title: ChIP-seq from neural progenitor cell (ENCLB918HEV)

description:
https://www.encodeproject.org/experiments/ENCSR661MUS/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR661MUS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB918HEV
size range: 200-600
nucleic acid starting quantity: 253.5
nucleic acid starting quantity units: ng

value: neural progenitor cell

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: Richard Myers, HAIB

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/


title: ChIP-seq from HepG2 (ENCLB630UQV)

status: Public on Mar 12 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR669LCD/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR669LCD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR633UAP
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB630UQV

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ATF4 fusion protein

tag: antibody

tag: line

value: immortalized cell line

tag: biosample encode accession

tag: dev stage

value: child

tag: Sex

value: male

tag: age

value: 15 year

tag: health state

value: hepatocellular carcinoma

tag: lab

tag: link

value: ENCBS049KBY at ENCODE; https://www.encodeproject.org/ENCBS049KBY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB104IWE)

description:
https://www.encodeproject.org/experiments/ENCSR668LDD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR668LDD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000AKY
encode release date: 2016-11-08
lab: Bradley Bernstein, Broad
library encode accession: ENCLB104IWE
size range: 200-600

source_name: Homo sapiens K562 immortalized cell line

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Bradley Bernstein, Broad

value: ENCBS619VEE at ENCODE; https://www.encodeproject.org/ENCBS619VEE/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HepG2 (ENCLB577TON)

description:
https://www.encodeproject.org/experiments/ENCSR670YPQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR670YPQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB577TON

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-DMAP1 fusion protein, N-terminal FLAG-DMAP1 fusion protein

value: Richard Myers, HAIB

value: ENCBS237GPB at ENCODE; https://www.encodeproject.org/ENCBS237GPB/


title: ChIP-seq from SK-N-SH (ENCLB334NTR)

description:
https://www.encodeproject.org/experiments/ENCSR657OGA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR657OGA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB334NTR
size range: 200-600

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: immortalized cell line

value: 4 year

value: ENCBS500EWH at ENCODE; https://www.encodeproject.org/ENCBS500EWH/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from HepG2 (ENCLB205CFU)

description:
https://www.encodeproject.org/experiments/ENCSR666QNP/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR666QNP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB205CFU

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-TEAD3 fusion protein, N-terminal FLAG-TEAD3 fusion protein

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS806DHA at ENCODE; https://www.encodeproject.org/ENCBS806DHA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB613LLX)

description:
https://www.encodeproject.org/experiments/ENCSR669LCD/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR669LCD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR633UAP
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB613LLX

value: ENCBS743RUU at ENCODE; https://www.encodeproject.org/ENCBS743RUU/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from SK-N-SH (ENCLB385STB)

description:
https://www.encodeproject.org/experiments/ENCSR657OGA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR657OGA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2017-01-12
lab: Bradley Bernstein, Broad
library encode accession: ENCLB385STB
size range: 200-600

value: female

value: Bradley Bernstein, Broad

value: ENCBS324TZB at ENCODE; https://www.encodeproject.org/ENCBS324TZB/


title: ChIP-seq from HepG2 (ENCLB592IAP)

description:
https://www.encodeproject.org/experiments/ENCSR662EOU/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR662EOU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB592IAP

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-NR2F1 fusion protein, C-terminal FLAG-NR2F1 fusion protein

value: Richard Myers, HAIB

value: ENCBS653OWD at ENCODE; https://www.encodeproject.org/ENCBS653OWD/


title: ChIP-seq from esophagus squamous epithelium (ENCLB358KPP)

description:
https://www.encodeproject.org/experiments/ENCSR652EPR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR652EPR
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB358KPP
size range: 200-600

source_name: Homo sapiens esophagus squamous epithelium tissue female adult (53 years)

value: Control

value: esophagus squamous epithelium

value: tissue

tag: description

value: EnTEX:Esophagus - Mucosa

value: adult

value: 53 year

value: ENCBS054JUC at ENCODE; https://www.encodeproject.org/ENCBS054JUC/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from HCT116 (ENCLB033YIR)

description:
https://www.encodeproject.org/experiments/ENCSR661KMA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR661KMA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198WIH
encode release date: 2016-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB033YIR
size range: 200-600

source_name: Homo sapiens HCT116 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/ab9a4628-0877-468f-bdfe-78aada2fdb96/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v8.2_exp.pdf

value: immortalized cell line

value: cells obtained from ATCC

value: unknown

value: male

value: colorectal carcinoma

value: ENCBS494OPB at ENCODE; https://www.encodeproject.org/ENCBS494OPB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/

value: ENCODE dbxrefs Cellosaurus CVCL_0291; http://web.expasy.org/cellosaurus/CVCL_0291

value: ATCC sample source; http://www.atcc.org/products/all/CCL-247.aspx#357C3571006A4259B64650D34DF19048


title: ChIP-seq from neural cell (ENCLB854PPS)

description:
https://www.encodeproject.org/experiments/ENCSR654VRX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR654VRX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB854PPS
size range: 200-600

source_name: Homo sapiens neural in vitro differentiated cells male embryo

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: healthy

tag: passage number

value: Bradley Bernstein, Broad

value: ENCBS737HIZ at ENCODE; https://www.encodeproject.org/ENCBS737HIZ/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from Loucy (ENCLB207WLH)

description:
https://www.encodeproject.org/experiments/ENCSR657RRI/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR657RRI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB207WLH
size range: 200-600

source_name: Homo sapiens Loucy immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/61c0d277-54c3-4e17-afcd-4059b22d89f6/@@download/attachment/ChIP_Protocol_For_Fresh_or_Frozen_Cells_v09.1.pdf

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: female

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: ENCBS708EFA at ENCODE; https://www.encodeproject.org/ENCBS708EFA/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from smooth muscle cell (ENCLB140OFC)

description:
https://www.encodeproject.org/experiments/ENCSR651JDA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR651JDA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB140OFC
size range: 200-600

source_name: Homo sapiens smooth muscle in vitro differentiated cells female embryo (5 days) derived from H9

value: smooth muscle cell

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: Richard Myers, HAIB

value: ENCBS780PCJ at ENCODE; https://www.encodeproject.org/ENCBS780PCJ/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from cardiac muscle cell (ENCLB137JEQ)

description:
https://www.encodeproject.org/experiments/ENCSR652QNW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR652QNW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR867SJE
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB137JEQ
size range: 200-600

source_name: Homo sapiens cardiac muscle in vitro differentiated cells fetal

value: cardiac muscle cell

value: in vitro differentiated cells

value: unknown

value: fetal

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS343AKO at ENCODE; https://www.encodeproject.org/ENCBS343AKO/

value: Derived from ENCODE donor ENCDO924HBJ; https://www.encodeproject.org/ENCDO924HBJ/


title: ChIP-seq from HepG2 (ENCLB572UAB)

description:
https://www.encodeproject.org/experiments/ENCSR662EOU/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR662EOU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB572UAB

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS873RPL at ENCODE; https://www.encodeproject.org/ENCBS873RPL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from smooth muscle cell (ENCLB046MKU)

description:
https://www.encodeproject.org/experiments/ENCSR651JDA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR651JDA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR729MRJ
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB046MKU
size range: 200-600
nucleic acid starting quantity: 502.5
nucleic acid starting quantity units: ng

value: smooth muscle cell

value: Frozen or fixed, in vitro differentiated smooth muscle cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: Richard Myers, HAIB

value: ENCBS899TTJ at ENCODE; https://www.encodeproject.org/ENCBS899TTJ/


title: ChIP-seq from Loucy (ENCLB778YGU)

description:
https://www.encodeproject.org/experiments/ENCSR657RRI/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR657RRI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB778YGU
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/eaafee87-23f3-4bb4-adb1-585af01db120/@@download/attachment/ChIP%20New%20General%20ChIP%20Protocol%20041510%20v05.pdf

value: Loucy

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: Bradley Bernstein, Broad

value: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from neural progenitor cell (ENCLB850PHM)

description:
https://www.encodeproject.org/experiments/ENCSR645BCH/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR645BCH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB850PHM
size range: 200-600

source_name: Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from Loucy (ENCLB836SPU)

description:
https://www.encodeproject.org/experiments/ENCSR657RRI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR657RRI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB836SPU
size range: 200-600

value: immortalized cell line

value: female

value: ENCBS708EFA at ENCODE; https://www.encodeproject.org/ENCBS708EFA/


title: ChIP-seq from induced pluripotent stem cell (ENCLB160QBL)

description:
https://www.encodeproject.org/experiments/ENCSR657DYL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR657DYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2016-07-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB160QBL
size range: 200-600
nucleic acid starting quantity: 72.25
nucleic acid starting quantity units: ng

source_name: Homo sapiens induced pluripotent stem cell line male adult (53 years) derived from fibroblast of arm

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: male

value: Thomas Gingeras, CSHL

value: ENCBS373AAA at ENCODE; https://www.encodeproject.org/ENCBS373AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from HepG2 (ENCLB353UTG)

description:
https://www.encodeproject.org/experiments/ENCSR666QNP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR666QNP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB353UTG

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS648OFK at ENCODE; https://www.encodeproject.org/ENCBS648OFK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from neural progenitor cell (ENCLB624GCW)

description:
https://www.encodeproject.org/experiments/ENCSR645BCH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR645BCH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB624GCW
size range: 200-600
nucleic acid starting quantity: 212.3
nucleic acid starting quantity units: ng

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from induced pluripotent stem cell (ENCLB770UYZ)

description:
https://www.encodeproject.org/experiments/ENCSR657DYL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR657DYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR773IYZ
encode release date: 2016-07-28
lab: Bradley Bernstein, Broad
library encode accession: ENCLB770UYZ
size range: 200-600

value: induced pluripotent stem cell

value: induced pluripotent stem cell line

value: These are induced pluripotent stem cells (iPSC) created from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS368AAA at ENCODE; https://www.encodeproject.org/ENCBS368AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F182; http://web.expasy.org/cellosaurus/CVCL_F182


title: ChIP-seq from induced pluripotent stem cell (ENCLB042OLW)

description:
https://www.encodeproject.org/experiments/ENCSR655HDE/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on PGP1 iPSC-human (fragmentation date:2015-09-03)
experiment encode accession: ENCSR655HDE
assay title: ChIP-seq
encode release date: 2016-01-14
lab: Richard Myers, HAIB
library encode accession: ENCLB042OLW

value: Control

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23338&PgId=166


title: ChIP-seq from HepG2 (ENCLB897LMO)

description:
https://www.encodeproject.org/experiments/ENCSR656JZL/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR656JZL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB897LMO

source_name: Homo sapiens HepG2 immortalized cell line stably expressing N-terminal FLAG-HHEX fusion protein, C-terminal FLAG-HHEX fusion protein

value: FLAG-HHEX

value: immortalized cell line

value: A standard Myers lab growth of HepG2, hepatocellular carcinoma

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS882YXM at ENCODE; https://www.encodeproject.org/ENCBS882YXM/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB845OWQ)

description:
https://www.encodeproject.org/experiments/ENCSR656JZL/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR656JZL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB845OWQ

value: male

value: ENCBS895HRB at ENCODE; https://www.encodeproject.org/ENCBS895HRB/


title: ChIP-seq from MCF-7 (ENCLB855NYW)

description:
https://www.encodeproject.org/experiments/ENCSR639RHG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR639RHG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB855NYW
size range: 200-600

source_name: Homo sapiens MCF-7 immortalized cell line

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: adult

value: female

value: breast cancer (adenocarcinoma)

value: Bradley Bernstein, Broad

value: ENCBS967MVZ at ENCODE; https://www.encodeproject.org/ENCBS967MVZ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from thyroid gland (ENCLB301QVT)

description:
https://www.encodeproject.org/experiments/ENCSR639NMN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR639NMN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR164POT
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB301QVT
size range: 200-600
nucleic acid starting quantity: 2273.7
nucleic acid starting quantity units: ng

source_name: Homo sapiens thyroid gland tissue male adult (54 years)

value: thyroid gland

value: tissue

value: 54 year

value: ENCBS050AKF at ENCODE; https://www.encodeproject.org/ENCBS050AKF/

value: Derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from cardiac muscle cell (ENCLB932FMT)

description:
https://www.encodeproject.org/experiments/ENCSR652QNW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR652QNW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR867SJE
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB932FMT
size range: 200-600

value: cardiac muscle cell

value: in vitro differentiated cells

value: unknown

value: fetal

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS806KLM at ENCODE; https://www.encodeproject.org/ENCBS806KLM/

value: Derived from ENCODE donor ENCDO924HBJ; https://www.encodeproject.org/ENCDO924HBJ/


title: ChIP-seq from neural cell (ENCLB185EKP)

description:
https://www.encodeproject.org/experiments/ENCSR654VRX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR654VRX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB185EKP
size range: 300-800

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf

value: neural cell

value: embryonic

value: male

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS504GFW at ENCODE; https://www.encodeproject.org/ENCBS504GFW/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from thyroid gland (ENCLB306HEK)

description:
https://www.encodeproject.org/experiments/ENCSR639NMN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR639NMN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR164POT
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB306HEK
size range: 200-600
nucleic acid starting quantity: 2273.7
nucleic acid starting quantity units: ng

value: thyroid gland

value: tissue

value: adult

value: 54 year

value: ENCBS050AKF at ENCODE; https://www.encodeproject.org/ENCBS050AKF/


title: ChIP-seq from HepG2 (ENCLB737QEO)

description:
https://www.encodeproject.org/experiments/ENCSR654ORQ/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR654ORQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB737QEO

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-SLC30A9 fusion protein

value: immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS650IHX at ENCODE; https://www.encodeproject.org/ENCBS650IHX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB182TIC)

description:
https://www.encodeproject.org/experiments/ENCSR654ORQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR654ORQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB182TIC

value: male

value: ENCBS145OEE at ENCODE; https://www.encodeproject.org/ENCBS145OEE/


title: ChIP-seq from hepatocyte (ENCLB693LRT)

description:
https://www.encodeproject.org/experiments/ENCSR637RLN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR637RLN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB693LRT
size range: 200-600
nucleic acid starting quantity: 27.5
nucleic acid starting quantity units: ng

source_name: Homo sapiens hepatocyte in vitro differentiated cells female embryo (5 days) derived from H9

value: hepatocyte

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated hepatocyte-like cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS520VFV at ENCODE; https://www.encodeproject.org/ENCBS520VFV/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from hepatocyte (ENCLB505SWB)

description:
https://www.encodeproject.org/experiments/ENCSR637RLN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR637RLN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB505SWB
size range: 200-600

value: ENCBS077RUJ at ENCODE; https://www.encodeproject.org/ENCBS077RUJ/


title: ChIP-seq from hepatocyte (ENCLB414PSR)

description:
https://www.encodeproject.org/experiments/ENCSR637RLN/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR637RLN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR107PGG
encode release date: 2016-05-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB414PSR
size range: 200-600
nucleic acid starting quantity: 18.26
nucleic acid starting quantity units: ng


title: ChIP-seq from Loucy (ENCLB522STG)

description:
https://www.encodeproject.org/experiments/ENCSR648HLP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR648HLP
assay title: ChIP-seq
encode release date: 2014-11-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB522STG
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

extract_protocol: not provided

value: Control

value: Loucy

value: immortalized cell line

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: Bradley Bernstein, Broad

value: ENCBS708EFA at ENCODE; https://www.encodeproject.org/ENCBS708EFA/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from Loucy (ENCLB703DVX)

description:
https://www.encodeproject.org/experiments/ENCSR648HLP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR648HLP
assay title: ChIP-seq
encode release date: 2014-11-20
lab: Bradley Bernstein, Broad
library encode accession: ENCLB703DVX
size range: 200-600

value: female

value: ENCBS080PZG at ENCODE; https://www.encodeproject.org/ENCBS080PZG/


title: ChIP-seq from HepG2 (ENCLB240WIN)

description:
https://www.encodeproject.org/experiments/ENCSR649FPL/
***************
biological replicate number: 5
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human HepG2 (fragmentation date 07-22-13)
experiment encode accession: ENCSR649FPL
assay title: ChIP-seq
encode release date: 2014-04-04
lab: Richard Myers, HAIB
library encode accession: ENCLB240WIN

source_name: Homo sapiens HepG2 immortalized cell line

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

value: HepG2, hepatocellular carcinoma

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS485OKN at ENCODE; https://www.encodeproject.org/ENCBS485OKN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from OCI-LY3 (ENCLB380HOF)

description:
https://www.encodeproject.org/experiments/ENCSR629TDG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR629TDG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR361GKY
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB380HOF
size range: 200-600

source_name: Homo sapiens OCI-LY3 immortalized cell line

value: immortalized cell line

value: Oci-Ly-3- Immortalized diffuse large B cell lymphoma cell line developed at the Ontario Cancer Institute

value: 52 year

value: adult

value: B cell lymphoma

value: Bradley Bernstein, Broad

value: ENCBS018GXW at ENCODE; https://www.encodeproject.org/ENCBS018GXW/

value: Derived from ENCODE donor ENCDO355AAA; https://www.encodeproject.org/ENCDO355AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_8800; http://web.expasy.org/cellosaurus/CVCL_8800


title: ChIP-seq from vagina (ENCLB485MWR)

description:
https://www.encodeproject.org/experiments/ENCSR620XWM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR620XWM
assay title: ChIP-seq
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB485MWR
size range: 200-600

source_name: Homo sapiens vagina tissue female adult (53 years)

value: Control

value: vagina

value: tissue

value: female

value: 53 year

value: ENCBS047TWL at ENCODE; https://www.encodeproject.org/ENCBS047TWL/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from OCI-LY3 (ENCLB086LIF)

description:
https://www.encodeproject.org/experiments/ENCSR629TDG/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR629TDG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR361GKY
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB086LIF
size range: 300-600

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/18f0d330-5799-45f7-babe-7728dfbd1103/@@download/attachment/Epigenomics_Mag%20Bead_ChIP_Protocol_v01.4_exp.pdf

value: male

value: ENCBS757GPD at ENCODE; https://www.encodeproject.org/ENCBS757GPD/


title: ChIP-seq from neural progenitor cell (ENCLB736ZNB)

description:
https://www.encodeproject.org/experiments/ENCSR645BCH/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR645BCH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-06-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB736ZNB
size range: 200-600

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: healthy

value: Richard Myers, HAIB

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from fibroblast of arm (ENCLB839ROY)

description:
https://www.encodeproject.org/experiments/ENCSR611CRY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR611CRY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB839ROY
size range: 200-600
nucleic acid starting quantity: 51.5
nucleic acid starting quantity units: ng

source_name: Homo sapiens fibroblast of arm primary cell male adult (53 years)

value: fibroblast of arm

value: primary cell

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS372AAA at ENCODE; https://www.encodeproject.org/ENCBS372AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from esophagus muscularis mucosa (ENCLB795ZFO)

description:
https://www.encodeproject.org/experiments/ENCSR607ARN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR607ARN
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR474WLZ
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB795ZFO
size range: 200-600

source_name: Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)

value: esophagus muscularis mucosa

value: tissue

value: EnTEX:Esophagus - Muscularis

value: female

value: 53 year

value: Bradley Bernstein, Broad

value: ENCBS071FUE at ENCODE; https://www.encodeproject.org/ENCBS071FUE/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from MCF-7 (ENCLB730SMK)

description:
https://www.encodeproject.org/experiments/ENCSR639RHG/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR639RHG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR768LHG
encode release date: 2017-01-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB730SMK
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: immortalized cell line

value: mammary epithelium, doubling time ~ 29hoursATCC HTB-22

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS789UPK at ENCODE; https://www.encodeproject.org/ENCBS789UPK/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/products/all/HTB-22.aspx


title: ChIP-seq from K562 (ENCLB933EGX)

description:
https://www.encodeproject.org/experiments/ENCSR642VZY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR642VZY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR000FCA
encode release date: 2016-04-01
lab: Richard Myers, HAIB
library encode accession: ENCLB933EGX

source_name: Homo sapiens K562 immortalized cell line

value: K562, myelogenous leukemia

value: adult

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS577JGM at ENCODE; https://www.encodeproject.org/ENCBS577JGM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from esophagus muscularis mucosa (ENCLB110TIV)

description:
https://www.encodeproject.org/experiments/ENCSR607ARN/
***************
biological replicate number: 2
technical replicate number: 2
description:
experiment encode accession: ENCSR607ARN
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR474WLZ
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB110TIV
size range: 200-600

value: esophagus muscularis mucosa

value: tissue

value: EnTEX:Esophagus - Muscularis

value: female

value: 53 year

value: Bradley Bernstein, Broad

value: ENCBS071FUE at ENCODE; https://www.encodeproject.org/ENCBS071FUE/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from HepG2 (ENCLB549TLT)

description:
https://www.encodeproject.org/experiments/ENCSR639IIZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR639IIZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB549TLT

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-CEBPG fusion protein, N-terminal FLAG-CEBPG fusion protein

value: FLAG-CEBPG

value: immortalized cell line

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS264HEZ at ENCODE; https://www.encodeproject.org/ENCBS264HEZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from neural progenitor cell (ENCLB187GJN)

description:
https://www.encodeproject.org/experiments/ENCSR603SVD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR603SVD
assay title: ChIP-seq
encode release date: 2016-05-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB187GJN
size range: 200-600

value: Control

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: healthy

value: Richard Myers, HAIB

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from Karpas-422 (ENCLB843KES)

description:
https://www.encodeproject.org/experiments/ENCSR604III/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR604III
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR367UDO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB843KES
size range: 200-600

source_name: Homo sapiens Karpas-422 immortalized cell line

value: immortalized cell line

value: Karpas422- Human B cell non-Hodgkin lymphoma

value: 73 year

value: adult

value: female

value: human B cell non-Hodgkin's lymphoma

value: Bradley Bernstein, Broad

value: ENCBS301UOD at ENCODE; https://www.encodeproject.org/ENCBS301UOD/

value: Derived from ENCODE donor ENCDO354AAA; https://www.encodeproject.org/ENCDO354AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1325; http://web.expasy.org/cellosaurus/CVCL_1325


title: ChIP-seq from HepG2 (ENCLB761LFL)

description:
https://www.encodeproject.org/experiments/ENCSR633UAP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2-human (fragmentation date:2015-08-12
experiment encode accession: ENCSR633UAP
assay title: ChIP-seq
encode release date: 2016-06-13
lab: Richard Myers, HAIB
library encode accession: ENCLB761LFL

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-ATF4 fusion protein

value: Control

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS743RUU at ENCODE; https://www.encodeproject.org/ENCBS743RUU/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HepG2 (ENCLB582SNX)

description:
https://www.encodeproject.org/experiments/ENCSR639IIZ/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR639IIZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB582SNX

value: FLAG-CEBPG

value: immortalized cell line

value: Richard Myers, HAIB

value: ENCBS599NTX at ENCODE; https://www.encodeproject.org/ENCBS599NTX/


title: ChIP-seq from neural progenitor cell (ENCLB732LOO)

description:
https://www.encodeproject.org/experiments/ENCSR603SVD/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR603SVD
assay title: ChIP-seq
encode release date: 2016-05-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB732LOO
size range: 200-600

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from SK-N-SH (ENCLB033YFV)

description:
https://www.encodeproject.org/experiments/ENCSR661BMA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR661BMA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2016-11-25
lab: Bradley Bernstein, Broad
library encode accession: ENCLB033YFV
size range: 200-600

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: 4 year

value: child

value: Bradley Bernstein, Broad

value: ENCBS018DDZ at ENCODE; https://www.encodeproject.org/ENCBS018DDZ/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from neural progenitor cell (ENCLB401NZN)

description:
https://www.encodeproject.org/experiments/ENCSR603SVD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR603SVD
assay title: ChIP-seq
encode release date: 2016-05-26
lab: Bradley Bernstein, Broad
library encode accession: ENCLB401NZN
size range: 200-600

source_name: Homo sapiens neural progenitor in vitro differentiated cells female embryo (5 days) derived from H9

value: Control

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: Richard Myers, HAIB

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/


title: ChIP-seq from K562 (ENCLB631SCB)

description:
https://www.encodeproject.org/experiments/ENCSR633EIC/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR633EIC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000FCA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB631SCB

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal FLAG-PBX2 fusion protein

value: immortalized cell line

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS456EWO at ENCODE; https://www.encodeproject.org/ENCBS456EWO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB825IHB)

description:
https://www.encodeproject.org/experiments/ENCSR633EIC/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on K562
experiment encode accession: ENCSR633EIC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000FCA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB825IHB

value: female

value: ENCBS283TEI at ENCODE; https://www.encodeproject.org/ENCBS283TEI/


title: ChIP-seq from HepG2 (ENCLB077XDH)

description:
https://www.encodeproject.org/experiments/ENCSR633OVO/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR633OVO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB077XDH

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS447ONX at ENCODE; https://www.encodeproject.org/ENCBS447ONX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from thyroid gland (ENCLB246KYO)

description:
https://www.encodeproject.org/experiments/ENCSR597BWL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR597BWL
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR777VQP
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB246KYO
size range: 200-600

source_name: Homo sapiens thyroid gland tissue male adult (37 years)

value: thyroid gland

value: tissue

value: 37 year

value: Bradley Bernstein, Broad

value: ENCBS522TJW at ENCODE; https://www.encodeproject.org/ENCBS522TJW/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from neural progenitor cell (ENCLB613CDJ)

description:
https://www.encodeproject.org/experiments/ENCSR591KSN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR591KSN
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR603SVD
encode release date: 2016-11-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB613CDJ
size range: 200-600
nucleic acid starting quantity: 27.5
nucleic acid starting quantity units: ng

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: healthy

value: Richard Myers, HAIB

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from liver (ENCLB594RUV)

description:
https://www.encodeproject.org/experiments/ENCSR628ONI/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on STL011-human (fragmentation date: 2014-09-15)
experiment encode accession: ENCSR628ONI
assay title: ChIP-seq
encode release date: 2016-01-29
lab: Richard Myers, HAIB
library encode accession: ENCLB594RUV

source_name: Homo sapiens liver tissue male adult (32 years)

value: Control

value: liver

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from esophagus muscularis mucosa (ENCLB703EHZ)

description:
https://www.encodeproject.org/experiments/ENCSR607ARN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR607ARN
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR474WLZ
encode release date: 2016-11-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB703EHZ
size range: 200-600

value: esophagus muscularis mucosa

value: tissue

value: EnTEX:Esophagus - Muscularis

value: female

value: 53 year

value: Bradley Bernstein, Broad

value: ENCBS071FUE at ENCODE; https://www.encodeproject.org/ENCBS071FUE/

value: Derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from GM12878 (ENCLB416GRB)

description:
https://www.encodeproject.org/experiments/ENCSR626VUC/
***************
biological replicate number: 2
technical replicate number: 1
description: ETV6 ChIP-seq on human GM12878
experiment encode accession: ENCSR626VUC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR596QDC, ENCSR360XQV
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB416GRB

source_name: Homo sapiens GM12878 immortalized cell line

extract_protocol:
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/6ecd8240-a351-479b-9de6-f09ca3702ac3/@@download/attachment/ChIP-seq_Protocol_v011014.pdf

value: immortalized cell line

value: GM12878, B-lymphocyte, lymphoblastoid.

value: unknown

value: Richard Myers, HAIB

value: ENCBS083XJQ at ENCODE; https://www.encodeproject.org/ENCBS083XJQ/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM12878&Product=CC


title: ChIP-seq from thyroid gland (ENCLB241YFI)

description:
https://www.encodeproject.org/experiments/ENCSR597BWL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR597BWL
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR777VQP
encode release date: 2016-05-23
lab: Bradley Bernstein, Broad
library encode accession: ENCLB241YFI
size range: 200-600

value: thyroid gland

value: adult

value: male

value: 37 year

value: ENCBS522TJW at ENCODE; https://www.encodeproject.org/ENCBS522TJW/

value: Derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from H9 (ENCLB504POG)

description:
https://www.encodeproject.org/experiments/ENCSR625CEM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR625CEM
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB504POG
size range: 300-1000

source_name: Homo sapiens H9 stem cell female embryo (5 days) stably expressing C-terminal eGFP-HES5 fusion protein

value: Control

value: stem cell

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter, Cells were cultured on mitotically inactivated mouse embryonic fibroblasts (MEFs) (Globalstem). Undifferentiated ES cells were maintained in medium containing DMEM/F12, 20% KSR, 1mM Glutamine, 1% Penicillin/Streptomycin, non essential amino acids and beta-mercaptoethanol. Undifferentiated ES cells were purified with pluripotency markers Tra-1-60 and PE-conjugated SSEA-3 (BD Pharmingen).

value: embryonic

value: female

value: 5 day

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS703ZDS at ENCODE; https://www.encodeproject.org/ENCBS703ZDS/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_9773; http://web.expasy.org/cellosaurus/CVCL_9773


title: ChIP-seq from K562 (ENCLB827EUW)

description:
https://www.encodeproject.org/experiments/ENCSR642VZY/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR642VZY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR700IEB, ENCSR000FCA
encode release date: 2016-04-01
lab: Richard Myers, HAIB
library encode accession: ENCLB827EUW

value: immortalized cell line

value: K562, myelogenous leukemia

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS602AAA at ENCODE; https://www.encodeproject.org/ENCBS602AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from H9 (ENCLB499ENQ)

description:
https://www.encodeproject.org/experiments/ENCSR625CEM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR625CEM
assay title: ChIP-seq
encode release date: 2015-08-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB499ENQ
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: Control

value: stem cell

value: HES5::eGFP BAC transgenic human ES cells (H9; WA-09; Wicell) expressing GFP under the HES5 promoter

value: embryonic

value: ENCBS769EPD at ENCODE; https://www.encodeproject.org/ENCBS769EPD/


title: ChIP-seq from endothelial cell of umbilical vein (ENCLB305XAQ)

description:
https://www.encodeproject.org/experiments/ENCSR578QSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR578QSO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000ALG
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB305XAQ
size range: 200-600

source_name: Homo sapiens endothelial of umbilical vein primary cell male (0 years)

value: endothelial cell of umbilical vein

value: primary cell

value: HUVEC Umbilical Vein Endothelial Primary Cells

value: unknown

value: male

value: 0 year

value: Bradley Bernstein, Broad

value: ENCBS741UNQ at ENCODE; https://www.encodeproject.org/ENCBS741UNQ/

value: Derived from ENCODE donor ENCDO551FXN; https://www.encodeproject.org/ENCDO551FXN/


title: ChIP-seq from A673 (ENCLB244JDS)

description:
https://www.encodeproject.org/experiments/ENCSR581PUR/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR581PUR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR196CXJ
encode release date: 2016-05-06
lab: Bradley Bernstein, Broad
library encode accession: ENCLB244JDS
size range: 200-600

source_name: Homo sapiens A673 immortalized cell line

value: immortalized cell line

value: Cell line is A673; this is a purchasable public domain cell type per Miguel Rivera, M.D.

value: female

value: 15 year

value: ENCBS615MBV at ENCODE; https://www.encodeproject.org/ENCBS615MBV/

value: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/

value: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080


title: ChIP-seq from endothelial cell of umbilical vein (ENCLB204VWR)

description:
https://www.encodeproject.org/experiments/ENCSR578QSO/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR578QSO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000ALG
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB204VWR
size range: 200-600

value: ENCBS859WPH at ENCODE; https://www.encodeproject.org/ENCBS859WPH/


title: ChIP-seq from GM12878 (ENCLB714KFE)

description:
https://www.encodeproject.org/experiments/ENCSR626VUC/
***************
biological replicate number: 1
technical replicate number: 1
description: ETV6 ChIP-seq on human GM12878
experiment encode accession: ENCSR626VUC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR596QDC, ENCSR360XQV
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB714KFE

value: GM12878, B-lymphocyte, lymphoblastoid

value: adult

value: Richard Myers, HAIB

value: ENCBS460NBS at ENCODE; https://www.encodeproject.org/ENCBS460NBS/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM12878&Product=CC


title: ChIP-seq from HepG2 (ENCLB070FLV)

description:
https://www.encodeproject.org/experiments/ENCSR575RRX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR575RRX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR055XHN
encode release date: 2016-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB070FLV
size range: 200-600

source_name: Homo sapiens HepG2 immortalized cell line

value: Hep G2 (Hepatocellular carcinoma, human) Hep G2 is a perpetual cell line which was derived from the liver tissue of a 15-year-old Caucasian American male with a well-differentiated hepatocellular carcinoma. These cells are epithelial in morphology, have a model chromosome number of 55, and are not tumorigenic in nude mice.

value: child

value: male

value: hepatocellular carcinoma

value: Bradley Bernstein, Broad

value: ENCBS957WYL at ENCODE; https://www.encodeproject.org/ENCBS957WYL/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB988VAO)

description:
https://www.encodeproject.org/experiments/ENCSR575RRX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR575RRX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR055XHN
encode release date: 2016-11-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB988VAO
size range: 200-600

value: immortalized cell line

value: 15 year

value: ENCBS295NFS at ENCODE; https://www.encodeproject.org/ENCBS295NFS/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from DOHH2 (ENCLB721SEI)

description:
https://www.encodeproject.org/experiments/ENCSR623GZY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR623GZY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR742WWB
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB721SEI
size range: 200-600
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens DOHH2 immortalized cell line

value: established from the pleural effusion of a 60-year-old man with refractory immunoblastic B cell lymphoma progressed from follicular centroblastic/centrocytic lymphoma in 1990

value: 60 year

value: adult

value: ENCBS652PBR at ENCODE; https://www.encodeproject.org/ENCBS652PBR/

value: Derived from ENCODE donor ENCDO352AAA; https://www.encodeproject.org/ENCDO352AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1179; http://web.expasy.org/cellosaurus/CVCL_1179


title: ChIP-seq from HepG2 (ENCLB019UPX)

description:
https://www.encodeproject.org/experiments/ENCSR633OVO/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR633OVO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB019UPX

value: Richard Myers, HAIB

value: ENCBS252JAW at ENCODE; https://www.encodeproject.org/ENCBS252JAW/


title: ChIP-seq from neural progenitor cell (ENCLB890WSL)

description:
https://www.encodeproject.org/experiments/ENCSR573CWZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR573CWZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-11-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB890WSL
size range: 200-600
nucleic acid starting quantity: 717.5
nucleic acid starting quantity units: ng

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro specified neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS018TPT at ENCODE; https://www.encodeproject.org/ENCBS018TPT/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from neural progenitor cell (ENCLB022NIZ)

description:
https://www.encodeproject.org/experiments/ENCSR573CWZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR573CWZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR603SVD
encode release date: 2016-11-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB022NIZ
size range: 200-600

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/


title: ChIP-seq from Loucy (ENCLB951NDV)

description:
https://www.encodeproject.org/experiments/ENCSR566GSO/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR566GSO
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR648HLP
encode release date: 2014-09-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB951NDV
size range: 200-600

source_name: Homo sapiens Loucy immortalized cell line

value: Loucy

value: immortalized cell line

value: Established in 1987 from the peripheral blood of a patient with T-cell acute lymphoblastic leukemia (T-ALL) obtained two months prior to her death. May be of value in evaluating the role of t(16;20) in the etiology of T-ALL.

value: adult

value: 38 year

value: T-cell acute lymphoblastic leukemia cell line ATCC CRL-2629

value: Bradley Bernstein, Broad

value: ENCBS170DPY at ENCODE; https://www.encodeproject.org/ENCBS170DPY/

value: Derived from ENCODE donor ENCDO732PDS; https://www.encodeproject.org/ENCDO732PDS/

value: ENCODE dbxrefs Cellosaurus CVCL_1380; http://web.expasy.org/cellosaurus/CVCL_1380

value: ATCC sample source; http://www.atcc.org/Products/All/CRL-2629.aspx


title: ChIP-seq from bipolar spindle neuron (ENCLB596GLA)

description:
https://www.encodeproject.org/experiments/ENCSR619IUE/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on biopolar spindle neuron
experiment encode accession: ENCSR619IUE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR170WVI, ENCSR138PGW
encode release date: 2016-10-27
lab: Richard Myers, HAIB
library encode accession: ENCLB596GLA

source_name: Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell

value: CTCF

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: male

value: Thomas Gingeras, CSHL

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from PC-3 (ENCLB582WFP)

description:
https://www.encodeproject.org/experiments/ENCSR566UMF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR566UMF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR328AHC
encode release date: 2016-05-03
lab: Bradley Bernstein, Broad
library encode accession: ENCLB582WFP
size range: 300-600
nucleic acid starting quantity: 111.18
nucleic acid starting quantity units: ng

source_name: Homo sapiens PC-3 immortalized cell line

value: immortalized cell line

value: prostate cancer cell line

value: adult

value: 62 year

value: grade IV, adenocarcinoma

value: ENCBS596CTT at ENCODE; https://www.encodeproject.org/ENCBS596CTT/

value: Derived from ENCODE donor ENCDO349AAA; https://www.encodeproject.org/ENCDO349AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0035; http://web.expasy.org/cellosaurus/CVCL_0035

value: ATCC sample source; http://www.atcc.org/products/all/CRL-1435.aspx


title: ChIP-seq from HepG2 (ENCLB168WKQ)

description:
https://www.encodeproject.org/experiments/ENCSR616OSG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR616OSG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB168WKQ

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-KLF11 fusion protein

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS652ZUQ at ENCODE; https://www.encodeproject.org/ENCBS652ZUQ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from HepG2 (ENCLB209BQN)

description:
https://www.encodeproject.org/experiments/ENCSR616OSG/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR616OSG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR239QGH
encode release date: 2016-11-08
lab: Richard Myers, HAIB
library encode accession: ENCLB209BQN

value: male

value: ENCBS028PTH at ENCODE; https://www.encodeproject.org/ENCBS028PTH/


title: ChIP-seq from DND-41 (ENCLB583BNU)

description:
https://www.encodeproject.org/experiments/ENCSR564VIX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR564VIX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000ASA
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB583BNU
size range: 200-600

source_name: Homo sapiens DND-41 immortalized cell line

value: immortalized cell line

value: 13 year

value: unknown

value: Bradley Bernstein, Broad

value: ENCBS688JZQ at ENCODE; https://www.encodeproject.org/ENCBS688JZQ/

value: Derived from ENCODE donor ENCDO183AAA; https://www.encodeproject.org/ENCDO183AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_2022; http://web.expasy.org/cellosaurus/CVCL_2022


title: ChIP-seq from neural progenitor cell (ENCLB419HIC)

description:
https://www.encodeproject.org/experiments/ENCSR591KSN/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR591KSN
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR603SVD
encode release date: 2016-11-14
lab: Bradley Bernstein, Broad
library encode accession: ENCLB419HIC
size range: 200-600

value: neural progenitor cell

value: in vitro differentiated cells

value: Frozen or fixed, in vitro differentiated neural progenitor cells from ES WA09 (H9) by the SESCC for use by the ENCODE consortia

value: 5 day

value: embryonic

value: female

value: healthy

value: ENCBS044KWE at ENCODE; https://www.encodeproject.org/ENCBS044KWE/

value: Derived from ENCODE donor ENCDO222AAA; https://www.encodeproject.org/ENCDO222AAA/


title: ChIP-seq from DND-41 (ENCLB965XUW)

description:
https://www.encodeproject.org/experiments/ENCSR564VIX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR564VIX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000ASA
encode release date: 2016-11-16
lab: Bradley Bernstein, Broad
library encode accession: ENCLB965XUW
size range: 200-600

value: not collected

value: ENCBS439IWV at ENCODE; https://www.encodeproject.org/ENCBS439IWV/

value: Derived from ENCODE donor ENCDO280SVM; https://www.encodeproject.org/ENCDO280SVM/


title: ChIP-seq from MM.1S (ENCLB617IOF)

description:
https://www.encodeproject.org/experiments/ENCSR562SRW/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR562SRW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB617IOF
size range: 300-600
nucleic acid starting quantity: 10.268
nucleic acid starting quantity units: ng

source_name: Homo sapiens MM.1S immortalized cell line

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: adult

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS205VYW at ENCODE; https://www.encodeproject.org/ENCBS205VYW/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from SK-N-SH (ENCLB477OQI)

description:
https://www.encodeproject.org/experiments/ENCSR564IGJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR564IGJ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR185OHN
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB477OQI
size range: 200-600

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: 4 year

value: child

value: Bradley Bernstein, Broad

value: ENCBS324TZB at ENCODE; https://www.encodeproject.org/ENCBS324TZB/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/

value: ENCODE dbxrefs Cellosaurus CVCL_0531; http://web.expasy.org/cellosaurus/CVCL_0531


title: ChIP-seq from HepG2 (ENCLB841CSP)

description:
https://www.encodeproject.org/experiments/ENCSR616WEG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR616WEG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB841CSP

source_name: Homo sapiens HepG2 immortalized cell line stably expressing C-terminal FLAG-HBP1 fusion protein

value: male

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS181KHF at ENCODE; https://www.encodeproject.org/ENCBS181KHF/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from fibroblast of arm (ENCLB212YPI)

description:
https://www.encodeproject.org/experiments/ENCSR611CRY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR611CRY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB212YPI
size range: 200-600
nucleic acid starting quantity: 66.25
nucleic acid starting quantity units: ng

source_name: Homo sapiens fibroblast of arm primary cell male adult (53 years)

value: fibroblast of arm

value: primary cell

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: Thomas Gingeras, CSHL

value: ENCBS367AAA at ENCODE; https://www.encodeproject.org/ENCBS367AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from neural cell (ENCLB354PZC)

description:
https://www.encodeproject.org/experiments/ENCSR608VNA/
***************
biological replicate number: 1
technical replicate number: 2
description:
experiment encode accession: ENCSR608VNA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB354PZC
size range: 300-800

source_name: Homo sapiens neural in vitro differentiated cells male embryo

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: male

value: unknown

value: healthy

value: Bradley Bernstein, Broad

value: ENCBS504GFW at ENCODE; https://www.encodeproject.org/ENCBS504GFW/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from MM.1S (ENCLB599YHB)

description:
https://www.encodeproject.org/experiments/ENCSR562SRW/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR562SRW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR264HOB
encode release date: 2016-10-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB599YHB
size range: 300-600
nucleic acid starting quantity: 4.726
nucleic acid starting quantity units: ng

value: immortalized cell line

value: The parent cell line, MM.1, was established from peripheral blood of a multiple myeloma patient who had become resistant to steroid-based therapy. this line is sensitive to dexamethasone

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS981ZAE at ENCODE; https://www.encodeproject.org/ENCBS981ZAE/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: ChIP-seq from HepG2 (ENCLB534XPF)

description:
https://www.encodeproject.org/experiments/ENCSR616WEG/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HepG2
experiment encode accession: ENCSR616WEG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR346XJA
encode release date: 2016-06-14
lab: Richard Myers, HAIB
library encode accession: ENCLB534XPF

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS573OLZ at ENCODE; https://www.encodeproject.org/ENCBS573OLZ/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from liver (ENCLB917GEI)

description:
https://www.encodeproject.org/experiments/ENCSR621CSR/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on STL011-human (fragmentation date: 2015-01-29)
experiment encode accession: ENCSR621CSR
assay title: ChIP-seq
encode release date: 2016-01-29
lab: Richard Myers, HAIB
library encode accession: ENCLB917GEI

source_name: Homo sapiens liver tissue male adult (32 years)

value: Control

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: male

value: healthy with non-obstructive CAD (coronary artery disease)

value: Thomas Gingeras, CSHL

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from NCI-H929 (ENCLB427UUV)

description:
https://www.encodeproject.org/experiments/ENCSR562JTY/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR562JTY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB427UUV
size range: 200-600

source_name: Homo sapiens NCI-H929 immortalized cell line

value: immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: female

value: 62 year

value: multiple myeloma

value: Bradley Bernstein, Broad

value: ENCBS571AQH at ENCODE; https://www.encodeproject.org/ENCBS571AQH/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from neural cell (ENCLB922CKK)

description:
https://www.encodeproject.org/experiments/ENCSR608VNA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR608VNA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB922CKK
size range: 200-600

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: unknown

value: healthy

value: ENCBS737HIZ at ENCODE; https://www.encodeproject.org/ENCBS737HIZ/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from NCI-H929 (ENCLB727HCL)

description:
https://www.encodeproject.org/experiments/ENCSR562JTY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR562JTY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2016-10-19
lab: Bradley Bernstein, Broad
library encode accession: ENCLB727HCL
size range: 200-600

value: adult

value: ENCBS197CBA at ENCODE; https://www.encodeproject.org/ENCBS197CBA/


title: ChIP-seq from bipolar spindle neuron (ENCLB041MNB)

description:
https://www.encodeproject.org/experiments/ENCSR619IUE/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on biopolar spindle neuron
experiment encode accession: ENCSR619IUE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR170WVI, ENCSR138PGW
encode release date: 2016-10-27
lab: Richard Myers, HAIB
library encode accession: ENCLB041MNB

value: CTCF

value: bipolar spindle neuron

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: male

value: Thomas Gingeras, CSHL

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: ChIP-seq from Karpas-422 (ENCLB981FZC)

description:
https://www.encodeproject.org/experiments/ENCSR604III/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR604III
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR367UDO
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB981FZC
size range: 200-600

source_name: Homo sapiens Karpas-422 immortalized cell line

value: immortalized cell line

value: Karpas422- Human B cell non-Hodgkin lymphoma

value: 73 year

value: female

value: human B cell non-Hodgkin's lymphoma

value: Bradley Bernstein, Broad

value: ENCBS850UIV at ENCODE; https://www.encodeproject.org/ENCBS850UIV/

value: Derived from ENCODE donor ENCDO354AAA; https://www.encodeproject.org/ENCDO354AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1325; http://web.expasy.org/cellosaurus/CVCL_1325


title: ChIP-seq from liver (ENCLB201OJR)

description:
https://www.encodeproject.org/experiments/ENCSR601OGE/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on HNF4A-human
experiment encode accession: ENCSR601OGE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR931XLP, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB201OJR

value: liver

value: tissue

value: Human liver Tissue obtained from a healthy, 32 year old Caucasian male donor

value: 32 year

value: adult

value: healthy with non-obstructive CAD (coronary artery disease)

value: ENCBS046RNA at ENCODE; https://www.encodeproject.org/ENCBS046RNA/

value: Derived from ENCODE donor ENCDO060AAA; https://www.encodeproject.org/ENCDO060AAA/

value: ENCODE dbxrefs Liver_STL011; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Liver_STL011


title: ChIP-seq from neutrophil (ENCLB119HLI)

description:
https://www.encodeproject.org/experiments/ENCSR557RDB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR557RDB
assay title: ChIP-seq
encode release date: 2016-11-17
lab: Bradley Bernstein, Broad
library encode accession: ENCLB119HLI
size range: 200-600

source_name: Homo sapiens neutrophil primary cell

value: Control

value: neutrophil

value: primary cell

value: Neutrophils were isolated by centrifuging heparinized venous blood over Histopaque 1119 (Sigma-Aldrich) and subsequently over a discontinuous Percoll (Amersham Biosciences) gradient.  Cells provided by Max Planck Institute for Infection Biology, Berlin

value: unknown

value: not collected

value: ENCBS360EQL at ENCODE; https://www.encodeproject.org/ENCBS360EQL/

value: Derived from ENCODE donor ENCDO055UKA; https://www.encodeproject.org/ENCDO055UKA/


title: ChIP-seq from liver (ENCLB015ADX)

description:
https://www.encodeproject.org/experiments/ENCSR601OGE/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on HNF4A-human
experiment encode accession: ENCSR601OGE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR931XLP, ENCSR019XRC
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB015ADX

value: liver

value: male

value: Thomas Gingeras, CSHL


title: ChIP-seq from neutrophil (ENCLB854PSE)

description:
https://www.encodeproject.org/experiments/ENCSR557RDB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR557RDB
assay title: ChIP-seq
encode release date: 2016-11-17
lab: Bradley Bernstein, Broad
library encode accession: ENCLB854PSE
size range: 200-600

value: Bradley Bernstein, Broad

value: ENCBS462VZJ at ENCODE; https://www.encodeproject.org/ENCBS462VZJ/


title: ChIP-seq from NCI-H929 (ENCLB404EIB)

description:
https://www.encodeproject.org/experiments/ENCSR559IFS/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR559IFS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB404EIB
size range: 200-600

value: immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: adult

value: female

value: 62 year

value: multiple myeloma

value: ENCBS197CBA at ENCODE; https://www.encodeproject.org/ENCBS197CBA/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from K562 (ENCLB171QVK)

description:
https://www.encodeproject.org/experiments/ENCSR599SPN/
***************
biological replicate number: 14
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human K562 (fragmentation date 11-05-13)
experiment encode accession: ENCSR599SPN
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB171QVK

source_name: Homo sapiens K562 immortalized cell line

value: Control

value: K562, myelogenous leukemia

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Richard Myers, HAIB

value: ENCBS316CKF at ENCODE; https://www.encodeproject.org/ENCBS316CKF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from fibroblast of arm (ENCLB252EHD)

description:
https://www.encodeproject.org/experiments/ENCSR562MOC/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR562MOC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR922FLS
encode release date: 2016-12-05
lab: Bradley Bernstein, Broad
library encode accession: ENCLB252EHD
size range: 200-600
nucleic acid starting quantity: 11.98
nucleic acid starting quantity units: ng

value: fibroblast of arm

value: primary cell

value: These are primary fibroblasts taken from the PGP1 donor from the Personal Genome Project (PGP).

value: male

value: Thomas Gingeras, CSHL

value: ENCBS367AAA at ENCODE; https://www.encodeproject.org/ENCBS367AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_F183; http://web.expasy.org/cellosaurus/CVCL_F183

value: Coriell sample source; http://www.ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM23248&PgId=166


title: ChIP-seq from NCI-H929 (ENCLB672RPF)

description:
https://www.encodeproject.org/experiments/ENCSR559IFS/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR559IFS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR409FGC
encode release date: 2016-11-04
lab: Bradley Bernstein, Broad
library encode accession: ENCLB672RPF
size range: 200-600

value: immortalized cell line

value: human multiple myeloma established from the pleural effusion of a 62-year-old white woman with myeloma (IgAkappa) at relapse; cells were described as follows:cells synthesize high amounts of immunoglobulin, c-myc proto-oncogene is rearranged and c-myc RNA is expressed, cells are EBV-negative;

value: adult

value: female

value: 62 year

value: multiple myeloma

value: Bradley Bernstein, Broad

value: ENCBS571AQH at ENCODE; https://www.encodeproject.org/ENCBS571AQH/

value: Derived from ENCODE donor ENCDO220OYR; https://www.encodeproject.org/ENCDO220OYR/


title: ChIP-seq from HCT116 (ENCLB441XMX)

description:
https://www.encodeproject.org/experiments/ENCSR555LYM/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR555LYM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198WIH
encode release date: 2017-01-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB441XMX
size range: 200-600

source_name: Homo sapiens HCT116 immortalized cell line

value: cells obtained from ATCC

value: unknown

value: colorectal carcinoma

value: ENCBS494OPB at ENCODE; https://www.encodeproject.org/ENCBS494OPB/

value: Derived from ENCODE donor ENCDO000ABE; https://www.encodeproject.org/ENCDO000ABE/

value: ENCODE dbxrefs Cellosaurus CVCL_0291; http://web.expasy.org/cellosaurus/CVCL_0291

value: ATCC sample source; http://www.atcc.org/products/all/CCL-247.aspx#357C3571006A4259B64650D34DF19048


title: ChIP-seq from neural cell (ENCLB805RMU)

description:
https://www.encodeproject.org/experiments/ENCSR608VNA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR608VNA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR308JFE
encode release date: 2014-07-11
lab: Bradley Bernstein, Broad
library encode accession: ENCLB805RMU
size range: 300-800

value: neural cell

value: in vitro differentiated cells

value: embryonic

value: male

value: healthy

value: ENCBS504GFW at ENCODE; https://www.encodeproject.org/ENCBS504GFW/

value: Derived from ENCODE donor ENCDO000AAW; https://www.encodeproject.org/ENCDO000AAW/


title: ChIP-seq from HCT116 (ENCLB314GOD)

description:
https://www.encodeproject.org/experiments/ENCSR555LYM/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR555LYM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198WIH
encode release date: 2017-01-18
lab: Bradley Bernstein, Broad
library encode accession: ENCLB314GOD
size range: 200-600

value: immortalized cell line

value: Bradley Bernstein, Broad

value: ENCBS847SOB at ENCODE; https://www.encodeproject.org/ENCBS847SOB/


title: ChIP-seq from HepG2 (ENCLB752HJB)

description:
https://www.encodeproject.org/experiments/ENCSR590CNM/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on HepG2-human
experiment encode accession: ENCSR590CNM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR476TKW, ENCSR716SYG
encode release date: 2016-03-31
lab: Richard Myers, HAIB
library encode accession: ENCLB752HJB

source_name: Homo sapiens HepG2 immortalized cell line

value: HepG2, hepatocellular carcinoma

value: child

value: 15 year

value: hepatocellular carcinoma

value: Richard Myers, HAIB

value: ENCBS614CMA at ENCODE; https://www.encodeproject.org/ENCBS614CMA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/products/all/HB-8065.aspx


title: ChIP-seq from GM12878 (ENCLB095ZWO)

description:
https://www.encodeproject.org/experiments/ENCSR596QDC/
***************
biological replicate number: 12
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human GM12878 (fragmentation date 11-12-13)
experiment encode accession: ENCSR596QDC
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Richard Myers, HAIB
library encode accession: ENCLB095ZWO

source_name: Homo sapiens GM12878 immortalized cell line

value: Control

value: GM12878, B-lymphocyte, lymphoblastoid

value: adult

value: female

value: unknown

value: ENCBS460NBS at ENCODE; https://www.encodeproject.org/ENCBS460NBS/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; https://catalog.coriell.org/0/Sections/Search/Sample_Detail.aspx?Ref=GM12878&Product=CC


title: ChIP-seq from K562 (ENCLB531YPQ)

description:
https://www.encodeproject.org/experiments/ENCSR588AKU/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-Seq on K562-human
experiment encode accession: ENCSR588AKU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR599SPN, ENCSR996HUG
encode release date: 2016-03-31
lab: Richard Myers, HAIB
library encode accession: ENCLB531YPQ

value: immortalized cell line

value: K562, myelogenous leukemia

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS602AAA at ENCODE; https://www.encodeproject.org/ENCBS602AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from MCF-7 (ENCLB181PNG)

description:
https://www.encodeproject.org/experiments/ENCSR610GTD/
***************
biological replicate number: 6
technical replicate number: 1
description: Reverse Crosslink Control ChIP-seq on human MCF-7 (fragmentation date 02-24-14)
experiment encode accession: ENCSR610GTD
assay title: ChIP-seq
encode release date: 2015-11-13
lab: Richard Myers, HAIB
library encode accession: ENCLB181PNG
size range: 100-500

source_name: Homo sapiens MCF-7 immortalized cell line

value: Control

value: MCF-7, mammary gland adenocarcinoma

value: 69 year

value: breast cancer (adenocarcinoma)

value: Richard Myers, HAIB

value: ENCBS143XXF at ENCODE; https://www.encodeproject.org/ENCBS143XXF/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx