title: VM replicate 1

status: Public on Apr 21 2017

city: Seattle

first: Sonali

last: Arora

state: WA

address: 1100 Fairview Ave N,

institute: FHCRC

description: VM replicate 1

data_processing:
Sequencing was performed using an Illumina HiSeq 2000 in Rapid Run mode and employed a single-end, 50 base read length (SE50) sequencing strategy.
RNA-seq reads were aligned to the UCSC hg19 assembly using Tophat2 and counted for gene associations against the UCSC genes database with HTSeq
All data was combined and normalized using a CPM method from the R/Bioconductor package, edgeR
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include cpm values for each Sample.

source_name: cell line

extract_protocol:
RNA was extracted from cell cultures every two weeks during the exponential growth phase; RNA was isolated from 0.5-1.0×106 cells. Total RNA was prepared using RNeasy Mini Kit with DNase I (Qiagen). RNA concentration and quality (A260/A280) was measured using a NanoDrop 1000 Spectrophotometer (Thermo Scientific)
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: cell line

value: VM

value: glioblastoma stem cell


title: NHA RAS replicate 3

type: SRA

country: USA

description: NHA RAS replicate 3

library_source: transcriptomic

molecule: total RNA

organism: Homo sapiens

value: NHA RAS

tag: cell type


title: NHA RAS replicate 2

description: NHA RAS replicate 2


title: VM replicate 3

description: VM replicate 3


title: NHA replicate 2

description: NHA replicate 2

value: NHA


title: NHA replicate 3

description: NHA replicate 3


title: G7 replicate 1

description: G7 replicate 1


title: NHA replicate 1

description: NHA replicate 1


title: G7 replicate 3

description: G7 replicate 3


title: G26 replicate 3

description: G26 replicate 3


title: G7 replicate 2

description: G7 replicate 2


title: neural GFP+ 2

status: Public on May 02 2017

type: RNA

city: Boston

first: Boston University

last: Microarray and Sequencing Resource

state: MA

address: 72 East Concord Street, E631

department: Microarray and Sequencing Resource

institute: Boston University

description:
23
Gene expression data from iPSC-derived forebrain-like neural NKX2-1GFP+ cells

hyb_protocol: The labeled, fragmented DNA was hybridized to the Human Gene 2.0 ST Array (Affymetrix, Santa Clara, CA) for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm). The hybridized samples were washed and stained using an Affymetrix fluidics station 450.

scan_protocol: After staining, microarrays were immediately scanned using an Affymetrix GeneArray Scanner 3000 7G Plus (Affymetrix, Santa Clara, CA).

data_processing: Raw Affymetrix CEL files were normalized to produce Entrez Gene-identifier-specific expression values using the implementation of the Robust Multiarray Average (RMA) in the affy package in the Bioconductor software suite (version 2.12), using R version 2.15.1 and the Brainarray hugene20sthsentrezg R package (version 17.0.0) (http://mbni.org/customcdf/17.0.0/entrezg.download/hugene20st_Hs_ENTREZG_17.0.0.zip).

label: biotin

label_protocol: Biotin labeling was performed using the Ambion WT Expression Kit (Life Technologies, Grand Island, NY) according to the manufacturer's protocol, followed by the GeneChip WT Terminal Labeling and Controls Kit (Affymetrix, Santa Clara, CA).

growth_protocol: iPSCs were transitioned to feeder-free conditions on Matrigel (Corning) in mTeSR1 (Stem Cell Technologies) and passaged with Gentle Cell Dissociation Reagent (Stem Cell Technologies). For the lung  differentiation we first induced definitive endoderm using STEMDiff definitive endoderm kit (STEMCELL Technologies) according to the accompanying protocol. After approximately 72 cells were plated in small clumps at approximately 150-200,000 cells/cm2  on Matrigel-coated plates in complete serum-free differentiation media (CSFDM) supplemented with 2μM Dorsomorphin (Stemgent), 10μM SB431542 (Tocris) for 72 hours. 10μM Y-27632 (Tocris) was added for the first 24 hours. The differentiation media was changed on day 6 to “CFKBRa”; CSFDM supplemented with 3μM CHIR99021 (Tocris), 10ng/ml rhFGF10, 10ng/ml rhKGF, 10ng/ml rhBMP4 (all from R&D Systems), 50-100nM Retinoic acid (Sigma). On day 15 cells were dissociated by incubating in 0.05% trypsin (ThermoFisher Scientific) at 37°C for 2-4 minutes, aspirating trypsin, washing once with DMEM (ThermoFisher Scientific)+10% FBS (ThermoFisher Scientific), resuspending as small clumps in CSFDM supplemented with 3uM CHIR99021, 10ng/ml rhFGF10 and 10ng/ml rhKGF (“CFK” media) and plated on freshly-coated Matrigel (Corning 354277) plates.  10μM Y-27632 was added to “CFK” media for the first 24 hours. On day 22 media was changed to “CFK+DCI”: “CFK” media plus 50nM dexamethasone (Sigma), 0.1mM 8-Bromoadenosine 3′,5′-cyclic monophosphate  (8-Br-cAMP) sodium salt (Sigma) and 0.1mM 3-Isobutyl-1-methylxanthine (IBMX) (Sigma). Neuroectodermal NKX2-1GFP+ cells were generated using STEMDdiff Neural Induction Medium (STEMCELL Technologies) according to the manufacturer’s protocol. On day 6 of differentiation, 2μM of purmorphamine (Stemgent) was added to the base media. NKX2-1+ cells were sorted on Day 12.

extract_protocol: RNA was extracted by first lysing cells in Qiazol (Qiagen) and subsequently using RNeasy Plus Minikit (Qiagen) according to the manufacturer’s protocol and without DNase treatment.

treatment_protocol: Not applicable

tag: group

value: neural GFP+


title: G21 replicate 2

description: G21 replicate 2


title: G21 replicate 1

description: G21 replicate 1


title: G26 replicate 2

description: G26 replicate 2


title: G19 replicate 2

description: G19 replicate 2


title: neural GFP+ 1

description:
22
Gene expression data from iPSC-derived forebrain-like neural NKX2-1GFP+ cells


title: NHA RAS replicate 1

description: NHA RAS replicate 1


title: G166 replicate 2

description: G166 replicate 2


title: G19 replicate 3

description: G19 replicate 3


title: G144 replicate 3

description: G144 replicate 3


title: G19 replicate 1

description: G19 replicate 1


title: G179 replicate 3

description: G179 replicate 3


title: G166 replicate 3

description: G166 replicate 3


title: G166 replicate 1

description: G166 replicate 1


title: G21 replicate 3

description: G21 replicate 3


title: G179 replicate 1

description: G179 replicate 1


title: G144 replicate 2

description: G144 replicate 2


title: CX replicate 1

description: CX replicate 1

value: CX


title: CX replicate 2

description: CX replicate 2


title: G26 replicate 1

description: G26 replicate 1


title: G179 replicate 2

description: G179 replicate 2


title: CB660 replicate 3

description: CB660 replicate 3


title: G144 replicate 1

description: G144 replicate 1


title: CB660 replicate 2

description: CB660 replicate 2


title: CB660 replicate 1

description: CB660 replicate 1


title: 559T replicate 3

description: 559T replicate 3


title: 559T replicate 2

description: 559T replicate 2


title: 578T replicate 2

description: 578T replicate 2


title: 578T replicate 1

description: 578T replicate 1


title: 559T replicate 1

description: 559T replicate 1


title: 464T replicate 3

description: 464T replicate 3


title: 448T replicate 2

description: 448T replicate 2


title: 448T replicate 3

description: 448T replicate 3


title: 308 replicate 1

description: 308 replicate 1


title: 1502 replicate 2

description: 1502 replicate 2


title: 1502 replicate 1

description: 1502 replicate 1


title: 777T replicate 2

description: 777T replicate 2


title: 448T replicate 1

description: 448T replicate 1


title: 777T replicate 1

description: 777T replicate 1


title: 308 replicate 2

description: 308 replicate 2


title: 1406 replicate 3

description: 1406 replicate 3


title: 1502 replicate 3

description: 1502 replicate 3


title: 1406 replicate 2

description: 1406 replicate 2


title: 1406 replicate 1

description: 1406 replicate 1


title: 1228 replicate 3

description: 1228 replicate 3


title: 1228 replicate 1

description: 1228 replicate 1


title: 0827 replicate 2

description: 0827 replicate 2


title: 777T replicate 3

description: 777T replicate 3


title: 0827 replicate 1

description: 0827 replicate 1


title: 1228 replicate 2

description: 1228 replicate 2


title: 022T replicate 3

description: 022T replicate 3


title: 0827 replicate 3

description: 0827 replicate 3


title: 0131 replicate 3

description: 0131 replicate 3


title: 022T replicate 2

description: 022T replicate 2


title: 025T replicate 1

description: 025T replicate 1


title: 022T replicate 1

description: 022T replicate 1


title: 0131 replicate 2

description: 0131 replicate 2


title: 0131 replicate 1

description: 0131 replicate 1


title: 464T replicate 1

description: 464T replicate 1


title: 025T replicate 3

description: 025T replicate 3


title: Subject B_subcutaneous_1000 nM dexamethasone

status: Public on Feb 12 2017

description:
B-S4
Gene expression data from subcutaneous adipose tissue explant treated with 1000 nM dexamethasone.

hyb_protocol: The labeled, fragmented DNA was hybridized to the GeneChip Human Gene 1.0 ST Array for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm).  The hybridized samples were washed and stained using an Affymetrix fluidics station 450.

scan_protocol: After staining, microarrays were immediately scanned using an Affymetrix GeneArray Scanner 3000 7G Plus.

data_processing: Raw Affymetrix CEL files were normalized to produce gene-level expression values using the implementation of the Robust Multiarray Average (RMA) in the affy Bioconductor package (version 1.36.1) and an Entrez Gene-specific probeset mapping (version 14.0.0) from the Molecular and Behavioral Neuroscience Institute (Brainarray) at the University of Michigan.  NOTE: RMA normalization was performed using additional samples, and so the gene expression values in this GEO record cannot be reproduced exactly from these samples alone.

source_name: subcutaneous_1000 nM dexamethasone

growth_protocol: organ culture protocol: 300-400 mg of minced adipose tissue fragments (5-10 mg) were placed in organ culture in 15 ml of Medium 199 with the treatments as previously described (Lee et al, Am J Physiol Endocrinol Metab. 2011 Mar;300(3):E571-80)

extract_protocol: Total RNA was isolated with Trizol reagent (Life Technologies, Carlsbad, CA), cleaned with RNeasy MiniElute Cleanup Kit (Qiagen, Germantown, MD).

treatment_protocol: Media (with same additions/treatments) was exchanged every other day and on the day prior to processing on d7.

tag: subject status

value: pooled, two subjects with BMI 41 (AA, F, 54 yrs) and 42.5 (H, F, 28 yrs)

tag: treatment

value: dexamethasone

tag: depot

value: subcutaneous

tag: concentration

tag: tissue

value: adipose tissue explant


title: Subject C_omentum_1 nM dexamethasone

description:
C-O2
Gene expression data from omental adipose tissue explant treated with 1 nM dexamethasone.

source_name: omentum_1 nM dexamethasone

value: pooled, two subjects with BMI 54 (H, F, 34 yrs) and 36 (H, F, 30 yrs)

value: omentum

value: 1 nM


title: Subject C_omentum_1000 nM dexamethasone

description:
C-O4
Gene expression data from omental adipose tissue explant treated with 1000 nM dexamethasone.

source_name: omentum_1000 nM dexamethasone


title: Subject B_omentum_10 nM dexamethasone

description:
B-O3
Gene expression data from omental adipose tissue explant treated with 10 nM dexamethasone.

source_name: omentum_10 nM dexamethasone

value: 10 nM


title: Subject B_subcutaneous_0 nM dexamethasone

description:
B-S1
Gene expression data from subcutaneous adipose tissue explant treated with 0 nM dexamethasone.

source_name: subcutaneous_0 nM dexamethasone

value: 0 nM


title: Subject C_subcutaneous_1000 nM dexamethasone

description:
C-S4
Gene expression data from subcutaneous adipose tissue explant treated with 1000 nM dexamethasone.


title: Subject B_subcutaneous_10 nM dexamethasone

description:
B-S3
Gene expression data from subcutaneous adipose tissue explant treated with 10 nM dexamethasone.

source_name: subcutaneous_10 nM dexamethasone


title: Subject C_subcutaneous_0 nM dexamethasone

description:
C-S1
Gene expression data from subcutaneous adipose tissue explant treated with 0 nM dexamethasone.


title: Subject C_omentum_10 nM dexamethasone

description:
C-O3
Gene expression data from omental adipose tissue explant treated with 10 nM dexamethasone.


title: Subject C_omentum_0 nM dexamethasone

description:
C-O1
Gene expression data from omental adipose tissue explant treated with 0 nM dexamethasone.

source_name: omentum_0 nM dexamethasone


title: Subject B_subcutaneous_1 nM dexamethasone

description:
B-S2
Gene expression data from subcutaneous adipose tissue explant treated with 1 nM dexamethasone.

source_name: subcutaneous_1 nM dexamethasone


title: Subject C_subcutaneous_10 nM dexamethasone

description:
C-S3
Gene expression data from subcutaneous adipose tissue explant treated with 10 nM dexamethasone.


title: Subject B_omentum_0 nM dexamethasone

description:
B-O1
Gene expression data from omental adipose tissue explant treated with 0 nM dexamethasone.


title: Subject B_omentum_1000 nM dexamethasone

description:
B-O4
Gene expression data from omental adipose tissue explant treated with 1000 nM dexamethasone.


title: Subject C_subcutaneous_1 nM dexamethasone

description:
C-S2
Gene expression data from subcutaneous adipose tissue explant treated with 1 nM dexamethasone.


title: Subject B_omentum_1 nM dexamethasone

description:
B-O2
Gene expression data from omental adipose tissue explant treated with 1 nM dexamethasone.


title: Subject A_subcutaneous_200 nM cortisol

description:
A-S5
Gene expression data from subcutaneous adipose tissue explant treated with 200 nM cortisol.

source_name: subcutaneous_200 nM cortisol

value: 48yrs, F, AA with BMI 54 (kg/m2)

value: cortisol


title: Subject A_subcutaneous_0 nM dexamethasone

description:
A-S1
Gene expression data from subcutaneous adipose tissue explant treated with 0 nM dexamethasone.


title: Subject A_subcutaneous_1 nM dexamethasone

description:
A-S2
Gene expression data from subcutaneous adipose tissue explant treated with 1 nM dexamethasone.


title: Subject A_subcutaneous_1000 nM dexamethasone

description:
A-S4
Gene expression data from subcutaneous adipose tissue explant treated with 1000 nM dexamethasone.


title: Subject A_omentum_200 nM cortisol

description:
A-O5
Gene expression data from omental adipose tissue explant treated with 200 nM cortisol.

source_name: omentum_200 nM cortisol


title: Subject A_omentum_1 nM dexamethasone

description:
A-O2
Gene expression data from omental adipose tissue explant treated with 1 nM dexamethasone.


title: JG-98 2

status: Public on Dec 19 2016

description: JG-98 B

hyb_protocol: The labeled, fragmented DNA was hybridized to the Mouse Gene 2.0 ST Array (Affymetrix, Santa Clara, CA) for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm). The hybridized samples were washed and stained using an Affymetrix fluidics station 450.

data_processing: Raw Affymetrix CEL files were normalized to produce Entrez Gene-identifier-specific expression values using the implementation of the Robust Multiarray Average (RMA) in the affy package in the Bioconductor software suite (version 2.12), using R version 2.15.1 and the Brainarray mogene20stmmentrezg R package (version 17.0.0) (http://mbni.org/customcdf/17.0.0/entrezg.download/mogene20st_Mm_ENTREZG_17.0.0.zip).

organism: Mus musculus

source_name: macrophages treated with JG-98

growth_protocol: Mouse bone marrow macrophages were isolated according to standard procedure.

extract_protocol: RNA was isolated using the QIAgen RNeasy kit.

treatment_protocol: 0.3 micromole JG-98 for 16 hours.

value: bone marrow derived macrophages

tag: treated with

value: 0.3 micromole of JG-98 for 16 hr


title: Subject A_omentum_0 nM dexamethasone

description:
A-O1
Gene expression data from omental adipose tissue explant treated with 0 nM dexamethasone.


title: JG-98 1

description: JG-98 A


title: JG-98 3

description: JG-98 C


title: Subject A_subcutaneous_10 nM dexamethasone

description:
A-S3
Gene expression data from subcutaneous adipose tissue explant treated with 10 nM dexamethasone.


title: Control 3

description: Control C

source_name: control macrophages

value: none (control)


title: Control 2

description: Control B


title: Subject A_omentum_1000 nM dexamethasone

description:
A-O4
Gene expression data from omental adipose tissue explant treated with 1000 nM dexamethasone.


title: Subject A_omentum_10 nM dexamethasone

description:
A-O3
Gene expression data from omental adipose tissue explant treated with 10 nM dexamethasone.


title: IFNγ+C9433 replicate 3

status: Public on Nov 01 2016

description: Gene expression from BMDMs treated with IFNγ+C9433.

hyb_protocol: The labeled, fragmented DNA was hybridized to the GeneChip Mouse Gene 2.0 ST Array (Affymetrix, Santa Clara, CA) for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm).  The hybridized samples were washed and stained using an Affymetrix fluidics station 450 with streptavidin-R-phycoerythrin (SAPE) and the signal was amplified using a biotinylated goat anti-streptavidin antibody followed by another SAPE staining (Hybridization, Washing and Staining Kit, Affymetrix, Santa Clara, CA).

data_processing: Raw Affymetrix CEL files were normalized to produce gene-level expression values using the implementation of the Robust Multiarray Average (RMA) in the affy Bioconductor package (version 1.36.1) and an Entrez Gene-specific probeset mapping (version 17.0.0) from the Molecular and Behavioral Neuroscience Institute (Brainarray) at the University of Michigan.

source_name: bone marrow derived macrophages (BMDM)

growth_protocol: BMDM macrophages from C57BL/6  mice were grown at 37C in complete media containing 10% LCCM in TC treated 6 well plates for 4 days with media change every 2 days.

extract_protocol: Total RNA was isolated using the RNeasy plus Mini Kit  according to the manufacturer's instructions.

treatment_protocol: BMDM were treated with 0.2U/ml IFNγ in presence and absence of 1uM CMLD009433(C9433) for 24hrs. After that cells were harvested in RLT plus lysis buffer.

tag: strain

value: bone marrow

value: macrophage


title: Gaa-/- 16 months replicate 3

status: Public on Oct 11 2016

description: Gene expression data from spinal cord samples of Gaa-/- mice at 16 months.

source_name: spinal cord tissue

growth_protocol: Mice were housed in an AAALAC-accredited facility with a 12:12 light/dark cycle and ad libitum access to chow and water. The Gaa-/- mouse (Taconic, Inc. Hudson, NY), was outbred to a 129SVE background and studied at two ages: adult (6-8-mo; n=4) and aged (12-16-mo; n=4) and compared to age-matched mice from the syngeneic background strain (129SVE),

extract_protocol: Trizol extraction of total RNA was performed according to the manufacturer's instructions.

treatment_protocol: Mice (n=4/group) were injected intraperitoneally (I.P.) with beuthansia. After the loss of the hind-limb withdrawal reflex, cervical spinal tissues (C3-C5) were harvested, placed into RNA Later and stored at -80°C.

tag: age

value: 16 months

tag: genotype

value: Gaa-/-


title: IFNγ+C9433 replicate 2


title: Control 1

description: Control A


title: Gaa+/+ 16 months replicate 3

description: Gene expression data from spinal cord samples of Gaa+/+ mice at 16 months.

value: Gaa+/+


title: Gaa+/+ 16 months replicate 4


title: IFNγ replicate 2

description: Gene expression from BMDMs treated with IFNγ.

value: IFNγ


title: Gaa-/- 16 months replicate 4


title: IFNγ+C9433 replicate 1


title: Gaa-/- 6 months replicate 4

description: Gene expression data from spinal cord samples of Gaa-/- mice at 6 months.

value: 6 months


title: Gaa-/- 16 months replicate 2


title: Gaa+/+ 16 months replicate 1


title: IFNγ replicate 3


title: Gaa+/+ 16 months replicate 2


title: IFNγ replicate 1


title: Gaa+/+ 6 months replicate 4

description: Gene expression data from spinal cord samples of Gaa+/+ mice at 6 months.


title: Gaa+/+ 6 months replicate 2


title: Gaa-/- 6 months replicate 2


title: Gaa-/- 16 months replicate 1


title: Gaa+/+ 6 months replicate 1


title: Patient 009, baseline

status: Public on Aug 26 2016

description: Baseline 9

hyb_protocol: The labeled, fragmented DNA was hybridized to the GeneChip Human Gene 1.0 ST Array (Affymetrix, Santa Clara, CA) for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm).  The hybridized samples were washed and stained using an Affymetrix fluidics station 450.

data_processing: Raw Affymetrix CEL files were normalized to produce gene-level expression values using the implementation of the Robust Multiarray Average (RMA) in the affy Bioconductor package (version 1.36.1) and an Entrez Gene-specific probeset mapping (version 14.0.0) from the Molecular and Behavioral Neuroscience Institute (Brainarray) at the University of Michigan.

source_name: PAH-SSc patient_baseline

extract_protocol: Whole blood samples collected before treatment with Tadalafil and 16 weeks post-treatment were collected using PaxGene Tubes. RNA samples were prepared from frozen whole blood samples using the QIAGEN Rneasy kit (QIAGEN, Valencia, CA). Sample integrity was verified using RNA 6000 Pico Assay RNA Chips and an Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

treatment_protocol: Each subject received Tadalafil at 40mg once daily dose.

tag: patient id

tag: patient condition

value: pulmonary arterial hypertension and scleroderma (PAH-SSc)

tag: timepoint

value: 0 weeks; baseline

tag: clinical outcome

value: negative

value: whole blood


title: Gaa-/- 6 months replicate 3


title: Gaa-/- 6 months replicate 1


title: Patient 010, 16 weeks tadalafil

description: 16-week 10

source_name: PAH-SSc patient_16 weeks tadalafil

value: after 16 weeks of tadalafil treatment

value: unchanged


title: Patient 009, 16 weeks tadalafil

description: 16-week 9


title: Patient 010, baseline

description: Baseline 10


title: Patient 008, baseline

description: Baseline 8

value: positive


title: Patient 007, baseline

description: Baseline 7


title: Patient 007, 16 weeks tadalafil

description: 16-week 7


title: Patient 006, baseline

description: Baseline 6


title: Patient 006, 16 weeks tadalafil

description: 16-week 6


title: Patient 004, 16 weeks tadalafil

description: 16-week 4


title: Patient 005, 16 weeks tadalafil

description: 16-week 5


title: Patient 008, 16 weeks tadalafil

description: 16-week 8


title: Patient 002, 16 weeks tadalafil

description: 16-week 2


title: Patient 005, baseline

description: Baseline 5


title: Patient 003, baseline

description: Baseline 3


title: Patient 002, baseline

description: Baseline 2


title: Patient 001, baseline

description: Baseline 1


title: Patient 003, 16 weeks tadalafil

description: 16-week 3


title: Patient 001, 16 weeks tadalafil

description: 16-week 1


title: Patient 004, baseline

description: Baseline 4


title: Gaa+/+ 6 months replicate 3


title: Subject 626, region Nucleus Accumbens

status: Public on Aug 19 2016

city: New York

first: Bin

last: Zhang

state: NY

address: 1470 Madison Avenue

department: Genetics and Genomic Sciences

institute: Icahn School of Medicine at Mount Sinai

data_processing: The raw microarray data was preprocessed using the robust multiarray Average (RMA) method function implemented in the R/Bioconductor package Affy (v1.44) using the default parameters, including quantile normalizion and log2 transformation. RMA normalization was performed separately for each brain region. For 17 brain regions profiled with both 133A and 133B arrays, 133A and 133B arrays were normalized separately and combined afterwards. Finally, the normalized gene expression data was corrected for covariates including sex, PMI (postmortem interval), pH and race using linear regression.

source_name: Nucleus Accumbens, 88 yr old female

extract_protocol: Total RNA was isolated from 50 mg tissue aliquots from brain tissue samples, amplified to cRNA, and biotin-labeled for analysis on the Affymetrix U133AB or U133 Plus 2.0 Human genome GeneChip at Gene Logic Inc. (Gaithersburg, MD, USA) using the TRIzol method and RNeasy columns according to protocols from Affymetrix (Santa Clara, CA, USA). The 28S/18S rRNA ratio of isolated RNA was assessed using a Bioanalyzer (Agilent Technologies, Palo Alto, CA, USA) Label – biotin label protocol => followed a protocol described in the Gene Logic GeneChip® Analysis Manual (Gaithersburg, USA).

tag: subject id

tag: Sex

value: female

tag: race

value: white

tag: postmortem interval minutes

tag: ph

tag: clinical dementia rating

tag: braak neurofibrillary tangle score

tag: neuropathological category

value: definite AD

tag: average neuritic plaque density

tag: sum of cerad rating scores in multiple brain regions

tag: sum of neurofibrillary tangles density in multiple brain regions

tag: brain region

value: Nucleus Accumbens

value: post-mortem brain


title: Subject 740, region Nucleus Accumbens

hyb_protocol: followed a protocol described in the Gene Logic GeneChip® Analysis Manual (Gaithersburg, USA).

source_name: Nucleus Accumbens, 102 yr old female

tag: age

tag: tissue


title: Subject 786, region Nucleus Accumbens

scan_protocol: followed a protocol described in the Gene Logic GeneChip® Analysis Manual (Gaithersburg, USA).

source_name: Nucleus Accumbens, 95 yr old female


title: Subject 692, region Nucleus Accumbens

source_name: Nucleus Accumbens, 96 yr old female

label_protocol: followed a protocol described in the Gene Logic GeneChip® Analysis Manual (Gaithersburg, USA).


title: Subject 364, region Nucleus Accumbens

source_name: Nucleus Accumbens, 84 yr old female


title: Subject 375, region Nucleus Accumbens

source_name: Nucleus Accumbens, 87 yr old female

value: black


title: Subject 488, region Nucleus Accumbens


title: Subject 571, region Nucleus Accumbens

source_name: Nucleus Accumbens, 89 yr old female


title: Subject 708, region Nucleus Accumbens

source_name: Nucleus Accumbens, 78 yr old female


title: Subject 870, region Nucleus Accumbens

source_name: Nucleus Accumbens, 85 yr old female


title: Subject 347, region Nucleus Accumbens


title: Subject 649, region Nucleus Accumbens


title: Subject 332, region Nucleus Accumbens

source_name: Nucleus Accumbens, 94 yr old female


title: Subject 215, region Nucleus Accumbens

source_name: Nucleus Accumbens, 91 yr old female


title: Subject 675, region Nucleus Accumbens


title: Subject 256, region Nucleus Accumbens

source_name: Nucleus Accumbens, 99 yr old female


title: Subject 985, region Nucleus Accumbens

source_name: Nucleus Accumbens, 78 yr old male

value: male

value: hispanic

value: Normal


title: Subject 972, region Nucleus Accumbens

source_name: Nucleus Accumbens, 74 yr old male


title: Subject 757, region Nucleus Accumbens


title: Subject 495, region Nucleus Accumbens

source_name: Nucleus Accumbens, 69 yr old male


title: Subject 230, region Nucleus Accumbens


title: Subject 843, region Nucleus Accumbens

source_name: Nucleus Accumbens, 66 yr old male


title: Subject 990, region Nucleus Accumbens

source_name: Nucleus Accumbens, 62 yr old female


title: Subject 842, region Nucleus Accumbens

source_name: Nucleus Accumbens, 83 yr old female


title: Subject 176, region Nucleus Accumbens

source_name: Nucleus Accumbens, 72 yr old female


title: Subject 1039, region Nucleus Accumbens

source_name: Nucleus Accumbens, 85 yr old male


title: Subject 625, region Nucleus Accumbens

source_name: Nucleus Accumbens, 102 yr old female


title: Subject 923, region Nucleus Accumbens

value: asian


title: Subject 776, region Nucleus Accumbens

source_name: Nucleus Accumbens, 95 yr old male


title: Subject 626, region Amygdala

source_name: Amygdala, 88 yr old female

value: Amygdala


title: Subject 571, region Amygdala

source_name: Amygdala, 89 yr old female


title: Subject 176, region Amygdala

source_name: Amygdala, 72 yr old female


title: Subject 375, region Amygdala

source_name: Amygdala, 87 yr old female


title: Subject 870, region Amygdala

source_name: Amygdala, 85 yr old female


title: Subject 1023, region Amygdala

source_name: Amygdala, 92 yr old female


title: Subject 551, region Nucleus Accumbens

source_name: Nucleus Accumbens, 85 yr old female


title: Subject 256, region Amygdala

source_name: Amygdala, 99 yr old female


title: Subject 347, region Amygdala

source_name: Amygdala, 84 yr old female


title: Subject 1036, region Amygdala

source_name: Amygdala, 93 yr old male


title: Subject 675, region Amygdala


title: Subject 457, region Amygdala


title: Subject 364, region Amygdala


title: Subject 671, region Amygdala


title: Subject 740, region Amygdala

source_name: Amygdala, 102 yr old female


title: Subject 215, region Amygdala

source_name: Amygdala, 91 yr old female


title: Subject 332, region Amygdala

source_name: Amygdala, 94 yr old female


title: Subject 692, region Amygdala

source_name: Amygdala, 96 yr old female


title: Subject 708, region Amygdala

source_name: Amygdala, 78 yr old female


title: Subject 757, region Amygdala


title: Subject 1031, region Amygdala

source_name: Amygdala, 64 yr old male


title: Subject 1009, region Amygdala

source_name: Amygdala, 76 yr old male


title: Subject 1024, region Amygdala

source_name: Amygdala, 79 yr old female


title: Subject 923, region Amygdala

source_name: Amygdala, 69 yr old male


title: Subject 985, region Amygdala

source_name: Amygdala, 78 yr old male


title: Subject 532, region Amygdala


title: Subject 776, region Amygdala

source_name: Amygdala, 95 yr old male


title: Subject 800, region Amygdala

source_name: Amygdala, 89 yr old female


title: Subject 843, region Amygdala

source_name: Amygdala, 66 yr old male


title: Subject 1039, region Amygdala

source_name: Amygdala, 85 yr old male


title: Subject 625, region Amygdala


title: Late Pg

status: Public on May 13 2016

description: Gene expression data from mouse platelets, collected 9 weeks after the end of 3 weeks of P. gingivalis administration.

hyb_protocol: The labeled, fragmented DNA was hybridized to the Mouse Gene 1.0 ST Array (Affymetrix, Santa Clara, CA) for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm).  The hybridized samples were washed and stained using an Affymetrix fluidics station 450.

data_processing: Raw Affymetrix CEL files were normalized to produce Entrez Gene-identifier-specific expression values using the implementation of the Robust Multiarray Average (RMA) in the affy Bioconductor package (version 1.36.1), using R version 2.15.1 and the Brainarray mogene10stv1mmentrezg R package (version 14.0.0) (http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/14.0.0/entrezg.download/MoGene10stv1_Mm_ENTREZG_14.0.0.zip).

source_name: platelets

extract_protocol: Platelets were isolated from citrated blood collected at each timepoint via cardiac puncture. Platelet isolation was done through serial centrifugation steps at room temperature. The final platelet pellet was lysed using Qiazol and total RNA was isolated using the RNAeasy kit (Qiagen, Valencia, CA).

treatment_protocol: ApoE-/- mice were either left untreated (control) or infected with either Porphyromonas gingivalis (Pg) or Chlamydia pneumoniae (Cp) for 3 weeks, and blood was collected either 1 day or 9 weeks after the last infection. Another group of ApoE-/- mice were fed a Western Diet for 9 weeks and blood was collected.

tag: strain

tag: genotype/variation

value: ApoE-/-

tag: treatment

value: P. gingivalis

value: late

tag: cell type

value: platelet


title: Brd3 7D

status: Public on Mar 07 2016

description: Gene expression data of knockdowns of three bromodomain genes in rat insuloma cell lines

hyb_protocol: The labeled, fragmented DNA was hybridized to the Affymetrix Rat Gene 2.0 ST Array for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm). The hybridized samples were washed and stained using an Affymetrix fluidics station 450.

data_processing: Raw Affymetrix CEL files were normalized to produce Entrez Gene-identifier-specific expression values using the implementation of the Robust Multiarray Average (RMA) in the affy package in the Bioconductor software suite (version 2.12), using R version 2.15.1 and the Brainarray ragene20strnentrezg R package (version 17.0.0) (http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/17.0.0/entrezg.download/ragene20st_Rn_ENTREZG_17.0.0.zip).

organism: Rattus norvegicus

source_name: INS-1 832/13 rat insuloma cell line

growth_protocol: INS-1 cells were cultured in RPMI 1640 media supplemented with 1 mM pyruvate, 10 mM HEPES, 50 IU/ml penicillin, 50 µg/ml streptomycin and 10% fetal bovine serum (FBS) and used between passages 60 and 130. INS-1 cells were seeded in a 24 well culture plate at 25,000 cells/well.

extract_protocol: RNA from INS-1 cells was isolated using an RNeasy kit (Qiagen, Waltham, MA), quantified using the 7500 Fast Real-Time PCR System (Applied Biosystems) and labeled as described below.

treatment_protocol: Dharmacon ON-TARGETplus SMARTpool siRNA (20 nM) with DharmaFECT formulation #1 reagent (GE Life Sciences, Pittsburgh, PA) was used for Brd2, Brd3 and Brd4 knockdown. Three days after seeding, cells were transfected for 24 hrs. RNA was extracted 72 hrs after start of transfection.

tag: sirna

tag: cell line


title: Early Cp

description: Gene expression data from mouse platelets, collected 1 day after the end of 3 weeks of C. pneumoniae administration.

value: C. pneumoniae

tag: timepoint

value: early

value: whole blood


title: Late Cp

description: Gene expression data from mouse platelets, collected 9 weeks after the end of 3 weeks of C. pneumoniae administration.


title: Brd4 10C


title: Subject 551, region Amygdala

source_name: Amygdala, 85 yr old female

tag: subject id

tag: Sex

value: female

tag: race

value: white

tag: postmortem interval minutes

tag: ph


title: Late control

description: Gene expression data from platelets of a control mouse, collected 12 weeks after the start of the experiment.

value: control


title: Late Western diet

description: Gene expression data from mouse platelets, collected 9 weeks after the start of a Western diet.

value: Western diet


title: Brd3 8C


title: Brd2 6G


title: Brd3 7G


title: non-targeted 3D

value: NTC


title: Subject 495, region Amygdala

value: male

value: black

tag: clinical dementia rating

tag: braak neurofibrillary tangle score

tag: neuropathological category

tag: average neuritic plaque density

tag: sum of cerad rating scores in multiple brain regions

value: post-mortem brain


title: non-targeted 3G


title: Brd4 9G


title: Brd2 6D


title: Early Pg

description: Gene expression data from mouse platelets, collected 1 day after the end of 3 weeks of P. gingivalis administration.

tag: strain

tag: tissue


title: Brd4 9D


title: non-targeted 4C


title: Early control

description: Gene expression data from platelets of a control mouse, collected 3 weeks after the start of the experiment.

tag: genotype/variation

tag: treatment


title: Brd2 6C

tag: sirna


title: dkfz_MNG_15-0012

status: Public on Feb 25 2016

type: genomic

first: Volker

last: Hovestadt

address: 360 Longwood Avenue

department: Pediatric Oncology

institute: Dana-Farber Cancer Institute

description:
DNA Methylation data from a brain tumor sample
9611519054_R04C01

hyb_protocol: Illumina

scan_protocol: Illumina iScan System

data_processing: Raw signal intensities were obtained from IDAT-files using the minfi Bioconductor package. Signal intensities were normalized per sample by performing a background correction (shifting of mean negative control probe intensity to 0) and a dye-bias correction (scaling of mean normalization control probe intensity to 10,000). Standard beta-values were calculated.

label: biotin/DNP

molecule: genomic DNA

source_name: MNG

label_protocol: Illumina

extract_protocol: Extraction of high molecular weight DNA from frozen tumor samples was carried out using a Qiagen Blood & Cell Culture DNA Midi Kit (Qiagen, Hilden, Germany) after milling of the frozen sample in a Micro-Dismembrator S (B. Braun, Melsungen, Germany). Automated DNA purification from formalin-fixed, paraffin-embedded (FFPE) tissue was performed using the Maxwell Rapid Sample Concentrator (Promega, Madison, USA). DNA from FFPE tissue was restored using the Infinium HD FFPE DNA Restore Kit (Illumina, San Diego, USA).

tag: institutional tumor diagnosis

value: MNG

tag: molecular subgroup

tag: gender

value: F

tag: age (years)

tag: tumor location

value: temporal/occipital lobe, right


title: dkfz_SARC_15-0001

description:
DNA Methylation data from a brain tumor sample
3998523077_R02C02

source_name: SARCOMA (NOS)

value: SARCOMA (NOS)

value: M

value: cerebral (NOS)


title: dkfz_MB_15-0049

description:
DNA Methylation data from a brain tumor sample
9374341144_R02C02

source_name: MB

value: MB


title: dkfz_MNG_15-0011

description:
DNA Methylation data from a brain tumor sample
9878820127_R04C02

value: frontal lobe


title: dkfz_MB_15-0048

description:
DNA Methylation data from a brain tumor sample
9297949033_R06C01

value: cerebellar


title: dkfz_MB_15-0047

description:
DNA Methylation data from a brain tumor sample
9297949037_R03C01


title: SUM159 POSTN knockdown replicate 3

description: Gene expression data from SUM159 cell line expressing shRNA targeting POSTN

hyb_protocol: The labeled, fragmented DNA was hybridized to the Human Gene 2.0 ST Array (Affymetrix, Santa Clara, CA) for 18 hours in a GeneChip Hybridization oven 640 at 45oC with rotation (60 rpm).  The hybridized samples were washed and stained using an Affymetrix fluidics station 450.

data_processing: Raw Affymetrix CEL files were normalized to produce Entrez Gene-identifier-specific expression values using the implementation of the Robust Multiarray Average (RMA) in the affy Bioconductor package (version 1.36.1) and the Brainarray hugene20sthsentrezgcdf R package (version 16.0.0) (http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/16.0.0/entrezg.download/HuGene20st_Hs_ENTREZG_16.0.0.zip).

source_name: SUM159 cell line

growth_protocol: The cells were grown in serum-reduced Ham's/F12 (0.1% FBS) for 48 hours prior to RNA isolation.

extract_protocol: Total RNA was isolated with Trizol and cleaned up with the Rneasy Mini kit.

tag: cell line

tag: vector

value: shRNA targeting POSTN


title: SUM159 ITGB3 knockdown replicate 2

description: Gene expression data from SUM159 cell line expressing shRNA targeting ITGB3

value: shRNA targeting ITGB3


title: SUM159 POSTN knockdown replicate 1


title: SUM159 POSTN knockdown replicate 2


title: SUM159 GFP knockdown replicate 1

description: Gene expression data from SUM159 cell line expressing shRNA targeting GFP

value: shRNA targeting GFP


title: SUM159 ITGB3 knockdown replicate 3


title: dkfz_GBM_15-0009

description:
DNA Methylation data from a brain tumor sample
9340996012_R04C02

source_name: GBM

value: GBM

value: thalamic


title: dkfz_GBM_15-0006

description:
DNA Methylation data from a brain tumor sample
9283265153_R03C01

value: temporal lobe


title: SUM159 ITGB3 knockdown replicate 1


title: SUM159 GFP knockdown replicate 3


title: dkfz_GBM_15-0008

description:
DNA Methylation data from a brain tumor sample
9379086095_R06C02

value: temporal/parietal/occipital lobe


title: dkfz_GBM_15-0004

description:
DNA Methylation data from a brain tumor sample
9444375004_R02C02

value: parietal lobe


title: dkfz_GBM_15-0007

description:
DNA Methylation data from a brain tumor sample
9969477029_R05C02


title: dkfz_GBM_15-0010

description:
DNA Methylation data from a brain tumor sample
9969477013_R04C02

value: frontal lobe, right


title: SUM159 GFP knockdown replicate 2


title: dkfz_GBM_15-0005

description:
DNA Methylation data from a brain tumor sample
9969477122_R01C02


title: dkfz_ETMR_15-0012

description:
DNA Methylation data from a brain tumor sample
3998523031_R02C02

source_name: ETMR

value: ETMR


title: dkfz_ETMR_15-0013

description:
DNA Methylation data from a brain tumor sample
3998567085_R01C02

value: F

value: hemispheric (NOS)


title: dkfz_GBM_15-0001

description:
DNA Methylation data from a brain tumor sample
9761749097_R04C01

value: M

value: brainstem


title: dkfz_GBM_15-0002

description:
DNA Methylation data from a brain tumor sample
9969477031_R01C01


title: dkfz_EPN_15-0036

description:
DNA Methylation data from a brain tumor sample
9553932012_R02C02

source_name: EPN

value: EPN


title: dkfz_EPN_15-0035

description:
DNA Methylation data from a brain tumor sample
9611518001_R04C01


title: dkfz_EPN_15-0034

description:
DNA Methylation data from a brain tumor sample
9968646144_R04C02

value: supratentorial (NOS)


title: dkfz_EPN_15-0033

description:
DNA Methylation data from a brain tumor sample
9373550034_R04C02


title: dkfz_EPN_15-0032

description:
DNA Methylation data from a brain tumor sample
9426020061_R02C01


title: dkfz_EPN_15-0030

description:
DNA Methylation data from a brain tumor sample
3998568089_R02C02

value: hemispheric, right (NOS)


title: dkfz_EPN_15-0031

description:
DNA Methylation data from a brain tumor sample
9422491130_R05C02

value: spinal (C2)


title: dkfz_EPN_15-0029

description:
DNA Methylation data from a brain tumor sample
9968646160_R01C02

value: posterior fossa


title: dkfz_EPN_15-0027

description:
DNA Methylation data from a brain tumor sample
6929806024_R02C01


title: dkfz_EPN_15-0024

description:
DNA Methylation data from a brain tumor sample
9340996003_R05C02

value: fronto-basal


title: dkfz_EPN_15-0021

description:
DNA Methylation data from a brain tumor sample
9968646155_R02C01

value: frontal lobe


title: dkfz_EPN_15-0022

description:
DNA Methylation data from a brain tumor sample
9968646098_R01C02


title: dkfz_EPN_15-0026

description:
DNA Methylation data from a brain tumor sample
9296930052_R06C01


title: dkfz_EPN_15-0025

description:
DNA Methylation data from a brain tumor sample
3999834003_R03C01

value: cerebellar


title: dkfz_EPN_15-0028

description:
DNA Methylation data from a brain tumor sample
6026818110_R02C02


title: dkfz_EPN_15-0023

description:
DNA Methylation data from a brain tumor sample
3998523017_R05C01

value: frontal/parietal lobe


title: dkfz_GBM_15-0003

description:
DNA Methylation data from a brain tumor sample
9878820140_R03C02

value: GBM


title: dkfz_EPN_15-0019

description:
DNA Methylation data from a brain tumor sample
9426020061_R05C02


title: dkfz_EPN_15-0020

description:
DNA Methylation data from a brain tumor sample
3998909025_R04C02


title: dkfz_CNS-tumor_15-0001

description:
DNA Methylation data from a brain tumor sample
3998909182_R03C01

source_name: unclear histology

value: unclear histology

value: frontal lobe, left


title: dkfz_ETMR_15-0011

description:
DNA Methylation data from a brain tumor sample
6247004024_R06C02

value: ETMR


title: dkfz_CNS-NET_15-0001

description:
DNA Methylation data from a brain tumor sample
3998568129_R05C02

source_name: malignant neuroepithelial tumour

value: malignant neuroepithelial tumour

value: F


title: dkfz_ABM_15-0010

description:
DNA Methylation data from a brain tumor sample
3999308159_R05C01

source_name: ABM

value: ABM


title: dkfz_ABM_15-0009

description:
DNA Methylation data from a brain tumor sample
3999308159_R04C01

value: frontal lobe, right


title: dkfz_ABM_15-0008

description:
DNA Methylation data from a brain tumor sample
9444375028_R06C02

value: parietal lobe, left


title: dkfz_ABM_15-0007

description:
DNA Methylation data from a brain tumor sample
9969477104_R04C02

value: M

value: temporal lobe, right


title: dkfz_ABM_15-0005

description:
DNA Methylation data from a brain tumor sample
9376561042_R02C01


title: dkfz_ABM_15-0006

description:
DNA Methylation data from a brain tumor sample
3998568129_R06C02

value: parietal lobe, right


title: dkfz_ABM_15-0003

description:
DNA Methylation data from a brain tumor sample
3998568150_R03C02


title: dkfz_ABM_15-0002

description:
DNA Methylation data from a brain tumor sample
9533774024_R04C02


title: dkfz_ABM_15-0004

description:
DNA Methylation data from a brain tumor sample
9007217139_R06C01


title: dkfz_ABM_15-0001

description:
DNA Methylation data from a brain tumor sample
3998568129_R04C02

value: frontal/temporal lobe


title: dkfz_AA_15-0002

description:
DNA Methylation data from a brain tumor sample
9969477101_R03C02

source_name: AA

value: AA

value: temporal/parietal lobe


title: dkfz_PXA_15-0009

description:
DNA Methylation data from a brain tumor sample
9305651095_R01C02

source_name: PXA

value: PXA


title: dkfz_PXA_15-0008

description:
DNA Methylation data from a brain tumor sample
8963311099_R01C02


title: dkfz_PXA_15-0007

description:
DNA Methylation data from a brain tumor sample
8963311099_R06C01

value: frontal lobe


title: dkfz_PXA_15-0006

description:
DNA Methylation data from a brain tumor sample
9969477080_R01C02


title: dkfz_EPN_15-0018

description:
DNA Methylation data from a brain tumor sample
8622007026_R05C02

value: EPN

value: cerebellar


title: dkfz_PXA_15-0005

description:
DNA Methylation data from a brain tumor sample
9721365197_R03C02

value: parietal/temporal lobe, left


title: dkfz_PXA_15-0004

description:
DNA Methylation data from a brain tumor sample
9553932123_R01C02

value: temporal lobe, left


title: dkfz_PXA_15-0002

description:
DNA Methylation data from a brain tumor sample
9721365197_R04C02

value: frontal lobe, left


title: dkfz_PXA_15-0003

description:
DNA Methylation data from a brain tumor sample
8963311099_R04C01


title: dkfz_PXA_15-0001

description:
DNA Methylation data from a brain tumor sample
8963311099_R02C02

value: F


title: dkfz_PIN_15-0020

description:
DNA Methylation data from a brain tumor sample
9969477081_R01C01

source_name: PINEAL TUMOUR

value: PINEAL TUMOUR

value: PINEAL

value: pineal region


title: dkfz_PIN_15-0019

description:
DNA Methylation data from a brain tumor sample
9007225003_R06C01

value: M


title: dkfz_PIN_15-0015

description:
DNA Methylation data from a brain tumor sample
9553932054_R02C01


title: dkfz_PIN_15-0016

description:
DNA Methylation data from a brain tumor sample
9553932054_R03C01


title: dkfz_PIN_15-0017

description:
DNA Methylation data from a brain tumor sample
9007225003_R01C01


title: dkfz_PIN_15-0010

description:
DNA Methylation data from a brain tumor sample
9340996008_R02C02


title: dkfz_PIN_15-0009

description:
DNA Methylation data from a brain tumor sample
8942351007_R03C02


title: dkfz_PIN_15-0013

description:
DNA Methylation data from a brain tumor sample
9376538153_R01C01


title: dkfz_PIN_15-0012

description:
DNA Methylation data from a brain tumor sample
9553932053_R05C02


title: dkfz_PIN_15-0007

description:
DNA Methylation data from a brain tumor sample
9553932029_R06C02


title: dkfz_PIN_15-0005

description:
DNA Methylation data from a brain tumor sample
9007225144_R01C01


title: dkfz_PIN_15-0008

description:
DNA Methylation data from a brain tumor sample
9376538153_R02C01


title: dkfz_PIN_15-0006

description:
DNA Methylation data from a brain tumor sample
9340996008_R01C02


title: dkfz_PIN_15-0004

description:
DNA Methylation data from a brain tumor sample
9007225003_R03C01


title: dkfz_PIN_15-0003

description:
DNA Methylation data from a brain tumor sample
9007225144_R04C02


title: dkfz_PIN_15-0002

description:
DNA Methylation data from a brain tumor sample
9007225163_R04C01


title: dkfz_PIN_15-0001

description:
DNA Methylation data from a brain tumor sample
9553932053_R02C02


title: dkfz_NORM_15-0007

description:
DNA Methylation data from a brain tumor sample
8622007080_R06C01

value: CTRL

value: hemispheric (NOS)


title: dkfz_NORM_15-0006

description:
DNA Methylation data from a brain tumor sample
7310440009_R01C01


title: dkfz_NORM_15-0005

description:
DNA Methylation data from a brain tumor sample
7310440006_R04C02


title: dkfz_NORM_15-0008

description:
DNA Methylation data from a brain tumor sample
7310440006_R02C02


title: dkfz_NORM_15-0004

description:
DNA Methylation data from a brain tumor sample
7310440006_R03C02


title: dkfz_NORM_15-0003

description:
DNA Methylation data from a brain tumor sample
8622007080_R03C02


title: dkfz_NORM_15-0002

description:
DNA Methylation data from a brain tumor sample
7310440006_R04C01


title: dkfz_NORM_15-0001

description:
DNA Methylation data from a brain tumor sample
8622007080_R01C01


title: dkfz_PIN_15-0018

description:
DNA Methylation data from a brain tumor sample
9420867122_R01C01

value: third ventricle/pineal region


title: dkfz_MNG_15-0009

description:
DNA Methylation data from a brain tumor sample
8622007073_R01C01

value: MNG


title: dkfz_MNG_15-0007

description:
DNA Methylation data from a brain tumor sample
8622007072_R06C02

value: temporal lobe, right


title: dkfz_PIN_15-0014

description:
DNA Methylation data from a brain tumor sample
9553932053_R03C02

value: third ventricle


title: dkfz_MNG_15-0008

description:
DNA Methylation data from a brain tumor sample
8622007072_R06C01

value: temporal/parietal lobe


title: dkfz_PIN_15-0011

description:
DNA Methylation data from a brain tumor sample
9007225144_R03C02


title: dkfz_MNG_15-0010

description:
DNA Methylation data from a brain tumor sample
8622007072_R04C01


title: dkfz_MNG_15-0005

description:
DNA Methylation data from a brain tumor sample
8622007072_R02C01

value: parietal lobe, left


title: dkfz_MNG_15-0003

description:
DNA Methylation data from a brain tumor sample
8622007072_R01C02

value: falx cerebri


title: dkfz_MNG_15-0001

description:
DNA Methylation data from a brain tumor sample
8622007073_R03C01

value: intraventricular


title: dkfz_MB_15-0046

description:
DNA Methylation data from a brain tumor sample
6752625079_R04C02

value: MB

value: cerebellar


title: dkfz_MNG_15-0004

description:
DNA Methylation data from a brain tumor sample
8622007072_R02C02

value: F

value: parasagittal/postcentral, right


title: dkfz_MB_15-0045

description:
DNA Methylation data from a brain tumor sample
6752625079_R03C02


title: dkfz_MB_15-0044

description:
DNA Methylation data from a brain tumor sample
6752625054_R03C02


title: dkfz_MB_15-0042

description:
DNA Methylation data from a brain tumor sample
6752625054_R04C02


title: dkfz_MB_15-0041

description:
DNA Methylation data from a brain tumor sample
6929689161_R04C02


title: dkfz_MB_15-0043

description:
DNA Methylation data from a brain tumor sample
6929689161_R02C02


title: dkfz_MB_15-0040

description:
DNA Methylation data from a brain tumor sample
6929689161_R03C02


title: dkfz_MB_15-0039

description:
DNA Methylation data from a brain tumor sample
8622007025_R03C02


title: dkfz_MB_15-0038

description:
DNA Methylation data from a brain tumor sample
6929689136_R04C01


title: dkfz_MB_15-0036

description:
DNA Methylation data from a brain tumor sample
8622007025_R05C01


title: dkfz_MB_15-0035

description:
DNA Methylation data from a brain tumor sample
8622007025_R01C01


title: dkfz_MB_15-0037

description:
DNA Methylation data from a brain tumor sample
6929718009_R04C01


title: dkfz_MB_15-0032

description:
DNA Methylation data from a brain tumor sample
6752625054_R04C01


title: dkfz_MB_15-0033

description:
DNA Methylation data from a brain tumor sample
6929793061_R04C01


title: dkfz_MB_15-0031

description:
DNA Methylation data from a brain tumor sample
6247004027_R03C01


title: dkfz_MNG_15-0006

description:
DNA Methylation data from a brain tumor sample
8622007072_R05C01


title: dkfz_MB_15-0026

description:
DNA Methylation data from a brain tumor sample
6929793061_R01C02


title: dkfz_MB_15-0027

description:
DNA Methylation data from a brain tumor sample
6929718009_R01C01


title: dkfz_MB_15-0029

description:
DNA Methylation data from a brain tumor sample
6247004027_R06C01


title: dkfz_MB_15-0025

description:
DNA Methylation data from a brain tumor sample
6969568004_R05C02


title: dkfz_MB_15-0023

description:
DNA Methylation data from a brain tumor sample
6969568004_R02C02


title: dkfz_MNG_15-0002

description:
DNA Methylation data from a brain tumor sample
8622007072_R03C01


title: dkfz_MB_15-0030

description:
DNA Methylation data from a brain tumor sample
6247004027_R05C01


title: dkfz_MB_15-0028

description:
DNA Methylation data from a brain tumor sample
6929718001_R04C02


title: dkfz_MB_15-0022

description:
DNA Methylation data from a brain tumor sample
8622007026_R03C02


title: dkfz_MB_15-0018

description:
DNA Methylation data from a brain tumor sample
6752625054_R02C02


title: dkfz_MB_15-0019

description:
DNA Methylation data from a brain tumor sample
6752625054_R06C02


title: dkfz_MB_15-0021

description:
DNA Methylation data from a brain tumor sample
6929793061_R03C02


title: dkfz_MB_15-0024

description:
DNA Methylation data from a brain tumor sample
9007217016_R03C01


title: dkfz_MB_15-0017

description:
DNA Methylation data from a brain tumor sample
6752625079_R02C02


title: dkfz_MB_15-0020

description:
DNA Methylation data from a brain tumor sample
6752625079_R06C01


title: dkfz_MB_15-0015

description:
DNA Methylation data from a brain tumor sample
6929793052_R02C02


title: dkfz_MB_15-0014

description:
DNA Methylation data from a brain tumor sample
6752625079_R01C02


title: dkfz_MB_15-0012

description:
DNA Methylation data from a brain tumor sample
8622007029_R03C01


title: dkfz_MB_15-0016

description:
DNA Methylation data from a brain tumor sample
6752625054_R05C02


title: dkfz_MB_15-0011

description:
DNA Methylation data from a brain tumor sample
8622007029_R02C01


title: dkfz_MB_15-0013

description:
DNA Methylation data from a brain tumor sample
8622007029_R02C02


title: dkfz_MB_15-0034

description:
DNA Methylation data from a brain tumor sample
6969568004_R04C02


title: dkfz_MB_15-0007

description:
DNA Methylation data from a brain tumor sample
9296930039_R05C02


title: dkfz_MB_15-0009

description:
DNA Methylation data from a brain tumor sample
6229017094_R04C02


title: dkfz_MB_15-0008

description:
DNA Methylation data from a brain tumor sample
6929793061_R01C01


title: dkfz_MB_15-0006

description:
DNA Methylation data from a brain tumor sample
6969568004_R04C01


title: dkfz_MB_15-0005

description:
DNA Methylation data from a brain tumor sample
6229017094_R05C02


title: dkfz_MB_15-0004

description:
DNA Methylation data from a brain tumor sample
6929793052_R03C02


title: dkfz_MB_15-0003

description:
DNA Methylation data from a brain tumor sample
9297949033_R01C01


title: dkfz_MB_15-0002

description:
DNA Methylation data from a brain tumor sample
6929793061_R02C01


title: dkfz_MB_15-0001

description:
DNA Methylation data from a brain tumor sample
9297949033_R04C01


title: dkfz_HGG_15-0055

description:
DNA Methylation data from a brain tumor sample
9379086095_R01C01

value: GBM

value: brainstem


title: dkfz_HGG_15-0054

description:
DNA Methylation data from a brain tumor sample
9721365095_R05C02

value: M


title: dkfz_HGG_15-0051

description:
DNA Methylation data from a brain tumor sample
6164621081_R02C01

value: parietal lobe


title: dkfz_HGG_15-0052

description:
DNA Methylation data from a brain tumor sample
9406921073_R03C02

value: temporal lobe


title: dkfz_HGG_15-0050

description:
DNA Methylation data from a brain tumor sample
10003886252_R04C01


title: dkfz_HGG_15-0049

description:
DNA Methylation data from a brain tumor sample
10003886259_R03C02


title: dkfz_HGG_15-0047

description:
DNA Methylation data from a brain tumor sample
9855358065_R04C02


title: dkfz_HGG_15-0048

description:
DNA Methylation data from a brain tumor sample
9721365103_R04C02


title: dkfz_HGG_15-0046

description:
DNA Methylation data from a brain tumor sample
9969477018_R04C01

value: frontal lobe


title: dkfz_HGG_15-0045

description:
DNA Methylation data from a brain tumor sample
9969477109_R03C02


title: dkfz_HGG_15-0044

description:
DNA Methylation data from a brain tumor sample
9534104007_R02C02

value: temporal lobe, left


title: dkfz_HGG_15-0043

description:
DNA Methylation data from a brain tumor sample
8963282039_R03C02


title: dkfz_HGG_15-0041

description:
DNA Methylation data from a brain tumor sample
6229017111_R02C02


title: dkfz_MB_15-0010

description:
DNA Methylation data from a brain tumor sample
6229017094_R01C02


title: dkfz_HGG_15-0039

description:
DNA Methylation data from a brain tumor sample
9379082092_R03C02

value: frontal lobe, left


title: dkfz_HGG_15-0042

description:
DNA Methylation data from a brain tumor sample
9878820030_R04C02

value: hemispheric (NOS)


title: dkfz_HGG_15-0037

description:
DNA Methylation data from a brain tumor sample
5684819013_R04C01

value: thalamic, left


title: dkfz_HGG_15-0036

description:
DNA Methylation data from a brain tumor sample
5684819014_R05C02

value: thalamic


title: dkfz_HGG_15-0034

description:
DNA Methylation data from a brain tumor sample
6969568103_R01C01


title: dkfz_HGG_15-0035

description:
DNA Methylation data from a brain tumor sample
8622007059_R03C02


title: dkfz_HGG_15-0033

description:
DNA Methylation data from a brain tumor sample
5684819014_R03C01

value: intraventricular, left


title: dkfz_HGG_15-0030

description:
DNA Methylation data from a brain tumor sample
9283265032_R04C01

value: fourth ventricle/brainstem


title: dkfz_HGG_15-0032

description:
DNA Methylation data from a brain tumor sample
6969568103_R02C01

value: pons


title: dkfz_HGG_15-0029

description:
DNA Methylation data from a brain tumor sample
9283265032_R03C01

value: spinal (T5-7)


title: dkfz_HGG_15-0026

description:
DNA Methylation data from a brain tumor sample
6164621131_R03C02

value: F


title: dkfz_HGG_15-0028

description:
DNA Methylation data from a brain tumor sample
6164621155_R02C02


title: dkfz_HGG_15-0025

description:
DNA Methylation data from a brain tumor sample
5911815001_R04C02


title: dkfz_HGG_15-0031

description:
DNA Methylation data from a brain tumor sample
5684819013_R03C02

value: cerebellopontine angle


title: dkfz_HGG_15-0027

description:
DNA Methylation data from a brain tumor sample
6164621081_R01C02

value: GBM


title: dkfz_HGG_15-0053

description:
DNA Methylation data from a brain tumor sample
9340996014_R03C01


title: dkfz_HGG_15-0024

description:
DNA Methylation data from a brain tumor sample
6164621081_R01C01


title: dkfz_HGG_15-0040

description:
DNA Methylation data from a brain tumor sample
9969477108_R01C01


title: dkfz_HGG_15-0022

description:
DNA Methylation data from a brain tumor sample
6164621131_R06C02


title: dkfz_HGG_15-0018

description:
DNA Methylation data from a brain tumor sample
6969568103_R02C02


title: dkfz_HGG_15-0023

description:
DNA Methylation data from a brain tumor sample
6164621155_R06C02


title: dkfz_HGG_15-0017

description:
DNA Methylation data from a brain tumor sample
6969568103_R01C02


title: dkfz_HGG_15-0019

description:
DNA Methylation data from a brain tumor sample
5684819014_R01C01


title: dkfz_HGG_15-0038

description:
DNA Methylation data from a brain tumor sample
5684819014_R02C02


title: dkfz_HGG_15-0015

description:
DNA Methylation data from a brain tumor sample
6164621081_R04C02


title: dkfz_HGG_15-0021

description:
DNA Methylation data from a brain tumor sample
6164621081_R03C01


title: dkfz_HGG_15-0014

description:
DNA Methylation data from a brain tumor sample
5911815001_R02C01

value: hemispheric, left


title: dkfz_HGG_15-0010

description:
DNA Methylation data from a brain tumor sample
6969568103_R06C01


title: dkfz_HGG_15-0012

description:
DNA Methylation data from a brain tumor sample
6929806024_R02C02

value: M

value: supratentorial (NOS)


title: dkfz_HGG_15-0013

description:
DNA Methylation data from a brain tumor sample
5684819014_R01C02

value: temporal lobe, right


title: dkfz_HGG_15-0009

description:
DNA Methylation data from a brain tumor sample
6969568103_R05C01

value: occipital/parietal lobe, right


title: dkfz_HGG_15-0007

description:
DNA Methylation data from a brain tumor sample
9969477043_R03C02

value: parietal/temporal lobe


title: dkfz_HGG_15-0006

description:
DNA Methylation data from a brain tumor sample
9969477031_R04C01


title: dkfz_HGG_15-0004

description:
DNA Methylation data from a brain tumor sample
9741950086_R04C02

value: temporal lobe


title: dkfz_HGG_15-0001

description:
DNA Methylation data from a brain tumor sample
5684819026_R04C02


title: dkfz_EWS_15-0007

description:
DNA Methylation data from a brain tumor sample
9553932123_R05C02

source_name: EWS

value: EWS


title: dkfz_EWS_15-0008

description:
DNA Methylation data from a brain tumor sample
9533774024_R01C02


title: dkfz_EWS_15-0006

description:
DNA Methylation data from a brain tumor sample
9376561024_R01C01


title: dkfz_EWS_15-0009

description:
DNA Methylation data from a brain tumor sample
8622007068_R03C02

value: spinal (T6/7)


title: dkfz_HGG_15-0002

description:
DNA Methylation data from a brain tumor sample
9444375018_R03C01


title: dkfz_HGG_15-0016

description:
DNA Methylation data from a brain tumor sample
8622007029_R06C02

value: corpus callosum/parietal lobe


title: dkfz_EWS_15-0003

description:
DNA Methylation data from a brain tumor sample
9533774067_R04C02


title: dkfz_HGG_15-0003

description:
DNA Methylation data from a brain tumor sample
9444375019_R05C01

value: frontal lobe


title: dkfz_ETMR_15-0009

description:
DNA Methylation data from a brain tumor sample
6929718057_R03C02

value: ETMR

value: parietal lobe


title: dkfz_ETMR_15-0010

description:
DNA Methylation data from a brain tumor sample
9305651053_R05C02


title: dkfz_EWS_15-0004

description:
DNA Methylation data from a brain tumor sample
9376538153_R06C02


title: dkfz_EWS_15-0001

description:
DNA Methylation data from a brain tumor sample
9769100024_R06C02


title: dkfz_EWS_15-0002

description:
DNA Methylation data from a brain tumor sample
9829119119_R04C02


title: dkfz_HGG_15-0011

description:
DNA Methylation data from a brain tumor sample
5684819013_R05C01

value: parietal/temporal lobe, left


title: dkfz_HGG_15-0020

description:
DNA Methylation data from a brain tumor sample
6164621155_R01C01

value: F


title: dkfz_HGG_15-0008

description:
DNA Methylation data from a brain tumor sample
5911815001_R06C01

value: frontal lobe, right


title: dkfz_ETMR_15-0008

description:
DNA Methylation data from a brain tumor sample
8622007027_R03C01

value: thalamic/lateral ventricle


title: dkfz_ETMR_15-0004

description:
DNA Methylation data from a brain tumor sample
6247004023_R03C01

value: parietal/occipital lobe


title: dkfz_ETMR_15-0002

description:
DNA Methylation data from a brain tumor sample
8622007027_R06C01

value: M

value: brainstem


title: dkfz_ETMR_15-0006

description:
DNA Methylation data from a brain tumor sample
6929718057_R04C02

value: cerebellar/brainstem


title: dkfz_ETMR_15-0007

description:
DNA Methylation data from a brain tumor sample
6247004023_R01C01


title: dkfz_ETMR_15-0001

description:
DNA Methylation data from a brain tumor sample
9379086117_R05C02

value: cerebellar


title: dkfz_EPN_15-0016

description:
DNA Methylation data from a brain tumor sample
9420867124_R01C01

value: EPN

value: parietal/temporal/occipital lobe


title: dkfz_ETMR_15-0005

description:
DNA Methylation data from a brain tumor sample
6247004023_R02C01


title: dkfz_HGG_15-0005

description:
DNA Methylation data from a brain tumor sample
5684819026_R01C02

value: GBM

value: temporal lobe, left


title: dkfz_EWS_15-0005

description:
DNA Methylation data from a brain tumor sample
9426021086_R01C02

value: EWS


title: dkfz_EPN_15-0014

description:
DNA Methylation data from a brain tumor sample
9420867124_R02C01

value: supratentorial (NOS)


title: dkfz_EPN_15-0015

description:
DNA Methylation data from a brain tumor sample
6929689149_R03C02


title: dkfz_EPN_15-0012

description:
DNA Methylation data from a brain tumor sample
9305651016_R04C01


title: dkfz_EPN_15-0011

description:
DNA Methylation data from a brain tumor sample
9305651027_R03C01


title: dkfz_EPN_15-0010

description:
DNA Methylation data from a brain tumor sample
6929806024_R06C02


title: dkfz_EPN_15-0008

description:
DNA Methylation data from a brain tumor sample
6929689149_R03C01


title: dkfz_EPN_15-0009

description:
DNA Methylation data from a brain tumor sample
7310440009_R06C01


title: dkfz_EPN_15-0007

description:
DNA Methylation data from a brain tumor sample
6752625106_R01C02


title: dkfz_EPN_15-0006

description:
DNA Methylation data from a brain tumor sample
6929806048_R05C02

value: frontal lobe


title: dkfz_ETMR_15-0003

description:
DNA Methylation data from a brain tumor sample
9379086117_R06C02

value: ETMR

value: hemispheric (NOS)


title: dkfz_EPN_15-0002

description:
DNA Methylation data from a brain tumor sample
6929806048_R01C02

value: F

value: parietal lobe


title: dkfz_EPN_15-0005

description:
DNA Methylation data from a brain tumor sample
6929689149_R01C01


title: dkfz_DIG_15-0005

description:
DNA Methylation data from a brain tumor sample
9407201030_R06C02

source_name: DIG

value: DIG

value: parietal lobe, left


title: dkfz_EPN_15-0003

description:
DNA Methylation data from a brain tumor sample
6752625107_R05C02

value: M


title: dkfz_EPN_15-0001

description:
DNA Methylation data from a brain tumor sample
6929806048_R06C02


title: dkfz_DIG_15-0003

description:
DNA Methylation data from a brain tumor sample
9376538153_R05C01

value: frontal/parietal lobe


title: dkfz_CPC_15-0008

description:
DNA Methylation data from a brain tumor sample
9769100123_R05C01

source_name: CPC

value: CPC

value: choroid plexus


title: dkfz_EPN_15-0017

description:
DNA Methylation data from a brain tumor sample
9376561042_R06C01

value: EPN

value: postcentral


title: dkfz_DIG_15-0002

description:
DNA Methylation data from a brain tumor sample
9305651051_R01C01

value: temporal lobe


title: dkfz_EPN_15-0004

description:
DNA Methylation data from a brain tumor sample
6929806024_R04C02


title: dkfz_DIG_15-0007

description:
DNA Methylation data from a brain tumor sample
9969477104_R02C02

value: occipital lobe


title: dkfz_DIG_15-0006

description:
DNA Methylation data from a brain tumor sample
9741950101_R05C01


title: dkfz_DIG_15-0004

description:
DNA Methylation data from a brain tumor sample
9407210090_R02C02


title: dkfz_CPC_15-0007

description:
DNA Methylation data from a brain tumor sample
9704031008_R01C01

value: lateral ventricle


title: dkfz_CPC_15-0005

description:
DNA Methylation data from a brain tumor sample
9769100123_R06C01


title: dkfz_DIG_15-0001

description:
DNA Methylation data from a brain tumor sample
8622007070_R06C01


title: dkfz_EPN_15-0013

description:
DNA Methylation data from a brain tumor sample
9296930076_R05C01


title: dkfz_CPC_15-0004

description:
DNA Methylation data from a brain tumor sample
9376538153_R01C02


title: dkfz_CPC_15-0003

description:
DNA Methylation data from a brain tumor sample
9340996058_R03C02


title: dkfz_CPC_15-0002

description:
DNA Methylation data from a brain tumor sample
6929806024_R03C02


title: dkfz_CPC_15-0001

description:
DNA Methylation data from a brain tumor sample
9376538153_R06C01


title: dkfz_ATRT_15-0012

description:
DNA Methylation data from a brain tumor sample
9376538156_R04C01

source_name: AT/RT

value: AT/RT


title: dkfz_ATRT_15-0011

description:
DNA Methylation data from a brain tumor sample
6247004023_R03C02

value: intraventricular


title: dkfz_ATRT_15-0009

description:
DNA Methylation data from a brain tumor sample
6929718027_R01C01

value: fourth ventricle/vermis


title: dkfz_ATRT_15-0008

description:
DNA Methylation data from a brain tumor sample
9379086124_R02C02

value: frontal lobe, right


title: dkfz_ATRT_15-0005

description:
DNA Methylation data from a brain tumor sample
6929718017_R01C01

value: F

value: brainstem/cerebellopontine angle


title: dkfz_ATRT_15-0006

description:
DNA Methylation data from a brain tumor sample
6164621144_R03C01


title: dkfz_ATRT_15-0003

description:
DNA Methylation data from a brain tumor sample
6164621144_R01C02

value: cerebellopontine angle


title: dkfz_ATRT_15-0004

description:
DNA Methylation data from a brain tumor sample
9376538156_R01C02


title: dkfz_ATRT_15-0001

description:
DNA Methylation data from a brain tumor sample
9305651054_R05C02

value: posterior fossa


title: dkfz_ATRT_15-0002

description:
DNA Methylation data from a brain tumor sample
6164621144_R03C02

value: M


title: dkfz_CNS-PNET_15-0321

description:
DNA Methylation data from a brain tumor sample
9741950107_R03C01

source_name: CNS-PNET

value: CNS-PNET

value: unclassifiable

value: frontal lobe


title: dkfz_CNS-PNET_15-0320

description:
DNA Methylation data from a brain tumor sample
3998920116_R06C02

value: pons


title: dkfz_CNS-PNET_15-0316

description:
DNA Methylation data from a brain tumor sample
8622007069_R02C01


title: dkfz_CNS-PNET_15-0319

description:
DNA Methylation data from a brain tumor sample
9003865025_R06C02

value: temporal/parietal lobe, right


title: dkfz_CNS-PNET_15-0318

description:
DNA Methylation data from a brain tumor sample
7990895127_R06C02

value: temporal lobe, right


title: dkfz_CNS-PNET_15-0323

description:
DNA Methylation data from a brain tumor sample
8622007069_R03C01

value: parietal/occipital lobe


title: dkfz_CNS-PNET_15-0317

description:
DNA Methylation data from a brain tumor sample
6229017023_R06C01


title: dkfz_CNS-PNET_15-0315

description:
DNA Methylation data from a brain tumor sample
6929718001_R02C01

value: parietal lobe


title: dkfz_CNS-PNET_15-0314

description:
DNA Methylation data from a brain tumor sample
6929718001_R06C01

value: temporal/parietal lobe


title: dkfz_CPC_15-0006

description:
DNA Methylation data from a brain tumor sample
9444375033_R04C01

value: CPC


title: dkfz_CNS-PNET_15-0310

description:
DNA Methylation data from a brain tumor sample
9003865025_R05C02


title: dkfz_CNS-PNET_15-0309

description:
DNA Methylation data from a brain tumor sample
3998523076_R05C01

value: parietal/occipital lobe, left


title: dkfz_CNS-PNET_15-0311

description:
DNA Methylation data from a brain tumor sample
9993943073_R04C01

value: frontal lobe, left


title: dkfz_ATRT_15-0010

description:
DNA Methylation data from a brain tumor sample
9379086117_R01C02

value: AT/RT

value: F


title: dkfz_CNS-PNET_15-0308

description:
DNA Methylation data from a brain tumor sample
8622007067_R03C01

value: temporo-basal, right


title: dkfz_CNS-PNET_15-0307

description:
DNA Methylation data from a brain tumor sample
7990895127_R06C01

value: central region, right


title: dkfz_CNS-PNET_15-0305

description:
DNA Methylation data from a brain tumor sample
9003865025_R05C01

value: ETMR

value: intraventricular


title: dkfz_CNS-PNET_15-0304

description:
DNA Methylation data from a brain tumor sample
9007225026_R03C01

value: CNS-PNET


title: dkfz_ATRT_15-0007

description:
DNA Methylation data from a brain tumor sample
9379086124_R04C01

value: M


title: dkfz_CNS-PNET_15-0306

description:
DNA Methylation data from a brain tumor sample
9980102125_R06C02

value: choroid plexus


title: dkfz_CNS-PNET_15-0303

description:
DNA Methylation data from a brain tumor sample
9007225035_R06C02

value: PINEAL

value: third ventricle


title: dkfz_CNS-PNET_15-0301

description:
DNA Methylation data from a brain tumor sample
9741950173_R06C02

value: temporal lobe


title: dkfz_CNS-PNET_15-0302

description:
DNA Methylation data from a brain tumor sample
9007217139_R03C01

value: frontal lobe, right


title: dkfz_CNS-PNET_15-0300

description:
DNA Methylation data from a brain tumor sample
8622007070_R03C02

value: frontal/parietal lobe


title: dkfz_CNS-PNET_15-0298

description:
DNA Methylation data from a brain tumor sample
6929718001_R04C01

value: supratentorial (NOS)


title: dkfz_CNS-PNET_15-0299

description:
DNA Methylation data from a brain tumor sample
9969477089_R06C02


title: dkfz_CNS-PNET_15-0297

description:
DNA Methylation data from a brain tumor sample
8622007149_R02C01


title: dkfz_CNS-PNET_15-0295

description:
DNA Methylation data from a brain tumor sample
6229017023_R04C02


title: dkfz_CNS-PNET_15-0294

description:
DNA Methylation data from a brain tumor sample
9741950086_R03C02

value: brainstem


title: dkfz_CNS-PNET_15-0292

description:
DNA Methylation data from a brain tumor sample
9007225017_R03C01

value: frontal lobe


title: dkfz_CNS-PNET_15-0293

description:
DNA Methylation data from a brain tumor sample
9379086129_R01C01

value: parietal/temporal lobe, right


title: dkfz_CNS-PNET_15-0312

description:
DNA Methylation data from a brain tumor sample
9741950111_R04C02

value: F

value: occipital lobe, left


title: dkfz_CNS-PNET_15-0291

description:
DNA Methylation data from a brain tumor sample
9007225035_R04C02


title: dkfz_CNS-PNET_15-0322

description:
DNA Methylation data from a brain tumor sample
9283265033_R01C01

value: thalamic


title: dkfz_CNS-PNET_15-0289

description:
DNA Methylation data from a brain tumor sample
9533774067_R01C01

value: frontal lobe, left


title: dkfz_CNS-PNET_15-0290

description:
DNA Methylation data from a brain tumor sample
9934089047_R01C02


title: dkfz_CNS-PNET_15-0313

description:
DNA Methylation data from a brain tumor sample
7990895142_R06C02

value: parietal lobe, right


title: dkfz_CNS-PNET_15-0287

description:
DNA Methylation data from a brain tumor sample
9534104007_R05C01

value: CNS-PNET

value: unclassifiable

value: spinal (T12/L1)


title: dkfz_CNS-PNET_15-0286

description:
DNA Methylation data from a brain tumor sample
9741950173_R04C01

value: ETMR


title: dkfz_CNS-PNET_15-0285

description:
DNA Methylation data from a brain tumor sample
8622007027_R02C01


title: dkfz_CNS-PNET_15-0296

description:
DNA Methylation data from a brain tumor sample
9444374134_R06C01

value: M

value: hemispheric (NOS)


title: dkfz_CNS-PNET_15-0284

description:
DNA Methylation data from a brain tumor sample
9407210157_R01C02


title: dkfz_CNS-PNET_15-0282

description:
DNA Methylation data from a brain tumor sample
9007217108_R03C01


title: dkfz_CNS-PNET_15-0283

description:
DNA Methylation data from a brain tumor sample
6229017057_R01C02

value: parietal lobe, left


title: dkfz_CNS-PNET_15-0288

description:
DNA Methylation data from a brain tumor sample
8622007066_R04C02


title: dkfz_CNS-PNET_15-0280

description:
DNA Methylation data from a brain tumor sample
9283265033_R03C02

value: occipital lobe


title: dkfz_CNS-PNET_15-0279

description:
DNA Methylation data from a brain tumor sample
9829119072_R03C02

value: spinal (NOS)


title: dkfz_CNS-PNET_15-0278

description:
DNA Methylation data from a brain tumor sample
8667045134_R05C01

value: thalamic, right


title: dkfz_CNS-PNET_15-0277

description:
DNA Methylation data from a brain tumor sample
8622007065_R01C02

value: sylvian fissure, left


title: dkfz_CNS-PNET_15-0276

description:
DNA Methylation data from a brain tumor sample
6929718027_R03C02


title: dkfz_CNS-PNET_15-0274

description:
DNA Methylation data from a brain tumor sample
9296930011_R02C01


title: dkfz_CNS-PNET_15-0275

description:
DNA Methylation data from a brain tumor sample
6969568067_R01C02

value: temporal/parietal lobe


title: dkfz_CNS-PNET_15-0273

description:
DNA Methylation data from a brain tumor sample
9297953053_R03C01

value: temporal lobe


title: dkfz_CNS-PNET_15-0271

description:
DNA Methylation data from a brain tumor sample
8622007068_R03C01

value: F

value: fronto-basal, right


title: dkfz_CNS-PNET_15-0272

description:
DNA Methylation data from a brain tumor sample
9741950038_R04C01

value: frontal lobe


title: dkfz_CNS-PNET_15-0270

description:
DNA Methylation data from a brain tumor sample
8622007027_R04C01

value: thalamic


title: dkfz_CNS-PNET_15-0267

description:
DNA Methylation data from a brain tumor sample
6969568068_R04C02

value: CNS-PNET

value: parietal lobe


title: dkfz_CNS-PNET_15-0269

description:
DNA Methylation data from a brain tumor sample
9741950054_R02C02

value: unclassifiable


title: dkfz_CNS-PNET_15-0265

description:
DNA Methylation data from a brain tumor sample
3998952003_R06C02

value: parietal/temporal lobe


title: dkfz_CNS-PNET_15-0268

description:
DNA Methylation data from a brain tumor sample
9741779119_R02C02

value: M

value: fourth ventricle/brainstem


title: dkfz_CNS-PNET_15-0266

description:
DNA Methylation data from a brain tumor sample
6229017022_R05C02


title: dkfz_CNS-PNET_15-0262

description:
DNA Methylation data from a brain tumor sample
6229017022_R05C01

value: supra-/intrasellar


title: dkfz_CNS-PNET_15-0263

description:
DNA Methylation data from a brain tumor sample
9741950158_R06C02

value: cerebral (NOS)


title: dkfz_CNS-PNET_15-0261

description:
DNA Methylation data from a brain tumor sample
9741950056_R04C02


title: dkfz_CNS-PNET_15-0260

description:
DNA Methylation data from a brain tumor sample
8622007065_R05C01

value: multilocular; spinal, cerebral, and cerebellar lesions


title: dkfz_CNS-PNET_15-0257

description:
DNA Methylation data from a brain tumor sample
9003865058_R05C02

value: ETMR


title: dkfz_CNS-PNET_15-0256

description:
DNA Methylation data from a brain tumor sample
8622007027_R05C01

value: EWS

value: spinal (L5)


title: dkfz_CNS-PNET_15-0253

description:
DNA Methylation data from a brain tumor sample
6929718001_R03C02


title: dkfz_CNS-PNET_15-0251

description:
DNA Methylation data from a brain tumor sample
10005771078_R05C01

value: parietal/temporal lobe, right


title: dkfz_CNS-PNET_15-0254

description:
DNA Methylation data from a brain tumor sample
8622007149_R01C02


title: dkfz_CNS-PNET_15-0252

description:
DNA Methylation data from a brain tumor sample
9379086129_R05C01

value: leptomeningeal craniospinal


title: dkfz_CNS-PNET_15-0255

description:
DNA Methylation data from a brain tumor sample
10005771024_R02C01

value: frontal lobe, right


title: dkfz_CNS-PNET_15-0259

description:
DNA Methylation data from a brain tumor sample
9283265032_R06C02

value: F

value: pineal region


title: dkfz_CNS-PNET_15-0250

description:
DNA Methylation data from a brain tumor sample
9553932010_R05C02

value: CNS-PNET

value: parietal/occipital lobe


title: dkfz_CNS-PNET_15-0258

description:
DNA Methylation data from a brain tumor sample
8622007061_R01C01

value: AT/RT


title: dkfz_CNS-PNET_15-0249

description:
DNA Methylation data from a brain tumor sample
9934089047_R03C01

value: parietal lobe


title: dkfz_CNS-PNET_15-0281

description:
DNA Methylation data from a brain tumor sample
9741950056_R02C02

value: temporal lobe


title: dkfz_CNS-PNET_15-0248

description:
DNA Methylation data from a brain tumor sample
9741950024_R06C01

value: M

value: frontal/temporal lobe


title: dkfz_CNS-PNET_15-0245

description:
DNA Methylation data from a brain tumor sample
6229009095_R03C02

value: unclassifiable

value: occipital lobe


title: dkfz_CNS-PNET_15-0246

description:
DNA Methylation data from a brain tumor sample
8784225140_R01C01

value: PINEAL

value: tectum


title: dkfz_CNS-PNET_15-0247

description:
DNA Methylation data from a brain tumor sample
9741950039_R04C02

value: thalamic


title: dkfz_CNS-PNET_15-0243

description:
DNA Methylation data from a brain tumor sample
8622007068_R04C01


title: dkfz_CNS-PNET_15-0241

description:
DNA Methylation data from a brain tumor sample
8784225140_R05C02


title: dkfz_CNS-PNET_15-0240

description:
DNA Methylation data from a brain tumor sample
8622007149_R02C02


title: dkfz_CNS-PNET_15-0264

description:
DNA Methylation data from a brain tumor sample
9878820140_R05C01

value: ETMR

value: spinal (L5/S1)


title: dkfz_CNS-PNET_15-0238

description:
DNA Methylation data from a brain tumor sample
6929718020_R05C02

value: occipital/parietal lobe


title: dkfz_CNS-PNET_15-0237

description:
DNA Methylation data from a brain tumor sample
9007225026_R04C02

value: F

value: frontal lobe


title: dkfz_CNS-PNET_15-0236

description:
DNA Methylation data from a brain tumor sample
9741950173_R02C01

value: CNS-PNET


title: dkfz_CNS-PNET_15-0235

description:
DNA Methylation data from a brain tumor sample
3999543047_R06C02

value: frontal/temporal lobe, left


title: dkfz_CNS-PNET_15-0233

description:
DNA Methylation data from a brain tumor sample
6929718027_R06C02

value: frontal/temporal lobe, right


title: dkfz_CNS-PNET_15-0234

description:
DNA Methylation data from a brain tumor sample
9370847051_R02C02

value: temporal lobe, right


title: dkfz_CNS-PNET_15-0232

description:
DNA Methylation data from a brain tumor sample
6969568067_R02C01


title: dkfz_CNS-PNET_15-0239

description:
DNA Methylation data from a brain tumor sample
9741950039_R01C02


title: dkfz_CNS-PNET_15-0231

description:
DNA Methylation data from a brain tumor sample
8622007066_R01C01

value: frontal lobe, right


title: dkfz_CNS-PNET_15-0229

description:
DNA Methylation data from a brain tumor sample
3998919097_R06C02

value: M

value: parieto-central


title: dkfz_CNS-PNET_15-0227

description:
DNA Methylation data from a brain tumor sample
9407210157_R02C01

value: cerebral (NOS)


title: dkfz_CNS-PNET_15-0228

description:
DNA Methylation data from a brain tumor sample
9297949146_R05C02


title: dkfz_CNS-PNET_15-0226

description:
DNA Methylation data from a brain tumor sample
6247004023_R01C02

value: unclassifiable


title: dkfz_CNS-PNET_15-0225

description:
DNA Methylation data from a brain tumor sample
3998909025_R06C01

value: hemispheric (NOS)


title: dkfz_CNS-PNET_15-0242

description:
DNA Methylation data from a brain tumor sample
6229017057_R04C02


title: dkfz_CNS-PNET_15-0223

description:
DNA Methylation data from a brain tumor sample
8622007061_R04C02

value: frontal/parietal lobe, left


title: dkfz_CNS-PNET_15-0222

description:
DNA Methylation data from a brain tumor sample
8622007068_R05C01

value: parietal/occipital lobe, right


title: dkfz_CNS-PNET_15-0221

description:
DNA Methylation data from a brain tumor sample
6229017022_R03C01

value: intraventricular, left


title: dkfz_CNS-PNET_15-0220

description:
DNA Methylation data from a brain tumor sample
8622007069_R06C02

value: temporal lobe, left


title: dkfz_CNS-PNET_15-0224

description:
DNA Methylation data from a brain tumor sample
9007225026_R04C01

value: temporal/parietal lobe


title: dkfz_CNS-PNET_15-0244

description:
DNA Methylation data from a brain tumor sample
6229017022_R03C02

value: parietal/parasaggital


title: dkfz_CNS-PNET_15-0218

description:
DNA Methylation data from a brain tumor sample
8622007068_R06C01

value: temporal lobe


title: dkfz_CNS-PNET_15-0216

description:
DNA Methylation data from a brain tumor sample
6929718026_R04C01

value: CNS-PNET


title: dkfz_CNS-PNET_15-0217

description:
DNA Methylation data from a brain tumor sample
9007225017_R06C02

value: ETMR

value: F

value: parietal/occipital lobe


title: dkfz_CNS-PNET_15-0215

description:
DNA Methylation data from a brain tumor sample
8784241104_R01C02

value: temporal/parietal lobe, left


title: dkfz_CNS-PNET_15-0213

description:
DNA Methylation data from a brain tumor sample
8622007027_R01C01

value: AT/RT

value: M

value: brainstem/cerebellopontine angle


title: dkfz_CNS-PNET_15-0212

description:
DNA Methylation data from a brain tumor sample
6969568075_R02C02

value: lateral ventricle, left


title: dkfz_CNS-PNET_15-0214

description:
DNA Methylation data from a brain tumor sample
8622007065_R06C02

value: unclassifiable


title: dkfz_CNS-PNET_15-0211

description:
DNA Methylation data from a brain tumor sample
10005771024_R01C01

value: thalamic, left


title: dkfz_CNS-PNET_15-0210

description:
DNA Methylation data from a brain tumor sample
9741950111_R03C02

value: parietal lobe, right


title: dkfz_CNS-PNET_15-0208

description:
DNA Methylation data from a brain tumor sample
6929718057_R01C01

value: frontal lobe


title: dkfz_CNS-PNET_15-0209

description:
DNA Methylation data from a brain tumor sample
6929718001_R03C01


title: dkfz_CNS-PNET_15-0206

description:
DNA Methylation data from a brain tumor sample
6929718027_R02C02

value: PINEAL


title: dkfz_CNS-PNET_15-0230

description:
DNA Methylation data from a brain tumor sample
6229017022_R04C01

value: intraventricular


title: dkfz_CNS-PNET_15-0205

description:
DNA Methylation data from a brain tumor sample
8622007061_R03C01

value: frontal/parietal lobe, left


title: dkfz_CNS-PNET_15-0204

description:
DNA Methylation data from a brain tumor sample
9407210157_R03C02

value: parietal lobe


title: dkfz_CNS-PNET_15-0207

description:
DNA Methylation data from a brain tumor sample
8622007061_R05C01

value: CNS-PNET

value: parietal lobe, left


title: dkfz_CNS-PNET_15-0203

description:
DNA Methylation data from a brain tumor sample
8622007097_R05C01

value: frontal lobe, left


title: dkfz_CNS-PNET_15-0202

description:
DNA Methylation data from a brain tumor sample
9741950086_R01C01


title: dkfz_CNS-PNET_15-0200

description:
DNA Methylation data from a brain tumor sample
9741950008_R06C01

value: F

value: frontal lobe, right


title: dkfz_CNS-PNET_15-0219

description:
DNA Methylation data from a brain tumor sample
9741950056_R06C02

value: temporal lobe


title: dkfz_CNS-PNET_15-0191

description:
DNA Methylation data from a brain tumor sample
8622007068_R01C02

value: ETMR

value: central region, bilateral


title: dkfz_CNS-PNET_15-0192

description:
DNA Methylation data from a brain tumor sample
9741950038_R04C02

value: M


title: dkfz_CNS-PNET_15-0196

description:
DNA Methylation data from a brain tumor sample
9980102125_R05C01

value: supratentorial (NOS)


title: dkfz_CNS-PNET_15-0198

description:
DNA Methylation data from a brain tumor sample
6229017023_R02C01


title: dkfz_CNS-PNET_15-0193

description:
DNA Methylation data from a brain tumor sample
9007225035_R03C02

value: AT/RT


title: dkfz_CNS-PNET_15-0194

description:
DNA Methylation data from a brain tumor sample
9283265033_R04C01

value: pineal region


title: dkfz_CNS-PNET_15-0199

description:
DNA Methylation data from a brain tumor sample
6969568042_R06C01


title: dkfz_CNS-PNET_15-0197

description:
DNA Methylation data from a brain tumor sample
8622007149_R03C02


title: dkfz_CNS-PNET_15-0195

description:
DNA Methylation data from a brain tumor sample
8622007067_R02C02

value: frontal/temporal lobe, left


title: dkfz_CNS-PNET_15-0190

description:
DNA Methylation data from a brain tumor sample
6229017023_R03C02


title: dkfz_CNS-PNET_15-0188

description:
DNA Methylation data from a brain tumor sample
6929718020_R06C02

value: unclassifiable

value: frontal lobe


title: dkfz_CNS-PNET_15-0184

description:
DNA Methylation data from a brain tumor sample
9007225017_R02C02


title: dkfz_CNS-PNET_15-0187

description:
DNA Methylation data from a brain tumor sample
9553932002_R06C02

value: spinal (T8)


title: dkfz_CNS-PNET_15-0185

description:
DNA Methylation data from a brain tumor sample
9297949146_R03C02

value: PINEAL

value: hypothalamic, leptomeningeal spread


title: dkfz_CNS-PNET_15-0182

description:
DNA Methylation data from a brain tumor sample
8784225140_R06C02

value: CNS-PNET

value: parietal lobe, left


title: dkfz_CNS-PNET_15-0181

description:
DNA Methylation data from a brain tumor sample
9969477043_R04C02

value: F


title: dkfz_CNS-PNET_15-0180

description:
DNA Methylation data from a brain tumor sample
3998952004_R06C02

value: parietal/temporal lobe


title: dkfz_CNS-PNET_15-0179

description:
DNA Methylation data from a brain tumor sample
3998909025_R01C01

value: occipital lobe


title: dkfz_CNS-PNET_15-0183

description:
DNA Methylation data from a brain tumor sample
6229017023_R05C01


title: dkfz_CNS-PNET_15-0178

description:
DNA Methylation data from a brain tumor sample
9741950173_R05C01

value: parietal lobe


title: dkfz_CNS-PNET_15-0176

description:
DNA Methylation data from a brain tumor sample
9297949146_R04C02

value: lateral ventricle


title: dkfz_CNS-PNET_15-0175

description:
DNA Methylation data from a brain tumor sample
6247004027_R06C02

value: M

value: third ventricle


title: dkfz_CNS-PNET_15-0201

description:
DNA Methylation data from a brain tumor sample
9407210157_R01C01


title: dkfz_CNS-PNET_15-0174

description:
DNA Methylation data from a brain tumor sample
9741950173_R02C02


title: dkfz_CNS-PNET_15-0177

description:
DNA Methylation data from a brain tumor sample
3998909025_R05C01

value: hemispheric (NOS)


title: dkfz_CNS-PNET_15-0173

description:
DNA Methylation data from a brain tumor sample
6229017057_R02C01


title: dkfz_CNS-PNET_15-0172

description:
DNA Methylation data from a brain tumor sample
6929689164_R05C02

value: temporal/occipital lobe, left


title: dkfz_CNS-PNET_15-0171

description:
DNA Methylation data from a brain tumor sample
9283265033_R06C02


title: dkfz_CNS-PNET_15-0170

description:
DNA Methylation data from a brain tumor sample
8622007067_R02C01

value: temporal lobe


title: dkfz_CNS-PNET_15-0189

description:
DNA Methylation data from a brain tumor sample
9003865025_R04C02

value: ETMR

value: thalamic, left


title: dkfz_CNS-PNET_15-0169

description:
DNA Methylation data from a brain tumor sample
3998909025_R01C02


title: dkfz_CNS-PNET_15-0168

description:
DNA Methylation data from a brain tumor sample
7497398016_R06C02


title: dkfz_CNS-PNET_15-0167

description:
DNA Methylation data from a brain tumor sample
9993943118_R02C02


title: dkfz_CNS-PNET_15-0163

description:
DNA Methylation data from a brain tumor sample
9741950159_R02C02

value: temporal/parietal lobe


title: dkfz_CNS-PNET_15-0166

description:
DNA Methylation data from a brain tumor sample
9007217108_R05C02


title: dkfz_CNS-PNET_15-0186

description:
DNA Methylation data from a brain tumor sample
6929718020_R03C02

value: frontal/temporal lobe


title: dkfz_CNS-PNET_15-0164

description:
DNA Methylation data from a brain tumor sample
3998909026_R01C01


title: dkfz_CNS-PNET_15-0165

description:
DNA Methylation data from a brain tumor sample
8622007066_R05C01

value: duraadherent (NOS)


title: dkfz_CNS-PNET_15-0162

description:
DNA Methylation data from a brain tumor sample
9007225017_R04C01

value: CNS-PNET

value: parietal/occipital lobe


title: dkfz_CNS-PNET_15-0160

description:
DNA Methylation data from a brain tumor sample
6247004023_R04C01

value: unclassifiable

value: F


title: dkfz_CNS-PNET_15-0159

description:
DNA Methylation data from a brain tumor sample
9283265033_R03C01

value: peduncular


title: dkfz_CNS-PNET_15-0157

description:
DNA Methylation data from a brain tumor sample
9829119256_R01C02

value: frontal lobe


title: dkfz_CNS-PNET_15-0156

description:
DNA Methylation data from a brain tumor sample
8622007061_R04C01

value: parietal/occipital lobe, right


title: dkfz_CNS-PNET_15-0153

description:
DNA Methylation data from a brain tumor sample
3998952003_R05C02


title: dkfz_CNS-PNET_15-0155

description:
DNA Methylation data from a brain tumor sample
6969568042_R03C02

value: M


title: dkfz_CNS-PNET_15-0152

description:
DNA Methylation data from a brain tumor sample
8784241018_R02C02


title: dkfz_CNS-PNET_15-0154

description:
DNA Methylation data from a brain tumor sample
6229017057_R02C02


title: dkfz_CNS-PNET_15-0148

description:
DNA Methylation data from a brain tumor sample
9003865025_R01C02

value: spinal (NOS)


title: dkfz_CNS-PNET_15-0145

description:
DNA Methylation data from a brain tumor sample
8622007130_R04C01

value: AT/RT


title: dkfz_CNS-PNET_15-0150

description:
DNA Methylation data from a brain tumor sample
9003865019_R06C02


title: dkfz_CNS-PNET_15-0149

description:
DNA Methylation data from a brain tumor sample
8622007069_R04C01


title: dkfz_CNS-PNET_15-0144

description:
DNA Methylation data from a brain tumor sample
3998523019_R02C01

value: parietal lobe, right


title: dkfz_CNS-PNET_15-0151

description:
DNA Methylation data from a brain tumor sample
3998919097_R05C02

value: fronto-lateral


title: dkfz_CNS-PNET_15-0147

description:
DNA Methylation data from a brain tumor sample
8622007061_R05C02

value: frontal lobe, right


title: dkfz_CNS-PNET_15-0146

description:
DNA Methylation data from a brain tumor sample
6229017023_R06C02


title: dkfz_CNS-PNET_15-0143

description:
DNA Methylation data from a brain tumor sample
9741950086_R05C02

value: cerebral (NOS)


title: dkfz_CNS-PNET_15-0161

description:
DNA Methylation data from a brain tumor sample
8622007149_R05C01


title: dkfz_CNS-PNET_15-0140

description:
DNA Methylation data from a brain tumor sample
9968646117_R03C02

value: PXA

value: temporal lobe


title: dkfz_CNS-PNET_15-0139

description:
DNA Methylation data from a brain tumor sample
6229017023_R05C02


title: dkfz_CNS-PNET_15-0142

description:
DNA Methylation data from a brain tumor sample
9296930011_R01C01

value: ETMR


title: dkfz_CNS-PNET_15-0138

description:
DNA Methylation data from a brain tumor sample
9741950054_R06C02

value: CNS-PNET


title: dkfz_CNS-PNET_15-0137

description:
DNA Methylation data from a brain tumor sample
8622007097_R06C01

value: nucleus caudatus, left


title: dkfz_CNS-PNET_15-0135

description:
DNA Methylation data from a brain tumor sample
9379086129_R02C01

value: parietal/occipital lobe


title: dkfz_CNS-PNET_15-0136

description:
DNA Methylation data from a brain tumor sample
8622007149_R04C01

value: unclassifiable


title: dkfz_CNS-PNET_15-0133

description:
DNA Methylation data from a brain tumor sample
9741950120_R05C01

value: parietal lobe, left


title: dkfz_CNS-PNET_15-0141

description:
DNA Methylation data from a brain tumor sample
9007225026_R06C02

value: MNG

value: temporal lobe, right


title: dkfz_CNS-PNET_15-0131

description:
DNA Methylation data from a brain tumor sample
9407210157_R05C01

value: M

value: frontal lobe


title: dkfz_CNS-PNET_15-0132

description:
DNA Methylation data from a brain tumor sample
8622007130_R03C01

value: F

value: occipital lobe


title: dkfz_CNS-PNET_15-0130

description:
DNA Methylation data from a brain tumor sample
7990895142_R06C01


title: dkfz_CNS-PNET_15-0158

description:
DNA Methylation data from a brain tumor sample
9003865025_R03C02

value: peduncular


title: dkfz_CNS-PNET_15-0127

description:
DNA Methylation data from a brain tumor sample
6929718027_R05C02

value: PINEAL


title: dkfz_CNS-PNET_15-0129

description:
DNA Methylation data from a brain tumor sample
8784241104_R03C01

value: temporal lobe, left


title: dkfz_CNS-PNET_15-0126

description:
DNA Methylation data from a brain tumor sample
9969477079_R05C02


title: dkfz_CNS-PNET_15-0125

description:
DNA Methylation data from a brain tumor sample
9373551039_R02C01


title: dkfz_CNS-PNET_15-0128

description:
DNA Methylation data from a brain tumor sample
8622007130_R02C01

value: sellar


title: dkfz_CNS-PNET_15-0123

description:
DNA Methylation data from a brain tumor sample
9741950038_R06C02

value: frontal/temporal lobe


title: dkfz_CNS-PNET_15-0121

description:
DNA Methylation data from a brain tumor sample
9741950074_R04C01

value: parietal lobe


title: dkfz_CNS-PNET_15-0122

description:
DNA Methylation data from a brain tumor sample
10005771024_R04C01

value: CNS-PNET

value: ETMR

value: frontal lobe, right


title: dkfz_CNS-PNET_15-0120

description:
DNA Methylation data from a brain tumor sample
8622007070_R02C01

value: unclassifiable


title: dkfz_CNS-PNET_15-0118

description:
DNA Methylation data from a brain tumor sample
7497398022_R05C01


title: dkfz_CNS-PNET_15-0117

description:
DNA Methylation data from a brain tumor sample
9003865025_R06C01

value: frontal lobe, bilateral


title: dkfz_CNS-PNET_15-0116

description:
DNA Methylation data from a brain tumor sample
9533774041_R06C01


title: dkfz_CNS-PNET_15-0134

description:
DNA Methylation data from a brain tumor sample
9007225017_R01C02

value: AT/RT

value: temporal lobe


title: dkfz_CNS-PNET_15-0115

description:
DNA Methylation data from a brain tumor sample
9007225003_R06C02

value: M


title: dkfz_CNS-PNET_15-0114

description:
DNA Methylation data from a brain tumor sample
3998909033_R03C01


title: dkfz_CNS-PNET_15-0113

description:
DNA Methylation data from a brain tumor sample
3998919098_R02C01


title: dkfz_CNS-PNET_15-0112

description:
DNA Methylation data from a brain tumor sample
9611519028_R04C01

value: frontal lobe, left


title: dkfz_CNS-PNET_15-0111

description:
DNA Methylation data from a brain tumor sample
3998909025_R03C01

value: frontal lobe


title: dkfz_CNS-PNET_15-0110

description:
DNA Methylation data from a brain tumor sample
9968646163_R05C02


title: dkfz_CNS-PNET_15-0109

description:
DNA Methylation data from a brain tumor sample
6229017023_R03C01


title: dkfz_CNS-PNET_15-0107

description:
DNA Methylation data from a brain tumor sample
8622007061_R01C02


title: dkfz_CNS-PNET_15-0105

description:
DNA Methylation data from a brain tumor sample
9007225035_R05C02


title: dkfz_CNS-PNET_15-0103

description:
DNA Methylation data from a brain tumor sample
6969568075_R05C01

value: temporal/parietal lobe


title: dkfz_CNS-PNET_15-0106

description:
DNA Methylation data from a brain tumor sample
10005771148_R01C02


title: dkfz_CNS-PNET_15-0108

description:
DNA Methylation data from a brain tumor sample
9283265033_R02C01

value: frontal/parietal lobe


title: dkfz_CNS-PNET_15-0104

description:
DNA Methylation data from a brain tumor sample
9007225026_R06C01

value: EWS

value: F

value: spinal (L2/3)


title: dkfz_CNS-PNET_15-0102

description:
DNA Methylation data from a brain tumor sample
9553932054_R02C02

value: infra-/supratentorial (no cerebellar lesion)


title: dkfz_CNS-PNET_15-0101

description:
DNA Methylation data from a brain tumor sample
9007225026_R03C02

value: fourth ventricle


title: dkfz_CNS-PNET_15-0100

description:
DNA Methylation data from a brain tumor sample
9007225017_R05C02

value: CNS-PNET

value: supratentorial (NOS)


title: dkfz_CNS-PNET_15-0097

description:
DNA Methylation data from a brain tumor sample
8622007149_R03C01


title: dkfz_CNS-PNET_15-0096

description:
DNA Methylation data from a brain tumor sample
8784241116_R05C01

value: frontal/temporal lobe, right and pineal region


title: dkfz_CNS-PNET_15-0124

description:
DNA Methylation data from a brain tumor sample
6929689068_R06C01

value: spinal (NOS)


title: dkfz_CNS-PNET_15-0099

description:
DNA Methylation data from a brain tumor sample
8622007066_R02C01

value: ETMR


title: dkfz_CNS-PNET_15-0095

description:
DNA Methylation data from a brain tumor sample
9379086124_R05C02


title: dkfz_CNS-PNET_15-0093

description:
DNA Methylation data from a brain tumor sample
8622007149_R06C01


title: dkfz_CNS-PNET_15-0094

description:
DNA Methylation data from a brain tumor sample
9379086124_R06C02

value: pons/mesencephalon


title: dkfz_CNS-PNET_15-0092

description:
DNA Methylation data from a brain tumor sample
9968646117_R02C02

value: unclassifiable

value: parietal lobe