title: Caco-2 after STEC EH41 interaction, time 23

city: Sao Paulo

first: Carlos

middle: Alberto

last: Moreira-Filho

state: SP

address: Av. Dr. Eneas Carvalho de Aguiar 647

department: Departments of Pediatrics

country: Brazil

institute: Faculdade de Medicina da Universidade de Sao Paulo

description: Gene expression from Caco-2 cells after interaction of STEC strain EH41

hyb_protocol: 1.5 ug of Cy3-labelled cRNA (specific activity >10.0 pmol Cy3/ug cRNA) was fragmented at 60°C for 30 minutes and hybridized to Agilent Whole Human Genome Oligo Microarrays (G4845A) for 17 hours at 65°C in a rotating Agilent hybridization oven.

scan_protocol: Slides were scanned immediately after washing on the Agilent Bundle using one color scan setting for 4x44k array slides.

data_processing: The scanned images were analyzed with Feature Extraction Software 9.5.3 (Agilent) and considering spots present none or only one flag (i.e. low intensity, saturation, controls, etc.). The selected transcripts were used for analysis using the R software and considering any NA per group and the expression values in Log (base 2).

source_name: Caco-2 cells, STEC interaction

label_protocol: Cyanine-3 (Cy3) labeled cRNA was prepared from 0.1 ug RNA using the One-Color Microarray-Based Gene Expression Analysis - Quick Amp Labeling (Agilent) according to the manufacturer's instructions, followed by RNeasy column purification (Qiagen). RNA concentration and purity was determined by reading the absorbance at 260 and 280 nm on a spectrophotometer (NanoVue, GE Health Care, USA).

extract_protocol: The cell lysate was collected and total RNA extraction was accomplished using the RNeasy Mini kit (Qiagen, Valencia, CA). RNA purity analysis and quantification was done using the NanoVue spectrophotometer. RNA quality was assessed on the Agilent BioAnalyzer 2100 (Agilent, Santa Clara, CA). All samples presenting RIN ≥ 7.0 were stored at -80°C until use in hybridization experiments.

treatment_protocol: The Caco-2 cells were cultured in T flasks (25 cm2) and DMEM with FBS (10%) and penicillin-streptomycin (100 U/mL-100 μg/mL) in a 5% CO2 at 37oC. The cells were grown until confluence and the formation of a polarized epithelial cell monolayer. Twenty-four hours prior to interaction assays the cells were washed three times with 1X phosphate buffered saline and incubated with antibiotic-free DMEM containing 10% fetal bovine serum. Interaction assays were performed with 400 µL (Abs550=0.35) of bacterial culture placed on a Caco-2 monolayer. Subsequently, the cell cultures were incubated in 5% CO2 at 37oC for different time intervals. The time series - equally spaced times of 7.5 min up to 3 h – encompassed a total of 25 samples (T0 to T24). In T0 the Caco-2 cells were recovered just after bacterial inoculation. After enterocyte-STEC interaction, the cells were washed 5 times with 1X phosphate buffered saline. Subsequently, Caco-2 cells were lysed directly in the culture flasks with 600 µL of Buffer RLT (Qiagen, Valencia, CA) for RNA extraction.


title: L16_1507_Rat_7_Adrenal

status: Public on Jul 15 2019

type: SRA

city: Cambridge

first: Sahin

last: Naqvi

state: MA

address: 455 Main St

country: USA

institute: Whitehead Institute

description:
rat.salmon.tximport.counts.txt
rat.salmon.tximport.tpm.txt
rat.stringtie.gtf
rat.tx2geneid.txt

library_source: transcriptomic

data_processing:
Image analysis and base calling was done using the standard Illumina pipeline for HiSeq2500
Libraries from the non-human mammals were mapped to their respective reference genomes using STAR v2.5.0 with the following parameters: --outFilterMultimapNmax 50 --outFilterMismatchNmax 999 --outFilterMismatchNoverReadLmax 0.15
StringTie v1.3.3b with the --rf parameter was run on each resulting .bam file to assemble novel isoforms relative to the reference transcriptome annotation
The sets of novel and existing transcript annotations from each library were then compiled into a single set of annotations for each species using the --merge option in StringTie v1.3.3b
Abundances for these sets of transcripts for each species were then quantified using salmon v0.9.1 with the following parameters/flags: --seqBias, --gcBias, --useVBOpt
The tximport R package (with countsFromAbundance = “lengthScaledTPM”) was used to sum transcript-level counts and transcripts per million (TPM) values from salmon to the gene level for all transcripts with the following class codes: c, j, e, o, =, u
Genome_build: cyno, macFas5; dog, canFam3; mouse, mm10; rat, rn6
Supplementary_files_format_and_content: Transcript annotations for each species are provided as .gtf files. Assignments of transcripts (Ensembl ID for known, Stringtie ID for novel) to genes (Ensembl ID) along with transcript class codes are provided as tab-delimited .txt files. Gene-level TPM and counts are provided as tab-delimited .txt files

molecule: polyA RNA

organism: Rattus norvegicus

source_name: Adrenal

growth_protocol: standard lab/breeding colony conditions

extract_protocol:
Tissues were isolated from freshly sacrificed animals (< 1 hour from time of death to tissue fixation), washed in cold PBS, and stored in RNALater (Ambion) per the manufacturer’s instructions. Each sample was then homogenized in a bead-mill in Trizol and total RNA was isolated by and treated with DNAse on a Qiagen miRNEasy column
Libraries were prepared using the TruSeq mRNA library kit (Illumina) according to manufacturer’s instructions with the following modifications: After prep, libraries were size-selected using 2% agarose gels on the PippinHT system (Sage Science) with a capture window of 300-600 bases. The size-selected material was then subjected to one additional cycle of PCR with fresh reagents and P5/P7 primers (Illumina) to ensure all library fragments were fully double-stranded. This step significantly reduced the percentage of smaller fragments co-purifying in the final gel size-selection. After PCR, libraries were size-selected a second time on the PippinHT with the same settings

treatment_protocol: RNALater (Ambion)

tag: organism common name

value: Rat

tag: strain

value: Brown Norway

tag: individual

tag: age

value: 9 weeks

tag: rna integry number (rin)

tag: library prep batch


title: HIV_specific_CD4_ T cells_VC6

type: RNA

city: Montreal

first: Daniel

middle: Elias

last: Kaufmann

state: Quebec

address: 900 Rue St. Denis

country: Canada

institute: CRCHUM

hyb_protocol: 5 µg DNA target was hybridized on GeneChip® Clariom™ D, human (ThermoFisher Scientific) and incubated at 450C in the Genechip® Hybridization oven 640 (Affymetrix) for 17 hours at 60 rpm. GeneChips were then washed in a GeneChips® Fluidics Station 450 (Affymetrix) using Applied Biosystems™ Hybridization Wash and Stain kit according to the manufacturer’s instructions (Applied Biosystems™)

scan_protocol: The microarrays were finally scanned on a GeneChip® scanner 3000 (Affymetrix).

data_processing: The preprocessing of the microarray data was done in R v3.3.3 using the oligo package47 v1.38.0 using rma function.

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: CD154+ CD69+ HIV-specific CD4 T cells from PBMCs

label_protocol: Sense-strand cDNA was synthesized from total RNA using a fixed volume of 3µL. Fragmentation and labeling were performed to produce ss-DNA with the Applied Biosystems™ GeneChip® WT Pico Terminal Labeling Kit according to manufacturer’s instructions (Applied Biosystems™).

growth_protocol: Cryopreserved PBMCs were thawed and rested at 37°C for 3 hours.

extract_protocol: Total RNA was purified using the RNeasy Plus Micro Kit (Qiagen) according to manufacturer's instructions.

treatment_protocol: A CD40 blocking antibody (Miltenyi Biotec, clone HB14) was added 15 minutes prior to stimulation with a gag peptide pool.  Following a 9 hr incubation, HIV-specific CD4 T cells were identified based on the co-upregulation of CD40L and CD69 and were live-sorted directly in RLT lysis buffer (Qiagen).

tag: disease status

value: Viremic Controller

tag: cell type

value: PBMCs


title: HIV_specific_CD4_ T cells_VC8


title: HIV_specific_CD4_ T cells_VC3


title: L16_1282_Rat_6_Thyroid

source_name: Thyroid


title: P1_1.5MI_rep1_input

city: New York

first: Zhaoning

last: Wang

state: New York

address: 701 West 168th Street Hammer 14 - 1410

department: Genetics and Development

institute: Columbia University

library_source: genomic

data_processing:
Quality control of RNA-Seq data was performed using FastQC Tool (Version 0.11.4).
ChIP-seq raw reads were aligned to mouse (mm10) genome assembly using Bowtie2 (Version 2.3.4) with default parameters.
For H3K27ac samples, duplicated reads were removed from further analysis. MACS2 (Version 2.1.1) was first applied to each sample to perform peaking calling using the “-nomodel” parameter and was next applied to merged pseudo samples of the biological duplicates14. Only the peaks that are present in both replicates as well as the merged pseudo sample, defined by at least 50% overlapping of the peak coordinates, were kept as real peaks for further analyses.
To compare ChIP-seq signal intensities between MI and sham samples, diffbind (Version 1.16.3) was applied to calculate the normalized ChIP-seq enrichment score with summits=250. Cutoff values of absolute fold change greater than 2.0 and false discovery rate less than 0.05 were used for differential peak analysis between sample groups.
The normalized peak scores calculated using the TMM function in edgeR were plotted in the heatmaps to show peak intensity across timepoints.
For H3K27me3 samples, duplicates and X-chromosome mapped reads were removed. MACS2 was applied to each biological sample using “--broad-cutoff 0.01 –nomodel” parameter.
Diffbind was applied to calculate the differentially bound peak with summits=500. Fold change value of two and FDR less than 0.05 were used as cutoffs.
Genome_build: mm10

molecule: genomic DNA

organism: Mus musculus

source_name: Mouse ventricle below left anterior descending artery ligation plane

extract_protocol:
Each heart was dissected in ice-cold PBS and a transverse cut on ligation plane was made, separating it into above ligation plane (ALP) part and below ligation plane (BLP) part. BLP parts were flash-frozen with liquid nitrogen and stored in -80°C for RNA-Seq. The collected tissue samples were ground to powder in liquid nitrogen, and crosslinked with 2% formaldehyde in PBS for 30 min and quenched with 0.125M glycine for 10 min at room temperature. Crosslinked samples were then washed with cold PBS and further homogenized with a Dounce tissue grinder. Samples were collected by a brief spin, and treated with 10 mM Tris-HCl (pH 8.0), 10mM NaCl and 0.2% NP-40 for 30 min to collect nuclei. After nuclear extraction, chromatin was sheared on a Bioruptor Pico (Diagenode) for 20 cycles (30 sec on/ 30 sec off for each cycle) at 4°C in sonication buffer (0.1% SDS, 1% Triton X-100, 10 mM Tris-HCl, 1 mM EDTA, 0.1% sodium deoxycholate, 0.25% sarkosyl, 1 mM DTT, 1x cOmplete Protease Inhibitor Cocktail (Roche), and 1 mM PMSF, pH 8.0). After sonication, 1% of the sonicated chromatin from each sample was taken out as “input” samples. The remaining sonicated chromatin was evenly split for H3K27ac or H3K27me3 ChIP. Sonication buffer was added to make the final volume to 1 mL. NaCl was then added to a final concentration of 300 mM for each sample. 1 µg H3K27ac antibody (Diagenode, C15410196) or H3K27me3 (Diagenode, C15410195) was added to each sample and incubated at 4°C overnight with gentle rotation. The next day, 30 µL of pre-washed Dynabeads Protein G (Invitrogen, 10004D) was added to each sample for a two-hour incubation. After that, the beads were washed twice with 1 mL RIPA 0 buffer (0.1% SDS, 1% Triton X-100, 10 mM Tris-HCl, 1 mM EDTA, 0.1% sodium deoxycholate, pH 8.0), twice with 1 mL RIPA 0.3 buffer (0.1% SDS, 1% Triton X-100, 10 mM Tris-HCl, 1 mM EDTA, 0.1% sodium deoxycholate, 300 mM NaCl, pH 8.0), twice with 1 mL LiCl wash buffer (250 mM LiCl, 0.5% IGEPAL CA-630, 0.5% sodium deoxycholate, 1 mM EDTA, 10 mM Tris-HCl, pH 8.0), and finally twice with 1 mL TE buffer (10 mM Tris-HCl, 1 mM EDTA, pH 8.0). For each ChIP sample or input sample, 100 uL of SDS elution buffer (1% SDS, 10 mM EDTA, 50 mM Tris-HCl, pH 8.0) was added and incubation was done at 65°C overnight on a ThermoMixer (Eppendorf) at 1000 rpm. The next day, supernatant was collected and further treated with 0.5 µg RNaseA (Sigma, 11119915001) for 30 min at 37°C, followed by 20 µg Proteinase K (NEB, P8107S) treatment at 37°C for 2h. DNA was recovered using MinElute PCR Purification Kit (QIAGEN, 28004) according to manufacturer’s protocol.
ChIP-Seq libraries were generated using NEBNext Ultra II DNA Library Prep Kit for Illumina (NEB, E7645L) according to manufacturer’s protocol.

tag: surgery performed at developmental age

value: Postnatal day 1

tag: sample collected at post-surgical day

value: day 1.5

tag: surgery type

value: MI

tag: antibody

value: input


title: P8+7Sham_rep3

data_processing:
Quality control of RNA-Seq data was performed using FastQC Tool (Version 0.11.4).
Sequencing reads were aligned to mouse GRCm38 (mm10) reference genome using HiSTAT2 (Version 2.0.4) with default settings and --rna-strandness F.
Aligned reads were counted using featurecount (Version 1.6.0) per gene ID.
Differential gene expression analysis was performed with the R package edgeR (Version 3.20.5) using the GLM approach. For each comparison, genes with more than 1 CPM (Count Per Million) in at least three samples were considered as expressed and were used for calculating normalization factor. Cutoff values of absolute fold change greater than 2.0 and false discovery rate less than 0.01 were used to select differentially expressed genes between sample group comparisons. Normalized gene CPM values were used to calculate RPKM (Reads Per Kilobase per Million mapped reads) values, which were then used for heatmap plotting.
Genome_build: mm10
Supplementary_files_format_and_content: tab-delimited text files including raw count values, CPM values or RPKM values for each sample

source_name: Mouse ventricle approximate to below left anterior descending artery ligation plane in age-matched MI samples

extract_protocol:
Each heart was dissected in ice-cold PBS and a transverse cut on ligation plane was made, separating it into above ligation plane (ALP) part and below ligation plane (BLP) part. BLP parts were flash-frozen with liquid nitrogen and stored in -80°C for RNA-Seq. The collected tissue samples were ground to powder in liquid nitrogen, resuspended in 1 mL Trizol per 50 mg of tissue, and homogenized using 20G1/2 needles. After chloroform extraction, the aqueous phase was mixed with an equal volume of 75% ethanol and further purified using RNeasy Mini Kit (QIAGEN, 74104) according to manufacturer’s protocol.
Stranded mRNA-Seq libraries were generated using KAPA mRNA HyperPrep Kit (Roche, KK8581) following manufacturer’s protocol.

value: Postnatal day 8

value: day 7

value: Sham


title: HIV_specific_CD4_ T cells_VC1


title: HIV_specific_CD4_ T cells_VC2


title: P8+7Sham_rep2


title: HIV_specific_CD4_ T cells_CP12

value: Chronic Progressor


title: L16_1512_Rat_7_Liver

source_name: Liver


title: P1_1.5MI_rep2_H3K27me3


title: L16_1436_Rat_6_Spleen

source_name: Spleen


title: P1_1.5MI_rep1_H3K27ac


title: L16_1273_Rat_6_Skin

source_name: Skin


title: P8+7Sham_rep1


title: Caco-2 after STEC EH41 interaction, time 24

tag: cell line


title: Caco-2 after STEC EH41 interaction, time 21


title: L16_1359_Rat_6_Pituitary

source_name: Pituitary


title: HIV_specific_CD4_ T cells_CP11


title: P8+7MI_rep3


title: Caco-2 after STEC EH41 interaction, time 22


title: HIV_specific_CD4_ T cells_VC10


title: Caco-2 after STEC EH41 interaction, time 20


title: L16_1407_Rat_6_Muscle

source_name: Muscle


title: P8+7MI_rep2


title: Caco-2 after STEC EH41 interaction, time 19


title: Caco-2 after STEC EH41 interaction, time 18


title: P8+7MI_rep1


title: L16_1140_Rat_6_Lung

source_name: Lung


title: HIV_specific_CD4_ T cells_CP9


title: HIV_specific_CD4_ T cells_CP10


title: HIV_specific_CD4_ T cells_CP7


title: L16_1067_Rat_6_Liver


title: P8+3Sham_rep3

value: day 3


title: L16_1281_Rat_6_Heart

source_name: Heart


title: P8+3Sham_rep2


title: P8+3Sham_rep1


title: Caco-2 after STEC EH41 interaction, time 16


title: HIV_specific_CD4_ T cells_CP8


title: Caco-2 after STEC EH41 interaction, time 15


title: L16_1385_Rat_6_Colon

source_name: Colon


title: HIV_specific_CD4_ T cells_CP6


title: CMV-specific CD4 cells_EC8_norm2

data_processing: The preprocessing of the microarray data was done in R v3.3.3 using the oligo package47 v1.38.0 using rma function. Combat (sva package 3.30.1) has been applied for batch normalization of samples using 4 replicates as reference for the normalization.

source_name: CMV-specific CD4 cells_EC8_norm2

value: CD154+ CD69+ CMV-specific CD4 T cells from PBMCs

tag: group

value: Elite controller

tag: microarray batch


title: L16_1599_Rat_6_Brain

source_name: Brain


title: CMV-specific CD4 cells_CP3_norm2

source_name: CMV-specific CD4 cells_CP3_norm2


title: P8+3MI_rep3


title: L16_1153_Rat_6_Adrenal


title: P8+3MI_rep2


title: P8+3MI_rep1


title: CMV-specific CD4 cells_CP3_norm1

source_name: CMV-specific CD4 cells_CP3_norm1


title: L16_1323_Rat_5_Thyroid


title: Caco-2 after STEC EH41 interaction, time 17

source_name: Caco-2 cells, STEC interaction


title: Caco-2 after STEC EH41 interaction, time 12


title: P8+1.5Sham_rep3


title: Caco-2 after STEC EH41 interaction, time 11


title: Caco-2 after STEC EH41 interaction, time 13


title: Caco-2 after STEC EH41 interaction, time 14


title: HIV_specific_CD4_ T cells_CP3

source_name: CD154+ CD69+ HIV-specific CD4 T cells from PBMCs


title: L16_1361_Rat_5_Spleen


title: HIV_specific_CD4_ T cells_CP2


title: HIV_specific_CD4_ T cells_CP5


title: HIV_specific_CD4_ T cells_CP1


title: L16_1334_Rat_5_Skin


title: P8+1.5Sham_rep2


title: CMV-specific CD4 cells_EC8_norm1

source_name: CMV-specific CD4 cells_EC8_norm1


title: L16_1136_Rat_5_Lung


title: P8+1.5MI_rep3

source_name: Mouse ventricle below left anterior descending artery ligation plane


title: P8+1.5Sham_rep1

source_name: Mouse ventricle approximate to below left anterior descending artery ligation plane in age-matched MI samples


title: L16_1370_Rat_5_Liver

source_name: Liver


title: L16_1178_Rat_5_Muscle


title: P8+1.5MI_rep1


title: Caco-2 after STEC EH41 interaction, time 9


title: Caco-2 after STEC EH41 interaction, time 8


title: P8+1.5MI_rep2


title: P1+7Sham_rep3


title: L16_1135_Rat_5_Colon


title: L16_1080_Rat_5_Heart


title: Caco-2 after STEC EH41 interaction, time 4


title: Caco-2 after STEC EH41 interaction, time 5


title: Caco-2 after STEC EH41 interaction, time 6


title: Caco-2 after STEC EH41 interaction, time 7


title: P1+7Sham_rep2


title: Caco-2 after STEC EH41 interaction, time 3


title: L16_1311_Rat_5_Brain


title: HIV-specific CD4 T cells_EC13

tag: controls

value: Test


title: HIV-specific CD4 T cells_EC15


title: L16_1061_Rat_5_Adrenal

source_name: Adrenal

value: Rat


title: HIV-specific CD4 T cells_EC10


title: HIV-specific CD4 T cells_EC9


title: HIV-specific CD4 T cells_EC11


title: HIV-specific CD4 T cells_EC12


title: L16_1260_Rat_4_Thyroid

source_name: Thyroid

value: Brown Norway


title: HIV-specific CD4 T cells_EC8


title: Caco-2 after STEC EH41 interaction, time 2


title: P1+7MI_rep3


title: P1+7Sham_rep1


title: L16_1053_Rat_4_Spleen

source_name: Spleen

value: 9 weeks


title: P1+7MI_rep1


title: P1+7MI_rep2


title: L16_1087_Rat_4_Pituitary

source_name: Pituitary


title: P1+3Sham_rep2


title: P1+3Sham_rep3


title: L16_1117_Rat_4_Muscle

source_name: Muscle


title: L16_1391_Rat_4_Skin

source_name: Skin


title: Caco-2 after STEC Ec472 interaction, time 24

description: Gene expression from Caco-2 cells after interaction of STEC strain Ec472


title: Caco-2 after STEC Ec472 interaction, time 23


title: Caco-2 after STEC EH41 interaction, time 0


title: Caco-2 after STEC EH41 interaction, time 1


title: L16_1433_Rat_4_Lung

source_name: Lung


title: Caco-2 after STEC Ec472 interaction, time 20


title: Caco-2 after STEC Ec472 interaction, time 21


title: HIV-specific CD4 T cells_EC7


title: P1+3Sham_rep1


title: P1+3MI_rep3


title: HIV-specific CD4 T cells_EC4


title: HIV-specific CD4 T cells_EC1


title: HIV-specific CD4 T cells_CP14_postART

value: ART treated


title: L16_1408_Rat_4_Heart

source_name: Heart


title: Caco-2 after STEC Ec472 interaction, time 22


title: P1+3MI_rep2


title: Caco-2 after STEC Ec472 interaction, time 19


title: HIV-specific CD4 T cells_EC5

value: PBMCs


title: HIV-specific CD4 T cells_EC2


title: P1+3MI_rep1

value: Postnatal day 1


title: L16_1276_Rat_4_Liver


title: HIV-specific CD4 T cells_CP13_postART


title: P1+1.5Sham_rep3

value: day 1.5


title: HIV-specific CD4 T cells_CP11_postART


title: Caco-2 after STEC Ec472 interaction, time 18


title: L16_1050_Rat_3_Thyroid


title: L16_1267_Rat_4_Adrenal


title: P1+1.5Sham_rep2


title: L16_1052_Rat_4_Brain

source_name: Brain


title: P1+1.5Sham_rep1


title: L16_1415_Rat_3_Spleen


title: Caco-2 after STEC Ec472 interaction, time 14


title: Caco-2 after STEC Ec472 interaction, time 17


title: P1+1.5MI_rep3

value: MI


title: L16_1124_Rat_3_Skin


title: Caco-2 after STEC Ec472 interaction, time 16


title: Caco-2 after STEC EH41 interaction, time 10


title: Caco-2 after STEC Ec472 interaction, time 13


title: Caco-2 after STEC Ec472 interaction, time 12


title: HIV-specific CD4 T cells_CP10_postART


title: HIV-specific CD4 T cells_CP6_postART


title: HIV-specific CD4 T cells_CP3_postART


title: L16_1137_Rat_3_Pituitary


title: HIV-specific CD4 T cells_CP8_postART


title: P1+1.5MI_rep1


title: Caco-2 after STEC Ec472 interaction, time 15


title: L16_1410_Rat_3_Muscle


title: F1-LPD-rep3

city: Tsukuba

first: Nhung

middle: Hong

last: Ly

state: Ibaraki

address: 3-1-1 Koyadai, Tsukuba, Ibaraki

country: Japan

institute: Riken

data_processing:
Sequences were mapped to mouse mm10 using CLC Genomics Workbench (Version 7.5.1, Qiagen)
Expression values were quantified as RPKM with DEG tool using CLC (Version 7.5.1, Qiagen)
Genome_build: mm10
Supplementary_files_format_and_content: Txt table files include RPKM values and gene annotations for each sample

extract_protocol:
Total RNA was isolated from iWAT using TRIZOL reagent (Thermo Fisher Scientific, Waltham, MA). RNA quality was evaluated using an RNA 6000 Pico kit (Agilent, Santa Clara, CA). Fifty nanograms of total RNA was used for RNA sequencing (RNA-seq) library preparation with a NEBNext rRNA Depletion Kit and a NEBNext Ultra Directional RNA Library Preparation Kit (New England Biolabs, Ipswich, MA), then 2 × 36 base pair-end sequencing was performed using NextSeq500 (Illumina, San Diego, CA) by Tsukuba i-Laboratory LLP (Tsukuba, Ibaraki, Japan).
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: generation

value: offspring (F1 generation)

tag: paternal diet

value: low-protein diet (LPD)

tag: tissue

value: inguinal white adipose tissue (iWAT)


title: HIV-specific CD4 T cells_CP1_postART


title: L16_1257_Rat_3_Lung

tag: organism common name

tag: strain

tag: individual


title: F1-LPD-rep2

tag: age


title: HIV-specific CD4 T cells_CP14_preART

tag: disease status


title: P1+1.5MI_rep2


title: L16_1417_Rat_3_Liver

tag: rna integry number (rin)

tag: library prep batch


title: F1-LPD-rep1


title: Caco-2 after STEC Ec472 interaction, time 11


title: Caco-2 after STEC Ec472 interaction, time 10


title: HIV-specific CD4 T cells_CP13_preART

tag: cell type


title: F1-CD-rep3

value: control diet (CD)


title: L16_1077_Rat_3_Brain


title: L16_1418_Rat_3_Colon

source_name: Colon


title: F1-CD-rep2


title: Caco-2 after STEC Ec472 interaction, time 7


title: Caco-2 after STEC Ec472 interaction, time 8


title: F1-CD-rep1


title: HIV-specific CD4 T cells_CP11_preART

value: Chronic Progressor


title: Caco-2 after STEC Ec472 interaction, time 9


title: L16_1505_Rat_3_Heart


title: L16_1129_Rat_2_Colon


title: Caco-2 after STEC Ec472 interaction, time 6


title: Caco-2 after STEC Ec472 interaction, time 5


title: L16_1341_Rat_1_Thyroid


title: HIV-specific CD4 T cells_CP8_preART


title: HIV-specific CD4 T cells_CP6_preART


title: F0-CD-rep2

value: F0 generation

tag: diet


title: HIV-specific CD4 T cells_CP10_preART


title: F0-LPD-rep2


title: Caco-2 after STEC Ec472 interaction, time 4


title: Caco-2 after STEC Ec472 interaction, time 3


title: Caco-2 after STEC Ec472 interaction, time 2


title: HIV-specific CD4 T cells_CP1_preART


title: HIV-specific CD4 T cells_CP3_preART


title: CXCR5neg_HIV_specific CD4 T cells_EC8

source_name: PBMCs, CXCR5- CD154+ CD69+ CD4+ T Cells

treatment_protocol: A CD40 blocking antibody (Miltenyi Biotec, clone HB14) and a CXCR5 (clone RF8B2) antibody were added 15 minutes prior to stimulation with a gag peptide pool.  Following a 9 hr incubation, CXCR5+ and CXR5- HIV-specific CD4 T cells (CD40L+ and CD69+) were live-sorted directly in RLT lysis buffer (Qiagen).

tag: diseace status

value: Elite Controller


title: L16_1437_Rat_3_Adrenal


title: F0-CD-rep1


title: Infected 3dpi control B

city: Rehovot

first: Noam

last: Stern-Ginossar

address: 234 herzel

department: Molecular Genetics

country: Israel

institute: Weizmann Institute

description: reads.tab

data_processing:
For the alignment, just read2 was used after trimmiing the first 9 nucelotides by using fastx_trimmer.
Bowtie v1.1.2 (allowing up to 2 mismatches) was used to perform the alignments. First, reads that aligned to human rRNA sequences were discarded. Next, remaining reads were aligned to the human and viral genomes.
All remaining reads were aligned to the human transcriptome (canonical known genes) and the virus splice junctions.
The transcriptome reads were back converted to the gemome, and  merged wiggle file of all reads were generated and used for counting the reads.
Genome_build: hg19 + NC_006273.2
Supplementary_files_format_and_content: The number of reads for each human genes for each sample is given. The format is tab delimited file.

source_name: Infected 3dpi control B

growth_protocol: Primary human foreskin fibroblasts were grown in DMEM with stadard supplements

extract_protocol:
RNA isolation and poly(A) selection were done using the Dynabeads mRNA DIRECT purification kit (Thermo Fisher)
sequencing libraries were prepared using the SENSE total RNA-seq library prep kit (Lexogen)

treatment_protocol: Cells were infected with Merlin strain of HCMV and treated with 10mM Rock inhibitor (Y27632) or with DMSO as control. RNA was extracted 3 days post infection.

tag: virus

value: HCMV

tag: virus strain

value: Merlin

value: fibroblasts


title: CXCR5pos_HIV_specific CD4 T cells_EC10

source_name: PBMCs, CXCR5+ CD45RA-CD154+ CD69+ CD4+ T Cells


title: mARF8 T1s stamens-Rep4 [FL14-27-H]

city: Chapel Hill

first: Jason

last: Reed

state: NC

address: CB #3280, Coker Hall

department: Biology

institute: University of North Carolina at Chapel Hill

data_processing:
Illumina Casava1.7 software used for basecalling.
Low quality cDNA sequences were filtered out with Ea-Utils software
TopHat2 (Trapnell et al., 2009), a splice junction mapper, was used to align cleaned reads against the entire Arabidopsis genome using the TopHat2 default parameters,
The HTSeq: Analyzing High-Throughput Sequencing Data with Python software (Anders et al., 2015) was used with default parameters except for the “stranded = no” mode to generate tables-counts. Tables-counts were analyzed with R packages edgeR
Genome_build: TAIR10
Supplementary_files_format_and_content: raw counts of sequencing reads

organism: Arabidopsis thaliana

source_name: mARF8 T1s stamens

growth_protocol: Plants were grown in 14:10 h day:night cycles for RNA-Seq experiments or 16:8 cycles for qRT-PCR.  Samples for RNA analyses were collected between 1 and 3 hours after dawn, and immediately frozen in liquid nitrogen.  Stage 11 flower buds were 1.5-1.8 mm long, generally corresponding to flowers -3 to -5.  Stamens at this stage still appeared green before turning yellow at flower stage 12.

extract_protocol:
RNA was isolated using the Rneasy Plant Mini kit (Qiagen) according to manufacturer’s instructions.  Libraries were constructed with the Truseq mRNA library prep kit (Illumina) according to manufacturer’s instructions.
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: ecotype background

value: Columbia

tag: genotype

value: mARF8 4B

value: stamens


title: L16_1294_Rat_1_Muscle

value: Rat

value: Brown Norway

value: 9 weeks


title: L16_1122_Rat_1_Spleen


title: L16_1277_Rat_1_Skin


title: CXCR5pos_HIV_specific CD4 T cells_EC8

value: PBMCs


title: Infected 3dpi control A

description: reads.tab

source_name: Infected 3dpi control A


title: F0-LPD-rep1

tag: generation


title: L16_1497_Rat_1_Lung


title: Caco-2 after STEC Ec472 interaction, time 0

source_name: Caco-2 cells, STEC interaction

tag: cell line


title: CXCR5neg_HIV_specific CD4 T cells_EC10


title: Caco-2 after STEC Ec472 interaction, time 1


title: Infected 3dpi Rock inhibitor B

description: reads.tab

source_name: Infected 3dpi Rock inhibitor B


title: L16_1167_Rat_1_Liver

source_name: Liver


title: mARF8 4B stamens-Rep2 [FL14-07-H]

source_name: mARF8 4B stamens

tag: tissue


title: mARF8 3B_stamens-Rep3 [FL14-17-H]

source_name: mARF8 3B stamens


title: L16_1421_Rat_1_Heart

tag: organism common name


title: Infected 3dpi Rock inhibitor A

description: reads.tab

source_name: Infected 3dpi Rock inhibitor A


title: GATA2T354M_F_PB

city: Milwaukee

first: Subramaniam

last: Malarkannan

state: WI

address: 8727 W Watertown Plank Rd

institute: Versiti Blood Research Institute

data_processing:
Raw Illumina sequencing data was demultiplexed and fastq files were generated using 10X Genomics Cellranger mkfastq v1.3.1
Fastq files were aligned to the hg19 genome and unique UMI sums per gene were calculated using 10X Genomics Cellranger count v1.3.1
Genome_build: hg19
Supplementary_files_format_and_content: The three files per sample are 10X cellranger count output from non-empty droplets.  Valid cell barcodes and analyzed genes are present as tab-delimited files.  Unique UMI sums per gene per cell are recorded in market exchange format.

source_name: Blood

extract_protocol:
Cells were washed once with ice-cold PBS containing 10% FBS post-sorting and counted using hemocytometer. After that, the cells were loaded to 10X chromium machine (10X Genomics, Pleasanton, CA) and run through the library preparation procedures following guidance from the Chromium Single Cell 3’ Reagent Kits v2.
scRNA libraries were prepared for sequencing using the guidance from the 10X Chromium Single Cell 3’ Reagent Kits v2

value: Blood

value: NK cells

tag: sorting population

tag: genotype/variation

tag: gender

value: F


title: CXCR5neg_HIV_specific CD4 T cells_EC7


title: mARF8 3B stamens-Rep1 [FL14-06-H]


title: CXCR5neg_HIV_specific CD4 T cells_EC1


title: CXCR5pos_HIV_specific CD4 T cells_EC7


title: L16_1325_Rat_1_Colon

tag: strain

tag: individual

tag: age


title: arf6arf8 stamens-Rep2 [FL14-23-G]

source_name: arf6arf8 stamens


title: arf6arf8 stamens-Rep1 [FL14-20-G]


title: L16_1275_Rat_1_Brain

tag: rna integry number (rin)

tag: library prep batch


title: 26y_F_PB

tag: cell type

value: healthy donor


title: Columbia stamens-Rep3 [FL14-28-F]

source_name: Columbia stamens

value: wild type


title: L16_1395_Rat_1_Adrenal

source_name: Adrenal


title: 25y_F_2_PB


title: 35y_M_BM

source_name: Bone marrow

value: Bone marrow

value: M


title: Columbia stamens-Rep2 [FL14-11-F]


title: CXCR5neg_HIV_specific CD4 T cells_CP8

tag: diseace status

value: Chronic Progressor


title: 25y_M_BM


title: CXCR5pos_HIV_specific CD4 T cells_CP8


title: Columbia stamens-Rep1 [FL14-09-F]


title: U2OS_WT_Suzcom_2

city: Paris Cedex 05

first: Nicolas

last: Servant

address: 26 rue d'ulm

country: France

institute: Institut Curie

data_processing:
Reads were mapped to the concatenated human reference genome (GRCh37/hg19) and Drosophila melanogaster (dm6) with Bowtie2 (2.2.9) using the following parameters: --very-sensitive --end-to-end --reorder.
PCR duplicates were removed with Picard Tools MarkDuplicates (1.97)
BAM files were filtered exclude artifact regions. The merged consensus blacklist was obtained from the Kundaje lab at Stanford University (Stanford, CA, USA).
Reads were extended to 200bp and RPKM normalized counting only reads in bins of length 50 and converted to bigWig format using DeepTools (2.4.1).
Genome_build: GRCh37/hg19
Supplementary_files_format_and_content: bigWig

source_name: osteosarcoma-derived cell line

growth_protocol: ipNF05.5 cells were cultured in DMEM media supplemented with 10% FBS and 1% L-Glutamine and 1% non essential amino acids.

extract_protocol:
Libraries were prepared according to Illumina's DNA Sample Kit (Part# 0801-0303). Briefly, DNA was end-repaired using a combination of T4 DNA polymerase, E. coli DNA Pol I large fragment (Klenow polymerase) and T4 polynucleotide kinase. The blunt, phosphorylated ends were treated with Klenow fragment (32 to 52 exo minus) and dATP to yield a protruding 3- 'A' base for ligation of Illumina's adapters which have a single 'T' base overhang at the 3’ end. After adapter ligation DNA was PCR amplified with Illumina primers for 15 cycles and library fragments of ~250 bp (insert plus adaptor and PCR primer sequences) were band isolated from an agarose gel. The purified DNA was captured on an Illumina flow cell for cluster generation. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.
ChIP-Seq/CUT&RUN

value: WT

tag: chip antibody


title: U2OS_WT_Suzcom_1


title: 26y_F_BM


title: arf6 Pstk_axr3 25-2 gynoecia-Rep4 [FL14-51-E]

source_name: arf6 Pstk_axr3 25-2 gynoecia

tag: ecotype background

value: arf6 Pstk_axr3 15-5

value: gynoecia


title: 25y_F_2_BM


title: arf6 Pstk_axr3 15-5 gynoecia-Rep3 [FL14-50-E]

source_name: arf6 Pstk_axr3 15-5 gynoecia

value: Columbia

tag: genotype


title: U2OS_dEED_Suzcom_1

value: EED KO


title: 25y_F_1_BM


title: U2OS_dCXORF67_Suzcom_2

value: CXORF67 KO


title: 24y_F_BM


title: arf6 Pstk_axr3 25-2 gynoecia-Rep2 [FL14-48-E]


title: CXCR5pos_HIV_specific CD4 T cells_CP7

source_name: PBMCs, CXCR5+ CD45RA-CD154+ CD69+ CD4+ T Cells


title: CXCR5neg_HIV_specific CD4 T cells_CP5

source_name: PBMCs, CXCR5- CD154+ CD69+ CD4+ T Cells


title: U2OS_dCXORF67_Suzcom_1


title: arf6 Pstk_axr3 15-5 gynoecia-Rep1 [FL14-32-E]


title: U2OS_ko-2-H2A-ub

description: Cell Signaling Technology (8240)


title: CXCR5pos_HIV_specific CD4 T cells_CP3


title: CXCR5neg_HIV_specific CD4 T cells_CP3


title: CDK8 analog-sensitive HCT116, 3MB + IFNgamma, replicate 1

city: Aurora

first: Matthew

middle: D

last: Galbraith

state: CO

department: Department of Pharmacology; Linda Crnic Institute for Down Syndrome

institute: University of Colorado Anschutz Medical Campus

description:
HCT116_CDK8as_3MB-IFN_1
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt

data_processing:
Library strategy: PRO-Seq
Signal processing, base-calling, and quality scoring were carried out automatically by the NextSeq 500 RTA software (v2.4.11 Illumina).
Demultiplexing and conversion to FASTQ format was carried out using bcl2fastq (v2.20.0.422, Illumina).
FASTQC (v0.11.5) was used to assess sequence data quality.
Fastq files from 3 separate lanes were merged for each sample to obtain sufficient read depth.
Trimming and filtering of low-quality bases/reads were performed using BBDUK from BBTools (v37.99) and FASTQ-MCF from EAUtils (v1.05).
FastQ Screen (v0.9.1) was used to check for common sequencing contaminants.
Alignment to the Human reference genome (GRCh37/hg19) was carried out using Hisat2 (v2.1.0) in unpaired, no-spliced-alignment mode with a GRCh37/hg19 index.
Alignments were sorted and filtered for mapping quality (MAPQ>10) using Samtools (v1.5).
Gene-level count data for transcription start site (TSS, -30 to +300) and gene body (+301 to end) regions were obtained using featureCounts from the Subread package (v1.6.2) with custom annotation files for single unique TSS and gene body regions per gene.
Genome_build: GRCh37/hg19
Supplementary_files_format_and_content: *_counts.txt: Tab-delimited text files containing gene-level counts for unique TSS or gene body regions per gene for each sample.

source_name: CDK8 analog-sensitive HCT116 cells

growth_protocol: HCT116 cells were grown in McCoy media with pen/strep antibiotics and 5% FBS supplementation.

extract_protocol: Nuclear run-on experiments were performed as described previously (Mahat, D. B., Kwak, H., Booth, G. T., Jonkers, I. H., Danko, C. G., Patel, R. K., et al. (2016). Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq). Nature Protocols, 11(8), 1455–1476. http://doi.org/10.1093/bioinformatics/btq033) with the following modification. The final concentration of non-biotinylated CTP was raised from 0.25uM to 25uM, and the final library clean up and size selection was accomplished using 1X AMPure XP (Beckman).

treatment_protocol: Cells were treated with IFNgamma (control PBS) and/or the ATP analog 3MB-PP1 (control DMSO) for 45 minutes.

value: colorectal carcinoma

tag: treatment

value: 10uM 3MB + 10ng/mL IFNgamma


title: CXCR5pos_HIV_specific CD4 T cells_CP5

value: PBMCs


title: CDK8 analog-sensitive HCT116, 3MB + IFNgamma, replicate 2

description:
HCT116_CDK8as_3MB-IFN_3
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt

tag: cell line


title: CXCR5neg_HIV_specific CD4 T cells_CP2


title: CXCR5neg_HIV_specific CD4 T cells_CP7


title: U2OS_ko-1-H2A-ub

description: Cell Signaling Technology (8240)


title: U2OS_dEED_Suzcom_2


title: CXCR5pos_HIV_specific CD4 T cells_CP2


title: CDK8 analog-sensitive HCT116, IFNgamma, replicate 2

description:
HCT116_CDK8as_DMSO-IFN_3
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt

value: 10ng/mL IFNgamma + DMSO


title: U2OS_ko-2-K27me2

description: Active Motif (61435)


title: CDK8 analog-sensitive HCT116, 3MB-PP1, replicate 2

description:
HCT116_CDK8as_3MB-PBS_3
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt

value: 10uM 3MB-PP1 + PBS


title: Pstk_axr3 gynoecia-Rep1 [FL14-03-D]

source_name: Pstk_axr3 gynoecia

tag: tissue


title: U2OS_ko-2-K27ac

description: Abcam (ab4729)


title: CDK8 analog-sensitive HCT116, 3MB-PP1, replicate 1

description:
HCT116_CDK8as_3MB-PBS_1
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt


title: U2OS_ko-1-K27ac

description: Abcam (ab4729)


title: mARF8 3B_gynoecia-Rep3 [FL14-14-C]

source_name: mARF8 3B gynoecia

value: mARF8 3B


title: CDK8 analog-sensitive HCT116, control, replicate 2

description:
HCT116_CDK8as_DMSO-PBS_3
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt

value: Control (PBS + DMSO)


title: U2OS_ko-1-K27me2

description: Active Motif (61435)


title: Pstk_axr3-1 15-5 gynoecia-Rep3 [FL14-49-D]

source_name: Pstk_axr3-1 gynoecia


title: mARF8 3B_gynoecia-Rep2 [FL14-10-C]


title: U2OS_ko-2-IgG

value: IgG


title: ColxPstk_axr3 25-2 gynoecia-Rep4 [FL14-52-D]

source_name: ColxPstk_axr3 gynoecia


title: CDK8 analog-sensitive HCT116, control, replicate 1

description:
HCT116_CDK8as_DMSO-PBS_1
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt


title: mARF8 gynoecia-Rep4 [FL14-31-C]


title: U2OS_ko-1-IgG


title: Sexaully Induced S. robusta MT- + Roseovarius (SIPR) rep2

city: Jena

first: Emilio

last: Cirri

address: Lessingstrasse 8

country: Germany

institute: Friedrich Schiller University Jena

data_processing:
Paired-end reads were quality-trimmed using FastQ Quality Filter from the FastX Toolkit v. 0.0.13  using the following settings : -q 28, -p 30. Using the Salmon software tool in quasi-mapping mode, the  quality-trimmed reads were mapped to an annotated genes model assembly of S. robusta. To generate the annotated assembly, Illumina paired-end reads and PacBio long reads were combined in a hybrid assembly approach and gene models were annotated using expression data as training for the BRAKER1 pipeline.  The transcript-level abundances generated with Salmon were imported into R (v.3.4.4) and aggregated to gene level counts using the tximport package. Genes with low overall counts (counts-per-million (CPM) < 1 in at least three samples) were removed from the libraries because they have little power for detecting differential expression. Differences in sequencing depth and RNA population were corrected using a weighted trimmed mean of the log expression ratios (TMM) normalization. Preliminary differences between expression profiles of different samples were explored with multi-dimensional scaling (MDS) plots based on the top 500 genes, generated using the plotMDS function included in the EdgeR package.
Genome_build: Sro genome v1.2
Supplementary_files_format_and_content: tab delimited text files includes counts for each sample. Gene ids are located at https://bioinformatics.psb.ugent.be/gdb/seminavis/Version1.0/

organism: Seminavis robusta

source_name: Whole cell

extract_protocol:
RNA was extracted from all samples using the RNeasy® Plant Mini Kit (Qiagen).The 18 sequencing libraries were prepared using Illumina® TruSeq Stranded mRNA kit. The libraries were sequenced (2x75 bp) in one Illumina® NextSeq 500 H150 run.
RNA libraries were prepared for sequencing using standard Illumina protocols

tag: treatments

value: Roseovarius sp.

tag: sexually induced

value: yes


title: mARF8 3B_gynoecia-Rep1 [FL14-08-C]


title: U2OS_WT-2-H2A-ub

description: Cell Signaling Technology (8240)


title: U2OS_WT-1-H2A-ub

description: Cell Signaling Technology (8240)


title: arf6arf8 gynoecia-Rep2 [FL14-22-B]

source_name: arf6arf8 gynoecia


title: Wild type HCT116, IFNgamma, replicate 2

description:
HCT116_WT_DMSO-IFN_3
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt

source_name: Wild type HCT116 cells

tag: genotype/variation

value: Wild-type


title: Wild type HCT116, 3MB + IFNgamma, replicate 1

description:
HCT116_WT_3MB-IFN_1
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt


title: Columbia gynoecia-Rep4 [FL14-33-A]

source_name: Columbia gynoecia

value: wild type


title: U2OS_WT-2-K27me2

description: Active Motif (61435)

value: WT


title: Wild type HCT116, 3MB + IFNgamma, replicate 2

description:
HCT116_WT_3MB-IFN_3
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt


title: Columbia gynoecia-Rep3 [FL14-26-A]

value: gynoecia


title: Wild type HCT116, IFNgamma, replicate 1

description:
HCT116_WT_DMSO-IFN_1
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt


title: U2OS_WT-2-K27ac

description: Abcam (ab4729)


title: Wild type HCT116, 3MB-PP1, replicate 2

description:
HCT116_WT_3MB-PBS_3
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt


title: Columbia gynoecia-Rep2 [FL14-05-A]

value: Columbia


title: Wild type HCT116, 3MB-PP1, replicate 1

description:
HCT116_WT_3MB-PBS_1
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt


title: Pstk_axr3_gynoecia-Rep2 [FL14-12-D]


title: U2OS_WT-1-K27ac

description: Abcam (ab4729)


title: Columbia gynoecia-Rep1 [FL14-01-A]


title: WT-DD12

city: Guangzhou

first: Ma

last: Huan

state: Guangdong

address: 132 East Waihuan Rd, Rm 438 Higher Education Mega

country: China

institute: Sun Yat-Sen University

description: genes.rpkm.xls

data_processing:
Illumina CASAVA 1.8 software used for basecalling.
Qualified reads were obtained after removing raw reads with adapters or of low quality and then aligned to the Neurospora crassa genome by HISAT with default parameters.
RSeQC was used to measured gene expression abundance as reads per kilobase per million mapped reads (RPKM).
Differential expression analysis of two samples was performed using the previous statistics model. The resulting P-values were adjusted using the Benjamini and Hochberg’s approach for controlling the false discovery rate and adjusted P-value <0.05 were assigned as differentially expressed gene.
Genome_build: OR74A
Supplementary_files_format_and_content: tab-delimited text files include RPKM values for each sample

organism: Neurospora crassa

source_name: hyphae

growth_protocol: Strains were growthed in minimal slants for two weeks and cultivated in 2% glucose media under DD condition .

extract_protocol:
RNA was extracted with Trizol reagent, followed by clean-up and treated with DNase I.
RNA libraries were prepared for sequencing using standard Illumina protocols.

treatment_protocol: the wild type strain was cultured under dark for 12h and 20h

tag: light intensity

value: dark

tag: time point

value: 12 hr


title: U2OS_WT-1-IgG


title: WT-DD20

description: genes.rpkm.xls

value: 20 hr


title: Fetal_pancreas_cell_1859

status: Public on Jul 14 2019

city: Stockholm

first: Martin

last: Enge

address: CCK, Z4

department: Dep of Oncology-Pathology

country: Sweden

institute: Karolinska Institute

description:
Single cell from human fetal pancreas
1000101005.F11

data_processing:
Sequencing reads were trimmed, adapter sequences removed and the reads aligned using STAR with default parameters.
Duplicate reads were removed using picard. Transcript counts were obtained using HT-Seq and hg19 UCSC exon/transcript annotations.
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files with raw read values for each sample

source_name: 22wks_fetal pancreas cell_mesenchymal

extract_protocol: Single-cells were collected  in lysis buffer in 96-well plates, followed by reverse transcription with template-switch using an LNA-modified template switch oligo to generate cDNA. After 21 cycles of pre-amplification, DNA was purified and analyzed on an automated Fragment Analyzer (Advanced Analytical). Each cell’s cDNA fragment profile was individually inspected and only wells with successful amplification products (concentration higher than 0.06 ng/ul) and with no detectable RNA degradation were selected for final library preparation. Tagmentation assays and barcoded sequencing libraries were prepared using Nextera XT kit (FC-131-1024; Illumina) according to the manufacturer’s instructions. Barcoded libraries were pooled and subjected to 75 bp paired-end sequencing on the Illumina NextSeq instrument.

tag: gestational week

tag: gestational day

value: Fetal pancreas

value: mesenchymal


title: U2OS_WT-2-IgG


title: Fetal_pancreas_cell_1860

description:
Single cell from human fetal pancreas
1000101005.B12


title: Fetal_pancreas_cell_1858

description:
Single cell from human fetal pancreas
1000102702.F3

source_name: 21wks_fetal pancreas cell_acinar

value: acinar


title: arf6arf8 gynoecia-Rep1 [FL14-02-B]


title: Fetal_pancreas_cell_1856

description:
Single cell from human fetal pancreas
1000101803.B2

source_name: 22wks_fetal pancreas cell_ductal

value: ductal


title: Fetal_pancreas_cell_1855

description:
Single cell from human fetal pancreas
1000101301.G11

source_name: 12wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1854

description:
Single cell from human fetal pancreas
1000102602.D10

source_name: 16wks_fetal pancreas cell_alpha

value: alpha


title: Fetal_pancreas_cell_1852

description:
Single cell from human fetal pancreas
1000101301.B12


title: Fetal_pancreas_cell_1853

description:
Single cell from human fetal pancreas
1000101301.C12


title: Fetal_pancreas_cell_1851

description:
Single cell from human fetal pancreas
1000101903.H9

source_name: 13wks_fetal pancreas cell_beta

value: beta


title: U2OS_WT-1-K27me2

description: Active Motif (61435)

source_name: osteosarcoma-derived cell line


title: Fetal_pancreas_cell_1848

description:
Single cell from human fetal pancreas
1000101903.E9

source_name: 13wks_fetal pancreas cell_delta

value: delta


title: Fetal_pancreas_cell_1850

description:
Single cell from human fetal pancreas
1000101005.D2


title: Fetal_pancreas_cell_1849

description:
Single cell from human fetal pancreas
1000101005.G8


title: Fetal_pancreas_cell_1846

description:
Single cell from human fetal pancreas
1000102602.A8

source_name: 16wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1847

description:
Single cell from human fetal pancreas
1000101301.E2

source_name: 12wks_fetal pancreas cell_endothelial

value: endothelial


title: Fetal_pancreas_cell_1839

description:
Single cell from human fetal pancreas
1000101903.F10


title: Fetal_pancreas_cell_1842

description:
Single cell from human fetal pancreas
1000101803.F9


title: Fetal_pancreas_cell_1840

description:
Single cell from human fetal pancreas
1000101005.H2


title: Fetal_pancreas_cell_1841

description:
Single cell from human fetal pancreas
1000102702.B2


title: Fetal_pancreas_cell_1857

description:
Single cell from human fetal pancreas
1000101301.A9


title: Fetal_pancreas_cell_1836

description:
Single cell from human fetal pancreas
1000101005.A6


title: Fetal_pancreas_cell_1837

description:
Single cell from human fetal pancreas
1000101005.C2


title: Fetal_pancreas_cell_1838

description:
Single cell from human fetal pancreas
1000101301.F4


title: Fetal_pancreas_cell_1835

description:
Single cell from human fetal pancreas
1000101903.E6


title: Fetal_pancreas_cell_1832

description:
Single cell from human fetal pancreas
1000102702.A9


title: Fetal_pancreas_cell_1833

description:
Single cell from human fetal pancreas
1000102701.H6

source_name: 21wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1834

description:
Single cell from human fetal pancreas
1000102602.G9

source_name: 16wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1831

description:
Single cell from human fetal pancreas
1000101005.F4

source_name: 22wks_fetal pancreas cell_endothelial


title: Fetal_pancreas_cell_1830

description:
Single cell from human fetal pancreas
1000102602.B11

source_name: 16wks_fetal pancreas cell_undef

value: undef


title: Fetal_pancreas_cell_1829

description:
Single cell from human fetal pancreas
1000102602.D6


title: Fetal_pancreas_cell_1827

description:
Single cell from human fetal pancreas
1000101301.F12


title: Fetal_pancreas_cell_1828

description:
Single cell from human fetal pancreas
1000101301.F2


title: Fetal_pancreas_cell_1845

description:
Single cell from human fetal pancreas
1000101005.C9


title: Fetal_pancreas_cell_1823

description:
Single cell from human fetal pancreas
1000101301.F9


title: Fetal_pancreas_cell_1824

description:
Single cell from human fetal pancreas
1000102701.A12


title: Fetal_pancreas_cell_1844

description:
Single cell from human fetal pancreas
1000102602.F6


title: Fetal_pancreas_cell_1825

description:
Single cell from human fetal pancreas
1000102602.B5


title: Fetal_pancreas_cell_1826

description:
Single cell from human fetal pancreas
1000102701.H11


title: Fetal_pancreas_cell_1843

description:
Single cell from human fetal pancreas
1000101005.E12


title: Fetal_pancreas_cell_1822

description:
Single cell from human fetal pancreas
1000101903.A11

source_name: 13wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1821

description:
Single cell from human fetal pancreas
1000102702.A10


title: Fetal_pancreas_cell_1820

description:
Single cell from human fetal pancreas
1000101903.F12


title: Fetal_pancreas_cell_1815

description:
Single cell from human fetal pancreas
1000102602.G6

source_name: 16wks_fetal pancreas cell_delta


title: Fetal_pancreas_cell_1814

description:
Single cell from human fetal pancreas
1000101903.H11

source_name: 13wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1816

description:
Single cell from human fetal pancreas
1000101903.C11


title: Fetal_pancreas_cell_1813

description:
Single cell from human fetal pancreas
1000101005.A10

source_name: 22wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1817

description:
Single cell from human fetal pancreas
1000102601.B10

source_name: 16wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1812

description:
Single cell from human fetal pancreas
1000101005.B11


title: Fetal_pancreas_cell_1811

description:
Single cell from human fetal pancreas
1000102601.G9


title: Fetal_pancreas_cell_1810

description:
Single cell from human fetal pancreas
1000102602.E1


title: Fetal_pancreas_cell_1809

description:
Single cell from human fetal pancreas
1000101301.B3


title: Fetal_pancreas_cell_1807

description:
Single cell from human fetal pancreas
1000101803.F1

source_name: 22wks_fetal pancreas cell_ductal


title: Fetal_pancreas_cell_1806

description:
Single cell from human fetal pancreas
1000101301.C3

source_name: 12wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1808

description:
Single cell from human fetal pancreas
1000101301.C4

source_name: 12wks_fetal pancreas cell_blood

value: blood


title: Fetal_pancreas_cell_1805

description:
Single cell from human fetal pancreas
1000101301.E9


title: Fetal_pancreas_cell_1802

description:
Single cell from human fetal pancreas
1000102602.G1


title: Fetal_pancreas_cell_1803

description:
Single cell from human fetal pancreas
1000102701.G5

source_name: 21wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1804

description:
Single cell from human fetal pancreas
1000101903.E4


title: Fetal_pancreas_cell_1801

description:
Single cell from human fetal pancreas
1000101005.A4


title: Fetal_pancreas_cell_1818

description:
Single cell from human fetal pancreas
1000101903.D4


title: Fetal_pancreas_cell_1799

description:
Single cell from human fetal pancreas
1000102701.A4


title: Fetal_pancreas_cell_1819

description:
Single cell from human fetal pancreas
1000101301.B6


title: Fetal_pancreas_cell_1800

description:
Single cell from human fetal pancreas
1000101301.G6


title: Fetal_pancreas_cell_1794

description:
Single cell from human fetal pancreas
1000102702.C10


title: Fetal_pancreas_cell_1793

description:
Single cell from human fetal pancreas
1000102602.F5


title: Fetal_pancreas_cell_1795

description:
Single cell from human fetal pancreas
1000102702.B3

source_name: 21wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1796

description:
Single cell from human fetal pancreas
1000102602.C9


title: Fetal_pancreas_cell_1797

description:
Single cell from human fetal pancreas
1000102602.F3


title: Fetal_pancreas_cell_1798

description:
Single cell from human fetal pancreas
1000101803.H10


title: CDK8 analog-sensitive HCT116, IFNgamma, replicate 1

description:
HCT116_CDK8as_DMSO-IFN_1
Nascent RNA (PRO-seq) from HCT116 cells.
processed data file: TSS_counts.txt
processed data file: body_counts.txt

source_name: CDK8 analog-sensitive HCT116 cells

value: colorectal carcinoma

value: 10ng/mL IFNgamma + DMSO


title: Fetal_pancreas_cell_1792

description:
Single cell from human fetal pancreas
1000101301.A2


title: Fetal_pancreas_cell_1789

description:
Single cell from human fetal pancreas
1000102602.G4

source_name: 16wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1788

description:
Single cell from human fetal pancreas
1000101005.C6


title: Fetal_pancreas_cell_1786

description:
Single cell from human fetal pancreas
1000101803.E7

source_name: 22wks_fetal pancreas cell_undef


title: Fetal_pancreas_cell_1787

description:
Single cell from human fetal pancreas
1000102602.C10

source_name: 16wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1790

description:
Single cell from human fetal pancreas
1000101005.B5


title: Fetal_pancreas_cell_1784

description:
Single cell from human fetal pancreas
1000102601.D8


title: Fetal_pancreas_cell_1785

description:
Single cell from human fetal pancreas
1000102601.C9

source_name: 16wks_fetal pancreas cell_ductal


title: Fetal_pancreas_cell_1783

description:
Single cell from human fetal pancreas
1000102601.C7


title: Fetal_pancreas_cell_1781

description:
Single cell from human fetal pancreas
1000102701.D11


title: Fetal_pancreas_cell_1782

description:
Single cell from human fetal pancreas
1000102602.C3


title: Fetal_pancreas_cell_1779

description:
Single cell from human fetal pancreas
1000102701.B4


title: Fetal_pancreas_cell_1778

description:
Single cell from human fetal pancreas
1000101301.D10


title: Fetal_pancreas_cell_1774

description:
Single cell from human fetal pancreas
1000102601.B4


title: Fetal_pancreas_cell_1791

description:
Single cell from human fetal pancreas
1000101301.A11

source_name: 12wks_fetal pancreas cell_endothelial


title: Fetal_pancreas_cell_1776

description:
Single cell from human fetal pancreas
1000102701.C12


title: Fetal_pancreas_cell_1775

description:
Single cell from human fetal pancreas
1000101803.D12


title: Fetal_pancreas_cell_1770

description:
Single cell from human fetal pancreas
1000101005.G11

source_name: 22wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1772

description:
Single cell from human fetal pancreas
1000101005.H11


title: Fetal_pancreas_cell_1773

description:
Single cell from human fetal pancreas
1000101301.C5


title: Fetal_pancreas_cell_1771

description:
Single cell from human fetal pancreas
1000101903.D2

source_name: 13wks_fetal pancreas cell_delta


title: Fetal_pancreas_cell_1767

description:
Single cell from human fetal pancreas
1000101301.A1


title: Fetal_pancreas_cell_1769

description:
Single cell from human fetal pancreas
1000101301.C10


title: Fetal_pancreas_cell_1766

description:
Single cell from human fetal pancreas
1000101005.H10


title: Fetal_pancreas_cell_1763

description:
Single cell from human fetal pancreas
1000102701.G6


title: Fetal_pancreas_cell_1765

description:
Single cell from human fetal pancreas
1000102602.H4

source_name: 16wks_fetal pancreas cell_delta


title: Fetal_pancreas_cell_1764

description:
Single cell from human fetal pancreas
1000101903.F1

source_name: 13wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1768

description:
Single cell from human fetal pancreas
1000101005.H3

source_name: 22wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1780

description:
Single cell from human fetal pancreas
1000102602.B1

source_name: 16wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1760

description:
Single cell from human fetal pancreas
1000101005.H9

source_name: 22wks_fetal pancreas cell_endothelial


title: Fetal_pancreas_cell_1758

description:
Single cell from human fetal pancreas
1000102602.C1


title: Fetal_pancreas_cell_1762

description:
Single cell from human fetal pancreas
1000101301.A6

source_name: 12wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1761

description:
Single cell from human fetal pancreas
1000101005.H8


title: Fetal_pancreas_cell_1757

description:
Single cell from human fetal pancreas
1000101903.H6


title: Fetal_pancreas_cell_1755

description:
Single cell from human fetal pancreas
1000101301.H11

source_name: 12wks_fetal pancreas cell_undef


title: Fetal_pancreas_cell_1777

description:
Single cell from human fetal pancreas
1000102601.F12

source_name: 16wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1751

description:
Single cell from human fetal pancreas
1000101301.C7


title: Fetal_pancreas_cell_1754

description:
Single cell from human fetal pancreas
1000101903.C10

source_name: 13wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1752

description:
Single cell from human fetal pancreas
1000101903.B8

source_name: 13wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1753

description:
Single cell from human fetal pancreas
1000101903.A7


title: Fetal_pancreas_cell_1750

description:
Single cell from human fetal pancreas
1000101301.H5


title: Fetal_pancreas_cell_1748

description:
Single cell from human fetal pancreas
1000101005.A12


title: Fetal_pancreas_cell_1747

description:
Single cell from human fetal pancreas
1000101301.E5


title: Fetal_pancreas_cell_1749

description:
Single cell from human fetal pancreas
1000101005.G2


title: Fetal_pancreas_cell_1740

description:
Single cell from human fetal pancreas
1000101301.F5


title: Fetal_pancreas_cell_1739

description:
Single cell from human fetal pancreas
1000101005.A9


title: Fetal_pancreas_cell_1745

description:
Single cell from human fetal pancreas
1000102702.A11

source_name: 21wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1741

description:
Single cell from human fetal pancreas
1000101803.B3

source_name: 22wks_fetal pancreas cell_ductal


title: Fetal_pancreas_cell_1742

description:
Single cell from human fetal pancreas
1000102601.D3


title: Fetal_pancreas_cell_1743

description:
Single cell from human fetal pancreas
1000101903.A4

source_name: 13wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1759

description:
Single cell from human fetal pancreas
1000101903.H2


title: Fetal_pancreas_cell_1744

description:
Single cell from human fetal pancreas
1000102602.E12


title: Fetal_pancreas_cell_1737

description:
Single cell from human fetal pancreas
1000101803.G5


title: Fetal_pancreas_cell_1746

description:
Single cell from human fetal pancreas
1000102701.C10

source_name: 21wks_fetal pancreas cell_delta


title: Fetal_pancreas_cell_1756

description:
Single cell from human fetal pancreas
1000102602.A10

source_name: 16wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1736

description:
Single cell from human fetal pancreas
1000101005.E11


title: Fetal_pancreas_cell_1735

description:
Single cell from human fetal pancreas
1000101903.B7


title: Fetal_pancreas_cell_1738

description:
Single cell from human fetal pancreas
1000101803.A5

source_name: 22wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1734

description:
Single cell from human fetal pancreas
1000101903.C4


title: Fetal_pancreas_cell_1733

description:
Single cell from human fetal pancreas
1000101903.C9


title: Fetal_pancreas_cell_1730

description:
Single cell from human fetal pancreas
1000102602.A5


title: Fetal_pancreas_cell_1732

description:
Single cell from human fetal pancreas
1000101903.H8


title: Fetal_pancreas_cell_1727

description:
Single cell from human fetal pancreas
1000101903.A8


title: Fetal_pancreas_cell_1728

description:
Single cell from human fetal pancreas
1000101903.G3


title: Fetal_pancreas_cell_1724

description:
Single cell from human fetal pancreas
1000101005.C4


title: Fetal_pancreas_cell_1726

description:
Single cell from human fetal pancreas
1000102702.H3


title: Fetal_pancreas_cell_1725

description:
Single cell from human fetal pancreas
1000101301.E10


title: Fetal_pancreas_cell_1722

description:
Single cell from human fetal pancreas
1000101903.B12


title: Fetal_pancreas_cell_1723

description:
Single cell from human fetal pancreas
1000102601.E4


title: Fetal_pancreas_cell_1721

description:
Single cell from human fetal pancreas
1000102602.B9


title: Fetal_pancreas_cell_1719

description:
Single cell from human fetal pancreas
1000102602.F1


title: Fetal_pancreas_cell_1718

description:
Single cell from human fetal pancreas
1000101903.G10


title: Fetal_pancreas_cell_1717

description:
Single cell from human fetal pancreas
1000102602.F10

source_name: 16wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1715

description:
Single cell from human fetal pancreas
1000101005.H4


title: Fetal_pancreas_cell_1713

description:
Single cell from human fetal pancreas
1000101903.F3

source_name: 13wks_fetal pancreas cell_delta


title: Fetal_pancreas_cell_1716

description:
Single cell from human fetal pancreas
1000102602.F12


title: Fetal_pancreas_cell_1714

description:
Single cell from human fetal pancreas
1000101301.H10

source_name: 12wks_fetal pancreas cell_endothelial


title: Fetal_pancreas_cell_1712

description:
Single cell from human fetal pancreas
1000102701.A2

source_name: 21wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1711

description:
Single cell from human fetal pancreas
1000102601.F4


title: Fetal_pancreas_cell_1729

description:
Single cell from human fetal pancreas
1000102601.A5


title: Fetal_pancreas_cell_1710

description:
Single cell from human fetal pancreas
1000101005.B7


title: Fetal_pancreas_cell_1709

description:
Single cell from human fetal pancreas
1000101301.B11


title: Fetal_pancreas_cell_1731

description:
Single cell from human fetal pancreas
1000101005.A1

source_name: 22wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1720

description:
Single cell from human fetal pancreas
1000102702.E9


title: Fetal_pancreas_cell_1706

description:
Single cell from human fetal pancreas
1000102602.E8


title: Fetal_pancreas_cell_1699

description:
Single cell from human fetal pancreas
1000101005.E1


title: Fetal_pancreas_cell_1702

description:
Single cell from human fetal pancreas
1000102702.H1


title: Fetal_pancreas_cell_1701

description:
Single cell from human fetal pancreas
1000102602.H11

source_name: 16wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1705

description:
Single cell from human fetal pancreas
1000101301.D4

source_name: 12wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1700

description:
Single cell from human fetal pancreas
1000101903.B9


title: Fetal_pancreas_cell_1703

description:
Single cell from human fetal pancreas
1000102601.D5

source_name: 16wks_fetal pancreas cell_ductal


title: Fetal_pancreas_cell_1704

description:
Single cell from human fetal pancreas
1000102601.H4

source_name: 16wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1708

description:
Single cell from human fetal pancreas
1000102601.B7


title: Fetal_pancreas_cell_1707

description:
Single cell from human fetal pancreas
1000101005.C7


title: Fetal_pancreas_cell_1697

description:
Single cell from human fetal pancreas
1000101803.F2


title: Fetal_pancreas_cell_1686

description:
Single cell from human fetal pancreas
1000101803.A6


title: Fetal_pancreas_cell_1680

description:
Single cell from human fetal pancreas
1000101301.B2


title: Fetal_pancreas_cell_1694

description:
Single cell from human fetal pancreas
1000101803.A3


title: Fetal_pancreas_cell_1682

description:
Single cell from human fetal pancreas
1000102601.B11


title: Fetal_pancreas_cell_1698

description:
Single cell from human fetal pancreas
1000101301.E12


title: Fetal_pancreas_cell_1695

description:
Single cell from human fetal pancreas
1000101301.D11


title: Fetal_pancreas_cell_1696

description:
Single cell from human fetal pancreas
1000101803.A10


title: Fetal_pancreas_cell_1684

description:
Single cell from human fetal pancreas
1000101903.B10


title: Fetal_pancreas_cell_1689

description:
Single cell from human fetal pancreas
1000102601.H10


title: Fetal_pancreas_cell_1683

description:
Single cell from human fetal pancreas
1000101301.E8


title: Fetal_pancreas_cell_1688

description:
Single cell from human fetal pancreas
1000101903.E8


title: Fetal_pancreas_cell_1690

description:
Single cell from human fetal pancreas
1000101903.D1


title: Fetal_pancreas_cell_1687

description:
Single cell from human fetal pancreas
1000101301.B8


title: Fetal_pancreas_cell_1679

description:
Single cell from human fetal pancreas
1000101005.B6


title: Fetal_pancreas_cell_1691

description:
Single cell from human fetal pancreas
1000101803.B1


title: Fetal_pancreas_cell_1681

description:
Single cell from human fetal pancreas
1000101301.F7


title: Fetal_pancreas_cell_1685

description:
Single cell from human fetal pancreas
1000101005.C11


title: Fetal_pancreas_cell_1692

description:
Single cell from human fetal pancreas
1000101903.F2


title: Fetal_pancreas_cell_1693

description:
Single cell from human fetal pancreas
1000102601.B3


title: Fetal_pancreas_cell_1678

description:
Single cell from human fetal pancreas
1000101301.A5


title: Fetal_pancreas_cell_1675

description:
Single cell from human fetal pancreas
1000101903.H4


title: Fetal_pancreas_cell_1677

description:
Single cell from human fetal pancreas
1000101301.D6

source_name: 12wks_fetal pancreas cell_blood


title: Fetal_pancreas_cell_1661

description:
Single cell from human fetal pancreas
1000101301.G2


title: Fetal_pancreas_cell_1652

description:
Single cell from human fetal pancreas
1000101903.F11


title: Fetal_pancreas_cell_1660

description:
Single cell from human fetal pancreas
1000101005.G4


title: Fetal_pancreas_cell_1655

description:
Single cell from human fetal pancreas
1000102701.H8


title: Fetal_pancreas_cell_1664

description:
Single cell from human fetal pancreas
1000101903.A9

source_name: 13wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1653

description:
Single cell from human fetal pancreas
1000101903.G11


title: Fetal_pancreas_cell_1673

description:
Single cell from human fetal pancreas
1000101005.E10


title: Fetal_pancreas_cell_1665

description:
Single cell from human fetal pancreas
1000101803.B4


title: Fetal_pancreas_cell_1656

description:
Single cell from human fetal pancreas
1000101903.A10


title: Fetal_pancreas_cell_1662

description:
Single cell from human fetal pancreas
1000102602.A4


title: Fetal_pancreas_cell_1672

description:
Single cell from human fetal pancreas
1000102701.D10


title: Fetal_pancreas_cell_1654

description:
Single cell from human fetal pancreas
1000101903.B4

source_name: 13wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1663

description:
Single cell from human fetal pancreas
1000101301.C8


title: Fetal_pancreas_cell_1658

description:
Single cell from human fetal pancreas
1000101301.E1


title: Fetal_pancreas_cell_1671

description:
Single cell from human fetal pancreas
1000102602.C7


title: Fetal_pancreas_cell_1667

description:
Single cell from human fetal pancreas
1000101005.F9


title: Fetal_pancreas_cell_1670

description:
Single cell from human fetal pancreas
1000101903.F4


title: Fetal_pancreas_cell_1666

description:
Single cell from human fetal pancreas
1000102602.E6


title: Fetal_pancreas_cell_1676

description:
Single cell from human fetal pancreas
1000101301.G7


title: Fetal_pancreas_cell_1651

description:
Single cell from human fetal pancreas
1000101005.G5


title: Fetal_pancreas_cell_1648

description:
Single cell from human fetal pancreas
1000102602.B6


title: Fetal_pancreas_cell_1649

description:
Single cell from human fetal pancreas
1000102601.H5


title: Fetal_pancreas_cell_1657

description:
Single cell from human fetal pancreas
1000102601.H11


title: Fetal_pancreas_cell_1674

description:
Single cell from human fetal pancreas
1000102602.C5


title: Fetal_pancreas_cell_1659

description:
Single cell from human fetal pancreas
1000101803.F10


title: Fetal_pancreas_cell_1668

description:
Single cell from human fetal pancreas
1000101903.E11


title: Fetal_pancreas_cell_1669

description:
Single cell from human fetal pancreas
1000102702.B12

source_name: 21wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1647

description:
Single cell from human fetal pancreas
1000101903.G1


title: Fetal_pancreas_cell_1650

description:
Single cell from human fetal pancreas
1000101301.D7


title: Fetal_pancreas_cell_1646

description:
Single cell from human fetal pancreas
1000101005.G10


title: Fetal_pancreas_cell_1644

description:
Single cell from human fetal pancreas
1000101903.C5

source_name: 13wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1645

description:
Single cell from human fetal pancreas
1000101005.C1


title: Fetal_pancreas_cell_1643

description:
Single cell from human fetal pancreas
1000102602.A6


title: Fetal_pancreas_cell_1623

description:
Single cell from human fetal pancreas
1000101005.C10


title: Fetal_pancreas_cell_1621

description:
Single cell from human fetal pancreas
1000101903.D3


title: Fetal_pancreas_cell_1630

description:
Single cell from human fetal pancreas
1000102602.A3

source_name: 16wks_fetal pancreas cell_delta


title: Fetal_pancreas_cell_1632

description:
Single cell from human fetal pancreas
1000101301.A7


title: Fetal_pancreas_cell_1625

description:
Single cell from human fetal pancreas
1000101903.H10


title: Fetal_pancreas_cell_1626

description:
Single cell from human fetal pancreas
1000102701.A3


title: Fetal_pancreas_cell_1624

description:
Single cell from human fetal pancreas
1000101301.F6


title: Fetal_pancreas_cell_1628

description:
Single cell from human fetal pancreas
1000101903.F8


title: Fetal_pancreas_cell_1627

description:
Single cell from human fetal pancreas
1000102602.D7


title: Fetal_pancreas_cell_1622

description:
Single cell from human fetal pancreas
1000101301.B4


title: Fetal_pancreas_cell_1629

description:
Single cell from human fetal pancreas
1000101005.B3


title: Fetal_pancreas_cell_1631

description:
Single cell from human fetal pancreas
1000101301.H1


title: Fetal_pancreas_cell_1618

description:
Single cell from human fetal pancreas
1000101005.D8


title: Fetal_pancreas_cell_1619

description:
Single cell from human fetal pancreas
1000101005.D10


title: Fetal_pancreas_cell_1617

description:
Single cell from human fetal pancreas
1000101005.D1


title: Fetal_pancreas_cell_1639

description:
Single cell from human fetal pancreas
1000102602.A11


title: Fetal_pancreas_cell_1640

description:
Single cell from human fetal pancreas
1000102602.G5


title: Fetal_pancreas_cell_1633

description:
Single cell from human fetal pancreas
1000102602.H7

source_name: 16wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1641

description:
Single cell from human fetal pancreas
1000102701.E12


title: Fetal_pancreas_cell_1635

description:
Single cell from human fetal pancreas
1000101301.C9


title: Fetal_pancreas_cell_1637

description:
Single cell from human fetal pancreas
1000102601.D11


title: Fetal_pancreas_cell_1638

description:
Single cell from human fetal pancreas
1000101803.E9

source_name: 22wks_fetal pancreas cell_ductal


title: Fetal_pancreas_cell_1634

description:
Single cell from human fetal pancreas
1000101903.G4


title: Fetal_pancreas_cell_1642

description:
Single cell from human fetal pancreas
1000101005.F1


title: Fetal_pancreas_cell_1620

description:
Single cell from human fetal pancreas
1000101803.G10


title: Fetal_pancreas_cell_1636

description:
Single cell from human fetal pancreas
1000102602.E4


title: Fetal_pancreas_cell_1616

description:
Single cell from human fetal pancreas
1000101903.A2


title: Fetal_pancreas_cell_1615

description:
Single cell from human fetal pancreas
1000102701.B3

source_name: 21wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1614

description:
Single cell from human fetal pancreas
1000101803.G6


title: Fetal_pancreas_cell_1613

description:
Single cell from human fetal pancreas
1000101005.G6


title: Fetal_pancreas_cell_1612

description:
Single cell from human fetal pancreas
1000102701.E1

source_name: 21wks_fetal pancreas cell_ductal


title: Fetal_pancreas_cell_1599

description:
Single cell from human fetal pancreas
1000101005.E3


title: Fetal_pancreas_cell_1605

description:
Single cell from human fetal pancreas
1000102702.F2


title: Fetal_pancreas_cell_1604

description:
Single cell from human fetal pancreas
1000102702.C4

source_name: 21wks_fetal pancreas cell_delta


title: Fetal_pancreas_cell_1602

description:
Single cell from human fetal pancreas
1000102602.G11


title: Fetal_pancreas_cell_1597

description:
Single cell from human fetal pancreas
1000101803.G9


title: Fetal_pancreas_cell_1600

description:
Single cell from human fetal pancreas
1000101005.H6


title: Fetal_pancreas_cell_1609

description:
Single cell from human fetal pancreas
1000101301.H2

source_name: 12wks_fetal pancreas cell_endothelial


title: Fetal_pancreas_cell_1607

description:
Single cell from human fetal pancreas
1000101803.D10


title: Fetal_pancreas_cell_1595

description:
Single cell from human fetal pancreas
1000101301.D12


title: Fetal_pancreas_cell_1596

description:
Single cell from human fetal pancreas
1000102701.B6

source_name: 21wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1610

description:
Single cell from human fetal pancreas
1000101301.B1


title: Fetal_pancreas_cell_1601

description:
Single cell from human fetal pancreas
1000101301.E11


title: Fetal_pancreas_cell_1594

description:
Single cell from human fetal pancreas
1000102701.D4


title: Fetal_pancreas_cell_1592

description:
Single cell from human fetal pancreas
1000101903.B5


title: Fetal_pancreas_cell_1593

description:
Single cell from human fetal pancreas
1000102602.H9


title: Fetal_pancreas_cell_1598

description:
Single cell from human fetal pancreas
1000102601.C1


title: Fetal_pancreas_cell_1606

description:
Single cell from human fetal pancreas
1000101803.B8

source_name: 22wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1587

description:
Single cell from human fetal pancreas
1000102702.H2


title: Fetal_pancreas_cell_1591

description:
Single cell from human fetal pancreas
1000101301.E4


title: Fetal_pancreas_cell_1603

description:
Single cell from human fetal pancreas
1000101301.H8


title: Fetal_pancreas_cell_1590

description:
Single cell from human fetal pancreas
1000101005.A11

source_name: 22wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1589

description:
Single cell from human fetal pancreas
1000102701.B12


title: Fetal_pancreas_cell_1588

description:
Single cell from human fetal pancreas
1000101903.D9


title: Fetal_pancreas_cell_1585

description:
Single cell from human fetal pancreas
1000101301.D9

source_name: 12wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1586

description:
Single cell from human fetal pancreas
1000102702.G2


title: Fetal_pancreas_cell_1583

description:
Single cell from human fetal pancreas
1000102702.B6


title: Fetal_pancreas_cell_1584

description:
Single cell from human fetal pancreas
1000101301.B5

source_name: 12wks_fetal pancreas cell_undef


title: Fetal_pancreas_cell_1608

description:
Single cell from human fetal pancreas
1000102702.E7


title: Fetal_pancreas_cell_1611

description:
Single cell from human fetal pancreas
1000101903.C3


title: Fetal_pancreas_cell_1581

description:
Single cell from human fetal pancreas
1000102602.B3

source_name: 16wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1582

description:
Single cell from human fetal pancreas
1000102602.C2


title: Fetal_pancreas_cell_1579

description:
Single cell from human fetal pancreas
1000101903.E12


title: Fetal_pancreas_cell_1580

description:
Single cell from human fetal pancreas
1000101005.D11


title: Fetal_pancreas_cell_1578

description:
Single cell from human fetal pancreas
1000102701.A6


title: Fetal_pancreas_cell_1576

description:
Single cell from human fetal pancreas
1000101301.H6


title: Fetal_pancreas_cell_1575

description:
Single cell from human fetal pancreas
1000102602.G7


title: Fetal_pancreas_cell_1569

description:
Single cell from human fetal pancreas
1000101903.B1


title: Fetal_pancreas_cell_1572

description:
Single cell from human fetal pancreas
1000101803.D11


title: Fetal_pancreas_cell_1570

description:
Single cell from human fetal pancreas
1000102702.F4


title: Fetal_pancreas_cell_1567

description:
Single cell from human fetal pancreas
1000101301.D1


title: Fetal_pancreas_cell_1574

description:
Single cell from human fetal pancreas
1000102602.H6


title: Fetal_pancreas_cell_1571

description:
Single cell from human fetal pancreas
1000101301.C2


title: Fetal_pancreas_cell_1568

description:
Single cell from human fetal pancreas
1000101301.A4


title: Fetal_pancreas_cell_1565

description:
Single cell from human fetal pancreas
1000101301.F8


title: Fetal_pancreas_cell_1577

description:
Single cell from human fetal pancreas
1000101301.G5


title: Fetal_pancreas_cell_1566

description:
Single cell from human fetal pancreas
1000102602.C12


title: Fetal_pancreas_cell_1561

description:
Single cell from human fetal pancreas
1000101903.F9


title: Fetal_pancreas_cell_1555

description:
Single cell from human fetal pancreas
1000101903.A5


title: Fetal_pancreas_cell_1562

description:
Single cell from human fetal pancreas
1000101903.D12


title: Fetal_pancreas_cell_1559

description:
Single cell from human fetal pancreas
1000102702.D1


title: Fetal_pancreas_cell_1557

description:
Single cell from human fetal pancreas
1000102602.C4


title: Fetal_pancreas_cell_1560

description:
Single cell from human fetal pancreas
1000101301.E7


title: Fetal_pancreas_cell_1553

description:
Single cell from human fetal pancreas
1000101005.G1


title: Fetal_pancreas_cell_1554

description:
Single cell from human fetal pancreas
1000101301.C11


title: Fetal_pancreas_cell_1573

description:
Single cell from human fetal pancreas
1000101903.C8


title: Fetal_pancreas_cell_1552

description:
Single cell from human fetal pancreas
1000102602.F4


title: Fetal_pancreas_cell_1551

description:
Single cell from human fetal pancreas
1000101301.E3


title: Fetal_pancreas_cell_1550

description:
Single cell from human fetal pancreas
1000102602.D2


title: Fetal_pancreas_cell_1563

description:
Single cell from human fetal pancreas
1000102702.G12

source_name: 21wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1564

description:
Single cell from human fetal pancreas
1000101301.G1


title: Fetal_pancreas_cell_1549

description:
Single cell from human fetal pancreas
1000101803.G4


title: Fetal_pancreas_cell_1556

description:
Single cell from human fetal pancreas
1000101903.C12

source_name: 13wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1548

description:
Single cell from human fetal pancreas
1000102602.D4


title: Fetal_pancreas_cell_1558

description:
Single cell from human fetal pancreas
1000101903.A6


title: Fetal_pancreas_cell_1546

description:
Single cell from human fetal pancreas
1000101903.G12

source_name: 13wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1542

description:
Single cell from human fetal pancreas
1000101903.H5

source_name: 13wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1541

description:
Single cell from human fetal pancreas
1000101301.D8


title: Fetal_pancreas_cell_1539

description:
Single cell from human fetal pancreas
1000102601.E5

source_name: 16wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1544

description:
Single cell from human fetal pancreas
1000101903.D5


title: Fetal_pancreas_cell_1536

description:
Single cell from human fetal pancreas
1000102701.H4


title: Fetal_pancreas_cell_1538

description:
Single cell from human fetal pancreas
1000101005.H1


title: Fetal_pancreas_cell_1543

description:
Single cell from human fetal pancreas
1000101005.F12


title: Fetal_pancreas_cell_1537

description:
Single cell from human fetal pancreas
1000102702.D2

source_name: 21wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1545

description:
Single cell from human fetal pancreas
1000101903.H7


title: Fetal_pancreas_cell_1540

description:
Single cell from human fetal pancreas
1000101803.A4

source_name: 22wks_fetal pancreas cell_ductal


title: Fetal_pancreas_cell_1535

description:
Single cell from human fetal pancreas
1000101301.G10


title: Fetal_pancreas_cell_1534

description:
Single cell from human fetal pancreas
1000102601.D6

source_name: 16wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1531

description:
Single cell from human fetal pancreas
1000102602.F9


title: Fetal_pancreas_cell_1533

description:
Single cell from human fetal pancreas
1000101301.G3

source_name: 12wks_fetal pancreas cell_blood


title: Fetal_pancreas_cell_1532

description:
Single cell from human fetal pancreas
1000102602.A12

source_name: 16wks_fetal pancreas cell_delta


title: Fetal_pancreas_cell_1528

description:
Single cell from human fetal pancreas
1000101903.H3


title: Fetal_pancreas_cell_1529

description:
Single cell from human fetal pancreas
1000101903.G8


title: Fetal_pancreas_cell_1530

description:
Single cell from human fetal pancreas
1000102602.E7


title: Fetal_pancreas_cell_1527

description:
Single cell from human fetal pancreas
1000102602.D9

source_name: 16wks_fetal pancreas cell_undef


title: Fetal_pancreas_cell_1547

description:
Single cell from human fetal pancreas
1000102701.G12

source_name: 21wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1524

description:
Single cell from human fetal pancreas
1000101005.G12


title: Fetal_pancreas_cell_1525

description:
Single cell from human fetal pancreas
1000102601.H2


title: Fetal_pancreas_cell_1526

description:
Single cell from human fetal pancreas
1000101803.E6


title: Fetal_pancreas_cell_1523

description:
Single cell from human fetal pancreas
1000101005.H5


title: Fetal_pancreas_cell_1520

description:
Single cell from human fetal pancreas
1000101301.B9


title: Fetal_pancreas_cell_1516

description:
Single cell from human fetal pancreas
1000102602.H2

source_name: 16wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1517

description:
Single cell from human fetal pancreas
1000101903.G5


title: Fetal_pancreas_cell_1522

description:
Single cell from human fetal pancreas
1000101903.C6


title: Fetal_pancreas_cell_1514

description:
Single cell from human fetal pancreas
1000101903.E7


title: Fetal_pancreas_cell_1518

description:
Single cell from human fetal pancreas
1000101301.A12


title: Fetal_pancreas_cell_1515

description:
Single cell from human fetal pancreas
1000101301.G8


title: Fetal_pancreas_cell_1521

description:
Single cell from human fetal pancreas
1000101903.F5


title: Fetal_pancreas_cell_1512

description:
Single cell from human fetal pancreas
1000101903.H1


title: Fetal_pancreas_cell_1511

description:
Single cell from human fetal pancreas
1000101005.F2

source_name: 22wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1519

description:
Single cell from human fetal pancreas
1000102602.F11


title: Fetal_pancreas_cell_1504

description:
Single cell from human fetal pancreas
1000102702.A6

source_name: 21wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1510

description:
Single cell from human fetal pancreas
1000102702.H9


title: Fetal_pancreas_cell_1509

description:
Single cell from human fetal pancreas
1000102701.H2


title: Fetal_pancreas_cell_1505

description:
Single cell from human fetal pancreas
1000101903.E1


title: Fetal_pancreas_cell_1502

description:
Single cell from human fetal pancreas
1000101005.F7


title: Fetal_pancreas_cell_1507

description:
Single cell from human fetal pancreas
1000101903.F6


title: Fetal_pancreas_cell_1501

description:
Single cell from human fetal pancreas
1000101903.B2

source_name: 13wks_fetal pancreas cell_delta


title: Fetal_pancreas_cell_1506

description:
Single cell from human fetal pancreas
1000101005.D9


title: Fetal_pancreas_cell_1503

description:
Single cell from human fetal pancreas
1000101301.H9

source_name: 12wks_fetal pancreas cell_endothelial


title: Fetal_pancreas_cell_1500

description:
Single cell from human fetal pancreas
1000102602.D11

source_name: 16wks_fetal pancreas cell_endothelial


title: Fetal_pancreas_cell_1497

description:
Single cell from human fetal pancreas
1000101301.H7

source_name: 12wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1498

description:
Single cell from human fetal pancreas
1000101005.G7


title: Fetal_pancreas_cell_1496

description:
Single cell from human fetal pancreas
1000102602.G3


title: Fetal_pancreas_cell_1494

description:
Single cell from human fetal pancreas
1000101903.C2


title: Fetal_pancreas_cell_1493

description:
Single cell from human fetal pancreas
1000101005.A7


title: Fetal_pancreas_cell_1513

description:
Single cell from human fetal pancreas
1000101005.E5


title: Fetal_pancreas_cell_1508

description:
Single cell from human fetal pancreas
1000101301.C6


title: Fetal_pancreas_cell_1490

description:
Single cell from human fetal pancreas
1000101005.G9


title: Fetal_pancreas_cell_1486

description:
Single cell from human fetal pancreas
1000101903.G7


title: Fetal_pancreas_cell_1487

description:
Single cell from human fetal pancreas
1000101803.D8


title: Fetal_pancreas_cell_1488

description:
Single cell from human fetal pancreas
1000101803.D6


title: Fetal_pancreas_cell_1483

description:
Single cell from human fetal pancreas
1000101903.B3

source_name: 13wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1492

description:
Single cell from human fetal pancreas
1000102601.B1


title: Fetal_pancreas_cell_1481

description:
Single cell from human fetal pancreas
1000101903.G2

source_name: 13wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1482

description:
Single cell from human fetal pancreas
1000101903.A12


title: Fetal_pancreas_cell_1489

description:
Single cell from human fetal pancreas
1000102702.E12


title: Fetal_pancreas_cell_1485

description:
Single cell from human fetal pancreas
1000101903.E10


title: Fetal_pancreas_cell_1499

description:
Single cell from human fetal pancreas
1000101301.G12


title: Fetal_pancreas_cell_1478

description:
Single cell from human fetal pancreas
1000101803.A11


title: Fetal_pancreas_cell_1479

description:
Single cell from human fetal pancreas
1000101803.D4

source_name: 22wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1491

description:
Single cell from human fetal pancreas
1000101301.D5

source_name: 12wks_fetal pancreas cell_undef


title: Fetal_pancreas_cell_1473

description:
Single cell from human fetal pancreas
1000101301.G4


title: Fetal_pancreas_cell_1480

description:
Single cell from human fetal pancreas
1000102601.E7

source_name: 16wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1474

description:
Single cell from human fetal pancreas
1000101903.A3


title: Fetal_pancreas_cell_1495

description:
Single cell from human fetal pancreas
1000102601.C4

source_name: 16wks_fetal pancreas cell_ductal


title: Fetal_pancreas_cell_1484

description:
Single cell from human fetal pancreas
1000102601.C3


title: Fetal_pancreas_cell_1471

description:
Single cell from human fetal pancreas
1000101903.D11


title: Fetal_pancreas_cell_1472

description:
Single cell from human fetal pancreas
1000101005.F6


title: Fetal_pancreas_cell_1475

description:
Single cell from human fetal pancreas
1000102702.G1


title: Fetal_pancreas_cell_1477

description:
Single cell from human fetal pancreas
1000101301.A8


title: Fetal_pancreas_cell_1469

description:
Single cell from human fetal pancreas
1000102702.C9


title: Fetal_pancreas_cell_1470

description:
Single cell from human fetal pancreas
1000101903.D6

source_name: 13wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1468

description:
Single cell from human fetal pancreas
1000101803.F4


title: Fetal_pancreas_cell_1467

description:
Single cell from human fetal pancreas
1000101005.A8


title: Fetal_pancreas_cell_1466

description:
Single cell from human fetal pancreas
1000101803.A8

source_name: 22wks_fetal pancreas cell_ductal


title: Fetal_pancreas_cell_1465

description:
Single cell from human fetal pancreas
1000102602.D1

source_name: 16wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1464

description:
Single cell from human fetal pancreas
1000102601.A4

source_name: 16wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1462

description:
Single cell from human fetal pancreas
1000101005.F10

source_name: 22wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1461

description:
Single cell from human fetal pancreas
1000102702.E6


title: Fetal_pancreas_cell_1463

description:
Single cell from human fetal pancreas
1000102702.C6

source_name: 21wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1454

description:
Single cell from human fetal pancreas
1000101005.D4

source_name: 22wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1449

description:
Single cell from human fetal pancreas
1000101404.H5

source_name: 19wks_fetal pancreas cell_beta


title: Fetal_pancreas_cell_1451

description:
Single cell from human fetal pancreas
1000101301.F1


title: Fetal_pancreas_cell_1453

description:
Single cell from human fetal pancreas
1000102602.E2


title: Fetal_pancreas_cell_1459

description:
Single cell from human fetal pancreas
1000101005.D3


title: Fetal_pancreas_cell_1455

description:
Single cell from human fetal pancreas
1000102702.G8


title: Fetal_pancreas_cell_1456

description:
Single cell from human fetal pancreas
1000101903.G6


title: Fetal_pancreas_cell_1446

description:
Single cell from human fetal pancreas
1000101404.D1

source_name: 19wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1445

description:
Single cell from human fetal pancreas
1000101404.B2


title: Fetal_pancreas_cell_1458

description:
Single cell from human fetal pancreas
1000101005.D5


title: Fetal_pancreas_cell_1444

description:
Single cell from human fetal pancreas
1000101404.E4

source_name: 19wks_fetal pancreas cell_blood


title: Fetal_pancreas_cell_1450

description:
Single cell from human fetal pancreas
1000101404.G7


title: Fetal_pancreas_cell_1447

description:
Single cell from human fetal pancreas
1000101404.D2


title: Fetal_pancreas_cell_1457

description:
Single cell from human fetal pancreas
1000102701.B11

source_name: 21wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1443

description:
Single cell from human fetal pancreas
1000101404.E11


title: Fetal_pancreas_cell_1442

description:
Single cell from human fetal pancreas
1000101404.C11


title: Fetal_pancreas_cell_1440

description:
Single cell from human fetal pancreas
1000101404.A2

source_name: 19wks_fetal pancreas cell_endothelial


title: Fetal_pancreas_cell_1439

description:
Single cell from human fetal pancreas
1000101404.F12


title: Fetal_pancreas_cell_1441

description:
Single cell from human fetal pancreas
1000101404.H10


title: Fetal_pancreas_cell_1452

description:
Single cell from human fetal pancreas
1000101301.A10

source_name: 12wks_fetal pancreas cell_mesenchymal


title: Fetal_pancreas_cell_1437

description:
Single cell from human fetal pancreas
1000101404.B11


title: Fetal_pancreas_cell_1438

description:
Single cell from human fetal pancreas
1000101404.G2

source_name: 19wks_fetal pancreas cell_acinar


title: Fetal_pancreas_cell_1436

description:
Single cell from human fetal pancreas
1000101404.B1


title: Fetal_pancreas_cell_1460

description:
Single cell from human fetal pancreas
1000101301.B10


title: Fetal_pancreas_cell_1476

description:
Single cell from human fetal pancreas
1000102602.E10


title: Fetal_pancreas_cell_1435

description:
Single cell from human fetal pancreas
1000101404.D3


title: Fetal_pancreas_cell_1433

description:
Single cell from human fetal pancreas
1000101404.G11


title: Fetal_pancreas_cell_1429

description:
Single cell from human fetal pancreas
1000101404.C2


title: Fetal_pancreas_cell_1423

description:
Single cell from human fetal pancreas
1000101404.A10


title: Fetal_pancreas_cell_1431

description:
Single cell from human fetal pancreas
1000101404.C8


title: Fetal_pancreas_cell_1422

description:
Single cell from human fetal pancreas
1000101404.F4


title: Fetal_pancreas_cell_1424

description:
Single cell from human fetal pancreas
1000101404.H1


title: Fetal_pancreas_cell_1428

description:
Single cell from human fetal pancreas
1000101404.B6


title: Fetal_pancreas_cell_1426

description:
Single cell from human fetal pancreas
1000101404.F7


title: Fetal_pancreas_cell_1427

description:
Single cell from human fetal pancreas
1000101404.H9


title: Fetal_pancreas_cell_1419

description:
Single cell from human fetal pancreas
1000101404.E2


title: Fetal_pancreas_cell_1425

description:
Single cell from human fetal pancreas
1000101404.G12


title: Fetal_pancreas_cell_1420

description:
Single cell from human fetal pancreas
1000101404.F2


title: Fetal_pancreas_cell_1434

description:
Single cell from human fetal pancreas
1000101404.A4


title: Fetal_pancreas_cell_1418

description:
Single cell from human fetal pancreas
1000101404.E3

source_name: 19wks_fetal pancreas cell_alpha


title: Fetal_pancreas_cell_1421

description:
Single cell from human fetal pancreas
1000101404.F1


title: Fetal_pancreas_cell_1417

description:
Single cell from human fetal pancreas
1000101404.F8


title: Fetal_pancreas_cell_1416

description:
Single cell from human fetal pancreas
1000101404.F11


title: Fetal_pancreas_cell_1414

description:
Single cell from human fetal pancreas
1000101404.D11


title: Fetal_pancreas_cell_1415

description:
Single cell from human fetal pancreas
1000101404.G8


title: Fetal_pancreas_cell_1413

description:
Single cell from human fetal pancreas
1000101404.D9


title: Fetal_pancreas_cell_1409

description:
Single cell from human fetal pancreas
1000101404.F5


title: Fetal_pancreas_cell_1410

description:
Single cell from human fetal pancreas
1000101404.C5


title: Fetal_pancreas_cell_1411

description:
Single cell from human fetal pancreas
1000101404.D4


title: Fetal_pancreas_cell_1432

description:
Single cell from human fetal pancreas
1000101404.A5


title: Fetal_pancreas_cell_1408

description:
Single cell from human fetal pancreas
1000101404.H2


title: Fetal_pancreas_cell_1448

description:
Single cell from human fetal pancreas
1000101404.G9


title: Fetal_pancreas_cell_1407

description:
Single cell from human fetal pancreas
1000101404.H8


title: Fetal_pancreas_cell_1430

description:
Single cell from human fetal pancreas
1000101404.E12


title: Fetal_pancreas_cell_1405

description:
Single cell from human fetal pancreas
1000101404.A7


title: Fetal_pancreas_cell_1412

description:
Single cell from human fetal pancreas
1000101404.D6


title: Fetal_pancreas_cell_1403

description:
Single cell from human fetal pancreas
1000101404.C12


title: Fetal_pancreas_cell_1404

description:
Single cell from human fetal pancreas
1000101404.C10


title: Fetal_pancreas_cell_1396

description:
Single cell from human fetal pancreas
1000101404.F3


title: Fetal_pancreas_cell_1400

description:
Single cell from human fetal pancreas
1000101404.B12


title: Fetal_pancreas_cell_1402

description:
Single cell from human fetal pancreas
1000101404.E5


title: Fetal_pancreas_cell_1401

description:
Single cell from human fetal pancreas
1000101404.G1


title: Fetal_pancreas_cell_1397

description:
Single cell from human fetal pancreas
1000101404.G3