title: Tuberculosis 159


title: Tuberculosis 158

status: Public on Jun 01 2019

type: genomic

city: Beijing

first: Yong-Biao

last: Zhang

state: Select a State or Province

address: Beichen west road 1#

country: China

institute: Beijing Institute of Genomics

description: Genomic DNAs extracted from whole blood were genotyped using Illumina human Omni-zhonghua chips

hyb_protocol: according to the manufacturer’s specifications

scan_protocol: chips were scanned using iScan instrument

data_processing: We used Genomestudio to call the genotypes of SNPs, and performed association study using plink.

label: biotin

molecule: genomic DNA

organism: Homo sapiens

source_name: Tuberculosis

growth_protocol: Extraction of genomic DNA from blood was performed using proteinase K and repeated phenol-chloroform extraction.

extract_protocol: genomic DNAs were extracted with DNA-extraction kits (Tiangen Biotech, Beijing, China)

treatment_protocol: the whole-blood was stored in -80 refrigerator

tag: tissue

value: Blood


title: PBMC2.CC86JANXX.SM2_011818p3_G6

type: SRA

city: Cambridge

first: Aviv

last: Regev

state: MA

address: 415 Main Street

department: Klarman Cell Observatory

country: USA

institute: Broad Institute

description:
scRNA-seq
full-length
pbmc_hg38_count_matrix.mtx, pbmc_hg38_gene.tsv, pbmc_hg38_cell.tsv

library_source: transcriptomic

data_processing:
For scRNA-seq and snRNA-seq data, scumi v0.1.0 (https://bitbucket.org/jerry00/scumi-dev/src/master/) was used to produce cell by gene sparse matrices (UMI count matrices for 3'-end methods and read count matrices for Smart-seq2). More specifically, STAR v2.6.1a was used for alignment except for Smart-seq2 and CEL-Seq2 data where HISAT v2.0.5 was used. featureCounts from the Subread package, v1.6.2 was used to tag each alignment with a gene tag. For bulk RNA-Seq data, reads were mapped to the reference genomes using Bowtie v0.12.9, and further quantified by RSEM v1.3.0 to generate transcripts per million values.
Genome_build: scRNA-seq data: a merged hg19 and mm10 geome for human and mouse mixture datasets, hg38 (GRCh38) for human PBMCs, and mm10 for mouse cortex data; bulk RNA-Seq data, hg38 (GRCh38) for human data and mm10 for mouse data
Supplementary_files_format_and_content: scRNA-seq data: mtx, a gene by cell count matrix in the sparse matrix market format
Supplementary_files_format_and_content: scRNA-seq data: cell.tsv, cell names (colname names of the sparse count matrix)
Supplementary_files_format_and_content: scRNA-seq data: gene.tsv, gene names (row names of the sparse count matrix)
Supplementary_files_format_and_content: Bulk RNA-Seq data: TPM_bulk.tsv, tab-delimited text files of transcripts per million measurements of genes in each sample
Supplementary_files_format_and_content: mixture_hg19_mm10_cell.tsv :Cell names (colname names of the sparse count matrix)
Supplementary_files_format_and_content: mixture_hg19_mm10_count_matrix.mtx :A gene by cell count sparse matrix in the matrix market format
Supplementary_files_format_and_content: mixture_hg19_mm10_gene.tsv :Gene names (row names of the sparse count matrix)
Supplementary_files_format_and_content: pbmc_hg38_cell.tsv :Cell names (colname names of the sparse count matrix)
Supplementary_files_format_and_content: pbmc_hg38_count_matrix.mtx :A gene by cell count matrix in the matrix market format
Supplementary_files_format_and_content: pbmc_hg38_gene.tsv :Gene names (row names of the sparse count matrix)
Supplementary_files_format_and_content: cortex_mm10_cell.tsv :Cell names (colname names of the sparse count matrix)
Supplementary_files_format_and_content: cortex_mm10_count_matrix.mtx :A gene by cell count sparse matrix in the matrix market format
Supplementary_files_format_and_content: cortex_mm10_gene.tsv :Gene names (row names of the sparse count matrix)
Supplementary_files_format_and_content: HEK293_PBMC_TPM_bulk.tsv :A matrix of transcripts per million measurements
Supplementary_files_format_and_content: NIH3T3_cortex_TPM_bulk.tsv :A matrix of transcripts per million measurements

molecule: total RNA

source_name: Peripheral blood mononuclear cell

extract_protocol:
Total RNA from bulk samples was extracted using Quick-RNA Mini Prep (Zymo Research) following the vendor protocol with a DNase treatment step
For library construction methods, see SAMPLES, description: Library Construction field. For details see the Methods section in the manuscript

tag: Sex

value: Female

tag: library construction


title: PBMC2.CC86JANXX.SM2_011818p3_G11


title: Tuberculosis 157

label_protocol: according to the manufacturer’s specifications


title: PBMC2.CC86JANXX.SM2_011818p3_F5


title: Tuberculosis 167


title: PBMC2.CC86JANXX.SM2_011818p3_F4


title: Tuberculosis 154


title: Cortex1.CCJ15ANXX.SM2_042518p4_H12

description:
scRNA-seq
full-length
cortex_mm10_count_matrix.mtx, cortex_mm10_gene.tsv, cortex_mm10_cell.tsv

organism: Mus musculus

source_name: Cortex

value: Male

tag: age

value: one month

tag: strain


title: Cortex1.CCJ15ANXX.SM2_042518p4_H11


title: Tuberculosis 152


title: Cortex1.CCJ15ANXX.SM2_042518p4_H3


title: PBMC2.CC86JANXX.SM2_011818p3_F3


title: Tuberculosis 156


title: PBMC2.CC86JANXX.SM2_011818p3_F2


title: Cortex1.CCJ15ANXX.SM2_042518p4_H10


title: Tuberculosis 151


title: PBMC2.CC86JANXX.SM2_011818p3_F1


title: Tuberculosis 150


title: Cortex1.CCJ15ANXX.SM2_042518p4_G9


title: Tuberculosis 155


title: Cortex1.CCJ15ANXX.SM2_042518p4_G8


title: Tuberculosis 148


title: Cortex1.CCJ15ANXX.SM2_042518p4_H1


title: Tuberculosis 147


title: PBMC2.CC86JANXX.SM2_011818p3_F12


title: PBMC2.CC86JANXX.SM2_011818p3_F11


title: Cortex1.CCJ15ANXX.SM2_042518p4_H2


title: Tuberculosis 146


title: Cortex1.CCJ15ANXX.SM2_042518p4_G7


title: PBMC2.CC86JANXX.SM2_011818p3_F10


title: Tuberculosis 144


title: Tuberculosis 145


title: Tuberculosis 153


title: Cortex1.CCJ15ANXX.SM2_042518p4_G6


title: Tuberculosis 143


title: PBMC2.CC86JANXX.SM2_011818p3_E9


title: PBMC2.CC86JANXX.SM2_011818p3_E8


title: Tuberculosis 142


title: PBMC2.CC86JANXX.SM2_011818p3_E7


title: Tuberculosis 141


title: Cortex1.CCJ15ANXX.SM2_042518p4_G5


title: Tuberculosis 138


title: Tuberculosis 136


title: Cortex1.CCJ15ANXX.SM2_042518p4_G3


title: Tuberculosis 134


title: Tuberculosis 135


title: Tuberculosis 139


title: Cortex1.CCJ15ANXX.SM2_042518p4_G1


title: Tuberculosis 149


title: PBMC2.CC86JANXX.SM2_011818p3_E4


title: PBMC2.CC86JANXX.SM2_011818p3_E5


title: Tuberculosis 137


title: Tuberculosis 133


title: Cortex1.CCJ15ANXX.SM2_042518p4_G2


title: Tuberculosis 130


title: Tuberculosis 132


title: PBMC2.CC86JANXX.SM2_011818p3_E3


title: Cortex1.CCJ15ANXX.SM2_042518p4_G12


title: Tuberculosis 140


title: Cortex1.CCJ15ANXX.SM2_042518p4_G4


title: Tuberculosis 129


title: Tuberculosis 128


title: Cortex1.CCJ15ANXX.SM2_042518p4_G11


title: PBMC2.CC86JANXX.SM2_011818p3_E6


title: Tuberculosis 127


title: PBMC2.CC86JANXX.SM2_011818p3_E2


title: Cortex1.CCJ15ANXX.SM2_042518p4_G10


title: Tuberculosis 126


title: Cortex1.CCJ15ANXX.SM2_042518p4_F9


title: PBMC2.CC86JANXX.SM2_011818p3_E1


title: Tuberculosis 124


title: Tuberculosis 131


title: Tuberculosis 123


title: Cortex1.CCJ15ANXX.SM2_042518p4_F8


title: Tuberculosis 122


title: Tuberculosis 121


title: PBMC2.CC86JANXX.SM2_011818p3_E12


title: Cortex1.CCJ15ANXX.SM2_042518p4_F7


title: Tuberculosis 119


title: PBMC2.CC86JANXX.SM2_011818p3_E11


title: Cortex1.CCJ15ANXX.SM2_042518p4_F5


title: PBMC2.CC86JANXX.SM2_011818p3_E10


title: Cortex1.CCJ15ANXX.SM2_042518p4_F6


title: Tuberculosis 120


title: PBMC2.CC86JANXX.SM2_011818p3_D9


title: PBMC2.CC86JANXX.SM2_011818p3_D8


title: Tuberculosis 116


title: Tuberculosis 117


title: Tuberculosis 118


title: Tuberculosis 125


title: PBMC2.CC86JANXX.SM2_011818p3_D7


title: Tuberculosis 114


title: Cortex1.CCJ15ANXX.SM2_042518p4_F4


title: PBMC2.CC86JANXX.SM2_011818p3_D6


title: Tuberculosis 115


title: Tuberculosis 110


title: Tuberculosis 109


title: PBMC2.CC86JANXX.SM2_011818p3_D5


title: Tuberculosis 107


title: Tuberculosis 113


title: Tuberculosis 112


title: Cortex1.CCJ15ANXX.SM2_042518p4_F3


title: Cortex1.CCJ15ANXX.SM2_042518p4_F2


title: Tuberculosis 111


title: Tuberculosis 105


title: Cortex1.CCJ15ANXX.SM2_042518p4_F1


title: PBMC2.CC86JANXX.SM2_011818p3_D4


title: Tuberculosis 104


title: Tuberculosis 108


title: PBMC2.CC86JANXX.SM2_011818p3_D3


title: Tuberculosis 103


title: Tuberculosis 100


title: PBMC2.CC86JANXX.SM2_011818p3_D1


title: PBMC2.CC86JANXX.SM2_011818p3_D2


title: Tuberculosis 99


title: PBMC2.CC86JANXX.SM2_011818p3_D12


title: Cortex1.CCJ15ANXX.SM2_042518p4_F10


title: Tuberculosis 102


title: PBMC2.CC86JANXX.SM2_011818p3_D11


title: Tuberculosis 97


title: Tuberculosis 98


title: Cortex1.CCJ15ANXX.SM2_042518p4_F11


title: Tuberculosis 106


title: Cortex1.CCJ15ANXX.SM2_042518p4_F12


title: PBMC2.CC86JANXX.SM2_011818p3_D10


title: Cortex1.CCJ15ANXX.SM2_042518p4_E6


title: PBMC2.CC86JANXX.SM2_011818p3_C9


title: Cortex1.CCJ15ANXX.SM2_042518p4_E5


title: Cortex1.CCJ15ANXX.SM2_042518p4_E8


title: Tuberculosis 101


title: Tuberculosis 94


title: Tuberculosis 96


title: Tuberculosis 95


title: Cortex1.CCJ15ANXX.SM2_042518p4_E9


title: Tuberculosis 92


title: Tuberculosis 91


title: Tuberculosis 89


title: Cortex1.CCJ15ANXX.SM2_042518p4_E3


title: PBMC2.CC86JANXX.SM2_011818p3_C6


title: Tuberculosis 87


title: Tuberculosis 88


title: Tuberculosis 86


title: Tuberculosis 90


title: Cortex1.CCJ15ANXX.SM2_042518p4_E7


title: PBMC2.CC86JANXX.SM2_011818p3_C8


title: Cortex1.CCJ15ANXX.SM2_042518p4_E2


title: PBMC2.CC86JANXX.SM2_011818p3_C5


title: Cortex1.CCJ15ANXX.SM2_042518p4_E1


title: PBMC2.CC86JANXX.SM2_011818p3_C7


title: PBMC2.CC86JANXX.SM2_011818p3_C3


title: Tuberculosis 93


title: Tuberculosis 82


title: Cortex1.CCJ15ANXX.SM2_042518p4_E11


title: Cortex1.CCJ15ANXX.SM2_042518p4_E4


title: Tuberculosis 85


title: PBMC2.CC86JANXX.SM2_011818p3_C2


title: PBMC2.CC86JANXX.SM2_011818p3_C4


title: Tuberculosis 83


title: Tuberculosis 79


title: Tuberculosis 80


title: Tuberculosis 81


title: Cortex1.CCJ15ANXX.SM2_042518p4_E12


title: Tuberculosis 78


title: Cortex1.CCJ15ANXX.SM2_042518p4_E10


title: Tuberculosis 77


title: Cortex1.CCJ15ANXX.SM2_042518p4_D9


title: PBMC2.CC86JANXX.SM2_011818p3_C12


title: Tuberculosis 75


title: Tuberculosis 76


title: Tuberculosis 84


title: Cortex1.CCJ15ANXX.SM2_042518p4_D8


title: PBMC2.CC86JANXX.SM2_011818p3_C11


title: PBMC2.CC86JANXX.SM2_011818p3_C10


title: Tuberculosis 72


title: Cortex1.CCJ15ANXX.SM2_042518p4_D7


title: Tuberculosis 70


title: Tuberculosis 71


title: Cortex1.CCJ15ANXX.SM2_042518p4_D6


title: Tuberculosis 69


title: Tuberculosis 74


title: Tuberculosis 73


title: Tuberculosis 68


title: PBMC2.CC86JANXX.SM2_011818p3_C1


title: Cortex1.CCJ15ANXX.SM2_042518p4_D5


title: PBMC2.CC86JANXX.SM2_011818p3_B9


title: PBMC2.CC86JANXX.SM2_011818p3_B8


title: PBMC2.CC86JANXX.SM2_011818p3_B7


title: Tuberculosis 66


title: Tuberculosis 64


title: Tuberculosis 63


title: Tuberculosis 65


title: Cortex1.CCJ15ANXX.SM2_042518p4_D3


title: Tuberculosis 67


title: Cortex1.CCJ15ANXX.SM2_042518p4_D2


title: Tuberculosis 61


title: Tuberculosis 62


title: PBMC2.CC86JANXX.SM2_011818p3_B5


title: Cortex1.CCJ15ANXX.SM2_042518p4_D1


title: Tuberculosis 60


title: Tuberculosis 59


title: Cortex1.CCJ15ANXX.SM2_042518p4_D12


title: PBMC2.CC86JANXX.SM2_011818p3_B4


title: PBMC2.CC86JANXX.SM2_011818p3_B3


title: Tuberculosis 58


title: Tuberculosis 57


title: Tuberculosis 56


title: Cortex1.CCJ15ANXX.SM2_042518p4_D11


title: Cortex1.CCJ15ANXX.SM2_042518p4_D10


title: Tuberculosis 55


title: Cortex1.CCJ15ANXX.SM2_042518p4_D4


title: PBMC2.CC86JANXX.SM2_011818p3_B1


title: Cortex1.CCJ15ANXX.SM2_042518p4_C9


title: PBMC2.CC86JANXX.SM2_011818p3_B2


title: Tuberculosis 53


title: PBMC2.CC86JANXX.SM2_011818p3_B6


title: Tuberculosis 54


title: Tuberculosis 52


title: PBMC2.CC86JANXX.SM2_011818p3_B12


title: Tuberculosis 50


title: PBMC2.CC86JANXX.SM2_011818p3_B11


title: Tuberculosis 49


title: Tuberculosis 51


title: Tuberculosis 48


title: Tuberculosis 47


title: PBMC2.CC86JANXX.SM2_011818p3_B10


title: PBMC2.CC86JANXX.SM2_011818p3_A9


title: Cortex1.CCJ15ANXX.SM2_042518p4_C6


title: Tuberculosis 45


title: Cortex1.CCJ15ANXX.SM2_042518p4_C4


title: Tuberculosis 43


title: PBMC2.CC86JANXX.SM2_011818p3_A7


title: Tuberculosis 44


title: PBMC2.CC86JANXX.SM2_011818p3_A8


title: Tuberculosis 46


title: Tuberculosis 40


title: PBMC2.CC86JANXX.SM2_011818p3_A6


title: Tuberculosis 42


title: Cortex1.CCJ15ANXX.SM2_042518p4_C2


title: PBMC2.CC86JANXX.SM2_011818p3_A5


title: Tuberculosis 38


title: Tuberculosis 39


title: Cortex1.CCJ15ANXX.SM2_042518p4_C8


title: Cortex1.CCJ15ANXX.SM2_042518p4_C7


title: Cortex1.CCJ15ANXX.SM2_042518p4_C1


title: Tuberculosis 37


title: PBMC2.CC86JANXX.SM2_011818p3_A4


title: Tuberculosis 41


title: Tuberculosis 36


title: Tuberculosis 35


title: Cortex1.CCJ15ANXX.SM2_042518p4_C12


title: Tuberculosis 34


title: Cortex1.CCJ15ANXX.SM2_042518p4_C5


title: Tuberculosis 33


title: Cortex1.CCJ15ANXX.SM2_042518p4_C11


title: Tuberculosis 31


title: Cortex1.CCJ15ANXX.SM2_042518p4_C10


title: Cortex1.CCJ15ANXX.SM2_042518p4_C3


title: Tuberculosis 30


title: Tuberculosis 32


title: PBMC2.CC86JANXX.SM2_011818p3_A1


title: Tuberculosis 29


title: Cortex1.CCJ15ANXX.SM2_042518p4_B9


title: Tuberculosis 28


title: PBMC2.CC86JANXX.SM2_011818p3_A12


title: Cortex1.CCJ15ANXX.SM2_042518p4_B8


title: PBMC2.CC86JANXX.SM2_011818p3_A11


title: PBMC2.CC86JANXX.SM2_011818p3_A10


title: Tuberculosis 25


title: Cortex1.CCJ15ANXX.SM2_042518p4_B6


title: Tuberculosis 26


title: Tuberculosis 27


title: Tuberculosis 21


title: PBMC2.CC86JANXX.SM2_011818p1_H9


title: Cortex1.CCJ15ANXX.SM2_042518p4_B7


title: PBMC2.CC86JANXX.SM2_011818p3_A3


title: Tuberculosis 22


title: PBMC2.CC86JANXX.SM2_011818p1_H8


title: Tuberculosis 20


title: Tuberculosis 23


title: PBMC2.CC86JANXX.SM2_011818p3_A2


title: Cortex1.CCJ15ANXX.SM2_042518p4_B4


title: Tuberculosis 18


title: Tuberculosis 19


title: PBMC2.CC86JANXX.SM2_011818p1_H7


title: Cortex1.CCJ15ANXX.SM2_042518p4_B3


title: Tuberculosis 17


title: Cortex1.CCJ15ANXX.SM2_042518p4_B2


title: PBMC2.CC86JANXX.SM2_011818p1_H6


title: Tuberculosis 24


title: Cortex1.CCJ15ANXX.SM2_042518p4_B1


title: PBMC2.CC86JANXX.SM2_011818p1_H5


title: Tuberculosis 14


title: Tuberculosis 13


title: Tuberculosis 11


title: Tuberculosis 12


title: PBMC2.CC86JANXX.SM2_011818p1_H4


title: Cortex1.CCJ15ANXX.SM2_042518p4_B12


title: Tuberculosis 10


title: PBMC2.CC86JANXX.SM2_011818p1_H3


title: Tuberculosis 9


title: Cortex1.CCJ15ANXX.SM2_042518p4_B11


title: Cortex1.CCJ15ANXX.SM2_042518p4_B5


title: PBMC2.CC86JANXX.SM2_011818p1_H2


title: Tuberculosis 8


title: Tuberculosis 6


title: Cortex1.CCJ15ANXX.SM2_042518p4_A9


title: Tuberculosis 7


title: Tuberculosis 5


title: Tuberculosis 16


title: Tuberculosis 4


title: PBMC2.CC86JANXX.SM2_011818p1_H12


title: Tuberculosis 15


title: PBMC2.CC86JANXX.SM2_011818p1_H1


title: Cortex1.CCJ15ANXX.SM2_042518p4_A8


title: Tuberculosis 2


title: PBMC2.CC86JANXX.SM2_011818p1_H11


title: Cortex1.CCJ15ANXX.SM2_042518p4_A7


title: PBMC2.CC86JANXX.SM2_011818p1_H10


title: 10x_wing.disc_rep1

city: Heidelberg

first: Erica

last: Valentini

address: Im Neuenheimer Feld 580

country: Germany

institute: DKFZ

data_processing:
Drop-seq data (Drop-Seq_wing.disc*) were processed according to the published Makosco and Nemesh pipeline http://mccarrolllab.org/wp-content/uploads/2016/03/Drop-seqAlignmentCookbookv1.2Jan2016.pdf
The Drop-Seq experiment and 10x experiment sequence the cell barcode with read1. Drop-Seq: 1-20bp and 10x: 1-26bp
10X data (Tx7) were processed using the software cellranger provided by 10x Genomics (https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger)
Bulk data were processed using Kallisto (https://github.com/griffithlab/rnaseq_tutorial/wiki/Kallisto)
Genome_build: BDGP6 version 87 (GCA 000001215.4)
Supplementary_files_format_and_content: raw counts

molecule: polyA RNA

organism: Drosophila melanogaster

source_name: wing imaginal disc cells

extract_protocol:
Larvae were dissected in Schneider’s medium in batches of 5 animals (to prevent hypoxia) and transferred into a tube containing Schneider’s medium on ice for a maximum time of 30 minutes. To isolate single cells TrypLE (10x) was added and the tissue incubated for 15 minutes in a water bath at 37°C , with gentle mixing every 5 minutes. Schneider’s medium was then added to the loosened tissue pellets, followed by gentle mechanical dissociation using a P1000 pipette. The cell suspension was then passed through a 10 μM cell strainer to remove undigested tissue and cell clumps.
10x libraries were prepared according to 10x Genomica instructions accompanying the Single Cell 3' Library & Gel Bead Kit v2 (CG00052_SingleCell3_ReagentKitv2UserGuide_RevD).

value: wing imaginal disc

tag: developmental stage

value: L3 wandering

value: female


title: Cortex1.CCJ15ANXX.SM2_042518p4_A5


title: PBMC2.CC86JANXX.SM2_011818p1_G8


title: PBMC2.CC86JANXX.SM2_011818p1_G7


title: PBMC2.CC86JANXX.SM2_011818p1_G9


title: Cortex1.CCJ15ANXX.SM2_042518p4_B10


title: Cortex1.CCJ15ANXX.SM2_042518p4_A6


title: eMRT_200876170045_R05C01

first: Pascal

middle: David

last: Johann

department: Pediatric Neurooncology

institute: German Cancer Research Center

hyb_protocol: Standard Illumina Protocol

scan_protocol: Standard Illumina Protocol

data_processing:
R library minfi (v.1.28.0)
Average Beta values are reported in Normalized_calls_ATRT_MRT.txt.

label: Cy5 and Cy3

source_name: DKFZ (samples profiled at the German Cancer Research Center)

label_protocol: Standard Illumina Protocol

growth_protocol: primary samples

extract_protocol: Qiagen Dneasy blood & tissue

treatment_protocol: primary samples

tag: tumor type

value: eMRT

value: Kidney


title: eMRT_200876170045_R06C01


title: eMRT_200876170045_R04C01


title: eMRT_200876170045_R01C01


title: Cortex1.CCJ15ANXX.SM2_042518p4_A3


title: Tuberculosis 3


title: eMRT_200876170045_R02C01


title: eMRT_200876170045_R03C01


title: Cortex1.CCJ15ANXX.SM2_042518p4_A2


title: Cortex1.CCJ15ANXX.SM2_042518p4_A4


title: eMRT_200876170042_R08C01


title: PBMC2.CC86JANXX.SM2_011818p1_G5


title: PBMC2.CC86JANXX.SM2_011818p1_G6


title: eMRT_200882160026_R07C01


title: eMRT_200882160026_R08C01


title: Tuberculosis 1


title: Cortex1.CCJ15ANXX.SM2_042518p4_A1


title: eMRT_200876170045_R07C01


title: eMRT_200876170042_R07C01


title: Cortex1.CCJ15ANXX.SM2_042518p4_A12


title: eMRT_200876170042_R05C01


title: eMRT_200876170042_R06C01


title: PBMC2.CC86JANXX.SM2_011818p1_G3


title: eMRT_200876170042_R04C01


title: eMRT_200876170042_R03C01


title: eMRT_200876170042_R02C01


title: PBMC2.CC86JANXX.SM2_011818p1_G2


title: eMRT_200925700164_R08C01

value: Liver


title: Cortex1.CCJ15ANXX.SM2_042518p4_A10


title: PBMC2.CC86JANXX.SM2_011818p1_G1


title: eMRT_200925700164_R03C01


title: PBMC2.CC86JANXX.SM2_011818p1_G12


title: PBMC2.CC86JANXX.SM2_011818p1_G11


title: Cortex1.CCJ15ANXX.SM2_042518p3_H8


title: eMRT_200928190107_R07C01


title: PBMC2.CC86JANXX.SM2_011818p1_G10


title: eMRT_200925700164_R06C01

value: Cervical


title: eMRT_200848860134_R04C01

value: Intraabdominal


title: Cortex1.CCJ15ANXX.SM2_042518p3_H7


title: PBMC2.CC86JANXX.SM2_011818p1_G4


title: eMRT_200925700164_R01C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_H5


title: eMRT_200848860134_R02C01


title: eMRT_200928190107_R02C01


title: PBMC2.CC86JANXX.SM2_011818p1_F9


title: eMRT_200925700162_R07C01

value: Clavicle


title: Cortex1.CCJ15ANXX.SM2_042518p3_H6


title: Cortex1.CCJ15ANXX.SM2_042518p3_H4


title: Cortex1.CCJ15ANXX.SM2_042518p4_A11


title: eMRT_200848860134_R03C01

value: Orbita


title: Cortex1.CCJ15ANXX.SM2_042518p3_H9


title: eMRT_200925700161_R08C01


title: eMRT_200925700164_R07C01


title: PBMC2.CC86JANXX.SM2_011818p1_F6


title: Cortex1.CCJ15ANXX.SM2_042518p3_H3


title: eMRT_200928190107_R03C01


title: eMRT_200925700164_R04C01


title: eMRT_200925700161_R06C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_H2


title: PBMC2.CC86JANXX.SM2_011818p1_F5


title: PBMC2.CC86JANXX.SM2_011818p1_F7


title: Cortex1.CCJ15ANXX.SM2_042518p3_H1


title: PBMC2.CC86JANXX.SM2_011818p1_F4


title: Cortex1.CCJ15ANXX.SM2_042518p3_H12


title: eMRT_200925700162_R01C01


title: eMRT_200925700162_R02C01


title: eMRT_200928190128_R01C01


title: PBMC2.CC86JANXX.SM2_011818p1_F8


title: eMRT_200928190107_R05C01

value: Paratesticular


title: eMRT_200925700162_R06C01

value: Epidural


title: eMRT_200925700162_R04C01

value: Face


title: eMRT_200925700162_R08C01

value: Retroperitoneal


title: eMRT_200925700164_R05C01

value: Vagina


title: Cortex1.CCJ15ANXX.SM2_042518p3_H11

value: Male


title: PBMC2.CC86JANXX.SM2_011818p1_F3

value: Female


title: PBMC2.CC86JANXX.SM2_011818p1_F2


title: Cortex1.CCJ15ANXX.SM2_042518p3_H10

value: one month


title: eMRT_200928190107_R01C01


title: eMRT_200925700161_R05C01


title: eMRT_200925700164_R02C01


title: PBMC2.CC86JANXX.SM2_011818p1_F1


title: Cortex1.CCJ15ANXX.SM2_042518p3_G9


title: eMRT_200925700162_R05C01


title: eMRT_200928190107_R06C01

value: Paraspinal


title: PBMC2.CC86JANXX.SM2_011818p1_F12


title: eMRT_200928190107_R04C01


title: PBMC2.CC86JANXX.SM2_011818p1_F11


title: eMRT_200925700162_R03C01

value: Pelvis


title: Cortex1.CCJ15ANXX.SM2_042518p3_G7


title: Cortex1.CCJ15ANXX.SM2_042518p3_G8


title: Cortex1.CCJ15ANXX.SM2_042518p3_G6


title: PBMC2.CC86JANXX.SM2_011818p1_F10


title: eMRT_200925700161_R02C01

value: eMRT


title: Cortex1.CCJ15ANXX.SM2_042518p3_G4


title: PBMC2.CC86JANXX.SM2_011818p1_E9


title: PBMC2.CC86JANXX.SM2_011818p1_E7


title: Cortex1.CCJ15ANXX.SM2_042518p3_G5


title: eMRT_200928190026_R02C01

value: Kidney


title: eMRT_200925700157_R08C01


title: eMRT_200848860184_R04C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_G3


title: eMRT_200925700161_R01C01


title: eMRT_200928190026_R03C01


title: PBMC2.CC86JANXX.SM2_011818p1_E6


title: Cortex1.CCJ15ANXX.SM2_042518p3_G2


title: eMRT_200928190107_R08C01


title: PBMC2.CC86JANXX.SM2_011818p1_E5


title: eMRT_200925700161_R07C01


title: eMRT_201465920049_R01C01

source_name: TARGET (provided by the TARGET consortium)


title: PBMC2.CC86JANXX.SM2_011818p1_E8


title: eMRT_201465920044_R08C01


title: eMRT_201465920044_R07C01


title: eMRT_201465920044_R06C01


title: PBMC2.CC86JANXX.SM2_011818p1_E4


title: Cortex1.CCJ15ANXX.SM2_042518p3_G12


title: eMRT_200925700157_R07C01


title: eMRT_201465920044_R04C01


title: PBMC2.CC86JANXX.SM2_011818p1_E3


title: eMRT_201465920044_R05C01


title: eMRT_201465920044_R03C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_G11


title: eMRT_201465920044_R01C01


title: eMRT_200928190026_R04C01


title: eMRT_201465920038_R07C01


title: PBMC2.CC86JANXX.SM2_011818p1_E2


title: eMRT_201465920038_R08C01


title: eMRT_201465920044_R02C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_F9


title: PBMC2.CC86JANXX.SM2_011818p1_E1


title: eMRT_201465920038_R06C01


title: eMRT_201465920038_R05C01


title: eMRT_201465920038_R04C01


title: eMRT_201465920038_R03C01


title: PBMC2.CC86JANXX.SM2_011818p1_E12


title: Cortex1.CCJ15ANXX.SM2_042518p3_F7


title: eMRT_201465920038_R02C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_G1


title: Cortex1.CCJ15ANXX.SM2_042518p3_F8


title: Cortex1.CCJ15ANXX.SM2_042518p3_F6


title: PBMC2.CC86JANXX.SM2_011818p1_E10


title: eMRT_201465920038_R01C01


title: eMRT_201465920037_R08C01


title: PBMC2.CC86JANXX.SM2_011818p1_D9


title: Cortex1.CCJ15ANXX.SM2_042518p3_F5


title: Cortex1.CCJ15ANXX.SM2_042518p3_G10


title: eMRT_201465920037_R06C01


title: eMRT_201465920037_R07C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_F4


title: eMRT_201465920037_R05C01


title: PBMC2.CC86JANXX.SM2_011818p1_D8


title: eMRT_201465920037_R04C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_F3


title: PBMC2.CC86JANXX.SM2_011818p1_D7


title: eMRT_201465920037_R02C01


title: eMRT_201465920037_R03C01


title: eMRT_201465920037_R01C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_F2


title: PBMC2.CC86JANXX.SM2_011818p1_E11


title: eMRT_201465920036_R08C01


title: PBMC2.CC86JANXX.SM2_011818p1_D5


title: Cortex1.CCJ15ANXX.SM2_042518p3_F1


title: Cortex1.CCJ15ANXX.SM2_042518p3_F12


title: PBMC2.CC86JANXX.SM2_011818p1_D4


title: eMRT_201465920036_R06C01


title: PBMC2.CC86JANXX.SM2_011818p1_D3


title: eMRT_201465920036_R05C01


title: eMRT_201465920036_R03C01


title: eMRT_201465920036_R04C01


title: PBMC2.CC86JANXX.SM2_011818p1_D2


title: Cortex1.CCJ15ANXX.SM2_042518p3_F10


title: eMRT_201465920036_R02C01


title: eMRT_201465920036_R01C01


title: PBMC2.CC86JANXX.SM2_011818p1_D6


title: PBMC2.CC86JANXX.SM2_011818p1_D1


title: eMRT_201465920034_R07C01


title: PBMC2.CC86JANXX.SM2_011818p1_D12


title: eMRT_201465920034_R08C01


title: PBMC2.CC86JANXX.SM2_011818p1_D11


title: eMRT_201465920034_R06C01

value: Liver


title: eMRT_201465920034_R03C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_E7


title: eMRT_201465920034_R04C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_E8


title: PBMC2.CC86JANXX.SM2_011818p1_D10


title: eMRT_201465920034_R02C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_E6


title: eMRT_201465920034_R01C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_F11


title: eMRT_201465910059_R07C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_E4


title: PBMC2.CC86JANXX.SM2_011818p1_C9


title: eMRT_201465910059_R04C01


title: PBMC2.CC86JANXX.SM2_011818p1_C7


title: PBMC2.CC86JANXX.SM2_011818p1_C8


title: Cortex1.CCJ15ANXX.SM2_042518p3_E5


title: eMRT_201465910059_R06C01


title: eMRT_201465910059_R02C01


title: PBMC2.CC86JANXX.SM2_011818p1_C6


title: Cortex1.CCJ15ANXX.SM2_042518p3_E3


title: Cortex1.CCJ15ANXX.SM2_042518p3_E9


title: Cortex1.CCJ15ANXX.SM2_042518p3_E2


title: eMRT_201465910059_R01C01


title: eMRT_201465910053_R07C01


title: PBMC2.CC86JANXX.SM2_011818p1_C5


title: PBMC2.CC86JANXX.SM2_011818p1_C4


title: eMRT_201465920034_R05C01


title: eMRT_201465910053_R08C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_E12


title: eMRT_201465910053_R06C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_E1


title: eMRT_201465910053_R04C01


title: eMRT_201465910053_R05C01


title: PBMC2.CC86JANXX.SM2_011818p1_C3


title: eMRT_201465910059_R05C01


title: eMRT_201465910053_R03C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_E11


title: eMRT_201465910053_R02C01


title: eMRT_201465910053_R01C01


title: eMRT_201465910059_R03C01


title: eMRT_201465910052_R08C01


title: eMRT_201465910052_R07C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_D9


title: Cortex1.CCJ15ANXX.SM2_042518p3_E10


title: PBMC2.CC86JANXX.SM2_011818p1_C1


title: eMRT_201465910052_R06C01


title: eMRT_201465910052_R05C01


title: PBMC2.CC86JANXX.SM2_011818p1_C12


title: eMRT_201465910052_R04C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_D8


title: eMRT_201465910052_R03C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_D7


title: eMRT_201465910050_R07C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_D6


title: eMRT_201465910052_R01C01


title: eMRT_201465910052_R02C01


title: eMRT_201465910050_R06C01


title: PBMC2.CC86JANXX.SM2_011818p1_C10


title: PBMC2.CC86JANXX.SM2_011818p1_C11


title: PBMC2.CC86JANXX.SM2_011818p1_B9


title: PBMC2.CC86JANXX.SM2_011818p1_B8


title: eMRT_201465920036_R07C01


title: Cortex1.CCJ15ANXX.SM2_042518p3_D4


title: PBMC2.CC86JANXX.SM2_011818p1_C2


title: Cortex1.CCJ15ANXX.SM2_042518p3_D3


title: PBMC2.CC86JANXX.SM2_011818p1_B6


title: Cortex1.CCJ15ANXX.SM2_042518p3_D2


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_B3

description:
Sex: Female for HEK293 and Male for NIH3T3
scRNA-seq
3'-end
mixture_hg19_mm10_count_matrix.mtx, mixture_hg19_mm10_gene.tsv, mixture_hg19_mm10_cell.tsv

organism:
Homo sapiens
Mus musculus

source_name: Mixture of human HEK293 and murine NIH3T3 cell lines

value: Pooled male and female

value: sci-RNA-seq


title: PBMC2.CC86JANXX.SM2_011818p1_B5


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_B4


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_B2


title: eMRT_201465910050_R08C01


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_B1


title: Cortex1.CCJ15ANXX.SM2_042518p3_D5


title: Cortex1.CCJ15ANXX.SM2_042518p3_D1


title: DAM-mYap1B

first: Javier

last: Vázquez-Marín

state: Baden-Württemberg

address: Im Neuenheimer Feld 230, 5th floor

department: Centre for Organismal Studies (COS)

institute: Heidelberg University

library_source: genomic

data_processing:
Library strategy: DamID-seq
Raw sequencing data was pre-processed using the Cutadapt tool to discard short reads (-m 34 parameter) and the ones corresponding to the adaptors used for deep sequencing.
Reads from zebrafish and medaka proteins were mapped against the GRCz10/danRer10 and the NIG/UT MEDAKA1/oryLat2 genome versions of each breed, respectively, using Bowtie2.
Duplicated reads were removed using Samtools rmdup.
The set of specific DAM-YAP1, DAM-TAZ and DAM-YAP1B peaks as well as their respective control peaks was obtained using the R package iDEAR (available at https://bitbucket.org/juanlmateo/idear).
Each DamID peak was assigned to its closest TSS using bedtools closest. The position of the transcription start site (TSS) of each gene was obtained from ENSEMBL database (Version 89) using the online tool Biomart (www.ensembl.org/biomart).
Motif enrichment analysis was carried out using DREME and AME. GO enrichment analysis was performed using PANTHER.
Genome_build: oryLat2 (medaka) and danRer10 (zebrafish)
Supplementary_files_format_and_content: tab-limited bed files for each DAM-TF sample indicating the number, coordinates and iDEAR score for each specific peak and for each control peak.

organism: Oryzias latipes

source_name: Whole embryos

extract_protocol:
We followed the protocol reported for medaka (Gutiérrez-Triana et al., 2016). WT zebrafish and medaka embryos were injected with each DAM-TF mRNA and its gDNA fraction was isolated when they reached the 80% epiboly stage. 40 embryos were used for each indipendent DamID replicate. gDNA was fragmented using DpnII restriction enzymes, dephosphorilated with phosphatase alkaline and cleaved at its GATC methylated sites using DpnI. Adapters, produced by hybridazing two oligos, were ligated to both ends for each fragment to build up DNA libraries through a 25-cycle PCR amplification step using a phosphorothioate primer. Each PCR product was run on a 1% agarose gel to check for the presence of a smear in DpnI-treated samples. Each library was amplified then five times before deep sequencing (Illumina HiSeq 2500 sequencing). Remaining DNA templates were removed with T7 exonuclease before sequencing. Three replicates for each sample were used for the iDamID-seq analysis.
DNA libraries were prepared for sequencing using standard Illumina protocols.

value: Whole embryos

value: Stg 16

tag: genotype/variation


title: DAM-mYap1


title: PBMC2.CC86JANXX.SM2_011818p1_B4


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_B12


title: Cortex1.CCJ15ANXX.SM2_042518p3_D11


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_B10


title: PBMC2.CC86JANXX.SM2_011818p1_B2


title: PBMC2.CC86JANXX.SM2_011818p1_B3


title: eMRT_201465910050_R05C01


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A9


title: Cortex1.CCJ15ANXX.SM2_042518p3_D12


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_B11


title: DAM-mGFP

value: DAM-mGFP


title: PBMC2.CC86JANXX.SM2_011818p1_B7


title: Cortex1.CCJ15ANXX.SM2_042518p3_D10


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A7


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A6


title: Cortex1.CCJ15ANXX.SM2_042518p3_C9


title: PBMC2.CC86JANXX.SM2_011818p1_B1


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A5


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A3


title: PBMC2.CC86JANXX.SM2_011818p1_B12


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A4


title: Cortex1.CCJ15ANXX.SM2_042518p3_C8


title: Cortex1.CCJ15ANXX.SM2_042518p3_C7


title: PBMC2.CC86JANXX.SM2_011818p1_B10


title: Cortex1.CCJ15ANXX.SM2_042518p3_C6


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A1


title: PBMC2.CC86JANXX.SM2_011818p1_A9


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A8


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A2


title: PBMC2.CC86JANXX.SM2_011818p1_A8


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A10


title: Mixture2.H5VV5BCX2.SeqWell_BC9

value: Seq-Well


title: Mixture2.CBU1CANXX.SeqWell_BC9


title: Mixture2.HJTJGBCX2.inDrops

value: inDrops


title: Mixture2.CBU1CANXX.DropSeq

value: Drop-seq


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A11


title: Mixture2.CBU1CANXX.103117_SciSeq-p1_A12


title: Cortex1.CCJ15ANXX.SM2_042518p3_C4


title: Cortex1.CCJ15ANXX.SM2_042518p3_C3


title: Cortex1.CCJ15ANXX.SM2_042518p3_C5


title: Mixture2.CBU1CANXX.CELseq4


title: PBMC2.CC86JANXX.SM2_011818p1_A7


title: Mixture2.CBU1CANXX.CELseq3


title: PBMC2.CC86JANXX.SM2_011818p1_A6


title: PBMC2.CC86JANXX.SM2_011818p1_A5


title: Cortex1.CCJ15ANXX.SM2_042518p3_C2


title: PBMC2.CC86JANXX.SM2_011818p1_B11


title: Mixture2.CBU1CANXX.CELseq1


title: PBMC2.CC86JANXX.SM2_011818p1_A4


title: Cortex1.CCJ15ANXX.SM2_042518p3_C1


title: Cortex1.CCJ15ANXX.SM2_042518p3_C12


title: Mixture2.HYK72BCXY.inDrops.1


title: Mixture2.CBU1CANXX.10X_C

value: 10x Chromium (v2)


title: Mixture2.CBU1CANXX.10X_B


title: Mixture2.CBU1CANXX.10X_A


title: PBMC2.CC86JANXX.SM2_011818p1_A3


title: Cortex1.CCJ15ANXX.SM2_042518p3_C11

value: Male


title: Mixture1.CAPTEANXX.SM2_062617p4_H9

description:
Sex: Female for HEK293 and Male for NIH3T3
scRNA-seq
full-length
mixture_hg19_mm10_count_matrix.mtx, mixture_hg19_mm10_gene.tsv, mixture_hg19_mm10_cell.tsv


title: PBMC2.CC86JANXX.SM2_011818p1_A2

value: Female


title: Cortex1.CCJ15ANXX.SM2_042518p3_B9

value: one month


title: Cortex1.CCJ15ANXX.SM2_042518p3_C10


title: Mixture1.CAPTEANXX.SM2_062617p4_H6


title: Mixture1.CAPTEANXX.SM2_062617p4_H8


title: PBMC2.CC86JANXX.SM2_011818p1_A11


title: Mixture1.CAPTEANXX.SM2_062617p4_H7


title: PBMC2.CC86JANXX.SM2_011818p1_A1


title: PBMC2.CC86JANXX.SM2_011818p1_A12


title: Mixture1.CAPTEANXX.SM2_062617p4_H1


title: Mixture2.CBU1CANXX.CELseq2


title: Mixture1.CAPTEANXX.SM2_062617p4_H5


title: Mixture1.CAPTEANXX.SM2_062617p4_H4


title: Mixture1.CAPTEANXX.SM2_062617p4_H3


title: Cortex1.CCJ15ANXX.SM2_042518p3_B6


title: Cortex1.CCJ15ANXX.SM2_042518p3_B7


title: Mixture2.CBU1CANXX.10X_D


title: PBMC2.CC86JANXX.SM2_011818p1_A10


title: Mixture1.CAPTEANXX.SM2_062617p4_H12


title: PBMC2.HKH3FBCX2.inDrops

description:
scRNA-seq
3'-end
pbmc_hg38_count_matrix.mtx, pbmc_hg38_gene.tsv, pbmc_hg38_cell.tsv


title: Mixture1.CAPTEANXX.SM2_062617p4_H11


title: Mixture1.CAPTEANXX.SM2_062617p4_G8


title: Cortex1.CCJ15ANXX.SM2_042518p3_B8


title: PBMC2.HKGWFBCX2.inDrops


title: Cortex1.CCJ15ANXX.SM2_042518p3_B5


title: Mixture1.CAPTEANXX.SM2_062617p4_G9


title: Cortex1.CCJ15ANXX.SM2_042518p3_B4


title: Cortex1.CCJ15ANXX.SM2_042518p3_B3


title: Cortex1.CCJ15ANXX.SM2_042518p3_B2


title: PBMC2.CCLBDANXX.68.011818-DropSeq


title: Cortex1.CCJ15ANXX.SM2_042518p3_B1


title: Mixture1.CAPTEANXX.SM2_062617p4_G5


title: Mixture1.CAPTEANXX.SM2_062617p4_H10


title: Mixture1.CAPTEANXX.SM2_062617p4_H2


title: Mixture1.CAPTEANXX.SM2_062617p4_G11


title: Mixture1.CAPTEANXX.SM2_062617p4_G4


title: Mixture1.CAPTEANXX.SM2_062617p4_G10


title: PBMC2.CCLBDANXX.68.011818CELseq4


title: Cortex1.CCJ15ANXX.SM2_042518p3_B11


title: Mixture1.CAPTEANXX.SM2_062617p4_G3


title: PBMC2.CCLBDANXX.68.011818CELseq3


title: Mixture1.CAPTEANXX.SM2_062617p4_G1


title: Cortex1.CCJ15ANXX.SM2_042518p3_B12


title: Mixture1.CAPTEANXX.SM2_062617p4_G12


title: Mixture1.CAPTEANXX.SM2_062617p4_G2


title: PBMC2.HJTJGBCX2.inDrops


title: PBMC2.CCLBDANXX.68.011818CELseq2


title: PBMC2.CCLBDANXX.68.011818CELseq1


title: Mixture1.CAPTEANXX.SM2_062617p4_F7


title: Mixture1.CAPTEANXX.SM2_062617p4_F6


title: Mixture1.CAPTEANXX.SM2_062617p4_G7


title: Mixture1.CAPTEANXX.SM2_062617p4_G6


title: Mixture1.CAPTEANXX.SM2_062617p4_F5


title: PBMC2.CCLBDANXX.68.011818-10X_B


title: Cortex1.CCJ15ANXX.SM2_042518p3_A9


title: Mixture1.CAPTEANXX.SM2_062617p4_F4


title: Cortex1.CCJ15ANXX.SM2_042518p3_A8


title: PBMC2.CCLBDANXX.68.011818-10X_C


title: Cortex1.CCJ15ANXX.SM2_042518p3_B10


title: PBMC2.CCLBDANXX.68.011818-10X_A


title: Mixture1.CAPTEANXX.SM2_062617p4_F2


title: Cortex1.CCJ15ANXX.SM2_042518p3_A7


title: Mixture1.CAPTEANXX.SM2_062617p4_F11


title: Mixture1.CAPTEANXX.SM2_062617p4_F8


title: Cortex1.CCJ15ANXX.SM2_042518p3_A6


title: Mixture1.CAPTEANXX.SM2_062617p4_F12


title: PBMC2.CCLBDANXX.68.011818-10X_D


title: PBMC2.CCLBDANXX.45.011818-DropSeq


title: Mixture1.CAPTEANXX.SM2_062617p4_E8


title: Mixture1.CAPTEANXX.SM2_062617p4_E7


title: Cortex1.CCJ15ANXX.SM2_042518p3_A5


title: Mixture1.CAPTEANXX.SM2_062617p4_F10


title: PBMC2.CC86JANXX.SeqWell_S3_3


title: PBMC2.CC86JANXX.SeqWell_S3_2


title: Mixture1.CAPTEANXX.SM2_062617p4_E4


title: Mixture1.CAPTEANXX.SM2_062617p4_E9


title: Cortex1.CCJ15ANXX.SM2_042518p3_A4


title: PBMC2.CC86JANXX.inDrops.8


title: Cortex1.CCJ15ANXX.SM2_042518p3_A2


title: Cortex1.CCJ15ANXX.SM2_042518p3_A3


title: PBMC2.CC86JANXX.SeqWell_S3_1


title: Mixture1.CAPTEANXX.SM2_062617p4_E5


title: Cortex1.CCJ15ANXX.SM2_042518p3_A1


title: Mixture1.CAPTEANXX.SM2_062617p4_E2


title: Mixture1.CAPTEANXX.SM2_062617p4_E3


title: Mixture1.CAPTEANXX.SM2_062617p4_E6


title: Mixture1.CAPTEANXX.SM2_062617p4_F1


title: Mixture1.CAPTEANXX.SM2_062617p4_F3


title: Mixture1.CAPTEANXX.SM2_062617p4_F9


title: PBMC2.CC86JANXX.011818-DropSeq


title: Mixture1.CAPTEANXX.SM2_062617p4_E12


title: Cortex1.CCJ15ANXX.SM2_042518p3_A12


title: Mixture1.CAPTEANXX.SM2_062617p4_E1


title: Mixture1.CAPTEANXX.SM2_062617p4_E11


title: PBMC2.CC86JANXX.011818CELseq4


title: Mixture1.CAPTEANXX.SM2_062617p4_E10


title: Mixture1.CAPTEANXX.SM2_062617p4_D9


title: Cortex1.CCJ15ANXX.SM2_042518p3_A10


title: PBMC2.CC86JANXX.011818CELseq2


title: Mixture1.CAPTEANXX.SM2_062617p4_D7


title: Cortex1.CCJ15ANXX.SM2_042518p2_H9


title: Mixture1.CAPTEANXX.SM2_062617p4_D8


title: PBMC2.CC86JANXX.011818CELseq1


title: Mixture1.CAPTEANXX.SM2_062617p4_D6


title: Cortex1.CCJ15ANXX.SM2_042518p2_H8


title: Mixture1.CAPTEANXX.SM2_062617p4_D5


title: Mixture1.CAPTEANXX.SM2_062617p4_D4


title: PBMC2.CC86JANXX.011818-10X_D


title: Mixture1.CAPTEANXX.SM2_062617p4_D1


title: PBMC2.CC86JANXX.011818-10X_C


title: Cortex1.CCJ15ANXX.SM2_042518p2_H7


title: Mixture1.CAPTEANXX.SM2_062617p4_D3


title: PBMC2.CC86JANXX.011818-10X_B


title: Cortex1.CCJ15ANXX.SM2_042518p3_A11


title: Mixture1.CAPTEANXX.SM2_062617p4_D11


title: PBMC2.CC86JANXX.011818CELseq3


title: Mixture1.CAPTEANXX.SM2_062617p4_D12


title: Cortex1.CCJ15ANXX.SM2_042518p2_H6


title: Cortex1.CCJ15ANXX.SM2_042518p2_H5


title: PBMC2.CC86JANXX.011818-10X_A


title: PBMC1.CC7W2ANXX.SM2_120717p6_H9


title: Cortex1.CCJ15ANXX.SM2_042518p2_H4


title: Mixture1.CAPTEANXX.SM2_062617p4_D10


title: Mixture1.CAPTEANXX.SM2_062617p4_C8


title: Mixture1.CAPTEANXX.SM2_062617p4_C9


title: Cortex1.CCJ15ANXX.SM2_042518p2_H3


title: Mixture1.CAPTEANXX.SM2_062617p4_C6


title: Cortex1.CCJ15ANXX.SM2_042518p2_H2


title: Mixture1.CAPTEANXX.SM2_062617p4_C4


title: PBMC1.CC7W2ANXX.SM2_120717p6_H7


title: Mixture1.CAPTEANXX.SM2_062617p4_D2


title: Mixture1.CAPTEANXX.SM2_062617p4_C3


title: PBMC1.CC7W2ANXX.SM2_120717p6_H8


title: Cortex1.CCJ15ANXX.SM2_042518p2_H1


title: Mixture1.CAPTEANXX.SM2_062617p4_C2


title: Cortex1.CCJ15ANXX.SM2_042518p2_H12


title: PBMC1.CC7W2ANXX.SM2_120717p6_H6


title: Mixture1.CAPTEANXX.SM2_062617p4_C1


title: PBMC1.CC7W2ANXX.SM2_120717p6_H5


title: Mixture1.CAPTEANXX.SM2_062617p4_C11


title: Mixture1.CAPTEANXX.SM2_062617p4_C10


title: Cortex1.CCJ15ANXX.SM2_042518p2_H11


title: PBMC1.CC7W2ANXX.SM2_120717p6_H4


title: Cortex1.CCJ15ANXX.SM2_042518p2_H10


title: Mixture1.CAPTEANXX.SM2_062617p4_C7


title: PBMC1.CC7W2ANXX.SM2_120717p6_H3


title: Mixture1.CAPTEANXX.SM2_062617p4_B8


title: Mixture1.CAPTEANXX.SM2_062617p4_B7


title: Cortex1.CCJ15ANXX.SM2_042518p2_G9


title: Mixture1.CAPTEANXX.SM2_062617p4_B6


title: Mixture1.CAPTEANXX.SM2_062617p4_B5


title: Mixture1.CAPTEANXX.SM2_062617p4_C5


title: Cortex1.CCJ15ANXX.SM2_042518p2_G8


title: PBMC1.CC7W2ANXX.SM2_120717p6_H2


title: Mixture1.CAPTEANXX.SM2_062617p4_B4


title: Cortex1.CCJ15ANXX.SM2_042518p2_G7


title: Mixture1.CAPTEANXX.SM2_062617p4_B3


title: Mixture1.CAPTEANXX.SM2_062617p4_C12


title: Mixture1.CAPTEANXX.SM2_062617p4_B2


title: Cortex1.CCJ15ANXX.SM2_042518p2_G6


title: PBMC1.CC7W2ANXX.SM2_120717p6_H1


title: PBMC1.CC7W2ANXX.SM2_120717p6_H12


title: Cortex1.CCJ15ANXX.SM2_042518p2_G5


title: Mixture1.CAPTEANXX.SM2_062617p4_B11


title: PBMC1.CC7W2ANXX.SM2_120717p6_H10


title: PBMC1.CC7W2ANXX.SM2_120717p6_H11


title: Mixture1.CAPTEANXX.SM2_062617p4_B9


title: Mixture1.CAPTEANXX.SM2_062617p4_B10


title: Mixture1.CAPTEANXX.SM2_062617p4_A9


title: Mixture1.CAPTEANXX.SM2_062617p4_B12


title: Mixture1.CAPTEANXX.SM2_062617p4_A7


title: Cortex1.CCJ15ANXX.SM2_042518p2_G3


title: Mixture1.CAPTEANXX.SM2_062617p4_A8


title: PBMC1.CC7W2ANXX.SM2_120717p6_G9


title: Cortex1.CCJ15ANXX.SM2_042518p2_G2


title: Mixture1.CAPTEANXX.SM2_062617p4_A4


title: Mixture1.CAPTEANXX.SM2_062617p4_B1


title: Mixture1.CAPTEANXX.SM2_062617p4_A5


title: PBMC1.CC7W2ANXX.SM2_120717p6_G8


title: Cortex1.CCJ15ANXX.SM2_042518p2_G4


title: Mixture1.CAPTEANXX.SM2_062617p4_A6


title: Mixture1.CAPTEANXX.SM2_062617p4_A3


title: PBMC1.CC7W2ANXX.SM2_120717p6_G7


title: PBMC1.CC7W2ANXX.SM2_120717p6_G6


title: Mixture1.CAPTEANXX.SM2_062617p4_A1


title: Cortex1.CCJ15ANXX.SM2_042518p2_G12


title: Mixture1.CAPTEANXX.SM2_062617p4_A12


title: PBMC1.CC7W2ANXX.SM2_120717p6_G5


title: Mixture1.CAPTEANXX.SM2_062617p4_A11


title: Cortex1.CCJ15ANXX.SM2_042518p2_G1


title: Cortex1.CCJ15ANXX.SM2_042518p2_G11


title: PBMC1.CC7W2ANXX.SM2_120717p6_G4


title: Mixture1.CAPTEANXX.SM2_062617p3_H8


title: Cortex1.CCJ15ANXX.SM2_042518p2_G10


title: Mixture1.CAPTEANXX.SM2_062617p3_H7


title: Mixture1.CAPTEANXX.SM2_062617p3_H9


title: Mixture1.CAPTEANXX.SM2_062617p4_A10


title: Cortex1.CCJ15ANXX.SM2_042518p2_F9


title: PBMC1.CC7W2ANXX.SM2_120717p6_G3


title: Mixture1.CAPTEANXX.SM2_062617p4_A2


title: Mixture1.CAPTEANXX.SM2_062617p3_H6


title: Mixture1.CAPTEANXX.SM2_062617p3_H5


title: Mixture1.CAPTEANXX.SM2_062617p3_H4


title: Cortex1.CCJ15ANXX.SM2_042518p2_F7


title: Mixture1.CAPTEANXX.SM2_062617p3_H3


title: PBMC1.CC7W2ANXX.SM2_120717p6_G1


title: Cortex1.CCJ15ANXX.SM2_042518p2_F8


title: PBMC1.CC7W2ANXX.SM2_120717p6_G2


title: Mixture1.CAPTEANXX.SM2_062617p3_H2


title: PBMC1.CC7W2ANXX.SM2_120717p6_G11


title: Mixture1.CAPTEANXX.SM2_062617p3_H11


title: Cortex1.CCJ15ANXX.SM2_042518p2_F6


title: PBMC1.CC7W2ANXX.SM2_120717p6_G12


title: Mixture1.CAPTEANXX.SM2_062617p3_H12


title: Cortex1.CCJ15ANXX.SM2_042518p2_F5


title: Mixture1.CAPTEANXX.SM2_062617p3_H10


title: PBMC1.CC7W2ANXX.SM2_120717p6_G10


title: Cortex1.CCJ15ANXX.SM2_042518p2_F4


title: Mixture1.CAPTEANXX.SM2_062617p3_G9


title: Mixture1.CAPTEANXX.SM2_062617p3_G8


title: PBMC1.CC7W2ANXX.SM2_120717p6_F9


title: Cortex1.CCJ15ANXX.SM2_042518p2_F2


title: PBMC1.CC7W2ANXX.SM2_120717p6_F8


title: Mixture1.CAPTEANXX.SM2_062617p3_G6


title: Cortex1.CCJ15ANXX.SM2_042518p2_F3


title: Mixture1.CAPTEANXX.SM2_062617p3_H1


title: Mixture1.CAPTEANXX.SM2_062617p3_G7


title: PBMC1.CC7W2ANXX.SM2_120717p6_F7


title: Mixture1.CAPTEANXX.SM2_062617p3_G4


title: Mixture1.CAPTEANXX.SM2_062617p3_G3


title: Mixture1.CAPTEANXX.SM2_062617p3_G2


title: Cortex1.CCJ15ANXX.SM2_042518p2_F12


title: Cortex1.CCJ15ANXX.SM2_042518p2_F1


title: Mixture1.CAPTEANXX.SM2_062617p3_G1


title: PBMC1.CC7W2ANXX.SM2_120717p6_F6


title: Mixture1.CAPTEANXX.SM2_062617p3_G12


title: Mixture1.CAPTEANXX.SM2_062617p3_G11


title: PBMC1.CC7W2ANXX.SM2_120717p6_F5


title: Mixture1.CAPTEANXX.SM2_062617p3_F8


title: PBMC1.CC7W2ANXX.SM2_120717p6_F3


title: Cortex1.CCJ15ANXX.SM2_042518p2_F10


title: Mixture1.CAPTEANXX.SM2_062617p3_G10


title: Cortex1.CCJ15ANXX.SM2_042518p2_E9


title: Mixture1.CAPTEANXX.SM2_062617p3_F9


title: Mixture1.CAPTEANXX.SM2_062617p3_F7


title: PBMC1.CC7W2ANXX.SM2_120717p6_F4


title: PBMC1.CC7W2ANXX.SM2_120717p6_F2


title: Mixture1.CAPTEANXX.SM2_062617p3_G5


title: Mixture1.CAPTEANXX.SM2_062617p3_F4


title: Mixture1.CAPTEANXX.SM2_062617p3_F3


title: Mixture1.CAPTEANXX.SM2_062617p3_F1


title: PBMC1.CC7W2ANXX.SM2_120717p6_F12


title: Mixture1.CAPTEANXX.SM2_062617p3_F2


title: PBMC1.CC7W2ANXX.SM2_120717p6_F1


title: Cortex1.CCJ15ANXX.SM2_042518p2_E6


title: PBMC1.CC7W2ANXX.SM2_120717p6_F11


title: Cortex1.CCJ15ANXX.SM2_042518p2_E5


title: Cortex1.CCJ15ANXX.SM2_042518p2_F11


title: Cortex1.CCJ15ANXX.SM2_042518p2_E7


title: Mixture1.CAPTEANXX.SM2_062617p3_F11


title: PBMC1.CC7W2ANXX.SM2_120717p6_F10


title: Mixture1.CAPTEANXX.SM2_062617p3_E9


title: Cortex1.CCJ15ANXX.SM2_042518p2_E4


title: Mixture1.CAPTEANXX.SM2_062617p3_E7


title: Mixture1.CAPTEANXX.SM2_062617p3_F6


title: Mixture1.CAPTEANXX.SM2_062617p3_E6


title: PBMC1.CC7W2ANXX.SM2_120717p6_E9


title: Mixture1.CAPTEANXX.SM2_062617p3_E8


title: PBMC1.CC7W2ANXX.SM2_120717p6_E8


title: Cortex1.CCJ15ANXX.SM2_042518p2_E2


title: Cortex1.CCJ15ANXX.SM2_042518p2_E8


title: Mixture1.CAPTEANXX.SM2_062617p3_F5


title: PBMC1.CC7W2ANXX.SM2_120717p6_E7


title: Cortex1.CCJ15ANXX.SM2_042518p2_E3


title: Mixture1.CAPTEANXX.SM2_062617p3_E5


title: Mixture1.CAPTEANXX.SM2_062617p3_F12


title: Mixture1.CAPTEANXX.SM2_062617p3_F10


title: PBMC1.CC7W2ANXX.SM2_120717p6_E6


title: Cortex1.CCJ15ANXX.SM2_042518p2_E12


title: Mixture1.CAPTEANXX.SM2_062617p3_E1


title: Mixture1.CAPTEANXX.SM2_062617p3_E3


title: Mixture1.CAPTEANXX.SM2_062617p3_E12


title: Mixture1.CAPTEANXX.SM2_062617p3_E2


title: PBMC1.CC7W2ANXX.SM2_120717p6_E5


title: Mixture1.CAPTEANXX.SM2_062617p3_E11


title: Cortex1.CCJ15ANXX.SM2_042518p2_E11


title: Mixture1.CAPTEANXX.SM2_062617p3_D9


title: PBMC1.CC7W2ANXX.SM2_120717p6_E4


title: Cortex1.CCJ15ANXX.SM2_042518p2_E10


title: Mixture1.CAPTEANXX.SM2_062617p3_D8


title: Mixture1.CAPTEANXX.SM2_062617p3_E10


title: PBMC1.CC7W2ANXX.SM2_120717p6_E3


title: Mixture1.CAPTEANXX.SM2_062617p3_E4


title: Cortex1.CCJ15ANXX.SM2_042518p2_D9


title: Mixture1.CAPTEANXX.SM2_062617p3_D6


title: Mixture1.CAPTEANXX.SM2_062617p3_D7


title: Mixture1.CAPTEANXX.SM2_062617p3_D5


title: PBMC1.CC7W2ANXX.SM2_120717p6_E2


title: Mixture1.CAPTEANXX.SM2_062617p3_D4


title: PBMC1.CC7W2ANXX.SM2_120717p6_E1


title: Cortex1.CCJ15ANXX.SM2_042518p2_E1


title: Mixture1.CAPTEANXX.SM2_062617p3_D3


title: Mixture1.CAPTEANXX.SM2_062617p3_D2


title: Cortex1.CCJ15ANXX.SM2_042518p2_D7


title: PBMC1.CC7W2ANXX.SM2_120717p6_E12


title: Mixture1.CAPTEANXX.SM2_062617p3_D12


title: PBMC1.CC7W2ANXX.SM2_120717p6_E11


title: Cortex1.CCJ15ANXX.SM2_042518p2_D5


title: Cortex1.CCJ15ANXX.SM2_042518p2_D6


title: Mixture1.CAPTEANXX.SM2_062617p3_D10


title: Mixture1.CAPTEANXX.SM2_062617p3_C9


title: PBMC1.CC7W2ANXX.SM2_120717p6_D9


title: Mixture1.CAPTEANXX.SM2_062617p3_C8


title: Cortex1.CCJ15ANXX.SM2_042518p2_D3


title: PBMC1.CC7W2ANXX.SM2_120717p6_D8


title: Mixture1.CAPTEANXX.SM2_062617p3_D1


title: Mixture1.CAPTEANXX.SM2_062617p3_C7


title: Mixture1.CAPTEANXX.SM2_062617p3_C6


title: Mixture1.CAPTEANXX.SM2_062617p3_C5


title: Mixture1.CAPTEANXX.SM2_062617p3_D11


title: Mixture1.CAPTEANXX.SM2_062617p3_C4


title: Cortex1.CCJ15ANXX.SM2_042518p2_D8


title: Cortex1.CCJ15ANXX.SM2_042518p2_D2


title: Mixture1.CAPTEANXX.SM2_062617p3_C3


title: Mixture1.CAPTEANXX.SM2_062617p3_C2


title: PBMC1.CC7W2ANXX.SM2_120717p6_D7


title: Mixture1.CAPTEANXX.SM2_062617p3_C12


title: PBMC1.CC7W2ANXX.SM2_120717p6_D6


title: Cortex1.CCJ15ANXX.SM2_042518p2_D1


title: Mixture1.CAPTEANXX.SM2_062617p3_C1


title: Cortex1.CCJ15ANXX.SM2_042518p2_D12


title: PBMC1.CC7W2ANXX.SM2_120717p6_E10


title: Cortex1.CCJ15ANXX.SM2_042518p2_D11


title: PBMC1.CC7W2ANXX.SM2_120717p6_D4


title: Cortex1.CCJ15ANXX.SM2_042518p2_D10


title: Mixture1.CAPTEANXX.SM2_062617p3_C11


title: Mixture1.CAPTEANXX.SM2_062617p3_B8


title: Mixture1.CAPTEANXX.SM2_062617p3_B9


title: Mixture1.CAPTEANXX.SM2_062617p3_C10


title: Cortex1.CCJ15ANXX.SM2_042518p2_C8


title: Mixture1.CAPTEANXX.SM2_062617p3_B6


title: Mixture1.CAPTEANXX.SM2_062617p3_B5


title: PBMC1.CC7W2ANXX.SM2_120717p6_D3


title: PBMC1.CC7W2ANXX.SM2_120717p6_D2


title: Mixture1.CAPTEANXX.SM2_062617p3_B7


title: Mixture1.CAPTEANXX.SM2_062617p3_B4


title: Cortex1.CCJ15ANXX.SM2_042518p2_C7


title: Mixture1.CAPTEANXX.SM2_062617p3_B3


title: PBMC1.CC7W2ANXX.SM2_120717p6_D1


title: PBMC1.CC7W2ANXX.SM2_120717p6_D5


title: PBMC1.CC7W2ANXX.SM2_120717p6_D12


title: Cortex1.CCJ15ANXX.SM2_042518p2_C6


title: Mixture1.CAPTEANXX.SM2_062617p3_B1


title: Mixture1.CAPTEANXX.SM2_062617p3_B11


title: Mixture1.CAPTEANXX.SM2_062617p3_B10


title: Cortex1.CCJ15ANXX.SM2_042518p2_C5


title: PBMC1.CC7W2ANXX.SM2_120717p6_D11


title: PBMC1.CC7W2ANXX.SM2_120717p6_D10


title: Mixture1.CAPTEANXX.SM2_062617p3_A9


title: Cortex1.CCJ15ANXX.SM2_042518p2_C4


title: PBMC1.CC7W2ANXX.SM2_120717p6_C9


title: Cortex1.CCJ15ANXX.SM2_042518p2_C9


title: Mixture1.CAPTEANXX.SM2_062617p3_A7


title: Cortex1.CCJ15ANXX.SM2_042518p2_C3


title: PBMC1.CC7W2ANXX.SM2_120717p6_C8


title: Mixture1.CAPTEANXX.SM2_062617p3_A5


title: Mixture1.CAPTEANXX.SM2_062617p3_A4


title: PBMC1.CC7W2ANXX.SM2_120717p6_C7


title: Mixture1.CAPTEANXX.SM2_062617p3_B2


title: Mixture1.CAPTEANXX.SM2_062617p3_A6


title: Mixture1.CAPTEANXX.SM2_062617p3_A2


title: PBMC1.CC7W2ANXX.SM2_120717p6_C6


title: Mixture1.CAPTEANXX.SM2_062617p3_A12


title: Mixture1.CAPTEANXX.SM2_062617p3_B12


title: PBMC1.CC7W2ANXX.SM2_120717p6_C5


title: Mixture1.CAPTEANXX.SM2_062617p3_A11


title: Cortex1.CCJ15ANXX.SM2_042518p2_C12


title: Cortex1.CCJ15ANXX.SM2_042518p2_C1


title: Cortex1.CCJ15ANXX.SM2_042518p2_C11


title: Mixture1.CAPTEANXX.SM2_062617p3_A10


title: Cortex1.CCJ15ANXX.SM2_042518p2_D4


title: PBMC1.CC7W2ANXX.SM2_120717p6_C3


title: Cortex1.CCJ15ANXX.SM2_042518p2_C10


title: Mixture1.CAPTEANXX.SM2_062617p2_H9


title: PBMC1.CC7W2ANXX.SM2_120717p6_C4


title: Mixture1.CAPTEANXX.SM2_062617p2_H6


title: Cortex1.CCJ15ANXX.SM2_042518p2_C2


title: PBMC1.CC7W2ANXX.SM2_120717p6_C2


title: Mixture1.CAPTEANXX.SM2_062617p3_A3


title: Cortex1.CCJ15ANXX.SM2_042518p2_B8


title: Mixture1.CAPTEANXX.SM2_062617p2_H5


title: Mixture1.CAPTEANXX.SM2_062617p3_A1


title: Mixture1.CAPTEANXX.SM2_062617p2_H3


title: Cortex1.CCJ15ANXX.SM2_042518p2_B9


title: Cortex1.CCJ15ANXX.SM2_042518p2_B7


title: PBMC1.CC7W2ANXX.SM2_120717p6_C1


title: Mixture1.CAPTEANXX.SM2_062617p2_H7


title: Mixture1.CAPTEANXX.SM2_062617p2_H2


title: PBMC1.CC7W2ANXX.SM2_120717p6_C12


title: Mixture1.CAPTEANXX.SM2_062617p2_H4


title: Mixture1.CAPTEANXX.SM2_062617p2_H12


title: Cortex1.CCJ15ANXX.SM2_042518p2_B6


title: Mixture1.CAPTEANXX.SM2_062617p2_H11


title: Mixture1.CAPTEANXX.SM2_062617p2_H1


title: PBMC1.CC7W2ANXX.SM2_120717p6_C11


title: Cortex1.CCJ15ANXX.SM2_042518p2_B5


title: Mixture1.CAPTEANXX.SM2_062617p2_H10


title: Mixture1.CAPTEANXX.SM2_062617p2_H8


title: Mixture1.CAPTEANXX.SM2_062617p2_G9


title: Cortex1.CCJ15ANXX.SM2_042518p2_B4


title: PBMC1.CC7W2ANXX.SM2_120717p6_C10


title: Mixture1.CAPTEANXX.SM2_062617p2_G8


title: PBMC1.CC7W2ANXX.SM2_120717p6_B9


title: Mixture1.CAPTEANXX.SM2_062617p2_G7


title: Mixture1.CAPTEANXX.SM2_062617p2_G6


title: Cortex1.CCJ15ANXX.SM2_042518p2_B3


title: PBMC1.CC7W2ANXX.SM2_120717p6_B8


title: Mixture1.CAPTEANXX.SM2_062617p2_G4


title: PBMC1.CC7W2ANXX.SM2_120717p6_B7


title: PBMC1.CC7W2ANXX.SM2_120717p6_B6


title: Mixture1.CAPTEANXX.SM2_062617p2_G5


title: Cortex1.CCJ15ANXX.SM2_042518p2_B2


title: Cortex1.CCJ15ANXX.SM2_042518p2_B1


title: Mixture1.CAPTEANXX.SM2_062617p2_G3


title: Cortex1.CCJ15ANXX.SM2_042518p2_B12


title: Mixture1.CAPTEANXX.SM2_062617p2_G2


title: Cortex1.CCJ15ANXX.SM2_042518p2_B11


title: Mixture1.CAPTEANXX.SM2_062617p2_G1


title: Mixture1.CAPTEANXX.SM2_062617p2_G11


title: Mixture1.CAPTEANXX.SM2_062617p2_G10


title: Mixture1.CAPTEANXX.SM2_062617p2_F9


title: Cortex1.CCJ15ANXX.SM2_042518p2_B10


title: Mixture1.CAPTEANXX.SM2_062617p2_F8


title: PBMC1.CC7W2ANXX.SM2_120717p6_B3


title: Mixture1.CAPTEANXX.SM2_062617p2_F7


title: PBMC1.CC7W2ANXX.SM2_120717p6_B2


title: Mixture1.CAPTEANXX.SM2_062617p2_F6


title: Mixture1.CAPTEANXX.SM2_062617p2_F5


title: Cortex1.CCJ15ANXX.SM2_042518p2_A8


title: Mixture1.CAPTEANXX.SM2_062617p2_F4


title: PBMC1.CC7W2ANXX.SM2_120717p6_B1


title: Mixture1.CAPTEANXX.SM2_062617p2_G12


title: Mixture1.CAPTEANXX.SM2_062617p2_F3


title: Cortex1.CCJ15ANXX.SM2_042518p2_A7


title: Mixture1.CAPTEANXX.SM2_062617p2_F1


title: Mixture1.CAPTEANXX.SM2_062617p2_F2


title: PBMC1.CC7W2ANXX.SM2_120717p6_B12


title: Mixture1.CAPTEANXX.SM2_062617p2_F12


title: PBMC1.CC7W2ANXX.SM2_120717p6_B5


title: PBMC1.CC7W2ANXX.SM2_120717p6_B11


title: Mixture1.CAPTEANXX.SM2_062617p2_F10


title: Mixture1.CAPTEANXX.SM2_062617p2_E9


title: PBMC1.CC7W2ANXX.SM2_120717p6_B10


title: Cortex1.CCJ15ANXX.SM2_042518p2_A4


title: PBMC1.CC7W2ANXX.SM2_120717p6_B4


title: Cortex1.CCJ15ANXX.SM2_042518p2_A5


title: Mixture1.CAPTEANXX.SM2_062617p2_F11


title: PBMC1.CC7W2ANXX.SM2_120717p6_A9


title: Cortex1.CCJ15ANXX.SM2_042518p2_A3


title: Mixture1.CAPTEANXX.SM2_062617p2_E6


title: Mixture1.CAPTEANXX.SM2_062617p2_E5


title: Mixture1.CAPTEANXX.SM2_062617p2_E4


title: PBMC1.CC7W2ANXX.SM2_120717p6_A7


title: Mixture1.CAPTEANXX.SM2_062617p2_E8


title: PBMC1.CC7W2ANXX.SM2_120717p6_A8


title: Cortex1.CCJ15ANXX.SM2_042518p2_A9


title: Cortex1.CCJ15ANXX.SM2_042518p2_A2


title: Cortex1.CCJ15ANXX.SM2_042518p2_A1


title: Cortex1.CCJ15ANXX.SM2_042518p2_A6


title: PBMC1.CC7W2ANXX.SM2_120717p6_A6


title: Mixture1.CAPTEANXX.SM2_062617p2_E2


title: Mixture1.CAPTEANXX.SM2_062617p2_E1


title: Mixture1.CAPTEANXX.SM2_062617p2_E11


title: Cortex1.CCJ15ANXX.SM2_042518p2_A12


title: Mixture1.CAPTEANXX.SM2_062617p2_E7


title: PBMC1.CC7W2ANXX.SM2_120717p6_A5


title: Mixture1.CAPTEANXX.SM2_062617p2_E12


title: Cortex1.CCJ15ANXX.SM2_042518p2_A11


title: Mixture1.CAPTEANXX.SM2_062617p2_E10


title: Cortex1.CCJ15ANXX.SM2_042518p2_A10


title: PBMC1.CC7W2ANXX.SM2_120717p6_A4


title: Mixture1.CAPTEANXX.SM2_062617p2_D8


title: Cortex1.CCJ15ANXX.SM2_042518p1_H9


title: Mixture1.CAPTEANXX.SM2_062617p2_D7


title: Mixture1.CAPTEANXX.SM2_062617p2_D9


title: PBMC1.CC7W2ANXX.SM2_120717p6_A2


title: Mixture1.CAPTEANXX.SM2_062617p2_E3


title: Mixture1.CAPTEANXX.SM2_062617p2_D5


title: Mixture1.CAPTEANXX.SM2_062617p2_D6


title: Cortex1.CCJ15ANXX.SM2_042518p1_H8


title: Cortex1.CCJ15ANXX.SM2_042518p1_H7


title: Mixture1.CAPTEANXX.SM2_062617p2_D4


title: Mixture1.CAPTEANXX.SM2_062617p2_D3


title: PBMC1.CC7W2ANXX.SM2_120717p6_A1


title: Mixture1.CAPTEANXX.SM2_062617p2_D2


title: Mixture1.CAPTEANXX.SM2_062617p2_D1


title: PBMC1.CC7W2ANXX.SM2_120717p6_A11


title: PBMC1.CC7W2ANXX.SM2_120717p6_A12


title: Cortex1.CCJ15ANXX.SM2_042518p1_H6


title: PBMC1.CC7W2ANXX.SM2_120717p6_A10


title: Cortex1.CCJ15ANXX.SM2_042518p1_H5


title: Mixture1.CAPTEANXX.SM2_062617p2_D11


title: PBMC1.CC7W2ANXX.SM2_120717p6_A3


title: Mixture1.CAPTEANXX.SM2_062617p2_D10


title: Cortex1.CCJ15ANXX.SM2_042518p1_H4


title: Mixture1.CAPTEANXX.SM2_062617p2_C8


title: Mixture1.CAPTEANXX.SM2_062617p2_C9


title: Cortex1.CCJ15ANXX.SM2_042518p1_H3


title: PBMC1.CC7W2ANXX.SM2_120717p5_H8


title: PBMC1.CC7W2ANXX.SM2_120717p5_H9


title: Mixture1.CAPTEANXX.SM2_062617p2_C7


title: Mixture1.CAPTEANXX.SM2_062617p2_C5


title: Cortex1.CCJ15ANXX.SM2_042518p1_H2


title: Mixture1.CAPTEANXX.SM2_062617p2_C4


title: Mixture1.CAPTEANXX.SM2_062617p2_C6


title: Cortex1.CCJ15ANXX.SM2_042518p1_H1


title: Mixture1.CAPTEANXX.SM2_062617p2_C3


title: PBMC1.CC7W2ANXX.SM2_120717p5_H7


title: PBMC1.CC7W2ANXX.SM2_120717p5_H6


title: Mixture1.CAPTEANXX.SM2_062617p2_C2


title: Cortex1.CCJ15ANXX.SM2_042518p1_H12


title: Mixture1.CAPTEANXX.SM2_062617p2_C1


title: Mixture1.CAPTEANXX.SM2_062617p2_C12


title: Mixture1.CAPTEANXX.SM2_062617p2_D12


title: Cortex1.CCJ15ANXX.SM2_042518p1_H11


title: PBMC1.CC7W2ANXX.SM2_120717p5_H5


title: Mixture1.CAPTEANXX.SM2_062617p2_C11


title: Mixture1.CAPTEANXX.SM2_062617p2_B9


title: PBMC1.CC7W2ANXX.SM2_120717p5_H4


title: Mixture1.CAPTEANXX.SM2_062617p2_B8


title: PBMC1.CC7W2ANXX.SM2_120717p5_H3


title: Mixture1.CAPTEANXX.SM2_062617p2_B7


title: Cortex1.CCJ15ANXX.SM2_042518p1_G9


title: PBMC1.CC7W2ANXX.SM2_120717p5_H2


title: Mixture1.CAPTEANXX.SM2_062617p2_B6


title: Mixture1.CAPTEANXX.SM2_062617p2_B5


title: Cortex1.CCJ15ANXX.SM2_042518p1_G8


title: Cortex1.CCJ15ANXX.SM2_042518p1_H10


title: PBMC1.CC7W2ANXX.SM2_120717p5_H1


title: Cortex1.CCJ15ANXX.SM2_042518p1_G7


title: Mixture1.CAPTEANXX.SM2_062617p2_B4


title: Mixture1.CAPTEANXX.SM2_062617p2_B3


title: PBMC1.CC7W2ANXX.SM2_120717p5_H12


title: Mixture1.CAPTEANXX.SM2_062617p2_B2


title: Mixture1.CAPTEANXX.SM2_062617p2_B1


title: Mixture1.CAPTEANXX.SM2_062617p2_B12


title: PBMC1.CC7W2ANXX.SM2_120717p5_H11


title: Mixture1.CAPTEANXX.SM2_062617p2_B11


title: Cortex1.CCJ15ANXX.SM2_042518p1_G5


title: Mixture1.CAPTEANXX.SM2_062617p2_B10


title: PBMC1.CC7W2ANXX.SM2_120717p5_H10


title: Mixture1.CAPTEANXX.SM2_062617p2_C10


title: Mixture1.CAPTEANXX.SM2_062617p2_A9


title: Cortex1.CCJ15ANXX.SM2_042518p1_G4


title: Mixture1.CAPTEANXX.SM2_062617p2_A8


title: PBMC1.CC7W2ANXX.SM2_120717p5_G9


title: Mixture1.CAPTEANXX.SM2_062617p2_A6


title: Mixture1.CAPTEANXX.SM2_062617p2_A7


title: PBMC1.CC7W2ANXX.SM2_120717p5_G8


title: Mixture1.CAPTEANXX.SM2_062617p2_A5


title: Cortex1.CCJ15ANXX.SM2_042518p1_G2


title: Mixture1.CAPTEANXX.SM2_062617p2_A3


title: Mixture1.CAPTEANXX.SM2_062617p2_A4


title: Mixture1.CAPTEANXX.SM2_062617p2_A2


title: Cortex1.CCJ15ANXX.SM2_042518p1_G3


title: Cortex1.CCJ15ANXX.SM2_042518p1_G6


title: Cortex1.CCJ15ANXX.SM2_042518p1_G12


title: PBMC1.CC7W2ANXX.SM2_120717p5_G6


title: PBMC1.CC7W2ANXX.SM2_120717p5_G5


title: Mixture1.CAPTEANXX.SM2_062617p2_A10


title: Mixture1.CAPTEANXX.SM2_062617p2_A12


title: PBMC1.CC7W2ANXX.SM2_120717p5_G7


title: Mixture1.CAPTEANXX.SM2_062617p1_H9


title: Cortex1.CCJ15ANXX.SM2_042518p1_G11


title: PBMC1.CC7W2ANXX.SM2_120717p5_G3


title: Mixture1.CAPTEANXX.SM2_062617p2_A11


title: Mixture1.CAPTEANXX.SM2_062617p1_H7


title: Cortex1.CCJ15ANXX.SM2_042518p1_F9


title: Mixture1.CAPTEANXX.SM2_062617p1_H8


title: Cortex1.CCJ15ANXX.SM2_042518p1_G1


title: Mixture1.CAPTEANXX.SM2_062617p1_H6


title: Mixture1.CAPTEANXX.SM2_062617p1_H5


title: PBMC1.CC7W2ANXX.SM2_120717p5_G2


title: Cortex1.CCJ15ANXX.SM2_042518p1_F8


title: PBMC1.CC7W2ANXX.SM2_120717p5_G1


title: Mixture1.CAPTEANXX.SM2_062617p1_H4


title: Mixture1.CAPTEANXX.SM2_062617p2_A1


title: Mixture1.CAPTEANXX.SM2_062617p1_H3


title: Cortex1.CCJ15ANXX.SM2_042518p1_F7


title: Mixture1.CAPTEANXX.SM2_062617p1_H1


title: Cortex1.CCJ15ANXX.SM2_042518p1_F6


title: Mixture1.CAPTEANXX.SM2_062617p1_H12


title: Cortex1.CCJ15ANXX.SM2_042518p1_F5


title: PBMC1.CC7W2ANXX.SM2_120717p5_G4


title: Cortex1.CCJ15ANXX.SM2_042518p1_G10


title: PBMC1.CC7W2ANXX.SM2_120717p5_G10


title: Mixture1.CAPTEANXX.SM2_062617p1_G9


title: PBMC1.CC7W2ANXX.SM2_120717p5_G11


title: Cortex1.CCJ15ANXX.SM2_042518p1_F4


title: Mixture1.CAPTEANXX.SM2_062617p1_G8


title: PBMC1.CC7W2ANXX.SM2_120717p5_F9


title: Mixture1.CAPTEANXX.SM2_062617p1_G7


title: PBMC1.CC7W2ANXX.SM2_120717p5_F8


title: Cortex1.CCJ15ANXX.SM2_042518p1_F3


title: Mixture1.CAPTEANXX.SM2_062617p1_G5


title: Mixture1.CAPTEANXX.SM2_062617p1_G6


title: Cortex1.CCJ15ANXX.SM2_042518p1_F2


title: PBMC1.CC7W2ANXX.SM2_120717p5_F7


title: PBMC1.CC7W2ANXX.SM2_120717p5_G12


title: Mixture1.CAPTEANXX.SM2_062617p1_G4


title: Mixture1.CAPTEANXX.SM2_062617p1_H2


title: Mixture1.CAPTEANXX.SM2_062617p1_G3


title: Mixture1.CAPTEANXX.SM2_062617p1_G2


title: Cortex1.CCJ15ANXX.SM2_042518p1_F1


title: PBMC1.CC7W2ANXX.SM2_120717p5_F6


title: Cortex1.CCJ15ANXX.SM2_042518p1_F12


title: Mixture1.CAPTEANXX.SM2_062617p1_G1


title: Mixture1.CAPTEANXX.SM2_062617p1_G12


title: Mixture1.CAPTEANXX.SM2_062617p1_H11


title: Mixture1.CAPTEANXX.SM2_062617p1_G11


title: Mixture1.CAPTEANXX.SM2_062617p1_G10


title: Cortex1.CCJ15ANXX.SM2_042518p1_F10


title: Mixture1.CAPTEANXX.SM2_062617p1_H10


title: Cortex1.CCJ15ANXX.SM2_042518p1_F11


title: Mixture1.CAPTEANXX.SM2_062617p1_F8


title: Mixture1.CAPTEANXX.SM2_062617p3_A8


title: PBMC1.CC7W2ANXX.SM2_120717p5_F3


title: Cortex1.CCJ15ANXX.SM2_042518p1_E9


title: Mixture1.CAPTEANXX.SM2_062617p1_F7


title: Mixture1.CAPTEANXX.SM2_062617p1_F6


title: PBMC1.CC7W2ANXX.SM2_120717p5_F2


title: Cortex1.CCJ15ANXX.SM2_042518p1_E8


title: Mixture1.CAPTEANXX.SM2_062617p1_F5


title: Cortex1.CCJ15ANXX.SM2_042518p1_E7


title: PBMC1.CC7W2ANXX.SM2_120717p5_F1


title: Cortex1.CCJ15ANXX.SM2_042518p1_E6


title: PBMC1.CC7W2ANXX.SM2_120717p5_F12


title: Mixture1.CAPTEANXX.SM2_062617p1_F2


title: Mixture1.CAPTEANXX.SM2_062617p1_F3


title: Mixture1.CAPTEANXX.SM2_062617p1_F4


title: PBMC1.CC7W2ANXX.SM2_120717p5_F11


title: Mixture1.CAPTEANXX.SM2_062617p1_F12


title: Cortex1.CCJ15ANXX.SM2_042518p1_E5


title: PBMC1.CC7W2ANXX.SM2_120717p5_F5


title: Mixture1.CAPTEANXX.SM2_062617p1_F1


title: PBMC1.CC7W2ANXX.SM2_120717p5_F4


title: Mixture1.CAPTEANXX.SM2_062617p1_F9


title: PBMC1.CC7W2ANXX.SM2_120717p5_F10


title: Mixture1.CAPTEANXX.SM2_062617p1_E8


title: PBMC1.CC7W2ANXX.SM2_120717p5_E9


title: Mixture1.CAPTEANXX.SM2_062617p1_F10


title: Cortex1.CCJ15ANXX.SM2_042518p1_E4


title: Mixture1.CAPTEANXX.SM2_062617p1_E9


title: Mixture1.CAPTEANXX.SM2_062617p1_E7


title: PBMC1.CC7W2ANXX.SM2_120717p5_E7


title: Mixture1.CAPTEANXX.SM2_062617p1_E4


title: Cortex1.CCJ15ANXX.SM2_042518p1_E2


title: Cortex1.CCJ15ANXX.SM2_042518p1_E3


title: Mixture1.CAPTEANXX.SM2_062617p1_E6


title: Mixture1.CAPTEANXX.SM2_062617p1_E5


title: PBMC1.CC7W2ANXX.SM2_120717p5_E8


title: Mixture1.CAPTEANXX.SM2_062617p1_E3


title: Mixture1.CAPTEANXX.SM2_062617p1_F11


title: Cortex1.CCJ15ANXX.SM2_042518p1_E1


title: Cortex1.CCJ15ANXX.SM2_042518p1_E12


title: Mixture1.CAPTEANXX.SM2_062617p1_E12


title: PBMC1.CC7W2ANXX.SM2_120717p5_E5


title: Mixture1.CAPTEANXX.SM2_062617p1_E11


title: Cortex1.CCJ15ANXX.SM2_042518p1_E11


title: PBMC1.CC7W2ANXX.SM2_120717p5_E4


title: Mixture1.CAPTEANXX.SM2_062617p1_E10


title: Mixture1.CAPTEANXX.SM2_062617p1_D8


title: Mixture1.CAPTEANXX.SM2_062617p1_D9


title: Mixture1.CAPTEANXX.SM2_062617p1_D7


title: Cortex1.CCJ15ANXX.SM2_042518p1_E10


title: Mixture1.CAPTEANXX.SM2_062617p1_D6


title: Cortex1.CCJ15ANXX.SM2_042518p1_D9


title: PBMC1.CC7W2ANXX.SM2_120717p5_E3


title: PBMC1.CC7W2ANXX.SM2_120717p5_E2


title: Mixture1.CAPTEANXX.SM2_062617p1_D4


title: PBMC1.CC7W2ANXX.SM2_120717p5_E1


title: Mixture1.CAPTEANXX.SM2_062617p1_D5


title: Mixture1.CAPTEANXX.SM2_062617p1_D1


title: Cortex1.CCJ15ANXX.SM2_042518p1_D7


title: Mixture1.CAPTEANXX.SM2_062617p1_D2


title: PBMC1.CC7W2ANXX.SM2_120717p5_E12


title: Mixture1.CAPTEANXX.SM2_062617p1_E2


title: PBMC1.CC7W2ANXX.SM2_120717p5_E6


title: Mixture1.CAPTEANXX.SM2_062617p1_E1


title: Mixture1.CAPTEANXX.SM2_062617p1_D3


title: Mixture1.CAPTEANXX.SM2_062617p1_D12


title: Mixture1.CAPTEANXX.SM2_062617p1_D11


title: Cortex1.CCJ15ANXX.SM2_042518p1_D5


title: Mixture1.CAPTEANXX.SM2_062617p1_D10


title: PBMC1.CC7W2ANXX.SM2_120717p5_E10


title: Cortex1.CCJ15ANXX.SM2_042518p1_D4


title: Mixture1.CAPTEANXX.SM2_062617p1_C8


title: PBMC1.CC7W2ANXX.SM2_120717p5_D9


title: Mixture1.CAPTEANXX.SM2_062617p1_C6


title: Mixture1.CAPTEANXX.SM2_062617p1_C7


title: PBMC1.CC7W2ANXX.SM2_120717p5_D8


title: Cortex1.CCJ15ANXX.SM2_042518p1_D3


title: Mixture1.CAPTEANXX.SM2_062617p1_C5


title: Mixture1.CAPTEANXX.SM2_062617p1_C9


title: Cortex1.CCJ15ANXX.SM2_042518p1_D8


title: Mixture1.CAPTEANXX.SM2_062617p1_C4


title: Cortex1.CCJ15ANXX.SM2_042518p1_D1


title: Mixture1.CAPTEANXX.SM2_062617p1_C3


title: PBMC1.CC7W2ANXX.SM2_120717p5_D7


title: Mixture1.CAPTEANXX.SM2_062617p1_C2


title: Cortex1.CCJ15ANXX.SM2_042518p1_D6


title: Cortex1.CCJ15ANXX.SM2_042518p1_D2


title: PBMC1.CC7W2ANXX.SM2_120717p5_D6


title: Mixture1.CAPTEANXX.SM2_062617p1_C1


title: Cortex1.CCJ15ANXX.SM2_042518p1_D11


title: PBMC1.CC7W2ANXX.SM2_120717p5_E11


title: PBMC1.CC7W2ANXX.SM2_120717p5_D5


title: Mixture1.CAPTEANXX.SM2_062617p1_C10


title: Mixture1.CAPTEANXX.SM2_062617p1_C11


title: Mixture1.CAPTEANXX.SM2_062617p1_C12


title: PBMC1.CC7W2ANXX.SM2_120717p5_D4


title: Cortex1.CCJ15ANXX.SM2_042518p1_D10


title: Mixture1.CAPTEANXX.SM2_062617p1_B9


title: PBMC1.CC7W2ANXX.SM2_120717p5_D3


title: Mixture1.CAPTEANXX.SM2_062617p1_B8


title: Mixture1.CAPTEANXX.SM2_062617p1_B7


title: Mixture1.CAPTEANXX.SM2_062617p1_B6


title: PBMC1.CC7W2ANXX.SM2_120717p5_D2


title: Mixture1.CAPTEANXX.SM2_062617p1_B4


title: Cortex1.CCJ15ANXX.SM2_042518p1_C8


title: Cortex1.CCJ15ANXX.SM2_042518p1_C9


title: PBMC1.CC7W2ANXX.SM2_120717p5_D1


title: Mixture1.CAPTEANXX.SM2_062617p1_B3


title: Mixture1.CAPTEANXX.SM2_062617p1_B5


title: Cortex1.CCJ15ANXX.SM2_042518p1_D12


title: Mixture1.CAPTEANXX.SM2_062617p1_B1


title: Mixture1.CAPTEANXX.SM2_062617p1_B2


title: Mixture1.CAPTEANXX.SM2_062617p1_B12


title: Mixture1.CAPTEANXX.SM2_062617p1_B11


title: PBMC1.CC7W2ANXX.SM2_120717p5_D12


title: Mixture1.CAPTEANXX.SM2_062617p1_B10


title: Mixture1.CAPTEANXX.SM2_062617p1_A9


title: PBMC1.CC7W2ANXX.SM2_120717p5_D11


title: Cortex1.CCJ15ANXX.SM2_042518p1_C7


title: Cortex1.CCJ15ANXX.SM2_042518p1_C5


title: PBMC1.CC7W2ANXX.SM2_120717p5_D10


title: Cortex1.CCJ15ANXX.SM2_042518p1_C4


title: PBMC1.CC7W2ANXX.SM2_120717p5_C9


title: Mixture1.CAPTEANXX.SM2_062617p1_A8


title: Cortex1.CCJ15ANXX.SM2_042518p1_C3


title: Mixture1.CAPTEANXX.SM2_062617p1_A7


title: PBMC1.CC7W2ANXX.SM2_120717p5_C8


title: Mixture1.CAPTEANXX.SM2_062617p1_A6


title: Mixture1.CAPTEANXX.SM2_062617p1_A5


title: Mixture1.CAPTEANXX.SM2_062617p1_A3


title: Mixture1.CAPTEANXX.SM2_062617p1_A4


title: Cortex1.CCJ15ANXX.SM2_042518p1_C1


title: Cortex1.CCJ15ANXX.SM2_042518p1_C2


title: Mixture1.CAPTEANXX.SM2_062617p1_A2


title: Mixture1.CAPTEANXX.SM2_062617p1_A1


title: Cortex1.CCJ15ANXX.SM2_042518p1_C12


title: Cortex1.CCJ15ANXX.SM2_042518p1_C6


title: PBMC1.CC7W2ANXX.SM2_120717p5_C7


title: PBMC1.CC7W2ANXX.SM2_120717p5_C5


title: Mixture1.CAPTEANXX.SM2_062617p1_A12


title: Mixture1.CAPTEANXX.SM2_062617p1_A11


title: Cortex1.CCJ15ANXX.SM2_042518p1_C11


title: PBMC1.CC7W2ANXX.SM2_120717p5_C3


title: Mixture1.CAPTEANXX.SciSeq10_C7


title: Mixture1.CAPTEANXX.SciSeq10_C6


title: Cortex1.CCJ15ANXX.SM2_042518p1_C10


title: Mixture1.CAPTEANXX.SM2_062617p1_A10


title: PBMC1.CC7W2ANXX.SM2_120717p5_C2


title: Mixture1.CAPTEANXX.SciSeq10_C5


title: PBMC1.CC7W2ANXX.SM2_120717p5_C1


title: Cortex1.CCJ15ANXX.SM2_042518p1_B7


title: Mixture1.CAPTEANXX.SciSeq10_C2


title: PBMC1.CC7W2ANXX.SM2_120717p5_C12


title: PBMC1.CC7W2ANXX.SM2_120717p5_C6


title: Cortex1.CCJ15ANXX.SM2_042518p1_B9


title: Cortex1.CCJ15ANXX.SM2_042518p1_B6


title: Mixture1.CAPTEANXX.SciSeq10_C4


title: Mixture1.CAPTEANXX.SciSeq10_C3


title: PBMC1.CC7W2ANXX.SM2_120717p5_C4


title: PBMC1.CC7W2ANXX.SM2_120717p5_C11


title: Mixture1.CAPTEANXX.SciSeq10_C10


title: Mixture1.CAPTEANXX.SciSeq10_C11


title: Cortex1.CCJ15ANXX.SM2_042518p1_B5


title: Mixture1.CAPTEANXX.SciSeq10_C9


title: Mixture1.CAPTEANXX.SciSeq10_C8


title: Mixture1.CAPTEANXX.SciSeq10_B9


title: Mixture1.CAPTEANXX.SciSeq10_B8


title: PBMC1.CC7W2ANXX.SM2_120717p5_C10


title: Cortex1.CCJ15ANXX.SM2_042518p1_B4


title: Mixture1.CAPTEANXX.SciSeq10_C12


title: Mixture1.CAPTEANXX.SciSeq10_C1


title: Mixture1.CAPTEANXX.SciSeq10_B7


title: Cortex1.CCJ15ANXX.SM2_042518p1_B8


title: Cortex1.CCJ15ANXX.SM2_042518p1_B3


title: PBMC1.CC7W2ANXX.SM2_120717p5_B8


title: Mixture1.CAPTEANXX.SciSeq10_B5


title: Mixture1.CAPTEANXX.SciSeq10_B6


title: Cortex1.CCJ15ANXX.SM2_042518p1_B2


title: Mixture1.CAPTEANXX.SciSeq10_B4


title: Mixture1.CAPTEANXX.SciSeq10_B2


title: PBMC1.CC7W2ANXX.SM2_120717p5_B6


title: Mixture1.CAPTEANXX.SciSeq10_B3


title: Cortex1.CCJ15ANXX.SM2_042518p1_B1


title: Mixture1.CAPTEANXX.SciSeq10_B1


title: Cortex1.CCJ15ANXX.SM2_042518p1_B12


title: Mixture1.CAPTEANXX.SciSeq10_B12


title: Mixture1.CAPTEANXX.SciSeq10_B11


title: PBMC1.CC7W2ANXX.SM2_120717p5_B5


title: Cortex1.CCJ15ANXX.SM2_042518p1_B11


title: Mixture1.CAPTEANXX.SciSeq10_A9


title: Mixture1.CAPTEANXX.SciSeq10_B10


title: Mixture1.CAPTEANXX.SciSeq10_A8


title: PBMC1.CC7W2ANXX.SM2_120717p5_B9


title: PBMC1.CC7W2ANXX.SM2_120717p5_B3


title: PBMC1.CC7W2ANXX.SM2_120717p5_B4


title: Cortex1.CCJ15ANXX.SM2_042518p1_A9


title: Cortex1.CCJ15ANXX.SM2_042518p1_B10


title: Mixture1.CAPTEANXX.SciSeq10_A6


title: PBMC1.CC7W2ANXX.SM2_120717p5_B2


title: Mixture1.CAPTEANXX.SciSeq10_A5


title: Cortex1.CCJ15ANXX.SM2_042518p1_A8


title: Mixture1.CAPTEANXX.SciSeq10_A4


title: PBMC1.CC7W2ANXX.SM2_120717p5_B7


title: PBMC1.CC7W2ANXX.SM2_120717p5_B1


title: Mixture1.CAPTEANXX.SciSeq10_A3


title: Cortex1.CCJ15ANXX.SM2_042518p1_A7


title: Mixture1.CAPTEANXX.SciSeq10_A2


title: PBMC1.CC7W2ANXX.SM2_120717p5_B12


title: Cortex1.CCJ15ANXX.SM2_042518p1_A6


title: Mixture1.CAPTEANXX.SciSeq10_A12


title: PBMC1.CC7W2ANXX.SM2_120717p5_B11


title: Cortex1.CCJ15ANXX.SM2_042518p1_A5


title: Mixture1.CAPTEANXX.SciSeq10_A1


title: Mixture1.CAPTEANXX.SciSeq10_A11


title: Mixture1.CAPTEANXX.SciSeq10_A7


title: PBMC1.CC7W2ANXX.SM2_120717p5_A9


title: Mixture1.CAPTEANXX.inDrops


title: Cortex1.CCJ15ANXX.SM2_042518p1_A3


title: PBMC1.CC7W2ANXX.SM2_120717p5_B10


title: PBMC1.CC7W2ANXX.SM2_120717p5_A8


title: Mixture1.CAPTEANXX.SeqWell


title: Mixture1.HJTJGBCX2.inDrops


title: Mixture1.CAPTEANXX.DropSeq


title: Mixture1.CAPTEANXX.SciSeq10_A10


title: Cortex1.CCJ15ANXX.SM2_042518p1_A4


title: Mixture1.CAPTEANXX.CELseq4


title: Cortex1.CCJ15ANXX.SM2_042518p1_A2


title: Mixture1.CAPTEANXX.CELseq3


title: PBMC1.CC7W2ANXX.SM2_120717p5_A7


title: Cortex1.CCJ15ANXX.SM2_042518p1_A1


title: PBMC1.CC7W2ANXX.SM2_120717p5_A5


title: Mixture1.CAPTEANXX.10X_C


title: Mixture1.CAPTEANXX.CELseq1


title: Cortex1.CCJ15ANXX.SM2_042518p1_A12


title: Mixture1.CAPTEANXX.10X_D


title: Mixture1.CAPTEANXX.10X_A


title: PBMC1.CC7W2ANXX.SM2_120717p5_A4


title: Mixture1.CAPTEANXX.10X_B


title: Cortex1.CCJ15ANXX.SM2_042518p1_A10


title: amplicon.species_mix.CALR

city: New York

first: Kyu-Tae

last: Kim

state: New York

address: 101 Avenue of the Americas

institute: New York Genome Center

data_processing:
10x data was processed using Cell Ranger 2.1.0 using default parameters. RNA reads were aligned to the human or mouse referece genome, or human and mouse reference concatenation for species mixing experiment.
Amplicon reads was processed following steps: 1) Identification of reads with proper priming, 2) Identification of cell barcodes (CB) that match with the whitelisted CB, 3) Replacement of CB that are not perfectly matched with the whitelist CB, 4) Deduplication of reads, and 5) Analyze reads with CB that are also observed in the 10x scRNA-seq data.
Output matrices processed from amplicon data have three columns: barcodes (BC), number of wildtype calls (num.WT.call), and number of mutant calls (num.MUT.call).
Genome_build: GRCh38 or hg19/mm10

source_name: mixing UT7 & Ba/F3, amplicon, straight

extract_protocol:
Cryopreserved patient samples approved by the Institutional Review Board of Memorial Sloan-Kettering Cancer Center were thawed and stained using standard procedures (10 min, 4°C) with the surface antibody CD34-PE-Vio770 (clone AC136, Miltenyi Biotec) and DAPI (Sigma-Aldrich). Cells were then sorted for DAPI-negative, CD34+ and CD34-negative cells using BD Influx. For the species mixing experiment, human MPL expressing Ba/F3 and UT-7 cell lines were generated by retroviral transduction, after which they were subjected to infection with CALR  variant lentiviral supernatants. Wildtype UT7 cells and mutant Ba/F3 cells were mixed in equal proportions.
The standard 10x Genomics Chromium v.2 protocol was carried out according to manufacturer’s recommendations (10x Genomics, Pleasanton, CA) until after emulsion breakage and recovery of first strand cDNA. If the targeted gene of interest, e.g. SF3B1, was not robustly detected by the standard 10x procedure (i.e. if <60% of the expected cells showed expression) based on a priori knowledge in a similar dataset, a gene-specific primer was spiked into 10x primer mix at 1% of the concentration of the cDNA amplification primers for the initial cDNA PCR step. Then, during the amplification step, the 10x cDNA library underwent an extra cycle of PCR beyond the manufacturer’s recommended number of cycles. After cleanup with SPRIselect, a small portion of the cDNA library, 3 µL (~10% of total) was aliquoted for targeted genotyping, and the remaining cDNA underwent the standard 10x protocol. The cDNA set aside for GoT was amplified for 3 to 4 additional cycles using KAPA HiFi HotStart ReadyMix (KAPABiosystems) and 10x primer mix to provide sufficient material for the enrichment step. After clean-up, locus-specific reverse primers and the generic forward SI-PCR were used to amplify the site of interest of the cDNA template (Supplementary Table 3) using ~10 PCR cycles. The locus-specific reverse primers contain a partial Illumina read 2 handle, a stagger to increase the complexity of the library for optimal sequencing and a gene specific region to allow specific priming. The SI-PCR oligo (10x) anneals to the partial Illumina read 1 sequence at the 3’ end of the molecule, preserving the cell barcode (CB) and UMI. After the initial amplification and SPRI purification to remove unincorporated primers, a second PCR was performed with a generic forward PCR primer (P5_generic) to retain the CB and UMI together with an RPI-x primer (Illumina) to complete the P7 end of the library and add a sample index. The targeted amplicon library was subsequently spiked into the remainder of the 10x library to be sequenced together on a HiSeq 2500 or sequenced separately on MiSeq with v3 chemistry (Illumina). The cycle settings were as follows: 26 cycles for read 1, 98 or 130 cycles for read 2, and 8 cycles for sample index.

tag: source

value: mixing study

tag: targeted mutation

tag: vaf (targeted exon sequencing)

value: missing

tag: diagnosis

tag: wbc(k/mcl)

tag: hg(g/dl)

tag: platelets(k/mcl)

tag: pb blast count

tag: bm blast count

tag: bm fibrosis

tag: treatment


title: PBMC1.CC7W2ANXX.SM2_120717p5_A3

tag: Sex

tag: library construction


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H9

description:
scRNA-seq
3'-end
cortex_mm10_count_matrix.mtx, cortex_mm10_gene.tsv, cortex_mm10_cell.tsv

tag: age

tag: strain


title: PBMC1.CC7W2ANXX.SM2_120717p5_A2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H8


title: PBMC1.CC7W2ANXX.SM2_120717p5_A1


title: Mixture1.CAPTEANXX.CELseq2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H7


title: PBMC1.CC7W2ANXX.SM2_120717p5_A6


title: Cortex1.CCJ15ANXX.SM2_042518p1_A11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H6


title: PBMC1.CC7W2ANXX.SM2_120717p5_A12


title: Mixture2.CBU1CANXX.SM2_103117p4_H8


title: Mixture2.CBU1CANXX.SM2_103117p4_H6


title: Mixture2.CBU1CANXX.SM2_103117p4_H9


title: PBMC1.CC7W2ANXX.SM2_120717p5_A11


title: Mixture2.CBU1CANXX.SM2_103117p4_H3


title: Mixture2.CBU1CANXX.SM2_103117p4_H1


title: Mixture2.CBU1CANXX.SM2_103117p4_H7


title: Mixture2.CBU1CANXX.SM2_103117p4_H4


title: Mixture2.CBU1CANXX.SM2_103117p4_H5


title: PBMC1.CC7W2ANXX.SM2_120717p5_A10


title: Mixture2.CBU1CANXX.SM2_103117p4_H2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H4


title: Mixture2.CBU1CANXX.SM2_103117p4_H10


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H5


title: Mixture2.CBU1CANXX.SM2_103117p4_G9


title: PBMC1.CC7W2ANXX.SM2_120717p4_H9


title: 10x.species_mix

data_processing:
10x data was processed using Cell Ranger 2.1.0 using default parameters. RNA reads were aligned to the human or mouse referece genome, or human and mouse reference concatenation for species mixing experiment.
Amplicon reads was processed following steps: 1) Identification of reads with proper priming, 2) Identification of cell barcodes (CB) that match with the whitelisted CB, 3) Replacement of CB that are not perfectly matched with the whitelist CB, 4) Deduplication of reads, and 5) Analyze reads with CB that are also observed in the 10x scRNA-seq data.
Genome_build: GRCh38 or hg19/mm10
Supplementary_files_format_and_content: counts

source_name: mixing UT7 & Ba/F3, scRNA-seq


title: Mixture2.CBU1CANXX.SM2_103117p4_H12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H3


title: Mixture2.CBU1CANXX.SM2_103117p4_G8


title: PBMC1.CC7W2ANXX.SM2_120717p4_H8


title: Mixture2.CBU1CANXX.SM2_103117p4_G7


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H2


title: Mixture2.CBU1CANXX.SM2_103117p4_G6


title: Mixture2.CBU1CANXX.SM2_103117p4_G5


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H1


title: Mixture2.CBU1CANXX.SM2_103117p4_G3


title: Mixture2.CBU1CANXX.SM2_103117p4_G2


title: PBMC1.CC7W2ANXX.SM2_120717p4_H5


title: Mixture2.CBU1CANXX.SM2_103117p4_G1


title: Mixture2.CBU1CANXX.SM2_103117p4_G12


title: Mixture2.CBU1CANXX.SM2_103117p4_G4


title: PBMC1.CC7W2ANXX.SM2_120717p4_H6


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H12


title: Mixture2.CBU1CANXX.SM2_103117p4_H11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_H10


title: Mixture2.CBU1CANXX.SM2_103117p4_G11


title: PBMC1.CC7W2ANXX.SM2_120717p4_H3


title: Mixture2.CBU1CANXX.SM2_103117p4_F9


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G9


title: PBMC1.CC7W2ANXX.SM2_120717p4_H2


title: Mixture2.CBU1CANXX.SM2_103117p4_G10


title: Mixture2.CBU1CANXX.SM2_103117p4_F7


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G8


title: Mixture2.CBU1CANXX.SM2_103117p4_F6


title: PBMC1.CC7W2ANXX.SM2_120717p4_H7


title: Mixture2.CBU1CANXX.SM2_103117p4_F5


title: PBMC1.CC7W2ANXX.SM2_120717p4_H1


title: Mixture2.CBU1CANXX.SM2_103117p4_F4


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G7


title: Mixture2.CBU1CANXX.SM2_103117p4_F3


title: PBMC1.CC7W2ANXX.SM2_120717p4_H4


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G6


title: Mixture2.CBU1CANXX.SM2_103117p4_F1


title: Mixture2.CBU1CANXX.SM2_103117p4_F2


title: Mixture2.CBU1CANXX.SM2_103117p4_F12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G5


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G4


title: Mixture2.CBU1CANXX.SM2_103117p4_F11


title: PBMC1.CC7W2ANXX.SM2_120717p4_G9


title: Mixture2.CBU1CANXX.SM2_103117p4_F10


title: Mixture2.CBU1CANXX.SM2_103117p4_F8


title: Mixture2.CBU1CANXX.SM2_103117p4_E7


title: PBMC1.CC7W2ANXX.SM2_120717p4_H12


title: Mixture2.CBU1CANXX.SM2_103117p4_E6


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G2


title: PBMC1.CC7W2ANXX.SM2_120717p4_G7


title: Mixture2.CBU1CANXX.SM2_103117p4_E5


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G1


title: Mixture2.CBU1CANXX.SM2_103117p4_E4


title: Mixture2.CBU1CANXX.SM2_103117p4_E3


title: PBMC1.CC7W2ANXX.SM2_120717p4_G6


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G12


title: PBMC1.CC7W2ANXX.SM2_120717p4_G5


title: Mixture2.CBU1CANXX.SM2_103117p4_E2


title: PBMC1.CC7W2ANXX.SM2_120717p4_H11


title: Mixture2.CBU1CANXX.SM2_103117p4_E1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G11


title: PBMC1.CC7W2ANXX.SM2_120717p4_H10


title: Mixture2.CBU1CANXX.SM2_103117p4_E12


title: PBMC1.CC7W2ANXX.SM2_120717p4_G4


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G3


title: Mixture2.CBU1CANXX.SM2_103117p4_E11


title: Mixture2.CBU1CANXX.SM2_103117p4_E8


title: Mixture2.CBU1CANXX.SM2_103117p4_E10


title: PBMC1.CC7W2ANXX.SM2_120717p4_G8


title: Mixture2.CBU1CANXX.SM2_103117p4_D9


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F9


title: Mixture2.CBU1CANXX.SM2_103117p4_E9


title: Mixture2.CBU1CANXX.SM2_103117p4_D8


title: PBMC1.CC7W2ANXX.SM2_120717p4_G3


title: Mixture2.CBU1CANXX.SM2_103117p4_D6


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F8


title: PBMC1.CC7W2ANXX.SM2_120717p4_G1


title: Mixture2.CBU1CANXX.SM2_103117p4_D7


title: Mixture2.CBU1CANXX.SM2_103117p4_D5


title: Mixture2.CBU1CANXX.SM2_103117p4_D4


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F7


title: PBMC1.CC7W2ANXX.SM2_120717p4_G12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F6


title: PBMC1.CC7W2ANXX.SM2_120717p4_G11


title: Mixture2.CBU1CANXX.SM2_103117p4_D2


title: Mixture2.CBU1CANXX.SM2_103117p4_D3


title: Mixture2.CBU1CANXX.SM2_103117p4_D1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F5


title: PBMC1.CC7W2ANXX.SM2_120717p4_G10


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_G10


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F4


title: Mixture2.CBU1CANXX.SM2_103117p4_D12


title: PBMC1.CC7W2ANXX.SM2_120717p4_F9


title: PBMC1.CC7W2ANXX.SM2_120717p4_G2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F3


title: Mixture2.CBU1CANXX.SM2_103117p4_C7


title: Mixture2.CBU1CANXX.SM2_103117p4_C8


title: Mixture2.CBU1CANXX.SM2_103117p4_C9


title: PBMC1.CC7W2ANXX.SM2_120717p4_F7


title: Mixture2.CBU1CANXX.SM2_103117p4_D10


title: Mixture2.CBU1CANXX.SM2_103117p4_C6


title: Mixture2.CBU1CANXX.SM2_103117p4_C5


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F1


title: PBMC1.CC7W2ANXX.SM2_120717p4_F6


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F12


title: Mixture2.CBU1CANXX.SM2_103117p4_C2


title: Mixture2.CBU1CANXX.SM2_103117p4_C4


title: PBMC1.CC7W2ANXX.SM2_120717p4_F5


title: Mixture2.CBU1CANXX.SM2_103117p4_C12


title: Mixture2.CBU1CANXX.SM2_103117p4_C11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F11


title: Mixture2.CBU1CANXX.SM2_103117p4_D11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_F10


title: Mixture2.CBU1CANXX.SM2_103117p4_C10


title: PBMC1.CC7W2ANXX.SM2_120717p4_F8


title: Mixture2.CBU1CANXX.SM2_103117p4_B9


title: Mixture2.CBU1CANXX.SM2_103117p4_B8


title: PBMC1.CC7W2ANXX.SM2_120717p4_F2


title: PBMC1.CC7W2ANXX.SM2_120717p4_F3


title: Mixture2.CBU1CANXX.SM2_103117p4_B7


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E7


title: Mixture2.CBU1CANXX.SM2_103117p4_B6


title: PBMC1.CC7W2ANXX.SM2_120717p4_F1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E8


title: Mixture2.CBU1CANXX.SM2_103117p4_C3


title: PBMC1.CC7W2ANXX.SM2_120717p4_F12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E9


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E6


title: PBMC1.CC7W2ANXX.SM2_120717p4_F11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E5


title: Mixture2.CBU1CANXX.SM2_103117p4_B4


title: Mixture2.CBU1CANXX.SM2_103117p4_B3


title: Mixture2.CBU1CANXX.SM2_103117p4_B2


title: Mixture2.CBU1CANXX.SM2_103117p4_C1


title: Mixture2.CBU1CANXX.SM2_103117p4_B1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E4


title: Mixture2.CBU1CANXX.SM2_103117p4_B10


title: PBMC1.CC7W2ANXX.SM2_120717p4_F4


title: Mixture2.CBU1CANXX.SM2_103117p4_B11


title: PBMC1.CC7W2ANXX.SM2_120717p4_F10


title: Mixture2.CBU1CANXX.SM2_103117p4_A9


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E3


title: Mixture2.CBU1CANXX.SM2_103117p4_A8


title: PBMC1.CC7W2ANXX.SM2_120717p4_E9


title: PBMC1.CC7W2ANXX.SM2_120717p4_E8


title: Mixture2.CBU1CANXX.SM2_103117p4_A7


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E2


title: Mixture2.CBU1CANXX.SM2_103117p4_A6


title: PBMC1.CC7W2ANXX.SM2_120717p4_E7


title: Mixture2.CBU1CANXX.SM2_103117p4_A5


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E1


title: Mixture2.CBU1CANXX.SM2_103117p4_A4


title: Mixture2.CBU1CANXX.SM2_103117p4_B12


title: Mixture2.CBU1CANXX.SM2_103117p4_A3


title: PBMC1.CC7W2ANXX.SM2_120717p4_E6


title: PBMC1.CC7W2ANXX.SM2_120717p4_E5


title: Mixture2.CBU1CANXX.SM2_103117p4_A1


title: Mixture2.CBU1CANXX.SM2_103117p4_A2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E11


title: Mixture2.CBU1CANXX.SM2_103117p4_A12


title: Mixture2.CBU1CANXX.SM2_103117p4_A11


title: Mixture2.CBU1CANXX.SM2_103117p4_A10


title: PBMC1.CC7W2ANXX.SM2_120717p4_E4


title: PBMC1.CC7W2ANXX.SM2_120717p4_E3


title: Mixture2.CBU1CANXX.SM2_103117p3_H8


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E10


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D9


title: PBMC1.CC7W2ANXX.SM2_120717p4_E2


title: Mixture2.CBU1CANXX.SM2_103117p4_B5


title: Mixture2.CBU1CANXX.SM2_103117p3_H9


title: Mixture2.CBU1CANXX.SM2_103117p3_H7


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D8


title: Mixture2.CBU1CANXX.SM2_103117p3_H4


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D7


title: Mixture2.CBU1CANXX.SM2_103117p3_H5


title: Mixture2.CBU1CANXX.SM2_103117p3_H6


title: PBMC1.CC7W2ANXX.SM2_120717p4_E12


title: Mixture2.CBU1CANXX.SM2_103117p3_H3


title: Mixture2.CBU1CANXX.SM2_103117p3_H2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_E12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D6


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D5


title: Mixture2.CBU1CANXX.SM2_103117p3_H12


title: Mixture2.CBU1CANXX.SM2_103117p3_H1


title: Mixture2.CBU1CANXX.SM2_103117p3_H11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D4


title: PBMC1.CC7W2ANXX.SM2_120717p4_E10


title: PBMC1.CC7W2ANXX.SM2_120717p4_E11


title: PBMC1.CC7W2ANXX.SM2_120717p4_D9


title: Mixture2.CBU1CANXX.SM2_103117p3_G8


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D2


title: PBMC1.CC7W2ANXX.SM2_120717p4_D8


title: PBMC1.CC7W2ANXX.SM2_120717p4_D7


title: PBMC1.CC7W2ANXX.SM2_120717p4_E1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D3


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D1


title: Mixture2.CBU1CANXX.SM2_103117p3_G6


title: Mixture2.CBU1CANXX.SM2_103117p3_G5


title: Mixture2.CBU1CANXX.SM2_103117p3_G7


title: PBMC1.CC7W2ANXX.SM2_120717p4_D6


title: Mixture2.CBU1CANXX.SM2_103117p3_G3


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D12


title: PBMC1.CC7W2ANXX.SM2_120717p4_D4


title: Mixture2.CBU1CANXX.SM2_103117p3_G2


title: Mixture2.CBU1CANXX.SM2_103117p3_G12


title: Mixture2.CBU1CANXX.SM2_103117p3_G4


title: Mixture2.CBU1CANXX.SM2_103117p3_G1


title: Mixture2.CBU1CANXX.SM2_103117p3_G11


title: Mixture2.CBU1CANXX.SM2_103117p3_H10


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D10


title: Mixture2.CBU1CANXX.SM2_103117p3_G10


title: PBMC1.CC7W2ANXX.SM2_120717p4_D2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C9


title: Mixture2.CBU1CANXX.SM2_103117p3_F4


title: Mixture2.CBU1CANXX.SM2_103117p3_F5


title: Mixture2.CBU1CANXX.SM2_103117p3_F9


title: Mixture2.CBU1CANXX.SM2_103117p3_F7


title: PBMC1.CC7W2ANXX.SM2_120717p4_D12


title: Mixture2.CBU1CANXX.SM2_103117p3_F8


title: Mixture2.CBU1CANXX.SM2_103117p3_G9


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C7


title: Mixture2.CBU1CANXX.SM2_103117p3_F12


title: Mixture2.CBU1CANXX.SM2_103117p3_F6


title: PBMC1.CC7W2ANXX.SM2_120717p4_D1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C8


title: PBMC1.CC7W2ANXX.SM2_120717p4_D11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C6


title: Mixture2.CBU1CANXX.SM2_103117p3_F3


title: Mixture2.CBU1CANXX.SM2_103117p3_F2


title: Mixture2.CBU1CANXX.SM2_103117p3_F1


title: PBMC1.CC7W2ANXX.SM2_120717p4_D5


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C5


title: Mixture2.CBU1CANXX.SM2_103117p3_F10


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_D11


title: Mixture2.CBU1CANXX.SM2_103117p3_E9


title: PBMC1.CC7W2ANXX.SM2_120717p4_D10


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C4


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C3


title: PBMC1.CC7W2ANXX.SM2_120717p4_C9


title: PBMC1.CC7W2ANXX.SM2_120717p4_D3


title: Mixture2.CBU1CANXX.SM2_103117p3_E8


title: Mixture2.CBU1CANXX.SM2_103117p3_F11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C2


title: Mixture2.CBU1CANXX.SM2_103117p3_E5


title: Mixture2.CBU1CANXX.SM2_103117p3_E7


title: PBMC1.CC7W2ANXX.SM2_120717p4_C8


title: Mixture2.CBU1CANXX.SM2_103117p3_E2


title: PBMC1.CC7W2ANXX.SM2_120717p4_C5


title: PBMC1.CC7W2ANXX.SM2_120717p4_C6


title: Mixture2.CBU1CANXX.SM2_103117p3_E4


title: Mixture2.CBU1CANXX.SM2_103117p3_E1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C10


title: PBMC1.CC7W2ANXX.SM2_120717p4_C7


title: Mixture2.CBU1CANXX.SM2_103117p3_D9


title: Mixture2.CBU1CANXX.SM2_103117p3_E3


title: Mixture2.CBU1CANXX.SM2_103117p3_E10


title: Mixture2.CBU1CANXX.SM2_103117p3_E6


title: Mixture2.CBU1CANXX.SM2_103117p3_E12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B9


title: Mixture2.CBU1CANXX.SM2_103117p3_D8


title: Mixture2.CBU1CANXX.SM2_103117p3_E11


title: PBMC1.CC7W2ANXX.SM2_120717p4_C2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B8


title: Mixture2.CBU1CANXX.SM2_103117p3_D6


title: Mixture2.CBU1CANXX.SM2_103117p3_D5


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_C11


title: PBMC1.CC7W2ANXX.SM2_120717p4_C12


title: Mixture2.CBU1CANXX.SM2_103117p3_D4


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B7


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B6


title: PBMC1.CC7W2ANXX.SM2_120717p4_C11


title: Mixture2.CBU1CANXX.SM2_103117p3_D3


title: Mixture2.CBU1CANXX.SM2_103117p3_D2


title: Mixture2.CBU1CANXX.SM2_103117p3_D12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B5


title: Mixture2.CBU1CANXX.SM2_103117p3_D1


title: PBMC1.CC7W2ANXX.SM2_120717p4_C10


title: Mixture2.CBU1CANXX.SM2_103117p3_D10


title: Mixture2.CBU1CANXX.SM2_103117p3_C9


title: Mixture2.CBU1CANXX.SM2_103117p3_D11


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B3


title: PBMC1.CC7W2ANXX.SM2_120717p4_B9


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B4


title: Mixture2.CBU1CANXX.SM2_103117p3_C8


title: Mixture2.CBU1CANXX.SM2_103117p3_C6


title: Mixture2.CBU1CANXX.SM2_103117p3_C7


title: PBMC1.CC7W2ANXX.SM2_120717p4_B8


title: Mixture2.CBU1CANXX.SM2_103117p3_D7


title: PBMC1.CC7W2ANXX.SM2_120717p4_C1


title: PBMC1.CC7W2ANXX.SM2_120717p4_B7


title: Mixture2.CBU1CANXX.SM2_103117p3_C5


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B1


title: Mixture2.CBU1CANXX.SM2_103117p3_C3


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B12


title: Mixture2.CBU1CANXX.SM2_103117p3_C4


title: PBMC1.CC7W2ANXX.SM2_120717p4_B5


title: PBMC1.CC7W2ANXX.SM2_120717p4_B6


title: Mixture2.CBU1CANXX.SM2_103117p3_C1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B11


title: Mixture2.CBU1CANXX.SM2_103117p3_C12


title: PBMC1.CC7W2ANXX.SM2_120717p4_B4


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_B10


title: PBMC1.CC7W2ANXX.SM2_120717p4_B3


title: Mixture2.CBU1CANXX.SM2_103117p3_B9


title: Mixture2.CBU1CANXX.SM2_103117p3_C10


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A9


title: Mixture2.CBU1CANXX.SM2_103117p3_B8


title: Mixture2.CBU1CANXX.SM2_103117p3_B7


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A7


title: PBMC1.CC7W2ANXX.SM2_120717p4_B1


title: Mixture2.CBU1CANXX.SM2_103117p3_B6


title: Mixture2.CBU1CANXX.SM2_103117p3_B5


title: Mixture2.CBU1CANXX.SM2_103117p3_B4


title: PBMC1.CC7W2ANXX.SM2_120717p4_B12


title: Mixture2.CBU1CANXX.SM2_103117p3_B3


title: Mixture2.CBU1CANXX.SM2_103117p3_C2


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A6


title: Mixture2.CBU1CANXX.SM2_103117p3_B2


title: PBMC1.CC7W2ANXX.SM2_120717p4_B11


title: Mixture2.CBU1CANXX.SM2_103117p3_C11


title: PBMC1.CC7W2ANXX.SM2_120717p4_B10


title: Mixture2.CBU1CANXX.SM2_103117p3_B1


title: Mixture2.CBU1CANXX.SM2_103117p3_B11


title: Mixture2.CBU1CANXX.SM2_103117p3_B12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A4


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A5


title: PBMC1.CC7W2ANXX.SM2_120717p4_A9


title: Mixture2.CBU1CANXX.SM2_103117p3_A9


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A3


title: Mixture2.CBU1CANXX.SM2_103117p3_B10


title: PBMC1.CC7W2ANXX.SM2_120717p4_B2


title: PBMC1.CC7W2ANXX.SM2_120717p4_A8


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A8


title: Mixture2.CBU1CANXX.SM2_103117p3_A7


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A2


title: Mixture2.CBU1CANXX.SM2_103117p3_A6


title: PBMC1.CC7W2ANXX.SM2_120717p4_A7


title: Mixture2.CBU1CANXX.SM2_103117p3_A4


title: Mixture2.CBU1CANXX.SM2_103117p3_A5


title: PBMC1.CC7W2ANXX.SM2_120717p4_A6


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A1


title: Mixture2.CBU1CANXX.SM2_103117p3_A3


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A12


title: Mixture2.CBU1CANXX.SM2_103117p3_A2


title: PBMC1.CC7W2ANXX.SM2_120717p4_A5


title: Mixture2.CBU1CANXX.SM2_103117p3_A1


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A11


title: PBMC1.CC7W2ANXX.SM2_120717p4_A4


title: Mixture2.CBU1CANXX.SM2_103117p3_A12


title: Mixture2.CBU1CANXX.SM2_103117p3_A11


title: Mixture2.CBU1CANXX.SM2_103117p3_A8


title: Mixture2.CBU1CANXX.SM2_103117p3_A10


title: Cortex1.CCLBDANXX.042518-DroNcSeq

value: DroNc-seq


title: Mixture2.CBU1CANXX.SM2_103117p2_H9


title: PBMC1.CC7W2ANXX.SM2_120717p4_A2


title: Mixture2.CBU1CANXX.SM2_103117p2_H8


title: Cortex1.CCKVLANXX.10X_2D


title: Mixture2.CBU1CANXX.SM2_103117p2_H7


title: Mixture2.CBU1CANXX.SM2_103117p2_H6


title: Mixture2.CBU1CANXX.SM2_103117p2_H5


title: Cortex1.CCKVLANXX.10X_2C


title: Mixture2.CBU1CANXX.SM2_103117p2_H4


title: Mixture2.CBU1CANXX.SM2_103117p2_H3


title: Cortex1.CCKVLANXX.10X_2B


title: PBMC1.CC7W2ANXX.SM2_120717p4_A12


title: Mixture2.CBU1CANXX.SM2_103117p2_H2


title: PBMC1.CC7W2ANXX.SM2_120717p4_A11


title: Mixture2.CBU1CANXX.SM2_103117p2_H1


title: Cortex1.CCKVLANXX.10X_2A


title: PBMC1.CC7W2ANXX.SM2_120717p4_A10


title: Mixture2.CBU1CANXX.SM2_103117p2_H12


title: Cortex1.CCJ15ANXX.042518-SciSeq-p2_A10


title: Cortex1.CCKVLANXX.042518-DroNcSeq


title: PBMC1.CC7W2ANXX.SM2_120717p4_A3


title: PBMC1.CC7W2ANXX.SM2_120717p3_H6


title: Mixture2.CBU1CANXX.SM2_103117p2_H11


title: Mixture2.CBU1CANXX.SM2_103117p2_H10


title: Mixture2.CBU1CANXX.SM2_103117p2_G9


title: PBMC1.CC7W2ANXX.SM2_120717p4_A1


title: PBMC1.CC7W2ANXX.SM2_120717p3_H5


title: Cortex1.CCJ15ANXX.10X_2C


title: Mixture2.CBU1CANXX.SM2_103117p2_G7


title: Mixture2.CBU1CANXX.SM2_103117p2_G6


title: Cortex1.CCJ15ANXX.10X_2B


title: PBMC1.CC7W2ANXX.SM2_120717p3_H4


title: Mixture2.CBU1CANXX.SM2_103117p2_G5


title: Cortex1.CCJ15ANXX.10X_2A


title: PBMC1.CC7W2ANXX.SM2_120717p3_H2


title: Mixture2.CBU1CANXX.SM2_103117p2_G4


title: Mixture2.CBU1CANXX.SM2_103117p2_G3


title: PBMC1.CC7W2ANXX.SM2_120717p3_H1


title: PBMC1.CC7W2ANXX.SM2_120717p3_G6


title: Cortex1.CCJ15ANXX.10X_2D


title: OL DIV3-2

type: RNA

city: Kamakura

first: Satoshi

last: Kondo

state: Kanagawa

address: Tebiro 6-10-1

department: New Projects Development Division

country: Japan

institute: Toray Industries,Inc.

description: Rat mRNA comparison

hyb_protocol: Hybridized for 16 h at 37 C with rotary shake (250 rpm). Hybridization buffer and washing protocol was followed by the protocol supplied by TORAY Industries, Inc..

scan_protocol: 3D-Gene Scanner ((Toray Industries Inc., Tokyo, Japan) was used for scanning. Images were quantified using Extraction(Toray Industries Inc., Tokyo, Japan).

data_processing: The raw data of each spot was normalized by substitution with a mean intensity of the background signal determined by all blank spots’ signal intensities of 95% confidence intervals.

organism: Rattus norvegicus

source_name: Rat oligodendrocyte precursors

label_protocol: Amino Allyl aRNA was synthesis by Amino Allyl MessageAmp II aRNA Amplification Kit (Ambion#1753). CyeDye Coupling and fragmentation were performed as the protocol supplied by TORAY Industries, Inc..

growth_protocol: Rat oligodendrocyte precursors are cultured in standard Raff medium and grown.

extract_protocol: RNA samples were extracted from cells using RNesy mini kit (Quiagen).

treatment_protocol: Rat oligodendrocyte precursors are cultured in Raff medium and allowed to be differentiated in standard grwoth factor changes.

tag: lymphocyte

value: Rat oligodendrocyte precursors

tag: cit induced switching

value: Differentiated condition (after differentiation)


title: PBMC1.CC7W2ANXX.SM2_120717p3_G5


title: AGM3_GFPpAPCp

city: Edinburgh

first: Elaine

last: Dzierzak

address: 47 Little France Crescent

country: United Kingdom

institute: The University of Edinburgh

data_processing:
Fastq files of 51bp single-end reads were quality controlled using FASTQC. Reads were then aligned to the GENCODE M14 mouse reference genome (mm10) using STAR aligner (version 2.3) for Linux Ubuntu, with default options, and ran over 8 threads per sample. For improved accuracy, the exon junction coordinates from the reference annotation were used. Resulting BAM files from different lanes were merged into one sample. Gene quantification on the merged samples was performed using featureCounts from the subRead package.
Genome_build: GENCODE Mouse Genome Release M14 (GRCm38.p5)
Supplementary_files_format_and_content: tab-delimited files per sample  include raw counts

extract_protocol:
AGM were dissected from E10.5 MacGreen embryos, lysed with collagenase for 45 minutes at 37˚C and the cells were then FACS-sorted according to GFP and CD206-APC expression.
RNA was exctracted with the RNeasy micro kit (Qiagen) and RNA libraries were prepared for sequencing using standard Illumina protocols

value: MacGreen (Csf1r-EGFP)

tag: developemental stage

tag: region

value: aorta-gonad- mesonephros (AGM)

tag: cell population


title: OL DIV3-1

description: Rat mRNA comparison


title: OL DIV0-2

description: Rat mRNA comparison

value: Control condition (before differentiation)


title: AGM2_GFPpAPCn


title: AGM2_GFPpAPCp


title: Mixture2.CBU1CANXX.SM2_103117p2_G8

value: Pooled male and female


title: AGM3_GFPpAPCn


title: Mixture2.CBU1CANXX.SM2_103117p2_G1


title: PBMC1.CC7W2ANXX.SM2_120717p3_G4


title: Mixture2.CBU1CANXX.SM2_103117p2_G12


title: PBMC1.CC7W2ANXX.SM2_120717p3_H3


title: AGM1_GFPpAPCp


title: MHC-II0:CD8ab Tg CD4-CD8- mature thymocytes 1

city: Kyoto

first: Wooseok

last: Seo

address: Yoshida-Konoe-cho, Sakyo-ku

institute: Kyoto University Graduate School of Medicine

data_processing:
Reads were mapped by Tophat v2.1.1 onto mouse genome mm10 and counts were generated using HTSeq v.0.6.1.
Genome_build: mm10 (GRCm38)
Supplementary_files_format_and_content: *_counts.txt: Read count by genes. WT counts were obtained from GSE48138.

source_name: Mouse CD8+ mature thymocytes

extract_protocol: Sequencing libraries were prepared by NEBNext RNA Library Prep Kit for Illumina according to the manufacturer’s protocol (NEB, E7530). Single end 50bp reads were obtained by Illumina HiSeq 1500.

tag: strain/background

tag: genotype/variation

value: MHC-II0:CD8ab Tg

tag: cell type

value: CD8+ mature thymocytes


title: OL DIV0-1

description: Rat mRNA comparison


title: Mixture2.CBU1CANXX.SM2_103117p2_G11


title: PBMC1.CC7W2ANXX.SM2_120717p3_G3