title: ChIP-seq from HepG2 (ENCLB029DNY)

description:
https://www.encodeproject.org/experiments/ENCSR683CSF/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF207 ChIP-seq on human HepG2
experiment encode accession: ENCSR683CSF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR399VVK
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB029DNY
size range: 450-650

value: Hepatocellular carcinoma

value: Michael Snyder, Stanford

value: ENCBS591PPP at ENCODE; https://www.encodeproject.org/ENCBS591PPP/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HepG2 (ENCLB456KGH)

status: Public on Jan 04 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR683CSF/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF207 ChIP-seq on human HepG2
experiment encode accession: ENCSR683CSF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR399VVK
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB456KGH
size range: 450-650

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens HepG2 immortalized cell line

tag: antibody

tag: line

value: immortalized cell line

tag: biosample encode accession

tag: dev stage

value: child

tag: Sex

value: male

tag: age

value: 15 year

tag: health state

value: hepatocellular carcinoma

tag: lab

tag: link

value: ENCBS225ERF at ENCODE; https://www.encodeproject.org/ENCBS225ERF/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from HepG2 (ENCLB134VGD)

description:
https://www.encodeproject.org/experiments/ENCSR571ROL/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against XRCC6
experiment encode accession: ENCSR571ROL
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR044NGV
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB134VGD
size range: 175-300

library_source: transcriptomic

molecule: total RNA

extract_protocol:
pipeline protocol: https://www.encodeproject.org/documents/dde0b669-0909-4f8b-946d-3cb9f35a6c52/@@download/attachment/eCLIP_analysisSOP_v1.P.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf

tag: passage number

value: Gene Yeo, UCSD

value: ENCBS861HMN at ENCODE; https://www.encodeproject.org/ENCBS861HMN/


title: eCLIP from K562 (ENCLB731KNF)

description:
https://www.encodeproject.org/experiments/ENCSR568DZW/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against TAF15
experiment encode accession: ENCSR568DZW
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR653CNZ
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB731KNF
size range: 175-300

source_name: Homo sapiens K562 immortalized cell line

extract_protocol:
pipeline protocol: https://www.encodeproject.org/documents/dde0b669-0909-4f8b-946d-3cb9f35a6c52/@@download/attachment/eCLIP_analysisSOP_v1.P.pdf
general protocol: https://www.encodeproject.org/documents/842f7424-5396-424a-a1a3-3f18707c3222/@@download/attachment/eCLIP_SOP_v1.P_110915.pdf
extraction method: see document

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS253VOZ at ENCODE; https://www.encodeproject.org/ENCBS253VOZ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB315RYQ)

description:
https://www.encodeproject.org/experiments/ENCSR567JEU/
***************
biological replicate number: 1
technical replicate number: 1
description: YBX3 ChIP-seq on human K562
experiment encode accession: ENCSR567JEU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2016-09-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB315RYQ
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: ENCBS697XFI at ENCODE; https://www.encodeproject.org/ENCBS697XFI/


title: eCLIP from K562 (ENCLB854AFD)

description:
https://www.encodeproject.org/experiments/ENCSR568DZW/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against TAF15
experiment encode accession: ENCSR568DZW
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR653CNZ
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB854AFD
size range: 175-300

value: ENCBS931MQO at ENCODE; https://www.encodeproject.org/ENCBS931MQO/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB538QJH)

description:
https://www.encodeproject.org/experiments/ENCSR567JEU/
***************
biological replicate number: 2
technical replicate number: 1
description: YBX3 ChIP-seq on human K562
experiment encode accession: ENCSR567JEU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2016-09-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB538QJH
size range: 450-650

value: ENCBS831ATS at ENCODE; https://www.encodeproject.org/ENCBS831ATS/


title: eCLIP from HepG2 (ENCLB976VRK)

description:
https://www.encodeproject.org/experiments/ENCSR668MJX/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against GRSF1
experiment encode accession: ENCSR668MJX
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR638YHN
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB976VRK
size range: 175-300

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: eCLIP from HepG2 (ENCLB016EPD)

description:
https://www.encodeproject.org/experiments/ENCSR565KBR/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against PRPF8
experiment encode accession: ENCSR565KBR
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB016EPD
size range: 175-300

value: Control

value: Gene Yeo, UCSD

value: ENCBS548DJV at ENCODE; https://www.encodeproject.org/ENCBS548DJV/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from K562 (ENCLB612WYL)

description:
https://www.encodeproject.org/experiments/ENCSR663WES/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against BUD13
experiment encode accession: ENCSR663WES
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR736LKF
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB612WYL
size range: 175-300

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from K562 (ENCLB680ZSR)

description:
https://www.encodeproject.org/experiments/ENCSR663NRA/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against ZRANB2
experiment encode accession: ENCSR663NRA
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR528HOM
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB680ZSR
size range: 175-300

value: immortalized cell line

value: ENCBS505ILK at ENCODE; https://www.encodeproject.org/ENCBS505ILK/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB306PZQ)

description:
https://www.encodeproject.org/experiments/ENCSR565XPP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ATF3 tagged K562 cell ine.
experiment encode accession: ENCSR565XPP
assay title: ChIP-seq
encode release date: 2016-08-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB306PZQ

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ATF3 fusion protein

tag: description

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ATF3-L

value: Kevin White, UChicago

value: ENCBS660SLH at ENCODE; https://www.encodeproject.org/ENCBS660SLH/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ76; http://web.expasy.org/cellosaurus/CVCL_GZ76


title: eCLIP from K562 (ENCLB599DZJ)

description:
https://www.encodeproject.org/experiments/ENCSR663NRA/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against ZRANB2
experiment encode accession: ENCSR663NRA
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR528HOM
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB599DZJ
size range: 175-300

value: Gene Yeo, UCSD


title: eCLIP from K562 (ENCLB679DRC)

description:
https://www.encodeproject.org/experiments/ENCSR663WES/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against BUD13
experiment encode accession: ENCSR663WES
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR736LKF
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB679DRC
size range: 175-300

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/


title: eCLIP from K562 (ENCLB449TDI)

description:
https://www.encodeproject.org/experiments/ENCSR657TZZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against ZNF622
experiment encode accession: ENCSR657TZZ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR594RFP
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB449TDI
size range: 175-300


title: siRNA RNA-seq from K562 (ENCLB976NFY)

description:
https://www.encodeproject.org/experiments/ENCSR561NXJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Control siRNA (3x Buffer,1x siRNA) against no target in K562 cells followed by RNA-seq.
experiment encode accession: ENCSR561NXJ
assay title: siRNA RNA-seq
assembly: GRCh38
encode release date: 2016-10-12
lab: Michael Snyder, Stanford
library encode accession: ENCLB976NFY
size range: >200
spikeins used: /references/ENCSR866KGS/

source_name: Homo sapiens K562 immortalized cell line transiently expressing siRNA targeting Non-specific target control

value: Control

value: K562 cells treated with siRNA knockdown using a human non-targeting control.

value: Sherman Weissman, Yale

value: ENCBS501YNO at ENCODE; https://www.encodeproject.org/ENCBS501YNO/


title: ChIP-seq from HEK293 (ENCLB524GWB)

description:
https://www.encodeproject.org/experiments/ENCSR559IOZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZXDB ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR559IOZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB524GWB
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZXDB fusion protein

value: eGFP-ZXDB

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZXDB under the control of a CMV promoter.

value: embryonic

value: female

value: unknown

value: Michael Snyder, Stanford

value: ENCBS242RIC at ENCODE; https://www.encodeproject.org/ENCBS242RIC/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from K562 (ENCLB502FFE)

description:
https://www.encodeproject.org/experiments/ENCSR657TZZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against ZNF622
experiment encode accession: ENCSR657TZZ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR594RFP
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB502FFE
size range: 175-300

value: immortalized cell line

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB501IGK)

description:
https://www.encodeproject.org/experiments/ENCSR679NKE/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against LARP4
experiment encode accession: ENCSR679NKE
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB501IGK
size range: 175-300

value: Control

value: Gene Yeo, UCSD

value: ENCBS318IMK at ENCODE; https://www.encodeproject.org/ENCBS318IMK/


title: eCLIP from HepG2 (ENCLB835ORC)

description:
https://www.encodeproject.org/experiments/ENCSR668MJX/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against GRSF1
experiment encode accession: ENCSR668MJX
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR638YHN
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB835ORC
size range: 175-300

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS492SDY at ENCODE; https://www.encodeproject.org/ENCBS492SDY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HEK293 (ENCLB741XLE)

description:
https://www.encodeproject.org/experiments/ENCSR559IOZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZXDB ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR559IOZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB741XLE
size range: 450-650

value: eGFP-ZXDB

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZXDB under the control of a CMV promoter.

value: embryonic

value: female

value: unknown

value: Michael Snyder, Stanford

value: ENCBS206XBQ at ENCODE; https://www.encodeproject.org/ENCBS206XBQ/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB914YJE)

description:
https://www.encodeproject.org/experiments/ENCSR563YDA/
***************
biological replicate number: 1
technical replicate number: 1
description: HDGF ChIP-seq on human K562
experiment encode accession: ENCSR563YDA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB914YJE
size range: 450-650

value: HDGF

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS850QNJ at ENCODE; https://www.encodeproject.org/ENCBS850QNJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from HepG2 (ENCLB180LHZ)

description:
https://www.encodeproject.org/experiments/ENCSR655NZA/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against XRN2
experiment encode accession: ENCSR655NZA
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR247PDK
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB180LHZ
size range: 175-300

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS948WDK at ENCODE; https://www.encodeproject.org/ENCBS948WDK/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB711MNJ)

description:
https://www.encodeproject.org/experiments/ENCSR671FKF/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against FASTKD2
experiment encode accession: ENCSR671FKF
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB711MNJ
size range: 175-300

value: Control

value: immortalized cell line

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/


title: ChIP-seq from MCF-7 (ENCLB087GPC)

description:
https://www.encodeproject.org/experiments/ENCSR557JTZ/
***************
biological replicate number: 1
technical replicate number: 1
description: GTF2F1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR557JTZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB087GPC
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: adult

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: Michael Snyder, Stanford

value: ENCBS216AOQ at ENCODE; https://www.encodeproject.org/ENCBS216AOQ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from K562 (ENCLB520NBN)

description:
https://www.encodeproject.org/experiments/ENCSR563YDA/
***************
biological replicate number: 2
technical replicate number: 1
description: HDGF ChIP-seq on human K562
experiment encode accession: ENCSR563YDA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB520NBN
size range: 450-650

value: HDGF

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS125ACM at ENCODE; https://www.encodeproject.org/ENCBS125ACM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB960ZOZ)

description:
https://www.encodeproject.org/experiments/ENCSR554FDZ/
***************
biological replicate number: 2
technical replicate number: 1
description: rabbit-IgG-control ChIP-seq on human K562
experiment encode accession: ENCSR554FDZ
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB960ZOZ
size range: 450-650

value: Control

value: immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: ENCBS232KKV at ENCODE; https://www.encodeproject.org/ENCBS232KKV/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from HepG2 (ENCLB436IZW)

description:
https://www.encodeproject.org/experiments/ENCSR648LAH/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against DDX3X
experiment encode accession: ENCSR648LAH
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR090VXV
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB436IZW
size range: 175-300

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: Gene Yeo, UCSD

value: ENCBS308ZPA at ENCODE; https://www.encodeproject.org/ENCBS308ZPA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB933GRD)

description:
https://www.encodeproject.org/experiments/ENCSR648LAH/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against DDX3X
experiment encode accession: ENCSR648LAH
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR090VXV
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB933GRD
size range: 175-300

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/


title: eCLIP from K562 (ENCLB893EAL)

description:
https://www.encodeproject.org/experiments/ENCSR653HQC/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against DROSHA
experiment encode accession: ENCSR653HQC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR828NSY
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB893EAL
size range: 175-300

value: DROSHA

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: eCLIP from HepG2 (ENCLB215DZE)

description:
https://www.encodeproject.org/experiments/ENCSR641PRC/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against SUB1
experiment encode accession: ENCSR641PRC
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB215DZE
size range: 175-300

value: Control

value: immortalized cell line

value: child

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/


title: ChIP-seq from MCF-7 (ENCLB579DPE)

description:
https://www.encodeproject.org/experiments/ENCSR557JTZ/
***************
biological replicate number: 2
technical replicate number: 1
description: GTF2F1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR557JTZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB579DPE
size range: 450-650

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: 69 year

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS536NWC at ENCODE; https://www.encodeproject.org/ENCBS536NWC/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: eCLIP from K562 (ENCLB499JUR)

description:
https://www.encodeproject.org/experiments/ENCSR562BJW/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against FXR1
experiment encode accession: ENCSR562BJW
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB499JUR
size range: 175-300

value: adult

value: female

value: Gene Yeo, UCSD

value: ENCBS831COV at ENCODE; https://www.encodeproject.org/ENCBS831COV/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB080FTU)

description:
https://www.encodeproject.org/experiments/ENCSR554FDZ/
***************
biological replicate number: 1
technical replicate number: 1
description: rabbit-IgG-control ChIP-seq on human K562
experiment encode accession: ENCSR554FDZ
assay title: ChIP-seq
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB080FTU
size range: 450-650

value: Control

value: immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS543YEP at ENCODE; https://www.encodeproject.org/ENCBS543YEP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB780OJF)

description:
https://www.encodeproject.org/experiments/ENCSR632PAG/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR632PAG
assay title: ChIP-seq
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB780OJF
size range: 450-650

value: Michael Snyder, Stanford

value: ENCBS352MRW at ENCODE; https://www.encodeproject.org/ENCBS352MRW/


title: ChIP-seq from K562 (ENCLB768TMO)

description:
https://www.encodeproject.org/experiments/ENCSR552YGL/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-NFE2 ChIP-seq on human K562
experiment encode accession: ENCSR552YGL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR375CYS
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB768TMO

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-NFE2 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to NFE2

value: Kevin White, UChicago

value: ENCBS085AAA at ENCODE; https://www.encodeproject.org/ENCBS085AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ90; http://web.expasy.org/cellosaurus/CVCL_GZ90

value: ENCODE dbxrefs K562; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=K562


title: ChIP-seq from K562 (ENCLB695IPK)

description:
https://www.encodeproject.org/experiments/ENCSR552YGL/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-NFE2 ChIP-seq on human K562
experiment encode accession: ENCSR552YGL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR375CYS
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB695IPK

value: adult

value: female

value: ENCBS443AAA at ENCODE; https://www.encodeproject.org/ENCBS443AAA/


title: eCLIP from HepG2 (ENCLB123SGJ)

description:
https://www.encodeproject.org/experiments/ENCSR638YHN/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against GRSF1
experiment encode accession: ENCSR638YHN
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB123SGJ
size range: 175-300

value: Control

value: immortalized cell line

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from GM12878 (ENCLB783GOT)

description:
https://www.encodeproject.org/experiments/ENCSR552XSN/
***************
biological replicate number: 2
technical replicate number: 1
description: MLLT1 ChIP-seq on human GM12878
experiment encode accession: ENCSR552XSN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB783GOT
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: Michael Snyder, Stanford

value: ENCBS276RPG at ENCODE; https://www.encodeproject.org/ENCBS276RPG/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: eCLIP from K562 (ENCLB778RFV)

description:
https://www.encodeproject.org/experiments/ENCSR653HQC/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against DROSHA
experiment encode accession: ENCSR653HQC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR828NSY
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB778RFV
size range: 175-300

value: DROSHA

value: immortalized cell line

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS318IMK at ENCODE; https://www.encodeproject.org/ENCBS318IMK/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from GM12878 (ENCLB448LQS)

description:
https://www.encodeproject.org/experiments/ENCSR552XSN/
***************
biological replicate number: 1
technical replicate number: 1
description: MLLT1 ChIP-seq on human GM12878
experiment encode accession: ENCSR552XSN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB448LQS
size range: 450-650

value: ENCBS339VHO at ENCODE; https://www.encodeproject.org/ENCBS339VHO/


title: eCLIP from HepG2 (ENCLB807VRW)

description:
https://www.encodeproject.org/experiments/ENCSR655NZA/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against XRN2
experiment encode accession: ENCSR655NZA
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR247PDK
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB807VRW
size range: 175-300

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS547JWV at ENCODE; https://www.encodeproject.org/ENCBS547JWV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from MCF-7 (ENCLB866CIU)

description:
https://www.encodeproject.org/experiments/ENCSR551ZDZ/
***************
biological replicate number: 2
technical replicate number: 1
description: MTA2 ChIP-seq on human MCF-7
experiment encode accession: ENCSR551ZDZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF, ENCSR594UCI
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB866CIU
size range: 450-650

value: immortalized cell line

value: adult

value: 69 year

value: breast cancer (adenocarcinoma)

value: Michael Snyder, Stanford

value: ENCBS308QKF at ENCODE; https://www.encodeproject.org/ENCBS308QKF/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from MCF-7 (ENCLB960HVE)

description:
https://www.encodeproject.org/experiments/ENCSR551ZDZ/
***************
biological replicate number: 1
technical replicate number: 1
description: MTA2 ChIP-seq on human MCF-7
experiment encode accession: ENCSR551ZDZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF, ENCSR594UCI
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB960HVE
size range: 450-650

value: female

value: ENCBS957OEW at ENCODE; https://www.encodeproject.org/ENCBS957OEW/


title: eCLIP from K562 (ENCLB422RCY)

description:
https://www.encodeproject.org/experiments/ENCSR615AAW/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against QKI
experiment encode accession: ENCSR615AAW
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB422RCY
size range: 175-300

value: Control

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from HEK293 (ENCLB598ESL)

description:
https://www.encodeproject.org/experiments/ENCSR551KAP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF138 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR551KAP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB598ESL
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF138 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF138 under the control of a CMV promoter.

value: embryonic

value: unknown

value: ENCBS646GOM at ENCODE; https://www.encodeproject.org/ENCBS646GOM/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from K562 (ENCLB893WUO)

description:
https://www.encodeproject.org/experiments/ENCSR660VTT/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against YBX3
experiment encode accession: ENCSR660VTT
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB893WUO
size range: 175-300

value: immortalized cell line

value: adult

value: Gene Yeo, UCSD

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB283ZKE)

description:
https://www.encodeproject.org/experiments/ENCSR551KAP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF138 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR551KAP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB283ZKE
size range: 450-650

value: female

value: Michael Snyder, Stanford

value: ENCBS403FNN at ENCODE; https://www.encodeproject.org/ENCBS403FNN/


title: eCLIP from K562 (ENCLB389OYK)

description:
https://www.encodeproject.org/experiments/ENCSR594RFP/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against ZNF622
experiment encode accession: ENCSR594RFP
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB389OYK
size range: 175-300

value: Control

value: 53 year

value: chronic myelogenous leukemia (CML)


title: ChIP-seq from MCF-7 (ENCLB607ABP)

description:
https://www.encodeproject.org/experiments/ENCSR591EBL/
***************
biological replicate number: 1
technical replicate number: 1
description: NBN ChIP-seq on human MCF-7
experiment encode accession: ENCSR591EBL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB607ABP
size range: 450-650

value: NBN

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS957OEW at ENCODE; https://www.encodeproject.org/ENCBS957OEW/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from K562 (ENCLB606PCO)

description:
https://www.encodeproject.org/experiments/ENCSR550HCT/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-KLF1 ChIP-seq on human K562
experiment encode accession: ENCSR550HCT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR249OFO
encode release date: 2016-01-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB606PCO
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-KLF1 fusion protein

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to KLF1

value: Kevin White, UChicago

value: ENCBS386AAA at ENCODE; https://www.encodeproject.org/ENCBS386AAA/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW32; http://web.expasy.org/cellosaurus/CVCL_AW32

value: ENCODE dbxrefs K562; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=K562


title: ChIP-seq from K562 (ENCLB371OAT)

description:
https://www.encodeproject.org/experiments/ENCSR550HCT/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-KLF1 ChIP-seq on human K562
experiment encode accession: ENCSR550HCT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR249OFO
encode release date: 2016-01-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB371OAT
size range: 450-650

value: adult

value: female

value: ENCBS431AAA at ENCODE; https://www.encodeproject.org/ENCBS431AAA/


title: ChIP-seq from K562 (ENCLB010XKT)

description:
https://www.encodeproject.org/experiments/ENCSR632PAG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR632PAG
assay title: ChIP-seq
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB010XKT
size range: 450-650

value: Control

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Michael Snyder, Stanford

value: ENCBS357NWO at ENCODE; https://www.encodeproject.org/ENCBS357NWO/


title: ChIP-seq from MCF-7 (ENCLB352CPV)

description:
https://www.encodeproject.org/experiments/ENCSR591EBL/
***************
biological replicate number: 2
technical replicate number: 1
description: NBN ChIP-seq on human MCF-7
experiment encode accession: ENCSR591EBL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB352CPV
size range: 450-650

value: NBN

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS195LAY at ENCODE; https://www.encodeproject.org/ENCBS195LAY/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: eCLIP from HepG2 (ENCLB259QPU)

description:
https://www.encodeproject.org/experiments/ENCSR583KVR/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against XPO5
experiment encode accession: ENCSR583KVR
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB259QPU
size range: 175-300

value: immortalized cell line

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB392RHM)

description:
https://www.encodeproject.org/experiments/ENCSR550DVK/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against HNRNPC
experiment encode accession: ENCSR550DVK
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR497ANA
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB392RHM
size range: 175-300

value: HNRNPC

value: ENCBS471DUZ at ENCODE; https://www.encodeproject.org/ENCBS471DUZ/


title: eCLIP from HepG2 (ENCLB697VFO)

description:
https://www.encodeproject.org/experiments/ENCSR580MFX/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against SUPV3L1
experiment encode accession: ENCSR580MFX
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR376KLZ
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB697VFO
size range: 175-300

value: ENCBS074YUC at ENCODE; https://www.encodeproject.org/ENCBS074YUC/


title: eCLIP from HepG2 (ENCLB094PVE)

description:
https://www.encodeproject.org/experiments/ENCSR550DVK/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against HNRNPC
experiment encode accession: ENCSR550DVK
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR497ANA
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB094PVE
size range: 175-300

value: ENCBS626BOT at ENCODE; https://www.encodeproject.org/ENCBS626BOT/


title: eCLIP from K562 (ENCLB416FXC)

description:
https://www.encodeproject.org/experiments/ENCSR589YHM/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against HLTF
experiment encode accession: ENCSR589YHM
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR502NKG
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB416FXC
size range: 175-300

value: HLTF

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS318IMK at ENCODE; https://www.encodeproject.org/ENCBS318IMK/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from K562 (ENCLB173PCG)

description:
https://www.encodeproject.org/experiments/ENCSR589YHM/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against HLTF
experiment encode accession: ENCSR589YHM
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR502NKG
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB173PCG
size range: 175-300

value: immortalized cell line

value: Gene Yeo, UCSD

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/


title: ChIP-seq from K562 (ENCLB096NOI)

description:
https://www.encodeproject.org/experiments/ENCSR545WDI/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-RELA tagged K562 cell line.
experiment encode accession: ENCSR545WDI
assay title: ChIP-seq
encode release date: 2015-12-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB096NOI
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-RELA fusion protein

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to RELA

value: Kevin White, UChicago

value: ENCBS557OXO at ENCODE; https://www.encodeproject.org/ENCBS557OXO/

value: ENCODE dbxrefs Cellosaurus CVCL_AW41; http://web.expasy.org/cellosaurus/CVCL_AW41


title: eCLIP from HepG2 (ENCLB436FYS)

description:
https://www.encodeproject.org/experiments/ENCSR570WLM/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against QKI
experiment encode accession: ENCSR570WLM
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR130TOJ
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB436FYS
size range: 175-300

value: QKI

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS308ZPA at ENCODE; https://www.encodeproject.org/ENCBS308ZPA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB755AXP)

description:
https://www.encodeproject.org/experiments/ENCSR619LRH/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against TROVE2
experiment encode accession: ENCSR619LRH
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB755AXP
size range: 175-300

value: immortalized cell line

value: ENCBS881CIF at ENCODE; https://www.encodeproject.org/ENCBS881CIF/


title: ChIP-seq from K562 (ENCLB469VTS)

description:
https://www.encodeproject.org/experiments/ENCSR542WJU/
***************
biological replicate number: 1
technical replicate number: 1
description: MCM7 ChIP-seq on human K562
experiment encode accession: ENCSR542WJU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2016-09-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB469VTS
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS603CUX at ENCODE; https://www.encodeproject.org/ENCBS603CUX/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from HepG2 (ENCLB238JYQ)

description:
https://www.encodeproject.org/experiments/ENCSR570WLM/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against QKI
experiment encode accession: ENCSR570WLM
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR130TOJ
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB238JYQ
size range: 175-300

value: QKI

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/


title: eCLIP from HepG2 (ENCLB750SUK)

description:
https://www.encodeproject.org/experiments/ENCSR580MFX/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against SUPV3L1
experiment encode accession: ENCSR580MFX
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR376KLZ
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB750SUK
size range: 175-300

value: immortalized cell line

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB274RLM)

description:
https://www.encodeproject.org/experiments/ENCSR541QHS/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against AUH
experiment encode accession: ENCSR541QHS
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR943ZKM
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB274RLM
size range: 175-300

value: AUH

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS119WDQ at ENCODE; https://www.encodeproject.org/ENCBS119WDQ/


title: ChIP-seq from HEK293 (ENCLB175UHG)

description:
https://www.encodeproject.org/experiments/ENCSR541PDV/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZBTB33 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR541PDV
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB175UHG
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZBTB33 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZBTB33 under the control of a CMV promoter.

value: unknown

value: embryonic

value: Michael Snyder, Stanford

value: ENCBS233IJK at ENCODE; https://www.encodeproject.org/ENCBS233IJK/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from K562 (ENCLB441HJU)

description:
https://www.encodeproject.org/experiments/ENCSR541QHS/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against AUH
experiment encode accession: ENCSR541QHS
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR943ZKM
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB441HJU
size range: 175-300

value: immortalized cell line

value: Gene Yeo, UCSD

value: ENCBS565ULH at ENCODE; https://www.encodeproject.org/ENCBS565ULH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB254MAR)

description:
https://www.encodeproject.org/experiments/ENCSR568PGX/
***************
biological replicate number: 2
technical replicate number: 1
description: HDAC1 ChIP-seq on human K562
experiment encode accession: ENCSR568PGX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB254MAR
size range: 450-650

value: adult

value: ENCBS352MRW at ENCODE; https://www.encodeproject.org/ENCBS352MRW/


title: eCLIP from HepG2 (ENCLB915CSQ)

description:
https://www.encodeproject.org/experiments/ENCSR565DGW/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against DHX30
experiment encode accession: ENCSR565DGW
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR151MPZ
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB915CSQ
size range: 175-300

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS074YUC at ENCODE; https://www.encodeproject.org/ENCBS074YUC/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB747FPE)

description:
https://www.encodeproject.org/experiments/ENCSR568PGX/
***************
biological replicate number: 1
technical replicate number: 1
description: HDAC1 ChIP-seq on human K562
experiment encode accession: ENCSR568PGX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-11-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB747FPE
size range: 450-650

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS387VPF at ENCODE; https://www.encodeproject.org/ENCBS387VPF/


title: ChIP-seq from HEK293 (ENCLB207AZB)

description:
https://www.encodeproject.org/experiments/ENCSR541PDV/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZBTB33 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR541PDV
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB207AZB
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZBTB33 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS464TRL at ENCODE; https://www.encodeproject.org/ENCBS464TRL/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from HepG2 (ENCLB676OOF)

description:
https://www.encodeproject.org/experiments/ENCSR565DGW/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against DHX30
experiment encode accession: ENCSR565DGW
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR151MPZ
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB676OOF
size range: 175-300

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/


title: ChIP-seq from HEK293 (ENCLB340CIG)

description:
https://www.encodeproject.org/experiments/ENCSR559SSU/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF438 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR559SSU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB340CIG
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF438 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF438 under the control of a CMV promoter.

value: ENCBS393YFN at ENCODE; https://www.encodeproject.org/ENCBS393YFN/


title: ChIP-seq from HEK293 (ENCLB905CRP)

description:
https://www.encodeproject.org/experiments/ENCSR535DIA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-GLIS2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR535DIA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB905CRP
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-GLIS2 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-GLIS2 under the control of a CMV promoter.

value: female

value: ENCBS627NYN at ENCODE; https://www.encodeproject.org/ENCBS627NYN/


title: eCLIP from K562 (ENCLB907IEL)

description:
https://www.encodeproject.org/experiments/ENCSR550SGC/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against AKAP8L
experiment encode accession: ENCSR550SGC
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB907IEL
size range: 175-300

value: Control

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS318IMK at ENCODE; https://www.encodeproject.org/ENCBS318IMK/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB563WZL)

description:
https://www.encodeproject.org/experiments/ENCSR542WJU/
***************
biological replicate number: 2
technical replicate number: 1
description: MCM7 ChIP-seq on human K562
experiment encode accession: ENCSR542WJU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2016-09-27
lab: Michael Snyder, Stanford
library encode accession: ENCLB563WZL
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: ENCBS831ATS at ENCODE; https://www.encodeproject.org/ENCBS831ATS/


title: ChIP-seq from HEK293 (ENCLB398SWA)

description:
https://www.encodeproject.org/experiments/ENCSR559SSU/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF438 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR559SSU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB398SWA
size range: 450-650

value: unknown

value: embryonic

value: ENCBS582HQT at ENCODE; https://www.encodeproject.org/ENCBS582HQT/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB092HSE)

description:
https://www.encodeproject.org/experiments/ENCSR535DIA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-GLIS2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR535DIA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB092HSE
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-GLIS2 under the control of a CMV promoter.

value: female

value: ENCBS101WTD at ENCODE; https://www.encodeproject.org/ENCBS101WTD/


title: eCLIP from K562 (ENCLB195SRU)

description:
https://www.encodeproject.org/experiments/ENCSR534YOI/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against PRPF8
experiment encode accession: ENCSR534YOI
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR096SZE
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB195SRU
size range: 175-300

value: adult

value: Gene Yeo, UCSD

value: ENCBS569AYK at ENCODE; https://www.encodeproject.org/ENCBS569AYK/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from HepG2 (ENCLB998IUB)

description:
https://www.encodeproject.org/experiments/ENCSR543TPH/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against AGGF1
experiment encode accession: ENCSR543TPH
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR182AEG
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB998IUB
size range: 175-300

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

value: ENCBS308ZPA at ENCODE; https://www.encodeproject.org/ENCBS308ZPA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from K562 (ENCLB853UAV)

description:
https://www.encodeproject.org/experiments/ENCSR532VUB/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against CPSF6
experiment encode accession: ENCSR532VUB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR249WNK
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB853UAV
size range: 175-300

value: immortalized cell line

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS359TRM at ENCODE; https://www.encodeproject.org/ENCBS359TRM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from HepG2 (ENCLB859OOD)

description:
https://www.encodeproject.org/experiments/ENCSR544CTM/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against TRA2A
experiment encode accession: ENCSR544CTM
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB859OOD
size range: 175-300

value: Control

value: ENCBS533IVT at ENCODE; https://www.encodeproject.org/ENCBS533IVT/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB683HLU)

description:
https://www.encodeproject.org/experiments/ENCSR543TPH/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against AGGF1
experiment encode accession: ENCSR543TPH
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR182AEG
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB683HLU
size range: 175-300

value: Gene Yeo, UCSD

value: ENCBS881CIF at ENCODE; https://www.encodeproject.org/ENCBS881CIF/


title: eCLIP from K562 (ENCLB131TWE)

description:
https://www.encodeproject.org/experiments/ENCSR529FKI/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against CSDA
experiment encode accession: ENCSR529FKI
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR660VTT
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB131TWE
size range: 175-300

value: adult

value: female

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/


title: ChIP-seq from K562 (ENCLB015DNV)

description:
https://www.encodeproject.org/experiments/ENCSR532EMP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF740 ChIP-seq on human K562
experiment encode accession: ENCSR532EMP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR209YCR
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB015DNV

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF740 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF740

value: Kevin White, UChicago

value: ENCBS160YCN at ENCODE; https://www.encodeproject.org/ENCBS160YCN/

value: ENCODE dbxrefs Cellosaurus CVCL_HA08; http://web.expasy.org/cellosaurus/CVCL_HA08


title: ChIP-seq from K562 (ENCLB030YBJ)

description:
https://www.encodeproject.org/experiments/ENCSR530XQI/
***************
biological replicate number: 1
technical replicate number: 1
description: L3MBTL2 ChIP-seq on human K562
experiment encode accession: ENCSR530XQI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-23
lab: Michael Snyder, Stanford
library encode accession: ENCLB030YBJ
size range: 450-650

value: immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS543YEP at ENCODE; https://www.encodeproject.org/ENCBS543YEP/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from K562 (ENCLB422FBK)

description:
https://www.encodeproject.org/experiments/ENCSR529FKI/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against CSDA
experiment encode accession: ENCSR529FKI
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR660VTT
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB422FBK
size range: 175-300

value: chronic myelogenous leukemia (CML)

value: ENCBS505ILK at ENCODE; https://www.encodeproject.org/ENCBS505ILK/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from K562 (ENCLB709RHI)

description:
https://www.encodeproject.org/experiments/ENCSR529GSJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against DHX30
experiment encode accession: ENCSR529GSJ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR224SND
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB709RHI
size range: 175-300

value: adult

value: Gene Yeo, UCSD

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB003ART)

description:
https://www.encodeproject.org/experiments/ENCSR530XQI/
***************
biological replicate number: 2
technical replicate number: 1
description: L3MBTL2 ChIP-seq on human K562
experiment encode accession: ENCSR530XQI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-23
lab: Michael Snyder, Stanford
library encode accession: ENCLB003ART
size range: 450-650

value: female

value: ENCBS293ZDP at ENCODE; https://www.encodeproject.org/ENCBS293ZDP/


title: eCLIP from HepG2 (ENCLB541OSO)

description:
https://www.encodeproject.org/experiments/ENCSR527DXF/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against EFTUD2
experiment encode accession: ENCSR527DXF
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR878HWU
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB541OSO
size range: 175-300

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from K562 (ENCLB639LHO)

description:
https://www.encodeproject.org/experiments/ENCSR532VUB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against CPSF6
experiment encode accession: ENCSR532VUB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR249WNK
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB639LHO
size range: 175-300

value: immortalized cell line

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS073JAL at ENCODE; https://www.encodeproject.org/ENCBS073JAL/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from HepG2 (ENCLB800FEK)

description:
https://www.encodeproject.org/experiments/ENCSR527DXF/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against EFTUD2
experiment encode accession: ENCSR527DXF
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR878HWU
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB800FEK
size range: 175-300

value: Gene Yeo, UCSD

value: ENCBS492SDY at ENCODE; https://www.encodeproject.org/ENCBS492SDY/


title: ChIP-seq from HepG2 (ENCLB262FQK)

description:
https://www.encodeproject.org/experiments/ENCSR525YFS/
***************
biological replicate number: 1
technical replicate number: 1
description: ZBTB40 ChIP-seq on human HepG2
experiment encode accession: ENCSR525YFS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2016-08-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB262FQK
size range: 450-650

value: Hepatocellular carcinoma

value: Michael Snyder, Stanford

value: ENCBS777STD at ENCODE; https://www.encodeproject.org/ENCBS777STD/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB518XPN)

description:
https://www.encodeproject.org/experiments/ENCSR534YOI/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against PRPF8
experiment encode accession: ENCSR534YOI
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR096SZE
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB518XPN
size range: 175-300

value: adult

value: female

value: ENCBS083CLD at ENCODE; https://www.encodeproject.org/ENCBS083CLD/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from HepG2 (ENCLB666OIM)

description:
https://www.encodeproject.org/experiments/ENCSR525YFS/
***************
biological replicate number: 2
technical replicate number: 1
description: ZBTB40 ChIP-seq on human HepG2
experiment encode accession: ENCSR525YFS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2016-08-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB666OIM
size range: 450-650

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS591PPP at ENCODE; https://www.encodeproject.org/ENCBS591PPP/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB961RCO)

description:
https://www.encodeproject.org/experiments/ENCSR524BUE/
***************
biological replicate number: 2
technical replicate number: 1
description: RAD51 ChIP-seq on human K562
experiment encode accession: ENCSR524BUE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB961RCO
size range: 450-650

value: immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS839CNN at ENCODE; https://www.encodeproject.org/ENCBS839CNN/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HEK293 (ENCLB084DHR)

description:
https://www.encodeproject.org/experiments/ENCSR523KUQ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq on eGFP-ATF2 tagged human HEK293 cells.
experiment encode accession: ENCSR523KUQ
assay title: ChIP-seq
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB084DHR
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ATF2 fusion protein

value: Control

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ATF2 under the control of a CMV promoter.

value: embryonic

value: unknown

value: female

value: Michael Snyder, Stanford

value: ENCBS818PXJ at ENCODE; https://www.encodeproject.org/ENCBS818PXJ/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB192WXF)

description:
https://www.encodeproject.org/experiments/ENCSR517GAU/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF414 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR517GAU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB192WXF
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF414 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF414 under the control of a CMV promoter.

value: ENCBS862JQY at ENCODE; https://www.encodeproject.org/ENCBS862JQY/


title: ChIP-seq from HEK293 (ENCLB700PYI)

description:
https://www.encodeproject.org/experiments/ENCSR517GAU/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF414 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR517GAU
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB700PYI
size range: 450-650

value: ENCBS852XCW at ENCODE; https://www.encodeproject.org/ENCBS852XCW/


title: eCLIP from K562 (ENCLB948HJW)

description:
https://www.encodeproject.org/experiments/ENCSR529GSJ/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against DHX30
experiment encode accession: ENCSR529GSJ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR224SND
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB948HJW
size range: 175-300

value: immortalized cell line

value: adult

value: Gene Yeo, UCSD

value: ENCBS039CVO at ENCODE; https://www.encodeproject.org/ENCBS039CVO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB852SAT)

description:
https://www.encodeproject.org/experiments/ENCSR532EMP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF740 ChIP-seq on human K562
experiment encode accession: ENCSR532EMP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR209YCR
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB852SAT

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF740

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Kevin White, UChicago

value: ENCBS353NLF at ENCODE; https://www.encodeproject.org/ENCBS353NLF/

value: ENCODE dbxrefs Cellosaurus CVCL_HA08; http://web.expasy.org/cellosaurus/CVCL_HA08


title: ChIP-seq from HepG2 (ENCLB726MYU)

description:
https://www.encodeproject.org/experiments/ENCSR523XCR/
***************
biological replicate number: 3
technical replicate number: 1
description: RNF2 ChIP-seq on human HepG2
experiment encode accession: ENCSR523XCR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2016-06-23
lab: Michael Snyder, Stanford
library encode accession: ENCLB726MYU
size range: 450-650

source_name: Homo sapiens HepG2 immortalized cell line

value: Hepatocellular carcinoma

value: child

value: 15 year

value: male

value: Michael Snyder, Stanford

value: hepatocellular carcinoma

value: ENCBS777STD at ENCODE; https://www.encodeproject.org/ENCBS777STD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from K562 (ENCLB150UIS)

description:
https://www.encodeproject.org/experiments/ENCSR512EZA/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against TBRG4
experiment encode accession: ENCSR512EZA
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB150UIS
size range: 175-300

source_name: Homo sapiens K562 immortalized cell line

value: Control

value: immortalized cell line

value: adult

value: female

value: Gene Yeo, UCSD

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from HepG2 (ENCLB107QOW)

description:
https://www.encodeproject.org/experiments/ENCSR506UPY/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against SUGP2
experiment encode accession: ENCSR506UPY
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR895TTM
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB107QOW
size range: 175-300

value: ENCBS074YUC at ENCODE; https://www.encodeproject.org/ENCBS074YUC/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB812SGL)

description:
https://www.encodeproject.org/experiments/ENCSR506UPY/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against SUGP2
experiment encode accession: ENCSR506UPY
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR895TTM
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB812SGL
size range: 175-300

value: child

value: 15 year

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/


title: eCLIP from K562 (ENCLB935EDZ)

description:
https://www.encodeproject.org/experiments/ENCSR520BZQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against HNRNPU
experiment encode accession: ENCSR520BZQ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR829SLO
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB935EDZ
size range: 175-300

value: HNRNPU

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS994EIH at ENCODE; https://www.encodeproject.org/ENCBS994EIH/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from K562 (ENCLB174IHH)

description:
https://www.encodeproject.org/experiments/ENCSR520BZQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against HNRNPU
experiment encode accession: ENCSR520BZQ
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR829SLO
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB174IHH
size range: 175-300

value: immortalized cell line

value: ENCBS218QRN at ENCODE; https://www.encodeproject.org/ENCBS218QRN/


title: eCLIP from K562 (ENCLB421RNZ)

description:
https://www.encodeproject.org/experiments/ENCSR528HOM/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against ZRANB2
experiment encode accession: ENCSR528HOM
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB421RNZ
size range: 175-300

value: Control

value: adult

value: female


title: ChIP-seq from HEK293 (ENCLB999NOH)

description:
https://www.encodeproject.org/experiments/ENCSR519HKW/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF264 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR519HKW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB999NOH
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF264 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF264 under the control of a CMV promoter.

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS584HTL at ENCODE; https://www.encodeproject.org/ENCBS584HTL/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB883JKC)

description:
https://www.encodeproject.org/experiments/ENCSR519HKW/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF264 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR519HKW
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB883JKC
size range: 450-650

value: ENCBS731OFH at ENCODE; https://www.encodeproject.org/ENCBS731OFH/


title: ChIP-seq from HepG2 (ENCLB527SUL)

description:
https://www.encodeproject.org/experiments/ENCSR523XCR/
***************
biological replicate number: 1
technical replicate number: 1
description: RNF2 ChIP-seq on human HepG2
experiment encode accession: ENCSR523XCR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2016-06-23
lab: Michael Snyder, Stanford
library encode accession: ENCLB527SUL
size range: 450-650

value: Hepatocellular carcinoma

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS716YFX at ENCODE; https://www.encodeproject.org/ENCBS716YFX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB188EEL)

description:
https://www.encodeproject.org/experiments/ENCSR506OTC/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against TBRG4
experiment encode accession: ENCSR506OTC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR512EZA
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB188EEL
size range: 175-300

value: immortalized cell line

value: adult

value: 53 year

value: female

value: Gene Yeo, UCSD

value: chronic myelogenous leukemia (CML)

value: ENCBS505ILK at ENCODE; https://www.encodeproject.org/ENCBS505ILK/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from HepG2 (ENCLB874LFX)

description:
https://www.encodeproject.org/experiments/ENCSR506EIW/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against SFPQ
experiment encode accession: ENCSR506EIW
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB874LFX
size range: 175-300

value: Control

value: child

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/


title: ChIP-seq from K562 (ENCLB774HOZ)

description:
https://www.encodeproject.org/experiments/ENCSR524BUE/
***************
biological replicate number: 1
technical replicate number: 1
description: RAD51 ChIP-seq on human K562
experiment encode accession: ENCSR524BUE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB774HOZ
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: Michael Snyder, Stanford

value: ENCBS994WPS at ENCODE; https://www.encodeproject.org/ENCBS994WPS/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from A549 (ENCLB382QVT)

description:
https://www.encodeproject.org/experiments/ENCSR513XQX/
***************
biological replicate number: 2
technical replicate number: 1
description: SIN3A ChIP-seq on human A549
experiment encode accession: ENCSR513XQX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB382QVT
size range: 450-650

source_name: Homo sapiens A549 immortalized cell line

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: 58 year

value: male

value: ENCBS611JSC at ENCODE; https://www.encodeproject.org/ENCBS611JSC/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from A549 (ENCLB354CYM)

description:
https://www.encodeproject.org/experiments/ENCSR513XQX/
***************
biological replicate number: 3
technical replicate number: 1
description: SIN3A ChIP-seq on human A549
experiment encode accession: ENCSR513XQX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB354CYM
size range: 450-650

value: immortalized cell line

value: adult

value: ENCBS848SUF at ENCODE; https://www.encodeproject.org/ENCBS848SUF/


title: eCLIP from HepG2 (ENCLB499JKH)

description:
https://www.encodeproject.org/experiments/ENCSR513NDD/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against SRSF7
experiment encode accession: ENCSR513NDD
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR629MQN
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB499JKH
size range: 175-300

value: 15 year

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS861HMN at ENCODE; https://www.encodeproject.org/ENCBS861HMN/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB415WLR)

description:
https://www.encodeproject.org/experiments/ENCSR490IEE/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against UCHL5
experiment encode accession: ENCSR490IEE
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR161TFX
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB415WLR
size range: 175-300

value: child

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/


title: eCLIP from HepG2 (ENCLB047ZLV)

description:
https://www.encodeproject.org/experiments/ENCSR490IEE/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against UCHL5
experiment encode accession: ENCSR490IEE
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR161TFX
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB047ZLV
size range: 175-300

value: male

value: ENCBS492SDY at ENCODE; https://www.encodeproject.org/ENCBS492SDY/


title: eCLIP from HepG2 (ENCLB131LAS)

description:
https://www.encodeproject.org/experiments/ENCSR513NDD/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against SRSF7
experiment encode accession: ENCSR513NDD
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR629MQN
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB131LAS
size range: 175-300

value: ENCBS547JWV at ENCODE; https://www.encodeproject.org/ENCBS547JWV/


title: eCLIP from HepG2 (ENCLB773TIT)

description:
https://www.encodeproject.org/experiments/ENCSR486YGP/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against FUBP3
experiment encode accession: ENCSR486YGP
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR056RZV
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB773TIT
size range: 175-300


title: ChIP-seq from K562 (ENCLB308QXN)

description:
https://www.encodeproject.org/experiments/ENCSR508DQA/
***************
biological replicate number: 2
technical replicate number: 1
description: FOXK2 ChIP-seq on human K562
experiment encode accession: ENCSR508DQA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-04-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB308QXN
size range: 450-650

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS850QNJ at ENCODE; https://www.encodeproject.org/ENCBS850QNJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB318JMG)

description:
https://www.encodeproject.org/experiments/ENCSR508DQA/
***************
biological replicate number: 1
technical replicate number: 1
description: FOXK2 ChIP-seq on human K562
experiment encode accession: ENCSR508DQA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-04-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB318JMG
size range: 450-650

value: immortalized cell line

value: adult

value: ENCBS697XFI at ENCODE; https://www.encodeproject.org/ENCBS697XFI/


title: eCLIP from HepG2 (ENCLB122BNY)

description:
https://www.encodeproject.org/experiments/ENCSR486YGP/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against FUBP3
experiment encode accession: ENCSR486YGP
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR056RZV
encode release date: 2016-09-21
lab: Gene Yeo, UCSD
library encode accession: ENCLB122BNY
size range: 175-300

value: 15 year

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from K562 (ENCLB866OMK)

description:
https://www.encodeproject.org/experiments/ENCSR506OTC/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against TBRG4
experiment encode accession: ENCSR506OTC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR512EZA
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB866OMK
size range: 175-300

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB160CCG)

description:
https://www.encodeproject.org/experiments/ENCSR504VDV/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF654 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR504VDV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB160CCG
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF654 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF654 under the control of a CMV promoter.

value: embryonic

value: unknown

value: ENCBS603HMT at ENCODE; https://www.encodeproject.org/ENCBS603HMT/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB871JCN)

description:
https://www.encodeproject.org/experiments/ENCSR504VDV/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF654 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR504VDV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB871JCN
size range: 450-650

value: female

value: Michael Snyder, Stanford

value: ENCBS543KCA at ENCODE; https://www.encodeproject.org/ENCBS543KCA/