title: UHMK1_siRNA_HepG2_24hrs_#3

city: Mannheim

first: Carsten

last: Sticht

address: Theodor-Kutzer-Ufer

department: ZMF

institute: University Heidelberg

description: HepG2 cells were transiently transfected with UHMK1-specific siRNA

hyb_protocol: Hybridization (16h x 45°C) was processed according to the standard Affymetrix protocol.

scan_protocol: Affymetrix GeneArray Scanner3000

data_processing: The data were analyzed with the software Transcriptome Analysis Console, version 4.0, from Affymetrix. Gene expression profiling was performed using arrays of human Clariom-D-type from Affymetrix. The analysis type was Expression (Gene + Exon). For the summarization the option Gene + Exon - SST-RMA was used.

source_name: liver cancer

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol.

growth_protocol: HepG2 cells were cultured in RPMI medium supplemented with 10% FCS and 1% penicillin/streptomycin.

extract_protocol: For isolation of total RNA, the NucleoSpin RNA II kit was used according to the manufacturer's instructions (Machery-Nagel, Düren, Germany).

treatment_protocol: Transient transfection of siRNAs was done with Lipofectamine® RNAiMAX (Life Technologies, Darmstadt, Germany) according to the manufacturers protocol (siRNA concentration: 30 nM).

tag: cell line

value: liver cancer

tag: sirna

value: siU


title: SKIN_HV1_duplicate2

status: Public on Jun 17 2019

type: SRA

city: Seoul

first: Doyoung

last: Kim

address: 50-1 Yonsei-ro Seodaemun-gu

department: Dermatology

country: South Korea

institute: Yonsei University College of Medicine

description:
SKIN_HV1_F2
Healthy volunteer
Single-cell RNA-Seq

library_source: transcriptomic

data_processing:
CellRanger (10X Genomics) pipelines were used for demultiplexing base calls into Fastq, filtering, barcode counting and filtering, UMI counting and alignment with reference human genome GRCh38.
The quality control, normalization, linear regression of number of UMIs and scaling were performed using Seurat (v2.3.4).
Two different groups (disease vs. healthy volunteers, pre- vs. post-treatment) were aligned using canonical correlation analysis by Seurat package (v2.3.4).
Genome_build: GRCh38
Supplementary_files_format_and_content: *.h5: Filtered gene expression matrices with cells identified as cell barcodes and the values representing gene UMI counts.

molecule: total RNA

organism: Homo sapiens

source_name: Skin biopsy from HV1 (duplicate 2)

extract_protocol: Samples were prepared using 10X Genomics Chromium 5' kit and 3' kit (v2).

tag: disease diagnosis

value: Healthy

tag: tissue

value: Skin

tag: manipulation

value: Freshly isolated


title: UHMK1_siRNA_HepG2_24hrs_#2

status: Public on Jun 18 2019

type: RNA

country: Germany

label: biotin

tag: cell type


title: UCC2003 Lactulose vs Ribose

city: Madrid

first: Laura

last: Ruiz-Aceituno

state: Madrid

address: Nicolas Cabrera, 9

department: CIAL

country: Spain

institute: CSIC

description:
Sample 5
Biological replicate 1

hyb_protocol: Labelled cDNA was hybridized using the Agilent Gene Expression hybridization kit (part number 5188-5242) as described in the Agilent Two-Color Microarray-Based Gene Expression Analysis v4.0 manual (G4140-90050).

scan_protocol: Following hybridization, all microarrays were washed in accordance with Agilent’s standard procedures and scanned using an Agilent DNA microarray scanner (model G2565A).

data_processing: Generated scans were converted to data files with Agilent's Feature Extraction software (Version 9.5).  Data processing  DNA-microarray data were processed as previously described (Garcia De La Nava, J., D. F. Santaella, J. C. Alba, J. M. Carazo, O. Trelles & A. Pascual-Montano, (2003) Engene: the processing and exploratory analysis of gene expression data. Bioinformatics 19: 657-658., van Hijum, S. A. F. T., J. Garcia De La Nava, O. Trelles, J. Kok & O. P. Kuipers, (2003) MicroPreP: a cDNA microarray data pre-processing framework. Appl. Bioinformatics. 2: 241-244., van Hijum, S. A. F. T., J. A. De, R. J. Baerends, H. A. Karsens, N. E. Kramer, R. Larsen, C. D. den Hengst, C. J. Albers, J. Kok & O. P. Kuipers, (2005) A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data. BMC.Genomics 6: 77). Data were Lowess normalized.

organism: Bifidobacterium breve UCC2003

source_name: Bifidobacterium breve UCC2003 WT

label_protocol: Labelling was performed as described previously (van Hijum, S. A. F. T., J. A. De, R. J. Baerends, H. A. Karsens, N. E. Kramer, R. Larsen, C. D. den Hengst, C. J. Albers, J. Kok & O. P. Kuipers, (2005) A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data. BMC.Genomics 6: 77).

growth_protocol: Bifidobacterium breve UCC2003 cultures were grown separately in modified de Man, Rogosa and Sharpe (mMRS) medium (De Man, J. C., A. Rogosa & M. E. Sharpe, (1960) A medium for the cultivation of lactobacilli. J. Appl. Bacteriol. 23: 130-135), made from first principles, supplemented with 0.05% (w/v) L-cysteine-HCl (Sigma-Aldrich, Steinhein, Germany) and 1% (w/v) of  4-galactosyl kojibiose,  kojibiose, lactulose, lactulosucrose or ribose as the sole carbon source. Strain was grown under anaerobic conditions in a Modular Atmosphere Controlled System (Davidson & Hardy Ltd., Dublin, Ireland) untill OD600 was 0.5.  Growth protocol  Method for cell disruption was performed as described previously (van Hijum, S. A. F. T., J. A. De, R. J. Baerends, H. A. Karsens, N. E. Kramer, R. Larsen, C. D. den Hengst, C. J. Albers, J. Kok & O. P. Kuipers, (2005) A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data. BMC.Genomics 6: 77).

extract_protocol: RNA isolation, RNA quality control and complementary DNA synthesis was performed as described previously (Pokusaeva et al., 2009)(van Hijum, S. A. F. T., J. A. De, R. J. Baerends, H. A. Karsens, N. E. Kramer, R. Larsen, C. D. den Hengst, C. J. Albers, J. Kok & O. P. Kuipers, 2005) A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data. BMC.Genomics 6: 77).

tag: genotype

value: WT

tag: carbon source

value: Bifidobacterium breve UCC2003 grown on Lactulose

value: Bifidobacterium breve UCC2003 grown on Ribose


title: SKIN_HV1_duplicate1

description:
SKIN_HV1_F1
Healthy volunteer
Single-cell RNA-Seq

source_name: Skin biopsy from HV1 (duplicate 1)


title: scrambled_siRNA_HepG2_24hrs_#3

description: HepG2 cells were transiently transfected with nonsense/scrambled siRNA

value: NTC


title: UCC2003 Kojibiose vs Ribose

description:
Sample 1
Biological replicate 1

value: Bifidobacterium breve UCC2003 grown on Kojibiose


title: UHMK1_siRNA_HepG2_24hrs_#1


title: PBMC_LTT2_BACT

description:
DRESS_Day4_BACT
Patient with drug-induced hypersensitivity syndrome.
Single-cell RNA-Seq

source_name: Cultured PBMC with SMX/TMP alone

value: DRESS

value: PBMC

value: Cultured


title: UCC2003 4-Galactosyl kojibiose vs Ribose Dye Swap

description:
Sample 4
Biological replicate 2

value: Bifidobacterium breve UCC2003 grown on 4-Galactosyl kojibiose


title: PBMC_LTT2_TOFA

description:
DRESS_Day4_TOFA
Patient with drug-induced hypersensitivity syndrome.
Single-cell RNA-Seq

source_name: Cultured PBMC with SMX/TMP and tofacitinib


title: PBMC_LTT1_BACT

description:
PBMC_T4_BACT
Patient with drug-induced hypersensitivity syndrome.
Single-cell RNA-Seq

source_name: Cultured PBMC with SMX/TMP


title: PBMC_PRE

description:
PBMC_DRESS1
Patient with drug-induced hypersensitivity syndrome.
Single-cell RNA-Seq

source_name: PBMC from the DRESS patient before treatment


title: SKIN_DRESS

description:
Skin_Dress1
Patient with drug-induced hypersensitivity syndrome.
Single-cell RNA-Seq

source_name: Skin biopsy from the DRESS patient


title: Pt2A N2 HAR control DNA rep3

city: Luebeck

first: Martin

last: Kircher

state: SH

address: Ratzeburger Allee 160

department: Humangenetics

institute: University of Luebeck

description: telencephalon

library_source: genomic

data_processing:
Library strategy: lentivirus-based massively parallel reporter assay (lentiMPRA)
Libraries were sequenced on MiSeq or NextSeq 500 instruments (Illumina) and base called using the instruments' Real Time Analysis softwarre. Multiplexed paired end (PE) Illumina sequencing data was split based on sample barcodes allowing up to one substitution in the barcode sequence.
Paired-end reads shorter or equal to read length were consensus called and adapter trimmed.
To normalize RNA and DNA for different sequencing depths in each sample, we divided reads by the sum of observed counts and reported them as counts per million. Only barcodes observed in RNA and DNA of the same sample were considered.
Barcodes (consensus called paired-end reads) and UMI sequences containing unresolved bases (N) or not matching the designed length of 15bp were excluded. For the HAR control experiments, the control design was combined with the regular HAR design (see human submission). Each barcode x UMI pair was counted only once and only barcodes matching perfectly to those included the oligo design considered. To determine RNA/DNA ratios per insert, we summed up the counts of all barcodes belonging to the same insert and determined the ratio of the average of normalized counts.
ChIP-seq peaks were called using the ENCODE pipeline with default parameters (https://github.com/ENCODE-DCC/chip-seq-pipeline2), aligned to panTro5 and lifted over to GRCh37.
Genome_build: GRCh37
Supplementary_files_format_and_content: All processed data files are in gzip-compressed tab-separated text file format. DNA.tsv.gz and RNA.tsv.gz files contain assigned RNA and DNA barcode counts. HARcontrol_design.tsv.gz contains all additional designed control oligo sequences.

molecule: genomic DNA

organism: Pan troglodytes

source_name: Chimpanzee neural progenitor cells

growth_protocol:
http://www.pnas.org/content/107/11/5254.short
Chimpanzee iPSC-derived neural progenitor cells were maintained in N2B27 media supplemented with 20ng/mL bFGF and EGF on matrigel-coated dishes.

extract_protocol:
The cells were washed with PBS three times, and genomic DNA and total RNA was extracted using AllPrep DNA/RNA mini kit (Qiagen). Messenger RNA (mRNA) was purified from the total RNA using Oligotex mRNA mini kit (Qiagen) and treated with Turbo DNase to remove contaminating DNA.
mRNA was reverse transcribed with SuperScript II (Invitrogen) using a primer downstream from the barcode. Resulting cDNA was split into multiple reactions to reduce PCR jack-potting effects and cDNA amplification performed with Kapa Robust polymerase for three cycles, incorporating unique molecular identifiers (UMIs) of 10 bp length. PCR products were cleaned with AMPure XP beads (Beckman Coulter) to remove primers and concentrate samples. These products underwent a second round of amplification in 8 reactions per replicate for 15 cycles, with a reverse primer containing only P7. All reactions were pooled and run on agarose gels for size selection and submitted for sequencing. For DNA, each replicate was amplified for 3 cycles with UMI-incorporating primers, just as the RNA. First round products were cleaned up with AMPure XP beads, and amplified in split reactions, each for 20 cycles. Again, reactions were pooled and gel-purified and sequenced.

treatment_protocol: For the lentiMPRA, 6 million chimpanzee iPSC-derived neural progenitor cells were plated on a 15 cm dish and cultured for 24 hours. The cells were infected with integrating lentivirus libraries and incubated for 4 days, when they have an estimated 50-100 viral particles/cell. Three independent replicate cultures were infected.

tag: iPSc line name

value: iPSC-derived neural progenitors

tag: developmental stage


title: Pt2A N2 HAR control RNA rep3

description: telencephalon

molecule: polyA RNA


title: Pt2A N2 HAR control DNA rep1

description: telencephalon


title: scrambled_siRNA_HepG2_24hrs_#1


title: PBMC_HV

description:
PBMC_HV
Healthy volunteer
Single-cell RNA-Seq

source_name: PBMC from a sex- and age-matched healthy volunteer (HV)


title: Pt2A N2 HAR control DNA rep2

description: telencephalon


title: Pt2A N2 HAR control RNA rep2

description: telencephalon


title: PBMC_LTT1_CTRL

description:
PBMC_T4_CTRL
Patient with drug-induced hypersensitivity syndrome.
Single-cell RNA-Seq

source_name: Cultured PBMC without SMX/TMP


title: PBMC_POST

description:
PBMC_POST2W
Patient with drug-induced hypersensitivity syndrome.
Single-cell RNA-Seq

source_name: PBMC from the DRESS patient 2 weeks after treatment


title: Pt2A N2 HAR control RNA rep1

description: telencephalon


title: scrambled_siRNA_HepG2_24hrs_#2


title: Tabula Muris Senis (bulk RNA-seq) [P7_384Bulk_Plate2_S367]

city: San Francisco

first: Angela

last: Oliveira Pisco

state: CA

address: 499 Illinois St

department: Data Science

country: USA

institute: Chan Zuckerberg Biohub

description: processed data file: 190214_A00111_0269_AHH3J3DSXX__190214_A00111_0270_BHHMFWDSXX.csv

data_processing:
Sequences from the NovaSeq were de-multiplexed using bcl2fastq version 2.19.0.316.
Reads were aligned to the mm10plus genome using STAR version 2.5.2b with parameters TK.
Gene counts were produced using HTSEQ version 0.6.1p1 with default parameters, except ‘stranded’ was set to ‘false’, and ‘mode’ was set to ‘intersection-nonempty’.
Genome_build: GRCm38
Supplementary_files_format_and_content: 190214_A00111_0269_AHH3J3DSXX__190214_A00111_0270_BHHMFWDSXX.csv: Comma-separated text file includes gene count table for all organs and ages.
Supplementary_files_format_and_content: MACA_Bulk_metadata.csv: Comma-separated text file includes experiment metadata.

organism: Mus musculus

extract_protocol:
RNeasy (mini and micro) Qiagen RNA isolation from homogenized tissue.
Smart-Seq2 for preparation of cDNA followed by library preparation using Nextera XT.
Nextera tagmentation according to the standard protocol for single cell RNA-seq following Smart-Seq2.

tag: strain/background

value: BAT

tag: age

value: 6 months postnatal

tag: Sex

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [P7_384Bulk_Plate3_S367]

value: Kidney

value: 15 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [P9_384Bulk_Plate1_S369]

value: WBC

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P5_384Bulk_Plate1_S365]

value: Limb Muscle

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P6_384Bulk_Plate2_S366]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [P8_384Bulk_Plate2_S368]

value: Brain


title: Tabula Muris Senis (bulk RNA-seq) [P8_384Bulk_Plate3_S368]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P9_384Bulk_Plate2_S369]

value: Spleen


title: Tabula Muris Senis (bulk RNA-seq) [P5_384Bulk_Plate3_S365]

value: Skin


title: Tabula Muris Senis (bulk RNA-seq) [P8_384Bulk_Plate1_S368]


title: Tabula Muris Senis (bulk RNA-seq) [P6_384Bulk_Plate3_S366]


title: Tabula Muris Senis (bulk RNA-seq) [P9_384Bulk_Plate3_S369]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P4_384Bulk_Plate3_S364]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [P4_384Bulk_Plate1_S364]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P4_384Bulk_Plate2_S364]

value: MAT


title: Tabula Muris Senis (bulk RNA-seq) [P3_384Bulk_Plate1_S363]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P3_384Bulk_Plate2_S363]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [P23_384Bulk_Plate2_S383]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P22_384Bulk_Plate2_S382]

value: Kidney

value: 27 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [P23_384Bulk_Plate1_S383]

value: Pancreas

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P21_384Bulk_Plate1_S381]

value: Marrow

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P21_384Bulk_Plate2_S381]

value: BAT

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P20_384Bulk_Plate2_S380]

value: GAT


title: Tabula Muris Senis (bulk RNA-seq) [P22_384Bulk_Plate1_S382]


title: Tabula Muris Senis (bulk RNA-seq) [P7_384Bulk_Plate1_S367]


title: Tabula Muris Senis (bulk RNA-seq) [P2_384Bulk_Plate3_S362]

value: Skin


title: Tabula Muris Senis (bulk RNA-seq) [P6_384Bulk_Plate1_S366]

value: Spleen


title: Tabula Muris Senis (bulk RNA-seq) [P5_384Bulk_Plate2_S365]


title: Tabula Muris Senis (bulk RNA-seq) [P2_384Bulk_Plate2_S362]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [P19_384Bulk_Plate2_S379]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P2_384Bulk_Plate1_S362]

value: Heart

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P3_384Bulk_Plate3_S363]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P16_384Bulk_Plate1_S376]

value: Bone


title: Tabula Muris Senis (bulk RNA-seq) [P18_384Bulk_Plate2_S378]


title: Tabula Muris Senis (bulk RNA-seq) [P19_384Bulk_Plate1_S379]


title: Tabula Muris Senis (bulk RNA-seq) [P18_384Bulk_Plate1_S378]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [P17_384Bulk_Plate2_S377]

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [P14_384Bulk_Plate3_S374]

value: missing


title: Tabula Muris Senis (bulk RNA-seq) [P15_384Bulk_Plate1_S375]

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P14_384Bulk_Plate2_S374]

value: Pancreas


title: Tabula Muris Senis (bulk RNA-seq) [P20_384Bulk_Plate1_S380]

value: 6 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [P15_384Bulk_Plate2_S375]

value: Brain

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P16_384Bulk_Plate2_S376]

value: GAT

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P13_384Bulk_Plate2_S373]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P13_384Bulk_Plate1_S373]


title: Tabula Muris Senis (bulk RNA-seq) [P13_384Bulk_Plate3_S373]


title: Tabula Muris Senis (bulk RNA-seq) [P11_384Bulk_Plate3_S371]

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P14_384Bulk_Plate1_S374]

value: SCAT


title: Tabula Muris Senis (bulk RNA-seq) [P12_384Bulk_Plate3_S372]

value: Limb Muscle


title: Tabula Muris Senis (bulk RNA-seq) [P11_384Bulk_Plate1_S371]


title: Tabula Muris Senis (bulk RNA-seq) [P10_384Bulk_Plate2_S370]


title: Tabula Muris Senis (bulk RNA-seq) [P1_384Bulk_Plate2_S361]

value: Small Intestine

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P10_384Bulk_Plate1_S370]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [P1_384Bulk_Plate3_S361]

value: Heart

value: 15 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [P17_384Bulk_Plate1_S377]

value: Kidney

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O9_384Bulk_Plate1_S345]

value: Bone


title: Tabula Muris Senis (bulk RNA-seq) [O9_384Bulk_Plate2_S345]


title: Tabula Muris Senis (bulk RNA-seq) [P12_384Bulk_Plate1_S372]

value: BAT


title: Tabula Muris Senis (bulk RNA-seq) [O9_384Bulk_Plate3_S345]


title: Tabula Muris Senis (bulk RNA-seq) [O6_384Bulk_Plate2_S342]

value: Spleen

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O8_384Bulk_Plate1_S344]

value: Pancreas

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [O6_384Bulk_Plate3_S342]


title: Tabula Muris Senis (bulk RNA-seq) [O6_384Bulk_Plate1_S342]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O8_384Bulk_Plate3_S344]

value: MAT


title: Tabula Muris Senis (bulk RNA-seq) [O7_384Bulk_Plate1_S343]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [O5_384Bulk_Plate1_S341]


title: Tabula Muris Senis (bulk RNA-seq) [O4_384Bulk_Plate3_S340]

value: SCAT

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O5_384Bulk_Plate2_S341]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P11_384Bulk_Plate2_S371]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [O7_384Bulk_Plate2_S343]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [P1_384Bulk_Plate1_S361]

value: Marrow

value: 1 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [O8_384Bulk_Plate2_S344]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [P10_384Bulk_Plate3_S370]

value: BAT


title: Tabula Muris Senis (bulk RNA-seq) [O3_384Bulk_Plate2_S339]

value: Skin


title: Tabula Muris Senis (bulk RNA-seq) [O7_384Bulk_Plate3_S343]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O3_384Bulk_Plate3_S339]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [O4_384Bulk_Plate2_S340]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [O4_384Bulk_Plate1_S340]

value: Pancreas


title: Tabula Muris Senis (bulk RNA-seq) [O23_384Bulk_Plate1_S359]

value: GAT


title: Tabula Muris Senis (bulk RNA-seq) [O23_384Bulk_Plate2_S359]

value: WBC

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O3_384Bulk_Plate1_S339]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [O22_384Bulk_Plate2_S358]

value: Spleen


title: Tabula Muris Senis (bulk RNA-seq) [O21_384Bulk_Plate2_S357]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [O22_384Bulk_Plate1_S358]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O5_384Bulk_Plate3_S341]

value: Limb Muscle


title: Tabula Muris Senis (bulk RNA-seq) [O21_384Bulk_Plate1_S357]

value: Liver

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O20_384Bulk_Plate2_S356]

value: Heart

value: 3 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [O2_384Bulk_Plate3_S338]

value: BAT

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O20_384Bulk_Plate1_S356]

value: Bone


title: Tabula Muris Senis (bulk RNA-seq) [O2_384Bulk_Plate1_S338]

value: MAT

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O19_384Bulk_Plate2_S355]


title: Tabula Muris Senis (bulk RNA-seq) [O19_384Bulk_Plate1_S355]


title: Tabula Muris Senis (bulk RNA-seq) [O18_384Bulk_Plate2_S354]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [O18_384Bulk_Plate1_S354]

value: Marrow

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O17_384Bulk_Plate2_S353]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [O11_384Bulk_Plate3_S347]

value: GAT


title: Tabula Muris Senis (bulk RNA-seq) [O15_384Bulk_Plate2_S351]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O13_384Bulk_Plate2_S349]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O11_384Bulk_Plate2_S347]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [O16_384Bulk_Plate2_S352]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O14_384Bulk_Plate2_S350]

value: SCAT


title: Tabula Muris Senis (bulk RNA-seq) [O14_384Bulk_Plate3_S350]

value: missing


title: Tabula Muris Senis (bulk RNA-seq) [O12_384Bulk_Plate3_S348]

value: Limb Muscle

value: 24 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [O17_384Bulk_Plate1_S353]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O16_384Bulk_Plate1_S352]

value: Brain


title: Tabula Muris Senis (bulk RNA-seq) [O11_384Bulk_Plate1_S347]


title: Tabula Muris Senis (bulk RNA-seq) [O13_384Bulk_Plate3_S349]

value: Skin

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O12_384Bulk_Plate1_S348]


title: Tabula Muris Senis (bulk RNA-seq) [O10_384Bulk_Plate3_S346]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [O12_384Bulk_Plate2_S348]

value: BAT


title: Tabula Muris Senis (bulk RNA-seq) [O2_384Bulk_Plate2_S338]

value: Pancreas

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O10_384Bulk_Plate1_S346]

value: Bone

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O1_384Bulk_Plate2_S337]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [O15_384Bulk_Plate1_S351]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [O1_384Bulk_Plate1_S337]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N9_384Bulk_Plate2_S321]


title: Tabula Muris Senis (bulk RNA-seq) [N9_384Bulk_Plate3_S321]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [O14_384Bulk_Plate1_S350]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N8_384Bulk_Plate2_S320]

value: Marrow


title: Tabula Muris Senis (bulk RNA-seq) [N8_384Bulk_Plate1_S320]

value: Liver

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [N7_384Bulk_Plate3_S319]

value: Limb Muscle

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N8_384Bulk_Plate3_S320]

value: Spleen


title: Tabula Muris Senis (bulk RNA-seq) [O13_384Bulk_Plate1_S349]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [N7_384Bulk_Plate2_S319]

value: Brain

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [N6_384Bulk_Plate3_S318]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N6_384Bulk_Plate2_S318]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N5_384Bulk_Plate2_S317]

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N5_384Bulk_Plate3_S317]


title: Tabula Muris Senis (bulk RNA-seq) [N4_384Bulk_Plate1_S316]


title: Tabula Muris Senis (bulk RNA-seq) [N5_384Bulk_Plate1_S317]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [N4_384Bulk_Plate2_S316]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N4_384Bulk_Plate3_S316]

value: MAT


title: Tabula Muris Senis (bulk RNA-seq) [N3_384Bulk_Plate1_S315]

value: Skin

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N23_384Bulk_Plate2_S335]

value: Bone


title: Tabula Muris Senis (bulk RNA-seq) [N3_384Bulk_Plate2_S315]


title: Tabula Muris Senis (bulk RNA-seq) [N9_384Bulk_Plate1_S321]

value: GAT

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N22_384Bulk_Plate1_S334]

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [N23_384Bulk_Plate1_S335]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N22_384Bulk_Plate2_S334]


title: Tabula Muris Senis (bulk RNA-seq) [N20_384Bulk_Plate1_S332]

value: Spleen


title: Tabula Muris Senis (bulk RNA-seq) [N20_384Bulk_Plate2_S332]


title: Tabula Muris Senis (bulk RNA-seq) [N21_384Bulk_Plate2_S333]


title: Tabula Muris Senis (bulk RNA-seq) [N21_384Bulk_Plate1_S333]

value: Limb Muscle


title: Tabula Muris Senis (bulk RNA-seq) [N2_384Bulk_Plate2_S314]


title: Tabula Muris Senis (bulk RNA-seq) [N19_384Bulk_Plate1_S331]

value: Pancreas


title: Tabula Muris Senis (bulk RNA-seq) [N2_384Bulk_Plate3_S314]

value: Brain


title: Tabula Muris Senis (bulk RNA-seq) [N2_384Bulk_Plate1_S314]

value: Small Intestine

value: 18 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [N18_384Bulk_Plate2_S330]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N6_384Bulk_Plate1_S318]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [O10_384Bulk_Plate2_S346]


title: Tabula Muris Senis (bulk RNA-seq) [N7_384Bulk_Plate1_S319]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [N17_384Bulk_Plate1_S329]

value: SCAT

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N16_384Bulk_Plate2_S328]

value: Marrow

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N16_384Bulk_Plate1_S328]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [N18_384Bulk_Plate1_S330]

value: MAT

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N3_384Bulk_Plate3_S315]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [N17_384Bulk_Plate2_S329]

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [N13_384Bulk_Plate3_S325]

value: BAT


title: Tabula Muris Senis (bulk RNA-seq) [N14_384Bulk_Plate1_S326]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N15_384Bulk_Plate1_S327]

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N14_384Bulk_Plate2_S326]

value: Pancreas


title: Tabula Muris Senis (bulk RNA-seq) [N14_384Bulk_Plate3_S326]

value: missing


title: Tabula Muris Senis (bulk RNA-seq) [N12_384Bulk_Plate2_S324]

value: Brain

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N13_384Bulk_Plate1_S325]

value: Spleen


title: Tabula Muris Senis (bulk RNA-seq) [N12_384Bulk_Plate1_S324]

value: Limb Muscle


title: Tabula Muris Senis (bulk RNA-seq) [N11_384Bulk_Plate3_S323]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [N19_384Bulk_Plate2_S331]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N11_384Bulk_Plate1_S323]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [N13_384Bulk_Plate2_S325]

value: GAT


title: Tabula Muris Senis (bulk RNA-seq) [N12_384Bulk_Plate3_S324]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [N10_384Bulk_Plate3_S322]


title: Tabula Muris Senis (bulk RNA-seq) [N15_384Bulk_Plate2_S327]


title: Tabula Muris Senis (bulk RNA-seq) [N1_384Bulk_Plate1_S313]


title: Tabula Muris Senis (bulk RNA-seq) [N1_384Bulk_Plate3_S313]


title: Tabula Muris Senis (bulk RNA-seq) [N11_384Bulk_Plate2_S323]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [N10_384Bulk_Plate1_S322]


title: Tabula Muris Senis (bulk RNA-seq) [M9_384Bulk_Plate3_S297]


title: Tabula Muris Senis (bulk RNA-seq) [N1_384Bulk_Plate2_S313]


title: Tabula Muris Senis (bulk RNA-seq) [M9_384Bulk_Plate2_S297]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [M8_384Bulk_Plate1_S296]

value: Bone

value: 3 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [M8_384Bulk_Plate3_S296]


title: Tabula Muris Senis (bulk RNA-seq) [M7_384Bulk_Plate3_S295]


title: Tabula Muris Senis (bulk RNA-seq) [M9_384Bulk_Plate1_S297]


title: Tabula Muris Senis (bulk RNA-seq) [M7_384Bulk_Plate2_S295]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M7_384Bulk_Plate1_S295]


title: Tabula Muris Senis (bulk RNA-seq) [M5_384Bulk_Plate3_S293]

value: Small Intestine

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M6_384Bulk_Plate2_S294]

value: Pancreas


title: Tabula Muris Senis (bulk RNA-seq) [M6_384Bulk_Plate3_S294]

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M6_384Bulk_Plate1_S294]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [M4_384Bulk_Plate1_S292]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [M5_384Bulk_Plate1_S293]

value: Spleen

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [M4_384Bulk_Plate3_S292]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M5_384Bulk_Plate2_S293]

value: Limb Muscle


title: Tabula Muris Senis (bulk RNA-seq) [M3_384Bulk_Plate3_S291]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M4_384Bulk_Plate2_S292]

value: SCAT


title: Tabula Muris Senis (bulk RNA-seq) [N10_384Bulk_Plate2_S322]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M3_384Bulk_Plate1_S291]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [M23_384Bulk_Plate1_S311]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M23_384Bulk_Plate2_S311]

value: Marrow

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [M3_384Bulk_Plate2_S291]

value: MAT


title: Tabula Muris Senis (bulk RNA-seq) [M22_384Bulk_Plate2_S310]

value: BAT


title: Tabula Muris Senis (bulk RNA-seq) [M22_384Bulk_Plate1_S310]

value: Skin


title: Tabula Muris Senis (bulk RNA-seq) [M21_384Bulk_Plate1_S309]

value: GAT


title: Tabula Muris Senis (bulk RNA-seq) [M21_384Bulk_Plate2_S309]


title: Tabula Muris Senis (bulk RNA-seq) [M8_384Bulk_Plate2_S296]

value: Small Intestine

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M20_384Bulk_Plate1_S308]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M2_384Bulk_Plate2_S290]

value: 3 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [M20_384Bulk_Plate2_S308]

value: Limb Muscle


title: Tabula Muris Senis (bulk RNA-seq) [M2_384Bulk_Plate3_S290]

value: Bone


title: Tabula Muris Senis (bulk RNA-seq) [M2_384Bulk_Plate1_S290]

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M18_384Bulk_Plate2_S306]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [M19_384Bulk_Plate1_S307]

value: WBC

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M17_384Bulk_Plate2_S305]

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M18_384Bulk_Plate1_S306]

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [M16_384Bulk_Plate1_S304]

value: Pancreas


title: Tabula Muris Senis (bulk RNA-seq) [M15_384Bulk_Plate1_S303]

value: Lung

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M14_384Bulk_Plate1_S302]


title: Tabula Muris Senis (bulk RNA-seq) [M14_384Bulk_Plate2_S302]

value: SCAT

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M13_384Bulk_Plate1_S301]

value: Skin


title: Tabula Muris Senis (bulk RNA-seq) [M14_384Bulk_Plate3_S302]

value: missing


title: Tabula Muris Senis (bulk RNA-seq) [M16_384Bulk_Plate2_S304]


title: Tabula Muris Senis (bulk RNA-seq) [M13_384Bulk_Plate3_S301]

value: Small Intestine

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M13_384Bulk_Plate2_S301]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M11_384Bulk_Plate2_S299]

value: BAT


title: Tabula Muris Senis (bulk RNA-seq) [M12_384Bulk_Plate3_S300]

value: GAT

value: 9 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [M11_384Bulk_Plate3_S299]

value: Spleen

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M11_384Bulk_Plate1_S299]


title: Tabula Muris Senis (bulk RNA-seq) [M10_384Bulk_Plate3_S298]

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [M15_384Bulk_Plate2_S303]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M10_384Bulk_Plate2_S298]

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M1_384Bulk_Plate2_S289]

value: Limb Muscle

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M19_384Bulk_Plate2_S307]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [M1_384Bulk_Plate3_S289]


title: Tabula Muris Senis (bulk RNA-seq) [L9_384Bulk_Plate2_S273]

value: Bone

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L9_384Bulk_Plate3_S273]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L9_384Bulk_Plate1_S273]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [M17_384Bulk_Plate1_S305]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L8_384Bulk_Plate3_S272]

value: Skin


title: Tabula Muris Senis (bulk RNA-seq) [M10_384Bulk_Plate1_S298]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [M1_384Bulk_Plate1_S289]


title: Tabula Muris Senis (bulk RNA-seq) [L8_384Bulk_Plate1_S272]

value: Lung

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [M12_384Bulk_Plate1_S300]


title: Tabula Muris Senis (bulk RNA-seq) [M12_384Bulk_Plate2_S300]


title: Tabula Muris Senis (bulk RNA-seq) [L7_384Bulk_Plate3_S271]

value: Marrow


title: Tabula Muris Senis (bulk RNA-seq) [L6_384Bulk_Plate3_S270]


title: Tabula Muris Senis (bulk RNA-seq) [L7_384Bulk_Plate2_S271]

value: Spleen

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [L7_384Bulk_Plate1_S271]

value: 1 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [L6_384Bulk_Plate2_S270]

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L6_384Bulk_Plate1_S270]


title: Tabula Muris Senis (bulk RNA-seq) [L5_384Bulk_Plate3_S269]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L5_384Bulk_Plate1_S269]

value: SCAT


title: Tabula Muris Senis (bulk RNA-seq) [L4_384Bulk_Plate1_S268]

value: Brain

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L4_384Bulk_Plate3_S268]


title: Tabula Muris Senis (bulk RNA-seq) [L3_384Bulk_Plate3_S267]


title: Tabula Muris Senis (bulk RNA-seq) [L3_384Bulk_Plate2_S267]

value: BAT

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L4_384Bulk_Plate2_S268]

value: GAT


title: Tabula Muris Senis (bulk RNA-seq) [L5_384Bulk_Plate2_S269]

value: Small Intestine

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L3_384Bulk_Plate1_S267]

value: Pancreas

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L23_384Bulk_Plate1_S287]

value: WBC

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L8_384Bulk_Plate2_S272]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [L23_384Bulk_Plate2_S287]

value: Heart

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [L22_384Bulk_Plate2_S286]

value: 24 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [L22_384Bulk_Plate1_S286]


title: Tabula Muris Senis (bulk RNA-seq) [L21_384Bulk_Plate2_S285]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [L2_384Bulk_Plate2_S266]

value: Marrow

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L20_384Bulk_Plate2_S284]


title: Tabula Muris Senis (bulk RNA-seq) [L2_384Bulk_Plate1_S266]

value: Bone

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L19_384Bulk_Plate2_S283]

value: Brain


title: Tabula Muris Senis (bulk RNA-seq) [L20_384Bulk_Plate1_S284]

value: GAT

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L18_384Bulk_Plate2_S282]


title: Tabula Muris Senis (bulk RNA-seq) [L18_384Bulk_Plate1_S282]

value: SCAT

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L19_384Bulk_Plate1_S283]


title: Tabula Muris Senis (bulk RNA-seq) [L17_384Bulk_Plate1_S281]

value: MAT


title: Tabula Muris Senis (bulk RNA-seq) [L16_384Bulk_Plate2_S280]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L17_384Bulk_Plate2_S281]

value: Pancreas

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L16_384Bulk_Plate1_S280]

value: BAT

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L15_384Bulk_Plate1_S279]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [L14_384Bulk_Plate2_S278]

value: Lung

value: 18 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [L14_384Bulk_Plate1_S278]

value: Kidney

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L14_384Bulk_Plate3_S278]

value: missing


title: Tabula Muris Senis (bulk RNA-seq) [L12_384Bulk_Plate3_S276]

value: Brain

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L13_384Bulk_Plate1_S277]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L13_384Bulk_Plate3_S277]

value: Bone


title: Tabula Muris Senis (bulk RNA-seq) [L12_384Bulk_Plate1_S276]

value: MAT


title: Tabula Muris Senis (bulk RNA-seq) [L15_384Bulk_Plate2_S279]

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L11_384Bulk_Plate3_S275]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L11_384Bulk_Plate1_S275]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [L11_384Bulk_Plate2_S275]


title: Tabula Muris Senis (bulk RNA-seq) [L10_384Bulk_Plate2_S274]

value: Marrow


title: Tabula Muris Senis (bulk RNA-seq) [L21_384Bulk_Plate1_S285]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L12_384Bulk_Plate2_S276]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [L10_384Bulk_Plate1_S274]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [L1_384Bulk_Plate2_S265]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [L1_384Bulk_Plate3_S265]

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [L2_384Bulk_Plate3_S266]


title: Tabula Muris Senis (bulk RNA-seq) [L1_384Bulk_Plate1_S265]


title: Tabula Muris Senis (bulk RNA-seq) [K9_384Bulk_Plate3_S249]


title: Tabula Muris Senis (bulk RNA-seq) [K9_384Bulk_Plate2_S249]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [L10_384Bulk_Plate3_S274]


title: Tabula Muris Senis (bulk RNA-seq) [K9_384Bulk_Plate1_S249]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [K8_384Bulk_Plate2_S248]

value: Spleen


title: Tabula Muris Senis (bulk RNA-seq) [K8_384Bulk_Plate3_S248]

value: Pancreas

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K8_384Bulk_Plate1_S248]

value: WBC

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K7_384Bulk_Plate2_S247]

value: GAT

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K7_384Bulk_Plate3_S247]

value: Brain

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K7_384Bulk_Plate1_S247]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K6_384Bulk_Plate2_S246]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K6_384Bulk_Plate3_S246]

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K6_384Bulk_Plate1_S246]


title: Tabula Muris Senis (bulk RNA-seq) [L13_384Bulk_Plate2_S277]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [K5_384Bulk_Plate3_S245]


title: Tabula Muris Senis (bulk RNA-seq) [K5_384Bulk_Plate2_S245]


title: Tabula Muris Senis (bulk RNA-seq) [K4_384Bulk_Plate3_S244]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [K4_384Bulk_Plate1_S244]

value: Bone

value: 3 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [K3_384Bulk_Plate3_S243]


title: Tabula Muris Senis (bulk RNA-seq) [K5_384Bulk_Plate1_S245]

value: BAT


title: Tabula Muris Senis (bulk RNA-seq) [K3_384Bulk_Plate2_S243]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K3_384Bulk_Plate1_S243]


title: Tabula Muris Senis (bulk RNA-seq) [K23_384Bulk_Plate2_S263]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K4_384Bulk_Plate2_S244]


title: Tabula Muris Senis (bulk RNA-seq) [K22_384Bulk_Plate2_S262]

value: Skin


title: Tabula Muris Senis (bulk RNA-seq) [K21_384Bulk_Plate1_S261]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [K20_384Bulk_Plate2_S260]


title: Tabula Muris Senis (bulk RNA-seq) [K22_384Bulk_Plate1_S262]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [K20_384Bulk_Plate1_S260]


title: Tabula Muris Senis (bulk RNA-seq) [K21_384Bulk_Plate2_S261]

value: MAT

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K19_384Bulk_Plate2_S259]

value: Liver

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K2_384Bulk_Plate3_S242]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K19_384Bulk_Plate1_S259]

value: Pancreas

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K18_384Bulk_Plate2_S258]

value: SCAT

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [K17_384Bulk_Plate2_S257]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [K2_384Bulk_Plate2_S242]

value: WBC

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K16_384Bulk_Plate2_S256]

value: Spleen

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [K18_384Bulk_Plate1_S258]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [K16_384Bulk_Plate1_S256]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K14_384Bulk_Plate1_S254]


title: Tabula Muris Senis (bulk RNA-seq) [K23_384Bulk_Plate1_S263]

value: Skin


title: Tabula Muris Senis (bulk RNA-seq) [K14_384Bulk_Plate3_S254]

value: missing


title: Tabula Muris Senis (bulk RNA-seq) [K15_384Bulk_Plate1_S255]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [K13_384Bulk_Plate3_S253]

value: Brain


title: Tabula Muris Senis (bulk RNA-seq) [K12_384Bulk_Plate3_S252]

value: Bone

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K12_384Bulk_Plate2_S252]


title: Tabula Muris Senis (bulk RNA-seq) [K13_384Bulk_Plate1_S253]

value: Liver

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K12_384Bulk_Plate1_S252]

value: GAT

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K11_384Bulk_Plate3_S251]

value: 21 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [K11_384Bulk_Plate1_S251]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K10_384Bulk_Plate3_S250]

value: Marrow


title: Tabula Muris Senis (bulk RNA-seq) [K2_384Bulk_Plate1_S242]

value: Limb Muscle

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K1_384Bulk_Plate3_S241]

value: BAT

value: 6 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [K13_384Bulk_Plate2_S253]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [K11_384Bulk_Plate2_S251]

value: Skin

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K1_384Bulk_Plate2_S241]


title: Tabula Muris Senis (bulk RNA-seq) [J9_384Bulk_Plate3_S225]

value: Brain


title: Tabula Muris Senis (bulk RNA-seq) [J9_384Bulk_Plate2_S225]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [K17_384Bulk_Plate1_S257]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [K15_384Bulk_Plate2_S255]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J8_384Bulk_Plate2_S224]

value: GAT

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J9_384Bulk_Plate1_S225]

value: Pancreas

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [J8_384Bulk_Plate3_S224]


title: Tabula Muris Senis (bulk RNA-seq) [K14_384Bulk_Plate2_S254]

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J7_384Bulk_Plate3_S223]

value: Marrow


title: Tabula Muris Senis (bulk RNA-seq) [J7_384Bulk_Plate2_S223]


title: Tabula Muris Senis (bulk RNA-seq) [J6_384Bulk_Plate2_S222]


title: Tabula Muris Senis (bulk RNA-seq) [J6_384Bulk_Plate1_S222]


title: Tabula Muris Senis (bulk RNA-seq) [J5_384Bulk_Plate3_S221]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [J7_384Bulk_Plate1_S223]

value: Bone

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K10_384Bulk_Plate2_S250]

value: Spleen

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J4_384Bulk_Plate3_S220]

value: MAT

value: 1 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [J6_384Bulk_Plate3_S222]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J4_384Bulk_Plate2_S220]

value: Limb Muscle


title: Tabula Muris Senis (bulk RNA-seq) [J3_384Bulk_Plate2_S219]

value: Kidney

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J3_384Bulk_Plate3_S219]


title: Tabula Muris Senis (bulk RNA-seq) [J4_384Bulk_Plate1_S220]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J5_384Bulk_Plate2_S221]

value: Brain


title: Tabula Muris Senis (bulk RNA-seq) [J3_384Bulk_Plate1_S219]

value: SCAT


title: Tabula Muris Senis (bulk RNA-seq) [J23_384Bulk_Plate2_S239]

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J22_384Bulk_Plate2_S238]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [K1_384Bulk_Plate1_S241]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [J2_384Bulk_Plate1_S218]


title: Tabula Muris Senis (bulk RNA-seq) [J2_384Bulk_Plate3_S218]

value: Small Intestine

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J22_384Bulk_Plate1_S238]

value: WBC

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J19_384Bulk_Plate2_S235]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J21_384Bulk_Plate2_S237]

value: Bone

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [J8_384Bulk_Plate1_S224]

value: Heart

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [J20_384Bulk_Plate1_S236]

value: Kidney

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J20_384Bulk_Plate2_S236]


title: Tabula Muris Senis (bulk RNA-seq) [J19_384Bulk_Plate1_S235]

value: Spleen

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J21_384Bulk_Plate1_S237]

value: Limb Muscle


title: Tabula Muris Senis (bulk RNA-seq) [J5_384Bulk_Plate1_S221]

value: Pancreas


title: Tabula Muris Senis (bulk RNA-seq) [J17_384Bulk_Plate2_S233]

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J23_384Bulk_Plate1_S239]

value: MAT

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J18_384Bulk_Plate2_S234]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J18_384Bulk_Plate1_S234]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [J13_384Bulk_Plate3_S229]


title: Tabula Muris Senis (bulk RNA-seq) [J17_384Bulk_Plate1_S233]


title: Tabula Muris Senis (bulk RNA-seq) [J16_384Bulk_Plate2_S232]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J2_384Bulk_Plate2_S218]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [J13_384Bulk_Plate2_S229]


title: Tabula Muris Senis (bulk RNA-seq) [J14_384Bulk_Plate1_S230]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J14_384Bulk_Plate3_S230]

value: missing


title: Tabula Muris Senis (bulk RNA-seq) [J12_384Bulk_Plate2_S228]


title: Tabula Muris Senis (bulk RNA-seq) [J14_384Bulk_Plate2_S230]

value: SCAT

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J12_384Bulk_Plate1_S228]

value: Small Intestine

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [J15_384Bulk_Plate1_S231]

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [J12_384Bulk_Plate3_S228]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J13_384Bulk_Plate1_S229]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J15_384Bulk_Plate2_S231]

value: Limb Muscle

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J11_384Bulk_Plate3_S227]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [J11_384Bulk_Plate2_S227]

value: Brain


title: Tabula Muris Senis (bulk RNA-seq) [J10_384Bulk_Plate3_S226]

value: Bone

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J10_384Bulk_Plate2_S226]

value: GAT


title: Tabula Muris Senis (bulk RNA-seq) [J1_384Bulk_Plate3_S217]

value: Liver

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I9_384Bulk_Plate3_S201]

value: Lung

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J11_384Bulk_Plate1_S227]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J1_384Bulk_Plate1_S217]


title: Tabula Muris Senis (bulk RNA-seq) [J10_384Bulk_Plate1_S226]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I9_384Bulk_Plate2_S201]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [I8_384Bulk_Plate3_S200]

value: SCAT

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [J1_384Bulk_Plate2_S217]

value: 21 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [I8_384Bulk_Plate1_S200]


title: Tabula Muris Senis (bulk RNA-seq) [I9_384Bulk_Plate1_S201]


title: Tabula Muris Senis (bulk RNA-seq) [I7_384Bulk_Plate2_S199]

value: WBC

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I6_384Bulk_Plate3_S198]

value: BAT


title: Tabula Muris Senis (bulk RNA-seq) [I5_384Bulk_Plate3_S197]


title: Tabula Muris Senis (bulk RNA-seq) [I5_384Bulk_Plate2_S197]

value: Spleen


title: Tabula Muris Senis (bulk RNA-seq) [I6_384Bulk_Plate1_S198]


title: Tabula Muris Senis (bulk RNA-seq) [I5_384Bulk_Plate1_S197]

value: Bone

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I4_384Bulk_Plate3_S196]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [I4_384Bulk_Plate2_S196]

value: Limb Muscle


title: Tabula Muris Senis (bulk RNA-seq) [I3_384Bulk_Plate3_S195]


title: Tabula Muris Senis (bulk RNA-seq) [I4_384Bulk_Plate1_S196]

value: Pancreas

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I23_384Bulk_Plate2_S215]

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I8_384Bulk_Plate2_S200]

value: MAT


title: Tabula Muris Senis (bulk RNA-seq) [I23_384Bulk_Plate1_S215]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I22_384Bulk_Plate1_S214]


title: Tabula Muris Senis (bulk RNA-seq) [I22_384Bulk_Plate2_S214]


title: Tabula Muris Senis (bulk RNA-seq) [I21_384Bulk_Plate1_S213]

value: Marrow

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I20_384Bulk_Plate1_S212]

value: Brain

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [I20_384Bulk_Plate2_S212]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [I2_384Bulk_Plate3_S194]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I2_384Bulk_Plate2_S194]

value: GAT


title: Tabula Muris Senis (bulk RNA-seq) [I7_384Bulk_Plate3_S199]


title: Tabula Muris Senis (bulk RNA-seq) [I21_384Bulk_Plate2_S213]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [I7_384Bulk_Plate1_S199]


title: Tabula Muris Senis (bulk RNA-seq) [I6_384Bulk_Plate2_S198]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I18_384Bulk_Plate2_S210]

value: Heart

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I2_384Bulk_Plate1_S194]

value: SCAT


title: Tabula Muris Senis (bulk RNA-seq) [I19_384Bulk_Plate1_S211]

value: Spleen


title: Tabula Muris Senis (bulk RNA-seq) [I19_384Bulk_Plate2_S211]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [I18_384Bulk_Plate1_S210]


title: Tabula Muris Senis (bulk RNA-seq) [I17_384Bulk_Plate2_S209]


title: Tabula Muris Senis (bulk RNA-seq) [I3_384Bulk_Plate2_S195]

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I3_384Bulk_Plate1_S195]


title: Tabula Muris Senis (bulk RNA-seq) [I15_384Bulk_Plate1_S207]


title: Tabula Muris Senis (bulk RNA-seq) [I16_384Bulk_Plate2_S208]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I15_384Bulk_Plate2_S207]


title: Tabula Muris Senis (bulk RNA-seq) [I17_384Bulk_Plate1_S209]


title: Tabula Muris Senis (bulk RNA-seq) [I14_384Bulk_Plate3_S206]

value: missing


title: Tabula Muris Senis (bulk RNA-seq) [I13_384Bulk_Plate1_S205]


title: Tabula Muris Senis (bulk RNA-seq) [I13_384Bulk_Plate3_S205]


title: Tabula Muris Senis (bulk RNA-seq) [I14_384Bulk_Plate2_S206]


title: Tabula Muris Senis (bulk RNA-seq) [I12_384Bulk_Plate3_S204]

value: Limb Muscle

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I11_384Bulk_Plate3_S203]

value: MAT

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I11_384Bulk_Plate1_S203]

value: 1 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [I11_384Bulk_Plate2_S203]

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [I12_384Bulk_Plate1_S204]

value: Lung


title: Tabula Muris Senis (bulk RNA-seq) [I10_384Bulk_Plate3_S202]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [I10_384Bulk_Plate1_S202]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [I13_384Bulk_Plate2_S205]


title: Tabula Muris Senis (bulk RNA-seq) [I1_384Bulk_Plate2_S193]

value: BAT

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I1_384Bulk_Plate1_S193]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [I10_384Bulk_Plate2_S202]

value: Marrow

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H9_384Bulk_Plate3_S177]

value: Skin

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [I16_384Bulk_Plate1_S208]


title: Tabula Muris Senis (bulk RNA-seq) [I1_384Bulk_Plate3_S193]


title: Tabula Muris Senis (bulk RNA-seq) [H9_384Bulk_Plate1_S177]


title: Tabula Muris Senis (bulk RNA-seq) [H8_384Bulk_Plate3_S176]

value: Pancreas

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H8_384Bulk_Plate1_S176]

value: GAT


title: Tabula Muris Senis (bulk RNA-seq) [H7_384Bulk_Plate2_S175]


title: Tabula Muris Senis (bulk RNA-seq) [H7_384Bulk_Plate3_S175]

value: Limb Muscle

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H6_384Bulk_Plate3_S174]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [H8_384Bulk_Plate2_S176]

value: Brain

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [I14_384Bulk_Plate1_S206]

value: SCAT


title: Tabula Muris Senis (bulk RNA-seq) [I12_384Bulk_Plate2_S204]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H7_384Bulk_Plate1_S175]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [H6_384Bulk_Plate2_S174]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H6_384Bulk_Plate1_S174]

value: Liver

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H5_384Bulk_Plate3_S173]

value: BAT

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H3_384Bulk_Plate3_S171]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H5_384Bulk_Plate1_S173]

value: Pancreas

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H4_384Bulk_Plate2_S172]

value: Marrow

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H9_384Bulk_Plate2_S177]

value: Kidney

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H3_384Bulk_Plate2_S171]

value: Heart

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H23_384Bulk_Plate2_S191]

value: Skin

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [H23_384Bulk_Plate1_S191]


title: Tabula Muris Senis (bulk RNA-seq) [H22_384Bulk_Plate1_S190]

value: Bone

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [H22_384Bulk_Plate2_S190]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H3_384Bulk_Plate1_S171]

value: Lung

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H21_384Bulk_Plate2_S189]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [H5_384Bulk_Plate2_S173]

value: MAT

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H4_384Bulk_Plate1_S172]

value: Brain

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H21_384Bulk_Plate1_S189]

value: Marrow


title: Tabula Muris Senis (bulk RNA-seq) [H20_384Bulk_Plate2_S188]


title: Tabula Muris Senis (bulk RNA-seq) [H2_384Bulk_Plate3_S170]

value: Pancreas

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [J16_384Bulk_Plate1_S232]


title: Tabula Muris Senis (bulk RNA-seq) [H2_384Bulk_Plate2_S170]

value: WBC


title: Tabula Muris Senis (bulk RNA-seq) [H18_384Bulk_Plate1_S186]


title: Tabula Muris Senis (bulk RNA-seq) [H2_384Bulk_Plate1_S170]

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H17_384Bulk_Plate1_S185]

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H20_384Bulk_Plate1_S188]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [H16_384Bulk_Plate2_S184]

value: Skin


title: Tabula Muris Senis (bulk RNA-seq) [H4_384Bulk_Plate3_S172]

value: 1 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [H17_384Bulk_Plate2_S185]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H18_384Bulk_Plate2_S186]

value: Limb Muscle

value: 18 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [H15_384Bulk_Plate2_S183]

value: Spleen

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H15_384Bulk_Plate1_S183]

value: MAT


title: Tabula Muris Senis (bulk RNA-seq) [H14_384Bulk_Plate1_S182]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H13_384Bulk_Plate3_S181]

value: Bone


title: Tabula Muris Senis (bulk RNA-seq) [H16_384Bulk_Plate1_S184]

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H13_384Bulk_Plate2_S181]

value: SCAT

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H13_384Bulk_Plate1_S181]


title: CEBPb_Male_TCPOBOP_27hr_LiverD3_G154_M15

city: Boston

first: David

middle: J.

last: Waxman

state: MA

address: 5 Cummington Mall

department: Department of Biology and Bioinformatics Program

institute: Boston University

description: G154-M15-Index15_ATGTCA-_ACB6A7ANXX_L007_001

data_processing:
READ MAPPING: Sequence reads were mapped to the mouse genome (mm9) using Bowtie 2 (version 2.3.2)  (Langmead 2012 Nat Methods)
PEAK CALLING: Peaks were called using Macs2 (Zhang et al 2008, Genome Biology) with default parameters without filtering for PCR duplicates. Peaks were filtered to remove blacklisted regions (www.sites.google.com/site/anshulkundaje/projects/blacklists) and also regions called as peaks that contain only PCR duplicated reads.
Genome_build: mm9
Supplementary_files_format_and_content: BED files containing the peaks (transcription factor binding sites) identified using MACS2. Each file contains the peak coordinates (chr, start, end) and the peak ID.

extract_protocol:
Chromatin was extracted from frozen liver tissue from each of the individual livers per group. Crosslinking was achieved by adding formaldehyde to a final concentration of 1% for 5 min at room temperature. ChIP was performed using the following ChIP-validated antibodies: RXRa (Santa-Cruz Biotechnology #SC-553), CEBPa (Santa-Cruz Biotechnology #SC-61), CEBPb (Santa-Cruz Biotechnology #SC-150).
Sequencing libraries were prepared using NEBNext Ultra II DNA Library Prep kit for Illumina (NEB, catalog no. E7645) according to the manufacturer’s instructions. NEBNext Multiplex Oligos for Illumina (NEB, Set 1; catalog no. E7335, NEB, Set 2; catalog no. E7500) were used for multiplexing. Samples marked input control correspond to sequencing libraries from sonicated chromatin that was not subject to ChIP.

treatment_protocol: Male CD1 (ICR strain) mice were obtained from Charles River Labs (Wilmington, MA) at 7 or 8 weeks of age. Mice were injected with 3 mg/kg TCPOBOP or vehicle (1% DMSO in corn oil) between 8:00-8:45 AM on Day 1 and tissue was collected between 11:00-11:45 AM on Day 1 (3 h time point) or between 11:00-11:45 AM on Day 2 (27 h time point).

tag: strain

value: CD-1 (Charles River)

value: male

value: 8 weeks

tag: treatment

value: 3 mg/kg TCPOBOP_ 27 h

value: liver

tag: chip antibody


title: Tabula Muris Senis (bulk RNA-seq) [H12_384Bulk_Plate2_S180]

value: Pancreas

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H14_384Bulk_Plate2_S182]

value: Heart

value: 24 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [H12_384Bulk_Plate3_S180]

value: Female


title: CEBPb_Male_TCPOBOP_27hr_LiverD4_G154_M16

description: G154-M16-Index16_CCGTCC-_ACB6A7ANXX_L007_001

value: CEBPb (Santa-Cruz Biotechnology #SC-150)


title: Tabula Muris Senis (bulk RNA-seq) [H12_384Bulk_Plate1_S180]

value: MAT


title: CEBPb_Male_Vehicle_27hr_LiverC3_G154_M11

description: G154-M11-Index11_GGCTAC-_ACB6A7ANXX_L007_001

value: Vehicle (1% DMSO in corn oil)_ 27 h


title: CEBPb_Male_TCPOBOP_27hr_LiverD1_G154_M13

description: G154-M13-Index13_AGTCAA-_ACB6A7ANXX_L007_001


title: CEBPb_Male_TCPOBOP_27hr_LiverD2_G154_M14

description: G154-M14-Index14_AGTTCC-_ACB6A7ANXX_L007_001


title: Tabula Muris Senis (bulk RNA-seq) [H19_384Bulk_Plate1_S187]

value: Limb Muscle


title: CEBPb_Male_Vehicle_27hr_LiverC4_G154_M12

description: G154-M12-Index12_CTTGTA-_ACB6A7ANXX_L007_001


title: Tabula Muris Senis (bulk RNA-seq) [H11_384Bulk_Plate3_S179]

value: SCAT

value: 9 months postnatal


title: CEBPb_Male_Vehicle_27hr_LiverC2_G154_M10

description: G154-M10-Index10_TAGCTT-_ACB6A7ANXX_L007_001

value: CD-1 (Charles River)


title: Tabula Muris Senis (bulk RNA-seq) [H11_384Bulk_Plate2_S179]

value: 6 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H14_384Bulk_Plate3_S182]

value: missing


title: Tabula Muris Senis (bulk RNA-seq) [H11_384Bulk_Plate1_S179]

value: 15 months postnatal


title: CEBPa_Male_TCPOBOP_27hr_LiverD4_G154_M8

description: G154-M8-Index8_ACTTGA-_ACB6A7ANXX_L007_001

value: male

value: 8 weeks

value: 3 mg/kg TCPOBOP_ 27 h

value: liver

value: CEBPa (Santa-Cruz Biotechnology #SC-61)


title: CEBPb_Male_Vehicle_27hr_LiverC1_G154_M9

description: G154-M9-Index9_GATCAG-_ACB6A7ANXX_L007_001


title: Tabula Muris Senis (bulk RNA-seq) [H10_384Bulk_Plate3_S178]

value: 1 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [H1_384Bulk_Plate3_S169]

value: Liver

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H10_384Bulk_Plate2_S178]

value: MAT

value: 18 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [H1_384Bulk_Plate2_S169]

value: 3 months postnatal


title: CEBPa_Male_TCPOBOP_27hr_LiverD3_G154_M7

description: G154-M7-Index7_CAGATC-_ACB6A7ANXX_L007_001

value: CD-1 (Charles River)


title: Tabula Muris Senis (bulk RNA-seq) [H19_384Bulk_Plate2_S187]

value: Marrow

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H10_384Bulk_Plate1_S178]

value: 27 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [H1_384Bulk_Plate1_S169]

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [G9_384Bulk_Plate3_S153]


title: CEBPa_Male_TCPOBOP_27hr_LiverD2_G154_M6

description: G154-M6-Index6_GCCAAT-_ACB6A7ANXX_L007_001

value: male

value: 8 weeks


title: CEBPa_Male_Vehicle_27hr_LiverC4_G154_M4

description: G154-M4-Index4_TGACCA-_ACB6A7ANXX_L007_001

value: Vehicle (1% DMSO in corn oil)_ 27 h

value: liver


title: CEBPa_Male_Vehicle_27hr_LiverC1_G154_M1

description: G154-M1-Index1_ATCACG-_ACB6A7ANXX_L007_001

value: CEBPa (Santa-Cruz Biotechnology #SC-61)


title: CEBPa_Male_TCPOBOP_27hr_LiverD1_G154_M5

description: G154-M5-Index5_ACAGTG-_ACB6A7ANXX_L007_001

value: 3 mg/kg TCPOBOP_ 27 h


title: Tabula Muris Senis (bulk RNA-seq) [G8_384Bulk_Plate3_S152]

value: Heart

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [G8_384Bulk_Plate1_S152]

value: Liver


title: Tabula Muris Senis (bulk RNA-seq) [G8_384Bulk_Plate2_S152]


title: Tabula Muris Senis (bulk RNA-seq) [G7_384Bulk_Plate3_S151]

value: MAT


title: RXR_Male_Vehicle_27hr_LiverC4_G155_M4

description: G155-M4-Index21_GTTTCG-_ACB6A7ANXX_L008_001

value: RXRa (Santa-Cruz Biotechnology #SC-553)


title: RXR_Male_TCPOBOP_27hr_LiverD3_G155_M7

description: G155-M7-Index25_ACTGAT-_ACB6A7ANXX_L008_001


title: RXR_Male_TCPOBOP_27hr_LiverD1_G155_M5

description: G155-M5-Index22_CGTACG-_ACB6A7ANXX_L008_001


title: RXR_Male_TCPOBOP_27hr_LiverD2_G155_M6

description: G155-M6-Index23_GAGTGG-_ACB6A7ANXX_L008_001


title: RXR_Male_Vehicle_27hr_LiverC3_G155_M3

description: G155-M3-Index20_GTGGCC-_ACB6A7ANXX_L008_001


title: RXR_Male_TCPOBOP_27hr_LiverD4_G155_M8

description: G155-M8-Index27_ATTCCT-_ACB6A7ANXX_L008_001


title: Tabula Muris Senis (bulk RNA-seq) [G7_384Bulk_Plate1_S151]

description: processed data file: 190214_A00111_0269_AHH3J3DSXX__190214_A00111_0270_BHHMFWDSXX.csv

value: 1 months postnatal


title: CEBPa_Male_Vehicle_27hr_LiverC3_G154_M3

description: G154-M3-Index3_TTAGGC-_ACB6A7ANXX_L007_001

value: CD-1 (Charles River)


title: Tabula Muris Senis (bulk RNA-seq) [G6_384Bulk_Plate2_S150]

value: SCAT

value: 3 months postnatal


title: CEBPa_Male_Vehicle_27hr_LiverC2_G154_M2

description: G154-M2-Index2_CGATGT-_ACB6A7ANXX_L007_001


title: Tabula Muris Senis (bulk RNA-seq) [G9_384Bulk_Plate2_S153]

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [G5_384Bulk_Plate3_S149]

value: Kidney

value: 27 months postnatal


title: RXR_Male_Vehicle_27hr_LiverC2_G155_M2

description: G155-M2-Index19_GTGAAA-_ACB6A7ANXX_L008_001

value: male

value: 8 weeks


title: RXR_Male_Vehicle_27hr_LiverC1_G155_M1

description: G155-M1-Index18_GTCCGC-_ACB6A7ANXX_L008_001

value: Vehicle (1% DMSO in corn oil)_ 27 h

value: liver


title: Input_04_Male_TCPOBOP_3hr_LiverD46_G124_G125_M27

description: G124-G125-M20M38-NEBNext14_AGTTCC-_AC8KUAANXX_L008_001

value: 7 weeks

value: 3 mg/kg TCPOBOP_ 3 h


title: Tabula Muris Senis (bulk RNA-seq) [G6_384Bulk_Plate3_S150]

value: BAT

value: Male


title: Input_03_Male_Vehicle_3hr_LiverA46_G124_G125_M26

description: G124-G125-M20M38-NEBNext13_AGTCAA-_AC8KUAANXX_L008_001

value: Vehicle (1% DMSO in corn oil)_ 3 h


title: Tabula Muris Senis (bulk RNA-seq) [G5_384Bulk_Plate1_S149]

value: Pancreas

value: 12 months postnatal


title: Input_01_Male_Vehicle_3hr_LiverA38_G124_G125_M18

description: G124-G125-M1M19-NEBNext19_GTGAAA-_AC8KUAANXX_L007_001

value: CD-1 (Charles River)


title: Tabula Muris Senis (bulk RNA-seq) [G4_384Bulk_Plate3_S148]

value: Liver

value: 9 months postnatal


title: Input_02_Male_TCPOBOP_3hr_LiverD40_G124_G125_M19

description: G124-G125-M1M19-NEBNext20_GTGGCC-_AC8KUAANXX_L007_001


title: CEBPb_Male_TCPOBOP_3hr_LiverD46_G124_G125_M15

description: G124-G125-M1M19-NEBNext15_ATGTCA-_AC8KUAANXX_L007_001

value: CEBPb (Santa-Cruz Biotechnology #SC-150)


title: Tabula Muris Senis (bulk RNA-seq) [G9_384Bulk_Plate1_S153]

value: Marrow

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [G4_384Bulk_Plate2_S148]

value: Limb Muscle

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [G4_384Bulk_Plate1_S148]

value: SCAT

value: 6 months postnatal


title: CEBPb_Male_TCPOBOP_3hr_LiverD44_G124_G125_M13

description: G124-G125-M1M19-NEBNext13_AGTCAA-_AC8KUAANXX_L007_001

value: male

value: 7 weeks

value: liver


title: Tabula Muris Senis (bulk RNA-seq) [G3_384Bulk_Plate3_S147]

value: Heart


title: Tabula Muris Senis (bulk RNA-seq) [G7_384Bulk_Plate2_S151]

value: WBC

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [G23_384Bulk_Plate1_S167]

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [G3_384Bulk_Plate1_S147]

value: 27 months postnatal


title: CEBPb_Male_TCPOBOP_3hr_LiverD45_G124_G125_M14

description: G124-G125-M1M19-NEBNext14_AGTTCC-_AC8KUAANXX_L007_001

value: CD-1 (Charles River)

value: 3 mg/kg TCPOBOP_ 3 h


title: CEBPb_Male_Vehicle_3hr_LiverA46_G124_G125_M12

description: G124-G125-M1M19-NEBNext12_CTTGTA-_AC8KUAANXX_L007_001

value: Vehicle (1% DMSO in corn oil)_ 3 h

value: CEBPb (Santa-Cruz Biotechnology #SC-150)


title: Tabula Muris Senis (bulk RNA-seq) [G22_384Bulk_Plate1_S166]

value: Spleen

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [G21_384Bulk_Plate1_S165]

value: Limb Muscle

value: 1 months postnatal


title: CEBPa_Male_TCPOBOP_3hr_LiverD45_G124_G125_M8

description: G124-G125-M1M19-NEBNext8_ACTTGA-_AC8KUAANXX_L007_001

value: CEBPa (Santa-Cruz Biotechnology #SC-61)


title: CEBPa_Male_TCPOBOP_3hr_LiverD46_G124_G125_M9

description: G124-G125-M1M19-NEBNext9_GATCAG-_AC8KUAANXX_L007_001

value: male


title: Tabula Muris Senis (bulk RNA-seq) [G2_384Bulk_Plate3_S146]


title: Tabula Muris Senis (bulk RNA-seq) [G20_384Bulk_Plate1_S164]

value: 6 months postnatal


title: CEBPa_Male_TCPOBOP_3hr_LiverD44_G124_G125_M7

description: G124-G125-M1M19-NEBNext7_CAGATC-_AC8KUAANXX_L007_001

value: 7 weeks

value: liver


title: CEBPa_Male_Vehicle_3hr_LiverA45_G124_G125_M5

description: G124-G125-M1M19-NEBNext5_ACAGTG-_AC8KUAANXX_L007_001


title: Tabula Muris Senis (bulk RNA-seq) [G2_384Bulk_Plate2_S146]

description: processed data file: 190214_A00111_0269_AHH3J3DSXX__190214_A00111_0270_BHHMFWDSXX.csv

value: SCAT

value: 21 months postnatal


title: CEBPa_Male_Vehicle_3hr_LiverA46_G124_G125_M6

description: G124-G125-M1M19-NEBNext6_GCCAAT-_AC8KUAANXX_L007_001


title: Tabula Muris Senis (bulk RNA-seq) [G6_384Bulk_Plate1_S150]

value: Heart

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [G19_384Bulk_Plate1_S163]

value: 27 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [G2_384Bulk_Plate1_S146]

value: Skin


title: RXR_Male_TCPOBOP_3hr_LiverB4_G155_M14

description: G155-M14-Index6_GCCAAT-_ACB6A7ANXX_L008_001

value: CD-1 (Charles River)

value: 8 weeks

value: 3 mg/kg TCPOBOP_ 3 h

value: RXRa (Santa-Cruz Biotechnology #SC-553)


title: RXR_Male_TCPOBOP_3hr_LiverB1_G155_M12

description: G155-M12-Index4_TGACCA-_ACB6A7ANXX_L008_001


title: RXR_Male_TCPOBOP_3hr_LiverB3_G155_M13

description: G155-M13-Index5_ACAGTG-_ACB6A7ANXX_L008_001


title: Tabula Muris Senis (bulk RNA-seq) [G19_384Bulk_Plate2_S163]

value: GAT


title: RXR_Male_Vehicle_3hr_LiverA4_G155_M11

description: G155-M11-Index3_TTAGGC-_ACB6A7ANXX_L008_001

value: Vehicle (1% DMSO in corn oil)_ 3 h


title: Tabula Muris Senis (bulk RNA-seq) [G18_384Bulk_Plate2_S162]

value: Marrow

value: 9 months postnatal


title: CEBPa_Male_Vehicle_3hr_LiverA44_G124_G125_M4

description: G124-G125-M1M19-NEBNext4_TGACCA-_AC8KUAANXX_L007_001

value: male

value: 7 weeks

value: CEBPa (Santa-Cruz Biotechnology #SC-61)


title: CEBPb_Male_Vehicle_3hr_LiverA45_G124_G125_M11

description: G124-G125-M1M19-NEBNext11_GGCTAC-_AC8KUAANXX_L007_001

value: liver

value: CEBPb (Santa-Cruz Biotechnology #SC-150)


title: Tabula Muris Senis (bulk RNA-seq) [G18_384Bulk_Plate1_S162]

value: WBC

value: 3 months postnatal


title: CEBPb_Male_Vehicle_3hr_LiverA44_G124_G125_M10

description: G124-G125-M1M19-NEBNext10_TAGCTT-_AC8KUAANXX_L007_001


title: RXR_Male_Vehicle_3hr_LiverA3_G155_M10

description: G155-M10-Index2_CGATGT-_ACB6A7ANXX_L008_001


title: Tabula Muris Senis (bulk RNA-seq) [G17_384Bulk_Plate1_S161]

value: 1 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [G16_384Bulk_Plate2_S160]

value: Heart

value: 12 months postnatal


title: RXR_Male_Vehicle_3hr_LiverA1_G155_M9

description: G155-M9-Index1_ATCACG-_ACB6A7ANXX_L008_001

value: CD-1 (Charles River)

value: 8 weeks


title: Tabula Muris Senis (bulk RNA-seq) [G16_384Bulk_Plate1_S160]

value: Brain


title: K27me3_Male_TCPOBOP_27hr_Replicate4_G150_M14

description: G150-M14-Index-14_AGTTCC-_BCALRAANXX_L002_001

data_processing:
READ MAPPING: Sequence reads were mapped to the mouse genome (mm9) using Bowtie 2 (version 2.3.2)  (Langmead 2012 Nat Methods)
PEAK CALLING: H3K27me3 regions were identified using SICER (version 1.1, window size 400 bp and gap size 2400 bp) (Xu, 2014 Methods Mol Biol).
Genome_build: mm9
Supplementary_files_format_and_content: BED files containing the regions identified using SICER. Each file contains the peak location and the peak ID.

extract_protocol:
Chromatin was extracted from frozen liver tissue from each of the individual livers per group. Crosslinking was achieved by adding formaldehyde to a final concentration of 1% for 5 min at room temperature. ChIP was performed using the following ChIP-validated antibodies: H3K27me3 (Abcam Cat # ab6002, 2 μg antibody per 10 μg of sonicated chromatin). This data set was generated from 200 bp fragments and then sequenced.
Sequencing libraries were prepared using NEBNext Ultra II DNA Library Prep kit for Illumina (NEB, catalog no. E7645) according to the manufacturer’s instructions. NEBNext Multiplex Oligos for Illumina (NEB, Set 1; catalog no. E7335, NEB, Set 2; catalog no. E7500) were used for multiplexing.

treatment_protocol: Male CD1 (ICR strain) mice were obtained from Charles River Labs (Wilmington, MA) at 7 weeks of age. Mice were injected with 3 mg/kg TCPOBOP or vehicle (1% DMSO in corn oil) between 8:00-8:45 AM on Day 1 and tissue was collected between 11:00-11:45 AM on Day 2 (27 h).

value: 3 mg/kg TCPOBOP_27 h

value: H3K27me3 (Abcam #ab6002)


title: K27me3_Male_TCPOBOP_27hr_Replicate3_G150_M13

description: G150-M13-Index-13_AGTCAA-_BCALRAANXX_L002_001


title: Tabula Muris Senis (bulk RNA-seq) [G15_384Bulk_Plate2_S159]

value: SCAT

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [G14_384Bulk_Plate2_S158]

value: Liver

value: 15 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [G14_384Bulk_Plate3_S158]

value: missing


title: K27me3_Male_TCPOBOP_27hr_Replicate2_G150_M12

description: G150-M12-Index-12_CTTGTA-_BCALRAANXX_L002_001

value: male

value: 7 weeks

value: liver


title: Tabula Muris Senis (bulk RNA-seq) [G15_384Bulk_Plate1_S159]

value: Spleen

value: 24 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [G14_384Bulk_Plate1_S158]

value: BAT

value: 1 months postnatal


title: K27me3_Male_Vehicle_27hr_Replicate2_G150_M9

description: G150-M9-Index-9_GATCAG-_BCALRAANXX_L002_001

value: CD-1 (Charles River)

value: Vehicle (1% DMSO in corn oil)_27 h


title: K27me3_Male_Vehicle_27hr_Replicate1_G150_M8

description: G150-M8-Index-8_ACTTGA-_BCALRAANXX_L002_001

value: H3K27me3 (Abcam #ab6002)


title: Tabula Muris Senis (bulk RNA-seq) [G13_384Bulk_Plate3_S157]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [G17_384Bulk_Plate2_S161]

value: Limb Muscle

value: 18 months postnatal


title: K27me3_Male_Vehicle_27hr_Replicate3_G150_M10

description: G150-M10-Index-10_TAGCTT-_BCALRAANXX_L002_001


title: K27me3_1100+digested_Male_TCPOBOP_3hr_Replicate1_G120_M13

extract_protocol:
Chromatin was extracted from frozen liver tissue from each of the individual livers per group. Crosslinking was achieved by adding formaldehyde to a final concentration of 1% for 5 min at room temperature. ChIP was performed using the following ChIP-validated antibodies: H3K27me3 (Abcam Cat # ab6002, 2 μg antibody per 10 μg of sonicated chromatin). Sequencing data was generated from DNA fragments between 600 - 1100 bp (samples G120_M6 through G120_M11) which were digested to 500 bp and then sequenced, or from longer DNA fragments (greater than 1100 bp) which were digested down to 200 bp and then sequenced. Sequencing libraries for samples G120_M12 and G120_M6 were both prepared from the same ChIP'd sample, and sequencing libraries for samples G120_M13 and G120_M9 were both prepared from the same ChIP'd sample.
Sequencing libraries were prepared using NEBNext Ultra II DNA Library Prep kit for Illumina (NEB, catalog no. E7645) according to the manufacturer’s instructions. NEBNext Multiplex Oligos for Illumina (NEB, Set 1; catalog no. E7335, NEB, Set 2; catalog no. E7500) were used for multiplexing.

treatment_protocol: Male CD1 (ICR strain) mice were obtained from Charles River Labs (Wilmington, MA) at 7 weeks of age. Mice were injected with 3 mg/kg TCPOBOP or vehicle (1% DMSO in corn oil) between 8:00-8:45 AM and liver tissue was collected between 11:00-11:45 AM, for a 3 hr time point.

value: 3 mg/kg TCPOBOP_ 3 h

value: H3K27me3 (Abcam Cat # ab6002)


title: K27me3_Male_TCPOBOP_27hr_Replicate1_G150_M11

description: G150-M11-Index-11_GGCTAC-_BCALRAANXX_L002_001

value: 3 mg/kg TCPOBOP_27 h


title: Tabula Muris Senis (bulk RNA-seq) [G13_384Bulk_Plate2_S157]

description: processed data file: 190214_A00111_0269_AHH3J3DSXX__190214_A00111_0270_BHHMFWDSXX.csv

value: Lung

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [G12_384Bulk_Plate2_S156]

value: MAT

value: 12 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [G13_384Bulk_Plate1_S157]

value: 9 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [G11_384Bulk_Plate3_S155]

value: Spleen


title: K27me3_600-1100bp_Male_Vehicle_3hr_Replicate3_G120_M8

value: CD-1 (Charles River)

value: male

value: 7 weeks

value: Vehicle (1% DMSO in corn oil) for 3 h

value: liver


title: K27me3_600-1100bp_Male_TCPOBOP_3hr_Replicate3_G120_M11

value: 3 mg/kg TCPOBOP for 3 h


title: K27me3_600-1100bp_Male_TCPOBOP_3hr_Replicate1_G120_M9


title: K27me3_1100+digested_Male_Vehicle_3hr_Replicate1_G120_M12

value: Vehicle (1% DMSO in corn oil)_ 3 h


title: K27me3_600-1100bp_Male_TCPOBOP_3hr_Replicate2_G120_M10

value: H3K27me3 (Abcam Cat # ab6002)


title: Tabula Muris Senis (bulk RNA-seq) [G11_384Bulk_Plate2_S155]

value: 3 months postnatal


title: K27me3_600-1100bp_Male_Vehicle_3hr_Replicate2_G120_M7


title: TCPOBOP-treated pool 3 (mice euthanized 3 hr after injection, at 11 AM)_G95_M6

description:
nuclear RNA pooled from 4 mouse livers
poly-A selected, unstranded library
lncRNA_rpkms_G81_G86_G95.xlsx

data_processing:
Sequence reads were mapped to mm9 using TopHat2 (Trapnell et al, Nat. Biotechnol, 2010)
Reads were counted along exons of lncRNA for each sample and were converted into RPKM values
Genome_build: mm9
Supplementary_files_format_and_content: A Microsoft Excel sheet containing expression levels (in RPKMs) for each lncRNA across datasets. LncRNA genomic locations were discovered as described in PMID: 28903501 and PMID: 26459762

molecule: nuclear RNA

source_name: liver tissue

growth_protocol: Male or female CD-1 mice (Charles River Laboratories), 8 weeks old, were treated with either TCPOBOP or PCN for 3  or 6 hours, and were euthanized. Livers were then harvested.

extract_protocol:
RNA was purified from frozen liver ('otal liver RNA') or from purified nuclei ('nuclear RNA'), as indicated. Nuclei were extracted from mouse liver tissue by homogenization and sucrose purification. RNA was extracted from total liver or from purified nuclei using Trizol following standard protocol.
Poly-A-enriched total RNA or nuclear RNA was prepared for Illumina sequencing using either strand-specific or non strand-specific sample preparation protocol

treatment_protocol: Injection of either PCN or TCPOBOP.

value: TCPOBOP

tag: gender

value: 8 weeks old


title: K27me3_600-1100bp_Male_Vehicle_3hr_Replicate1_G120_M6


title: Tabula Muris Senis (bulk RNA-seq) [G12_384Bulk_Plate1_S156]

value: Lung

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [G11_384Bulk_Plate1_S155]

value: Small Intestine

value: 6 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [G10_384Bulk_Plate3_S154]

value: Marrow

value: Male


title: TCPOBOP-treated pool 2 (mice euthanized 3 hr after injection, at 11 AM)_G95_M5

value: CD-1 (Charles River)

value: male


title: Tabula Muris Senis (bulk RNA-seq) [G12_384Bulk_Plate3_S156]

value: WBC

value: 1 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [G10_384Bulk_Plate2_S154]

value: GAT

value: 21 months postnatal


title: TCPOBOP-treated pool 1 (mice euthanized 3 hr after injection, at 11 AM)_G95_M4


title: Tabula Muris Senis (bulk RNA-seq) [G10_384Bulk_Plate1_S154]

value: Pancreas


title: Tabula Muris Senis (bulk RNA-seq) [G1_384Bulk_Plate1_S145]

value: Heart


title: SC35 [20180803_7415]

city: Cambridge

first: Richard

middle: A

last: Young

address: 9 Cambridge Center

institute: Whitehead Institute for Biomedical Research

data_processing:
Aligned using /usr/local/bin/bowtie with configuration -p 4 --best -k 1 -m 1 --sam -l 40
mm9
Supplementary_files_format_and_content: WIG files(s) represent counts of aligned reads within 50 bp bins with each read being extended 200 in the direction of alignment. Counts are in reads-per-million and floored at 0.1

growth_protocol: V6.5 murine embryonic stem cells (mESCs) were a gift from the Jaenisch lab. Cells were grown on 0.2% gelatinized (Sigma, G1890) tissue culture plates in 2i media, DMEM-F12 (Life Technologies, 11320082), 0.5X B27 supplement (Life Technologies, 17504044), 0.5X N2 supplement (Life Technologies, 17502048), an extra 0.5mM L- glutamine (Gibco, 25030-081), 0.1mM b-mercaptoethanol (Sigma, M7522), 1% Penicillin Streptomycin (Life Technologies, 15140163), 0.5X nonessential amino acids (Gibco, 11140-050), 1000 U/ml LIF (Chemico, ESG1107), 1μM PD0325901 (Stemgent, 04-0006-10), 3μM CHIR99021 (Stemgent, 04-0004-10). Cells were grown at 37°C with 5% CO2 in a humidified incubator.

extract_protocol:
Purified immunoprecipitated DNA isolated using Qiagen PCR purification kit. ChIP Libraries were prepared with the Swift Biosciences Accel-NGS® 2S Plus DNA Library Kit according to kit instructions. Final libraries were quantified by qPCR with the KAPA Library Quantification kit from Roche and sequenced in single-read mode for 40 bases.
Whole cell extracts were sonicated to solubilize the chromatin. The chromatin extracts containing DNA fragments with an average size of 200-400 bp were immunoprecipitated using different antibodies.

tag: cell line

value: murine embryonic stem cells (mESCs)

tag: chip antibody vendor.

value: Abcam

tag: chip antibody catalog

tag: chip antibody lot

value: Mouse monocloal


title: Tabula Muris Senis (bulk RNA-seq) [G1_384Bulk_Plate2_S145]

tag: tissue

value: SCAT

value: 18 months postnatal


title: RNA PolII Phospho CTD ser-2 [20180831_7546]

source_name: RNA PolII Phospho CTD ser-2

tag: cell type

value: RNA Pol II (Ser2 phospho CTD)

value: Millipore

value: Rat monoclonal


title: Tabula Muris Senis (bulk RNA-seq) [F9_384Bulk_Plate2_S129]

value: Lung

value: 15 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [G1_384Bulk_Plate3_S145]

value: Kidney

value: 12 months postnatal

value: Male


title: m6A-seq_P6D7A5

city: Oxford

first: Guifeng

last: Wei

address: South Parks Road

department: Department of Biochemistry

country: United Kingdom

institute: University of Oxford

data_processing:
For conventional m6A-seq data, first we removed the rRNA reads computationally by mapping the single-end reads to the mouse rRNA build with Bowtie2 (Langmead and Salzberg, 2012). The remaining unmapped reads were then aligned to mm10 genome by STAR (v2.4.2a) (Dobin et al., 2013) with “--single-end” mode. BigWig files were generated by Bedtools (Quinlan and Hall, 2010) and normalized to 10 million mapped reads (Generate_BigWig_from_RNA_seq_Bam_mm10.sh), then visualized in IGV or UCSC.
Genome_build: mm10
Supplementary_files_format_and_content: bigwig

growth_protocol: ES cells were grown in ES cell medium, which consisted of Dulbecco’s Modified Eagle Medium (DMEM, from Life Technologies) supplemented with 9% foetal calf serum (FCS, from Seralab), 2mM L-glutamine, 1x non-essential amino acids, 50 μM β-mercaptoethanol, 50g/mL penicillin/streptomycin (all from Invitrogen) and LIF- conditioned medium, made in house, at a concentration equivalent to 1000U/mL. Cells were grown at 37ºC in a humid atmosphere with 5% CO2. Cells were passaged using 0.05% trypsin-EDTA (Life Technologies) with 2% Chicken Serum (Life Technologies) and frozen in FCS + 10% DMSO.

extract_protocol: Total RNAs were isolated by Trizol, and were used for m6A-seq.

treatment_protocol: Xist expression driven by TetO promoter was induced by adding doxycycline (1.5μg/mL) to the culture medium for 24 hours.

value: male

value: mESC

value: Dox

tag: rip antibody

value: anti-m6A antibody (Synaptic Systems, 202 003)


title: Tabula Muris Senis (bulk RNA-seq) [F8_384Bulk_Plate3_S128]

value: Pancreas

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F9_384Bulk_Plate3_S129]

value: BAT

value: 21 months postnatal


title: plus_16wk_1

city: Bronx

first: Evan

last: Der

state: NY

address: 1300 Morris Park Avenue

department: Rheumatology

institute: Albert Einstein College of Medicine

data_processing:
Illumina Casava1.8.2 software used for basecalling.
FASTQ files were aligned to the GRCm38 whole genome using STAR aligner v2.5.3a.
Reads were collected per feature using featureCounts v1.26.0 and the ensembl 88 GTF collapsing on the gene level.
Reads were then either normalized to by transcripts per million (TPM) or with DESeq2 v1.16.1.
Genome_build: GRCm38
Supplementary_files_format_and_content: tab-delimited text file include raw counts per feature of sequencing reads for each sample.

source_name: choroid plexus

extract_protocol:
The choroid plexus were removed, flash frozen in liquid nitrogen and RNA was harvested using Zymo microprep kit.
RNA libraries were prepared for sequencing with the Illumina TruSeq RNA Sample Prep Kit v2 using standard Illumina protocols and multiplexed using standardard Illumina barcodes and run over two lanes.

tag: strain/genotype

value: MRL/+

value: 16 weeks

value: choroid plexus


title: plus_12wk_3

value: 12 weeks


title: Tabula Muris Senis (bulk RNA-seq) [F7_384Bulk_Plate3_S127]

value: Bone

value: 1 months postnatal


title: plus_12wk_2


title: Tabula Muris Senis (bulk RNA-seq) [F8_384Bulk_Plate1_S128]

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F8_384Bulk_Plate2_S128]

value: 18 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F7_384Bulk_Plate1_S127]

value: Spleen

value: 27 months postnatal

value: Male


title: lpr_16wk_6

value: MRL/lpr


title: plus_16wk_3


title: plus_12wk_1


title: input_P6D7A5

value: male

value: mESC

value: Dox


title: Tabula Muris Senis (bulk RNA-seq) [F7_384Bulk_Plate2_S127]

value: BAT

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F6_384Bulk_Plate3_S126]

value: Pancreas


title: lpr_16wk_5

value: 16 weeks


title: input [20180831_7540]

source_name: input

value: murine embryonic stem cells (mESCs)


title: lpr_16wk_4

value: choroid plexus


title: Tabula Muris Senis (bulk RNA-seq) [F6_384Bulk_Plate1_S126]

value: Marrow

value: 6 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [F5_384Bulk_Plate3_S125]

value: Heart

value: 15 months postnatal


title: lpr_16wk_3


title: Tabula Muris Senis (bulk RNA-seq) [F6_384Bulk_Plate2_S126]

value: 18 months postnatal


title: lpr_16wk_2


title: lpr_16wk_1


title: Tabula Muris Senis (bulk RNA-seq) [F4_384Bulk_Plate3_S124]

value: Brain

value: 21 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [F9_384Bulk_Plate1_S129]


title: lpr_12wk_5

value: MRL/lpr

value: 12 weeks


title: lpr_12wk_6


title: lpr_12wk_3


title: lpr_12wk_2


title: Tabula Muris Senis (bulk RNA-seq) [F3_384Bulk_Plate1_S123]

value: Liver


title: plus_16wk_2

value: MRL/+


title: Tabula Muris Senis (bulk RNA-seq) [F3_384Bulk_Plate3_S123]

value: SCAT

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F4_384Bulk_Plate1_S124]

value: Lung

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F23_384Bulk_Plate2_S143]

value: Small Intestine


title: Tabula Muris Senis (bulk RNA-seq) [F4_384Bulk_Plate2_S124]


title: lpr_12wk_1

value: choroid plexus


title: Tong

city: Shanghai

first: Lijian

last: Hui

address: yueyang road 320

department: SIBCB

country: China

institute: CEMCS, CAS

data_processing:
The reads were mapped to the human reference genome (HG38) using TopHat2
Cufflinks algorithm was used to calculate gene expressions. Then the expression profiles of all samples were normalized by the fragments per kilobase of exon per million fragments mapped (FPKM) method.
Genome_build: HG38
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample

source_name: cell line

extract_protocol:
Total RNA was extracted using Trizol (Invitrogen) according to the manufacturer’s instructions.
RNA libraries were prepared for sequencing using standard Illumina protocols.

value: Tong

tag: library barcodes

value: GGCTAC


title: Tabula Muris Senis (bulk RNA-seq) [F22_384Bulk_Plate2_S142]


title: SNU-761

value: AGTCAA


title: SNU-886

value: GTCCGC


title: SNU-878

value: CCGTCC


title: Tabula Muris Senis (bulk RNA-seq) [F5_384Bulk_Plate2_S125]

value: GAT

value: Female


title: SNU-475

value: CAGATC


title: Tabula Muris Senis (bulk RNA-seq) [F21_384Bulk_Plate1_S141]

value: Bone

value: 1 months postnatal

value: Male


title: input [20180803_7416]

value: murine embryonic stem cells (mESCs)


title: Tabula Muris Senis (bulk RNA-seq) [F22_384Bulk_Plate1_S142]

value: Skin


title: SNU-739

value: GTGGCC


title: Tabula Muris Senis (bulk RNA-seq) [F20_384Bulk_Plate2_S140]

value: 12 months postnatal


title: lpr_12wk_4

value: MRL/lpr

value: 12 weeks


title: SNU-449

value: ATGTCA


title: Tabula Muris Senis (bulk RNA-seq) [F20_384Bulk_Plate1_S140]

value: Marrow

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F5_384Bulk_Plate1_S125]

value: Spleen


title: SNU-423

value: TTAGGC


title: Tabula Muris Senis (bulk RNA-seq) [F2_384Bulk_Plate2_S122]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [F2_384Bulk_Plate1_S122]

value: 15 months postnatal


title: SNU-354

value: GTTTCG


title: SNU-398

value: CGATGT


title: SNU-387

value: GGCTAC


title: SNU-368

value: GTGAAA


title: Tabula Muris Senis (bulk RNA-seq) [F21_384Bulk_Plate2_S141]

value: 1 months postnatal

value: Female


title: SNU-182

value: ACAGTG


title: SK-HEP-1

value: GTGGCC


title: Tabula Muris Senis (bulk RNA-seq) [F23_384Bulk_Plate1_S143]

value: Skin

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F19_384Bulk_Plate1_S139]


title: Tabula Muris Senis (bulk RNA-seq) [F18_384Bulk_Plate1_S138]

value: MAT

value: 12 months postnatal


title: PLC8024

value: ATGTCA


title: PLC/PRF/5

value: CGTACG


title: Tabula Muris Senis (bulk RNA-seq) [F17_384Bulk_Plate2_S137]

value: BAT

value: 18 months postnatal

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [F17_384Bulk_Plate1_S137]

value: Liver


title: Mahlavu

value: Mahlavu

value: CTTGTA


title: Tabula Muris Senis (bulk RNA-seq) [F16_384Bulk_Plate1_S136]

value: SCAT

value: 21 months postnatal


title: Li-7

value: GTCCGC


title: Tabula Muris Senis (bulk RNA-seq) [F2_384Bulk_Plate3_S122]


title: JHH-7

value: GATCAG


title: Tabula Muris Senis (bulk RNA-seq) [F16_384Bulk_Plate2_S136]

value: WBC

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F18_384Bulk_Plate2_S138]

value: 24 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F14_384Bulk_Plate3_S134]

value: missing


title: JHH-5

value: TGACCA


title: Tabula Muris Senis (bulk RNA-seq) [F14_384Bulk_Plate2_S134]

value: 9 months postnatal


title: JHH-6


title: Tabula Muris Senis (bulk RNA-seq) [F14_384Bulk_Plate1_S134]

value: Marrow


title: JHH-2

value: AGTTCC


title: Tabula Muris Senis (bulk RNA-seq) [F13_384Bulk_Plate2_S133]

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [F15_384Bulk_Plate2_S135]

value: BAT

value: Male


title: Tabula Muris Senis (bulk RNA-seq) [F13_384Bulk_Plate3_S133]

value: Small Intestine

value: 12 months postnatal


title: Huh-7

value: TAGCTT


title: Tabula Muris Senis (bulk RNA-seq) [F13_384Bulk_Plate1_S133]

value: Kidney


title: Tabula Muris Senis (bulk RNA-seq) [F12_384Bulk_Plate3_S132]

value: 18 months postnatal


title: Huh-1

value: ATTCCT


title: Huh-6

value: ATCACG


title: JHH-1

value: GCCAAT


title: MHCC-97H


title: HLE

value: HLE

value: GAGTGG


title: Tabula Muris Senis (bulk RNA-seq) [F15_384Bulk_Plate1_S135]

value: 1 months postnatal


title: Hep3B

value: GTGAAA


title: HepG2

value: ACTTGA


title: Tabula Muris Senis (bulk RNA-seq) [F12_384Bulk_Plate1_S132]

value: Lung

value: 15 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F11_384Bulk_Plate2_S131]

value: Brain

value: 3 months postnatal

value: Female


title: Tabula Muris Senis (bulk RNA-seq) [F12_384Bulk_Plate2_S132]

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F10_384Bulk_Plate3_S130]

value: 21 months postnatal

value: Male


title: CLC9

value: ACAGTG


title: CLC8

value: AGTTCC


title: Tabula Muris Senis (bulk RNA-seq) [F11_384Bulk_Plate3_S131]

value: Marrow


title: Tabula Muris Senis (bulk RNA-seq) [F10_384Bulk_Plate1_S130]

value: Pancreas

value: 9 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [F11_384Bulk_Plate1_S131]

value: Heart

value: 27 months postnatal


title: CLC30

value: AGTCAA


title: JHH-4

value: TAGCTT


title: Tabula Muris Senis (bulk RNA-seq) [F1_384Bulk_Plate2_S121]

value: Bone


title: Tabula Muris Senis (bulk RNA-seq) [F10_384Bulk_Plate2_S130]

value: MAT


title: CLC3

value: ACTTGA


title: CLC29

value: ATGTCA


title: HLF

value: HLF

value: ACTGAT


title: Tabula Muris Senis (bulk RNA-seq) [F1_384Bulk_Plate1_S121]

value: Skin

value: 18 months postnatal


title: CLC28


title: Tabula Muris Senis (bulk RNA-seq) [E9_384Bulk_Plate2_S105]

value: Female


title: CLC26

value: GCCAAT


title: CLC27

value: GATCAG


title: Tabula Muris Senis (bulk RNA-seq) [E9_384Bulk_Plate1_S105]

value: GAT

value: 15 months postnatal

value: Male


title: CLC25

value: GGCTAC


title: Tabula Muris Senis (bulk RNA-seq) [E8_384Bulk_Plate2_S104]

value: Lung


title: CLC24

value: CAGATC


title: Tabula Muris Senis (bulk RNA-seq) [E8_384Bulk_Plate1_S104]

value: Marrow


title: CLC23


title: CLC31

value: CTTGTA


title: CLC22


title: CLC21


title: CLC20


title: Tabula Muris Senis (bulk RNA-seq) [E7_384Bulk_Plate2_S103]

value: BAT

value: 3 months postnatal


title: CLC19

value: ACAGTG


title: Tabula Muris Senis (bulk RNA-seq) [E8_384Bulk_Plate3_S104]

value: SCAT

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [E7_384Bulk_Plate1_S103]

value: MAT


title: Tabula Muris Senis (bulk RNA-seq) [F1_384Bulk_Plate3_S121]

value: Small Intestine

value: 12 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [E6_384Bulk_Plate3_S102]

value: Female


title: CLC18

value: GATCAG


title: Tabula Muris Senis (bulk RNA-seq) [E6_384Bulk_Plate1_S102]


title: Tabula Muris Senis (bulk RNA-seq) [E6_384Bulk_Plate2_S102]

value: 24 months postnatal


title: CLC15

value: TAGCTT


title: CLC17

value: TGACCA


title: Tabula Muris Senis (bulk RNA-seq) [E5_384Bulk_Plate3_S101]

value: Spleen

value: 9 months postnatal


title: CLC14

value: ATGTCA


title: Tabula Muris Senis (bulk RNA-seq) [E5_384Bulk_Plate1_S101]

value: Limb Muscle

value: Male


title: CLC10

value: CGATGT


title: CLC12

value: ATCACG


title: Tabula Muris Senis (bulk RNA-seq) [E7_384Bulk_Plate3_S103]


title: Tabula Muris Senis (bulk RNA-seq) [E9_384Bulk_Plate3_S105]

value: Brain


title: Tabula Muris Senis (bulk RNA-seq) [E4_384Bulk_Plate2_S100]

value: Marrow

value: 21 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [E4_384Bulk_Plate1_S100]

value: 3 months postnatal


title: Tabula Muris Senis (bulk RNA-seq) [E3_384Bulk_Plate3_S99]

value: Bone