title: ChIP-seq from HEK293 (ENCLB022DDK)

description:
https://www.encodeproject.org/experiments/ENCSR760AAY/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-PRDM12 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR760AAY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB022DDK
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-PRDM12 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-PRDM12 under the control of a CMV promoter.

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS568ALT at ENCODE; https://www.encodeproject.org/ENCBS568ALT/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from HepG2 (ENCLB863CAF)

status: Public on Jan 04 2017

type: SRA

city: Stanford

first: ENCODE

last: DCC

state: CA

address: 300 Pasteur Dr

country: USA

institute: ENCODE DCC

description:
https://www.encodeproject.org/experiments/ENCSR755TJC/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against HNRNPUL1
experiment encode accession: ENCSR755TJC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR643JMB
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB863CAF
size range: 175-300

library_source: transcriptomic

data_processing: See GSM*_README.txt supplementary file linked below

molecule: total RNA

organism: Homo sapiens

source_name: Homo sapiens HepG2 immortalized cell line

extract_protocol:
pipeline protocol: https://www.encodeproject.org/documents/dde0b669-0909-4f8b-946d-3cb9f35a6c52/@@download/attachment/eCLIP_analysisSOP_v1.P.pdf
general protocol: https://www.encodeproject.org/documents/842f7424-5396-424a-a1a3-3f18707c3222/@@download/attachment/eCLIP_SOP_v1.P_110915.pdf
extraction method: see document

tag: antibody

tag: line

value: immortalized cell line

tag: biosample encode accession

tag: dev stage

value: child

tag: age

value: 15 year

tag: Sex

value: male

tag: passage number

tag: lab

value: Gene Yeo, UCSD

tag: health state

value: hepatocellular carcinoma

tag: link

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293T (ENCLB010JHQ)

description:
https://www.encodeproject.org/experiments/ENCSR753GIA/
***************
biological replicate number: 1
technical replicate number: 1
description: TARDBP ChIP-seq on human HEK293T
experiment encode accession: ENCSR753GIA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR386FAB
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB010JHQ
size range: 450-650

library_source: genomic

molecule: genomic DNA

source_name: Homo sapiens HEK293T immortalized cell line

value: TARDBP

value: female

value: ENCBS582KZL at ENCODE; https://www.encodeproject.org/ENCBS582KZL/


title: ChIP-seq from HEK293T (ENCLB370BLT)

description:
https://www.encodeproject.org/experiments/ENCSR753GIA/
***************
biological replicate number: 2
technical replicate number: 1
description: TARDBP ChIP-seq on human HEK293T
experiment encode accession: ENCSR753GIA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR386FAB
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB370BLT
size range: 450-650

value: embryonic

value: unknown

value: ENCBS276VDW at ENCODE; https://www.encodeproject.org/ENCBS276VDW/


title: eCLIP from HepG2 (ENCLB024KEJ)

description:
https://www.encodeproject.org/experiments/ENCSR746ZSV/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against LIN28B
experiment encode accession: ENCSR746ZSV
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB024KEJ
size range: 175-300

value: Control


title: ChIP-seq from HEK293 (ENCLB817WJN)

description:
https://www.encodeproject.org/experiments/ENCSR736BTL/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq on eGFP-SP2 tagged human HEK293 cells.
experiment encode accession: ENCSR736BTL
assay title: ChIP-seq
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB817WJN
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-SP2 fusion protein

value: immortalized cell line

tag: description

value: HEK293 cell line stably expressing N-terminal tagged eGFP-SP2 under the control of a CMV promoter.

value: Michael Snyder, Stanford

value: ENCBS974ABS at ENCODE; https://www.encodeproject.org/ENCBS974ABS/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from GM12878 (ENCLB890RUD)

description:
https://www.encodeproject.org/experiments/ENCSR739IHN/
***************
biological replicate number: 1
technical replicate number: 1
description: TBX21 ChIP-seq on human GM12878
experiment encode accession: ENCSR739IHN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB890RUD
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: adult

value: ENCBS389LEA at ENCODE; https://www.encodeproject.org/ENCBS389LEA/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526


title: eCLIP from HepG2 (ENCLB955BHY)

description:
https://www.encodeproject.org/experiments/ENCSR755TJC/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against HNRNPUL1
experiment encode accession: ENCSR755TJC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR643JMB
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB955BHY
size range: 175-300

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS548DJV at ENCODE; https://www.encodeproject.org/ENCBS548DJV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB593RRJ)

description:
https://www.encodeproject.org/experiments/ENCSR744GEU/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against IGF2BP1
experiment encode accession: ENCSR744GEU
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR205ZCE
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB593RRJ
size range: 175-300

extract_protocol:
pipeline protocol: https://www.encodeproject.org/documents/dde0b669-0909-4f8b-946d-3cb9f35a6c52/@@download/attachment/eCLIP_analysisSOP_v1.P.pdf
extraction method: see document
general protocol: https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf

value: immortalized cell line

value: ENCBS547JWV at ENCODE; https://www.encodeproject.org/ENCBS547JWV/


title: ChIP-seq from GM12878 (ENCLB106PKX)

description:
https://www.encodeproject.org/experiments/ENCSR739IHN/
***************
biological replicate number: 2
technical replicate number: 1
description: TBX21 ChIP-seq on human GM12878
experiment encode accession: ENCSR739IHN
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB106PKX
size range: 450-650

value: female

value: unknown

value: Michael Snyder, Stanford

value: ENCBS339VHO at ENCODE; https://www.encodeproject.org/ENCBS339VHO/


title: eCLIP from K562 (ENCLB823YVM)

description:
https://www.encodeproject.org/experiments/ENCSR736AAG/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against GTF2F1
experiment encode accession: ENCSR736AAG
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR157BRV
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB823YVM
size range: 175-300

source_name: Homo sapiens K562 immortalized cell line

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS831COV at ENCODE; https://www.encodeproject.org/ENCBS831COV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from HEK293 (ENCLB417TKQ)

description:
https://www.encodeproject.org/experiments/ENCSR760AAY/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-PRDM12 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR760AAY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB417TKQ
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-PRDM12 under the control of a CMV promoter.

value: embryonic

value: ENCBS395UVF at ENCODE; https://www.encodeproject.org/ENCBS395UVF/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from K562 (ENCLB146ZUI)

description:
https://www.encodeproject.org/experiments/ENCSR735MBZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against FMR1
experiment encode accession: ENCSR735MBZ
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB146ZUI
size range: 175-300

value: Control

value: Gene Yeo, UCSD

value: ENCBS885HUO at ENCODE; https://www.encodeproject.org/ENCBS885HUO/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from HepG2 (ENCLB352XAU)

description:
https://www.encodeproject.org/experiments/ENCSR841EQA/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against TAF15
experiment encode accession: ENCSR841EQA
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR708TCY
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB352XAU
size range: 175-300

value: immortalized cell line

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from MCF-7 (ENCLB568IYX)

description:
https://www.encodeproject.org/experiments/ENCSR729LGA/
***************
biological replicate number: 2
technical replicate number: 1
description: SP1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR729LGA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2016-09-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB568IYX
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: adult

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: Michael Snyder, Stanford

value: ENCBS200IWR at ENCODE; https://www.encodeproject.org/ENCBS200IWR/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: eCLIP from K562 (ENCLB513ZXE)

description:
https://www.encodeproject.org/experiments/ENCSR722LZB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against CSTF2T
experiment encode accession: ENCSR722LZB
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB513ZXE
size range: 175-300

value: Control

value: immortalized cell line

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Gene Yeo, UCSD

value: ENCBS126AJR at ENCODE; https://www.encodeproject.org/ENCBS126AJR/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB341QQP)

description:
https://www.encodeproject.org/experiments/ENCSR727UQK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-MAFG tagged K562 cell line.
experiment encode accession: ENCSR727UQK
assay title: ChIP-seq
encode release date: 2015-12-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB341QQP
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-MAFG fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to MAFG

value: Kevin White, UChicago

value: ENCBS683EBC at ENCODE; https://www.encodeproject.org/ENCBS683EBC/

value: ENCODE dbxrefs Cellosaurus CVCL_AW34; http://web.expasy.org/cellosaurus/CVCL_AW34


title: ChIP-seq from K562 (ENCLB882FCY)

description:
https://www.encodeproject.org/experiments/ENCSR715CCR/
***************
biological replicate number: 2
technical replicate number: 1
description: DPF2 ChIP-seq on human K562
experiment encode accession: ENCSR715CCR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-04-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB882FCY
size range: 450-650

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: female

value: ENCBS118YJZ at ENCODE; https://www.encodeproject.org/ENCBS118YJZ/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from HEK293 (ENCLB398ZRQ)

description:
https://www.encodeproject.org/experiments/ENCSR714LZQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF664 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR714LZQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB398ZRQ
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF664 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF664 under the control of a CMV promoter.

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS360VTQ at ENCODE; https://www.encodeproject.org/ENCBS360VTQ/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB708CTN)

description:
https://www.encodeproject.org/experiments/ENCSR715CCR/
***************
biological replicate number: 1
technical replicate number: 1
description: DPF2 ChIP-seq on human K562
experiment encode accession: ENCSR715CCR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-04-22
lab: Michael Snyder, Stanford
library encode accession: ENCLB708CTN
size range: 450-650

value: immortalized cell line

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS839CNN at ENCODE; https://www.encodeproject.org/ENCBS839CNN/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HEK293 (ENCLB726TEP)

description:
https://www.encodeproject.org/experiments/ENCSR732DAQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF788 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR732DAQ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-11-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB726TEP
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF788 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF788 under the control of a CMV promoter.

value: ENCBS139JQX at ENCODE; https://www.encodeproject.org/ENCBS139JQX/


title: ChIP-seq from HEK293 (ENCLB906EHV)

description:
https://www.encodeproject.org/experiments/ENCSR714LZQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF664 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR714LZQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB906EHV
size range: 450-650

value: ENCBS449AKC at ENCODE; https://www.encodeproject.org/ENCBS449AKC/


title: ChIP-seq from GM12878 (ENCLB866WMT)

description:
https://www.encodeproject.org/experiments/ENCSR711XNY/
***************
biological replicate number: 2
technical replicate number: 1
description: PKNOX1 ChIP-seq on human GM12878
experiment encode accession: ENCSR711XNY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB866WMT
size range: 450-650

value: adult

value: female

value: ENCBS263DSS at ENCODE; https://www.encodeproject.org/ENCBS263DSS/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: ChIP-seq from K562 (ENCLB693HUO)

description:
https://www.encodeproject.org/experiments/ENCSR709DHP/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-IRF9 tagged K562 cell line.
experiment encode accession: ENCSR709DHP
assay title: ChIP-seq
encode release date: 2015-12-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB693HUO
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-IRF9 fusion protein

value: Control

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to IRF9

value: Kevin White, UChicago

value: ENCBS134NRZ at ENCODE; https://www.encodeproject.org/ENCBS134NRZ/

value: ENCODE dbxrefs Cellosaurus CVCL_AW29; http://web.expasy.org/cellosaurus/CVCL_AW29


title: ChIP-seq from GM12878 (ENCLB176NNI)

description:
https://www.encodeproject.org/experiments/ENCSR711XNY/
***************
biological replicate number: 1
technical replicate number: 1
description: PKNOX1 ChIP-seq on human GM12878
experiment encode accession: ENCSR711XNY
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB176NNI
size range: 450-650

value: immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: Michael Snyder, Stanford

value: ENCBS803QIM at ENCODE; https://www.encodeproject.org/ENCBS803QIM/

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: ChIP-seq from HEK293 (ENCLB236RXV)

description:
https://www.encodeproject.org/experiments/ENCSR711UOA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF837 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR711UOA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB236RXV
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF837 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF837 under the control of a CMV promoter.

value: embryonic

value: ENCBS915UTY at ENCODE; https://www.encodeproject.org/ENCBS915UTY/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB108YCY)

description:
https://www.encodeproject.org/experiments/ENCSR711UOA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF837 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR711UOA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB108YCY
size range: 450-650

value: female

value: ENCBS927IRD at ENCODE; https://www.encodeproject.org/ENCBS927IRD/


title: eCLIP from K562 (ENCLB952QNS)

description:
https://www.encodeproject.org/experiments/ENCSR736AAG/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against GTF2F1
experiment encode accession: ENCSR736AAG
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR157BRV
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB952QNS
size range: 175-300

value: adult

value: 53 year

value: Gene Yeo, UCSD

value: chronic myelogenous leukemia (CML)

value: ENCBS931MQO at ENCODE; https://www.encodeproject.org/ENCBS931MQO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB076OZG)

description:
https://www.encodeproject.org/experiments/ENCSR708TCY/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against TAF15
experiment encode accession: ENCSR708TCY
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB076OZG
size range: 175-300

value: Control

value: immortalized cell line

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from HepG2 (ENCLB134DWM)

description:
https://www.encodeproject.org/experiments/ENCSR744GEU/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against IGF2BP1
experiment encode accession: ENCSR744GEU
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR205ZCE
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB134DWM
size range: 175-300

value: ENCBS537ADD at ENCODE; https://www.encodeproject.org/ENCBS537ADD/


title: eCLIP from HepG2 (ENCLB132HKY)

description:
https://www.encodeproject.org/experiments/ENCSR704LTK/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against FKBP4
experiment encode accession: ENCSR704LTK
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB132HKY
size range: 175-300

value: ENCBS035IIS at ENCODE; https://www.encodeproject.org/ENCBS035IIS/


title: ChIP-seq from HEK293 (ENCLB383ESH)

description:
https://www.encodeproject.org/experiments/ENCSR705ASR/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZSCAN23 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR705ASR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB383ESH
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZSCAN23 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZSCAN23 under the control of a CMV promoter.

value: embryonic

value: unknown

value: female

value: Michael Snyder, Stanford

value: ENCBS970UWN at ENCODE; https://www.encodeproject.org/ENCBS970UWN/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from MCF-7 (ENCLB257LYY)

description:
https://www.encodeproject.org/experiments/ENCSR701AQS/
***************
biological replicate number: 1
technical replicate number: 1
description: ZNF592 ChIP-seq on human MCF-7
experiment encode accession: ENCSR701AQS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB257LYY
size range: 450-650

value: immortalized cell line

value: adult

value: 69 year

value: breast cancer (adenocarcinoma)

value: ENCBS670IYV at ENCODE; https://www.encodeproject.org/ENCBS670IYV/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from HEK293 (ENCLB817RYQ)

description:
https://www.encodeproject.org/experiments/ENCSR705ASR/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZSCAN23 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR705ASR
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB817RYQ
size range: 450-650

value: ENCBS200HYZ at ENCODE; https://www.encodeproject.org/ENCBS200HYZ/


title: ChIP-seq from HEK293 (ENCLB024ZCQ)

description:
https://www.encodeproject.org/experiments/ENCSR707BNG/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-MYNN ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR707BNG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB024ZCQ
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-MYNN fusion protein

value: eGFP-MYNN

value: HEK293 cell line stably expressing N-terminal tagged eGFP-MYNN under the control of a CMV promoter.

value: ENCBS898VIL at ENCODE; https://www.encodeproject.org/ENCBS898VIL/


title: ChIP-seq from HEK293 (ENCLB968ICB)

description:
https://www.encodeproject.org/experiments/ENCSR707BNG/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-MYNN ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR707BNG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB968ICB
size range: 450-650

value: embryonic

value: ENCBS187WDU at ENCODE; https://www.encodeproject.org/ENCBS187WDU/


title: ChIP-seq from HEK293 (ENCLB777FMC)

description:
https://www.encodeproject.org/experiments/ENCSR732DAQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF788 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR732DAQ
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-11-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB777FMC
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF788 under the control of a CMV promoter.

value: unknown

value: female

value: ENCBS206BCE at ENCODE; https://www.encodeproject.org/ENCBS206BCE/


title: ChIP-seq from K562 (ENCLB106RCN)

description:
https://www.encodeproject.org/experiments/ENCSR724HDV/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-DIDO1 tagged K562 cell line.
experiment encode accession: ENCSR724HDV
assay title: ChIP-seq
encode release date: 2015-12-10
lab: Michael Snyder, Stanford
library encode accession: ENCLB106RCN
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-DIDO1 fusion protein

value: Control

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to DIDO1

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Kevin White, UChicago

value: ENCBS055YUW at ENCODE; https://www.encodeproject.org/ENCBS055YUW/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW18; http://web.expasy.org/cellosaurus/CVCL_AW18


title: ChIP-seq from MCF-7 (ENCLB358DLC)

description:
https://www.encodeproject.org/experiments/ENCSR701AQS/
***************
biological replicate number: 2
technical replicate number: 1
description: ZNF592 ChIP-seq on human MCF-7
experiment encode accession: ENCSR701AQS
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB358DLC
size range: 450-650

value: adult

value: 69 year

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS488MMM at ENCODE; https://www.encodeproject.org/ENCBS488MMM/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from MCF-7 (ENCLB637LZP)

description:
https://www.encodeproject.org/experiments/ENCSR729LGA/
***************
biological replicate number: 1
technical replicate number: 1
description: SP1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR729LGA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR217LRF
encode release date: 2016-09-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB637LZP
size range: 450-650

value: female

value: ENCBS609QTY at ENCODE; https://www.encodeproject.org/ENCBS609QTY/


title: ChIP-seq from MCF-7 (ENCLB713RQL)

description:
https://www.encodeproject.org/experiments/ENCSR697CUP/
***************
biological replicate number: 3
technical replicate number: 1
description: HCFC1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR697CUP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2016-02-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB713RQL
size range: 450-650

value: immortalized cell line

value: ENCBS616MBU at ENCODE; https://www.encodeproject.org/ENCBS616MBU/


title: ChIP-seq from MCF-7 (ENCLB510IZB)

description:
https://www.encodeproject.org/experiments/ENCSR697CUP/
***************
biological replicate number: 1
technical replicate number: 1
description: HCFC1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR697CUP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2016-02-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB510IZB
size range: 450-650

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: ENCBS168ISE at ENCODE; https://www.encodeproject.org/ENCBS168ISE/

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from HEK293 (ENCLB937WWI)

description:
https://www.encodeproject.org/experiments/ENCSR691TXI/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF610 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR691TXI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB937WWI
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF610 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF610 under the control of a CMV promoter.

value: embryonic

value: unknown

value: ENCBS494YKN at ENCODE; https://www.encodeproject.org/ENCBS494YKN/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB017RUH)

description:
https://www.encodeproject.org/experiments/ENCSR691TXI/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF610 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR691TXI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB017RUH
size range: 450-650

value: Michael Snyder, Stanford

value: ENCBS479SVO at ENCODE; https://www.encodeproject.org/ENCBS479SVO/


title: ChIP-seq from HEK293 (ENCLB233RVF)

description:
https://www.encodeproject.org/experiments/ENCSR689YFA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF146 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR689YFA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB233RVF
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF146 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF146 under the control of a CMV promoter.

value: ENCBS069ZWS at ENCODE; https://www.encodeproject.org/ENCBS069ZWS/


title: ChIP-seq from HEK293 (ENCLB581JXH) -2

description:
https://www.encodeproject.org/experiments/ENCSR274OGE/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq on eGFP-CTCF tagged human HEK293 cells.
experiment encode accession: ENCSR274OGE
assay title: ChIP-seq
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB581JXH
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-CTCF fusion protein

value: Control

value: HEK293 cell line stably expressing N-terminal tagged eGFP-CTCF under the control of a CMV promoter.

value: ENCBS454VNJ at ENCODE; https://www.encodeproject.org/ENCBS454VNJ/


title: ChIP-seq from HEK293 (ENCLB725JKA)

description:
https://www.encodeproject.org/experiments/ENCSR679WSJ/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq on eGFP-ZNF32 tagged human HEK293 cells.
experiment encode accession: ENCSR679WSJ
assay title: ChIP-seq
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB725JKA
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF32 fusion protein

value: immortalized cell line

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF32 under the control of a CMV promoter.

value: female

value: ENCBS349GQD at ENCODE; https://www.encodeproject.org/ENCBS349GQD/


title: ChIP-seq from HEK293 (ENCLB783PYO)

description:
https://www.encodeproject.org/experiments/ENCSR689YFA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF146 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR689YFA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB783PYO
size range: 450-650

value: ENCBS314JHW at ENCODE; https://www.encodeproject.org/ENCBS314JHW/


title: ChIP-seq from HEK293 (ENCLB234VXS)

description:
https://www.encodeproject.org/experiments/ENCSR157LMX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq on eGFP-ZEB2 tagged human HEK293 cells.
experiment encode accession: ENCSR157LMX
assay title: ChIP-seq
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB234VXS
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZEB2 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZEB2 under the control of a CMV promoter.

value: ENCBS768DUW at ENCODE; https://www.encodeproject.org/ENCBS768DUW/


title: eCLIP from K562 (ENCLB120SIT)

description:
https://www.encodeproject.org/experiments/ENCSR999WKT/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against DDX24
experiment encode accession: ENCSR999WKT
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR195IWB
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB120SIT
size range: 175-300

extract_protocol:
extraction method: see document
general protocol: https://www.encodeproject.org/documents/fa2a3246-6039-46ba-b960-17fe06e7876a/@@download/attachment/CLIP_SOP_v1.0.pdf

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Gene Yeo, UCSD

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB816ULS)

description:
https://www.encodeproject.org/experiments/ENCSR679STZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF792 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR679STZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-11-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB816ULS
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF792 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF792 under the control of a CMV promoter.

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS552GTN at ENCODE; https://www.encodeproject.org/ENCBS552GTN/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB009EFY)

description:
https://www.encodeproject.org/experiments/ENCSR679STZ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF792 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR679STZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-11-02
lab: Michael Snyder, Stanford
library encode accession: ENCLB009EFY
size range: 450-650

value: immortalized cell line

value: female

value: ENCBS636SBW at ENCODE; https://www.encodeproject.org/ENCBS636SBW/


title: ChIP-seq from K562 (ENCLB155HWK)

description:
https://www.encodeproject.org/experiments/ENCSR675LRO/
***************
biological replicate number: 2
technical replicate number: 1
description: MLLT1 ChIP-seq on human K562
experiment encode accession: ENCSR675LRO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB155HWK
size range: 450-650

value: adult

value: ENCBS850QNJ at ENCODE; https://www.encodeproject.org/ENCBS850QNJ/


title: ChIP-seq from HEK293T (ENCLB601WPB)

description:
https://www.encodeproject.org/experiments/ENCSR997GPO/
***************
biological replicate number: 1
technical replicate number: 1
description: NFRKB ChIP-seq on human HEK293T
experiment encode accession: ENCSR997GPO
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR272LXW
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB601WPB
size range: 450-650

source_name: Homo sapiens HEK293T immortalized cell line

value: NFRKB

value: ENCBS323RYE at ENCODE; https://www.encodeproject.org/ENCBS323RYE/


title: eCLIP from HepG2 (ENCLB860LDN)

description:
https://www.encodeproject.org/experiments/ENCSR993FMY/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against TROVE2
experiment encode accession: ENCSR993FMY
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR619LRH
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB860LDN
size range: 175-300

source_name: Homo sapiens HepG2 immortalized cell line

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS881CIF at ENCODE; https://www.encodeproject.org/ENCBS881CIF/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from K562 (ENCLB350DWH)

description:
https://www.encodeproject.org/experiments/ENCSR671GFC/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-TAF7 ChIP-seq on human K562
experiment encode accession: ENCSR671GFC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198KYG
encode release date: 2016-01-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB350DWH
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-TAF7 fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to TAF7

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Kevin White, UChicago

value: ENCBS360JZL at ENCODE; https://www.encodeproject.org/ENCBS360JZL/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW44; http://web.expasy.org/cellosaurus/CVCL_AW44


title: ChIP-seq from K562 (ENCLB704OAE)

description:
https://www.encodeproject.org/experiments/ENCSR671GFC/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-TAF7 ChIP-seq on human K562
experiment encode accession: ENCSR671GFC
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR198KYG
encode release date: 2016-01-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB704OAE
size range: 450-650

value: immortalized cell line

value: adult

value: female

value: ENCBS115OID at ENCODE; https://www.encodeproject.org/ENCBS115OID/


title: eCLIP from HepG2 (ENCLB903OGC)

description:
https://www.encodeproject.org/experiments/ENCSR993FMY/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against TROVE2
experiment encode accession: ENCSR993FMY
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR619LRH
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB903OGC
size range: 175-300

value: child

value: male

value: 15 year

value: ENCBS308ZPA at ENCODE; https://www.encodeproject.org/ENCBS308ZPA/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from HEK293 (ENCLB453PDK) -2

description:
https://www.encodeproject.org/experiments/ENCSR688NWK/
***************
biological replicate number: 1
technical replicate number: 1
description: Input ChIP-seq on eGFP-ZFP62 tagged human HEK293 cells.
experiment encode accession: ENCSR688NWK
assay title: ChIP-seq
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB453PDK
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZFP62 fusion protein

value: Control

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZFP62 under the control of a CMV promoter.

value: embryonic

value: unknown

value: Michael Snyder, Stanford

value: ENCBS584YDT at ENCODE; https://www.encodeproject.org/ENCBS584YDT/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from K562 (ENCLB940HZD)

description:
https://www.encodeproject.org/experiments/ENCSR968GIB/
***************
biological replicate number: 4
technical replicate number: 1
description: RFX1 ChIP-seq on human K562
experiment encode accession: ENCSR968GIB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB940HZD
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS719UQU at ENCODE; https://www.encodeproject.org/ENCBS719UQU/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from HepG2 (ENCLB617IRT)

description:
https://www.encodeproject.org/experiments/ENCSR670UPZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against SLTM
experiment encode accession: ENCSR670UPZ
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB617IRT
size range: 175-300

value: immortalized cell line

value: child

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS547JWV at ENCODE; https://www.encodeproject.org/ENCBS547JWV/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from K562 (ENCLB405GVM)

description:
https://www.encodeproject.org/experiments/ENCSR669DKA/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against HNRNPK
experiment encode accession: ENCSR669DKA
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB405GVM
size range: 175-300

value: Control

value: adult

value: female

value: ENCBS081NLE at ENCODE; https://www.encodeproject.org/ENCBS081NLE/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB412CSD)

description:
https://www.encodeproject.org/experiments/ENCSR968GIB/
***************
biological replicate number: 3
technical replicate number: 1
description: RFX1 ChIP-seq on human K562
experiment encode accession: ENCSR968GIB
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB412CSD
size range: 450-650

value: 53 year

value: Michael Snyder, Stanford

value: ENCBS697XFI at ENCODE; https://www.encodeproject.org/ENCBS697XFI/


title: eCLIP from HepG2 (ENCLB487MBF)

description:
https://www.encodeproject.org/experiments/ENCSR965DLL/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against SFPQ
experiment encode accession: ENCSR965DLL
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR506EIW
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB487MBF
size range: 175-300

value: SFPQ

value: 15 year

value: male

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/


title: ChIP-seq from K562 (ENCLB862KDB)

description:
https://www.encodeproject.org/experiments/ENCSR667RDX/
***************
biological replicate number: 1
technical replicate number: 1
description: Input control ChIP-seq on human eGFP-ETV1 tagged K562 cell line.
experiment encode accession: ENCSR667RDX
assay title: ChIP-seq
encode release date: 2016-02-18
lab: Michael Snyder, Stanford
library encode accession: ENCLB862KDB
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ETV1 fusion protein

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ETV1

value: chronic myelogenous leukemia (CML)

value: Kevin White, UChicago

value: ENCBS302KJF at ENCODE; https://www.encodeproject.org/ENCBS302KJF/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_AW20; http://web.expasy.org/cellosaurus/CVCL_AW20


title: eCLIP from HepG2 (ENCLB720JBU)

description:
https://www.encodeproject.org/experiments/ENCSR965DLL/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against SFPQ
experiment encode accession: ENCSR965DLL
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR506EIW
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB720JBU
size range: 175-300

value: child

value: hepatocellular carcinoma

value: Gene Yeo, UCSD

value: ENCBS308ZPA at ENCODE; https://www.encodeproject.org/ENCBS308ZPA/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HEK293 (ENCLB359TMF)

description:
https://www.encodeproject.org/experiments/ENCSR668HOP/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ZNF580 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR668HOP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB359TMF
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-ZNF580 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-ZNF580 under the control of a CMV promoter.

value: embryonic

value: unknown

value: female

value: Michael Snyder, Stanford

value: ENCBS811AFW at ENCODE; https://www.encodeproject.org/ENCBS811AFW/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from HEK293 (ENCLB872GDP)

description:
https://www.encodeproject.org/experiments/ENCSR668HOP/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ZNF580 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR668HOP
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB872GDP
size range: 450-650

value: immortalized cell line

value: ENCBS507LXF at ENCODE; https://www.encodeproject.org/ENCBS507LXF/


title: ChIP-seq from GM12878 (ENCLB159NTM)

description:
https://www.encodeproject.org/experiments/ENCSR956WYO/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human GM12878
experiment encode accession: ENCSR956WYO
assay title: ChIP-seq
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB159NTM
size range: 450-650

source_name: Homo sapiens GM12878 immortalized cell line

value: Control

value: adult

value: ENCBS263DSS at ENCODE; https://www.encodeproject.org/ENCBS263DSS/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/


title: ChIP-seq from GM12878 (ENCLB054PCI)

description:
https://www.encodeproject.org/experiments/ENCSR956WYO/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human GM12878
experiment encode accession: ENCSR956WYO
assay title: ChIP-seq
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB054PCI
size range: 450-650

value: ENCBS607NAA at ENCODE; https://www.encodeproject.org/ENCBS607NAA/


title: ChIP-seq from K562 (ENCLB140WNS)

description:
https://www.encodeproject.org/experiments/ENCSR658AGP/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR658AGP
assay title: ChIP-seq
encode release date: 2016-11-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB140WNS
size range: 450-650

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS398HUM at ENCODE; https://www.encodeproject.org/ENCBS398HUM/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from HEK293T (ENCLB225TRA)

description:
https://www.encodeproject.org/experiments/ENCSR997GPO/
***************
biological replicate number: 2
technical replicate number: 1
description: NFRKB ChIP-seq on human HEK293T
experiment encode accession: ENCSR997GPO
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR272LXW
encode release date: 2016-11-17
lab: Michael Snyder, Stanford
library encode accession: ENCLB225TRA
size range: 450-650

value: NFRKB

value: embryonic

value: ENCBS276VDW at ENCODE; https://www.encodeproject.org/ENCBS276VDW/


title: ChIP-seq from MCF-7 (ENCLB292GVU)

description:
https://www.encodeproject.org/experiments/ENCSR663ZZZ/
***************
biological replicate number: 2
technical replicate number: 1
description: MNT ChIP-seq on human MCF-7
experiment encode accession: ENCSR663ZZZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB292GVU
size range: 450-650

source_name: Homo sapiens MCF-7 immortalized cell line

value: MNT

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: 69 year

value: female

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS536NWC at ENCODE; https://www.encodeproject.org/ENCBS536NWC/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from K562 (ENCLB314WBY)

description:
https://www.encodeproject.org/experiments/ENCSR675LRO/
***************
biological replicate number: 1
technical replicate number: 1
description: MLLT1 ChIP-seq on human K562
experiment encode accession: ENCSR675LRO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB314WBY
size range: 450-650

value: immortalized cell line

value: adult

value: 53 year

value: ENCBS697XFI at ENCODE; https://www.encodeproject.org/ENCBS697XFI/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB066PQJ)

description:
https://www.encodeproject.org/experiments/ENCSR658AGP/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human K562
experiment encode accession: ENCSR658AGP
assay title: ChIP-seq
encode release date: 2016-11-01
lab: Michael Snyder, Stanford
library encode accession: ENCLB066PQJ
size range: 450-650

value: Control

value: chronic myelogenous leukemia (CML)

value: ENCBS783WYV at ENCODE; https://www.encodeproject.org/ENCBS783WYV/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: eCLIP from K562 (ENCLB649CET)

description:
https://www.encodeproject.org/experiments/ENCSR999WKT/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against DDX24
experiment encode accession: ENCSR999WKT
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR195IWB
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB649CET
size range: 175-300

value: Gene Yeo, UCSD

value: ENCBS318IMK at ENCODE; https://www.encodeproject.org/ENCBS318IMK/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from MCF-7 (ENCLB933KAP)

description:
https://www.encodeproject.org/experiments/ENCSR663ZZZ/
***************
biological replicate number: 1
technical replicate number: 1
description: MNT ChIP-seq on human MCF-7
experiment encode accession: ENCSR663ZZZ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB933KAP
size range: 450-650

value: MNT

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: female

value: 69 year

value: breast cancer (adenocarcinoma)

value: Michael Snyder, Stanford

value: ENCBS216AOQ at ENCODE; https://www.encodeproject.org/ENCBS216AOQ/


title: eCLIP from K562 (ENCLB384BYR)

description:
https://www.encodeproject.org/experiments/ENCSR927XDB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against MTPAP
experiment encode accession: ENCSR927XDB
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB384BYR
size range: 175-300

value: immortalized cell line

value: adult

value: 53 year

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/


title: eCLIP from K562 (ENCLB734SRL)

description:
https://www.encodeproject.org/experiments/ENCSR923NKN/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against DDX55
experiment encode accession: ENCSR923NKN
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR180EJY
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB734SRL
size range: 175-300

value: chronic myelogenous leukemia (CML)

value: ENCBS505ILK at ENCODE; https://www.encodeproject.org/ENCBS505ILK/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from K562 (ENCLB310FRS)

description:
https://www.encodeproject.org/experiments/ENCSR923NKN/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against DDX55
experiment encode accession: ENCSR923NKN
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR180EJY
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB310FRS
size range: 175-300

value: Gene Yeo, UCSD

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: eCLIP from K562 (ENCLB763BPI)

description:
https://www.encodeproject.org/experiments/ENCSR657TZB/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against XRN2
experiment encode accession: ENCSR657TZB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR170XQH
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB763BPI
size range: 175-300

value: ENCBS629DNR at ENCODE; https://www.encodeproject.org/ENCBS629DNR/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from HepG2 (ENCLB955VYX)

description:
https://www.encodeproject.org/experiments/ENCSR921SXC/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against XPO5
experiment encode accession: ENCSR921SXC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR583KVR
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB955VYX
size range: 175-300

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB034FDD)

description:
https://www.encodeproject.org/experiments/ENCSR921SXC/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against XPO5
experiment encode accession: ENCSR921SXC
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR583KVR
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB034FDD
size range: 175-300

value: immortalized cell line

value: ENCBS074YUC at ENCODE; https://www.encodeproject.org/ENCBS074YUC/


title: ChIP-seq from K562 (ENCLB364GTX)

description:
https://www.encodeproject.org/experiments/ENCSR657EOF/
***************
biological replicate number: 1
technical replicate number: 1
description: NFRKB ChIP-seq on human K562
experiment encode accession: ENCSR657EOF
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB364GTX
size range: 450-650

value: NFRKB

value: Leukemia, the continuous cell line K-562 was established by Lozzio and Lozzio from the pleural effusion of a 53-year-old female with chronic myelogenous leukemia in terminal blast crises. - ATCC

value: adult

value: 53 year

value: female

value: Michael Snyder, Stanford

value: chronic myelogenous leukemia (CML)

value: ENCBS953HJY at ENCODE; https://www.encodeproject.org/ENCBS953HJY/


title: eCLIP from K562 (ENCLB995NJQ)

description:
https://www.encodeproject.org/experiments/ENCSR657TZB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against XRN2
experiment encode accession: ENCSR657TZB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR170XQH
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB995NJQ
size range: 175-300

value: Gene Yeo, UCSD

value: ENCBS263GNB at ENCODE; https://www.encodeproject.org/ENCBS263GNB/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: eCLIP from HepG2 (ENCLB911LEI)

description:
https://www.encodeproject.org/experiments/ENCSR916SRV/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against TBRG4
experiment encode accession: ENCSR916SRV
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR081WUU
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB911LEI
size range: 175-300

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: eCLIP from HepG2 (ENCLB726MYI)

description:
https://www.encodeproject.org/experiments/ENCSR916SRV/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against TBRG4
experiment encode accession: ENCSR916SRV
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR081WUU
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB726MYI
size range: 175-300

value: immortalized cell line

value: ENCBS492SDY at ENCODE; https://www.encodeproject.org/ENCBS492SDY/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB681ILV)

description:
https://www.encodeproject.org/experiments/ENCSR910LAN/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against AGGF1
experiment encode accession: ENCSR910LAN
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB681ILV
size range: 175-300

value: Control

value: adult

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/


title: eCLIP from K562 (ENCLB394YRD)

description:
https://www.encodeproject.org/experiments/ENCSR653CNZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against TAF15
experiment encode accession: ENCSR653CNZ
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB394YRD
size range: 175-300

value: Gene Yeo, UCSD

value: ENCBS931MQO at ENCODE; https://www.encodeproject.org/ENCBS931MQO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from K562 (ENCLB359JXA)

description:
https://www.encodeproject.org/experiments/ENCSR651NUF/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against EIF4G2
experiment encode accession: ENCSR651NUF
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB359JXA
size range: 175-300

value: ENCBS533ETT at ENCODE; https://www.encodeproject.org/ENCBS533ETT/

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-243.aspx


title: ChIP-seq from K562 (ENCLB547SPX)

description:
https://www.encodeproject.org/experiments/ENCSR657EOF/
***************
biological replicate number: 2
technical replicate number: 1
description: NFRKB ChIP-seq on human K562
experiment encode accession: ENCSR657EOF
assay title: ChIP-seq
assembly: hg19, GRCh38
possible controls: ENCSR173USI, ENCSR554FDZ
encode release date: 2016-06-14
lab: Michael Snyder, Stanford
library encode accession: ENCLB547SPX
size range: 450-650

value: NFRKB

value: Michael Snyder, Stanford

value: ENCBS101QRF at ENCODE; https://www.encodeproject.org/ENCBS101QRF/


title: ChIP-seq from K562 (ENCLB309ZUD)

description:
https://www.encodeproject.org/experiments/ENCSR910JAI/
***************
biological replicate number: 1
technical replicate number: 1
description: NCOR1 ChIP-seq on human K562
experiment encode accession: ENCSR910JAI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB309ZUD
size range: 450-650

value: immortalized cell line

value: ENCBS727RLP at ENCODE; https://www.encodeproject.org/ENCBS727RLP/


title: ChIP-seq from K562 (ENCLB984CDI)

description:
https://www.encodeproject.org/experiments/ENCSR910JAI/
***************
biological replicate number: 2
technical replicate number: 1
description: NCOR1 ChIP-seq on human K562
experiment encode accession: ENCSR910JAI
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-11-30
lab: Michael Snyder, Stanford
library encode accession: ENCLB984CDI
size range: 450-650

value: ENCBS041GBQ at ENCODE; https://www.encodeproject.org/ENCBS041GBQ/


title: eCLIP from HepG2 (ENCLB822BHO)

description:
https://www.encodeproject.org/experiments/ENCSR655BRZ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against BCCIP
experiment encode accession: ENCSR655BRZ
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-07-15
lab: Gene Yeo, UCSD
library encode accession: ENCLB822BHO
size range: 175-300

value: Control

value: child

value: 15 year

value: male

value: hepatocellular carcinoma

value: ENCBS447JNO at ENCODE; https://www.encodeproject.org/ENCBS447JNO/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from K562 (ENCLB314IGB)

description:
https://www.encodeproject.org/experiments/ENCSR908CMW/
***************
biological replicate number: 1
technical replicate number: 1
description: KDM1A ChIP-seq on human K562
experiment encode accession: ENCSR908CMW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB314IGB
size range: 450-650

value: adult

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS357NWO at ENCODE; https://www.encodeproject.org/ENCBS357NWO/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/


title: ChIP-seq from K562 (ENCLB758UNH)

description:
https://www.encodeproject.org/experiments/ENCSR648INT/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-ILK ChIP-seq on human K562
experiment encode accession: ENCSR648INT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR489RLS
encode release date: 2016-02-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB758UNH
size range: 450-650

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-ILK fusion protein

value: eGFP-ILK

value: immortalized cell line

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to ILK

value: Kevin White, UChicago

value: ENCBS076AAA at ENCODE; https://www.encodeproject.org/ENCBS076AAA/

value: ENCODE dbxrefs Cellosaurus CVCL_AW27; http://web.expasy.org/cellosaurus/CVCL_AW27

value: ENCODE dbxrefs K562; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=K562


title: ChIP-seq from K562 (ENCLB428UIE)

description:
https://www.encodeproject.org/experiments/ENCSR647ZXA/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-MEF2D ChIP-seq on human K562
experiment encode accession: ENCSR647ZXA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR412HJH
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB428UIE

source_name: Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-MEF2D fusion protein

value: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to MEF2D

value: ENCBS902TFF at ENCODE; https://www.encodeproject.org/ENCBS902TFF/

value: ENCODE dbxrefs Cellosaurus CVCL_GZ89; http://web.expasy.org/cellosaurus/CVCL_GZ89


title: ChIP-seq from K562 (ENCLB107LBU)

description:
https://www.encodeproject.org/experiments/ENCSR648INT/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-ILK ChIP-seq on human K562
experiment encode accession: ENCSR648INT
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR489RLS
encode release date: 2016-02-16
lab: Michael Snyder, Stanford
library encode accession: ENCLB107LBU
size range: 450-650

value: ENCBS428AAA at ENCODE; https://www.encodeproject.org/ENCBS428AAA/


title: ChIP-seq from K562 (ENCLB115MXQ)

description:
https://www.encodeproject.org/experiments/ENCSR908CMW/
***************
biological replicate number: 2
technical replicate number: 1
description: KDM1A ChIP-seq on human K562
experiment encode accession: ENCSR908CMW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR632PAG
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB115MXQ
size range: 450-650

value: adult

value: Michael Snyder, Stanford

value: ENCBS352MRW at ENCODE; https://www.encodeproject.org/ENCBS352MRW/


title: ChIP-seq from K562 (ENCLB091OUX)

description:
https://www.encodeproject.org/experiments/ENCSR647ZXA/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-MEF2D ChIP-seq on human K562
experiment encode accession: ENCSR647ZXA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR412HJH
encode release date: 2016-08-24
lab: Michael Snyder, Stanford
library encode accession: ENCLB091OUX

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS163FHT at ENCODE; https://www.encodeproject.org/ENCBS163FHT/


title: eCLIP from HepG2 (ENCLB682ODL)

description:
https://www.encodeproject.org/experiments/ENCSR893NWB/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on HepG2 against GRWD1
experiment encode accession: ENCSR893NWB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR835ZOK
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB682ODL
size range: 175-300

value: immortalized cell line

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS492SDY at ENCODE; https://www.encodeproject.org/ENCBS492SDY/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from HepG2 (ENCLB493EED)

description:
https://www.encodeproject.org/experiments/ENCSR895TTM/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against SUGP2
experiment encode accession: ENCSR895TTM
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-08-19
lab: Gene Yeo, UCSD
library encode accession: ENCLB493EED
size range: 175-300

value: Control

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/


title: eCLIP from HepG2 (ENCLB399QCM)

description:
https://www.encodeproject.org/experiments/ENCSR893NWB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on HepG2 against GRWD1
experiment encode accession: ENCSR893NWB
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR835ZOK
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB399QCM
size range: 175-300


title: eCLIP from K562 (ENCLB485CXA)

description:
https://www.encodeproject.org/experiments/ENCSR921SHJ/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against NCBP2
experiment encode accession: ENCSR921SHJ
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB485CXA
size range: 175-300

value: adult

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: eCLIP from K562 (ENCLB661HKM)

description:
https://www.encodeproject.org/experiments/ENCSR893EFU/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against DDX6
experiment encode accession: ENCSR893EFU
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR207DWI
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB661HKM
size range: 175-300

value: 53 year

value: female

value: chronic myelogenous leukemia (CML)

value: ENCBS505ILK at ENCODE; https://www.encodeproject.org/ENCBS505ILK/


title: ChIP-seq from K562 (ENCLB242HBT)

description:
https://www.encodeproject.org/experiments/ENCSR643VTW/
***************
biological replicate number: 2
technical replicate number: 1
description: SMARCA4 ChIP-seq on human K562
experiment encode accession: ENCSR643VTW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB242HBT
size range: 450-650

value: immortalized cell line

value: Michael Snyder, Stanford

value: ENCBS719UQU at ENCODE; https://www.encodeproject.org/ENCBS719UQU/


title: eCLIP from HepG2 (ENCLB477PPQ)

description:
https://www.encodeproject.org/experiments/ENCSR643JMB/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against HNRNPUL1
experiment encode accession: ENCSR643JMB
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2015-11-09
lab: Gene Yeo, UCSD
library encode accession: ENCLB477PPQ
size range: 175-300

value: child

value: 15 year

value: male

value: Gene Yeo, UCSD

value: hepatocellular carcinoma

value: ENCBS362ASG at ENCODE; https://www.encodeproject.org/ENCBS362ASG/


title: eCLIP from K562 (ENCLB109LMQ)

description:
https://www.encodeproject.org/experiments/ENCSR893EFU/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against DDX6
experiment encode accession: ENCSR893EFU
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR207DWI
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB109LMQ
size range: 175-300

value: adult

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: eCLIP from K562 (ENCLB599OBX)

description:
https://www.encodeproject.org/experiments/ENCSR888YTT/
***************
biological replicate number: 2
technical replicate number: 1
description: eCLIP experiment on K562 against LARP4
experiment encode accession: ENCSR888YTT
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR679NKE
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB599OBX
size range: 175-300

value: ENCBS517UIR at ENCODE; https://www.encodeproject.org/ENCBS517UIR/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004


title: ChIP-seq from K562 (ENCLB019JZA)

description:
https://www.encodeproject.org/experiments/ENCSR643VTW/
***************
biological replicate number: 1
technical replicate number: 1
description: SMARCA4 ChIP-seq on human K562
experiment encode accession: ENCSR643VTW
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR173USI
encode release date: 2016-10-31
lab: Michael Snyder, Stanford
library encode accession: ENCLB019JZA
size range: 450-650

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: ENCBS125ACM at ENCODE; https://www.encodeproject.org/ENCBS125ACM/


title: ChIP-seq from MCF-7 (ENCLB861VCR)

description:
https://www.encodeproject.org/experiments/ENCSR882IYK/
***************
biological replicate number: 1
technical replicate number: 1
description: ChIP-seq on human MCF-7
experiment encode accession: ENCSR882IYK
assay title: ChIP-seq
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB861VCR
size range: 450-650

value: Control

value: immortalized cell line

value: 69 year

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS773JGQ at ENCODE; https://www.encodeproject.org/ENCBS773JGQ/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/


title: ChIP-seq from MCF-7 (ENCLB527VMP)

description:
https://www.encodeproject.org/experiments/ENCSR882IYK/
***************
biological replicate number: 2
technical replicate number: 1
description: ChIP-seq on human MCF-7
experiment encode accession: ENCSR882IYK
assay title: ChIP-seq
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB527VMP
size range: 450-650

value: adult

value: ENCBS764AUT at ENCODE; https://www.encodeproject.org/ENCBS764AUT/


title: siRNA RNA-seq from K562 (ENCLB160KRA)

description:
https://www.encodeproject.org/experiments/ENCSR644GSV/
***************
biological replicate number: 1
technical replicate number: 1
description: Control siRNA against no target in K562 cells followed by RNA-seq.
experiment encode accession: ENCSR644GSV
assay title: siRNA RNA-seq
assembly: GRCh38
encode release date: 2016-10-11
lab: Michael Snyder, Stanford
library encode accession: ENCLB160KRA
size range: >200
spikeins used: /references/ENCSR866KGS/

source_name: Homo sapiens K562 immortalized cell line transiently expressing siRNA targeting Non-specific target control

value: K562 cells treated with siRNA knockdown using a human non-targeting control.

value: Sherman Weissman, Yale

value: ENCBS196KVZ at ENCODE; https://www.encodeproject.org/ENCBS196KVZ/


title: ChIP-seq from GM12878 (ENCLB183GRG)

description:
https://www.encodeproject.org/experiments/ENCSR637QAM/
***************
biological replicate number: 2
technical replicate number: 1
description: TRIM22 ChIP-seq on human GM12878
experiment encode accession: ENCSR637QAM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB183GRG
size range: 450-650

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: ENCBS260WJQ at ENCODE; https://www.encodeproject.org/ENCBS260WJQ/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: eCLIP from K562 (ENCLB071NBO)

description:
https://www.encodeproject.org/experiments/ENCSR888YTT/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP experiment on K562 against LARP4
experiment encode accession: ENCSR888YTT
assay title: eCLIP
assembly: GRCh38, hg19
possible controls: ENCSR679NKE
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB071NBO
size range: 175-300

value: immortalized cell line

value: female

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Gene Yeo, UCSD

value: ENCBS318IMK at ENCODE; https://www.encodeproject.org/ENCBS318IMK/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from MCF-7 (ENCLB915DZM)

description:
https://www.encodeproject.org/experiments/ENCSR636EYA/
***************
biological replicate number: 2
technical replicate number: 1
description: CTBP1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR636EYA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2016-04-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB915DZM
size range: 450-650

value: Mammary gland, adenocarcinoma. (PMID:4357757)

value: adult

value: 69 year

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS536NWC at ENCODE; https://www.encodeproject.org/ENCBS536NWC/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031

value: ATCC sample source; http://www.atcc.org/Products/All/HTB-22.aspx


title: ChIP-seq from GM12878 (ENCLB635OIQ)

description:
https://www.encodeproject.org/experiments/ENCSR637QAM/
***************
biological replicate number: 1
technical replicate number: 1
description: TRIM22 ChIP-seq on human GM12878
experiment encode accession: ENCSR637QAM
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR398JTO
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB635OIQ
size range: 450-650

value: immortalized cell line

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: unknown

value: female

value: ENCBS802GDX at ENCODE; https://www.encodeproject.org/ENCBS802GDX/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166


title: ChIP-seq from HEK293 (ENCLB814MFV)

description:
https://www.encodeproject.org/experiments/ENCSR635NOQ/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-KLF8 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR635NOQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB814MFV
size range: 450-650

source_name: Homo sapiens HEK293 immortalized cell line derived from HEK293 stably expressing N-terminal eGFP-KLF8 fusion protein

value: HEK293 cell line stably expressing N-terminal tagged eGFP-KLF8 under the control of a CMV promoter.

value: embryonic

value: ENCBS960DYO at ENCODE; https://www.encodeproject.org/ENCBS960DYO/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: eCLIP from K562 (ENCLB912EAK)

description:
https://www.encodeproject.org/experiments/ENCSR881RJL/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on K562 against RPS11
experiment encode accession: ENCSR881RJL
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB912EAK
size range: 175-300

value: Control

value: adult

value: 53 year

value: chronic myelogenous leukemia (CML)

value: Gene Yeo, UCSD

value: ENCBS175JIH at ENCODE; https://www.encodeproject.org/ENCBS175JIH/

value: Derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/

value: ENCODE dbxrefs Cellosaurus CVCL_0004; http://web.expasy.org/cellosaurus/CVCL_0004

value: ATCC sample source; http://www.atcc.org/Products/All/HB-8065.aspx


title: ChIP-seq from A549 (ENCLB258LYK)

description:
https://www.encodeproject.org/experiments/ENCSR638QYO/
***************
biological replicate number: 3
technical replicate number: 1
description: SREBF2 ChIP-seq on human A549
experiment encode accession: ENCSR638QYO
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR610YRT, ENCSR871XML
encode release date: 2014-07-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB258LYK
size range: 450-650

source_name: Homo sapiens A549 immortalized cell line

value: immortalized cell line

value: epithelial cell line derived from a 58 year old caucasian male lung carcinoma.

value: 58 year

value: male

value: Michael Snyder, Stanford

value: ENCBS848SUF at ENCODE; https://www.encodeproject.org/ENCBS848SUF/

value: Derived from ENCODE donor ENCDO000AAZ; https://www.encodeproject.org/ENCDO000AAZ/

value: ENCODE dbxrefs Cellosaurus CVCL_0023; http://web.expasy.org/cellosaurus/CVCL_0023

value: ATCC sample source; http://www.atcc.org/Products/All/CCL-185.aspx


title: eCLIP from HepG2 (ENCLB874TMH)

description:
https://www.encodeproject.org/experiments/ENCSR878HWU/
***************
biological replicate number: 1
technical replicate number: 1
description: eCLIP control experiment on HepG2 against EFTUD2
experiment encode accession: ENCSR878HWU
assay title: eCLIP
assembly: GRCh38, hg19
encode release date: 2016-04-26
lab: Gene Yeo, UCSD
library encode accession: ENCLB874TMH
size range: 175-300

value: Control

value: child

value: 15 year

value: hepatocellular carcinoma

value: ENCBS621TAB at ENCODE; https://www.encodeproject.org/ENCBS621TAB/

value: Derived from ENCODE donor ENCDO000AAC; https://www.encodeproject.org/ENCDO000AAC/

value: ENCODE dbxrefs Cellosaurus CVCL_0027; http://web.expasy.org/cellosaurus/CVCL_0027


title: ChIP-seq from HEK293 (ENCLB252ROJ)

description:
https://www.encodeproject.org/experiments/ENCSR635NOQ/
***************
biological replicate number: 2
technical replicate number: 1
description: eGFP-KLF8 ChIP-seq on human HEK293 cells.
experiment encode accession: ENCSR635NOQ
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR007GUS, ENCSR049NDP, ENCSR110ZVM, ENCSR123TVS, ENCSR236FPN, ENCSR260MAS, ENCSR278MZO, ENCSR311DYU, ENCSR316OQD, ENCSR361UQO, ENCSR398UVH, ENCSR468NLK, ENCSR499OOH, ENCSR499QIO, ENCSR523KUQ, ENCSR537CWQ, ENCSR603CJM, ENCSR679WSJ, ENCSR736BTL, ENCSR782QKO, ENCSR840JVQ, ENCSR851FFP, ENCSR860UAT, ENCSR873PPH
encode release date: 2016-10-07
lab: Michael Snyder, Stanford
library encode accession: ENCLB252ROJ
size range: 450-650

value: HEK293 cell line stably expressing N-terminal tagged eGFP-KLF8 under the control of a CMV promoter.

value: embryonic

value: female

value: unknown

value: ENCBS132UZL at ENCODE; https://www.encodeproject.org/ENCBS132UZL/

value: Derived from ENCODE donor ENCDO000ABF; https://www.encodeproject.org/ENCDO000ABF/


title: ChIP-seq from MCF-7 (ENCLB089GKC)

description:
https://www.encodeproject.org/experiments/ENCSR636EYA/
***************
biological replicate number: 1
technical replicate number: 1
description: CTBP1 ChIP-seq on human MCF-7
experiment encode accession: ENCSR636EYA
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR594UCI, ENCSR217LRF
encode release date: 2016-04-21
lab: Michael Snyder, Stanford
library encode accession: ENCLB089GKC
size range: 450-650

value: immortalized cell line

value: adult

value: 69 year

value: Michael Snyder, Stanford

value: breast cancer (adenocarcinoma)

value: ENCBS547AXB at ENCODE; https://www.encodeproject.org/ENCBS547AXB/

value: Derived from ENCODE donor ENCDO000AAE; https://www.encodeproject.org/ENCDO000AAE/

value: ENCODE dbxrefs Cellosaurus CVCL_0031; http://web.expasy.org/cellosaurus/CVCL_0031


title: ChIP-seq from GM12878 (ENCLB190HWI)

description:
https://www.encodeproject.org/experiments/ENCSR874AFU/
***************
biological replicate number: 2
technical replicate number: 1
description: IKZF1 ChIP-seq on human GM12878
experiment encode accession: ENCSR874AFU
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR956WYO
encode release date: 2016-09-20
lab: Michael Snyder, Stanford
library encode accession: ENCLB190HWI
size range: 450-650

value: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

value: ENCBS276RPG at ENCODE; https://www.encodeproject.org/ENCBS276RPG/

value: Derived from ENCODE donor ENCDO000AAK; https://www.encodeproject.org/ENCDO000AAK/

value: ENCODE dbxrefs Cellosaurus CVCL_7526; http://web.expasy.org/cellosaurus/CVCL_7526

value: Coriell sample source; http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM12878&PgId=166