title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 88

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_88
esc1_48h_88_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 87

status: Public on Dec 07 2016

type: SRA

city: University Park

first: Shaun

last: Mahony

state: PA

address: 404 South Frear Bldg

department: Biochemistry & Molecular Biology

country: USA

institute: Penn State University

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_87
esc1_48h_87_rsem

library_source: transcriptomic

data_processing:
Basecall conversion to fastq files was performed using bcl2fastq for HiSeq runs and Picard fpr NextSeq runs.
We quantified gene expression (transcripts per million) in each library as previously described (Shalek et al., 2013). We filtered out low quality cells where we detected less than 2,000 unique genes, which typically had poor transcriptomics alignment rates (<30%, as compared to 65% for successful cells). We first ran a principal component analysis (PCA), as previously described (Shalek et al., 2013) using all detected genes, and saw that the first component perfectly separated the two experimental batches. We therefore subtracted the first PC from the data in order to remove this batch effect.
Single cell RNA-seq: Data pre-processing and filtration: We quantified gene expression (transcripts per million) in each library as previously described (Shalek et al., 2013). We filtered out low quality cells where we detected less than 2,000 unique genes, which typically had poor transcriptomics alignment rates (<30%, as compared to 65% for successful cells). We first ran a principal component analysis (PCA), as previously described (Shalek et al., 2013) using all detected genes, and saw that the first component perfectly separated the two experimental batches. We therefore subtracted the first PC from the data in order to remove this batch effect.
Calculating developmental trajectories and ‘pseudotime’: As trajectory analysis is sensitive to gene input list, we first sought to identify a set of genes whose expression changes with biological time (the timepoint during the differentiation series when the cells were collected). We used a strategy similar to (Trapnell et al., 2014), constructing a linear model for each gene as a function of its biological time. We identified 458 genes where the linear model explained a significant (p<1e-5 after Bonferroni correction) of the variance in gene expression. We next used these 458 genes as input to a diffusion map, a non-linear dimensional reduction technique that has been shown to be well-suited to reconstructing developmental trajectories for single cell data. We assigned each cell a ‘pseudotime’ value, reflecting its progression through the differentiation process, by projecting a principal curve through the first two diffusion map dimensions.
Genome_build: mm10
Supplementary_files_format_and_content: gene expression table summarizing processed per-gene read counts across all submitted experiments

molecule: total RNA

organism: Mus musculus

growth_protocol: Generation of inducible lines: NIL (Ngn2-Isl1-Lhx3)-V5 and Flag-Ngn2 inducible ESC lines were generated as previously described (Mazzoni et al. 2013, Mazzoni et al. 2011). To generate IL (Isl1-Lhx3)-V5 inducible ESC lines, Isl1-Lhx3 open reading frames were amplified from p2Lox-NIL-V5 and inserted into the p2Lox-V5 plasmid (Iacovino M. et al., 2011). Phusion polymerase (New England Biolabs) was used to minimize the introduction of mutations during PCR amplification. Inducible cell lines were generated by treating the recipient ESCs for 16 h with 1 µg/ml Dox to induce Cre followed by electroporation of p2Lox-IL-V5 plasmid. After G418 selection (250ng/ml, Cellgro), four resistant clones were picked, characterized and expanded.   Cell culture and differentiation: All the inducible ESC lines were grown in 2-inhibitors medium (Advanced DMEM/F12:Neurobasal (1:1) Medium (Gibco), supplemented with 2.5% ESC-grade fetal bovine serum (vol/vol, Corning), N2 (Gibco), B27 (Gibco), 2mM L-glutamine (Gibco), 0.1 mM β-mercaptoethanol (Gibco), 1000 U/ml leukemia inhibitory factor (Millipore), 3µM CHIR (BioVision) and 1 µM PD0325901 (Sigma). For ChIP experiments, 3 x 10^6 cells were plated in each square dish (245mm x 245mm).

extract_protocol:
Cells were collected at different time points after NIL induction. Differentiating embryoid bodies were washed with phosphate-buffered saline and then dissociated by mild trypsinization followed by mechanical dissociation into single cell suspension. Viable cells were labeled by incubating with 1 µM Fluorescein diacetate (Sigma) at 37°C for 10 minutes. Single cells were FACS-sorted into 96-well plates containing 10 µl of 1% beta-mercaptoethanol in TCL buffer (Qiagen). Once sorting was completed, plates were sealed, centrifuged 1 min at 800 g at RT and immediately frozen on dry ice. Plates were kept at -80°C until lysate cleanup and reverse transcription of mRNA.
Single cell libraries were prepared in two overall batches using a custom version of the SMART-Seq2 protocol (Picelli et al., 2013), as previously described (Satija et al., 2015), without the use of Random Molecular Tags. Cells were sequenced with 50bp single end reads on a HiSeq 2500 at an average sequencing depth of 325,000 reads per cell.

treatment_protocol: To obtain Embryoid bodies (EBs) ESC were trypsinized (Gibco) and seeded in AK medium (Advanced DMEM/F12:Neurobasal (1:1) Medium, 10% Knockout SR (vol/vol) (Gibco), Pen/Strep (Gibco), 2mM L-glutamine and 0.1 mM 2-mercaptoethanol) (day -2).  After 2 days, EBs were passed 1:2 and the inducible cassette was induced by adding 3 µg/ml of Doxycycline (Sigma) to the culture medium (EBs 0h).

tag: strain

tag: treatment

tag: cell type

value: ES-derived embryoid bodies with induced transcription factors


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 86

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_86
esc1_48h_86_rsem


title: Input-DNA  in EB+24hrDox(iIsl1.Lhx3.V5.Ebf2.Onecut2) replicate 1

library_source: genomic

data_processing:
Basecall conversion to fastq files was performed using bcl2fastq for HiSeq runs and Picard fpr NextSeq runs.
Alignment: All transcription factor ChIP-Seq fastq files were aligned to mouse genome (version mm10) using Bowtie (1.0.1) (Langmead et al., 2009) with options “-q --best --strata -m 1 --chunkmbs 1024”.  Only uniquely mapped reads were considered for further analysis.
Binding event detection: Isl1 and Lhx3 binding sites were profiled using MultiGPS (Mahony et al., 2014), which enables the identification of differentially-enriched TF binding sites across multiple conditions. Our initial analysis showed that Isl1 and Lhx3 mostly bind to the same sets of regions genome-wide with similar ChIP enrichment. Hence we treated Isl1 and Lhx3 datasets at each time-point as different conditions in a single MultiGPS run. The discovered binding events were required to have a significant ChIP enrichment over input samples (q-value < 0.001) as assessed using binomial tests. Binding sites for Ngn2, Onecut2, and Ebf2 were identified using MultiGPS (Mahony et al., 2014) with different runs for each transcription factor. Binding events were required to have a significant ChIP enrichment over the input samples based on a binomial test (q-value < 0.001).
Genome_build: mm10
Supplementary_files_format_and_content: MultiGPS: MultiGPS output files
Supplementary_files_format_and_content: BED: Conversion of MultiGPS output files to BED format, centered on the MultiGPS binding event location
Supplementary_files_format_and_content: BIGWIG: WIG files were generated using custom software to summarize read counts overlapping genomic regions. All reads were artificially extended out to 200bp in length. A bin size of 10bp was used for calculating overlapping read counts. WIG files were converted to bigWig using wigToBigWig (UCSC)

molecule: genomic DNA

source_name: ES-derived embryoid bodies with induced transcription factors

growth_protocol: The inducible ESC lines were generated using the inducible cassette exchange (ICE) system (Iacovino et al., 2011). NIL (Ngn2-Isl1-Lhx3) inducible ESC line was previously generated (Mazzoni et al., 2013) (Mazzoni et al., 2011). To generate the p2lox-IL plasmid, Isl1-Lhx3 open reading frames were amplified from p2Lox-NIL and inserted into the p2Lox-V5 plasmid (Mazzoni et al., 2011). The p2lox-IL-EO and p2lox-NIL-EO plasmids were obtained by cloning Ebf2 and Onecut2 open reading frames under control of a second inducible tetracycline response element (TRE), into the p2lox-IL or p2lox-NIL plasmid, respectively. 2A peptides were used to separate Ngn2-Isl1-Lhx3, Isl1-Lhx3 and Ebf2-Onecut2 in the NIL, IL and NIL/IL-EO inducible lines, respectively. The p2lox-N plasmid was obtained by cloning the Ngn2 open reading frame into a p2lox-Flag plasmid (Mazzoni et al., 2011). Phusion polymerase (New England Biolabs) was used to minimize the introduction of mutations during PCR amplification. The inducible cell lines (iIL, iIL-EO, iNIL-EO and iN) were generated by treating the recipient ESCs for 16 h with 1 µg/ml Dox to induce Cre followed by electroporation of the respective plasmids (p2lox-IL, p2lox-IL-EO, p2lox-NIL-EO  and p2lox-N). After G418 selection (250ng/ml, Cellgro), cell lines were characterized by performing antibody staining (Hb9, Isl1/2, Chat, Vacht, Tubb3) and expanded. All the inducible ESC lines were grown in 2-inhibitors medium (Advanced DMEM/F12:Neurobasal (1:1) Medium (Gibco), supplemented with 2.5% ESC-grade fetal bovine serum (vol/vol, Corning), N2 (Gibco), B27 (Gibco), 2mM L-glutamine (Gibco), 0.1 mM β-mercaptoethanol (Gibco), 1000 U/ml leukemia inhibitory factor (Millipore), 3µM CHIR (BioVision) and 1 µM PD0325901 (Sigma). For ChIP experiments 3 x 10^6 cells were plated in each square dish (245mm x 245mm).

extract_protocol:
Cells were collected at different time points after NIL induction and fixed with 1 mM DSG (ProteoChem) followed by 1% formaldehyde (vol/vol) for 15 min at 20–25°C. Pellets containing ~25 × 10^6 cells were stored at −80 °C. Cells were thawed on ice, resuspended in 5 ml of Lysis Buffer  A (50 mM Hepes-KOH pH 7.5, 140 mM NaCl, 1 mM EDTA, 10% glycerol (vol/vol), 0.5% Igepal (vol/vol), 0.25% Triton X-100 (vol/vol)) and incubated for 10 min at 4°C in a rotating platform. Samples were spun down for 5 min at 1,350 g, resuspended in 5 ml Lysis Buffer B (10 mM Tris-HCl pH 8.0, 200 mM NaCl, 1 mM EDTA pH 8.0, 0.5 mM EGTA pH 8.0) and incubated for 10 min at 4 °C in a rotating platform. Samples were spun down for 5 min at 1,350 g, resuspended in 3 ml of Sonication Buffer (50 mM Hepes pH 7.5, 140 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% Trition X-100, 0.1% sodium deoxycholate (wt/vol), 0.1% SDS (wt/vol)). Nuclear extracts were sonicated on ice using a Branson 450 Sonifier (20% power amplitude; 18 cycles x 30 seconds pulses with 1 minute interval between each pulse) to sheer cross-linked DNA to an average fragment size of approximately 500 bp. Sonicated chromatin was incubated for 16 h at 4 °C with Dynabeads protein-G (Life Techologies) conjugated with either rabbit polyclonal antibody to V5 (ab15828, Abcam) to immunoprecipitate Lhx3 or a  combination of monoclonal antibodies (40.3A4, 39.3F7 and 40.206, DSHB) for Isl1. Ngn2 was immunoprecipitated by using a goat polyclonal antobody (sc-19233, Santa Cruz), whereas to immunoprecipitate Ebf2 and Onecut2, a rabbit polyclonal antibody (ab156999, Abcam) and a sheep polyclonal antibody (AF294, R&D Systems) were used, respectively. For histone modifications the following rabbit polyclonal antibodies were used: ab8895 (Abcam) for H3K4me1, ab7766 (Abcam) for H3K4me2, 39159 (Active Motif) for H3K4me3, ab4729 (Abcam) for H3K27ac and 39155 (Active Motif) for H3K27me3. After incubation, and with the aid of a magnetic device, beads were washed once with Sonication Buffer, than with Sonication buffer and 500 nM NaCl and once with LiCl Wash Buffer (20 mM Tris-HCl (pH 8.0), 1 mM EDTA, 250 mM LiCl, 0.5% NP-40, 0.5% sodium deoxycholate) and 1 ml of TE (10 mM Tris, 1 mM EDTA, pH 8). Then, beads were centrifuged at 950 g for 3 min and the residual TE removed with a pipette. 210 µl of Elution Buffer (50 mM Tris-HCl (pH 8.0), 10 mM EDTA (pH 8.0), 1% SDS) was added to the beads followed by incubation at 65°C for 45 min with a brief pulse of vortex every 10 min. 200 µl of supernatant was removed after a 1 min centrifugation at 16,000 g. The crosslink was reversed by 16 h incubation at 65°C. RNA was digested by the addition of 200 µl of TE and RNAse A (Sigma) at a final concentration of 0.2 mg/ml and incubated for 2 h at 37°C. Protein was digested by the addition of Proteinase K (Invitrogen) at a final concentration of 0.2 mg/ml, supplemented with CaCl2 followed by a 30-min incubation at 55°C. DNA was extracted with phenol:chloroform:isoamyl alcohol (25:24:1; vol/vol) (Invitrogen) and then recovered with an ethanol precipitation with glycogens as carrier. The pellets were suspended in 70 µl of water.
One third (24ul) of ChIP DNA was used to prepare llumina DNA sequencing libraries. Briefly, after end repair and A-tailing, Illumina-compatible Bioo Scientific multiplexed adapters were ligated and the unligated adapters removed through purification using Agencourt AmpureXP beads (Beckman Coulter). Adapter-ligated DNA was amplified by PCR using TruSeq Fw primer (AATGATACGGCGACCACCGAGATCTACAC) and TruSeq Rev primer (CAAGCAGAAGACGGCATACGAGAT), both from Sigma. DNA libraries between 300 and 500 bp in size were gel purified. KAPA SYBR FAST Roche LightCycler 480 2X qPCR Master Mix (Kapa Biosystems) was used in 20 μl reactions that were analyzed in a Roche LightCycler. Fifty base pair single-end sequencing was performed using Illumina HiSeq-2500 at the NYU Genome Core facility.

tag: chip target

value: Input

tag: chip antibody

value: Embryoid Bodies


title: ChIP-seq Lhx3.V5 in EB+24hrDox(iNgn2.Isl1.Lhx3.V5.Ebf2.Onecut2) replicate 2

description:
Lhx3_24h_iNILEO.bed
Lhx3_24h_iNILEO.events.txt

value: anti-V5 (Abcam ab15828)


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 84

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_84
esc1_48h_84_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 83

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_83
esc1_48h_83_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 78

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_78
esc1_48h_78_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 77

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_77
esc1_48h_77_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 79

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_79
esc1_48h_79_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 81

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_81
esc1_48h_81_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 76

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_76
esc1_48h_76_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 93

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_93
esc1_48h_93_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 75

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_75
esc1_48h_75_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 74

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_74
esc1_48h_74_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 71

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_71
esc1_48h_71_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 85

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_85
esc1_48h_85_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 72

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_72
esc1_48h_72_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 70

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_70
esc1_48h_70_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 73

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_73
esc1_48h_73_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 68

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_68
esc1_48h_68_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 67

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_67
esc1_48h_67_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 80

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_80
esc1_48h_80_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 65

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_65
esc1_48h_65_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 62

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_62
esc1_48h_62_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 61

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_61
esc1_48h_61_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 63

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_63
esc1_48h_63_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 60

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_60
esc1_48h_60_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 58

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_58
esc1_48h_58_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 53

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_53
esc1_48h_53_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 55

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_55
esc1_48h_55_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 57

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_57
esc1_48h_57_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 52

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_52
esc1_48h_52_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 54

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_54
esc1_48h_54_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 56

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_56
esc1_48h_56_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 59

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_59
esc1_48h_59_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 69

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_69
esc1_48h_69_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 51

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_51
esc1_48h_51_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 49

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_49
esc1_48h_49_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 50

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_50
esc1_48h_50_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 48

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_48
esc1_48h_48_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 46

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_46
esc1_48h_46_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 45

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_45
esc1_48h_45_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 47

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_47
esc1_48h_47_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 64

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_64
esc1_48h_64_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 44

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_44
esc1_48h_44_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 66

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_66
esc1_48h_66_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 43

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_43
esc1_48h_43_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 42

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_42
esc1_48h_42_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 41

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_41
esc1_48h_41_rsem


title: ChIP-seq Lhx3.V5 in EB+24hrDox(iIsl1.Lhx3.V5.Ebf2.Onecut2) replicate 1

description:
Lhx3_24h_iILEO.bed
Lhx3_24h_iILEO.events.txt


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 40

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_40
esc1_48h_40_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 39

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_39
esc1_48h_39_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 37

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_37
esc1_48h_37_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 36

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_36
esc1_48h_36_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 32

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_32
esc1_48h_32_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 34

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_34
esc1_48h_34_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 33

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_33
esc1_48h_33_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 31

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_31
esc1_48h_31_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 30

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_30
esc1_48h_30_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 29

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_29
esc1_48h_29_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 35

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_35
esc1_48h_35_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 28

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_28
esc1_48h_28_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 27

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_27
esc1_48h_27_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 26

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_26
esc1_48h_26_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 25

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_25
esc1_48h_25_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 24

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_24
esc1_48h_24_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 23

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_23
esc1_48h_23_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 22

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_22
esc1_48h_22_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 21

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_21
esc1_48h_21_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 20

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_20
esc1_48h_20_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 17

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_17
esc1_48h_17_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 19

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_19
esc1_48h_19_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 16

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_16
esc1_48h_16_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 15

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_15
esc1_48h_15_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 38

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_38
esc1_48h_38_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 14

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_14
esc1_48h_14_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 13

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_13
esc1_48h_13_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 12

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_12
esc1_48h_12_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 11

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_11
esc1_48h_11_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 9

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_9
esc1_48h_9_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 6

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_6
esc1_48h_6_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 8

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_8
esc1_48h_8_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 7

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_7
esc1_48h_7_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 5

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_5
esc1_48h_5_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 4

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_4
esc1_48h_4_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 3

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_3
esc1_48h_3_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 18

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_18
esc1_48h_18_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 2

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_2
esc1_48h_2_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 96

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_96
esc1_36h_96_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 95

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_95
esc1_36h_95_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 94

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_94
esc1_36h_94_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 93

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_93
esc1_36h_93_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 88

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_88
esc1_36h_88_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 89

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_89
esc1_36h_89_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 90

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_90
esc1_36h_90_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 10

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_10
esc1_48h_10_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 91

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_91
esc1_36h_91_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 86

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_86
esc1_36h_86_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 87

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_87
esc1_36h_87_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 82

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_82
esc1_36h_82_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 81

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_81
esc1_36h_81_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 83

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_83
esc1_36h_83_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 84

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_84
esc1_36h_84_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 80

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_80
esc1_36h_80_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 78

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_78
esc1_36h_78_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 1

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_1
esc1_48h_1_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 76

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_76
esc1_36h_76_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 77

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_77
esc1_36h_77_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 79

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_79
esc1_36h_79_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 92

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_92
esc1_36h_92_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 74

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_74
esc1_36h_74_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 75

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_75
esc1_36h_75_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 73

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_73
esc1_36h_73_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 72

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_72
esc1_36h_72_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 85

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_85
esc1_36h_85_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 69

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_69
esc1_36h_69_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 67

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_67
esc1_36h_67_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 66

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_66
esc1_36h_66_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 65

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_65
esc1_36h_65_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 61

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_61
esc1_36h_61_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 62

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_62
esc1_36h_62_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 63

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_63
esc1_36h_63_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 58

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_58
esc1_36h_58_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 57

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_57
esc1_36h_57_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 56

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_56
esc1_36h_56_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 60

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_60
esc1_36h_60_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 64

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_64
esc1_36h_64_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 55

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_55
esc1_36h_55_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 53

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_53
esc1_36h_53_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 52

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_52
esc1_36h_52_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 71

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_71
esc1_36h_71_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 51

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_51
esc1_36h_51_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 50

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_50
esc1_36h_50_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 49

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_49
esc1_36h_49_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 54

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_54
esc1_36h_54_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 68

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_68
esc1_36h_68_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 48

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_48
esc1_36h_48_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 45

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_45
esc1_36h_45_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 43

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_43
esc1_36h_43_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 44

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_44
esc1_36h_44_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 41

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_41
esc1_36h_41_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 59

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_59
esc1_36h_59_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 40

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_40
esc1_36h_40_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 37

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_37
esc1_36h_37_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 35

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_35
esc1_36h_35_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 38

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_38
esc1_36h_38_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 39

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_39
esc1_36h_39_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 36

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_36
esc1_36h_36_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 32

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_32
esc1_36h_32_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 33

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_33
esc1_36h_33_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 34

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_34
esc1_36h_34_rsem


title: Single-cell RNA-seq in EB+48hrDox(iNgn2.Isl1.Lhx3.V5) cell 82

description:
EB+48hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_82
esc1_48h_82_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 31

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_31
esc1_36h_31_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 30

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_30
esc1_36h_30_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 28

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_28
esc1_36h_28_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 47

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_47
esc1_36h_47_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 29

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_29
esc1_36h_29_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 46

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_46
esc1_36h_46_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 27

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_27
esc1_36h_27_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 26

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_26
esc1_36h_26_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 23

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_23
esc1_36h_23_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 22

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_22
esc1_36h_22_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 70

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_70
esc1_36h_70_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 25

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_25
esc1_36h_25_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 24

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_24
esc1_36h_24_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 21

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_21
esc1_36h_21_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 20

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_20
esc1_36h_20_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 19

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_19
esc1_36h_19_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 17

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_17
esc1_36h_17_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 16

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_16
esc1_36h_16_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 15

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_15
esc1_36h_15_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 42

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_42
esc1_36h_42_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 12

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_12
esc1_36h_12_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 11

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_11
esc1_36h_11_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 8

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_8
esc1_36h_8_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 9

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_9
esc1_36h_9_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 10

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_10
esc1_36h_10_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 14

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_14
esc1_36h_14_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 7

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_7
esc1_36h_7_rsem


title: DNase-seq from MN1 (ENCLB685MCP)

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR898KAX/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR898KAX
assay title: DNase-seq
assembly: mm10
encode release date: 2016-07-15
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB685MCP

data_processing: See GSM*_README.txt supplementary file linked below

source_name: Mus musculus strain B6NCrl MN1 immortalized cell line treated with 10 nM methyltrienolone

tag: line

value: immortalized cell line

tag: biosample encode accession

tag: dev stage

value: unknown

tag: treatments

tag: Sex

value: not collected

tag: age

tag: lab

value: John Stamatoyannopoulos, UW

tag: link

value: ENCBS258GWZ at ENCODE; https://www.encodeproject.org/ENCBS258GWZ/

value: Derived from ENCODE donor ENCDO956IXV; https://www.encodeproject.org/ENCDO956IXV/

value: ENCODE dbxrefs Cellosaurus CVCL_U508; http://web.expasy.org/cellosaurus/CVCL_U508


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 4

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_4
esc1_36h_4_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 5

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_5
esc1_36h_5_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 3

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_3
esc1_36h_3_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 2

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_2
esc1_36h_2_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 13

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_13
esc1_36h_13_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 1

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_1
esc1_36h_1_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 6

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_6
esc1_36h_6_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 95

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_95
esc1_30h_95_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 94

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_94
esc1_30h_94_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 93

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_93
esc1_30h_93_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 88

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_88
esc1_30h_88_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 91

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_91
esc1_30h_91_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 92

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_92
esc1_30h_92_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 86

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_86
esc1_30h_86_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 87

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_87
esc1_30h_87_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 85

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_85
esc1_30h_85_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 84

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_84
esc1_30h_84_rsem


title: Single-cell RNA-seq in EB+36hrDox(iNgn2.Isl1.Lhx3.V5) cell 18

description:
EB+36hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_18
esc1_36h_18_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 89

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_89
esc1_30h_89_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 80

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_80
esc1_30h_80_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 79

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_79
esc1_30h_79_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 78

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_78
esc1_30h_78_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 83

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_83
esc1_30h_83_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 77

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_77
esc1_30h_77_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 81

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_81
esc1_30h_81_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 73

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_73
esc1_30h_73_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 76

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_76
esc1_30h_76_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 96

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_96
esc1_30h_96_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 72

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_72
esc1_30h_72_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 71

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_71
esc1_30h_71_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 75

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_75
esc1_30h_75_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 90

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_90
esc1_30h_90_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 68

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_68
esc1_30h_68_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 69

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_69
esc1_30h_69_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 70

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_70
esc1_30h_70_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 82

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_82
esc1_30h_82_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 67

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_67
esc1_30h_67_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 66

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_66
esc1_30h_66_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 63

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_63
esc1_30h_63_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 65

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_65
esc1_30h_65_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 64

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_64
esc1_30h_64_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 60

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_60
esc1_30h_60_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 58

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_58
esc1_30h_58_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 59

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_59
esc1_30h_59_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 61

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_61
esc1_30h_61_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 57

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_57
esc1_30h_57_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 62

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_62
esc1_30h_62_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 56

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_56
esc1_30h_56_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 55

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_55
esc1_30h_55_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 54

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_54
esc1_30h_54_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 52

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_52
esc1_30h_52_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 51

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_51
esc1_30h_51_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 49

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_49
esc1_30h_49_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 48

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_48
esc1_30h_48_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 44

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_44
esc1_30h_44_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 43

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_43
esc1_30h_43_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 47

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_47
esc1_30h_47_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 46

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_46
esc1_30h_46_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 74

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_74
esc1_30h_74_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 41

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_41
esc1_30h_41_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 40

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_40
esc1_30h_40_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 39

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_39
esc1_30h_39_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 37

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_37
esc1_30h_37_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 36

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_36
esc1_30h_36_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 53

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_53
esc1_30h_53_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 35

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_35
esc1_30h_35_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 34

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_34
esc1_30h_34_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 33

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_33
esc1_30h_33_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 32

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_32
esc1_30h_32_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 28

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_28
esc1_30h_28_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 30

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_30
esc1_30h_30_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 31

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_31
esc1_30h_31_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 24

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_24
esc1_30h_24_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 29

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_29
esc1_30h_29_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 22

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_22
esc1_30h_22_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 42

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_42
esc1_30h_42_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 26

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_26
esc1_30h_26_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 50

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_50
esc1_30h_50_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 45

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_45
esc1_30h_45_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 27

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_27
esc1_30h_27_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 17

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_17
esc1_30h_17_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 16

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_16
esc1_30h_16_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 18

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_18
esc1_30h_18_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 25

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_25
esc1_30h_25_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 38

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_38
esc1_30h_38_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 23

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_23
esc1_30h_23_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 21

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_21
esc1_30h_21_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 11

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_11
esc1_30h_11_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 20

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_20
esc1_30h_20_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 19

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_19
esc1_30h_19_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 13

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_13
esc1_30h_13_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 15

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_15
esc1_30h_15_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 10

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_10
esc1_30h_10_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 12

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_12
esc1_30h_12_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 6

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_6
esc1_30h_6_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 8

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_8
esc1_30h_8_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 4

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_4
esc1_30h_4_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 1

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_1
esc1_30h_1_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 96

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_96
esc1_24h_96_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 2

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_2
esc1_30h_2_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 94

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_94
esc1_24h_94_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 93

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_93
esc1_24h_93_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 92

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_92
esc1_24h_92_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 90

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_90
esc1_24h_90_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 91

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_91
esc1_24h_91_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 14

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_14
esc1_30h_14_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 89

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_89
esc1_24h_89_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 88

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_88
esc1_24h_88_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 7

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_7
esc1_30h_7_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 5

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_5
esc1_30h_5_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 80

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_80
esc1_24h_80_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 3

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_3
esc1_30h_3_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 87

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_87
esc1_24h_87_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 86

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_86
esc1_24h_86_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 85

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_85
esc1_24h_85_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 82

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_82
esc1_24h_82_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 95

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_95
esc1_24h_95_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 83

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_83
esc1_24h_83_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 81

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_81
esc1_24h_81_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 78

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_78
esc1_24h_78_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 79

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_79
esc1_24h_79_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 77

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_77
esc1_24h_77_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 76

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_76
esc1_24h_76_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 73

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_73
esc1_24h_73_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 72

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_72
esc1_24h_72_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 69

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_69
esc1_24h_69_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 70

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_70
esc1_24h_70_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 71

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_71
esc1_24h_71_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 74

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_74
esc1_24h_74_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 84

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_84
esc1_24h_84_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 68

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_68
esc1_24h_68_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 64

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_64
esc1_24h_64_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 62

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_62
esc1_24h_62_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 67

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_67
esc1_24h_67_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 66

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_66
esc1_24h_66_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 63

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_63
esc1_24h_63_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 65

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_65
esc1_24h_65_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 61

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_61
esc1_24h_61_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 60

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_60
esc1_24h_60_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 57

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_57
esc1_24h_57_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 75

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_75
esc1_24h_75_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 58

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_58
esc1_24h_58_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 55

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_55
esc1_24h_55_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 54

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_54
esc1_24h_54_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 53

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_53
esc1_24h_53_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 52

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_52
esc1_24h_52_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 47

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_47
esc1_24h_47_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 48

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_48
esc1_24h_48_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 49

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_49
esc1_24h_49_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 51

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_51
esc1_24h_51_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 46

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_46
esc1_24h_46_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 50

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_50
esc1_24h_50_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 45

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_45
esc1_24h_45_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 43

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_43
esc1_24h_43_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 42

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_42
esc1_24h_42_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 44

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_44
esc1_24h_44_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 56

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_56
esc1_24h_56_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 59

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_59
esc1_24h_59_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 40

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_40
esc1_24h_40_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 41

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_41
esc1_24h_41_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 39

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_39
esc1_24h_39_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 36

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_36
esc1_24h_36_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 35

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_35
esc1_24h_35_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 33

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_33
esc1_24h_33_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 32

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_32
esc1_24h_32_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 37

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_37
esc1_24h_37_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 31

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_31
esc1_24h_31_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 34

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_34
esc1_24h_34_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 38

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_38
esc1_24h_38_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 30

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_30
esc1_24h_30_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 25

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_25
esc1_24h_25_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 28

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_28
esc1_24h_28_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 23

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_23
esc1_24h_23_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 26

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_26
esc1_24h_26_rsem


title: Single-cell RNA-seq in EB+30hrDox(iNgn2.Isl1.Lhx3.V5) cell 9

description:
EB+30hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_9
esc1_30h_9_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 22

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_22
esc1_24h_22_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 21

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_21
esc1_24h_21_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 27

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_27
esc1_24h_27_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 20

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_20
esc1_24h_20_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 18

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_18
esc1_24h_18_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 19

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_19
esc1_24h_19_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 17

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_17
esc1_24h_17_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 16

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_16
esc1_24h_16_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 11

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_11
esc1_24h_11_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 12

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_12
esc1_24h_12_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 10

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_10
esc1_24h_10_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 9

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_9
esc1_24h_9_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 14

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_14
esc1_24h_14_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 7

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_7
esc1_24h_7_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 29

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_29
esc1_24h_29_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 8

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_8
esc1_24h_8_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 6

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_6
esc1_24h_6_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 24

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_24
esc1_24h_24_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 4

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_4
esc1_24h_4_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 5

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_5
esc1_24h_5_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 2

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_2
esc1_24h_2_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 1

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_1
esc1_24h_1_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 3

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_3
esc1_24h_3_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 96

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_96
esc1_18h_96_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 93

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_93
esc1_18h_93_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 95

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_95
esc1_18h_95_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 92

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_92
esc1_18h_92_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 91

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_91
esc1_18h_91_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 89

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_89
esc1_18h_89_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 90

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_90
esc1_18h_90_rsem


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 15

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_15
esc1_24h_15_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 87

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_87
esc1_18h_87_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 86

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_86
esc1_18h_86_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 84

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_84
esc1_18h_84_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 85

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_85
esc1_18h_85_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 83

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_83
esc1_18h_83_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 82

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_82
esc1_18h_82_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 75

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_75
esc1_18h_75_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 81

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_81
esc1_18h_81_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 76

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_76
esc1_18h_76_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 77

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_77
esc1_18h_77_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 79

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_79
esc1_18h_79_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 74

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_74
esc1_18h_74_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 94

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_94
esc1_18h_94_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 73

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_73
esc1_18h_73_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 88

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_88
esc1_18h_88_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 72

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_72
esc1_18h_72_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 71

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_71
esc1_18h_71_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 69

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_69
esc1_18h_69_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 70

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_70
esc1_18h_70_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 68

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_68
esc1_18h_68_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 64

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_64
esc1_18h_64_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 65

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_65
esc1_18h_65_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 63

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_63
esc1_18h_63_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 61

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_61
esc1_18h_61_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 62

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_62
esc1_18h_62_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 80

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_80
esc1_18h_80_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 60

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_60
esc1_18h_60_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 78

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_78
esc1_18h_78_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 58

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_58
esc1_18h_58_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 56

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_56
esc1_18h_56_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 55

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_55
esc1_18h_55_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 59

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_59
esc1_18h_59_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 57

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_57
esc1_18h_57_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 54

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_54
esc1_18h_54_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 52

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_52
esc1_18h_52_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 51

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_51
esc1_18h_51_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 50

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_50
esc1_18h_50_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 53

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_53
esc1_18h_53_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 49

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_49
esc1_18h_49_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 48

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_48
esc1_18h_48_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 67

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_67
esc1_18h_67_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 45

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_45
esc1_18h_45_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 39

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_39
esc1_18h_39_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 66

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_66
esc1_18h_66_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 38

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_38
esc1_18h_38_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 46

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_46
esc1_18h_46_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 41

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_41
esc1_18h_41_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 47

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_47
esc1_18h_47_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 42

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_42
esc1_18h_42_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 43

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_43
esc1_18h_43_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 37

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_37
esc1_18h_37_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 34

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_34
esc1_18h_34_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 35

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_35
esc1_18h_35_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 33

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_33
esc1_18h_33_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 36

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_36
esc1_18h_36_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 30

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_30
esc1_18h_30_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 29

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_29
esc1_18h_29_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 44

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_44
esc1_18h_44_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 28

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_28
esc1_18h_28_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 40

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_40
esc1_18h_40_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 27

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_27
esc1_18h_27_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 25

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_25
esc1_18h_25_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 24

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_24
esc1_18h_24_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 20

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_20
esc1_18h_20_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 19

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_19
esc1_18h_19_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 26

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_26
esc1_18h_26_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 31

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_31
esc1_18h_31_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 21

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_21
esc1_18h_21_rsem


title: YTB_2

city: Lausanne

first: Jean-Yves

last: Roignant

address: genopode building

country: Switzerland

institute: University of Lausanne

data_processing:
The samples were sequenced on one flowcelll on the Illumina HiSeq2500 (HiSeq Control software version 2.2.58), readlength 71 bp PE
Mapping was done using Star (v. 2.4.0h), secondary alignments were filtered. Mapping was done against BDGP6 (ensembl release 79).
After mapping reads were counted using htseq-count  (0.6.1p1) with ensemble annotation release 79.
Differential expression analysis was done using DESeq2 (v. 1.6.3 )and differential splicing analysis was done using rmats (3.0.9).
Genome_build: BDGP6 Ensembl release 79
Supplementary_files_format_and_content: [.txt] raw counts per gene (htseq output)

molecule: polyA RNA

organism: Drosophila melanogaster

source_name: YTB

growth_protocol: Flies were raised at 25°C under standard conditions

extract_protocol:
RNA extraction was performed via TRIzol and mRNA purification using Oligotex mRNA Kit from Qiagen
Libraries were prepared according to the TruSeq Stranded mRNA library protocol (Illiumina)

treatment_protocol: Crispr/Cas9 mutant flies

tag: genotype/variation

tag: gender

value: female

value: 2-3 days old

tag: tissue

value: whole flies


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 18

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_18
esc1_18h_18_rsem


title: YTB_1


title: WT_3

source_name: WT


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 22

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_22
esc1_18h_22_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 16

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_16
esc1_18h_16_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 17

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_17
esc1_18h_17_rsem


title: WT_2


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 15

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_15
esc1_18h_15_rsem


title: IME4_3


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 32

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_32
esc1_18h_32_rsem


title: WT_1


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 14

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_14
esc1_18h_14_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 23

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_23
esc1_18h_23_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 13

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_13
esc1_18h_13_rsem


title: IME4_2


title: Control_rep3

data_processing:
Libraries were sequenced on  Illumina HiSeq 2500 on 2 High output flowcells. Basecalling was done using CASAVA 1.8.4. Readlength was 71 bp paired end.
Mapping was done using Star (v. 2.4.0h), secondary alignments were filtered. Mapping was done agaisnt BDGP6 (ensembl release 79).
Read on genes were counted using HtSeq count (v. 0.6.1.p1)
Differential expression analysis was done using DESeq2 (v. 1.6.3)
Differential splicing analysis was done using rMATS (v. 3.0.9)
Genome_build: BDGP6 ensembl release 79
Supplementary_files_format_and_content: htseq count counted reads are provided as processed data files

source_name: Control, S2R+ cells

growth_protocol: S2R+ cells were grown on standard conditions at room temperature

extract_protocol:
Total RNA was isolated using Trizol reagent (Invitrogen). mRNA was purified by using two rounds of purification with Dynabeads Oligo (dT)25 (Invitrogen)
Libraries were made following Illumina Truseq sequencing Kit (Illumina)

treatment_protocol: Control cells or cells depleted for Ime4, CG7818, Fl(2)d, Ime4-CG7818, CG6422 and YT521-B

tag: cell line

value: S2R+ cells

value: embryonic cells

value: control


title: IME4_1


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 9

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_9
esc1_18h_9_rsem

tag: strain

value: ES-derived embryoid bodies with induced transcription factors


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 10

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_10
esc1_18h_10_rsem

tag: treatment


title: Control_rep1

tag: cell type


title: Control_rep2


title: Single-cell RNA-seq in EB+24hrDox(iNgn2.Isl1.Lhx3.V5) cell 13

description:
EB+24hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_13
esc1_24h_13_rsem


title: YTB_3


title: YT521_rep3

source_name: YT521, S2R+ cells

value: depleted for YT521


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 8

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_8
esc1_18h_8_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 7

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_7
esc1_18h_7_rsem


title: YT521_rep2


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 5

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_5
esc1_18h_5_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 6

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_6
esc1_18h_6_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 4

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_4
esc1_18h_4_rsem


title: CG6422_rep2

source_name: CG6422, S2R+ cells

value: depleted for CG6422


title: CG6422_rep3


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 3

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_3
esc1_18h_3_rsem


title: CG6422_rep1


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 12

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_12
esc1_18h_12_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 11

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_11
esc1_18h_11_rsem


title: YT521_rep1


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 2

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_2
esc1_18h_2_rsem


title: Single-cell RNA-seq in EB+18hrDox(iNgn2.Isl1.Lhx3.V5) cell 1

description:
EB+18hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_1
esc1_18h_1_rsem


title: Ime4_CG7818_rep3

source_name: Ime4, S2R+ cells

value: depleted for Ime4


title: Ime4_CG7818_rep2


title: Ime4_CG7818_rep1


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 95

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_95
esc1_12h_95_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 96

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_96
esc1_12h_96_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 94

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_94
esc1_12h_94_rsem


title: Fl2d_rep3

source_name: Fl2d, S2R+ cells

value: depleted for Fl2d


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 93

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_93
esc1_12h_93_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 92

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_92
esc1_12h_92_rsem


title: Fl2d_rep2


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 89

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_89
esc1_12h_89_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 91

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_91
esc1_12h_91_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 88

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_88
esc1_12h_88_rsem


title: Ime4_rep3


title: CG7818_rep1

source_name: CG7818, S2R+ cells

value: depleted for CG7818


title: CG7818_rep2


title: CG7818_rep3


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 86

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_86
esc1_12h_86_rsem


title: Ime4_rep2


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 87

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_87
esc1_12h_87_rsem


title: Ime4_rep1


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 85

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_85
esc1_12h_85_rsem


title: wt_2

data_processing:
Libraries were sequenced on  Illumina HiSeq 2500 on 2 High output flowcells. Basecalling was done using CASAVA 1.8.4. Readlength was 71 bp paired end.
Mapping was done using Star (v. 2.4.0h), secondary alignments were filtered. Mapping was done against BDGP6 (ensembl release 79).
Mapped reads were filtered for mitochondiral and rRNA reads before counting (reference rDNA and dmel_mitochondrion_genome).
Read on genes were counted using HtSeq count (v. 0.6.1.p1)
Differential expression analysis was done using DESeq2 (v. 1.6.3)
Differential splicing analysis was done using rMATS (v. 3.0.9)
Genome_build: BDGP6 ensembl release 79
Supplementary_files_format_and_content: htseq count counted reads are provided as processed data files

source_name: wt, 1-2 day old female adult heads

growth_protocol: Flies raised on standard conditions (25 °C, 60% humidity)

extract_protocol:
Total RNA was isolated using Trizol reagent (Invitrogen). mRNA was purified by using two rounds of purification with Dynabeads Oligo (dT)25 (Invitrogen)
Libraries were made following NEBNext Ultra directional RNA kit protocol

treatment_protocol: Heterozygous and homozygous flies for Ime4 were compared to control flies

value: 1-2 days old

tag: developmental stage

value: adult

value: head


title: wt_1


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 83

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_83
esc1_12h_83_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 84

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_84
esc1_12h_84_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 82

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_82
esc1_12h_82_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 81

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_81
esc1_12h_81_rsem


title: Fl2d_rep1


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 80

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_80
esc1_12h_80_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 79

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_79
esc1_12h_79_rsem


title: Ime4hom_1

source_name: Ime4hom, 1-2 day old female adult heads

value: homozygous for Ime4


title: Ime4hom_2


title: Ime4het_2

source_name: Ime4het, 1-2 day old female adult heads

value: heterozygous for Ime4


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 90

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_90
esc1_12h_90_rsem


title: Ime4hom_3

value: female


title: Ime4het_3


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 78

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_78
esc1_12h_78_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 77

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_77
esc1_12h_77_rsem


title: Ime4het_1


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 76

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_76
esc1_12h_76_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 75

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_75
esc1_12h_75_rsem


title: Single-cell RNA-seq in EB+12hrDox(iNgn2.Isl1.Lhx3.V5) cell 74

description:
EB+12hrDox(iNgn2.Isl1.Lhx3.V5).single-cell-RNA-seq.cell_74
esc1_12h_74_rsem