 2352

description:
Single cell from Periphery
1001000239.F5


title: GBM cell 2347

description:
Single cell from Periphery
1001000239.E8


title: GBM cell 2353

description:
Single cell from Periphery
1001000239.A12


title: GBM cell 2368

description:
Single cell from Periphery
1001000240.C11


title: GBM cell 2354

description:
Single cell from Periphery
1001000239.G2


title: GBM cell 2342

description:
Single cell from Periphery
1001000239.H3


title: GBM cell 2344

description:
Single cell from Periphery
1001000239.C7


title: GBM cell 2345

description:
Single cell from Periphery
1001000239.B11


title: GBM cell 2348

description:
Single cell from Periphery
1001000239.D7


title: GBM cell 2341

description:
Single cell from Periphery
1001000239.D10


title: GBM cell 2340

description:
Single cell from Periphery
1001000239.C10


title: GBM cell 2339

description:
Single cell from Periphery
1001000239.A10


title: GBM cell 2337

description:
Single cell from Periphery
1001000239.F7


title: GBM cell 2334

description:
Single cell from Periphery
1001000239.B8


title: GBM cell 2335

description:
Single cell from Periphery
1001000239.B1


title: GBM cell 2332

description:
Single cell from Periphery
1001000239.D3


title: GBM cell 2333

description:
Single cell from Periphery
1001000239.A5


title: GBM cell 2346

description:
Single cell from Periphery
1001000239.E1


title: GBM cell 2331

description:
Single cell from Periphery
1001000239.E7


title: GBM cell 2328

description:
Single cell from Periphery
1001000239.G6


title: GBM cell 2329

description:
Single cell from Periphery
1001000239.C6


title: GBM cell 2343

description:
Single cell from Periphery
1001000239.H11


title: GBM cell 2325

description:
Single cell from Periphery
1001000239.A3


title: GBM cell 2327

description:
Single cell from Periphery
1001000239.G9


title: GBM cell 2330

description:
Single cell from Periphery
1001000239.D8


title: GBM cell 2326

description:
Single cell from Periphery
1001000239.C3


title: GBM cell 2324

description:
Single cell from Periphery
1001000239.D1


title: GBM cell 2320

description:
Single cell from Periphery
1001000239.F2


title: GBM cell 2322

description:
Single cell from Periphery
1001000239.E12


title: GBM cell 2316

description:
Single cell from Periphery
1001000239.G3


title: GBM cell 2323

description:
Single cell from Periphery
1001000239.B6


title: GBM cell 2314

description:
Single cell from Periphery
1001000239.H5


title: GBM cell 2321

description:
Single cell from Periphery
1001000239.F9


title: GBM cell 2313

description:
Single cell from Periphery
1001000239.F4


title: GBM cell 2338

description:
Single cell from Periphery
1001000239.D5


title: GBM cell 2318

description:
Single cell from Periphery
1001000239.C1


title: GBM cell 2315

description:
Single cell from Periphery
1001000239.E4


title: GBM cell 2317

description:
Single cell from Periphery
1001000239.A11


title: GBM cell 2319

description:
Single cell from Periphery
1001000239.H7


title: GBM cell 2312

description:
Single cell from Periphery
1001000239.H2


title: GBM cell 2336

description:
Single cell from Periphery
1001000239.H8


title: GBM cell 2311

description:
Single cell from Periphery
1001000239.A9


title: GBM cell 2307

description:
Single cell from Periphery
1001000239.A2


title: GBM cell 2305

description:
Single cell from Periphery
1001000239.B2


title: GBM cell 2304

description:
Single cell from Periphery
1001000239.D11


title: GBM cell 2303

description:
Single cell from Periphery
1001000239.C11


title: GBM cell 2301

description:
Single cell from Periphery
1001000239.G1


title: GBM cell 2299

description:
Single cell from Periphery
1001000239.A7


title: GBM cell 2300

description:
Single cell from Periphery
1001000239.H9


title: GBM cell 2298

description:
Single cell from Periphery
1001000239.F6


title: GBM cell 2297

description:
Single cell from Periphery
1001000239.E2


title: GBM cell 2294

description:
Single cell from Periphery
1001000239.E9


title: GBM cell 2295

description:
Single cell from Periphery
1001000239.B10


title: GBM cell 2293

description:
Single cell from Periphery
1001000239.D2


title: GBM cell 2292

description:
Single cell from Periphery
1001000239.H10


title: GBM cell 2291

description:
Single cell from Periphery
1001000239.E10


title: GBM cell 2310

description:
Single cell from Periphery
1001000239.B4


title: GBM cell 2309

description:
Single cell from Periphery
1001000239.D6


title: GBM cell 2308

description:
Single cell from Periphery
1001000239.C2

value: Vascular


title: GBM cell 2289

description:
Single cell from Periphery
1001000239.G7


title: GBM cell 2288

description:
Single cell from Periphery
1001000239.D12


title: GBM cell 2287

description:
Single cell from Periphery
1001000239.B9


title: GBM cell 2284

description:
Single cell from Periphery
1001000239.D9


title: GBM cell 2306

description:
Single cell from Periphery
1001000239.F12


title: GBM cell 2283

description:
Single cell from Periphery
1001000239.F1


title: GBM cell 2282

description:
Single cell from Periphery
1001000239.F8


title: GBM cell 2302

description:
Single cell from Periphery
1001000239.G11


title: GBM cell 2281

description:
Single cell from Periphery
1001000239.C9


title: GBM cell 2280

description:
Single cell from Periphery
1001000239.G5


title: GBM cell 2278

description:
Single cell from Periphery
1001000239.B5


title: GBM cell 2276

description:
Single cell from Periphery
1001000238.C7


title: GBM cell 2296

description:
Single cell from Periphery
1001000239.C4


title: GBM cell 2277

description:
Single cell from Periphery
1001000239.E6


title: GBM cell 2279

description:
Single cell from Periphery
1001000239.A4


title: GBM cell 2275

description:
Single cell from Periphery
1001000238.E2


title: GBM cell 2274

description:
Single cell from Periphery
1001000238.A2


title: GBM cell 2286

description:
Single cell from Periphery
1001000239.G8


title: GBM cell 2272

description:
Single cell from Periphery
1001000238.B3


title: GBM cell 2268

description:
Single cell from Periphery
1001000238.G12


title: GBM cell 2271

description:
Single cell from Periphery
1001000238.E4


title: GBM cell 2285

description:
Single cell from Periphery
1001000239.B7


title: GBM cell 2266

description:
Single cell from Periphery
1001000238.F6


title: GBM cell 2263

description:
Single cell from Periphery
1001000238.D10


title: GBM cell 2265

description:
Single cell from Periphery
1001000238.H2


title: GBM cell 2264

description:
Single cell from Periphery
1001000238.A9


title: GBM cell 2267

description:
Single cell from Periphery
1001000238.G8


title: GBM cell 2261

description:
Single cell from Periphery
1001000238.B8


title: GBM cell 2262

description:
Single cell from Periphery
1001000238.D12


title: GBM cell 2259

description:
Single cell from Periphery
1001000238.D6


title: GBM cell 2260

description:
Single cell from Periphery
1001000238.C5


title: GBM cell 2258

description:
Single cell from Periphery
1001000238.F4


title: GBM cell 2256

description:
Single cell from Periphery
1001000238.A7


title: GBM cell 2257

description:
Single cell from Periphery
1001000238.H9


title: GBM cell 2273

description:
Single cell from Periphery
1001000238.A12


title: GBM cell 2252

description:
Single cell from Periphery
1001000238.D4


title: GBM cell 2253

description:
Single cell from Periphery
1001000238.B7


title: GBM cell 2251

description:
Single cell from Periphery
1001000238.H11


title: GBM cell 2254

description:
Single cell from Periphery
1001000238.G3


title: GBM cell 2269

description:
Single cell from Periphery
1001000238.G4


title: GBM cell 2255

description:
Single cell from Periphery
1001000238.F11


title: GBM cell 2249

description:
Single cell from Periphery
1001000238.G7


title: GBM cell 2250

description:
Single cell from Periphery
1001000238.F2


title: GBM cell 2248

description:
Single cell from Periphery
1001000238.H7


title: GBM cell 2245

description:
Single cell from Periphery
1001000238.C11


title: GBM cell 2247

description:
Single cell from Periphery
1001000238.G10


title: GBM cell 2246

description:
Single cell from Periphery
1001000238.G11


title: GBM cell 2240

description:
Single cell from Periphery
1001000238.E5


title: GBM cell 2243

description:
Single cell from Periphery
1001000238.B12


title: GBM cell 2244

description:
Single cell from Periphery
1001000238.H1


title: GBM cell 2241

description:
Single cell from Periphery
1001000238.E6


title: GBM cell 2242

description:
Single cell from Periphery
1001000238.B5


title: GBM cell 2239

description:
Single cell from Periphery
1001000238.B2


title: GBM cell 2238

description:
Single cell from Periphery
1001000238.D2


title: GBM cell 2290

description:
Single cell from Periphery
1001000239.F10


title: GBM cell 2237

description:
Single cell from Periphery
1001000238.B10


title: GBM cell 2270

description:
Single cell from Periphery
1001000238.D8


title: GBM cell 2236

description:
Single cell from Periphery
1001000238.E3


title: GBM cell 2235

description:
Single cell from Periphery
1001000238.C12


title: GBM cell 2234

description:
Single cell from Periphery
1001000238.B4


title: GBM cell 2233

description:
Single cell from Periphery
1001000238.C6


title: GBM cell 2232

description:
Single cell from Periphery
1001000238.G5


title: GBM cell 2230

description:
Single cell from Periphery
1001000238.C8


title: GBM cell 2227

description:
Single cell from Periphery
1001000238.C3


title: GBM cell 2231

description:
Single cell from Periphery
1001000238.C10


title: GBM cell 2225

description:
Single cell from Periphery
1001000238.E10


title: GBM cell 2228

description:
Single cell from Periphery
1001000238.F9


title: GBM cell 2229

description:
Single cell from Periphery
1001000238.A11


title: GBM cell 2226

description:
Single cell from Periphery
1001000238.A5


title: GBM cell 2223

description:
Single cell from Periphery
1001000238.B9


title: GBM cell 2222

description:
Single cell from Periphery
1001000238.H10


title: GBM cell 2224

description:
Single cell from Periphery
1001000238.D9


title: GBM cell 2217

description:
Single cell from Periphery
1001000238.H8


title: GBM cell 2219

description:
Single cell from Periphery
1001000238.A3


title: GBM cell 2215

description:
Single cell from Periphery
1001000238.G9


title: GBM cell 2214

description:
Single cell from Periphery
1001000238.F5


title: GBM cell 2216

description:
Single cell from Periphery
1001000238.A6


title: GBM cell 2212

description:
Single cell from Periphery
1001000238.E9


title: GBM cell 2213

description:
Single cell from Periphery
1001000238.F10


title: GBM cell 2211

description:
Single cell from Periphery
1001000238.B6


title: GBM cell 2209

description:
Single cell from Periphery
1001000238.E7


title: GBM cell 2210

description:
Single cell from Periphery
1001000238.D5


title: GBM cell 2208

description:
Single cell from Periphery
1001000238.B11


title: GBM cell 2206

description:
Single cell from Periphery
1001000238.F8


title: GBM cell 2205

description:
Single cell from Periphery
1001000238.A4


title: GBM cell 2204

description:
Single cell from Periphery
1001000238.F3


title: GBM cell 2202

description:
Single cell from Tumor
1001000237.E9


title: GBM cell 2200

description:
Single cell from Tumor
1001000237.E11


title: GBM cell 2201

description:
Single cell from Tumor
1001000237.H10


title: GBM cell 2221

description:
Single cell from Periphery
1001000238.E1


title: GBM cell 2198

description:
Single cell from Tumor
1001000237.E7


title: GBM cell 2195

description:
Single cell from Tumor
1001000237.H6


title: GBM cell 2218

description:
Single cell from Periphery
1001000238.D7


title: GBM cell 2220

description:
Single cell from Periphery
1001000238.F7


title: GBM cell 2194

description:
Single cell from Tumor
1001000237.C7


title: GBM cell 2199

description:
Single cell from Tumor
1001000237.F2


title: GBM cell 2197

description:
Single cell from Tumor
1001000237.A1


title: GBM cell 2192

description:
Single cell from Tumor
1001000237.D11


title: GBM cell 2193

description:
Single cell from Tumor
1001000237.A8


title: GBM cell 2189

description:
Single cell from Tumor
1001000237.H9


title: GBM cell 2190

description:
Single cell from Tumor
1001000237.H4


title: GBM cell 823

description:
Single cell from Tumor
1001000183.C5

value: Neoplastic

value: Astrocytes(HEPACAM)


title: GBM cell 824

description:
Single cell from Tumor
1001000183.E9


title: GBM cell 2207

description:
Single cell from Periphery
1001000238.G6


title: GBM cell 822

description:
Single cell from Tumor
1001000183.D3


title: GBM cell 820

description:
Single cell from Tumor
1001000183.F10


title: GBM cell 821

description:
Single cell from Tumor
1001000183.F5


title: GBM cell 818

description:
Single cell from Tumor
1001000183.A10


title: GBM cell 819

description:
Single cell from Tumor
1001000183.H10


title: GBM cell 816

description:
Single cell from Tumor
1001000183.A12


title: GBM cell 2203

description:
Single cell from Periphery
1001000238.F12


title: GBM cell 2196

description:
Single cell from Tumor
1001000237.B7


title: GBM cell 812

description:
Single cell from Tumor
1001000183.D11


title: GBM cell 814

description:
Single cell from Tumor
1001000183.B11


title: GBM cell 811

description:
Single cell from Tumor
1001000183.C4


title: GBM cell 813

description:
Single cell from Tumor
1001000183.C9


title: GBM cell 809

description:
Single cell from Tumor
1001000183.E4


title: GBM cell 808

description:
Single cell from Tumor
1001000183.E12


title: GBM cell 2191

description:
Single cell from Tumor
1001000237.C11


title: GBM cell 810

description:
Single cell from Tumor
1001000183.C2


title: GBM cell 806

description:
Single cell from Tumor
1001000183.G1


title: GBM cell 805

description:
Single cell from Tumor
1001000183.E6


title: GBM cell 803

description:
Single cell from Tumor
1001000183.D8


title: GBM cell 802

description:
Single cell from Tumor
1001000183.G8


title: GBM cell 801

description:
Single cell from Tumor
1001000183.H4


title: GBM cell 799

description:
Single cell from Tumor
1001000183.H9


title: GBM cell 800

description:
Single cell from Tumor
1001000183.H2


title: GBM cell 797

description:
Single cell from Tumor
1001000183.B4


title: GBM cell 798

description:
Single cell from Tumor
1001000183.B9


title: GBM cell 796

description:
Single cell from Tumor
1001000183.C8


title: GBM cell 795

description:
Single cell from Tumor
1001000183.B12


title: GBM cell 793

description:
Single cell from Tumor
1001000183.H11


title: GBM cell 794

description:
Single cell from Tumor
1001000183.A7


title: GBM cell 815

description:
Single cell from Tumor
1001000183.D2


title: GBM cell 791

description:
Single cell from Tumor
1001000183.E8


title: GBM cell 790

description:
Single cell from Tumor
1001000183.G2

value: OPC


title: GBM cell 786

description:
Single cell from Tumor
1001000183.F6


title: GBM cell 789

description:
Single cell from Tumor
1001000183.G11


title: GBM cell 788

description:
Single cell from Tumor
1001000183.F11


title: GBM cell 787

description:
Single cell from Tumor
1001000183.D4


title: GBM cell 785

description:
Single cell from Tumor
1001000183.G10


title: GBM cell 807

description:
Single cell from Tumor
1001000183.B6


title: GBM cell 804

description:
Single cell from Tumor
1001000183.A5


title: GBM cell 783

description:
Single cell from Tumor
1001000183.B8


title: GBM cell 784

description:
Single cell from Tumor
1001000183.A9


title: GBM cell 780

description:
Single cell from Tumor
1001000183.A3


title: GBM cell 779

description:
Single cell from Tumor
1001000182.A8


title: GBM cell 781

description:
Single cell from Tumor
1001000183.C6


title: GBM cell 782

description:
Single cell from Tumor
1001000183.F4


title: GBM cell 777

description:
Single cell from Tumor
1001000182.C1


title: GBM cell 778

description:
Single cell from Tumor
1001000182.G6


title: GBM cell 775

description:
Single cell from Tumor
1001000182.D3


title: GBM cell 776

description:
Single cell from Tumor
1001000182.H6


title: GBM cell 774

description:
Single cell from Tumor
1001000182.E12


title: GBM cell 772

description:
Single cell from Tumor
1001000182.C7


title: GBM cell 792

description:
Single cell from Tumor
1001000183.C11


title: GBM cell 770

description:
Single cell from Tumor
1001000182.G11


title: GBM cell 769

description:
Single cell from Tumor
1001000182.A6


title: GBM cell 768

description:
Single cell from Tumor
1001000182.B6


title: GBM cell 771

description:
Single cell from Tumor
1001000182.H11


title: GBM cell 767

description:
Single cell from Tumor
1001000182.E9


title: GBM cell 765

description:
Single cell from Tumor
1001000182.H4


title: GBM cell 766

description:
Single cell from Tumor
1001000182.E1


title: GBM cell 762

description:
Single cell from Tumor
1001000182.D12


title: GBM cell 764

description:
Single cell from Tumor
1001000182.C5


title: GBM cell 760

description:
Single cell from Tumor
1001000182.F11


title: GBM cell 817

description:
Single cell from Tumor
1001000183.A8


title: GBM cell 763

description:
Single cell from Tumor
1001000182.H1


title: GBM cell 759

description:
Single cell from Tumor
1001000182.G2


title: GBM cell 758

description:
Single cell from Tumor
1001000182.D8


title: GBM cell 757

description:
Single cell from Tumor
1001000182.A4


title: GBM cell 754

description:
Single cell from Tumor
1001000182.F10


title: GBM cell 752

description:
Single cell from Tumor
1001000182.F5


title: GBM cell 755

description:
Single cell from Tumor
1001000182.C11


title: GBM cell 761

description:
Single cell from Tumor
1001000182.E10


title: GBM cell 756

description:
Single cell from Tumor
1001000182.H9


title: GBM cell 753

description:
Single cell from Tumor
1001000182.B5


title: GBM cell 749

description:
Single cell from Tumor
1001000182.A2


title: GBM cell 748

description:
Single cell from Tumor
1001000182.G3


title: GBM cell 746

description:
Single cell from Tumor
1001000182.D2


title: GBM cell 745

description:
Single cell from Tumor
1001000182.C9


title: GBM cell 750

description:
Single cell from Tumor
1001000182.C4


title: GBM cell 773

description:
Single cell from Tumor
1001000182.G7


title: GBM cell 751

description:
Single cell from Tumor
1001000182.E7


title: GBM cell 744

description:
Single cell from Tumor
1001000182.G5


title: GBM cell 743

description:
Single cell from Tumor
1001000182.B11


title: GBM cell 747

description:
Single cell from Tumor
1001000182.F2


title: GBM cell 741

description:
Single cell from Tumor
1001000182.B3


title: GBM cell 742

description:
Single cell from Tumor
1001000182.F3


title: GBM cell 740

description:
Single cell from Tumor
1001000182.E5


title: GBM cell 739

description:
Single cell from Tumor
1001000182.A11


title: GBM cell 738

description:
Single cell from Tumor
1001000182.E4


title: GBM cell 737

description:
Single cell from Tumor
1001000182.F1


title: GBM cell 735

description:
Single cell from Tumor
1001000182.C8


title: GBM cell 732

description:
Single cell from Tumor
1001000182.A9


title: GBM cell 733

description:
Single cell from Tumor
1001000182.B1


title: GBM cell 736

description:
Single cell from Tumor
1001000182.G12


title: GBM cell 730

description:
Single cell from Tumor
1001000182.H3


title: GBM cell 731

description:
Single cell from Tumor
1001000182.E2


title: GBM cell 726

description:
Single cell from Tumor
1001000182.F12


title: GBM cell 728

description:
Single cell from Tumor
1001000182.H2


title: GBM cell 727

description:
Single cell from Tumor
1001000182.G1


title: GBM cell 723

description:
Single cell from Tumor
1001000182.D11


title: GBM cell 724

description:
Single cell from Tumor
1001000182.G8


title: GBM cell 721

description:
Single cell from Tumor
1001000182.D9


title: GBM cell 725

description:
Single cell from Tumor
1001000182.D7


title: GBM cell 720

description:
Single cell from Tumor
1001000182.C10


title: GBM cell 722

description:
Single cell from Tumor
1001000182.A7


title: GBM cell 717

description:
Single cell from Tumor
1001000182.B4


title: GBM cell 719

description:
Single cell from Tumor
1001000182.B12


title: GBM cell 718

description:
Single cell from Tumor
1001000182.F6


title: GBM cell 714

description:
Single cell from Tumor
1001000182.D10


title: GBM cell 713

description:
Single cell from Tumor
1001000182.C12


title: GBM cell 711

description:
Single cell from Tumor
1001000182.D1


title: GBM cell 710

description:
Single cell from Tumor
1001000182.C3


title: GBM cell 734

description:
Single cell from Tumor
1001000182.B8


title: GBM cell 712

description:
Single cell from Tumor
1001000182.G10


title: GBM cell 709

description:
Single cell from Tumor
1001000182.E6


title: GBM cell 729

description:
Single cell from Tumor
1001000182.B10


title: GBM cell 715

description:
Single cell from Tumor
1001000182.A5


title: GBM cell 716

description:
Single cell from Tumor
1001000182.E8


title: GBM cell 704

description:
Single cell from Periphery
1001000181.D9


title: GBM cell 706

description:
Single cell from Tumor
1001000182.F4


title: GBM cell 705

description:
Single cell from Tumor
1001000182.A3


title: GBM cell 703

description:
Single cell from Periphery
1001000181.C7


title: GBM cell 707

description:
Single cell from Tumor
1001000182.A10


title: GBM cell 702

description:
Single cell from Periphery
1001000181.D11


title: GBM cell 701

description:
Single cell from Periphery
1001000181.A2


title: GBM cell 698

description:
Single cell from Periphery
1001000181.D1

value: Astocyte


title: GBM cell 699

description:
Single cell from Periphery
1001000181.E4


title: GBM cell 700

description:
Single cell from Periphery
1001000181.A9


title: GBM cell 696

description:
Single cell from Periphery
1001000181.B10


title: GBM cell 694

description:
Single cell from Periphery
1001000181.F2


title: GBM cell 695

description:
Single cell from Periphery
1001000181.F9


title: GBM cell 708

description:
Single cell from Tumor
1001000182.G4


title: GBM cell 687

description:
Single cell from Periphery
1001000181.D4


title: GBM cell 693

description:
Single cell from Periphery
1001000181.A7


title: GBM cell 692

description:
Single cell from Periphery
1001000181.D3


title: GBM cell 691

description:
Single cell from Periphery
1001000181.B6


title: GBM cell 690

description:
Single cell from Periphery
1001000181.F11


title: GBM cell 688

description:
Single cell from Periphery
1001000181.B12


title: GBM cell 689

description:
Single cell from Periphery
1001000181.G8


title: GBM cell 681

description:
Single cell from Periphery
1001000181.F6


title: GBM cell 679

description:
Single cell from Periphery
1001000181.B9


title: GBM cell 683

description:
Single cell from Periphery
1001000181.E12


title: GBM cell 684

description:
Single cell from Periphery
1001000181.A6


title: GBM cell 674

description:
Single cell from Periphery
1001000181.C11


title: GBM cell 678

description:
Single cell from Periphery
1001000181.B2


title: GBM cell 672

description:
Single cell from Periphery
1001000181.E5


title: GBM cell 671

description:
Single cell from Periphery
1001000181.F4


title: GBM cell 673

description:
Single cell from Periphery
1001000181.E10


title: GBM cell 686

description:
Single cell from Periphery
1001000181.B4


title: GBM cell 675

description:
Single cell from Periphery
1001000181.C6


title: GBM cell 685

description:
Single cell from Periphery
1001000181.G6


title: GBM cell 682

description:
Single cell from Periphery
1001000181.A11


title: GBM cell 676

description:
Single cell from Periphery
1001000181.A4


title: GBM cell 677

description:
Single cell from Periphery
1001000181.D7


title: GBM cell 697

description:
Single cell from Periphery
1001000181.C10


title: GBM cell 668

description:
Single cell from Periphery
1001000181.B7


title: GBM cell 670

description:
Single cell from Periphery
1001000181.F3


title: GBM cell 669

description:
Single cell from Periphery
1001000181.G7


title: GBM cell 680

description:
Single cell from Periphery
1001000181.C4


title: GBM cell 667

description:
Single cell from Periphery
1001000181.F10


title: GBM cell 665

description:
Single cell from Periphery
1001000181.E11


title: GBM cell 662

description:
Single cell from Periphery
1001000181.E3


title: GBM cell 664

description:
Single cell from Periphery
1001000181.D2


title: GBM cell 663

description:
Single cell from Periphery
1001000181.A10


title: GBM cell 666

description:
Single cell from Periphery
1001000181.C8


title: GBM cell 661

description:
Single cell from Periphery
1001000181.F12


title: GBM cell 657

description:
Single cell from Periphery
1001000181.B5


title: GBM cell 656

description:
Single cell from Periphery
1001000181.G3


title: GBM cell 659

description:
Single cell from Periphery
1001000181.F8


title: GBM cell 653

description:
Single cell from Periphery
1001000181.C3


title: GBM cell 654

description:
Single cell from Periphery
1001000181.F7


title: GBM cell 650

description:
Single cell from Periphery
1001000181.A5


title: GBM cell 645

description:
Single cell from Periphery
1001000181.E6


title: GBM cell 649

description:
Single cell from Periphery
1001000181.C5


title: GBM cell 646

description:
Single cell from Periphery
1001000181.B1


title: GBM cell 652

description:
Single cell from Periphery
1001000181.D5


title: GBM cell 644

description:
Single cell from Periphery
1001000181.A3


title: GBM cell 658

description:
Single cell from Periphery
1001000181.D10


title: GBM cell 642

description:
Single cell from Periphery
1001000180.F9


title: GBM cell 641

description:
Single cell from Periphery
1001000180.A9


title: GBM cell 648

description:
Single cell from Periphery
1001000181.C12


title: GBM cell 660

description:
Single cell from Periphery
1001000181.F1


title: GBM cell 640

description:
Single cell from Periphery
1001000180.A2


title: GBM cell 655

description:
Single cell from Periphery
1001000181.E1


title: GBM cell 639

description:
Single cell from Periphery
1001000180.G1


title: GBM cell 635

description:
Single cell from Periphery
1001000180.F12


title: GBM cell 636

description:
Single cell from Periphery
1001000180.E6


title: GBM cell 637

description:
Single cell from Periphery
1001000180.E5


title: GBM cell 647

description:
Single cell from Periphery
1001000181.D8


title: GBM cell 651

description:
Single cell from Periphery
1001000181.D12


title: GBM cell 643

description:
Single cell from Periphery
1001000180.H6


title: GBM cell 633

description:
Single cell from Periphery
1001000180.A4


title: GBM cell 628

description:
Single cell from Periphery
1001000180.H10


title: GBM cell 630

description:
Single cell from Periphery
1001000180.C5


title: GBM cell 632

description:
Single cell from Periphery
1001000180.D3


title: GBM cell 625

description:
Single cell from Periphery
1001000180.D1


title: GBM cell 626

description:
Single cell from Periphery
1001000180.B3


title: GBM cell 627

description:
Single cell from Periphery
1001000180.H5


title: GBM cell 624

description:
Single cell from Periphery
1001000180.D11


title: GBM cell 631

description:
Single cell from Periphery
1001000180.C8


title: GBM cell 623

description:
Single cell from Periphery
1001000180.B1


title: GBM cell 622

description:
Single cell from Periphery
1001000180.H3


title: GBM cell 619

description:
Single cell from Periphery
1001000180.F4


title: GBM cell 621

description:
Single cell from Periphery
1001000180.A12


title: GBM cell 618

description:
Single cell from Periphery
1001000180.F7


title: GBM cell 616

description:
Single cell from Periphery
1001000180.C3


title: GBM cell 638

description:
Single cell from Periphery
1001000180.F10


title: GBM cell 617

description:
Single cell from Periphery
1001000180.E1


title: GBM cell 634

description:
Single cell from Periphery
1001000180.G4


title: GBM cell 614

description:
Single cell from Periphery
1001000180.E2


title: GBM cell 629

description:
Single cell from Periphery
1001000180.G2


title: GBM cell 615

description:
Single cell from Periphery
1001000180.C12


title: GBM cell 611

description:
Single cell from Periphery
1001000180.B2


title: GBM cell 612

description:
Single cell from Periphery
1001000180.G11


title: GBM cell 620

description:
Single cell from Periphery
1001000180.E12


title: GBM cell 610

description:
Single cell from Periphery
1001000180.H4


title: GBM cell 609

description:
Single cell from Periphery
1001000180.H9


title: GBM cell 608

description:
Single cell from Periphery
1001000180.A10


title: GBM cell 607

description:
Single cell from Periphery
1001000180.E4


title: GBM cell 606

description:
Single cell from Periphery
1001000180.D8


title: GBM cell 601

description:
Single cell from Periphery
1001000180.F2


title: GBM cell 600

description:
Single cell from Periphery
1001000180.D2


title: GBM cell 602

description:
Single cell from Periphery
1001000180.F1


title: GBM cell 596

description:
Single cell from Periphery
1001000180.G12


title: GBM cell 599

description:
Single cell from Periphery
1001000180.A5


title: GBM cell 604

description:
Single cell from Periphery
1001000180.B7


title: GBM cell 605

description:
Single cell from Periphery
1001000180.A8


title: GBM cell 598

description:
Single cell from Periphery
1001000180.E10


title: GBM cell 597

description:
Single cell from Periphery
1001000180.H1


title: GBM cell 593

description:
Single cell from Periphery
1001000180.A11


title: GBM cell 592

description:
Single cell from Periphery
1001000180.F5


title: GBM cell 595

description:
Single cell from Periphery
1001000180.C7


title: GBM cell 590

description:
Single cell from Periphery
1001000180.G10


title: GBM cell 591

description:
Single cell from Periphery
1001000180.E11


title: GBM cell 613

description:
Single cell from Periphery
1001000180.H11


title: GBM cell 589

description:
Single cell from Periphery
1001000180.B9


title: GBM cell 587

description:
Single cell from Periphery
1001000180.E8


title: GBM cell 588

description:
Single cell from Periphery
1001000180.B4


title: GBM cell 585

description:
Single cell from Periphery
1001000179.H8


title: GBM cell 583

description:
Single cell from Periphery
1001000179.F12


title: GBM cell 603

description:
Single cell from Periphery
1001000180.H7


title: GBM cell 584

description:
Single cell from Periphery
1001000179.B6


title: GBM cell 582

description:
Single cell from Periphery
1001000179.A11


title: GBM cell 581

description:
Single cell from Periphery
1001000179.C2


title: GBM cell 586

description:
Single cell from Periphery
1001000179.E10


title: GBM cell 578

description:
Single cell from Periphery
1001000179.D2


title: GBM cell 575

description:
Single cell from Periphery
1001000179.F3


title: GBM cell 577

description:
Single cell from Periphery
1001000179.G12


title: GBM cell 594

description:
Single cell from Periphery
1001000180.G9


title: GBM cell 580

description:
Single cell from Periphery
1001000179.A6


title: GBM cell 574

description:
Single cell from Periphery
1001000179.H2


title: GBM cell 576

description:
Single cell from Periphery
1001000179.F7


title: GBM cell 579

description:
Single cell from Periphery
1001000179.E8


title: GBM cell 573

description:
Single cell from Periphery
1001000179.C11


title: GBM cell 571

description:
Single cell from Periphery
1001000179.G10


title: GBM cell 570

description:
Single cell from Periphery
1001000179.A8


title: GBM cell 572

description:
Single cell from Periphery
1001000179.E4


title: GBM cell 568

description:
Single cell from Periphery
1001000179.F11


title: GBM cell 569

description:
Single cell from Periphery
1001000179.E11


title: GBM cell 567

description:
Single cell from Periphery
1001000179.D12


title: GBM cell 566

description:
Single cell from Periphery
1001000179.B9


title: GBM cell 565

description:
Single cell from Periphery
1001000179.B11


title: GBM cell 564

description:
Single cell from Periphery
1001000179.D8


title: GBM cell 563

description:
Single cell from Periphery
1001000179.D5


title: GBM cell 561

description:
Single cell from Periphery
1001000179.A3


title: GBM cell 559

description:
Single cell from Periphery
1001000179.F2


title: GBM cell 560

description:
Single cell from Periphery
1001000179.E2


title: GBM cell 562

description:
Single cell from Periphery
1001000179.G4


title: GBM cell 555

description:
Single cell from Periphery
1001000179.F8


title: GBM cell 557

description:
Single cell from Periphery
1001000179.C5


title: GBM cell 558

description:
Single cell from Periphery
1001000179.G1


title: GBM cell 2405

description:
Single cell from Periphery
1001000240.G2


title: GBM cell 554

description:
Single cell from Periphery
1001000179.H6


title: GBM cell 556

description:
Single cell from Periphery
1001000179.C6


title: GBM cell 551

description:
Single cell from Periphery
1001000179.G2


title: GBM cell 552

description:
Single cell from Periphery
1001000179.D7


title: GBM cell 550

description:
Single cell from Periphery
1001000179.D10


title: GBM cell 549

description:
Single cell from Periphery
1001000179.G8


title: GBM cell 553

description:
Single cell from Periphery
1001000179.G11


title: GBM cell 545

description:
Single cell from Periphery
1001000179.E1


title: GBM cell 546

description:
Single cell from Periphery
1001000179.A5


title: GBM cell 543

description:
Single cell from Periphery
1001000179.H4


title: GBM cell 541

description:
Single cell from Periphery
1001000179.A7


title: GBM cell 542

description:
Single cell from Periphery
1001000179.E5


title: GBM cell 540

description:
Single cell from Periphery
1001000179.A12


title: GBM cell 539

description:
Single cell from Periphery
1001000179.C9


title: GBM cell 538

description:
Single cell from Periphery
1001000179.B1


title: GBM cell 537

description:
Single cell from Periphery
1001000179.F9


title: GBM cell 536

description:
Single cell from Periphery
1001000179.D1


title: GBM cell 535

description:
Single cell from Periphery
1001000179.G6


title: GBM cell 532

description:
Single cell from Periphery
1001000179.H9


title: GBM cell 533

description:
Single cell from Periphery
1001000179.C12


title: GBM cell 531

description:
Single cell from Periphery
1001000179.F6


title: GBM cell 534

description:
Single cell from Periphery
1001000179.H1


title: GBM cell 548

description:
Single cell from Periphery
1001000179.E7


title: GBM cell 530

description:
Single cell from Periphery
1001000179.A9


title: GBM cell 547

description:
Single cell from Periphery
1001000179.H10


title: GBM cell 528

description:
Single cell from Periphery
1001000179.B3


title: GBM cell 522

description:
Single cell from Periphery
1001000179.E9


title: GBM cell 520

description:
Single cell from Periphery
1001000179.D3


title: GBM cell 525

description:
Single cell from Periphery
1001000179.G5


title: GBM cell 523

description:
Single cell from Periphery
1001000179.E12


title: GBM cell 518

description:
Single cell from Periphery
1001000179.H3


title: GBM cell 529

description:
Single cell from Periphery
1001000179.C3


title: GBM cell 519

description:
Single cell from Periphery
1001000179.F4


title: GBM cell 544

description:
Single cell from Periphery
1001000179.C8


title: GBM cell 517

description:
Single cell from Periphery
1001000179.D4


title: GBM cell 527

description:
Single cell from Periphery
1001000179.E3


title: GBM cell 513

description:
Single cell from Periphery
1001000179.B10


title: GBM cell 514

description:
Single cell from Periphery
1001000179.A2


title: GBM cell 515

description:
Single cell from Periphery
1001000179.F5


title: GBM cell 511

description:
Single cell from Periphery
1001000179.C4


title: GBM cell 516

description:
Single cell from Periphery
1001000179.C10


title: GBM cell 512

description:
Single cell from Periphery
1001000179.F1


title: GBM cell 510

description:
Single cell from Periphery
1001000179.B8


title: GBM cell 509

description:
Single cell from Periphery
1001000179.D6


title: GBM cell 526

description:
Single cell from Periphery
1001000179.H11


title: GBM cell 521

description:
Single cell from Periphery
1001000179.B7


title: GBM cell 524

description:
Single cell from Periphery
1001000179.A1


title: GBM cell 505

description:
Single cell from Periphery
1001000179.A4


title: GBM cell 504

description:
Single cell from Periphery
1001000179.E6


title: GBM cell 503

description:
Single cell from Periphery
1001000179.D9


title: GBM cell 507

description:
Single cell from Periphery
1001000179.D11


title: GBM cell 506

description:
Single cell from Periphery
1001000179.G3


title: GBM cell 501

description:
Single cell from Periphery
1001000179.B4


title: GBM cell 500

description:
Single cell from Periphery
1001000179.A10


title: GBM cell 502

description:
Single cell from Periphery
1001000179.C7


title: GBM cell 498

description:
Single cell from Periphery
1001000179.C1


title: GBM cell 493

description:
Single cell from Periphery
1001000178.H6


title: GBM cell 495

description:
Single cell from Periphery
1001000179.F10


title: GBM cell 494

description:
Single cell from Periphery
1001000178.G10


title: GBM cell 492

description:
Single cell from Periphery
1001000178.H11


title: GBM cell 499

description:
Single cell from Periphery
1001000179.G9


title: GBM cell 489

description:
Single cell from Periphery
1001000178.G9


title: GBM cell 487

description:
Single cell from Periphery
1001000178.H4


title: GBM cell 491

description:
Single cell from Periphery
1001000178.H8


title: GBM cell 486

description:
Single cell from Periphery
1001000178.G11


title: GBM cell 484

description:
Single cell from Periphery
1001000178.H10


title: GBM cell 508

description:
Single cell from Periphery
1001000179.H5


title: GBM cell 485

description:
Single cell from Periphery
1001000178.H7


title: GBM cell 483

description:
Single cell from Periphery
1001000178.H9


title: GBM cell 482

description:
Single cell from Periphery
1001000178.G12


title: GBM cell 481

description:
Single cell from Periphery
1001000178.H3


title: GBM cell 479

description:
Single cell from Periphery
1001000178.E7


title: GBM cell 480

description:
Single cell from Periphery
1001000178.H5


title: GBM cell 478

description:
Single cell from Periphery
1001000178.B11


title: GBM cell 477

description:
Single cell from Periphery
1001000178.A7


title: GBM cell 476

description:
Single cell from Periphery
1001000178.C8


title: GBM cell 474

description:
Single cell from Periphery
1001000178.F5


title: GBM cell 497

description:
Single cell from Periphery
1001000179.H7


title: GBM cell 496

description:
Single cell from Periphery
1001000179.B12


title: GBM cell 471

description:
Single cell from Periphery
1001000178.G6


title: GBM cell 472

description:
Single cell from Periphery
1001000178.D9


title: GBM cell 475

description:
Single cell from Periphery
1001000178.E10


title: GBM cell 469

description:
Single cell from Periphery
1001000178.E2


title: GBM cell 490

description:
Single cell from Periphery
1001000178.H1


title: GBM cell 467

description:
Single cell from Periphery
1001000178.B9


title: GBM cell 473

description:
Single cell from Periphery
1001000178.G2


title: GBM cell 488

description:
Single cell from Periphery
1001000178.H2


title: GBM cell 468

description:
Single cell from Periphery
1001000178.E9


title: GBM cell 470

description:
Single cell from Periphery
1001000178.D2


title: GBM cell 466

description:
Single cell from Periphery
1001000178.B2


title: GBM cell 464

description:
Single cell from Periphery
1001000178.C6


title: GBM cell 463

description:
Single cell from Periphery
1001000178.D6


title: GBM cell 465

description:
Single cell from Periphery
1001000178.C11


title: GBM cell 462

description:
Single cell from Periphery
1001000178.A5


title: GBM cell 460

description:
Single cell from Periphery
1001000178.G4


title: GBM cell 459

description:
Single cell from Periphery
1001000178.B4


title: GBM cell 461

description:
Single cell from Periphery
1001000178.D4


title: GBM cell 458

description:
Single cell from Periphery
1001000178.A10


title: GBM cell 456

description:
Single cell from Periphery
1001000178.B10


title: GBM cell 455

description:
Single cell from Periphery
1001000178.E4


title: GBM cell 454

description:
Single cell from Periphery
1001000178.F12


title: GBM cell 453

description:
Single cell from Periphery
1001000178.B6


title: GBM cell 452

description:
Single cell from Periphery
1001000178.C1


title: GBM cell 449

description:
Single cell from Periphery
1001000178.D5


title: GBM cell 450

description:
Single cell from Periphery
1001000178.F1


title: GBM cell 451

description:
Single cell from Periphery
1001000178.E6


title: GBM cell 448

description:
Single cell from Periphery
1001000178.B8


title: GBM cell 444

description:
Single cell from Periphery
1001000178.E8


title: GBM cell 447

description:
Single cell from Periphery
1001000178.G7


title: GBM cell 437

description:
Single cell from Periphery
1001000178.E12


title: GBM cell 446

description:
Single cell from Periphery
1001000178.D7


title: GBM cell 439

description:
Single cell from Periphery
1001000178.D1


title: GBM cell 441

description:
Single cell from Periphery
1001000178.G5


title: GBM cell 436

description:
Single cell from Periphery
1001000178.G3


title: GBM cell 440

description:
Single cell from Periphery
1001000178.F6


title: GBM cell 443

description:
Single cell from Periphery
1001000178.F3


title: GBM cell 445

description:
Single cell from Periphery
1001000178.D11


title: GBM cell 435

description:
Single cell from Periphery
1001000178.C7


title: GBM cell 434

description:
Single cell from Periphery
1001000178.C12


title: GBM cell 2406

description:
Single cell from Periphery
1001000240.E11


title: GBM cell 442

description:
Single cell from Periphery
1001000178.E11


title: GBM cell 438

description:
Single cell from Periphery
1001000178.A8


title: GBM cell 432

description:
Single cell from Periphery
1001000178.E1


title: GBM cell 433

description:
Single cell from Periphery
1001000178.D3


title: GBM cell 431

description:
Single cell from Periphery
1001000178.C3


title: GBM cell 430

description:
Single cell from Periphery
1001000178.A11


title: GBM cell 429

description:
Single cell from Periphery
1001000178.F8


title: GBM cell 428

description:
Single cell from Periphery
1001000178.B1


title: GBM cell 427

description:
Single cell from Periphery
1001000178.C5


title: GBM cell 425

description:
Single cell from Periphery
1001000178.A6


title: GBM cell 424

description:
Single cell from Periphery
1001000178.B3


title: GBM cell 426

description:
Single cell from Periphery
1001000178.C10


title: GBM cell 423

description:
Single cell from Periphery
1001000178.G1


title: GBM cell 422

description:
Single cell from Periphery
1001000178.C2


title: GBM cell 421

description:
Single cell from Periphery
1001000178.D8


title: GBM cell 420

description:
Single cell from Periphery
1001000178.C9


title: GBM cell 419

description:
Single cell from Periphery
1001000178.F9


title: GBM cell 416

description:
Single cell from Periphery
1001000178.E3


title: GBM cell 418

description:
Single cell from Periphery
1001000178.F2


title: GBM cell 414

description:
Single cell from Periphery
1001000178.A12


title: GBM cell 413

description:
Single cell from Periphery
1001000178.D10


title: GBM cell 412

description:
Single cell from Periphery
1001000178.B5


title: GBM cell 410

description:
Single cell from Periphery
1001000178.F4


title: GBM cell 411

description:
Single cell from Periphery
1001000178.F10


title: GBM cell 407

description:
Single cell from Periphery
1001000178.B7


title: GBM cell 409

description:
Single cell from Periphery
1001000178.D12


title: GBM cell 406

description:
Single cell from Periphery
1001000178.A9


title: GBM cell 405

description:
Single cell from Periphery
1001000178.G8


title: GBM cell 408

description:
Single cell from Periphery
1001000178.E5


title: GBM cell 404

description:
Single cell from Tumor
1001000177.B3


title: GBM cell 402

description:
Single cell from Tumor
1001000177.C7


title: GBM cell 403

description:
Single cell from Tumor
1001000177.D11


title: GBM cell 457

description:
Single cell from Periphery
1001000178.F7


title: GBM cell 401

description:
Single cell from Tumor
1001000177.F8


title: GBM cell 399

description:
Single cell from Tumor
1001000177.D9


title: GBM cell 397

description:
Single cell from Tumor
1001000177.G1


title: GBM cell 395

description:
Single cell from Tumor
1001000177.G3


title: GBM cell 394

description:
Single cell from Tumor
1001000177.E4


title: GBM cell 417

description:
Single cell from Periphery
1001000178.C4


title: GBM cell 396

description:
Single cell from Tumor
1001000177.A5


title: GBM cell 393

description:
Single cell from Tumor
1001000177.C5


title: GBM cell 398

description:
Single cell from Tumor
1001000177.D2


title: GBM cell 391

description:
Single cell from Tumor
1001000177.E2


title: GBM cell 415

description:
Single cell from Periphery
1001000178.F11


title: GBM cell 389

description:
Single cell from Tumor
1001000177.H6


title: GBM cell 392

description:
Single cell from Tumor
1001000177.B9


title: GBM cell 390

description:
Single cell from Tumor
1001000177.C11


title: GBM cell 388

description:
Single cell from Tumor
1001000177.C9


title: GBM cell 386

description:
Single cell from Tumor
1001000177.F6


title: GBM cell 384

description:
Single cell from Tumor
1001000177.C4


title: GBM cell 400

description:
Single cell from Tumor
1001000177.H8


title: GBM cell 383

description:
Single cell from Tumor
1001000177.E10


title: GBM cell 387

description:
Single cell from Tumor
1001000177.A4


title: GBM cell 385

description:
Single cell from Tumor
1001000177.F10


title: GBM cell 377

description:
Single cell from Tumor
1001000177.E8


title: GBM cell 382

description:
Single cell from Tumor
1001000177.F1


title: GBM cell 381

description:
Single cell from Tumor
1001000177.D5


title: GBM cell 376

description:
Single cell from Tumor
1001000177.A11


title: GBM cell 375

description:
Single cell from Tumor
1001000177.G10


title: GBM cell 373

description:
Single cell from Tumor
1001000177.F4


title: GBM cell 374

description:
Single cell from Tumor
1001000177.G7


title: GBM cell 379

description:
Single cell from Tumor
1001000177.D12


title: GBM cell 372

description:
Single cell from Tumor
1001000177.B2


title: GBM cell 371

description:
Single cell from Tumor
1001000177.D3


title: GBM cell 369

description:
Single cell from Tumor
1001000177.B8


title: GBM cell 367

description:
Single cell from Tumor
1001000177.E6


title: GBM cell 370

description:
Single cell from Tumor
1001000177.C2


title: GBM cell 365

description:
Single cell from Tumor
1001000177.E12


title: GBM cell 366

description:
Single cell from Tumor
1001000177.A7


title: GBM cell 368

description:
Single cell from Tumor
1001000177.F12


title: GBM cell 360

description:
Single cell from Tumor
1001000177.H2


title: GBM cell 361

description:
Single cell from Tumor
1001000177.B11


title: GBM cell 364

description:
Single cell from Tumor
1001000177.G5


title: GBM cell 359

description:
Single cell from Tumor
1001000177.G4


title: GBM cell 380

description:
Single cell from Tumor
1001000177.D8


title: GBM cell 363

description:
Single cell from Tumor
1001000177.G11


title: GBM cell 362

description:
Single cell from Tumor
1001000177.H10


title: GBM cell 357

description:
Single cell from Tumor
1001000177.E3


title: GBM cell 354

description:
Single cell from Tumor
1001000177.D4


title: GBM cell 353

description:
Single cell from Tumor
1001000177.D1


title: GBM cell 351

description:
Single cell from Tumor
1001000177.A3


title: GBM cell 355

description:
Single cell from Tumor
1001000177.C8


title: GBM cell 378

description:
Single cell from Tumor
1001000177.H4


title: GBM cell 352

description:
Single cell from Tumor
1001000177.H7


title: GBM cell 349

description:
Single cell from Tumor
1001000177.H3


title: GBM cell 348

description:
Single cell from Tumor
1001000177.F11


title: GBM cell 350

description:
Single cell from Tumor
1001000177.G2


title: GBM cell 345

description:
Single cell from Tumor
1001000177.C12


title: GBM cell 346

description:
Single cell from Tumor
1001000177.E1


title: GBM cell 356

description:
Single cell from Tumor
1001000177.H11


title: GBM cell 344

description:
Single cell from Tumor
1001000177.B4


title: GBM cell 347

description:
Single cell from Tumor
1001000177.A9


title: GBM cell 343

description:
Single cell from Tumor
1001000177.F5


title: GBM cell 342

description:
Single cell from Tumor
1001000177.C6


title: GBM cell 339

description:
Single cell from Tumor
1001000177.C3


title: GBM cell 358

description:
Single cell from Tumor
1001000177.F7


title: GBM cell 338

description:
Single cell from Tumor
1001000177.F3


title: GBM cell 337

description:
Single cell from Tumor
1001000177.H1


title: GBM cell 336

description:
Single cell from Tumor
1001000177.E7


title: GBM cell 340

description:
Single cell from Tumor
1001000177.H5


title: GBM cell 334

description:
Single cell from Tumor
1001000177.B12


title: GBM cell 331

description:
Single cell from Tumor
1001000177.D7


title: GBM cell 330

description:
Single cell from Tumor
1001000177.B7


title: GBM cell 327

description:
Single cell from Tumor
1001000177.E9


title: GBM cell 328

description:
Single cell from Tumor
1001000177.A2


title: GBM cell 325

description:
Single cell from Tumor
1001000177.A6


title: GBM cell 332

description:
Single cell from Tumor
1001000177.F2


title: GBM cell 326

description:
Single cell from Tumor
1001000177.A10


title: GBM cell 323

description:
Single cell from Tumor
1001000177.G12


title: GBM cell 319

description:
Single cell from Tumor
1001000177.D6


title: GBM cell 324

description:
Single cell from Tumor
1001000177.B1


title: GBM cell 318

description:
Single cell from Tumor
1001000177.A8


title: GBM cell 317

description:
Single cell from Tumor
1001000177.B6


title: GBM cell 320

description:
Single cell from Tumor
1001000177.E11


title: GBM cell 316

description:
Single cell from Tumor
1001000177.G9


title: GBM cell 341

description:
Single cell from Tumor
1001000177.D10


title: GBM cell 314

description:
Single cell from Tumor
1001000176.D8


title: GBM cell 315

description:
Single cell from Tumor
1001000176.A2


title: GBM cell 311

description:
Single cell from Tumor
1001000176.C10


title: GBM cell 335

description:
Single cell from Tumor
1001000177.A12


title: GBM cell 333

description:
Single cell from Tumor
1001000177.G8


title: GBM cell 313

description:
Single cell from Tumor
1001000176.B2


title: GBM cell 310

description:
Single cell from Tumor
1001000176.H8


title: GBM cell 329

description:
Single cell from Tumor
1001000177.C1


title: GBM cell 309

description:
Single cell from Tumor
1001000176.D12


title: GBM cell 307

description:
Single cell from Tumor
1001000176.F4


title: GBM cell 306

description:
Single cell from Tumor
1001000176.F11


title: GBM cell 322

description:
Single cell from Tumor
1001000177.B10


title: GBM cell 305

description:
Single cell from Tumor
1001000176.B4


title: GBM cell 321

description:
Single cell from Tumor
1001000177.G6


title: GBM cell 302

description:
Single cell from Tumor
1001000176.E9


title: GBM cell 301

description:
Single cell from Tumor
1001000176.H1


title: GBM cell 304

description:
Single cell from Tumor
1001000176.G9


title: GBM cell 298

description:
Single cell from Tumor
1001000176.C8


title: GBM cell 303

description:
Single cell from Tumor
1001000176.D2


title: GBM cell 297

description:
Single cell from Tumor
1001000176.A4


title: GBM cell 294

description:
Single cell from Tumor
1001000176.F9


title: GBM cell 300

description:
Single cell from Tumor
1001000176.B11


title: GBM cell 295

description:
Single cell from Tumor
1001000176.B1


title: GBM cell 296

description:
Single cell from Tumor
1001000176.H4


title: GBM cell 290

description:
Single cell from Tumor
1001000176.C3


title: GBM cell 293

description:
Single cell from Tumor
1001000176.E2


title: GBM cell 292

description:
Single cell from Tumor
1001000176.G1


title: GBM cell 291

description:
Single cell from Tumor
1001000176.E10


title: GBM cell 299

description:
Single cell from Tumor
1001000176.C4


title: GBM cell 288

description:
Single cell from Tumor
1001000176.G12


title: GBM cell 286

description:
Single cell from Tumor
1001000176.D1


title: GBM cell 285

description:
Single cell from Tumor
1001000176.C11


title: GBM cell 308

description:
Single cell from Tumor
1001000176.H10


title: GBM cell 283

description:
Single cell from Tumor
1001000176.B8


title: GBM cell 312

description:
Single cell from Tumor
1001000176.E4


title: GBM cell 282

description:
Single cell from Tumor
1001000176.G3


title: GBM cell 281

description:
Single cell from Tumor
1001000176.F7


title: GBM cell 280

description:
Single cell from Tumor
1001000176.C1


title: GBM cell 287

description:
Single cell from Tumor
1001000176.G4


title: GBM cell 279

description:
Single cell from Tumor
1001000176.A1


title: GBM cell 277

description:
Single cell from Tumor
1001000176.E5


title: GBM cell 273

description:
Single cell from Tumor
1001000176.A3


title: GBM cell 274

description:
Single cell from Tumor
1001000176.H11


title: GBM cell 275

description:
Single cell from Tumor
1001000176.H9


title: GBM cell 278

description:
Single cell from Tumor
1001000176.H2


title: GBM cell 271

description:
Single cell from Tumor
1001000176.D10


title: GBM cell 272

description:
Single cell from Tumor
1001000176.F5


title: GBM cell 289

description:
Single cell from Tumor
1001000176.A11


title: GBM cell 265

description:
Single cell from Tumor
1001000176.A12


title: GBM cell 268

description:
Single cell from Tumor
1001000176.B3


title: GBM cell 267

description:
Single cell from Tumor
1001000176.C12


title: GBM cell 264

description:
Single cell from Tumor
1001000176.D3


title: GBM cell 266

description:
Single cell from Tumor
1001000176.G10


title: GBM cell 263

description:
Single cell from Tumor
1001000176.G8


title: GBM cell 269

description:
Single cell from Tumor
1001000176.A8


title: GBM cell 262

description:
Single cell from Tumor
1001000176.E1


title: GBM cell 270

description:
Single cell from Tumor
1001000176.G7


title: GBM cell 261

description:
Single cell from Tumor
1001000176.H7


title: GBM cell 259

description:
Single cell from Tumor
1001000176.B12


title: GBM cell 260

description:
Single cell from Tumor
1001000176.E7


title: GBM cell 284

description:
Single cell from Tumor
1001000176.C7


title: GBM cell 255

description:
Single cell from Tumor
1001000176.B5


title: GBM cell 258

description:
Single cell from Tumor
1001000176.D11


title: GBM cell 257

description:
Single cell from Tumor
1001000176.B10


title: GBM cell 276

description:
Single cell from Tumor
1001000176.C5


title: GBM cell 253

description:
Single cell from Tumor
1001000176.E11


title: GBM cell 251

description:
Single cell from Tumor
1001000176.E8


title: GBM cell 254

description:
Single cell from Tumor
1001000176.E3


title: GBM cell 250

description:
Single cell from Tumor
1001000176.G11


title: GBM cell 252

description:
Single cell from Tumor
1001000176.F12


title: GBM cell 256

description:
Single cell from Tumor
1001000176.D5


title: GBM cell 246

description:
Single cell from Tumor
1001000176.D4


title: GBM cell 249

description:
Single cell from Tumor
1001000176.C2


title: GBM cell 247

description:
Single cell from Tumor
1001000176.F2


title: GBM cell 245

description:
Single cell from Tumor
1001000176.A5


title: GBM cell 248

description:
Single cell from Tumor
1001000176.A10


title: GBM cell 244

description:
Single cell from Tumor
1001000176.B7


title: GBM cell 240

description:
Single cell from Tumor
1001000176.F10


title: GBM cell 243

description:
Single cell from Tumor
1001000176.C9


title: GBM cell 239

description:
Single cell from Tumor
1001000176.G2


title: GBM cell 241

description:
Single cell from Tumor
1001000176.F1


title: GBM cell 235

description:
Single cell from Tumor
1001000176.D9


title: GBM cell 236

description:
Single cell from Tumor
1001000176.G5


title: GBM cell 237

description:
Single cell from Tumor
1001000176.H3


title: GBM cell 233

description:
Single cell from Tumor
1001000176.A7


title: GBM cell 234

description:
Single cell from Tumor
1001000176.B9


title: GBM cell 230

description:
Single cell from Tumor
1001000175.A12

value: Unpanned


title: GBM cell 231

description:
Single cell from Tumor
1001000175.A1


title: GBM cell 232

description:
Single cell from Tumor
1001000175.A8


title: GBM cell 229

description:
Single cell from Tumor
1001000175.E12


title: GBM cell 228

description:
Single cell from Tumor
1001000175.C6


title: GBM cell 227

description:
Single cell from Tumor
1001000175.G3


title: GBM cell 226

description:
Single cell from Tumor
1001000175.F7


title: GBM cell 223

description:
Single cell from Tumor
1001000175.D8


title: GBM cell 224

description:
Single cell from Tumor
1001000175.F10


title: GBM cell 221

description:
Single cell from Tumor
1001000175.B11


title: GBM cell 222

description:
Single cell from Tumor
1001000175.E10


title: GBM cell 225

description:
Single cell from Tumor
1001000175.E9


title: GBM cell 220

description:
Single cell from Tumor
1001000175.B2


title: GBM cell 217

description:
Single cell from Tumor
1001000175.E6


title: GBM cell 242

description:
Single cell from Tumor
1001000176.D7


title: GBM cell 238

description:
Single cell from Tumor
1001000176.A9


title: GBM cell 214

description:
Single cell from Tumor
1001000175.D3


title: GBM cell 218

description:
Single cell from Tumor
1001000175.A6


title: GBM cell 213

description:
Single cell from Tumor
1001000175.B7


title: GBM cell 219

description:
Single cell from Tumor
1001000175.H8


title: GBM cell 212

description:
Single cell from Tumor
1001000175.F12


title: GBM cell 209

description:
Single cell from Tumor
1001000175.D11


title: GBM cell 207

description:
Single cell from Tumor
1001000175.G10


title: GBM cell 208

description:
Single cell from Tumor
1001000175.F2


title: GBM cell 210

description:
Single cell from Tumor
1001000175.F5


title: GBM cell 206

description:
Single cell from Tumor
1001000175.C12


title: GBM cell 204

description:
Single cell from Tumor
1001000175.H3


title: GBM cell 205

description:
Single cell from Tumor
1001000175.A4


title: GBM cell 200

description:
Single cell from Tumor
1001000175.D1


title: GBM cell 199

description:
Single cell from Tumor
1001000175.B5


title: GBM cell 203

description:
Single cell from Tumor
1001000175.E2


title: GBM cell 201

description:
Single cell from Tumor
1001000175.C2


title: GBM cell 198

description:
Single cell from Tumor
1001000175.C10


title: GBM cell 202

description:
Single cell from Tumor
1001000175.F4


title: GBM cell 215

description:
Single cell from Tumor
1001000175.C9


title: GBM cell 216

description:
Single cell from Tumor
1001000175.D6


title: GBM cell 196

description:
Single cell from Tumor
1001000175.E11


title: GBM cell 194

description:
Single cell from Tumor
1001000175.A2


title: GBM cell 195

description:
Single cell from Tumor
1001000175.H1


title: GBM cell 193

description:
Single cell from Tumor
1001000175.G1


title: GBM cell 192

description:
Single cell from Tumor
1001000175.B3


title: GBM cell 191

description:
Single cell from Tumor
1001000175.E4


title: GBM cell 189

description:
Single cell from Tumor
1001000175.E7


title: GBM cell 190

description:
Single cell from Tumor
1001000175.A10


title: GBM cell 211

description:
Single cell from Tumor
1001000175.C8


title: GBM cell 188

description:
Single cell from Tumor
1001000175.F9


title: GBM cell 185

description:
Single cell from Tumor
1001000175.G9


title: GBM cell 184

description:
Single cell from Tumor
1001000175.F11


title: GBM cell 186

description:
Single cell from Tumor
1001000175.G4


title: GBM cell 183

description:
Single cell from Tumor
1001000175.E3


title: GBM cell 181

description:
Single cell from Tumor
1001000175.C5


title: GBM cell 182

description:
Single cell from Tumor
1001000175.B12


title: GBM cell 180

description:
Single cell from Tumor
1001000175.D5


title: GBM cell 179

description:
Single cell from Tumor
1001000175.B1


title: GBM cell 197

description:
Single cell from Tumor
1001000175.B10


title: GBM cell 178

description:
Single cell from Tumor
1001000175.B8


title: GBM cell 177

description:
Single cell from Tumor
1001000175.G6


title: GBM cell 176

description:
Single cell from Tumor
1001000175.H7


title: GBM cell 174

description:
Single cell from Tumor
1001000175.D10


title: GBM cell 170

description:
Single cell from Tumor
1001000175.D12


title: GBM cell 172

description:
Single cell from Tumor
1001000175.D4


title: GBM cell 168

description:
Single cell from Tumor
1001000175.H5


title: GBM cell 167

description:
Single cell from Tumor
1001000175.A7


title: GBM cell 175

description:
Single cell from Tumor
1001000175.A9


title: GBM cell 169

description:
Single cell from Tumor
1001000175.F8


title: GBM cell 173

description:
Single cell from Tumor
1001000175.B6


title: GBM cell 160

description:
Single cell from Tumor
1001000175.E8


title: GBM cell 162

description:
Single cell from Tumor
1001000175.H6


title: GBM cell 187

description:
Single cell from Tumor
1001000175.C4


title: GBM cell 161

description:
Single cell from Tumor
1001000175.F6


title: GBM cell 164

description:
Single cell from Tumor
1001000175.C7


title: GBM cell 158

description:
Single cell from Tumor
1001000175.C1


title: GBM cell 157

description:
Single cell from Tumor
1001000175.D2


title: GBM cell 166

description:
Single cell from Tumor
1001000175.G8


title: GBM cell 156

description:
Single cell from Tumor
1001000175.B4


title: GBM cell 153

description:
Single cell from Tumor
1001000175.G2


title: GBM cell 155

description:
Single cell from Tumor
1001000175.G11


title: GBM cell 171

description:
Single cell from Tumor
1001000175.A5


title: GBM cell 151

description:
Single cell from Tumor
1001000175.B9


title: GBM cell 150

description:
Single cell from Tumor
1001000175.F3


title: GBM cell 154

description:
Single cell from Tumor
1001000175.H9

value: Neuron


title: GBM cell 149

description:
Single cell from Tumor
1001000175.G12


title: GBM cell 148

description:
Single cell from Tumor
1001000175.D9


title: GBM cell 163

description:
Single cell from Tumor
1001000175.H11


title: GBM cell 146

description:
Single cell from Tumor
1001000175.H2


title: GBM cell 165

description:
Single cell from Tumor
1001000175.A11


title: GBM cell 144

description:
Single cell from Tumor
1001000175.E1


title: GBM cell 145

description:
Single cell from Tumor
1001000175.A3


title: GBM cell 143

description:
Single cell from Tumor
1001000174.D9


title: GBM cell 147

description:
Single cell from Tumor
1001000175.C11


title: GBM cell 142

description:
Single cell from Tumor
1001000174.D3


title: GBM cell 140

description:
Single cell from Tumor
1001000174.H5


title: GBM cell 159

description:
Single cell from Tumor
1001000175.G7


title: GBM cell 141

description:
Single cell from Tumor
1001000174.C6


title: GBM cell 137

description:
Single cell from Tumor
1001000174.G11


title: GBM cell 139

description:
Single cell from Tumor
1001000174.E3


title: GBM cell 138

description:
Single cell from Tumor
1001000174.A3


title: GBM cell 136

description:
Single cell from Tumor
1001000174.D10


title: GBM cell 135

description:
Single cell from Tumor
1001000174.F8


title: GBM cell 134

description:
Single cell from Tumor
1001000174.C4


title: GBM cell 131

description:
Single cell from Tumor
1001000174.C9


title: GBM cell 132

description:
Single cell from Tumor
1001000174.D7


title: GBM cell 152

description:
Single cell from Tumor
1001000175.H4


title: GBM cell 130

description:
Single cell from Tumor
1001000174.C12


title: GBM cell 133

description:
Single cell from Tumor
1001000174.D2


title: GBM cell 129

description:
Single cell from Tumor
1001000174.B1


title: GBM cell 126

description:
Single cell from Tumor
1001000174.F11


title: GBM cell 125

description:
Single cell from Tumor
1001000174.E8


title: GBM cell 124

description:
Single cell from Tumor
1001000174.E11


title: GBM cell 123

description:
Single cell from Tumor
1001000174.B5


title: GBM cell 127

description:
Single cell from Tumor
1001000174.A1


title: GBM cell 122

description:
Single cell from Tumor
1001000174.G8


title: GBM cell 118

description:
Single cell from Tumor
1001000174.F3


title: GBM cell 119

description:
Single cell from Tumor
1001000174.C11


title: GBM cell 117

description:
Single cell from Tumor
1001000174.F1


title: GBM cell 121

description:
Single cell from Tumor
1001000174.H1


title: GBM cell 116

description:
Single cell from Tumor
1001000174.C2


title: GBM cell 114

description:
Single cell from Tumor
1001000174.A8


title: GBM cell 120

description:
Single cell from Tumor
1001000174.H8


title: GBM cell 115

description:
Single cell from Tumor
1001000174.B10


title: GBM cell 112

description:
Single cell from Tumor
1001000174.E6


title: GBM cell 113

description:
Single cell from Tumor
1001000174.G3


title: GBM cell 110

description:
Single cell from Tumor
1001000174.H3


title: GBM cell 111

description:
Single cell from Tumor
1001000174.F12


title: GBM cell 108

description:
Single cell from Tumor
1001000174.G6


title: GBM cell 106

description:
Single cell from Tumor
1001000174.B3


title: GBM cell 128

description:
Single cell from Tumor
1001000174.E7


title: GBM cell 109

description:
Single cell from Tumor
1001000174.D6


title: GBM cell 102

description:
Single cell from Tumor
1001000174.A4


title: GBM cell 107

description:
Single cell from Tumor
1001000174.F5


title: GBM cell 104

description:
Single cell from Tumor
1001000174.B12


title: GBM cell 105

description:
Single cell from Tumor
1001000174.D11


title: GBM cell 103

description:
Single cell from Tumor
1001000174.C7


title: GBM cell 101

description:
Single cell from Tumor
1001000174.G12


title: GBM cell 100

description:
Single cell from Tumor
1001000174.A9


title: GBM cell 99

description:
Single cell from Tumor
1001000174.H11


title: GBM cell 98

description:
Single cell from Tumor
1001000174.D4


title: GBM cell 95

description:
Single cell from Tumor
1001000174.D1


title: GBM cell 97

description:
Single cell from Tumor
1001000174.G9


title: GBM cell 93

description:
Single cell from Tumor
1001000174.C5


title: GBM cell 96

description:
Single cell from Tumor
1001000174.G4


title: GBM cell 94

description:
Single cell from Tumor
1001000174.E9


title: GBM cell 92

description:
Single cell from Tumor
1001000174.H4


title: GBM cell 91

description:
Single cell from Tumor
1001000174.D12


title: GBM cell 90

description:
Single cell from Tumor
1001000174.E4


title: GBM cell 85

description:
Single cell from Tumor
1001000174.B7


title: GBM cell 88

description:
Single cell from Tumor
1001000174.F7


title: GBM cell 86

description:
Single cell from Tumor
1001000174.A7


title: GBM cell 87

description:
Single cell from Tumor
1001000174.H10


title: GBM cell 89

description:
Single cell from Tumor
1001000174.A2


title: GBM cell 84

description:
Single cell from Tumor
1001000174.C3


title: GBM cell 83

description:
Single cell from Tumor
1001000174.H6


title: GBM cell 82

description:
Single cell from Tumor
1001000174.D8


title: GBM cell 78

description:
Single cell from Tumor
1001000174.C10


title: GBM cell 81

description:
Single cell from Tumor
1001000174.G2


title: GBM cell 80

description:
Single cell from Tumor
1001000174.E2


title: GBM cell 79

description:
Single cell from Tumor
1001000174.B6


title: GBM cell 76

description:
Single cell from Tumor
1001000174.F9


title: GBM cell 75

description:
Single cell from Tumor
1001000174.F2


title: GBM cell 73

description:
Single cell from Tumor
1001000174.A5


title: GBM cell 72

description:
Single cell from Tumor
1001000174.F10


title: GBM cell 74

description:
Single cell from Tumor
1001000174.B8


title: GBM cell 69

description:
Single cell from Tumor
1001000174.D5


title: GBM cell 71

description:
Single cell from Tumor
1001000174.B11


title: GBM cell 68

description:
Single cell from Tumor
1001000174.E10


title: GBM cell 67

description:
Single cell from Tumor
1001000174.H7


title: GBM cell 66

description:
Single cell from Tumor
1001000174.B4


title: GBM cell 63

description:
Single cell from Tumor
1001000174.G10


title: GBM cell 62

description:
Single cell from Tumor
1001000174.A10


title: GBM cell 61

description:
Single cell from Tumor
1001000174.E12


title: GBM cell 64

description:
Single cell from Tumor
1001000174.C8


title: GBM cell 57

description:
Single cell from Tumor
1001000173.D1


title: GBM cell 58

description:
Single cell from Tumor
1001000174.G5


title: GBM cell 55

description:
Single cell from Tumor
1001000173.B2


title: GBM cell 77

description:
Single cell from Tumor
1001000174.F4


title: GBM cell 54

description:
Single cell from Tumor
1001000173.C7


title: GBM cell 53

description:
Single cell from Tumor
1001000173.F8


title: GBM cell 52

description:
Single cell from Tumor
1001000173.B9


title: GBM cell 50

description:
Single cell from Tumor
1001000173.E5


title: GBM cell 49

description:
Single cell from Tumor
1001000173.F11


title: GBM cell 56

description:
Single cell from Tumor
1001000173.H4


title: GBM cell 70

description:
Single cell from Tumor
1001000174.E5


title: GBM cell 48

description:
Single cell from Tumor
1001000173.E12


title: GBM cell 45

description:
Single cell from Tumor
1001000173.G9


title: GBM cell 59

description:
Single cell from Tumor
1001000174.H9


title: GBM cell 44

description:
Single cell from Tumor
1001000173.B11


title: GBM cell 46

description:
Single cell from Tumor
1001000173.F1


title: GBM cell 65

description:
Single cell from Tumor
1001000174.F6


title: GBM cell 47

description:
Single cell from Tumor
1001000173.D8


title: GBM cell 43

description:
Single cell from Tumor
1001000173.G4


title: GBM cell 51

description:
Single cell from Tumor
1001000173.G10


title: GBM cell 39

description:
Single cell from Tumor
1001000173.C10


title: GBM cell 42

description:
Single cell from Tumor
1001000173.A5


title: GBM cell 36

description:
Single cell from Tumor
1001000173.D3


title: GBM cell 37

description:
Single cell from Tumor
1001000173.E1


title: GBM cell 38

description:
Single cell from Tumor
1001000173.G12


title: GBM cell 35

description:
Single cell from Tumor
1001000173.A3


title: GBM cell 32

description:
Single cell from Tumor
1001000173.H7


title: GBM cell 33

description:
Single cell from Tumor
1001000173.H5


title: GBM cell 30

description:
Single cell from Tumor
1001000173.A12


title: GBM cell 31

description:
Single cell from Tumor
1001000173.C1


title: GBM cell 29

description:
Single cell from Tumor
1001000173.D7


title: GBM cell 28

description:
Single cell from Tumor
1001000173.B3


title: GBM cell 27

description:
Single cell from Tumor
1001000173.G1


title: GBM cell 21

description:
Single cell from Tumor
1001000173.F9


title: GBM cell 22

description:
Single cell from Tumor
1001000173.G6


title: GBM cell 19

description:
Single cell from Tumor
1001000173.A7


title: GBM cell 20

description:
Single cell from Tumor
1001000173.B8


title: GBM cell 24

description:
Single cell from Tumor
1001000173.D2


title: GBM cell 26

description:
Single cell from Tumor
1001000173.H9


title: GBM cell 41

description:
Single cell from Tumor
1001000173.D11


title: GBM cell 17

description:
Single cell from Tumor
1001000173.B1


title: GBM cell 15

description:
Single cell from Tumor
1001000173.E6


title: GBM cell 25

description:
Single cell from Tumor
1001000173.F2


title: GBM cell 23

description:
Single cell from Tumor
1001000173.A9


title: GBM cell 18

description:
Single cell from Tumor
1001000173.B10


title: GBM cell 16

description:
Single cell from Tumor
1001000173.C4


title: GBM cell 40

description:
Single cell from Tumor
1001000173.C3


title: GBM cell 14

description:
Single cell from Tumor
1001000173.E10


title: GBM cell 13

description:
Single cell from Tumor
1001000173.F4


title: GBM cell 8

description:
Single cell from Tumor
1001000173.D6


title: GBM cell 10

description:
Single cell from Tumor
1001000173.E4


title: GBM cell 9

description:
Single cell from Tumor
1001000173.H1


title: GBM cell 11

description:
Single cell from Tumor
1001000173.B6


title: GBM cell 34

description:
Single cell from Tumor
1001000173.G2


title: GBM cell 5

description:
Single cell from Tumor
1001000173.E2


title: GBM cell 4

description:
Single cell from Tumor
1001000173.A2


title: GBM cell 60

description:
Single cell from Tumor
1001000174.H2


title: GBM cell 2

description:
Single cell from Tumor
1001000173.D4


title: GBM cell 1

description:
Single cell from Tumor
1001000173.G8


title: GBM cell 3

description:
Single cell from Tumor
1001000173.B4


title: GBM cell 12

description:
Single cell from Tumor
1001000173.C2


title: GBM cell 6

description:
Single cell from Tumor
1001000173.F6


title: Control-of-mice-1--2--4_S44

city: New York

first: Isabella

last: Kong

state: New York

address: 1300 York Ave

institute: Weill Cornell Medicine

data_processing:
Basecalling was performed using CASAVAv1.8.2
Sequenced reads were trimmed using Cutadapt (v1.9) and mapped to the mouse genome (mm10) using HISAT2
FeatureCounts was used for read counting (Liao et al., 2014) after which differential gene expression analysis was performed using Voom-LIMMA packages (Law et al., 2014)
Genome_build: mm10
Supplementary_files_format_and_content: Excel Spreadsheet containing Counts Per Million and expression estimates

molecule: total RNA

organism: Mus musculus

source_name: sorted GMP

growth_protocol: Mice were transplanted with primary AML cells from 3 different donors (clone_1_BM_mTmG, clone_3_BM_mTmG and clone_19_spleen_mTmG). Upon full infiltration, tibias and femurs were harvested and metaphysis and diaphysis separated using scissors. Endosteal AML cells were isolated by crushing the metaphysis and sorting DAPI-GFP+mTomato+ cells. Central AML cells were isolated by flushing the diaphysis and sorting DAPI-GFP+mTomato+ cells. The control population, GMPs, was sorted from whole BM of age- and sex-matched wild-type mice

extract_protocol:
RNA was isolated using Rneasy Mini Kit (Qiagen)
3'mRNA-sequencing libraries were prepared from 100ng of total RNA using the QuantSeq 3' mRNA-Seq Library Prep Kit (Lexogen) according to the manufacturers instruction

value: GMP


title: GBM cell 7

description:
Single cell from Tumor
1001000173.B12


title: Control-of-mice-1--2--3_S43


title: AML-mTmG-clone-3-BM_S36

source_name: Central AML cells

value: AML


title: AML-mTmG-clone-19-spleen_S42


title: AML_mTmG-clone-1-BM_S47

source_name: Endosteal AML cells


title: AML_mTmG-clone-1-BM_S48


title: Control-of-mice-1--2--5_S45


title: AML_mTmG-clone-1-BM_S49


title: AML-mTmG-clone-19-spleen_S38


title: Control-of-mice-10--11--12_S57


title: AML-mTmG-clone-19-spleen_S37


title: AML_mTmG-clone-1-BM_S51


title: Control-of-mice-7--8--9_S55


title: AML-mTmG-clone-3-BM_S35


title: AML_mTmG-clone-1-BM_S52


title: AML-mTmG-clone-19-spleen_S40


title: AML-mTmG-clone-19-spleen_S39


title: AML-mTmG-clone-19-spleen_S41


title: Control-of-mice-10--11--12_S56


title: AML-mTmG-clone-3-BM_S34


title: AML_mTmG-clone-1-BM_S50


title: Control-of-mice-7--8--9_S53


title: AML-mTmG-clone-3-BM_S32


title: Control-of-mice-7--8--9_S54


title: AML-mTmG-clone-3-BM_S33


title: AML-mTmG-clone-3-BM_S31


title: Control-of-mice-10--11--12_S58


title: sRNA_Seq_E14_WT_1B

city: Cambridge

first: Felix

last: Krueger

address: Granta Park

department: Bioinformatics

country: United Kingdom

institute: Altos Labs

library_source: genomic

data_processing:
small RNASeq: Raw FastQ data were trimmed with Trim Galore (v0.3.5, default parameters) and mapped to the mouse NCBIM37 genome assembly using bowtie2 (version 2.2.6), guided by gene models from Ensembl v61. Data were quantitated at mRNA level using the read count enrichment over mRNAs in SeqMonk software (www.bioinformatics.babraham.ac.uk/projects/seqmonk/).
Genome_build: NCBIM37
Supplementary_files_format_and_content: Quantitated smallRNA-Seq data file is tab delimited and contains the following 106 columns: (1) mRNA name (Ensembl); (2) Chromosome; (3) Start; (4) End; (5) Strand; (6-106) log2 RPKM values for each sample

molecule: genomic DNA

source_name: sRNA Seq E14 WT 1B

extract_protocol:
smallRNASeq: 10-1000ng RNA was used for library preparation using Illumina small RNA Library Prep Kit v2 (Illumina) following the manufacturer’s instructions. Libraries were indexed using Illumina smallRNA Indexes and 50 bp single-end or paired-end sequencing was performed on Illumina HiSeq 2000 or Miseq instruments using TruSeq reagents (Illumina, San Diego, CA, USA), according to manufacturer’s instructions.
RNA was isolated using TriReagent (Sigma) and treated with DNAseI (Ambion DNA-free DNA Cat #1311027) using manufacturers instructions
smallRNASeq: 10-1000ng RNA was used for library preparation using Illumina small RNA Library Prep Kit v2 (Illumina) following the manufacturer’s instructions. Libraries were indexed using Illumina smallRNA Indexes and 50 bp single-end or paired-end sequencing was performed on Illumina HiSeq 2000 or Miseq instruments using TruSeq reagents (Illumina, San Diego, CA, USA), according to manufacturer’s instructions.

tag: background strain

value: ESC

tag: genotype

value: Wildtype


title: sRNA_Seq_E14_WT_1A

source_name: sRNA Seq E14 WT 1A


title: sRNA_Seq_E14_2B

source_name: sRNA Seq E14 2B


title: sRNA_Seq_E14_DICERKO_DNMT1KO_1A

source_name: sRNA Seq E14 DICERKO DNMT1KO 1A

value: Dicer/Dnmt1 -/-


title: sRNA_Seq_E14_WT_3B

source_name: sRNA Seq E14 WT 3B


title: sRNA_Seq_E14_DICERKO_DNMT1KO_2B

source_name: sRNA Seq E14 DICERKO DNMT1KO 2B


title: sRNA_Seq_E14_DNMT1KO_B

source_name: sRNA Seq E14 DNMT1KO B

value: Dnmt1 -/-


title: sRNA_Seq_E14_DNMT1KO_A

source_name: sRNA Seq E14 DNMT1KO A


title: sRNA_Seq_E14_d25.2_DNMT1KO

data_processing:
small RNASeq: Raw FastQ data were trimmed with Trim Galore (v0.3.5, default parameters) and mapped to the mouse NCBIM37 genome assembly using Bowtie2 (version 2.2.9). Data were quantitated at gene level using the read count enrichment over genes correcting for reads per million and read length  in SeqMonk software (www.bioinformatics.babraham.ac.uk/projects/seqmonk/).
Genome_build: NCBIM37
Supplementary_files_format_and_content: Quantitated RNA-Seq data file is tab delimited and contains the following 89 columns: (1) gene name; (2) Chromosome; (3) Start; (4) End; (5) Strand; (6-89) RPKM values of each sample

extract_protocol:
RNA was isolated using TriReagent (Sigma) and treated with DNAseI (Ambion DNA-free DNA Cat #1311027) using manufacturers instructions
smallRNASeq: 10-1000ng RNA was used for library preparation using Illumina small RNA Library Prep Kit v2 (Illumina) following the manufacturer’s instructions. Libraries were indexed using Illumina smallRNA Indexes and 50 bp single-end or paired-end sequencing was performed on Illumina HiSeq 2000 or Miseq instruments using TruSeq reagents (Illumina, San Diego, CA, USA), according to manufacturer’s instructions.

value: Dnmt1 KO


title: sRNA_Seq_E14_d25.3_control


title: sRNA_Seq_E14_DICERKO_DNMT1KO_1B

source_name: sRNA Seq E14 DICERKO DNMT1KO 1B


title: sRNA_Seq_E14_2A

source_name: sRNA Seq E14 2A


title: sRNA_Seq_E14_d25.3_DNMT1KO


title: sRNA_Seq_E14_d25.2_control


title: sRNA_Seq_E14_WT_3A

source_name: sRNA Seq E14 WT 3A


title: sRNA_Seq_E14_DICERKO_DNMT1KO_2A

source_name: sRNA Seq E14 DICERKO DNMT1KO 2A


title: sRNA_Seq_E14_d25.1_control


title: mmu_FUS_CLIP_hFUSR495X_1

city: Baltimore

first: Manolis

last: Maragkakis

state: MD

address: 251 Bayview Blvd

institute: National Institute on Aging

description: FUSR495X bound RNA

data_processing:
CLIP-Seq and Ribo-Seq adapter trim: the adaptor sequences were trimmed from the reads using cutadapt (v1.12). The adaptor AGGGAGGACGATGCGG was trimmed from the 5’-end of reads and GTGTCAGTCACTTCCAGCGGTCGTATGCCGTCTTCTGCTTG was trimmed from the 3’-end allowing for 0.25 error rate. Only reads longer than 15-nt after adaptor trimming were retained. RNA-Seq adapter trim: The adaptor sequences were trimmed from the reads using the cutadapt software in paired-end mode. The adaptor AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC was trimmed from the 3’-end of mate 1 reads and AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA was trimmed from the 3’-end of mate 2 reads allowing for 0.25 error rate.
CLIP-Seq and Ribo-Seq read alignment: reads were aligned to the mouse genome (mm9) using the STAR aligner (v2.4.1c) and the following parameters --outFilterMultimapScoreRange 0 --alignIntronMax 50000 --outFilterIntronMotifs RemoveNoncanonicalUnannotated --outFilterMatchNmin 15 --outFilterMatchNminOverLread 0.9 --sjdbOverhang 100. Reads mapping to areas annotated by RepeatMasker as ribosomal RNAs or tRNAs were excluded from further analysis. RNA-Seq read alignment: Paired-end alignment was performed using STAR with the same parameters as for CLIP and Ribo-Seq.
Aligned reads were loaded into a SQLite3 database for further processing with CLIPSeqTools (v0.1.7) and annotated with information whether they overlap with elements from RepeatMasker (downloaded from UCSC) and genes (from UCSC gene model annotation file).
Gene counts were measured using CLIPSeqTools
Genome_build: mm9
Supplementary_files_format_and_content: Processed files are TAB delimited files quantifying the number of reads in each gene. Files contain the following columns: gene_name, gene_location, gene_length, gene_count, gene_count_per_nt, gene_exonic_count, gene_exonic_length, gene_exonic_count_per_nt, gene_intronic_count, gene_intronic_length, gene_intronic_count_per_nt

source_name: Neurons

growth_protocol: Mouse embryonic stem cells (ES, E14Tg2A.4) were maintained in ES medium on gelatinized plates without feeder cells. Neuronal differentiation was performed as described previously (Wichterle et al., 2009). Cells were maintained into ADFNB+GDNF.

extract_protocol:
For CLIP samples, UV crosslinked RNA bound to the exogenous protein was isolated from immunoprecipitated sample with anti-FLAG antibody (CellSignaling, #2368). For RNA-seq, total RNA was isolated from cells expressing exogenous protein and ribosomal and transfer RNA were depleted with Ribo-Zero Gold kit (Illumina). For Ribo-seq, the ribosome protected RNA fragment (RPF) between 25 to 35 nt in size were collected from cells expressing exogenous protein according to a previous report (Ingolia NT et al, Nat Protc. 2012).
For CLIP-seq, library preparation was performed as described in Nakaya et al, RNA, 2013. Briefly, protein bound RNA was ligated with a 3'-linker with biotin by T4 RNA ligase and then treated with T4 PNK (NEB) and extracted from protein. Then, a 5'-linker was ligated and amplified by RT-PCR. For RNA-seq, total RNA was prepared as above and the library was prepared using TruSeq Stranded mRNA LT Sample Prep Kit (Illumina). For Ribo-seq, Ribosome protected fragments (RPFs) were used as input and library was prepared as described in the RNA-seq library preparation in Nakaya et al, RNA, 2013. Briefly, a 3'-linker with biotin was ligated to the RPFs and purified with streptoavidin attached beads and then a 5'-linker was ligated on the beads. Following several wash, the RNA on beads was used for RT-PCR as template. The following sequences need to be trimmed from raw reads: For CLIP-Seq and Ribo-Seq "GTGTCAGTCACTTCCAGCGGTCGTATGCCGTCTTCTGCTTG" needs to be trimmed from the 3'end. For RNA-Seq "AGATCGGAAGAGCACACGTCTGAACTCCAGTCAC" and "AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA" needs to be trimmed from the 3'end of read 1 and read 2 respectivelly.

treatment_protocol: NFLAG-hFUSWT or NFLAG-hFUSR495X were expressed in ES cell derived neurons by lentivirus system and cells were treated with DOX to induce expression of the exogenous protein along with Geneticin to select the cells infected with virus. Control cells had no treatment.

value: ES cell derived neurons

tag: strain

tag: antibody

tag: molecule type

value: FUSR495X bound RNA