title: polyA mRNA RNA-seq from liver (ENCLB555AYX)

description:
https://www.encodeproject.org/experiments/ENCSR000BYS/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week liver tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYS
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-06-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AYX
size range: >200
spikeins used: /references/ENCSR402QNO/

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/a8fae1ba-b056-4a49-9749-6b3a4b929fb6/@@download/attachment/LID21043.pdf

value: Liver

value: ENCBS279ENC at ENCODE; https://www.encodeproject.org/ENCBS279ENC/


title: polyA mRNA RNA-seq from thymus (ENCLB555AXY)

status: Public on Dec 07 2016

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR000BYV/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week thymus tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYV
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-02-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AXY
size range: >200
spikeins used: /references/ENCSR402QNO/

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Mus musculus

source_name: Mus musculus strain C57BL/6J thymus tissue mixed sex adult (8 weeks)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/bfe5107e-ab19-40eb-82b3-ad8867369164/@@download/attachment/LID20922.pdf

value: thymus

value: tissue

tag: description

value: Thymus

tag: biosample encode accession

tag: dev stage

value: adult

tag: Sex

value: pooled male and female

tag: age

value: 8 week

tag: health state

value: unknown

tag: lab

value: Thomas Gingeras, CSHL

tag: link

value: ENCBS308ENC at ENCODE; https://www.encodeproject.org/ENCBS308ENC/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: polyA mRNA RNA-seq from kidney (ENCLB555AYS)

description:
https://www.encodeproject.org/experiments/ENCSR000BYR/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week kidney tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYR
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-02-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AYS
size range: >200
spikeins used: /references/ENCSR402QNO/

source_name: Mus musculus strain C57BL/6J kidney tissue mixed sex adult (8 weeks)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/b83965a5-d715-410b-9e71-0893a1e6663f/@@download/attachment/LID20872.pdf

value: kidney

value: Kidney

value: ENCBS269ENC at ENCODE; https://www.encodeproject.org/ENCBS269ENC/


title: polyA mRNA RNA-seq from colon (ENCLB555AYL)

description:
https://www.encodeproject.org/experiments/ENCSR000BYP/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week colon tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYP
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-02-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AYL
size range: >200
spikeins used: /references/ENCSR402QNO/

source_name: Mus musculus strain C57BL/6J colon tissue mixed sex adult (8 weeks)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/875274eb-5f40-4595-afa5-e61a28ae5748/@@download/attachment/LID21041.pdf

value: colon

value: Colon

value: ENCBS257ENC at ENCODE; https://www.encodeproject.org/ENCBS257ENC/


title: polyA mRNA RNA-seq from kidney (ENCLB555AZK)

description:
https://www.encodeproject.org/experiments/ENCSR000BYR/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week kidney tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYR
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-02-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AZK
size range: >200
spikeins used: /references/ENCSR402QNO/

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/7221a81e-802f-49d5-97bf-172975988ec3/@@download/attachment/LID20873.pdf

value: ENCBS270ENC at ENCODE; https://www.encodeproject.org/ENCBS270ENC/


title: polyA mRNA RNA-seq from adrenal gland (ENCLB555AYD)

description:
https://www.encodeproject.org/experiments/ENCSR000BYX/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week adrenal gland tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYX
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-06-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AYD
size range: >200
spikeins used: /references/ENCSR402QNO/

source_name: Mus musculus strain C57BL/6J adrenal gland tissue adult (8 weeks)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/70536178-2102-4dc8-8da0-084cf28d42ff/@@download/attachment/LID20728.pdf

value: adrenal gland

value: Adrenal gland

value: not collected

value: ENCBS244ENC at ENCODE; https://www.encodeproject.org/ENCBS244ENC/


title: genetic modification DNase-seq from K562 (ENCLB987VNX)

description:
https://www.encodeproject.org/experiments/ENCSR982JMP/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR982JMP
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB987VNX

library_source: genomic

molecule: genomic DNA

organism: Homo sapiens

source_name: Homo sapiens K562 immortalized cell line genetically modified (deletion) using TALEs

tag: line

value: immortalized cell line

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: John Stamatoyannopoulos, UW

value: ENCBS363HPO at ENCODE; https://www.encodeproject.org/ENCBS363HPO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from HeLa-S3 (ENCLB036JHP)

description:
https://www.encodeproject.org/experiments/ENCSR959ZXU/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR959ZXU
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB036JHP

source_name: Homo sapiens HeLa-S3 immortalized cell line

value: Cervical adenocarcinoma

value: 31 year

value: cervical adenocarcinoma

value: ENCBS423QWP at ENCODE; https://www.encodeproject.org/ENCBS423QWP/

value: Derived from ENCODE donor ENCDO000AAB; https://www.encodeproject.org/ENCDO000AAB/

value: ENCODE dbxrefs Cellosaurus CVCL_0058; http://web.expasy.org/cellosaurus/CVCL_0058


title: polyA mRNA RNA-seq from lung (ENCLB555AZJ)

description:
https://www.encodeproject.org/experiments/ENCSR000BYT/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week lung tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYT
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-02-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AZJ
size range: >200
spikeins used: /references/ENCSR402QNO/

source_name: Mus musculus strain C57BL/6J lung tissue mixed sex adult (8 weeks)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/efa838bb-0525-4f29-bff4-09f73094839a/@@download/attachment/LID20921.pdf

value: lung

value: tissue

value: Lung

value: pooled male and female

value: 8 week

value: unknown

value: Thomas Gingeras, CSHL

value: ENCBS292ENC at ENCODE; https://www.encodeproject.org/ENCBS292ENC/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: polyA mRNA RNA-seq from heart (ENCLB555AZB)

description:
https://www.encodeproject.org/experiments/ENCSR000BYQ/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week heart tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYQ
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-02-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AZB
size range: >200
spikeins used: /references/ENCSR402QNO/

source_name: Mus musculus strain C57BL/6J heart tissue mixed sex adult (8 weeks)

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/489ab504-c926-44c3-880e-3db46a6bb131/@@download/attachment/LID20870.pdf

value: heart

value: Heart

value: adult

value: ENCBS267ENC at ENCODE; https://www.encodeproject.org/ENCBS267ENC/


title: polyA mRNA RNA-seq from colon (ENCLB555AYZ)

description:
https://www.encodeproject.org/experiments/ENCSR000BYP/
***************
biological replicate number: 1
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week colon tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYP
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-02-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555AYZ
size range: >200
spikeins used: /references/ENCSR402QNO/

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/4f6f9e7b-2ace-484e-99dd-8472641fb090/@@download/attachment/LID21040.pdf

value: colon

value: Colon

value: ENCBS256ENC at ENCODE; https://www.encodeproject.org/ENCBS256ENC/


title: DNase-seq from A172 (ENCLB587WPM)

description:
https://www.encodeproject.org/experiments/ENCSR932KWJ/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on cell line A172 (53 year old male human brain, glioblastoma)
experiment encode accession: ENCSR932KWJ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB587WPM

source_name: Homo sapiens A172 immortalized cell line

value: immortalized cell line

value: 53 year

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS225AJI at ENCODE; https://www.encodeproject.org/ENCBS225AJI/

value: Derived from ENCODE donor ENCDO934VEN; https://www.encodeproject.org/ENCDO934VEN/

value: ENCODE dbxrefs Cellosaurus CVCL_0131; http://web.expasy.org/cellosaurus/CVCL_0131


title: DNase-seq from PC-9 (ENCLB078JFN)

description:
https://www.encodeproject.org/experiments/ENCSR940NLN/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on PC-9 cell line (human lung adenocarcinoma)
experiment encode accession: ENCSR940NLN
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB078JFN

source_name: Homo sapiens PC-9 immortalized cell line

value: unknown

value: not collected

value: ENCBS761VSF at ENCODE; https://www.encodeproject.org/ENCBS761VSF/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: DNase-seq from A172 (ENCLB693NHX)

description:
https://www.encodeproject.org/experiments/ENCSR932KWJ/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on cell line A172 (53 year old male human brain, glioblastoma)
experiment encode accession: ENCSR932KWJ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB693NHX

value: adult

value: ENCBS874LTK at ENCODE; https://www.encodeproject.org/ENCBS874LTK/


title: DNase-seq from HeLa-S3 (ENCLB257LLW)

description:
https://www.encodeproject.org/experiments/ENCSR959ZXU/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR959ZXU
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB257LLW

value: Cervical adenocarcinoma

value: female

value: 31 year

value: cervical adenocarcinoma

value: ENCBS229UDI at ENCODE; https://www.encodeproject.org/ENCBS229UDI/

value: Derived from ENCODE donor ENCDO000AAB; https://www.encodeproject.org/ENCDO000AAB/

value: ENCODE dbxrefs Cellosaurus CVCL_0058; http://web.expasy.org/cellosaurus/CVCL_0058


title: DNase-seq from spinal cord (ENCLB216GJK)

description:
https://www.encodeproject.org/experiments/ENCSR910OQF/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 59 day fetal female human spinal cord
experiment encode accession: ENCSR910OQF
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB216GJK

source_name: Homo sapiens spinal cord tissue female fetal (59 days)

value: spinal cord

value: tissue

value: fetal

value: 59 day

value: John Stamatoyannopoulos, UW

value: ENCBS665NIQ at ENCODE; https://www.encodeproject.org/ENCBS665NIQ/

value: Derived from ENCODE donor ENCDO294EUZ; https://www.encodeproject.org/ENCDO294EUZ/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB032SYF)

description:
https://www.encodeproject.org/experiments/ENCSR937UWI/
***************
biological replicate number: 2
technical replicate number: 1,2
description:
experiment encode accession: ENCSR937UWI
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB032SYF

source_name: Homo sapiens hematopoietic multipotent progenitor primary cell male adult (25 years) treated with interleukin-3 , kit ligand , hydrocortisone succinate , erythropoietin

value: primary cell

tag: treatments

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: male

value: 25 year

value: ENCBS854FBC at ENCODE; https://www.encodeproject.org/ENCBS854FBC/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: genetic modification DNase-seq from K562 (ENCLB255YGZ)

description:
https://www.encodeproject.org/experiments/ENCSR945ENZ/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR945ENZ
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB255YGZ

value: immortalized cell line

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS611GYD at ENCODE; https://www.encodeproject.org/ENCBS611GYD/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from spinal cord (ENCLB532ZRI)

description:
https://www.encodeproject.org/experiments/ENCSR910OQF/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on 59 day fetal female human spinal cord
experiment encode accession: ENCSR910OQF
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB532ZRI
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Homo sapiens spinal cord tissue male fetal (72 days)

value: spinal cord

value: tissue

value: fetal

value: 72 day

value: John Stamatoyannopoulos, UW

value: ENCBS144CBA at ENCODE; https://www.encodeproject.org/ENCBS144CBA/

value: Derived from ENCODE donor ENCDO300THQ; https://www.encodeproject.org/ENCDO300THQ/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB814MND)

description:
https://www.encodeproject.org/experiments/ENCSR855FOP/
***************
biological replicate number: 2
technical replicate number: 1,2
description:
experiment encode accession: ENCSR855FOP
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB814MND
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: primary cell

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: male

value: 25 year

value: ENCBS787END at ENCODE; https://www.encodeproject.org/ENCBS787END/


title: polyA mRNA RNA-seq from heart (ENCLB555BAA)

description:
https://www.encodeproject.org/experiments/ENCSR000BYQ/
***************
biological replicate number: 2
technical replicate number: 1
description: The libraries contained in this experiment come from adult 8 week heart tissue from mixed sex littermates in mouse strain C57BL/6J. They are stranded PE76 Illumina GAIIx RNA-Seq libraries from rRNA-depleted Poly-A+ RNA > 200 nucleotides in size.
experiment encode accession: ENCSR000BYQ
assay title: polyA mRNA RNA-seq
assembly: mm10
encode release date: 2012-02-29
lab: Thomas Gingeras, CSHL
library encode accession: ENCLB555BAA
size range: >200
spikeins used: /references/ENCSR402QNO/

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/3e43f7ad-c76b-47fc-920b-068311cd0b34/@@download/attachment/LID20871.pdf

value: heart

value: Heart

value: adult

value: pooled male and female

value: 8 week

value: unknown

value: Thomas Gingeras, CSHL

value: ENCBS268ENC at ENCODE; https://www.encodeproject.org/ENCBS268ENC/

value: Derived from ENCODE donor ENCDO072AAA; https://www.encodeproject.org/ENCDO072AAA/


title: genetic modification DNase-seq from K562 (ENCLB177FEQ)

description:
https://www.encodeproject.org/experiments/ENCSR873PLF/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR873PLF
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB177FEQ

value: immortalized cell line

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: John Stamatoyannopoulos, UW

value: ENCBS526GWV at ENCODE; https://www.encodeproject.org/ENCBS526GWV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB245PAL)

description:
https://www.encodeproject.org/experiments/ENCSR855FOP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR855FOP
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB245PAL
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: primary cell

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: male

value: 25 year

value: ENCBS835VCD at ENCODE; https://www.encodeproject.org/ENCBS835VCD/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB658VAX)

description:
https://www.encodeproject.org/experiments/ENCSR845CFB/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on 25 year old human male hematopoietic multipotent progenitor cell
experiment encode accession: ENCSR845CFB
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB658VAX

value: Day 8 (T8)

value: adult

value: ENCBS418LVC at ENCODE; https://www.encodeproject.org/ENCBS418LVC/


title: genetic modification DNase-seq from K562 (ENCLB028DLB)

description:
https://www.encodeproject.org/experiments/ENCSR826CTO/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR826CTO
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB028DLB

value: immortalized cell line

value: ENCBS210WPX at ENCODE; https://www.encodeproject.org/ENCBS210WPX/


title: genetic modification DNase-seq from K562 (ENCLB586KIE)

description:
https://www.encodeproject.org/experiments/ENCSR997TXZ/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR997TXZ
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB586KIE

value: female

value: 53 year

value: ENCBS501AJP at ENCODE; https://www.encodeproject.org/ENCBS501AJP/


title: genetic modification DNase-seq from K562 (ENCLB088UPJ)

description:
https://www.encodeproject.org/experiments/ENCSR815JAA/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR815JAA
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB088UPJ

value: chronic myelogenous leukemia (CML)

value: John Stamatoyannopoulos, UW

value: ENCBS598STC at ENCODE; https://www.encodeproject.org/ENCBS598STC/


title: genetic modification DNase-seq from K562 (ENCLB754UFF)

description:
https://www.encodeproject.org/experiments/ENCSR818YUC/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR818YUC
assay title: genetic modification DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-07-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB754UFF

value: ENCBS228CEB at ENCODE; https://www.encodeproject.org/ENCBS228CEB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from amniotic stem cell (ENCLB013SKJ)

description:
https://www.encodeproject.org/experiments/ENCSR820WLP/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR820WLP
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB013SKJ
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Homo sapiens amniotic stem cell male fetal (15 weeks)

value: amniotic stem cell

value: stem cell

value: Dedifferentiated Mesenchymal Stem Cells from Amniotic Fluid

value: fetal

value: male

value: 15 week

value: ENCBS167CXV at ENCODE; https://www.encodeproject.org/ENCBS167CXV/

value: Derived from ENCODE donor ENCDO942PSS; https://www.encodeproject.org/ENCDO942PSS/


title: DNase-seq from urinary bladder (ENCLB923WTD)

description:
https://www.encodeproject.org/experiments/ENCSR813CKU/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 76 day old fetal male human urinary bladder tissue
experiment encode accession: ENCSR813CKU
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB923WTD

source_name: Homo sapiens urinary bladder tissue male fetal (76 days)

value: urinary bladder

value: tissue

value: 76 day

value: ENCBS241XYR at ENCODE; https://www.encodeproject.org/ENCBS241XYR/

value: Derived from ENCODE donor ENCDO647EYG; https://www.encodeproject.org/ENCDO647EYG/


title: DNase-seq from H4 (ENCLB188QIH)

description:
https://www.encodeproject.org/experiments/ENCSR809CEA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR809CEA
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB188QIH

source_name: Homo sapiens H4 immortalized cell line

value: immortalized cell line

value: adult

value: 37 year

value: John Stamatoyannopoulos, UW

value: ENCBS902ISQ at ENCODE; https://www.encodeproject.org/ENCBS902ISQ/

value: Derived from ENCODE donor ENCDO337AAA; https://www.encodeproject.org/ENCDO337AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_1239; http://web.expasy.org/cellosaurus/CVCL_1239


title: DNase-seq from PC-9 (ENCLB625GCM)

description:
https://www.encodeproject.org/experiments/ENCSR940NLN/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on PC-9 cell line (human lung adenocarcinoma)
experiment encode accession: ENCSR940NLN
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB625GCM

value: unknown

value: not collected

value: ENCBS480XRH at ENCODE; https://www.encodeproject.org/ENCBS480XRH/

value: Derived from ENCODE donor ENCDO647UHQ; https://www.encodeproject.org/ENCDO647UHQ/

value: ENCODE dbxrefs Cellosaurus CVCL_B260; http://web.expasy.org/cellosaurus/CVCL_B260


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB247MTX)

description:
https://www.encodeproject.org/experiments/ENCSR937UWI/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR937UWI
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB247MTX

value: primary cell

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: male

value: 25 year

value: ENCBS955LWD at ENCODE; https://www.encodeproject.org/ENCBS955LWD/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: DNase-seq from eye (ENCLB855SXK)

description:
https://www.encodeproject.org/experiments/ENCSR782XFY/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 76 day old fetal male human eye tissue
experiment encode accession: ENCSR782XFY
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB855SXK

source_name: Homo sapiens eye tissue male fetal (76 days)

value: eye

value: tissue

value: fetal

value: 76 day

value: ENCBS129DWJ at ENCODE; https://www.encodeproject.org/ENCBS129DWJ/

value: Derived from ENCODE donor ENCDO647EYG; https://www.encodeproject.org/ENCDO647EYG/


title: DNase-seq from eye (ENCLB361ZWP)

description:
https://www.encodeproject.org/experiments/ENCSR782XFY/
***************
biological replicate number: 2
technical replicate number: 2,1
description: DNase-seq on 76 day old fetal male human eye tissue
experiment encode accession: ENCSR782XFY
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB361ZWP

source_name: Homo sapiens eye tissue fetal (56 days)

value: 56 day

value: John Stamatoyannopoulos, UW

value: ENCBS987GGI at ENCODE; https://www.encodeproject.org/ENCBS987GGI/

value: Derived from ENCODE donor ENCDO708OLI; https://www.encodeproject.org/ENCDO708OLI/


title: DNase-seq from glomerular visceral epithelial cell (ENCLB770LFI)

description:
https://www.encodeproject.org/experiments/ENCSR785BDQ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR785BDQ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB770LFI

source_name: Homo sapiens glomerular visceral epithelial primary cell child (3 years)

value: glomerular visceral epithelial cell

value: child

value: not collected

value: 3 year

value: ENCBS995QIF at ENCODE; https://www.encodeproject.org/ENCBS995QIF/

value: Derived from ENCODE donor ENCDO879VOF; https://www.encodeproject.org/ENCDO879VOF/


title: DNase-seq from glomerular visceral epithelial cell (ENCLB955BJP)

description:
https://www.encodeproject.org/experiments/ENCSR785BDQ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR785BDQ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB955BJP

value: primary cell

value: ENCBS117LCZ at ENCODE; https://www.encodeproject.org/ENCBS117LCZ/


title: DNase-seq from globus pallidus (ENCLB754WQC)

description:
https://www.encodeproject.org/experiments/ENCSR771DAX/
***************
biological replicate number: 1
technical replicate number: 2,1
description: DNase-seq on 84 year old adult male human globus pallidal tissue
experiment encode accession: ENCSR771DAX
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-09-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB754WQC

source_name: Homo sapiens globus pallidus tissue male adult (84 years)

value: globus pallidus

value: tissue

value: adult

value: male

value: 84 year

value: ENCBS369KEX at ENCODE; https://www.encodeproject.org/ENCBS369KEX/

value: Derived from ENCODE donor ENCDO240JUB; https://www.encodeproject.org/ENCDO240JUB/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB260IQZ)

description:
https://www.encodeproject.org/experiments/ENCSR845CFB/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 25 year old human male hematopoietic multipotent progenitor cell
experiment encode accession: ENCSR845CFB
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB260IQZ

value: Day 8 (T8)

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: 25 year

value: John Stamatoyannopoulos, UW

value: ENCBS169JBH at ENCODE; https://www.encodeproject.org/ENCBS169JBH/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: DNase-seq from tongue (ENCLB323PCN)

description:
https://www.encodeproject.org/experiments/ENCSR759UNY/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 76 day old fetal female human tongue tissue
experiment encode accession: ENCSR759UNY
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB323PCN

source_name: Homo sapiens tongue tissue female fetal (76 days)

value: tongue

value: fetal

value: female

value: 76 day

value: ENCBS321GUH at ENCODE; https://www.encodeproject.org/ENCBS321GUH/

value: Derived from ENCODE donor ENCDO237NAG; https://www.encodeproject.org/ENCDO237NAG/


title: DNase-seq from globus pallidus (ENCLB853MWO)

description:
https://www.encodeproject.org/experiments/ENCSR771DAX/
***************
biological replicate number: 2
technical replicate number: 2,1
description: DNase-seq on 84 year old adult male human globus pallidal tissue
experiment encode accession: ENCSR771DAX
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-09-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB853MWO

source_name: Homo sapiens globus pallidus tissue male adult (78 years)

value: globus pallidus

value: tissue

value: adult

value: 78 year

value: ENCBS704OFF at ENCODE; https://www.encodeproject.org/ENCBS704OFF/

value: Derived from ENCODE donor ENCDO317XRR; https://www.encodeproject.org/ENCDO317XRR/


title: DNase-seq from pons (ENCLB116JVX)

description:
https://www.encodeproject.org/experiments/ENCSR829MXU/
***************
biological replicate number: 1
technical replicate number: 2,1
description:
experiment encode accession: ENCSR829MXU
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB116JVX
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens pons tissue male adult (78 years)

value: pons

value: male

value: ENCBS465GRS at ENCODE; https://www.encodeproject.org/ENCBS465GRS/


title: genetic modification DNase-seq from K562 (ENCLB618IYU)

description:
https://www.encodeproject.org/experiments/ENCSR744QGM/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR744QGM
assay title: genetic modification DNase-seq
assembly: hg19, GRCh38
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB618IYU

source_name: Homo sapiens K562 immortalized cell line genetically modified (deletion) using TALEs

value: immortalized cell line

value: 53 year

value: chronic myelogenous leukemia (CML)

value: John Stamatoyannopoulos, UW

value: ENCBS358PHP at ENCODE; https://www.encodeproject.org/ENCBS358PHP/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from tongue (ENCLB343ADS)

description:
https://www.encodeproject.org/experiments/ENCSR759UNY/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on 76 day old fetal female human tongue tissue
experiment encode accession: ENCSR759UNY
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB343ADS

source_name: Homo sapiens tongue tissue female fetal (59 days)

value: tongue

value: fetal

value: female

value: 59 day

value: ENCBS267KML at ENCODE; https://www.encodeproject.org/ENCBS267KML/

value: Derived from ENCODE donor ENCDO294EUZ; https://www.encodeproject.org/ENCDO294EUZ/


title: DNase-seq from EL (ENCLB130ONY)

description:
https://www.encodeproject.org/experiments/ENCSR691MQJ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR691MQJ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-08-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB130ONY

source_name: Homo sapiens EL immortalized cell line

value: EL

value: EL (BJ-hTert-SV40)

value: newborn

value: unknown

value: normal

value: ENCBS910LXL at ENCODE; https://www.encodeproject.org/ENCBS910LXL/

value: Derived from ENCODE donor ENCDO000AAG; https://www.encodeproject.org/ENCDO000AAG/


title: DNase-seq from EL (ENCLB267LQU)

description:
https://www.encodeproject.org/experiments/ENCSR691MQJ/
***************
biological replicate number: 1
technical replicate number: 3
description:
experiment encode accession: ENCSR691MQJ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-08-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB267LQU

value: immortalized cell line

value: male

value: John Stamatoyannopoulos, UW


title: DNase-seq from L1-S8R (ENCLB280SCP)

description:
https://www.encodeproject.org/experiments/ENCSR746ZPP/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR746ZPP
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB280SCP
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Homo sapiens L1-S8R induced pluripotent stem cell line

value: induced pluripotent stem cell line

value: L1-S8R is a human iPSC line derived from L1-S8 after transduction with lentiviral vector pLM-fSV2A (Papapetrou et al NBT 2011) expressing OCT4, SOX2, KLF4 and cMYC.

value: not collected

value: ENCBS293PZC at ENCODE; https://www.encodeproject.org/ENCBS293PZC/

value: Derived from ENCODE donor ENCDO430ZDZ; https://www.encodeproject.org/ENCDO430ZDZ/


title: genetic modification DNase-seq from K562 (ENCLB729GTH)

description:
https://www.encodeproject.org/experiments/ENCSR724SCF/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR724SCF
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB729GTH

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS491FIM at ENCODE; https://www.encodeproject.org/ENCBS491FIM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from midbrain (ENCLB376WDO)

description:
https://www.encodeproject.org/experiments/ENCSR706IDL/
***************
biological replicate number: 1
technical replicate number: 1,2
description: DNase-seq on 78 year old male human adult midbrain tissue
experiment encode accession: ENCSR706IDL
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB376WDO

source_name: Homo sapiens midbrain tissue male adult (78 years)

value: midbrain

value: tissue

value: 78 year

value: ENCBS278TPS at ENCODE; https://www.encodeproject.org/ENCBS278TPS/

value: Derived from ENCODE donor ENCDO317XRR; https://www.encodeproject.org/ENCDO317XRR/


title: DNase-seq from HT-29 (ENCLB387UAW)

description:
https://www.encodeproject.org/experiments/ENCSR814KRX/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on immortalized cell line HT-29, epithelial cells from a 44 year old female adult human colon with a colorectal adenocarcinoma.
experiment encode accession: ENCSR814KRX
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-10-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB387UAW

source_name: Homo sapiens HT-29 immortalized cell line

value: immortalized cell line

value: adenocarcinoma colon cells

value: 44 year

value: colorectal adenocarcinoma

value: John Stamatoyannopoulos, UW

value: ENCBS914HXH at ENCODE; https://www.encodeproject.org/ENCBS914HXH/

value: Derived from ENCODE donor ENCDO347AAA; https://www.encodeproject.org/ENCDO347AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0320; http://web.expasy.org/cellosaurus/CVCL_0320

value: ATCC sample source; http://www.atcc.org/products/all/HTB-38.aspx


title: DNase-seq from SJCRH30 (ENCLB654JWF)

description:
https://www.encodeproject.org/experiments/ENCSR700ILE/
***************
biological replicate number: 1
technical replicate number: 1,3
description: DNase-seq of SJCHR30
experiment encode accession: ENCSR700ILE
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-15
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB654JWF
size range: 200-500

source_name: Homo sapiens SJCRH30 immortalized cell line

value: This immortalized cell line was established from cells from the metastatic site of the bone marrow of a child with rhabdomyosarcoma.

value: unknown

value: male

value: 17 year

value: ENCBS504BIZ at ENCODE; https://www.encodeproject.org/ENCBS504BIZ/

value: Derived from ENCODE donor ENCDO339AAA; https://www.encodeproject.org/ENCDO339AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_0041; http://web.expasy.org/cellosaurus/CVCL_0041


title: DNase-seq from heart (ENCLB142FRE)

description:
https://www.encodeproject.org/experiments/ENCSR705CNJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR705CNJ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB142FRE

source_name: Homo sapiens heart tissue male fetal (76 days)

value: heart

value: tissue

value: fetal

value: 76 day

value: ENCBS619VKQ at ENCODE; https://www.encodeproject.org/ENCBS619VKQ/

value: Derived from ENCODE donor ENCDO647EYG; https://www.encodeproject.org/ENCDO647EYG/


title: DNase-seq from ELF-1 (ENCLB083SLH)

description:
https://www.encodeproject.org/experiments/ENCSR678ILN/
***************
biological replicate number: 2
technical replicate number: 1,2
description:
experiment encode accession: ENCSR678ILN
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB083SLH

source_name: Homo sapiens ELF-1 stem cell female

value: stem cell

value: female

value: John Stamatoyannopoulos, UW

value: ENCBS467EKW at ENCODE; https://www.encodeproject.org/ENCBS467EKW/

value: Derived from ENCODE donor ENCDO524DZC; https://www.encodeproject.org/ENCDO524DZC/


title: DNase-seq from EL (ENCLB867XAL)

description:
https://www.encodeproject.org/experiments/ENCSR691MQJ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR691MQJ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-08-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB867XAL

value: EL

value: immortalized cell line

value: EL (BJ-htert-SV40)

value: newborn

value: unknown

value: normal

value: ENCBS741IJV at ENCODE; https://www.encodeproject.org/ENCBS741IJV/

value: Derived from ENCODE donor ENCDO000AAG; https://www.encodeproject.org/ENCDO000AAG/


title: DNase-seq from bipolar spindle neuron (ENCLB133NKD)

description:
https://www.encodeproject.org/experiments/ENCSR626RVD/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR626RVD
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-10
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB133NKD
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens bipolar spindle neuron in vitro differentiated cells male adult (53 years) derived from induced pluripotent stem cell

value: bipolar spindle neuron

value: in vitro differentiated cells

value: These are bipolar neurons created from iPSC from the PGP1 donor from the Personal Genome Project (PGP).

value: 53 year

value: adult

value: male

value: Thomas Gingeras, CSHL

value: ENCBS374AAA at ENCODE; https://www.encodeproject.org/ENCBS374AAA/

value: Derived from ENCODE donor ENCDO336AAA; https://www.encodeproject.org/ENCDO336AAA/


title: genetic modification DNase-seq from K562 (ENCLB320DTC)

description:
https://www.encodeproject.org/experiments/ENCSR636VCX/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR636VCX
assay title: genetic modification DNase-seq
assembly: hg19, GRCh38
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB320DTC

value: female

value: chronic myelogenous leukemia (CML)

value: John Stamatoyannopoulos, UW

value: ENCBS654VZH at ENCODE; https://www.encodeproject.org/ENCBS654VZH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: genetic modification DNase-seq from K562 (ENCLB447KZF)

description:
https://www.encodeproject.org/experiments/ENCSR627GNV/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR627GNV
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB447KZF

value: immortalized cell line

value: ENCBS058KXV at ENCODE; https://www.encodeproject.org/ENCBS058KXV/


title: DNase-seq from bipolar spindle neuron (ENCLB727RXR)

description:
https://www.encodeproject.org/experiments/ENCSR626RVD/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR626RVD
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-10
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB727RXR

value: bipolar spindle neuron

value: ENCBS369AAA at ENCODE; https://www.encodeproject.org/ENCBS369AAA/


title: genetic modification DNase-seq from K562 (ENCLB669QCF)

description:
https://www.encodeproject.org/experiments/ENCSR622RJN/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR622RJN
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB669QCF

value: ENCBS323NUL at ENCODE; https://www.encodeproject.org/ENCBS323NUL/


title: DNase-seq from SJSA1 (ENCLB925FNH)

description:
https://www.encodeproject.org/experiments/ENCSR620WAR/
***************
biological replicate number: 1
technical replicate number: 2,1
description: DNase-seq on immortalized cell line SJSA1 (fibroblast from 19 year old male human adult bone with osteosarcoma, multipotential sarcoma)
experiment encode accession: ENCSR620WAR
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB925FNH

source_name: Homo sapiens SJSA1 immortalized cell line

value: 19 year

value: ENCBS327EZG at ENCODE; https://www.encodeproject.org/ENCBS327EZG/

value: Derived from ENCODE donor ENCDO197NLG; https://www.encodeproject.org/ENCDO197NLG/

value: ENCODE dbxrefs Cellosaurus CVCL_1697; http://web.expasy.org/cellosaurus/CVCL_1697


title: DNase-seq from SJSA1 (ENCLB385KTR)

description:
https://www.encodeproject.org/experiments/ENCSR620WAR/
***************
biological replicate number: 2
technical replicate number: 2,1
description: DNase-seq on immortalized cell line SJSA1 (fibroblast from 19 year old male human adult bone with osteosarcoma, multipotential sarcoma)
experiment encode accession: ENCSR620WAR
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB385KTR

value: adult

value: male

value: ENCBS489PLT at ENCODE; https://www.encodeproject.org/ENCBS489PLT/


title: DNase-seq from brain (ENCLB908OXL)

description:
https://www.encodeproject.org/experiments/ENCSR595CSH/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR595CSH
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB908OXL

source_name: Homo sapiens brain tissue male fetal (58 days)

value: brain

value: tissue

value: fetal

value: 58 day

value: ENCBS852UJL at ENCODE; https://www.encodeproject.org/ENCBS852UJL/

value: Derived from ENCODE donor ENCDO652XOU; https://www.encodeproject.org/ENCDO652XOU/


title: DNase-seq from Ammon's horn (ENCLB763IVQ)

description:
https://www.encodeproject.org/experiments/ENCSR584LUZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR584LUZ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB763IVQ

source_name: Homo sapiens Ammon's horn tissue male adult (84 years)

value: Ammon's horn

value: 84 year

value: John Stamatoyannopoulos, UW

value: ENCBS163WOJ at ENCODE; https://www.encodeproject.org/ENCBS163WOJ/

value: Derived from ENCODE donor ENCDO240JUB; https://www.encodeproject.org/ENCDO240JUB/


title: DNase-seq from lung (ENCLB099YIO)

description:
https://www.encodeproject.org/experiments/ENCSR582IPV/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR582IPV
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB099YIO

source_name: Homo sapiens lung tissue fetal (80 days)

value: lung

value: not collected

value: 80 day

value: ENCBS964WZC at ENCODE; https://www.encodeproject.org/ENCBS964WZC/

value: Derived from ENCODE donor ENCDO662IIE; https://www.encodeproject.org/ENCDO662IIE/


title: DNase-seq from lung (ENCLB437CCS)

description:
https://www.encodeproject.org/experiments/ENCSR582IPV/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR582IPV
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB437CCS

source_name: Homo sapiens lung tissue male fetal (76 days)

value: male

value: 76 day

value: ENCBS511SOC at ENCODE; https://www.encodeproject.org/ENCBS511SOC/

value: Derived from ENCODE donor ENCDO647EYG; https://www.encodeproject.org/ENCDO647EYG/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB947LFF)

description:
https://www.encodeproject.org/experiments/ENCSR564JUY/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on 25 year old human adult male hematopoietic multipotent progenitor cell line
experiment encode accession: ENCSR564JUY
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB947LFF

source_name: Homo sapiens hematopoietic multipotent progenitor primary cell male adult (25 years) treated with interleukin-3 , kit ligand , hydrocortisone succinate , erythropoietin

value: primary cell

value: Day 6 (T6)

value: adult

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: 25 year

value: ENCBS986SUJ at ENCODE; https://www.encodeproject.org/ENCBS986SUJ/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: genetic modification DNase-seq from K562 (ENCLB266LXR)

description:
https://www.encodeproject.org/experiments/ENCSR577TXK/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR577TXK
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB266LXR

value: immortalized cell line

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: John Stamatoyannopoulos, UW

value: ENCBS573CFY at ENCODE; https://www.encodeproject.org/ENCBS573CFY/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: genetic modification DNase-seq from K562 (ENCLB041LDO)

description:
https://www.encodeproject.org/experiments/ENCSR561XZU/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR561XZU
assay title: genetic modification DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-07-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB041LDO

value: ENCBS261MYX at ENCODE; https://www.encodeproject.org/ENCBS261MYX/


title: DNase-seq from ELF-1 (ENCLB123VXG)

description:
https://www.encodeproject.org/experiments/ENCSR678ILN/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR678ILN
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB123VXG

value: stem cell

value: unknown

value: ENCBS706FDR at ENCODE; https://www.encodeproject.org/ENCBS706FDR/

value: Derived from ENCODE donor ENCDO524DZC; https://www.encodeproject.org/ENCDO524DZC/


title: DNase-seq from EH (ENCLB393DEA)

description:
https://www.encodeproject.org/experiments/ENCSR548MMD/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on cell line BJ (foreskin fibroblasts from a newborn human male).
experiment encode accession: ENCSR548MMD
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB393DEA

source_name: Homo sapiens EH immortalized cell line

value: EH

value: EH (BJ-hTert)

value: newborn

value: male

value: normal

value: ENCBS683XYV at ENCODE; https://www.encodeproject.org/ENCBS683XYV/

value: Derived from ENCODE donor ENCDO000AAG; https://www.encodeproject.org/ENCDO000AAG/

value: ENCODE dbxrefs Cellosaurus CVCL_3653; http://web.expasy.org/cellosaurus/CVCL_3653


title: DNase-seq from EH (ENCLB894JDJ)

description:
https://www.encodeproject.org/experiments/ENCSR548MMD/
***************
biological replicate number: 1
technical replicate number: 5
description: DNase-seq on cell line BJ (foreskin fibroblasts from a newborn human male).
experiment encode accession: ENCSR548MMD
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB894JDJ

value: immortalized cell line

value: John Stamatoyannopoulos, UW

value: ENCBS070WLP at ENCODE; https://www.encodeproject.org/ENCBS070WLP/


title: DNase-seq from EH (ENCLB721PER)

description:
https://www.encodeproject.org/experiments/ENCSR548MMD/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on cell line BJ (foreskin fibroblasts from a newborn human male).
experiment encode accession: ENCSR548MMD
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB721PER


title: DNase-seq from EH (ENCLB892ZIU)

description:
https://www.encodeproject.org/experiments/ENCSR548MMD/
***************
biological replicate number: 2
technical replicate number: 2
description: DNase-seq on cell line BJ (foreskin fibroblasts from a newborn human male).
experiment encode accession: ENCSR548MMD
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB892ZIU


title: genetic modification DNase-seq from K562 (ENCLB030NGS)

description:
https://www.encodeproject.org/experiments/ENCSR485CIR/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR485CIR
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB030NGS

source_name: Homo sapiens K562 immortalized cell line genetically modified (deletion) using TALEs

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS193JEH at ENCODE; https://www.encodeproject.org/ENCBS193JEH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: genetic modification DNase-seq from K562 (ENCLB634FJQ)

description:
https://www.encodeproject.org/experiments/ENCSR560CCF/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR560CCF
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB634FJQ

value: TALEN-mediated homozygous DHS deletion in K562.

value: ENCBS432FLT at ENCODE; https://www.encodeproject.org/ENCBS432FLT/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB573JSZ)

description:
https://www.encodeproject.org/experiments/ENCSR493IAY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR493IAY
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB573JSZ

value: primary cell

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: male

value: 25 year

value: ENCBS303WCA at ENCODE; https://www.encodeproject.org/ENCBS303WCA/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: DNase-seq from tongue (ENCLB329UJC)

description:
https://www.encodeproject.org/experiments/ENCSR559WMK/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 72 day old male human fetal tongue tissue
experiment encode accession: ENCSR559WMK
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB329UJC

source_name: Homo sapiens tongue tissue male fetal (72 days)

value: tongue

value: tissue

value: fetal

value: 72 day

value: John Stamatoyannopoulos, UW

value: ENCBS377XXD at ENCODE; https://www.encodeproject.org/ENCBS377XXD/

value: Derived from ENCODE donor ENCDO300THQ; https://www.encodeproject.org/ENCDO300THQ/


title: DNase-seq from umbilical cord (ENCLB228TGC)

description:
https://www.encodeproject.org/experiments/ENCSR512CWR/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 76 day old male human fetal umbilical cord tissue
experiment encode accession: ENCSR512CWR
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB228TGC

source_name: Homo sapiens umbilical cord tissue male fetal (76 days)

value: umbilical cord

value: 76 day

value: ENCBS428SKC at ENCODE; https://www.encodeproject.org/ENCBS428SKC/

value: Derived from ENCODE donor ENCDO647EYG; https://www.encodeproject.org/ENCDO647EYG/


title: DNase-seq from Caki2 (ENCLB538RFP)

description:
https://www.encodeproject.org/experiments/ENCSR515EWI/
***************
biological replicate number: 2
technical replicate number: 2,1
description: DNase-seq on cell line Caki-2 (epithelial cell from 69 year old male human kidney, clear cell carcinoma)
experiment encode accession: ENCSR515EWI
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB538RFP

source_name: Homo sapiens Caki2 immortalized cell line

value: immortalized cell line

value: 69 year

value: adult

value: ENCBS461KDA at ENCODE; https://www.encodeproject.org/ENCBS461KDA/

value: Derived from ENCODE donor ENCDO140IFG; https://www.encodeproject.org/ENCDO140IFG/

value: ENCODE dbxrefs Cellosaurus CVCL_0235; http://web.expasy.org/cellosaurus/CVCL_0235


title: DNase-seq from brain (ENCLB188MGU)

description:
https://www.encodeproject.org/experiments/ENCSR475VQD/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 72 day old male human fetal brain tissue
experiment encode accession: ENCSR475VQD
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB188MGU

source_name: Homo sapiens brain tissue male fetal (72 days)

value: brain

value: male

value: ENCBS489VFT at ENCODE; https://www.encodeproject.org/ENCBS489VFT/


title: DNase-seq from brain (ENCLB113NKB)

description:
https://www.encodeproject.org/experiments/ENCSR475VQD/
***************
biological replicate number: 2
technical replicate number: 1,2
description: DNase-seq on 72 day old male human fetal brain tissue
experiment encode accession: ENCSR475VQD
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB113NKB

source_name: Homo sapiens brain tissue male fetal (76 days)

value: tissue

value: fetal

value: ENCBS980LUR at ENCODE; https://www.encodeproject.org/ENCBS980LUR/


title: DNase-seq from KBM-7 (ENCLB182IDD)

description:
https://www.encodeproject.org/experiments/ENCSR426IEA/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on cell line KBM-7 (human myeloid leukemia)
experiment encode accession: ENCSR426IEA
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB182IDD

source_name: Homo sapiens KBM-7 immortalized cell line

value: unknown

value: not collected

value: John Stamatoyannopoulos, UW

value: ENCBS815EDC at ENCODE; https://www.encodeproject.org/ENCBS815EDC/

value: Derived from ENCODE donor ENCDO763VKT; https://www.encodeproject.org/ENCDO763VKT/

value: ENCODE dbxrefs Cellosaurus CVCL_A426; http://web.expasy.org/cellosaurus/CVCL_A426


title: DNase-seq from KBM-7 (ENCLB152ORA)

description:
https://www.encodeproject.org/experiments/ENCSR426IEA/
***************
biological replicate number: 2
technical replicate number: 2
description: DNase-seq on cell line KBM-7 (human myeloid leukemia)
experiment encode accession: ENCSR426IEA
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB152ORA

value: immortalized cell line

value: ENCBS322FGS at ENCODE; https://www.encodeproject.org/ENCBS322FGS/


title: DNase-seq from KBM-7 (ENCLB211ORA)

description:
https://www.encodeproject.org/experiments/ENCSR426IEA/
***************
biological replicate number: 1
technical replicate number: 5
description: DNase-seq on cell line KBM-7 (human myeloid leukemia)
experiment encode accession: ENCSR426IEA
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB211ORA


title: DNase-seq from MM.1S (ENCLB793GPI)

description:
https://www.encodeproject.org/experiments/ENCSR458LIB/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR458LIB
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB793GPI
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens MM.1S immortalized cell line

value: adult

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS299YQN at ENCODE; https://www.encodeproject.org/ENCBS299YQN/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: DNase-seq from brain (ENCLB743EFP)

description:
https://www.encodeproject.org/experiments/ENCSR595CSH/
***************
biological replicate number: 2
technical replicate number: 2,1
description:
experiment encode accession: ENCSR595CSH
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB743EFP

source_name: Homo sapiens brain tissue fetal (56 days)

value: brain

value: tissue

value: fetal

value: 56 day

value: ENCBS539WGT at ENCODE; https://www.encodeproject.org/ENCBS539WGT/

value: Derived from ENCODE donor ENCDO708OLI; https://www.encodeproject.org/ENCDO708OLI/


title: genetic modification DNase-seq from K562 (ENCLB421KGA)

description:
https://www.encodeproject.org/experiments/ENCSR423UEH/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR423UEH
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB421KGA

value: 53 year

value: chronic myelogenous leukemia (CML)

value: John Stamatoyannopoulos, UW

value: ENCBS419NSL at ENCODE; https://www.encodeproject.org/ENCBS419NSL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: genetic modification DNase-seq from K562 (ENCLB209RDN)

description:
https://www.encodeproject.org/experiments/ENCSR560CCF/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR560CCF
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB209RDN

value: immortalized cell line

value: TALEN-mediated homozygous DHS deletion in K562.

value: adult

value: female

value: ENCBS405GDI at ENCODE; https://www.encodeproject.org/ENCBS405GDI/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB176WJQ)

description:
https://www.encodeproject.org/experiments/ENCSR420NOA/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR420NOA
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB176WJQ
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

value: primary cell

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: male

value: 25 year

value: ENCBS378UXT at ENCODE; https://www.encodeproject.org/ENCBS378UXT/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: DNase-seq from Caki2 (ENCLB384WEU)

description:
https://www.encodeproject.org/experiments/ENCSR515EWI/
***************
biological replicate number: 1
technical replicate number: 1,2
description: DNase-seq on cell line Caki-2 (epithelial cell from 69 year old male human kidney, clear cell carcinoma)
experiment encode accession: ENCSR515EWI
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB384WEU

value: 69 year

value: ENCBS768KGZ at ENCODE; https://www.encodeproject.org/ENCBS768KGZ/

value: Derived from ENCODE donor ENCDO140IFG; https://www.encodeproject.org/ENCDO140IFG/

value: ENCODE dbxrefs Cellosaurus CVCL_0235; http://web.expasy.org/cellosaurus/CVCL_0235


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB804LMP)

description:
https://www.encodeproject.org/experiments/ENCSR420NOA/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR420NOA
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB804LMP

value: John Stamatoyannopoulos, UW

value: ENCBS013CSB at ENCODE; https://www.encodeproject.org/ENCBS013CSB/


title: DNase-seq from adipocyte (ENCLB884YIS)

description:
https://www.encodeproject.org/experiments/ENCSR405TXU/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on human adipocyte
experiment encode accession: ENCSR405TXU
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB884YIS

source_name: Homo sapiens adipocyte in vitro differentiated cells

value: adipocyte

value: in vitro differentiated cells

value: unknown

value: not collected

value: ENCBS754GFE at ENCODE; https://www.encodeproject.org/ENCBS754GFE/

value: Derived from ENCODE donor ENCDO029QEV; https://www.encodeproject.org/ENCDO029QEV/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB749ALB)

description:
https://www.encodeproject.org/experiments/ENCSR362JSZ/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR362JSZ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB749ALB
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: primary cell

value: adult

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: ENCBS335BSM at ENCODE; https://www.encodeproject.org/ENCBS335BSM/


title: DNase-seq from adipocyte (ENCLB718CYF)

description:
https://www.encodeproject.org/experiments/ENCSR405TXU/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on human adipocyte
experiment encode accession: ENCSR405TXU
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB718CYF

value: ENCBS311PRF at ENCODE; https://www.encodeproject.org/ENCBS311PRF/


title: genetic modification DNase-seq from K562 (ENCLB159IRV)

description:
https://www.encodeproject.org/experiments/ENCSR374YBC/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562
experiment encode accession: ENCSR374YBC
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB159IRV
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: immortalized cell line

value: TALEN-mediated homozygous DHS deletion in K562.

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS402AEU at ENCODE; https://www.encodeproject.org/ENCBS402AEU/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB627AWD)

description:
https://www.encodeproject.org/experiments/ENCSR362JSZ/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR362JSZ
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB627AWD
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500,Illumina HiSeq 2500

value: male

value: 25 year

value: John Stamatoyannopoulos, UW

value: ENCBS448WOE at ENCODE; https://www.encodeproject.org/ENCBS448WOE/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: DNase-seq from KBM-7 (ENCLB484IPH)

description:
https://www.encodeproject.org/experiments/ENCSR426IEA/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on cell line KBM-7 (human myeloid leukemia)
experiment encode accession: ENCSR426IEA
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB484IPH

value: unknown

value: not collected

value: ENCBS322FGS at ENCODE; https://www.encodeproject.org/ENCBS322FGS/

value: Derived from ENCODE donor ENCDO763VKT; https://www.encodeproject.org/ENCDO763VKT/

value: ENCODE dbxrefs Cellosaurus CVCL_A426; http://web.expasy.org/cellosaurus/CVCL_A426


title: DNase-seq from A673 (ENCLB729MKU)

description:
https://www.encodeproject.org/experiments/ENCSR346JWH/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on cell line A673 (polygonal cell from 15 year old female human muscle, Ewing's sarcoma)
experiment encode accession: ENCSR346JWH
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-03-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB729MKU
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens A673 immortalized cell line

value: immortalized cell line

value: 15 year

value: ENCBS790NPQ at ENCODE; https://www.encodeproject.org/ENCBS790NPQ/

value: Derived from ENCODE donor ENCDO027VXA; https://www.encodeproject.org/ENCDO027VXA/

value: ENCODE dbxrefs Cellosaurus CVCL_0080; http://web.expasy.org/cellosaurus/CVCL_0080


title: DNase-seq from MM.1S (ENCLB907QRX)

description:
https://www.encodeproject.org/experiments/ENCSR458LIB/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR458LIB
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB907QRX
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: adult

value: female

value: 42 year

value: immunoglobulin A lambda myeloma

value: ENCBS523NFL at ENCODE; https://www.encodeproject.org/ENCBS523NFL/

value: Derived from ENCODE donor ENCDO697GBW; https://www.encodeproject.org/ENCDO697GBW/

value: ENCODE dbxrefs Cellosaurus CVCL_8792; http://web.expasy.org/cellosaurus/CVCL_8792


title: DNase-seq from A673 (ENCLB408KJJ)

description:
https://www.encodeproject.org/experiments/ENCSR346JWH/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on cell line A673 (polygonal cell from 15 year old female human muscle, Ewing's sarcoma)
experiment encode accession: ENCSR346JWH
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-03-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB408KJJ
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: unknown

value: John Stamatoyannopoulos, UW

value: ENCBS304EKV at ENCODE; https://www.encodeproject.org/ENCBS304EKV/


title: DNase-seq from L1-S8 (ENCLB417RNB)

description:
https://www.encodeproject.org/experiments/ENCSR314EZY/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR314EZY
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-11
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB417RNB
instrument models: Illumina HiSeq 2000,Illumina NextSeq 500

source_name: Homo sapiens L1-S8 induced pluripotent stem cell line

value: induced pluripotent stem cell line

value: L1-S8 is a partially reprogrammed cell line generated from human bone marrow mononuclear cells (BMMCs) after prestimulation with early cytokines (TPO, FL, SCF, IL-3) and transduced with Sendai viruses expressing the four factors OCT4, SOX2, KLF4 and cMYC. It originated from a single colony manually picked and clonal expanded.

value: not collected

value: ENCBS259CUZ at ENCODE; https://www.encodeproject.org/ENCBS259CUZ/

value: Derived from ENCODE donor ENCDO315JDK; https://www.encodeproject.org/ENCDO315JDK/

value: ENCODE dbxrefs Cellosaurus CVCL_AV88; http://web.expasy.org/cellosaurus/CVCL_AV88


title: DNase-seq from Daoy (ENCLB821FPA)

description:
https://www.encodeproject.org/experiments/ENCSR346IHH/
***************
biological replicate number: 1
technical replicate number: 2,1
description: DNase-seq on cell line Daoy (polygonal cell from 4 year old male human cerebellum, desmoplastic cerebellar medulloblastoma)
experiment encode accession: ENCSR346IHH
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB821FPA

source_name: Homo sapiens Daoy immortalized cell line

value: Daoy

value: immortalized cell line

value: 4 year

value: child

value: male

value: ENCBS055ILX at ENCODE; https://www.encodeproject.org/ENCBS055ILX/

value: Derived from ENCODE donor ENCDO735HIP; https://www.encodeproject.org/ENCDO735HIP/

value: ENCODE dbxrefs Cellosaurus CVCL_1167; http://web.expasy.org/cellosaurus/CVCL_1167


title: DNase-seq from G401 (ENCLB098YSI)

description:
https://www.encodeproject.org/experiments/ENCSR269SIA/
***************
biological replicate number: 1
technical replicate number: 1,2
description:
experiment encode accession: ENCSR269SIA
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB098YSI

source_name: Homo sapiens G401 immortalized cell line

value: 3 month

value: ENCBS062JBT at ENCODE; https://www.encodeproject.org/ENCBS062JBT/

value: Derived from ENCODE donor ENCDO572LRN; https://www.encodeproject.org/ENCDO572LRN/

value: ENCODE dbxrefs Cellosaurus CVCL_0270; http://web.expasy.org/cellosaurus/CVCL_0270


title: DNase-seq from ACHN (ENCLB237XJJ)

description:
https://www.encodeproject.org/experiments/ENCSR257BGZ/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on cell line ACHN (epithelial cell from 22 year old male human kidney, renal cell adenocarcinoma)
experiment encode accession: ENCSR257BGZ
assay title: DNase-seq
assembly: GRCh38
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB237XJJ
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens ACHN immortalized cell line

value: ACHN

value: adult

value: 22 year

value: John Stamatoyannopoulos, UW

value: ENCBS897ZFQ at ENCODE; https://www.encodeproject.org/ENCBS897ZFQ/

value: Derived from ENCODE donor ENCDO627NDO; https://www.encodeproject.org/ENCDO627NDO/

value: ENCODE dbxrefs Cellosaurus CVCL_1067; http://web.expasy.org/cellosaurus/CVCL_1067


title: DNase-seq from ELR (ENCLB594TJW)

description:
https://www.encodeproject.org/experiments/ENCSR240TPI/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on cell line BJ (foreskin fibroblasts from a newborn human male).
experiment encode accession: ENCSR240TPI
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-10-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB594TJW

source_name: Homo sapiens ELR immortalized cell line

value: ELR

value: immortalized cell line

value: ELR (BJ-hTert-SV40-H-RasV12)

value: newborn

value: unknown

value: normal

value: ENCBS170GUW at ENCODE; https://www.encodeproject.org/ENCBS170GUW/

value: Derived from ENCODE donor ENCDO000AAG; https://www.encodeproject.org/ENCDO000AAG/

value: ENCODE dbxrefs Cellosaurus CVCL_3653; http://web.expasy.org/cellosaurus/CVCL_3653


title: genetic modification DNase-seq from K562 (ENCLB337LMY)

description:
https://www.encodeproject.org/experiments/ENCSR229PFU/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated heterozygous DHS deletion in K562.
experiment encode accession: ENCSR229PFU
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-07-20
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB337LMY
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS357GME at ENCODE; https://www.encodeproject.org/ENCBS357GME/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from NCI-H226 (ENCLB438KFJ)

description:
https://www.encodeproject.org/experiments/ENCSR265TEK/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR265TEK
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-11-05
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB438KFJ
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens NCI-H226 immortalized cell line

value: male

value: John Stamatoyannopoulos, UW

value: ENCBS328RVB at ENCODE; https://www.encodeproject.org/ENCBS328RVB/

value: Derived from ENCODE donor ENCDO337XRW; https://www.encodeproject.org/ENCDO337XRW/

value: ENCODE dbxrefs Cellosaurus CVCL_1544; http://web.expasy.org/cellosaurus/CVCL_1544


title: genetic modification DNase-seq from K562 (ENCLB919PGI)

description:
https://www.encodeproject.org/experiments/ENCSR167DFU/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR167DFU
assay title: genetic modification DNase-seq
assembly: GRCh38
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB919PGI

source_name: Homo sapiens K562 immortalized cell line genetically modified (deletion) using TALEs

value: immortalized cell line

value: adult

value: ENCBS504EOJ at ENCODE; https://www.encodeproject.org/ENCBS504EOJ/


title: DNase-seq from Daoy (ENCLB717TLA)

description:
https://www.encodeproject.org/experiments/ENCSR346IHH/
***************
biological replicate number: 2
technical replicate number: 2,1
description: DNase-seq on cell line Daoy (polygonal cell from 4 year old male human cerebellum, desmoplastic cerebellar medulloblastoma)
experiment encode accession: ENCSR346IHH
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB717TLA

value: Daoy

value: 4 year

value: child

value: ENCBS812KQP at ENCODE; https://www.encodeproject.org/ENCBS812KQP/

value: Derived from ENCODE donor ENCDO735HIP; https://www.encodeproject.org/ENCDO735HIP/

value: ENCODE dbxrefs Cellosaurus CVCL_1167; http://web.expasy.org/cellosaurus/CVCL_1167


title: genetic modification DNase-seq from K562 (ENCLB080CZC)

description:
https://www.encodeproject.org/experiments/ENCSR165BGV/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR165BGV
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-11-02
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB080CZC

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS873YKY at ENCODE; https://www.encodeproject.org/ENCBS873YKY/


title: DNase-seq from amniotic stem cell (ENCLB244BOD)

description:
https://www.encodeproject.org/experiments/ENCSR207TUX/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR207TUX
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2016-05-09
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB244BOD
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

source_name: Homo sapiens amniotic stem cell male fetal (15 weeks)

value: amniotic stem cell

value: stem cell

value: fetal

value: male

value: 15 week

value: John Stamatoyannopoulos, UW

value: ENCBS431HXX at ENCODE; https://www.encodeproject.org/ENCBS431HXX/

value: Derived from ENCODE donor ENCDO942PSS; https://www.encodeproject.org/ENCDO942PSS/


title: DNase-seq from ELR (ENCLB894JER)

description:
https://www.encodeproject.org/experiments/ENCSR240TPI/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on cell line BJ (foreskin fibroblasts from a newborn human male).
experiment encode accession: ENCSR240TPI
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-10-14
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB894JER

value: ELR

value: immortalized cell line

value: ELR (BJ-hTert-SV40-H-RasV12)

value: newborn

value: unknown

value: normal

value: ENCBS935PZD at ENCODE; https://www.encodeproject.org/ENCBS935PZD/

value: Derived from ENCODE donor ENCDO000AAG; https://www.encodeproject.org/ENCDO000AAG/

value: ENCODE dbxrefs Cellosaurus CVCL_3653; http://web.expasy.org/cellosaurus/CVCL_3653


title: DNase-seq from HepG2 (ENCLB048DXW)

description:
https://www.encodeproject.org/experiments/ENCSR149XIL/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR149XIL
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB048DXW

source_name: Homo sapiens HepG2 immortalized cell line

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS048XFP at ENCODE; https://www.encodeproject.org/ENCBS048XFP/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB200PCY)

description:
https://www.encodeproject.org/experiments/ENCSR148VUP/
***************
biological replicate number: 1
technical replicate number: 1
description: DNase-seq on 25 year old human adult male hematopoietic multipotent progenitor cell line
experiment encode accession: ENCSR148VUP
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB200PCY

source_name: Homo sapiens hematopoietic multipotent progenitor primary cell male adult (25 years) treated with interleukin-3 , kit ligand , hydrocortisone succinate , erythropoietin

value: primary cell

value: Day 4 (T4)

value: adult

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: male

value: 25 year

value: John Stamatoyannopoulos, UW

value: ENCBS924ALK at ENCODE; https://www.encodeproject.org/ENCBS924ALK/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: DNase-seq from HepG2 (ENCLB029COU)

description:
https://www.encodeproject.org/experiments/ENCSR149XIL/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR149XIL
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-18
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB029COU

value: immortalized cell line

value: ENCBS800QIW at ENCODE; https://www.encodeproject.org/ENCBS800QIW/


title: genetic modification DNase-seq from K562 (ENCLB870RAD)

description:
https://www.encodeproject.org/experiments/ENCSR154AVE/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR154AVE
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB870RAD

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS709SOB at ENCODE; https://www.encodeproject.org/ENCBS709SOB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from eye (ENCLB979EBT)

description:
https://www.encodeproject.org/experiments/ENCSR127PWK/
***************
biological replicate number: 1
technical replicate number: 2,1
description: DNase-seq on 76 day old female human eye tissue
experiment encode accession: ENCSR127PWK
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB979EBT

source_name: Homo sapiens eye tissue female fetal (76 days)

value: eye

value: tissue

value: fetal

value: 76 day

value: ENCBS446ODB at ENCODE; https://www.encodeproject.org/ENCBS446ODB/

value: Derived from ENCODE donor ENCDO237NAG; https://www.encodeproject.org/ENCDO237NAG/


title: genetic modification DNase-seq from K562 (ENCLB032ZSK)

description:
https://www.encodeproject.org/experiments/ENCSR141VJJ/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR141VJJ
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB032ZSK

value: adult

value: John Stamatoyannopoulos, UW

value: ENCBS131FDE at ENCODE; https://www.encodeproject.org/ENCBS131FDE/


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB809AHE)

description:
https://www.encodeproject.org/experiments/ENCSR148VUP/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on 25 year old human adult male hematopoietic multipotent progenitor cell line
experiment encode accession: ENCSR148VUP
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB809AHE

value: primary cell

value: Day 4 (T4)

value: treatment_term_id:UniprotKB:P08700; treatment_term_name:interleukin-3; treatment_type:protein; treatment_term_id:UniprotKB:P21583; treatment_term_name:kit ligand; treatment_type:protein; treatment_term_id:CHEBI:31677; treatment_term_name:hydrocortisone succinate; treatment_type:chemical; treatment_term_id:CHEBI:81579; treatment_term_name:erythropoietin; treatment_type:chemical;

value: male

value: 25 year

value: ENCBS721DUI at ENCODE; https://www.encodeproject.org/ENCBS721DUI/

value: Derived from ENCODE donor ENCDO937OUY; https://www.encodeproject.org/ENCDO937OUY/


title: genetic modification DNase-seq from K562 (ENCLB765IMN)

description:
https://www.encodeproject.org/experiments/ENCSR101TGA/
***************
biological replicate number: 1
technical replicate number: 1
description: TALEN-mediated homozygous DHS deletion in K562.
experiment encode accession: ENCSR101TGA
assay title: genetic modification DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB765IMN

value: immortalized cell line

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS431YNM at ENCODE; https://www.encodeproject.org/ENCBS431YNM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: DNase-seq from hematopoietic multipotent progenitor cell (ENCLB185ALN)

description:
https://www.encodeproject.org/experiments/ENCSR098PTC/
***************
biological replicate number: 2
technical replicate number: 1
description:
experiment encode accession: ENCSR098PTC
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB185ALN
instrument models: Illumina HiSeq 2000,Illumina HiSeq 2500

value: Day 0 (T0)

value: adult

value: ENCBS107WLD at ENCODE; https://www.encodeproject.org/ENCBS107WLD/


title: DNase-seq from left kidney (ENCLB843WLM)

description:
https://www.encodeproject.org/experiments/ENCSR097BWW/
***************
biological replicate number: 1
technical replicate number: 1,2
description: DNase-seq on 91 day old male fetal human kidney tissue
experiment encode accession: ENCSR097BWW
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB843WLM

source_name: Homo sapiens left kidney tissue male fetal (91 day)

value: left kidney

value: tissue

value: fetal

value: 91 day

value: John Stamatoyannopoulos, UW

value: ENCBS999JGR at ENCODE; https://www.encodeproject.org/ENCBS999JGR/

value: Derived from ENCODE donor ENCDO245RIZ; https://www.encodeproject.org/ENCDO245RIZ/


title: DNase-seq from stomach (ENCLB845UBS)

description:
https://www.encodeproject.org/experiments/ENCSR095GWE/
***************
biological replicate number: 1
technical replicate number: 1
description:
experiment encode accession: ENCSR095GWE
assay title: DNase-seq
assembly: hg19, GRCh38
encode release date: 2016-09-22
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB845UBS

source_name: Homo sapiens stomach tissue male fetal (58 days)

value: stomach

value: male

value: 58 day

value: ENCBS868NIA at ENCODE; https://www.encodeproject.org/ENCBS868NIA/

value: Derived from ENCODE donor ENCDO652XOU; https://www.encodeproject.org/ENCDO652XOU/


title: DNase-seq from left kidney (ENCLB896SWH)

description:
https://www.encodeproject.org/experiments/ENCSR097BWW/
***************
biological replicate number: 2
technical replicate number: 1
description: DNase-seq on 91 day old male fetal human kidney tissue
experiment encode accession: ENCSR097BWW
assay title: DNase-seq
assembly: GRCh38, hg19
encode release date: 2015-08-31
lab: John Stamatoyannopoulos, UW
library encode accession: ENCLB896SWH

source_name: Homo sapiens left kidney tissue female fetal (59 days)

value: female

value: 59 day

value: ENCBS191BKL at ENCODE; https://www.encodeproject.org/ENCBS191BKL/

value: Derived from ENCODE donor ENCDO294EUZ; https://www.encodeproject.org/ENCDO294EUZ/