title: ChIP-seq from HepG2 (ENCLB620BZF)

description:
https://www.encodeproject.org/experiments/ENCSR029IBC/
***************
biological replicate number: 1
technical replicate number: 1
description: ARNT ChIP-seq on human HepG2
experiment encode accession: ENCSR029IBC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB620BZF
size range: 450-650

value: ARNT

value: immortalized cell line

value: Hepatocellular carcinoma

value: child

value: 15 year

value: male

tag: lab

value: hepatocellular carcinoma

tag: link

value: ENCBS777STD at ENCODE; https://www.encodeproject.org/ENCBS777STD/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB024FCM)

status: Public on Oct 20 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR223MLH/
***************
biological replicate number: 1
technical replicate number: 1
description: BRCA1 ChIP-seq on human K562
experiment encode accession: ENCSR223MLH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2017-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB024FCM
size range: 450-650

library_source: genomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 immortalized cell line

extract_protocol: not provided

tag: antibody

tag: line

tag: biosample encode accession

tag: Sex

value: female

value: Michael Snyder, Stanford

tag: health state

value: chronic myelogenous leukemia (CML)

tag: age

value: 53 year

tag: dev stage

value: adult

value: ENCBS948ZNZ at ENCODE; https://www.encodeproject.org/ENCBS948ZNZ/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HepG2 (ENCLB845RQW)

description:
https://www.encodeproject.org/experiments/ENCSR029IBC/
***************
biological replicate number: 2
technical replicate number: 1
description: ARNT ChIP-seq on human HepG2
experiment encode accession: ENCSR029IBC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR121CWV
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB845RQW
size range: 450-650

source_name: Homo sapiens HepG2 immortalized cell line

value: ARNT

value: immortalized cell line

tag: description

value: ENCBS591PPP at ENCODE; https://www.encodeproject.org/ENCBS591PPP/


title: ChIP-seq from K562 (ENCLB305QSD)

description:
https://www.encodeproject.org/experiments/ENCSR162IEM/
***************
biological replicate number: 2
technical replicate number: 1
description: MYBL2 ChIP-seq on human K562
experiment encode accession: ENCSR162IEM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG, ENCSR173USI
encode release date: 2017-08-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB305QSD
size range: 450-650

value: ENCBS125ACM at ENCODE; https://www.encodeproject.org/ENCBS125ACM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from sigmoid colon (ENCLB123LEI)

description:
https://www.encodeproject.org/experiments/ENCSR222SQE/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human sigmoid colon
experiment encode accession: ENCSR222SQE
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR187FNC
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB123LEI
size range: 450-650

source_name: Homo sapiens sigmoid colon tissue male adult (54 years)

value: CTCF

value: sigmoid colon

value: tissue

value: male

value: 54 year

value: ENCBS345HRP at ENCODE; https://www.encodeproject.org/ENCBS345HRP/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from C4-2B (ENCLB876TKQ)

description:
https://www.encodeproject.org/experiments/ENCSR027UFT/
***************
biological replicate number: 2
technical replicate number: 1
description: ZFX ChIP-seq on human C4-2B
experiment encode accession: ENCSR027UFT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR585FQO
encode release date: 2017-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB876TKQ
size range: 450-650

source_name: Homo sapiens C4-2B immortalized cell line

value: ZFX

value: Michael Snyder, Stanford

value: prostate adenocarcinoma

value: 50 year

value: ENCBS728XMM at ENCODE; https://www.encodeproject.org/ENCBS728XMM/

value: derived from ENCODE donor ENCDO000ACX; https://www.encodeproject.org/ENCDO000ACX/


title: ChIP-seq from adrenal gland (ENCLB481DIR)

description:
https://www.encodeproject.org/experiments/ENCSR091EBM/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human adrenal gland
experiment encode accession: ENCSR091EBM
assay title: ChIP-seq
encode release date: 2016-11-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB481DIR
size range: 450-650

source_name: Homo sapiens adrenal gland tissue male adult (37 years)

value: Control

value: adrenal gland

value: 37 year

value: adult

value: ENCBS693ETI at ENCODE; https://www.encodeproject.org/ENCBS693ETI/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from C4-2B (ENCLB154SDC)

description:
https://www.encodeproject.org/experiments/ENCSR027UFT/
***************
biological replicate number: 1
technical replicate number: 1
description: ZFX ChIP-seq on human C4-2B
experiment encode accession: ENCSR027UFT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR585FQO
encode release date: 2017-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB154SDC
size range: 450-650

value: immortalized cell line

value: ENCBS947VNK at ENCODE; https://www.encodeproject.org/ENCBS947VNK/


title: ChIP-seq from esophagus squamous epithelium (ENCLB813TAN)

description:
https://www.encodeproject.org/experiments/ENCSR156UQO/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human esophagus squamous epithelium
experiment encode accession: ENCSR156UQO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR253FAH
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB813TAN
size range: 450-650

source_name: Homo sapiens esophagus squamous epithelium tissue male adult (37 years)

value: esophagus squamous epithelium

value: tissue

value: male

value: ENCBS312CXQ at ENCODE; https://www.encodeproject.org/ENCBS312CXQ/


title: ChIP-seq from omental fat pad (ENCLB253ZGP)

description:
https://www.encodeproject.org/experiments/ENCSR088FBX/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Wed Aug 24 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR088FBX
assay title: ChIP-seq
encode release date: 2016-11-09
lab: Richard Myers, HAIB
library encode accession: ENCLB253ZGP

source_name: Homo sapiens omental fat pad tissue female adult (51 year)

extract_protocol: extraction method: see document

value: omental fat pad

value: female

value: Richard Myers, HAIB

value: 51 year

value: ENCBS731YFH at ENCODE; https://www.encodeproject.org/ENCBS731YFH/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/ca36e48a-350e-471d-a2fb-155eeb61054b/@@download/attachment/84257.svs


title: ChIP-seq from thyroid gland (ENCLB749QTV)

description:
https://www.encodeproject.org/experiments/ENCSR144QLB/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human thyroid gland
experiment encode accession: ENCSR144QLB
assay title: ChIP-seq
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB749QTV
size range: 450-650

source_name: Homo sapiens thyroid gland tissue female adult (51 year)

value: Control

value: thyroid gland

value: Michael Snyder, Stanford

value: ENCBS413MJK at ENCODE; https://www.encodeproject.org/ENCBS413MJK/


title: ChIP-seq from esophagus squamous epithelium (ENCLB321BLN)

description:
https://www.encodeproject.org/experiments/ENCSR153OQA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human esophagus squamous epithelium
experiment encode accession: ENCSR153OQA
assay title: ChIP-seq
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB321BLN
size range: 450-650

source_name: Homo sapiens esophagus squamous epithelium tissue male adult (54 years)

value: 54 year

value: adult

value: ENCBS278PSF at ENCODE; https://www.encodeproject.org/ENCBS278PSF/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from K562 (ENCLB428KJP)

description:
https://www.encodeproject.org/experiments/ENCSR024CNP/
***************
biological replicate number: 2
technical replicate number: 1
description: EGR1 ChIP-seq on human K562
experiment encode accession: ENCSR024CNP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB428KJP
size range: 450-650

value: immortalized cell line

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS562NAQ at ENCODE; https://www.encodeproject.org/ENCBS562NAQ/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from gastroesophageal sphincter (ENCLB029YPT)

description:
https://www.encodeproject.org/experiments/ENCSR088VUG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on esophagogastric junction
experiment encode accession: ENCSR088VUG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR023BPG
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB029YPT

source_name: Homo sapiens gastroesophageal sphincter tissue female adult (53 years)

value: gastroesophageal sphincter

value: tissue

value: female

value: Richard Myers, HAIB

value: ENCBS698PJH at ENCODE; https://www.encodeproject.org/ENCBS698PJH/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/53362522-a4f5-4fec-a751-c175f163747e/@@download/attachment/83381.svs


title: ChIP-seq from K562 (ENCLB345UGA)

description:
https://www.encodeproject.org/experiments/ENCSR024CNP/
***************
biological replicate number: 1
technical replicate number: 1
description: EGR1 ChIP-seq on human K562
experiment encode accession: ENCSR024CNP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR658AGP
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB345UGA
size range: 450-650

value: Michael Snyder, Stanford

value: ENCBS538DYC at ENCODE; https://www.encodeproject.org/ENCBS538DYC/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from gastrocnemius medialis (ENCLB729RYM)

description:
https://www.encodeproject.org/experiments/ENCSR139VAY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human gastrocnemius medialis
experiment encode accession: ENCSR139VAY
assay title: ChIP-seq
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB729RYM
size range: 450-650

source_name: Homo sapiens gastrocnemius medialis tissue female adult (51 year)

value: Control

value: gastrocnemius medialis

value: 51 year

value: adult

value: ENCBS668EWD at ENCODE; https://www.encodeproject.org/ENCBS668EWD/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from K562 (ENCLB628FLS)

description:
https://www.encodeproject.org/experiments/ENCSR084AIG/
***************
biological replicate number: 1
technical replicate number: 1
description: Control ChIP-seq in K562
experiment encode accession: ENCSR084AIG
assay title: ChIP-seq
encode release date: 2017-02-15
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB628FLS
size range: 200-400

value: immortalized cell line

value: Control ChIP-seq in K562

value: Xiang-Dong Fu, UCSD

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS168OEK at ENCODE; https://www.encodeproject.org/ENCBS168OEK/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB580EBG)

description:
https://www.encodeproject.org/experiments/ENCSR084AIG/
***************
biological replicate number: 2
technical replicate number: 1
description: Control ChIP-seq in K562
experiment encode accession: ENCSR084AIG
assay title: ChIP-seq
encode release date: 2017-02-15
lab: Xiang-Dong Fu, UCSD
library encode accession: ENCLB580EBG
size range: 200-400

value: female

value: ENCBS990OSB at ENCODE; https://www.encodeproject.org/ENCBS990OSB/


title: ChIP-seq from esophagus squamous epithelium (ENCLB463IEN)

description:
https://www.encodeproject.org/experiments/ENCSR147PYL/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human esophagus squamous epithelium
experiment encode accession: ENCSR147PYL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR746FMO
encode release date: 2017-04-04
lab: Michael Snyder, Stanford
library encode accession: ENCLB463IEN
size range: 450-650

source_name: Homo sapiens esophagus squamous epithelium tissue female adult (53 years)

value: esophagus squamous epithelium

value: tissue

value: Michael Snyder, Stanford

value: ENCBS927UKP at ENCODE; https://www.encodeproject.org/ENCBS927UKP/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: N-SPEN_untreated

city: Bergen

first: Tomasz

last: Stokowy

address: Nygardsgaten 5

department: IT Division

country: Norway

institute: University of Bergen

data_processing:
Reads were mapped to the mouse genome (mm10) with Bowtie2.
Aligned files were converted to bam and sorted using Samtools.
Peaks detection was carried with case-control strategy (detected peaks are given in bed files)
SPEN target sites were annotated to genomic regions using HOMER software (annotated binding sites are given in text file)
Genome_build: mm10
Supplementary_files_format_and_content: bed - detected peaks, can be open in text editors/Excel; txt - annotated binding sites, can be opened in text editors/Excel.

organism: Mus musculus

source_name: testicular cells

growth_protocol: Testicular cells for ChIP experiments were collected after collagenase type IA digestion of decapsulated testes (1mg/ml in CO2 saturated RPMI medium for 20 min at 32°C in a shaking water bath operated at 120 cycles/min). The dispersed seminiferous tubules were isolated by allowing them to sediment for 2-3 min under 5% CO2 in air and decanting the supernatant. The process was repeated 3 times with 10 ml RPMI to stop the reaction and to ensure removal of the dissociated interstitial cells and blood cells. Cell aggregates were dissociated gently by repeated pipetting for 3-5 min. Cells were suspended in CO2 saturated RPMI medium supplemented with 10% (v/v) fetal bovine serum, 0.004% (v/v) gentamycin (KRKA), and 6mM sodium lactate (Sigma) at 32°C (physiological temperature of testes). Population of cells enriched in spermatocytes (up to 80%) was obtained by unit gravity sedimentation of testicular cells obtained after enzymatic treatment (collagenase type IA, trypsin, and DNase I)  in a Sta-Put chamber (SP-120, ProScience Inc, Ontario, Canada) containing a 1-3% (w/v) linear BSA gradient in PBS. Finally cells were suspended in RPMI medium as the mixture of testicular cells.

extract_protocol:
The ChIP assay was carried out according to the protocol of a ChIP kit from Upstate Biotechnology (Lake Placid, NY) using protein A-sepharose beads (Amersham). Standard crosslinking procedure was used. For each IP reaction 48-50 µg of chromatin sonicated to 100-500 bp fragments and 5 µg of anti-SPEN polyclonal antibodies, or IgG from rabbit serum (Sigma) as a negative control were used. Immunoprecipitated DNA was additionally digested by RNase A (in a final concentration 70 μg/ml, 30 minutes, 37°C) before Proteinase K treatment and organic solvents extraction. Glycogen (70 μg/ml) was added at the precipitation step. DNA was dissolved in H2O. In each experimental point five to six ChIP replicates were collected and combined in one sample before DNA sequencing.
Sequencing libraries were generated using KAPA library preparation kit (for Illumina) KK8201. Template amplification and cluster generation were performed using the TruSeq SBS Kit.

treatment_protocol: For heat shock, equal volumes of CO2 saturated, pre-heated media (to 53°C or 60°C) were added to the cells suspensions, which immediately raised their temperature from 32°C (physiological temperature) to 38°C or 43°C, respectively. Tubes were submerged in a water bath at the appropriate temperature for an additional 15-30 minutes with recovery at 32°C in a cell culture incubator.

tag: strain

value: FVB/N

value: male

value: adult (10-16 weeks)

tag: tissue/cells

value: testes

tag: chip antibody

value: N-terminal SPEN ( Abnova, PAB20849)

tag: treatment

value: untreated control


title: ChIP-seq from uterus (ENCLB733JIJ)

description:
https://www.encodeproject.org/experiments/ENCSR142SQX/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human uterus
experiment encode accession: ENCSR142SQX
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR948PSS
encode release date: 2016-12-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB733JIJ
size range: 450-650

source_name: Homo sapiens uterus tissue female adult (53 years)

value: uterus

value: adult

value: ENCBS201ZAR at ENCODE; https://www.encodeproject.org/ENCBS201ZAR/


title: ChIP-seq from HEK293 (ENCLB150SGT)

description:
https://www.encodeproject.org/experiments/ENCSR028EGI/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF26 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR028EGI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB150SGT
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF26 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF26 under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS415OTP at ENCODE; https://www.encodeproject.org/ENCBS415OTP/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from stomach (ENCLB906SOT)

description:
https://www.encodeproject.org/experiments/ENCSR081KET/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human stomach
experiment encode accession: ENCSR081KET
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB906SOT
size range: 450-650

source_name: Homo sapiens stomach tissue male adult (54 years)

value: Control

value: stomach

value: tissue

value: Michael Snyder, Stanford

value: 54 year

value: ENCBS424ANS at ENCODE; https://www.encodeproject.org/ENCBS424ANS/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from liver (ENCLB437TOV)

description:
https://www.encodeproject.org/experiments/ENCSR080XEY/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on FOXA2-human
experiment encode accession: ENCSR080XEY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR904IXG, ENCSR849OTN
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB437TOV

source_name: Homo sapiens liver tissue female child (4 years)

value: liver

value: Human liver tissue obtained from a healthy, 4 year old female donor

value: 4 year

value: child

value: female

value: healthy

value: ENCBS401URL at ENCODE; https://www.encodeproject.org/ENCBS401URL/

value: Derived from ENCODE donor ENCDO882MMZ; https://www.encodeproject.org/ENCDO882MMZ/


title: ChIP-seq from adrenal gland (ENCLB255SAN)

description:
https://www.encodeproject.org/experiments/ENCSR135FYV/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human adrenal gland
experiment encode accession: ENCSR135FYV
assay title: ChIP-seq
encode release date: 2016-11-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB255SAN
size range: 450-650

source_name: Homo sapiens adrenal gland tissue male adult (54 years)

value: adrenal gland

value: male

value: adult

value: ENCBS063ABX at ENCODE; https://www.encodeproject.org/ENCBS063ABX/


title: ChIP-seq from liver (ENCLB139RRF)

description:
https://www.encodeproject.org/experiments/ENCSR080XEY/
***************
biological replicate number: 2
technical replicate number: 1
description: Chip-Seq on FOXA2-human
experiment encode accession: ENCSR080XEY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR904IXG, ENCSR849OTN
encode release date: 2016-06-30
lab: Richard Myers, HAIB
library encode accession: ENCLB139RRF

value: tissue


title: Hi-C from G401 (ENCLB506SDM)

description:
https://www.encodeproject.org/experiments/ENCSR079VIJ/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on G401
experiment encode accession: ENCSR079VIJ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB506SDM

source_name: Homo sapiens G401 immortalized cell line

value: immortalized cell line

value: 3 month

value: John Stamatoyannopoulos, UW

value: ENCBS062JBT at ENCODE; https://www.encodeproject.org/ENCBS062JBT/

value: Derived from ENCODE donor ENCDO572LRN; https://www.encodeproject.org/ENCDO572LRN/

value: ENCODE dbxrefs Cellosaurus CVCL_0270; http://web.expasy.org/cellosaurus/CVCL_0270


title: ChIP-seq from gastrocnemius medialis (ENCLB930GFU)

description:
https://www.encodeproject.org/experiments/ENCSR126QXT/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human gastrocnemius medialis
experiment encode accession: ENCSR126QXT
assay title: ChIP-seq
encode release date: 2017-02-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB930GFU
size range: 450-650

source_name: Homo sapiens gastrocnemius medialis tissue male adult (54 years)

value: Control

value: gastrocnemius medialis

value: Michael Snyder, Stanford

value: 54 year

value: ENCBS291EBC at ENCODE; https://www.encodeproject.org/ENCBS291EBC/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from subcutaneous adipose tissue (ENCLB879AGN)

description:
https://www.encodeproject.org/experiments/ENCSR078CBW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human adipose tissue
experiment encode accession: ENCSR078CBW
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB879AGN
size range: 450-650

source_name: Homo sapiens subcutaneous adipose tissue female adult (53 years)

value: subcutaneous adipose tissue

value: female

value: 53 year

value: ENCBS108OCK at ENCODE; https://www.encodeproject.org/ENCBS108OCK/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from transverse colon (ENCLB190IHO)

description:
https://www.encodeproject.org/experiments/ENCSR132XRW/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human transverse colon
experiment encode accession: ENCSR132XRW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR799YAO
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB190IHO
size range: 450-650

source_name: Homo sapiens transverse colon tissue male adult (54 years)

value: transverse colon

value: tissue

value: male

value: adult

value: ENCBS866IBT at ENCODE; https://www.encodeproject.org/ENCBS866IBT/


title: Hi-C from G401 (ENCLB589RBY)

description:
https://www.encodeproject.org/experiments/ENCSR079VIJ/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on G401
experiment encode accession: ENCSR079VIJ
assay title: Hi-C
assembly: hg19
encode release date: 2016-05-13
lab: Job Dekker, UMass
library encode accession: ENCLB589RBY

value: immortalized cell line

value: 3 month

value: child

value: John Stamatoyannopoulos, UW

value: ENCBS659PBH at ENCODE; https://www.encodeproject.org/ENCBS659PBH/

value: Derived from ENCODE donor ENCDO572LRN; https://www.encodeproject.org/ENCDO572LRN/

value: ENCODE dbxrefs Cellosaurus CVCL_0270; http://web.expasy.org/cellosaurus/CVCL_0270


title: ChIP-seq from ovary (ENCLB201AGR)

description:
https://www.encodeproject.org/experiments/ENCSR118WAD/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human ovary
experiment encode accession: ENCSR118WAD
assay title: ChIP-seq
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB201AGR
size range: 450-650

source_name: Homo sapiens ovary tissue female adult (51 year)

value: Control

value: ovary

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS600YTL at ENCODE; https://www.encodeproject.org/ENCBS600YTL/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from omental fat pad (ENCLB787SDI)

description:
https://www.encodeproject.org/experiments/ENCSR117KTL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human omental fat pad
experiment encode accession: ENCSR117KTL
assay title: ChIP-seq
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB787SDI
size range: 450-650

source_name: Homo sapiens omental fat pad tissue female adult (51 year)

value: omental fat pad

value: tissue

value: female

value: ENCBS971HUW at ENCODE; https://www.encodeproject.org/ENCBS971HUW/


title: ChIP-seq from prostate gland (ENCLB415GMR)

description:
https://www.encodeproject.org/experiments/ENCSR122LGV/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human prostate gland
experiment encode accession: ENCSR122LGV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR499JBP
encode release date: 2017-04-04
lab: Michael Snyder, Stanford
library encode accession: ENCLB415GMR
size range: 450-650

source_name: Homo sapiens prostate gland tissue male adult (54 years)

value: prostate gland

value: male

value: 54 year

value: adult

value: ENCBS400XYQ at ENCODE; https://www.encodeproject.org/ENCBS400XYQ/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from HEK293 (ENCLB368XPV)

description:
https://www.encodeproject.org/experiments/ENCSR076KZW/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF280C ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR076KZW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB368XPV
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF280C fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF280C under the control of a CMV promoter.

value: unknown

value: embryonic

value: ENCBS321CYC at ENCODE; https://www.encodeproject.org/ENCBS321CYC/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from gastroesophageal sphincter (ENCLB935OYE)

description:
https://www.encodeproject.org/experiments/ENCSR023BPG/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Tue Sep 20 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR023BPG
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB935OYE

source_name: Homo sapiens gastroesophageal sphincter tissue female adult (53 years)

value: Control

value: gastroesophageal sphincter

value: Richard Myers, HAIB

value: 53 year

value: ENCBS698PJH at ENCODE; https://www.encodeproject.org/ENCBS698PJH/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/53362522-a4f5-4fec-a751-c175f163747e/@@download/attachment/83381.svs


title: ChIP-seq from MCF-7 (ENCLB249QHK)

description:
https://www.encodeproject.org/experiments/ENCSR116QUR/
***************
biological replicate number: 1
technical replicate number: 1
description: CSDE1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR116QUR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB249QHK
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: female

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS726ASX at ENCODE; https://www.encodeproject.org/ENCBS726ASX/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from MCF-7 (ENCLB455KAV)

description:
https://www.encodeproject.org/experiments/ENCSR116QUR/
***************
biological replicate number: 2
technical replicate number: 1
description: CSDE1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR116QUR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK
encode release date: 2017-06-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB455KAV
size range: 450-650

value: immortalized cell line

value: adult

value: ENCBS028FSB at ENCODE; https://www.encodeproject.org/ENCBS028FSB/


title: ChIP-seq from RWPE1 (ENCLB154ZKP)

description:
https://www.encodeproject.org/experiments/ENCSR203KEU/
***************
biological replicate number: 1
technical replicate number: 1
description: H3K27ac ChIP-seq on human RWPE1
experiment encode accession: ENCSR203KEU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR248IFK
encode release date: 2017-03-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB154ZKP
size range: 450-650

source_name: Homo sapiens RWPE1 immortalized cell line

value: male

value: normal

value: 54 year

value: ENCBS192LWI at ENCODE; https://www.encodeproject.org/ENCBS192LWI/

value: derived from ENCODE donor ENCDO000ADM; https://www.encodeproject.org/ENCDO000ADM/


title: ChIP-seq from testis (ENCLB573RXN)

description:
https://www.encodeproject.org/experiments/ENCSR036LUN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human testis
experiment encode accession: ENCSR036LUN
assay title: ChIP-seq
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB573RXN
size range: 450-650

source_name: Homo sapiens testis tissue male adult (37 years)

value: Control

value: testis

value: tissue

value: 37 year

value: ENCBS133MOQ at ENCODE; https://www.encodeproject.org/ENCBS133MOQ/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HEK293 (ENCLB640KXU)

description:
https://www.encodeproject.org/experiments/ENCSR076KZW/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF280C ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR076KZW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB640KXU
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF280C under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS348FEH at ENCODE; https://www.encodeproject.org/ENCBS348FEH/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from heart left ventricle (ENCLB285OQA)

description:
https://www.encodeproject.org/experiments/ENCSR035ELI/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human heart left ventricle
experiment encode accession: ENCSR035ELI
assay title: ChIP-seq
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB285OQA
size range: 450-650

source_name: Homo sapiens heart left ventricle tissue female adult (53 years)

value: heart left ventricle

value: 53 year

value: adult

value: ENCBS106FXL at ENCODE; https://www.encodeproject.org/ENCBS106FXL/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from HepG2 (ENCLB870SCL)

description:
https://www.encodeproject.org/experiments/ENCSR066EBK/
***************
biological replicate number: 2
technical replicate number: 1
description: FOXA2 ChIP-seq on human HepG2
experiment encode accession: ENCSR066EBK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB870SCL
size range: 450-650

source_name: Homo sapiens HepG2 immortalized cell line

value: immortalized cell line

value: Hepatocellular carcinoma

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS716YFX at ENCODE; https://www.encodeproject.org/ENCBS716YFX/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from RWPE1 (ENCLB807RBV)

description:
https://www.encodeproject.org/experiments/ENCSR203KEU/
***************
biological replicate number: 2
technical replicate number: 1
description: H3K27ac ChIP-seq on human RWPE1
experiment encode accession: ENCSR203KEU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR248IFK
encode release date: 2017-03-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB807RBV
size range: 450-650

value: Michael Snyder, Stanford

value: normal

value: 54 year

value: ENCBS124FCL at ENCODE; https://www.encodeproject.org/ENCBS124FCL/

value: derived from ENCODE donor ENCDO000ADM; https://www.encodeproject.org/ENCDO000ADM/


title: ChIP-seq from HEK293 (ENCLB591UUE)

description:
https://www.encodeproject.org/experiments/ENCSR019WUS/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF10 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR019WUS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR468NLK, ENCSR110ZVM, ENCSR260MAS, ENCSR873PPH, ENCSR851FFP, ENCSR523KUQ, ENCSR236FPN, ENCSR860UAT, ENCSR398UVH, ENCSR840JVQ, ENCSR499QIO, ENCSR679WSJ, ENCSR736BTL, ENCSR537CWQ, ENCSR316OQD, ENCSR278MZO, ENCSR603CJM, ENCSR361UQO, ENCSR499OOH, ENCSR123TVS, ENCSR049NDP, ENCSR311DYU, ENCSR782QKO
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB591UUE
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF10 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF10 under the control of a CMV promoter.

value: female

value: unknown

value: embryonic

value: ENCBS942NZU at ENCODE; https://www.encodeproject.org/ENCBS942NZU/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HepG2 (ENCLB480XHG)

description:
https://www.encodeproject.org/experiments/ENCSR066EBK/
***************
biological replicate number: 1
technical replicate number: 1
description: FOXA2 ChIP-seq on human HepG2
experiment encode accession: ENCSR066EBK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB480XHG
size range: 450-650

value: immortalized cell line

value: child

value: 15 year

value: male

value: ENCBS731WFK at ENCODE; https://www.encodeproject.org/ENCBS731WFK/


title: ChIP-seq from HEK293 (ENCLB042NQJ)

description:
https://www.encodeproject.org/experiments/ENCSR019WUS/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF10 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR019WUS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR468NLK, ENCSR110ZVM, ENCSR260MAS, ENCSR873PPH, ENCSR851FFP, ENCSR523KUQ, ENCSR236FPN, ENCSR860UAT, ENCSR398UVH, ENCSR840JVQ, ENCSR499QIO, ENCSR679WSJ, ENCSR736BTL, ENCSR537CWQ, ENCSR316OQD, ENCSR278MZO, ENCSR603CJM, ENCSR361UQO, ENCSR499OOH, ENCSR123TVS, ENCSR049NDP, ENCSR311DYU, ENCSR782QKO
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB042NQJ
size range: 450-650

value: ENCBS958UZO at ENCODE; https://www.encodeproject.org/ENCBS958UZO/


title: ChIP-seq from A549 (ENCLB221OEV)

description:
https://www.encodeproject.org/experiments/ENCSR064LJN/
***************
biological replicate number: 3
technical replicate number: 1
description: RFX5 ChIP-seq on human A549
experiment encode accession: ENCSR064LJN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB221OEV
size range: 450-650

source_name: Homo sapiens A549 immortalized cell line

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: adult

value: 58 year

value: Michael Snyder, Stanford

value: ENCBS848SUF at ENCODE; https://www.encodeproject.org/ENCBS848SUF/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: ChIP-seq from A549 (ENCLB189SWO)

description:
https://www.encodeproject.org/experiments/ENCSR064LJN/
***************
biological replicate number: 2
technical replicate number: 1
description: RFX5 ChIP-seq on human A549
experiment encode accession: ENCSR064LJN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB189SWO
size range: 450-650

value: ENCBS611JSC at ENCODE; https://www.encodeproject.org/ENCBS611JSC/


title: ChIP-seq from prostate gland (ENCLB253LYU)

description:
https://www.encodeproject.org/experiments/ENCSR109IEL/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human prostate gland
experiment encode accession: ENCSR109IEL
assay title: ChIP-seq
encode release date: 2016-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB253LYU
size range: 450-650

value: Control

value: prostate gland

value: tissue

value: 54 year

value: ENCBS282GPE at ENCODE; https://www.encodeproject.org/ENCBS282GPE/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: ChIP-seq from RWPE1 (ENCLB495RTI)

description:
https://www.encodeproject.org/experiments/ENCSR061MKW/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human Prostate epithelial
experiment encode accession: ENCSR061MKW
assay title: ChIP-seq
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB495RTI
size range: 450-650

value: immortalized cell line

value: male

value: normal

value: ENCBS192LWI at ENCODE; https://www.encodeproject.org/ENCBS192LWI/

value: derived from ENCODE donor ENCDO000ADM; https://www.encodeproject.org/ENCDO000ADM/


title: ChIP-seq from upper lobe of left lung (ENCLB110HYG)

description:
https://www.encodeproject.org/experiments/ENCSR033NHF/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human upper lobe of left lung
experiment encode accession: ENCSR033NHF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR388VGR
encode release date: 2017-04-04
lab: Michael Snyder, Stanford
library encode accession: ENCLB110HYG
size range: 450-650

source_name: Homo sapiens upper lobe of left lung tissue male adult (54 years)

value: upper lobe of left lung

value: Michael Snyder, Stanford

value: adult

value: ENCBS707MSC at ENCODE; https://www.encodeproject.org/ENCBS707MSC/


title: ChIP-seq from K562 (ENCLB320WIE)

description:
https://www.encodeproject.org/experiments/ENCSR200JYP/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF316 ChIP-seq on human K562
experiment encode accession: ENCSR200JYP
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR173USI, ENCSR632PAG
encode release date: 2017-02-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB320WIE
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS576ESJ at ENCODE; https://www.encodeproject.org/ENCBS576ESJ/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB822CTA)

description:
https://www.encodeproject.org/experiments/ENCSR200JYP/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF316 ChIP-seq on human K562
experiment encode accession: ENCSR200JYP
assay title: ChIP-seq
assembly: GRCh38
possible controls: ENCSR173USI, ENCSR632PAG
encode release date: 2017-02-03
lab: Michael Snyder, Stanford
library encode accession: ENCLB822CTA
size range: 450-650

value: ENCBS839CNN at ENCODE; https://www.encodeproject.org/ENCBS839CNN/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from RWPE1 (ENCLB289ZPO)

description:
https://www.encodeproject.org/experiments/ENCSR061MKW/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human Prostate epithelial
experiment encode accession: ENCSR061MKW
assay title: ChIP-seq
encode release date: 2017-01-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB289ZPO
size range: 450-650

value: Control

value: immortalized cell line

value: male

value: 54 year

value: ENCBS124FCL at ENCODE; https://www.encodeproject.org/ENCBS124FCL/


title: ChIP-seq from gastrocnemius medialis (ENCLB374GLQ)

description:
https://www.encodeproject.org/experiments/ENCSR103UPR/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human gastrocnemius medialis
experiment encode accession: ENCSR103UPR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR394RPZ
encode release date: 2017-03-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB374GLQ
size range: 450-650

source_name: Homo sapiens gastrocnemius medialis tissue female adult (53 years)

value: gastrocnemius medialis

value: tissue

value: Michael Snyder, Stanford

value: ENCBS429IGV at ENCODE; https://www.encodeproject.org/ENCBS429IGV/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from GM12878 (ENCLB339BXX)

description:
https://www.encodeproject.org/experiments/ENCSR014YCR/
***************
biological replicate number: 2
technical replicate number: 1
description: ATF7 ChIP-seq on human GM12878
experiment encode accession: ENCSR014YCR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB339BXX
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: adult

value: female

value: unknown

value: ENCBS339VHO at ENCODE; https://www.encodeproject.org/ENCBS339VHO/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526


title: ChIP-seq from omental fat pad (ENCLB151YDR)

description:
https://www.encodeproject.org/experiments/ENCSR047DRF/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on adipose tissue of omentum
experiment encode accession: ENCSR047DRF
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR377VHO
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB151YDR

source_name: Homo sapiens omental fat pad tissue male adult (54 years)

value: omental fat pad

value: Richard Myers, HAIB

value: ENCBS549WYP at ENCODE; https://www.encodeproject.org/ENCBS549WYP/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/6fc7fb1a-fb8d-40a9-9e2d-88c59605f3f9/@@download/attachment/82362.svs


title: ChIP-seq from adrenal gland (ENCLB552BUI)

description:
https://www.encodeproject.org/experiments/ENCSR031KWR/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human adrenal gland
experiment encode accession: ENCSR031KWR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR015WSU
encode release date: 2017-04-04
lab: Michael Snyder, Stanford
library encode accession: ENCLB552BUI
size range: 450-650

source_name: Homo sapiens adrenal gland tissue female adult (53 years)

value: adrenal gland

value: 53 year

value: ENCBS276BKM at ENCODE; https://www.encodeproject.org/ENCBS276BKM/


title: ChIP-seq from GM12878 (ENCLB591TTK)

description:
https://www.encodeproject.org/experiments/ENCSR014YCR/
***************
biological replicate number: 1
technical replicate number: 1
description: ATF7 ChIP-seq on human GM12878
experiment encode accession: ENCSR014YCR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB591TTK
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: ENCBS389LEA at ENCODE; https://www.encodeproject.org/ENCBS389LEA/


title: CLIP_SFPQ_3

city: Nice

first: Silvia

last: Bottini

address: 299, chemin de la ginestiere

country: France

library_source: transcriptomic

data_processing:
Reads were trimmed with the program cutadapt and reads shorter than 15 nt were discarded
filtering versus mouse ribosomal RNA with bowtie2
Mapping of reads onto mouse genome mm10 was performed with STAR, than bowtie2
Genome_build: mm10
Supplementary_files_format_and_content: differential peaks were identified with dCLIP software. Peaks from differential CLIP were compared calculating the Jaccard index. In the excel files are reported Ago2 peaks dismissed or recruited in absence of Sfpq, Sfpq peak,s Ago2 peaks and Ago2+let-7a peaks.

molecule: total RNA

source_name: mouse stem cell

extract_protocol:
RNA was recovered from the nitrocellulose using Proteinase K treatment followed by phenol–chloroform extraction and ethanol precipitation. Isolated RNA were subjected to small RNA libraries preparation (New England Biolabs), following the manufacturer’s instructions.
cDNA products were then subjected to PCR amplification for 20–24 cycles and size-fractionated on columns. PCR products representing cDNA inserts of 20–50 nts were recovered and subject to sequencing on a Ion Proton™ System for Next-Generation Sequencing

tag: hits-clip antibody

value: Ab38148 from Abcam and B92 from Fischer Scientific

tag: cell type

value: P19 cell

tag: condition

value: HITS-CLIP in control


title: CLIP_SFPQ_siSFPQ_1

value: HITS-CLIP in SFPQ knockdown


title: CLIP_SFPQ_siSFPQ_3


title: ChIP-seq from HepG2 (ENCLB885QIC)

description:
https://www.encodeproject.org/experiments/ENCSR047BUZ/
***************
biological replicate number: 2
technical replicate number: 1
description: ATF2 ChIP-seq on human HepG2
experiment encode accession: ENCSR047BUZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB885QIC
size range: 450-650

value: child

value: male

value: 15 year

value: hepatocellular carcinoma

tag: lab

value: ENCBS225ERF at ENCODE; https://www.encodeproject.org/ENCBS225ERF/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: CLIP_SFPQ_siSFPQ_2


title: ChIP-seq from transverse colon (ENCLB783BRJ)

description:
https://www.encodeproject.org/experiments/ENCSR102CSD/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human transverse colon
experiment encode accession: ENCSR102CSD
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR009MWG
encode release date: 2016-10-25
lab: Michael Snyder, Stanford
library encode accession: ENCLB783BRJ
size range: 450-650

source_name: Homo sapiens transverse colon tissue male adult (37 years)

value: CTCF

value: transverse colon

value: tissue

value: 37 year

value: adult

tag: link

value: ENCBS572ESP at ENCODE; https://www.encodeproject.org/ENCBS572ESP/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from HEK293 (ENCLB397PBM)

description:
https://www.encodeproject.org/experiments/ENCSR096LSN/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF311 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR096LSN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB397PBM
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZNF311 fusion protein

tag: antibody

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF311 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS827PYY at ENCODE; https://www.encodeproject.org/ENCBS827PYY/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from esophagus muscularis mucosa (ENCLB291GKH)

description:
https://www.encodeproject.org/experiments/ENCSR014XSP/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Wed Sep 07 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR014XSP
assay title: ChIP-seq
encode release date: 2017-02-02
lab: Richard Myers, HAIB
library encode accession: ENCLB291GKH

source_name: Homo sapiens esophagus muscularis mucosa tissue male adult (37 years)

value: Control

value: esophagus muscularis mucosa

value: male

value: Richard Myers, HAIB

value: ENCBS243YQD at ENCODE; https://www.encodeproject.org/ENCBS243YQD/


title: ChIP-seq from HepG2 (ENCLB668UTD)

description:
https://www.encodeproject.org/experiments/ENCSR047BUZ/
***************
biological replicate number: 1
technical replicate number: 1
description: ATF2 ChIP-seq on human HepG2
experiment encode accession: ENCSR047BUZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR770GTP, ENCSR121CWV
encode release date: 2016-07-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB668UTD
size range: 450-650

tag: line

value: Hepatocellular carcinoma

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS591PPP at ENCODE; https://www.encodeproject.org/ENCBS591PPP/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB930NWF)

description:
https://www.encodeproject.org/experiments/ENCSR096LSN/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF311 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR096LSN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB930NWF
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF311 under the control of a CMV promoter.

tag: biosample encode accession

value: female

value: Michael Snyder, Stanford

value: unknown

value: ENCBS418NKF at ENCODE; https://www.encodeproject.org/ENCBS418NKF/


title: CLIP_SFPQ_2

value: Ab38148 from Abcam and B92 from Fischer Scientific

value: P19 cell

value: HITS-CLIP in control


title: ChIP-seq from omental fat pad (ENCLB648XPW)

description:
https://www.encodeproject.org/experiments/ENCSR089DTY/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human omental fat pad
experiment encode accession: ENCSR089DTY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR480WKY
encode release date: 2017-06-23
lab: Michael Snyder, Stanford
library encode accession: ENCLB648XPW
size range: 450-650

source_name: Homo sapiens omental fat pad tissue male adult (37 years)

value: CTCF

value: omental fat pad

value: tissue

tag: Sex

value: male

value: 37 year

value: adult

value: ENCBS666LUO at ENCODE; https://www.encodeproject.org/ENCBS666LUO/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from upper lobe of left lung (ENCLB718UZC)

description:
https://www.encodeproject.org/experiments/ENCSR027FSZ/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human upper lobe of left lung
experiment encode accession: ENCSR027FSZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR062MVC
encode release date: 2016-12-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB718UZC
size range: 450-650

source_name: Homo sapiens upper lobe of left lung tissue male adult (37 years)

value: upper lobe of left lung

value: ENCBS089HGD at ENCODE; https://www.encodeproject.org/ENCBS089HGD/


title: ChIP-seq from testis (ENCLB957YZF)

description:
https://www.encodeproject.org/experiments/ENCSR046INL/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on testis
experiment encode accession: ENCSR046INL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR666SXC
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB957YZF

source_name: Homo sapiens testis tissue male adult (37 years)

value: testis

value: Richard Myers, HAIB

value: ENCBS538CDU at ENCODE; https://www.encodeproject.org/ENCBS538CDU/


title: CLIP_SFPQ_1


title: CLIP_AGO2_siSFPQ_LET7_3

value: 2D4 clone from Wako Chemicals

value: Ago2 HITS-CLIP in SFPQ knockdown in let-7a transfection


title: ChIP-seq from K562 (ENCLB350TBY)

description:
https://www.encodeproject.org/experiments/ENCSR011PEI/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF175 ChIP-seq on human K562
experiment encode accession: ENCSR011PEI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR672RME
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB350TBY
size range: 200-800
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF175 fusion protein

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF175

value: female

value: Kevin White, UChicago

tag: passage number

tag: health state

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS200VWP at ENCODE; https://www.encodeproject.org/ENCBS200VWP/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_HA00; http://web.expasy.org/cellosaurus/CVCL_HA00


title: ChIP-seq from suprapubic skin (ENCLB490MIP)

description:
https://www.encodeproject.org/experiments/ENCSR025ZZA/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human suprapubic skin
experiment encode accession: ENCSR025ZZA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR475HOV
encode release date: 2017-04-04
lab: Michael Snyder, Stanford
library encode accession: ENCLB490MIP
size range: 450-650

source_name: Homo sapiens suprapubic skin tissue female adult (51 year)

value: suprapubic skin

value: tissue

value: Michael Snyder, Stanford

tag: age

value: 51 year

tag: dev stage

value: adult

value: ENCBS363BNF at ENCODE; https://www.encodeproject.org/ENCBS363BNF/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from body of pancreas (ENCLB132YGX)

description:
https://www.encodeproject.org/experiments/ENCSR079WBX/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human body of pancreas
experiment encode accession: ENCSR079WBX
assay title: ChIP-seq
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB132YGX
size range: 450-650

source_name: Homo sapiens body of pancreas tissue male adult (54 years)

value: Control

value: body of pancreas

value: male

value: 54 year

value: ENCBS867VCV at ENCODE; https://www.encodeproject.org/ENCBS867VCV/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: CLIP_AGO2_siSFPQ_2

value: 2D4 clone from Wako Chemicals

value: P19 cell

value: Ago2 HITS-CLIP in SFPQ knockdown in control


title: ChIP-seq from K562 (ENCLB477VIK)

description:
https://www.encodeproject.org/experiments/ENCSR011PEI/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF175 ChIP-seq on human K562
experiment encode accession: ENCSR011PEI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR672RME
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB477VIK
size range: 200-800
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: immortalized cell line

tag: description

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF175

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: ENCBS098BHX at ENCODE; https://www.encodeproject.org/ENCBS098BHX/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_HA00; http://web.expasy.org/cellosaurus/CVCL_HA00


title: CLIP_AGO2_siSFPQ_LET7_2

value: Ago2 HITS-CLIP in SFPQ knockdown in let-7a transfection


title: ChIP-seq from subcutaneous adipose tissue (ENCLB507ERK)

description:
https://www.encodeproject.org/experiments/ENCSR009SHE/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on -human (fragmentation date:Tue Aug 30 2016 00:00:00 GMT-0500 (CDT)
experiment encode accession: ENCSR009SHE
assay title: ChIP-seq
encode release date: 2016-11-09
lab: Richard Myers, HAIB
library encode accession: ENCLB507ERK

source_name: Homo sapiens subcutaneous adipose tissue male adult (54 years)

value: Control

value: subcutaneous adipose tissue

value: tissue

value: male

value: Richard Myers, HAIB

value: adult

value: ENCBS647IID at ENCODE; https://www.encodeproject.org/ENCBS647IID/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/8b93465d-d67d-4e4f-8142-0b05e2b14a95/@@download/attachment/82372.svs


title: ChIP-seq from thyroid gland (ENCLB856BJY)

description:
https://www.encodeproject.org/experiments/ENCSR088BOY/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human thyroid gland
experiment encode accession: ENCSR088BOY
assay title: ChIP-seq
encode release date: 2017-03-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB856BJY
size range: 450-650

source_name: Homo sapiens thyroid gland tissue female adult (51 year)

value: thyroid gland

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS413MJK at ENCODE; https://www.encodeproject.org/ENCBS413MJK/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: CLIP_AGO2_siSFPQ_3

value: 2D4 clone from Wako Chemicals

value: P19 cell

value: Ago2 HITS-CLIP in SFPQ knockdown in control


title: ChIP-seq from gastroesophageal sphincter (ENCLB333OST)

description:
https://www.encodeproject.org/experiments/ENCSR091CSG/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human gastroesophageal sphincter
experiment encode accession: ENCSR091CSG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR372QOY
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB333OST
size range: 450-650

source_name: Homo sapiens gastroesophageal sphincter tissue male adult (54 years)

value: gastroesophageal sphincter

value: 54 year

value: ENCBS805AZN at ENCODE; https://www.encodeproject.org/ENCBS805AZN/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: Hi-C from astrocyte of the cerebellum (ENCLB672PAB)

description:
https://www.encodeproject.org/experiments/ENCSR011GNI/
***************
biological replicate number: 1
technical replicate number: 1
description: HiC experiment done on astrocyte of the cerebellum
experiment encode accession: ENCSR011GNI
assay title: Hi-C
assembly: hg19
encode release date: 2017-05-26
lab: Job Dekker, UMass
library encode accession: ENCLB672PAB

source_name: Homo sapiens astrocyte of the cerebellum primary cell

value: astrocyte of the cerebellum

value: primary cell

value: astrocytes-cerebellar

value: not collected

value: John Stamatoyannopoulos, UW

value: unknown

value: ENCBS303AAA at ENCODE; https://www.encodeproject.org/ENCBS303AAA/

value: derived from ENCODE donor ENCDO227AAA; https://www.encodeproject.org/ENCDO227AAA/

value: ENCODE dbxrefs HAc; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Hac

value: ScienCell sample source; http://www.sciencellonline.com/site/productDetails.php?keyword=1810


title: CLIP_AGO2_siSFPQ_LET7_1

value: 2D4 clone from Wako Chemicals

value: Ago2 HITS-CLIP in SFPQ knockdown in let-7a transfection


title: ChIP-seq from HEK293 (ENCLB057WEO)

description:
https://www.encodeproject.org/experiments/ENCSR074VAI/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZIK1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR074VAI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB057WEO
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZIK1 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZIK1 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: embryonic

value: ENCBS979VMT at ENCODE; https://www.encodeproject.org/ENCBS979VMT/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from tibial nerve (ENCLB072TCM)

description:
https://www.encodeproject.org/experiments/ENCSR154GUK/
***************
biological replicate number: 2
technical replicate number: 1
description: POLR2A ChIP-seq on human tibial nerve
experiment encode accession: ENCSR154GUK
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR510GIX
encode release date: 2017-04-04
lab: Michael Snyder, Stanford
library encode accession: ENCLB072TCM
size range: 450-650

source_name: Homo sapiens tibial nerve tissue female adult (51 year)

value: tibial nerve

value: tissue

value: 51 year

value: adult

value: ENCBS689AWK at ENCODE; https://www.encodeproject.org/ENCBS689AWK/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from HEK293 (ENCLB231NSS)

description:
https://www.encodeproject.org/experiments/ENCSR004PLU/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZBTB10 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR004PLU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB231NSS
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-ZBTB10 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZBTB10 under the control of a CMV promoter.

value: unknown

value: ENCBS137HOM at ENCODE; https://www.encodeproject.org/ENCBS137HOM/


title: ChIP-seq from HEK293 (ENCLB768TDT)

description:
https://www.encodeproject.org/experiments/ENCSR041ZIQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-SALL1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR041ZIQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB768TDT
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-SALL1 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-SALL1 under the control of a CMV promoter.

value: ENCBS933NCW at ENCODE; https://www.encodeproject.org/ENCBS933NCW/


title: ChIP-seq from GM12878 (ENCLB422RYD)

description:
https://www.encodeproject.org/experiments/ENCSR072PWP/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF24 ChIP-seq on human GM12878
experiment encode accession: ENCSR072PWP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-06-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB422RYD
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: immortalized cell line

value: ENCBS501RRP at ENCODE; https://www.encodeproject.org/ENCBS501RRP/

value: derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: CLIP_AGO2_LET7_1

source_name: mouse stem cell

value: 2D4 clone from Wako Chemicals

value: P19 cell

value: Ago2 HITS-CLIP in let-7a transfection


title: Hi-C from astrocyte of the cerebellum (ENCLB174TEA)

description:
https://www.encodeproject.org/experiments/ENCSR011GNI/
***************
biological replicate number: 2
technical replicate number: 1
description: HiC experiment done on astrocyte of the cerebellum
experiment encode accession: ENCSR011GNI
assay title: Hi-C
assembly: hg19
encode release date: 2017-05-26
lab: Job Dekker, UMass
library encode accession: ENCLB174TEA

value: astrocyte of the cerebellum

value: primary cell

value: astrocytes-cerebellar

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS115FPY at ENCODE; https://www.encodeproject.org/ENCBS115FPY/

value: derived from ENCODE donor ENCDO227AAA; https://www.encodeproject.org/ENCDO227AAA/

value: ENCODE dbxrefs HAc; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=Hac

value: ScienCell sample source; http://www.sciencellonline.com/human-astrocytes-cerebellar.html


title: CLIP_AGO2_LET7_3


title: ChIP-seq from HEK293 (ENCLB224ZAT)

description:
https://www.encodeproject.org/experiments/ENCSR074VAI/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZIK1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR074VAI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB224ZAT
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZIK1 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: unknown

value: embryonic

value: ENCBS853XGC at ENCODE; https://www.encodeproject.org/ENCBS853XGC/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB227MHI)

description:
https://www.encodeproject.org/experiments/ENCSR004PLU/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZBTB10 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR004PLU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB227MHI
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZBTB10 under the control of a CMV promoter.

value: ENCBS542HYG at ENCODE; https://www.encodeproject.org/ENCBS542HYG/


title: ChIP-seq from esophagus muscularis mucosa (ENCLB185XMK)

description:
https://www.encodeproject.org/experiments/ENCSR074SFL/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human esophagus muscularis mucosa
experiment encode accession: ENCSR074SFL
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR834ESZ
encode release date: 2017-03-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB185XMK
size range: 450-650

source_name: Homo sapiens esophagus muscularis mucosa tissue female adult (53 years)

value: CTCF

value: esophagus muscularis mucosa

value: tissue

value: 53 year

value: adult

value: ENCBS643MHO at ENCODE; https://www.encodeproject.org/ENCBS643MHO/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from GM12878 (ENCLB570CVM)

description:
https://www.encodeproject.org/experiments/ENCSR072PWP/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF24 ChIP-seq on human GM12878
experiment encode accession: ENCSR072PWP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2017-06-26
lab: Michael Snyder, Stanford
library encode accession: ENCLB570CVM
size range: 450-650

value: ENCBS397JTN at ENCODE; https://www.encodeproject.org/ENCBS397JTN/

value: derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: ChIP-seq from HEK293 (ENCLB879EFD)

description:
https://www.encodeproject.org/experiments/ENCSR041ZIQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-SALL1 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR041ZIQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB879EFD
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-SALL1 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: ENCBS308KSJ at ENCODE; https://www.encodeproject.org/ENCBS308KSJ/


title: CLIP_AGO2_siSFPQ_1

value: 2D4 clone from Wako Chemicals

value: P19 cell

value: Ago2 HITS-CLIP in SFPQ knockdown in control


title: ChIP-seq from MCF-7 (ENCLB630TJT)

description:
https://www.encodeproject.org/experiments/ENCSR018MQH/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF579 ChIP-seq on human MCF-7
experiment encode accession: ENCSR018MQH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK, ENCSR217LRF
encode release date: 2017-03-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB630TJT
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: immortalized cell line

value: breast cancer (adenocarcinoma)

value: 69 year

value: ENCBS295PFW at ENCODE; https://www.encodeproject.org/ENCBS295PFW/

value: derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from MCF-7 (ENCLB608TWG)

description:
https://www.encodeproject.org/experiments/ENCSR018MQH/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF579 ChIP-seq on human MCF-7
experiment encode accession: ENCSR018MQH
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR882IYK, ENCSR217LRF
encode release date: 2017-03-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB608TWG
size range: 450-650

value: adult

value: ENCBS697UNO at ENCODE; https://www.encodeproject.org/ENCBS697UNO/


title: ChIP-seq from stomach (ENCLB211HTI)

description:
https://www.encodeproject.org/experiments/ENCSR038YKU/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human stomach
experiment encode accession: ENCSR038YKU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR955OCL
encode release date: 2016-07-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB211HTI
size range: 450-650

source_name: Homo sapiens stomach tissue female adult (51 year)

value: stomach

value: tissue

value: 51 year

value: ENCBS314VNR at ENCODE; https://www.encodeproject.org/ENCBS314VNR/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from Peyer's patch (ENCLB934TOZ)

description:
https://www.encodeproject.org/experiments/ENCSR067AZA/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human Peyer's patch
experiment encode accession: ENCSR067AZA
assay title: ChIP-seq
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB934TOZ
size range: 450-650

source_name: Homo sapiens Peyer's patch tissue male adult (37 years)

value: Control

value: Peyer's patch

value: male

value: Michael Snyder, Stanford

value: 37 year

value: ENCBS467IBM at ENCODE; https://www.encodeproject.org/ENCBS467IBM/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from upper lobe of left lung (ENCLB094EOT)

description:
https://www.encodeproject.org/experiments/ENCSR000MMZ/
***************
biological replicate number: 1
technical replicate number: 1
description: Chip-Seq on upper lobe of left lung
experiment encode accession: ENCSR000MMZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398EZJ
encode release date: 2017-06-15
lab: Richard Myers, HAIB
library encode accession: ENCLB094EOT

source_name: Homo sapiens upper lobe of left lung tissue female adult (51 year)

value: upper lobe of left lung

value: female

value: Richard Myers, HAIB

value: ENCBS002CZJ at ENCODE; https://www.encodeproject.org/ENCBS002CZJ/

value: high resolution pathology slide image; https://www.encodeproject.org/documents/f8b74c7e-cf6f-47be-9589-d693effd4258/@@download/attachment/84269.svs


title: ChIP-seq from IMR-90 (ENCLB063BCL)

description:
https://www.encodeproject.org/experiments/ENCSR124AIG/
***************
biological replicate number: 1
technical replicate number: 1
description: FOS ChIP-seq on human IMR-90
experiment encode accession: ENCSR124AIG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR970FKL
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB063BCL
size range: 150-350

source_name: Homo sapiens IMR-90 primary cell female embryo (16 weeks)

value: FOS

value: primary cell

value: Human Fetal Lung Fibroblast cell line

value: unknown

value: 16 week

value: embryonic

value: ENCBS470SXX at ENCODE; https://www.encodeproject.org/ENCBS470SXX/

value: derived from ENCODE donor ENCDO000AAX; https://www.encodeproject.org/ENCDO000AAX/


title: ChIP-seq from SK-N-SH (ENCLB056NEL)

description:
https://www.encodeproject.org/experiments/ENCSR009TKN/
***************
biological replicate number: 2
technical replicate number: 1
description: RCOR1 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR009TKN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000FDA
encode release date: 2017-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB056NEL
size range: 150-350

source_name: Homo sapiens SK-N-SH immortalized cell line

value: SK-N-SH

value: immortalized cell line

value: Neuroblastoma, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.

value: child

value: 4 year

value: Michael Snyder, Stanford

value: ENCBS061YYT at ENCODE; https://www.encodeproject.org/ENCBS061YYT/

value: Derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: ChIP-seq from K562 (ENCLB958BDW)

description:
https://www.encodeproject.org/experiments/ENCSR068GPE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ZNF507 tagged K562 cell line.
experiment encode accession: ENCSR068GPE
assay title: ChIP-seq
encode release date: 2017-02-13
lab: Kevin White, UChicago
library encode accession: ENCLB958BDW

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ZNF507 fusion protein

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ZNF507

value: female

value: Kevin White, UChicago

value: chronic myelogenous leukemia (CML)

value: 53 year

value: adult

value: ENCBS962GKO at ENCODE; https://www.encodeproject.org/ENCBS962GKO/

value: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from upper lobe of left lung (ENCLB135PRK)

description:
https://www.encodeproject.org/experiments/ENCSR068WNI/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human upper lobe of left lung
experiment encode accession: ENCSR068WNI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR492GDK
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB135PRK
size range: 450-650

source_name: Homo sapiens upper lobe of left lung tissue female adult (53 years)

value: upper lobe of left lung

value: tissue

value: ENCBS218BVZ at ENCODE; https://www.encodeproject.org/ENCBS218BVZ/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from HepG2 (ENCLB346QBW)

description:
https://www.encodeproject.org/experiments/ENCSR015TKV/
***************
biological replicate number: 2
technical replicate number: 1
description: BCLAF1 ChIP-seq on human HepG2
experiment encode accession: ENCSR015TKV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR399VVK
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB346QBW
size range: 450-650

source_name: Homo sapiens HepG2 immortalized cell line

value: immortalized cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS837YEZ at ENCODE; https://www.encodeproject.org/ENCBS837YEZ/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from gastrocnemius medialis (ENCLB149WJD)

description:
https://www.encodeproject.org/experiments/ENCSR071XWO/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human gastrocnemius medialis
experiment encode accession: ENCSR071XWO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR915QUT
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB149WJD
size range: 450-650

source_name: Homo sapiens gastrocnemius medialis tissue female adult (51 year)

value: CTCF

value: gastrocnemius medialis

value: female

value: Michael Snyder, Stanford

value: 51 year

value: ENCBS668EWD at ENCODE; https://www.encodeproject.org/ENCBS668EWD/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: ChIP-seq from SK-N-SH (ENCLB147KXE)

description:
https://www.encodeproject.org/experiments/ENCSR009TKN/
***************
biological replicate number: 1
technical replicate number: 1
description: RCOR1 ChIP-seq on human SK-N-SH
experiment encode accession: ENCSR009TKN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR000FDA
encode release date: 2017-06-15
lab: Michael Snyder, Stanford
library encode accession: ENCLB147KXE
size range: 150-350

value: SK-N-SH

value: Metastatic neuroblastoma from bone marrow

value: 4 year

value: ENCBS007RAH at ENCODE; https://www.encodeproject.org/ENCBS007RAH/

value: derived from ENCODE donor ENCDO000ABD; https://www.encodeproject.org/ENCDO000ABD/


title: CLIP_AGO2_LET7_2

value: 2D4 clone from Wako Chemicals

value: P19 cell

value: Ago2 HITS-CLIP in let-7a transfection


title: ChIP-seq from body of pancreas (ENCLB639ULY)

description:
https://www.encodeproject.org/experiments/ENCSR055WBT/
***************
biological replicate number: 1
technical replicate number: 1
description: POLR2A ChIP-seq on human body of pancreas
experiment encode accession: ENCSR055WBT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR462SLN
encode release date: 2016-11-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB639ULY
size range: 450-650

source_name: Homo sapiens body of pancreas tissue male adult (37 years)

value: body of pancreas

value: tissue

value: male

value: 37 year

value: adult

value: ENCBS799DMW at ENCODE; https://www.encodeproject.org/ENCBS799DMW/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from adrenal gland (ENCLB383FSQ)

description:
https://www.encodeproject.org/experiments/ENCSR015WSU/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human adrenal gland
experiment encode accession: ENCSR015WSU
assay title: ChIP-seq
encode release date: 2017-03-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB383FSQ
size range: 450-650

source_name: Homo sapiens adrenal gland tissue female adult (53 years)

value: Control

value: adrenal gland

value: female

value: Michael Snyder, Stanford

value: 53 year

value: ENCBS276BKM at ENCODE; https://www.encodeproject.org/ENCBS276BKM/

value: derived from ENCODE donor ENCDO793LXB; https://www.encodeproject.org/ENCDO793LXB/


title: ChIP-seq from IMR-90 (ENCLB185HFY)

description:
https://www.encodeproject.org/experiments/ENCSR124AIG/
***************
biological replicate number: 2
technical replicate number: 1
description: FOS ChIP-seq on human IMR-90
experiment encode accession: ENCSR124AIG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR970FKL
encode release date: 2016-12-19
lab: Michael Snyder, Stanford
library encode accession: ENCLB185HFY
size range: 150-350

source_name: Homo sapiens IMR-90 primary cell female fetal (16 weeks)

value: FOS

value: primary cell

value: Fetal lung fibroblasts

value: fetal

value: 16 week

value: unknown

value: ENCBS648SCY at ENCODE; https://www.encodeproject.org/ENCBS648SCY/

value: Derived from ENCODE donor ENCDO000AAX; https://www.encodeproject.org/ENCDO000AAX/

value: ENCODE dbxrefs Cellosaurus CVCL_0347; http://web.expasy.org/cellosaurus/CVCL_0347

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-186.aspx


title: ChIP-seq from HepG2 (ENCLB818GYL)

description:
https://www.encodeproject.org/experiments/ENCSR015TKV/
***************
biological replicate number: 1
technical replicate number: 1
description: BCLAF1 ChIP-seq on human HepG2
experiment encode accession: ENCSR015TKV
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR399VVK
encode release date: 2017-05-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB818GYL
size range: 450-650

value: immortalized cell line

value: male

value: hepatocellular carcinoma

value: 15 year

value: child

value: ENCBS435NSE at ENCODE; https://www.encodeproject.org/ENCBS435NSE/

value: derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/


title: ChIP-seq from GM12878 (ENCLB261BJG)

description:
https://www.encodeproject.org/experiments/ENCSR009MBP/
***************
biological replicate number: 2
technical replicate number: 1
description: HSF1 ChIP-seq on human GM12878
experiment encode accession: ENCSR009MBP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR553NUG
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB261BJG
size range: 150-350

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: adult

value: female

value: Michael Snyder, Stanford

value: ENCBS260WJQ at ENCODE; https://www.encodeproject.org/ENCBS260WJQ/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: ChIP-seq from GM12878 (ENCLB555LFM)

description:
https://www.encodeproject.org/experiments/ENCSR009MBP/
***************
biological replicate number: 1
technical replicate number: 1
description: HSF1 ChIP-seq on human GM12878
experiment encode accession: ENCSR009MBP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR553NUG
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB555LFM
size range: 150-350

value: unknown

value: ENCBS276RPG at ENCODE; https://www.encodeproject.org/ENCBS276RPG/


title: ChIP-seq from prostate gland (ENCLB975HVV)

description:
https://www.encodeproject.org/experiments/ENCSR047WFN/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human prostate gland
experiment encode accession: ENCSR047WFN
assay title: ChIP-seq
encode release date: 2016-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB975HVV
size range: 450-650

source_name: Homo sapiens prostate gland tissue male adult (37 years)

value: Control

value: prostate gland

value: tissue

value: 37 year

value: ENCBS631JUH at ENCODE; https://www.encodeproject.org/ENCBS631JUH/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: RIP_AGO2_2

data_processing:
Reads were trimmed with the program cutadapt and reads shorter than 15 nt were discarded
mapping of reads was performed with the webserver "omiRas"
Genome_build: mm10
Supplementary_files_format_and_content: differential smallRNAs were identified with the webtool omiRas and reported in the excel file provided as processed data file.

extract_protocol:
RNA extraction was performed with miRNeasy columns (Qiagen), according to manufacturer's instructions
small RNA libraries were prepared using the NEBNext® Small RNA Library Prep Set for SOLiD™ kit (New England Biolabs), following the manufacturer’s instructions and performing 11 cycles of PCR

value: 2D4 clone from Wako Chemicals


title: ChIP-seq from omental fat pad (ENCLB197XCD)

description:
https://www.encodeproject.org/experiments/ENCSR013JVJ/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human omental fat pad
experiment encode accession: ENCSR013JVJ
assay title: ChIP-seq
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB197XCD
size range: 450-650

source_name: Homo sapiens omental fat pad tissue male adult (54 years)

value: omental fat pad

value: male

value: 54 year

value: ENCBS996THA at ENCODE; https://www.encodeproject.org/ENCBS996THA/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/


title: RIP_AGO2_1

source_name: mouse stem cell


title: RIP_SFPQ_2

value: Ab38148 from Abcam and B92 from Fischer Scientific


title: ChIP-seq from HEK293 (ENCLB004XUE)

description:
https://www.encodeproject.org/experiments/ENCSR044FMM/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-SALL2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR044FMM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB004XUE
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line originated from HEK293 stably expressing N-terminal eGFP-SALL2 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-SALL2 under the control of a CMV promoter.

value: female

value: Michael Snyder, Stanford

value: embryonic

value: ENCBS209PBO at ENCODE; https://www.encodeproject.org/ENCBS209PBO/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: RIP_SFPQ_1


title: RIP_SFPQ_3


title: ChIP-seq from adrenal gland (ENCLB590HIH)

description:
https://www.encodeproject.org/experiments/ENCSR014GSQ/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human adrenal gland
experiment encode accession: ENCSR014GSQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR867NUH
encode release date: 2016-12-13
lab: Michael Snyder, Stanford
library encode accession: ENCLB590HIH
size range: 450-650

source_name: Homo sapiens adrenal gland tissue female adult (51 year)

value: CTCF

value: adrenal gland

value: tissue

value: 51 year

value: adult

value: ENCBS055JKA at ENCODE; https://www.encodeproject.org/ENCBS055JKA/

value: derived from ENCODE donor ENCDO271OUW; https://www.encodeproject.org/ENCDO271OUW/


title: RIP_Input_3


title: ChIP-seq from upper lobe of left lung (ENCLB317XDG)

description:
https://www.encodeproject.org/experiments/ENCSR061CNP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human upper lobe of left lung
experiment encode accession: ENCSR061CNP
assay title: ChIP-seq
encode release date: 2016-12-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB317XDG
size range: 450-650

value: Control

value: upper lobe of left lung

value: ENCBS011GFV at ENCODE; https://www.encodeproject.org/ENCBS011GFV/


title: ChIP-seq from upper lobe of left lung (ENCLB121WFX)

description:
https://www.encodeproject.org/experiments/ENCSR062MVC/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human upper lobe of left lung
experiment encode accession: ENCSR062MVC
assay title: ChIP-seq
encode release date: 2016-12-08
lab: Michael Snyder, Stanford
library encode accession: ENCLB121WFX
size range: 450-650

source_name: Homo sapiens upper lobe of left lung tissue male adult (37 years)

value: male

value: 37 year

value: ENCBS089HGD at ENCODE; https://www.encodeproject.org/ENCBS089HGD/

value: derived from ENCODE donor ENCDO845WKR; https://www.encodeproject.org/ENCDO845WKR/


title: ChIP-seq from transverse colon (ENCLB620SYW)

description:
https://www.encodeproject.org/experiments/ENCSR009MWG/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human transverse colon
experiment encode accession: ENCSR009MWG
assay title: ChIP-seq
encode release date: 2016-05-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB620SYW
size range: 450-650

source_name: Homo sapiens transverse colon tissue male adult (37 years)

value: transverse colon

value: Michael Snyder, Stanford

value: ENCBS572ESP at ENCODE; https://www.encodeproject.org/ENCBS572ESP/


title: RIP_Input_2


title: ChIP-seq from HEK293 (ENCLB243VTX)

description:
https://www.encodeproject.org/experiments/ENCSR044FMM/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-SALL2 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR044FMM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR157LMX, ENCSR274OGE, ENCSR342AGU, ENCSR354FNX, ENCSR429LAP, ENCSR688NWK
encode release date: 2017-04-06
lab: Michael Snyder, Stanford
library encode accession: ENCLB243VTX
size range: 450-650

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-SALL2 under the control of a CMV promoter.

value: female

value: unknown

value: embryonic

value: ENCBS543JCR at ENCODE; https://www.encodeproject.org/ENCBS543JCR/

value: derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from omental fat pad (ENCLB642LXJ)

description:
https://www.encodeproject.org/experiments/ENCSR005LPI/
***************
biological replicate number: 1
technical replicate number: 1
description: CTCF ChIP-seq on human omental fat pad
experiment encode accession: ENCSR005LPI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR013JVJ
encode release date: 2017-01-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB642LXJ
size range: 450-650

value: CTCF

value: omental fat pad

value: tissue

value: 54 year

value: adult

value: ENCBS996THA at ENCODE; https://www.encodeproject.org/ENCBS996THA/

value: derived from ENCODE donor ENCDO451RUA; https://www.encodeproject.org/ENCDO451RUA/