title: NT146_W5D3T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 146, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: systolic blood pressure (mm hg)

value: Tamusolin (enlarged prostate)

tag: microarray plate batch

value: XIII


title: NT021_W5D3T60_CR

status: Public on Jul 23 2019

type: RNA

city: Wageningen

first: Guido

last: Hooiveld

address: HELIX, Stippeneng 4

department: Div. Human Nutrition & Health

country: Netherlands

institute: Wageningen University

hyb_protocol: Samples were hybridized to Affymetrix GeneChip Human Gene 1.1 ST array plates (Santa Clara, CA) according to manufacturer's instructions.

scan_protocol: Arrays were scanned on an Affymetrix GeneTitan instrument (Affymetrix, Santa Clara, CA).

data_processing: Expression estimates were calculated applying the RMA algorithm in the Bioconductor library 'Oligo' (v1.30.0).

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: Peripheral blood mononuclear cells isolated from subject 021, W5 = before intervention, Day 3 = MMT, T60 = 60 minutes

label_protocol: One hundred nanogram of total RNA was used for whole transcript cDNA synthesis with the Whole-Transcript Sense Target Assay (Affymetrix, Santa Clara, CA, USA; P/N 900652).

growth_protocol: Included in this study were 72 healthy, overweight, Caucasian men and women, aged 50-65, with a BMI 25-35kg/m2, that were recruited from London (UK) and surroundings. Exclusion criteria included: weight change of ≥ 3kg in the preceding 3 months, current smokers, substance abuse, excess alcohol intake, pregnancy, diabetes, cardiovascular disease, cancer, gastrointestinal disease e.g. inflammatory bowel disease or irritable bowel syndrome, kidney disease, liver disease, pancreatitis, use of medications likely to interfere with energy metabolism, appetite regulation and hormonal balance (including: anti-inflammatory drugs or steroids, antibiotics, androgens, phenytoin, erythromycin or thyroid hormones), having any metallic or magnetic implants such as pacemakers, and claustrophobia. Before participating in the study, exach subject provided written informed consent. The study was approved by the Brent Ethics Committee (REC ref: 12/LO/0139) and was registered at clinicaltrials.gov as NCT01684917.

extract_protocol: RNA was isolated (RNeasy Micro kit, Qiagen, Venlo, the Netherlands), quantified (Nanodrop ND 1000, Nanodrop technologies, Wilmington, Delaware USA) and integrity was checked by an Agilent 2100 Bioanalyser with RNA 6000 microchips (Agilent Technologies, South Queensferry, UK). Samples were included for microarray analysis if the RNA integrity number (RIN) was > 7.

treatment_protocol: Intervention diets: Subjects were randomly assigned to either a 20% energy restriction (ER) diet  (n=40), or to a control diet (n=32) for 12 weeks. The ER diet consisted of 50% calories from carbohydrates, 35% from fat and 15% from protein, >18g of fibre, and at least five portions of fruit and vegetables a day. The control diet consisted of 40% calories from carbohydrates, 45% from fat and 15% from protein, and at least three portions of fruit and vegetables a day. Both groups completed a seven-day food diary the first and last week of the study. Diets were based on dietary advice. Compliance was assessed via a weekly telephone interview. Exercise was kept at the habitual level. Nutritional challenge tests: Before and after the intervention, all subjects were subjected to an oral glucose tolerance test (OGTT) and the next day to a mixed meal test (MMT). Peripheral blood mononuclear cells (PBMCs) were sampled at fasting, and postprandially during the OGTT at 30, 60, and 120 min and during MMT at 60, 120, 240, and 360 min. PBMCs were isolated from whole blood using BD Vacutainer Cell Preparation Tubes according to the manufacturer’s instructions.

value: MMT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: before intervention

tag: intervention group assignment (er/control)

value: ER

value: Male

tag: body height (m)

tag: bmi (kg/m2)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: Aspirin, Simvastatin, Penindopril, Amlodipine

value: III


title: Sample 164_genomic DNA from 201172220037_R08C01

type: genomic

city: New Haven

first: Ke

last: Xu

state: CT

country: USA

institute: Yale University

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium MethylationEPIC Beadchip using standard Illumina protocol

scan_protocol: Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting

data_processing:
GenomeStudio V2011.1
MethylatedSignal.txt: Unmethylated and methylated signal intensities; the signals of common probes between 450k and EPIC were provided.
MatrixProcessed.txt: ssNoob normalized Average Beta; the signals of common probes between 450k and EPIC were provided.

label: Cy5 and Cy3

molecule: genomic DNA

label_protocol: Standard Illumina Protocol

extract_protocol: DNAs were extracted from whole blood using the standard protocol.

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: NT120_W5D3T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 120, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: control

tag: age (yrs)

tag: gender

value: Female

tag: body weight (kg)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: systolic blood pressure (mm hg)

value: amlodopine

tag: microarray plate batch

value: XI


title: NT152_W5D3T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W5 = before intervention, Day 3 = MMT, T60 = 60 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: body height (m)

tag: bmi (kg/m2)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: XIV


title: Sample 165_genomic DNA from 201172520052_R01C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 170_genomic DNA from 201134840084_R01C01


title: NT103_W5D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 103, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: systolic blood pressure (mm hg)

value: simvastatin

tag: microarray plate batch

value: X


title: Sample 163_genomic DNA from 201172540032_R08C01

tag: age

value: Black


title: NT051_W5D3T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W5 = before intervention, Day 3 = MMT, T60 = 60 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: body height (m)

tag: bmi (kg/m2)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: Glaucoma eye drops

value: VI


title: Sample 160_genomic DNA from 201172550017_R08C01

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 161_genomic DNA from 201172550022_R08C01


title: NT059_W5D3T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 059, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: MMT

value: before intervention

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: systolic blood pressure (mm hg)

value: Ramipril

tag: microarray plate batch

value: VII


title: NT132_W5D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 132, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: ER

value: Male

tag: body height (m)

tag: bmi (kg/m2)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: XII


title: Sample 159_genomic DNA from 201172550016_R08C01

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: NT103_W18D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 103, W18 = after intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: after intervention

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: systolic blood pressure (mm hg)

tag: microarray plate batch


title: Sample 157_genomic DNA from 201172220001_R08C01

tag: age


title: Sample 158_genomic DNA from 201172220003_R08C01

tag: Sex


title: Sample 156_genomic DNA from 201172540046_R07C01

tag: race

value: Other


title: Sample 154_genomic DNA from 201172540034_R07C01

tag: hiv


title: Sample 155_genomic DNA from 201172520035_R07C01

tag: smoking


title: Sample 162_genomic DNA from 201172220024_R08C01

tag: artadherence


title: NT152_W5D3T240_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W5 = before intervention, Day 3 = MMT, T240 = 240 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: control

tag: body height (m)

tag: bmi (kg/m2)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: XIV


title: NT038_W5D3T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 038, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: systolic blood pressure (mm hg)

value: V


title: Sample 153_genomic DNA from 201172540032_R07C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 151_genomic DNA from 201172550022_R07C01


title: NT021_W5D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 021, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: body height (m)

tag: bmi (kg/m2)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: Aspirin, Simvastatin, Penindopril, Amlodipine

tag: microarray plate batch

value: III


title: Sample 150_genomic DNA from 201172550017_R07C01

tag: age


title: Sample 152_genomic DNA from 201172220024_R07C01

tag: Sex


title: Sample 149_genomic DNA from 201172550016_R07C01

tag: race


title: NT051_W5D3T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: age (yrs)

tag: gender

value: Female

tag: body weight (kg)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: systolic blood pressure (mm hg)

value: Glaucoma eye drops

value: VI


title: NT031_W5D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 031, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

value: MMT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: before intervention

tag: intervention group assignment (er/control)

tag: body height (m)

tag: bmi (kg/m2)

tag: waist hip ratio (ratio)

value: IV


title: NT070_W5D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 070, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

value: ER

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: Candesartan,cod liver oil, calcium, glucosamine

tag: microarray plate batch

value: VIII


title: NT080_W5D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 080, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: Male

value: IX


title: NT006_W5D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: age (yrs)

tag: gender

tag: body weight (kg)

value: I


title: NT152_W5D3T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

value: control

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: systolic blood pressure (mm hg)


title: NT132_W18D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 132, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: after intervention

tag: intervention group assignment (er/control)

value: simvastatin

value: XII


title: NT146_W18D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 146, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: body height (m)

tag: bmi (kg/m2)

tag: waist hip ratio (ratio)

value: Tamusolin (enlarged prostate)

value: XIII


title: NT120_W18D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 120, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

value: Female

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: amlodopine

value: XI


title: NT015_W5D3T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 015, W5 = before intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

value: MMT

value: before intervention

value: Lansoprazole, Tamsulosin

tag: microarray plate batch

value: II


title: Sample 148_genomic DNA from 201172220006_R07C01

tag: age

tag: Sex

value: Male

tag: race

value: Other

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: Sample 147_genomic DNA from 201172220003_R07C01

value: White


title: Sample 146_genomic DNA from 201172540046_R06C01


title: NT080_W18D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 080, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: type of challenge study (ogtt/mmt)

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: ER

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: systolic blood pressure (mm hg)

value: IX


title: NT080_W5D3T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 080, W5 = before intervention, Day 3 = MMT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: body height (m)

tag: bmi (kg/m2)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

tag: microarray plate batch


title: NT038_W18D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 038, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: after intervention

value: control

value: V


title: NT051_W18D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

value: Female

value: Glaucoma eye drops

value: VI


title: Sample 144_genomic DNA from 201172520035_R06C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT059_W18D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 059, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: subject

tag: % body fat

tag: body weight (kg)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

value: Ramipril

value: VII


title: Sample 143_genomic DNA from 201172540034_R06C01

tag: age


title: NT070_W18D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 070, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: Candesartan,cod liver oil, calcium, glucosamine

tag: microarray plate batch

value: VIII


title: NT021_W18D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 021, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: subject

tag: % body fat

value: Male

tag: body weight (kg)

tag: body height (m)

value: Aspirin, Simvastatin, Penindopril, Amlodipine

value: III


title: NT031_W18D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 031, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

value: IV


title: Sample 142_genomic DNA from 201172550022_R06C01

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: Sample 145_genomic DNA from 201172220037_R06C01

value: Black


title: Sample 139_genomic DNA from 201172220003_R06C01


title: NT015_W18D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 015, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: type of challenge study (ogtt/mmt)

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: after intervention

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: Lansoprazole, Tamsulosin

value: II


title: Sample 138_genomic DNA from 201172220001_R06C01

tag: age


title: Sample 140_genomic DNA from 201172220006_R06C01

tag: Sex


title: Sample 136_genomic DNA from 201172220037_R05C01

tag: race


title: Sample 141_genomic DNA from 201172550016_R06C01

tag: hiv


title: Sample 137_genomic DNA from 201172540046_R05C01

tag: smoking


title: Sample 135_genomic DNA from 201172520035_R05C01

tag: artadherence


title: Sample 134_genomic DNA from 201172540034_R05C01

tag: tissue


title: Sample 133_genomic DNA from 201172540032_R05C01


title: Sample 132_genomic DNA from 201172550022_R05C01

value: Other


title: NT152_W18D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: control

tag: body weight (kg)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: microarray plate batch

value: XIV


title: Sample 130_genomic DNA from 201172220006_R05C01

tag: age


title: Sample 129_genomic DNA from 201172220003_R05C01

tag: Sex


title: Sample 131_genomic DNA from 201172550016_R05C01

tag: race


title: NT070_W18D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 070, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: ER

tag: age (yrs)

tag: gender

value: Female

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use


title: NT051_W18D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: body weight (kg)

tag: body height (m)

tag: bmi (kg/m2)

value: Glaucoma eye drops

value: VI


title: Sample 127_genomic DNA from 201172540046_R04C01

tag: age

tag: Sex

value: Male

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT080_W18D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 080, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: microarray plate batch

value: IX


title: NT120_W18D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 120, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: amlodopine

value: XI


title: Sample 126_genomic DNA from 201172520035_R04C01

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: NT146_W18D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 146, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

value: Tamusolin (enlarged prostate)

tag: microarray plate batch

value: XIII


title: NT103_W18D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 103, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: after intervention

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: simvastatin

value: X


title: NT015_W18D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 015, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: control

value: Lansoprazole, Tamsulosin

value: II


title: NT031_W18D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 031, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

value: ER

tag: age (yrs)

tag: gender

value: Female

tag: bmi (kg/m2)

value: IV


title: NT038_W18D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 038, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

value: Male

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

value: V


title: NT152_W18D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: microarray plate batch

value: XIV


title: NT021_W18D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 021, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: type of challenge study (ogtt/mmt)

tag: body weight (kg)

tag: body height (m)

value: Aspirin, Simvastatin, Penindopril, Amlodipine

value: III


title: NT132_W18D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 132, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

value: OGTT

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: XII


title: Sample 124_genomic DNA from 201172220024_R04C01

tag: age

tag: Sex

tag: race

value: Other

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: NT006_W18D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W18 = after intervention, Day 2 = OGTT, T120 = 120 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: after intervention

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: medication/supplement/diet use

value: I


title: NT006_W18D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: microarray plate batch


title: NT059_W18D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 059, W18 = after intervention, Day 2 = OGTT, T60 = 60 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: control

value: Ramipril

value: VII


title: Sample 119_genomic DNA from 201172220037_R03C01

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 122_genomic DNA from 201172550016_R04C01


title: Sample 121_genomic DNA from 201172220003_R04C01

value: Black


title: NT132_W18D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 132, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: ER

tag: age (yrs)

tag: gender

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: medication/supplement/diet use

value: simvastatin


title: NT120_W18D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 120, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: Female

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: amlodopine

tag: microarray plate batch

value: XI


title: NT146_W18D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 146, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: Male

value: Tamusolin (enlarged prostate)

value: XIII


title: Sample 120_genomic DNA from 201172220001_R04C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT103_W18D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 103, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: medication/supplement/diet use

value: X


title: Sample 128_genomic DNA from 201172220001_R05C01

tag: age

value: whole blood sample


title: NT059_W18D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 059, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: after intervention

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: microarray plate batch


title: NT070_W18D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 070, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

value: Candesartan,cod liver oil, calcium, glucosamine

value: VIII


title: Sample 125_genomic DNA from 201172540034_R04C01

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 118_genomic DNA from 201172520035_R03C01

tag: age


title: Sample 117_genomic DNA from 201172540034_R03C01


title: Sample 116_genomic DNA from 201172540032_R03C01

value: Other


title: Sample 115_genomic DNA from 201172220024_R03C01

value: White


title: NT006_W18D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W18 = after intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: MMT

tag: gender

tag: body weight (kg)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: medication/supplement/diet use

value: I


title: NT080_W18D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 080, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: ER

tag: age (yrs)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: microarray plate batch

value: IX


title: NT021_W18D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 021, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: Aspirin, Simvastatin, Penindopril, Amlodipine

value: III


title: NT051_W18D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

value: control

tag: gender

value: Female

tag: body weight (kg)

tag: bmi (kg/m2)

value: Glaucoma eye drops

value: VI


title: Sample 114_genomic DNA from 201172550022_R03C01

tag: age

tag: Sex

value: Male

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT038_W18D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 038, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: V


title: Sample 113_genomic DNA from 201172550017_R03C01

tag: age

value: whole blood sample


title: NT015_W18D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 015, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: after intervention

tag: gender

tag: body weight (kg)

tag: bmi (kg/m2)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Lansoprazole, Tamsulosin

tag: microarray plate batch

value: II


title: NT146_W18D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 146, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

value: Tamusolin (enlarged prostate)

value: XIII


title: NT006_W18D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

value: ER

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

value: I


title: NT152_W18D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W18 = after intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: XIV


title: Sample 109_genomic DNA from 201172520035_R02C01

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 111_genomic DNA from 201172220001_R03C01


title: NT120_W18D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 120, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: control

tag: gender

tag: body weight (kg)

tag: bmi (kg/m2)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: amlodopine

tag: microarray plate batch

value: XI


title: NT132_W18D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 132, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: subject

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: simvastatin

value: XII


title: Sample 108_genomic DNA from 201172540034_R02C01

tag: age

tag: Sex

value: Male

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 107_genomic DNA from 201172540032_R02C01


title: Sample 112_genomic DNA from 201172550016_R03C01


title: Sample 106_genomic DNA from 201172220024_R02C01


title: Sample 105_genomic DNA from 201172550022_R02C01


title: Sample 104_genomic DNA from 201172550016_R02C01


title: Sample 103_genomic DNA from 201172220001_R02C01


title: Sample 101_genomic DNA from 201172550017_R01C01


title: Sample 102_genomic DNA from 201172540046_R01C01


title: Sample 110_genomic DNA from 201172540046_R02C01


title: NT051_W18D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: gender

value: Female

tag: body weight (kg)

tag: bmi (kg/m2)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Glaucoma eye drops

tag: microarray plate batch

value: VI


title: NT070_W18D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 070, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: subject

value: after intervention

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Candesartan,cod liver oil, calcium, glucosamine

value: VIII


title: Sample 99_genomic DNA from 201172220006_R01C01

tag: age

tag: Sex

tag: race

value: Black

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: Sample 98_genomic DNA from 201172550005_R08C01


title: NT059_W18D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 059, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: gender

tag: body weight (kg)

tag: bmi (kg/m2)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Ramipril

tag: microarray plate batch

value: VII


title: Sample 100_genomic DNA from 201172550016_R01C01

tag: age

value: White


title: NT080_W18D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 080, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: subject

tag: intervention group assignment (er/control)

value: ER

tag: age (yrs)

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: IX


title: NT103_W18D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 103, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: simvastatin

value: X


title: NT038_W18D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 038, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

value: control

tag: gender

value: Male

tag: body weight (kg)

tag: bmi (kg/m2)

tag: systolic blood pressure (mm hg)

value: V


title: NT031_W18D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 031, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: subject

value: OGTT

value: Female

tag: heart rate (beats/min)

tag: microarray plate batch

value: IV


title: NT132_W5D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 132, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

value: before intervention

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: body height (m)

value: XII


title: NT006_W18D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

value: after intervention

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

value: I


title: NT015_W18D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 015, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: % body fat

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Lansoprazole, Tamsulosin

value: II


title: NT146_W5D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 146, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: Tamusolin (enlarged prostate)

value: XIII


title: NT120_W5D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 120, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: gender

tag: body weight (kg)

tag: bmi (kg/m2)

value: amlodopine

value: XI


title: NT021_W18D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 021, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: subject

value: ER

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Aspirin, Simvastatin, Penindopril, Amlodipine

value: III


title: Sample 96_genomic DNA from 201194000183_R08C01

tag: age

tag: Sex

value: Male

tag: race

value: Other

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: NT152_W18D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W18 = after intervention, Day 2 = OGTT, T0 = Fasting sample

tag: % body fat

value: OGTT

tag: intervention group assignment (er/control)

value: control

tag: age (yrs)

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

tag: microarray plate batch

value: XIV


title: NT080_W5D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 080, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: before intervention

tag: gender

tag: body weight (kg)

tag: bmi (kg/m2)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: IX


title: Sample 94_genomic DNA from 201172550055_R08C01

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 95_genomic DNA from 201194010088_R08C01


title: NT103_W5D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 103, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: % body fat

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: simvastatin

tag: microarray plate batch

value: X


title: NT070_W5D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 070, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: gender

value: Female

tag: body weight (kg)

tag: bmi (kg/m2)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Candesartan,cod liver oil, calcium, glucosamine

value: VIII


title: Sample 92_genomic DNA from 201172520049_R08C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT051_W5D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: % body fat

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Glaucoma eye drops

tag: microarray plate batch

value: VI


title: Sample 91_genomic DNA from 201172220041_R07C01

tag: age


title: Sample 90_genomic DNA from 201172550005_R07C01

tag: Sex


title: Sample 97_genomic DNA from 201194000210_R08C01

tag: race


title: NT031_W5D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 031, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: ER

tag: gender

tag: body weight (kg)

tag: bmi (kg/m2)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: IV


title: Sample 88_genomic DNA from 201172520058_R07C01

value: Male

value: Other

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 87_genomic DNA from 201172220054_R07C01

value: whole blood sample


title: Sample 85_genomic DNA from 201172520050_R07C01


title: Sample 86_genomic DNA from 201172540053_R07C01


title: Sample 89_genomic DNA from 201194000183_R07C01


title: Sample 93_genomic DNA from 201172520050_R08C01


title: Sample 83_genomic DNA from 201172540041_R07C01


title: NT038_W5D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 038, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: % body fat

value: OGTT

tag: intervention group assignment (er/control)

value: control

tag: age (yrs)

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

tag: microarray plate batch

value: V


title: Sample 82_genomic DNA from 201172220041_R06C01

tag: age

tag: Sex

tag: race


title: NT015_W5D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 015, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: before intervention

tag: gender

tag: body weight (kg)

tag: bmi (kg/m2)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Lansoprazole, Tamsulosin

value: II


title: NT021_W5D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 021, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: % body fat

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: body height (m)

tag: hip circumference (cm)

tag: waist circumference (cm)

value: Aspirin, Simvastatin, Penindopril, Amlodipine

value: III


title: NT006_W5D2T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

value: Female

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

tag: microarray plate batch

value: I


title: NT152_W5D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

value: XIV


title: NT120_W5D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 120, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: moment of sampling / challenge test (before/after intervention)

tag: gender

tag: body weight (kg)

value: amlodopine

value: XI


title: Sample 81_genomic DNA from 201172550005_R06C01

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 123_genomic DNA from 201172550022_R04C01

value: Male


title: Sample 79_genomic DNA from 201194010088_R06C01


title: Sample 80_genomic DNA from 201194000210_R06C01


title: NT146_W5D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 146, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: % body fat

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Tamusolin (enlarged prostate)

value: XIII


title: NT080_W5D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 080, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: ER

tag: gender

tag: body weight (kg)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

tag: microarray plate batch

value: IX


title: NT132_W5D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 132, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: % body fat

value: before intervention

tag: intervention group assignment (er/control)

tag: age (yrs)

value: simvastatin

value: XII


title: Sample 84_genomic DNA from 201172520049_R07C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: NT103_W5D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 103, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: X


title: NT051_W5D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: % body fat

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: control

tag: age (yrs)

tag: gender

value: Female

tag: body weight (kg)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Glaucoma eye drops

tag: microarray plate batch

value: VI


title: Sample 78_genomic DNA from 201172550055_R06C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT059_W5D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 059, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Ramipril

value: VII


title: NT070_W5D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 070, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: % body fat

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Candesartan,cod liver oil, calcium, glucosamine

tag: microarray plate batch

value: VIII


title: NT059_W5D2T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 059, W5 = before intervention, Day 2 = OGTT, T120 = 120 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)


title: Sample 77_genomic DNA from 201172220054_R06C01

tag: age

tag: Sex

value: Male

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT021_W5D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 021, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: % body fat

value: OGTT

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: ER

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Aspirin, Simvastatin, Penindopril, Amlodipine

value: III


title: Sample 72_genomic DNA from 201194000183_R05C01

tag: age

value: Black


title: Sample 71_genomic DNA from 201194010088_R05C01

tag: Sex

value: Other

value: whole blood sample


title: Sample 70_genomic DNA from 201172220054_R05C01

tag: race


title: NT152_W5D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

value: before intervention

value: control

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

tag: microarray plate batch

value: XIV


title: NT015_W5D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 015, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: % body fat

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

value: Lansoprazole, Tamsulosin

value: II


title: NT006_W5D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

value: Female

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: I


title: Sample 75_genomic DNA from 201172520050_R06C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 76_genomic DNA from 201172540053_R06C01


title: Sample 69_genomic DNA from 201172540053_R05C01


title: Sample 74_genomic DNA from 201172520049_R06C01


title: Sample 73_genomic DNA from 201194000210_R05C01


title: Sample 68_genomic DNA from 201172520050_R05C01


title: Sample 66_genomic DNA from 201194000210_R04C01


title: NT146_W5D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 146, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Tamusolin (enlarged prostate)

tag: microarray plate batch

value: XIII


title: Sample 65_genomic DNA from 201194000183_R04C01

tag: age

value: Male

value: White


title: NT031_W5D2T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 031, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

value: OGTT

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: ER

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: IV


title: Sample 63_genomic DNA from 201172550055_R04C01

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT103_W5D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 103, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: simvastatin

tag: microarray plate batch

value: X


title: NT132_W5D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 132, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: XII


title: NT120_W5D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 120, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: before intervention

value: amlodopine

value: XI


title: Sample 62_genomic DNA from 201172220054_R04C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: Sample 67_genomic DNA from 201172220041_R04C01


title: Sample 61_genomic DNA from 201172540053_R04C01


title: NT070_W5D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 070, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Candesartan,cod liver oil, calcium, glucosamine

tag: microarray plate batch

value: VIII


title: Sample 59_genomic DNA from 201172220041_R03C01

tag: age


title: NT038_W5D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 038, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: control

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: V


title: Sample 58_genomic DNA from 201194010088_R03C01

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 60_genomic DNA from 201172520050_R04C01

value: Other


title: NT059_W5D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 059, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

value: Female

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Ramipril

tag: microarray plate batch

value: VII


title: NT051_W5D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: OGTT

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Glaucoma eye drops

value: VI


title: NT006_W5D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: ER

value: Statin

value: I


title: Sample 57_genomic DNA from 201172550055_R03C01

tag: age

tag: Sex

value: Male

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT021_W5D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 021, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: before intervention

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Aspirin, Simvastatin, Penindopril, Amlodipine

tag: microarray plate batch

value: III


title: NT031_W5D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 031, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: IV


title: NT038_W5D2T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 038, W5 = before intervention, Day 2 = OGTT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: control

value: V


title: NT152_W5D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: age (yrs)

tag: gender

tag: body weight (kg)

value: XIV


title: NT146_W5D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 146, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Tamusolin (enlarged prostate)

value: XIII


title: NT132_W5D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 132, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: simvastatin

tag: microarray plate batch

value: XII


title: Sample 56_genomic DNA from 201172220054_R03C01

tag: age

tag: Sex

tag: race

value: Black

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: Sample 55_genomic DNA from 201172520050_R03C01


title: Sample 54_genomic DNA from 201172220041_R02C01


title: Sample 52_genomic DNA from 201194010088_R02C01

value: Other


title: Sample 51_genomic DNA from 201172550055_R02C01

value: Male


title: Sample 49_genomic DNA from 201172550005_R01C01

value: White


title: Sample 50_genomic DNA from 201172520050_R02C01


title: Sample 48_genomic DNA from 201194000210_R01C01


title: Sample 46_genomic DNA from 201172520058_R01C01


title: Sample 45_genomic DNA from 201172540041_R01C01


title: Sample 44_genomic DNA from 201172550039_R08C01


title: NT120_W5D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 120, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: before intervention

tag: intervention group assignment (er/control)

value: Female

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: amlodopine

value: XI


title: NT103_W5D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 103, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: ER

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

tag: microarray plate batch

value: X


title: NT015_W5D2T30_Control

source_name: Peripheral blood mononuclear cells isolated from subject 015, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: control

value: Lansoprazole, Tamsulosin

value: II


title: Sample 47_genomic DNA from 201194010088_R01C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: NT070_W5D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 070, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

value: OGTT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: Candesartan,cod liver oil, calcium, glucosamine

value: VIII


title: NT051_W5D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 051, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Glaucoma eye drops

tag: microarray plate batch

value: VI


title: NT038_W5D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 038, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: V


title: Sample 42_genomic DNA from 201172220016_R08C01

tag: age

tag: Sex

value: Male

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: NT015_W5D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 015, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: before intervention

tag: age (yrs)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)


title: NT059_W5D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 059, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: gender

value: Female

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Ramipril

tag: microarray plate batch

value: VII


title: NT006_W5D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 006, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: ER

value: Statin

value: I


title: NT031_W5D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 031, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: age (yrs)

tag: bmi (kg/m2)

tag: hip circumference (cm)

value: IV


title: NT021_W5D2T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 021, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

value: Aspirin, Simvastatin, Penindopril, Amlodipine

value: III


title: NT131_W18D3T360_Control

source_name: Peripheral blood mononuclear cells isolated from subject 131, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

value: MMT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: after intervention

value: control

tag: heart rate (beats/min)

value: XII


title: NT152_W5D2T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 152, W5 = before intervention, Day 2 = OGTT, T0 = Fasting sample

value: OGTT

tag: intervention group assignment (er/control)

tag: gender

tag: body weight (kg)

value: XIV


title: NT078_W18D3T360_Control

source_name: Peripheral blood mononuclear cells isolated from subject 078, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: Lisinopril, Simvostatin, Aspirin, Inhaler (not used for 6 months)

value: IX


title: Sample 40_genomic DNA from 201172220008_R08C01

tag: age

tag: Sex

value: Male

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: Sample 43_genomic DNA from 201172220020_R08C01


title: NT145_W18D3T360_CR

source_name: Peripheral blood mononuclear cells isolated from subject 145, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: ER

tag: age (yrs)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: microarray plate batch

value: XIII


title: Sample 41_genomic DNA from 201172220013_R08C01

tag: age


title: Sample 38_genomic DNA from 201172530004_R08C01

tag: Sex

value: Other


title: NT118_W18D3T360_CR

source_name: Peripheral blood mononuclear cells isolated from subject 118, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: gender

value: Female

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: XI


title: Sample 39_genomic DNA from 201172530005_R08C01

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue


title: Sample 53_genomic DNA from 201194000183_R02C01


title: Sample 37_genomic DNA from 201172550039_R07C01


title: Sample 36_genomic DNA from 201172550038_R07C01

value: Black


title: NT057_W18D3T360_CR

source_name: Peripheral blood mononuclear cells isolated from subject 057, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: MMT

tag: age (yrs)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

value: glucosamine & garlic tablets daily

tag: microarray plate batch

value: VII


title: Sample 35_genomic DNA from 201172220023_R07C01

tag: age

tag: Sex


title: NT089_W18D3T360_Control

source_name: Peripheral blood mononuclear cells isolated from subject 089, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: after intervention

tag: intervention group assignment (er/control)

value: control

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: cod liver oil

value: X


title: NT035_W18D3T360_CR

source_name: Peripheral blood mononuclear cells isolated from subject 035, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: age (yrs)

tag: bmi (kg/m2)

value: V


title: NT080_W5D2T30_CR

source_name: Peripheral blood mononuclear cells isolated from subject 080, W5 = before intervention, Day 2 = OGTT, T30 = 30 minutes

value: OGTT

value: before intervention

value: Male

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: microarray plate batch

value: IX


title: NT046_W18D3T360_Control

source_name: Peripheral blood mononuclear cells isolated from subject 046, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: VI


title: NT020_W18D3T360_CR

source_name: Peripheral blood mononuclear cells isolated from subject 020, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

value: ER

tag: gender

tag: body weight (kg)

tag: body height (m)

value: III


title: NT027_W18D3T360_Control

source_name: Peripheral blood mononuclear cells isolated from subject 027, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: IV


title: NT067_W18D3T360_CR

source_name: Peripheral blood mononuclear cells isolated from subject 067, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: Female

value: multivitamin, star flower oil

value: VIII


title: Sample 33_genomic DNA from 201172220013_R07C01

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: Sample 34_genomic DNA from 201172220020_R07C01


title: Sample 31_genomic DNA from 201194000021_R06C01


title: Sample 30_genomic DNA from 201172220008_R06C01


title: Sample 28_genomic DNA from 201172530004_R06C01


title: Sample 32_genomic DNA from 201172220023_R06C01


title: NT013_W18D3T360_Control

source_name: Peripheral blood mononuclear cells isolated from subject 013, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

value: MMT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: after intervention

tag: intervention group assignment (er/control)

value: control

tag: age (yrs)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: microarray plate batch

value: II


title: Sample 27_genomic DNA from 201172550039_R05C01

tag: age


title: Sample 26_genomic DNA from 201172550038_R05C01

tag: Sex

value: Black


title: Sample 25_genomic DNA from 201172220023_R05C01

tag: race


title: Sample 23_genomic DNA from 201172550039_R04C01

tag: hiv


title: Sample 24_genomic DNA from 201172520001_R05C01

tag: smoking


title: Sample 22_genomic DNA from 201172220023_R04C01

value: Other

tag: artadherence


title: Sample 20_genomic DNA from 201172220016_R04C01

value: Male

tag: tissue


title: Sample 21_genomic DNA from 201194000021_R04C01


title: Sample 29_genomic DNA from 201172530005_R06C01


title: NT118_W18D3T240_CR

source_name: Peripheral blood mononuclear cells isolated from subject 118, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: XI


title: Sample 18_genomic DNA from 201172530005_R04C01

tag: age


title: NT089_W18D3T240_Control

source_name: Peripheral blood mononuclear cells isolated from subject 089, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

value: cod liver oil

tag: microarray plate batch

value: X


title: NT078_W18D3T240_Control

source_name: Peripheral blood mononuclear cells isolated from subject 078, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

value: Lisinopril, Simvostatin, Aspirin, Inhaler (not used for 6 months)

value: IX


title: NT002_W18D3T360_Control

source_name: Peripheral blood mononuclear cells isolated from subject 002, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

tag: gender

value: Female

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

value: Statin

value: I


title: NT145_W18D3T240_CR

source_name: Peripheral blood mononuclear cells isolated from subject 145, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: moment of sampling / challenge test (before/after intervention)

value: ER

tag: heart rate (beats/min)

value: XIII


title: NT131_W18D3T240_Control

source_name: Peripheral blood mononuclear cells isolated from subject 131, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

value: MMT

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: medication/supplement/diet use

value: XII


title: NT151_W18D3T360_CR

source_name: Peripheral blood mononuclear cells isolated from subject 151, W18 = after intervention, Day 3 = MMT, T360 = 360 minutes

value: after intervention

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

value: Simvastatin 40 mg dose, Citalopram 20mg dose-for 2 years on the same dose

value: XIV


title: NT057_W18D3T240_CR

source_name: Peripheral blood mononuclear cells isolated from subject 057, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

value: glucosamine & garlic tablets daily

tag: microarray plate batch

value: VII


title: NT035_W18D3T240_CR

source_name: Peripheral blood mononuclear cells isolated from subject 035, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: Male

value: V


title: NT002_W18D3T240_Control

source_name: Peripheral blood mononuclear cells isolated from subject 002, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: sampling time challenge test (h)

value: control

tag: gender

tag: body weight (kg)


title: NT020_W18D3T240_CR

source_name: Peripheral blood mononuclear cells isolated from subject 020, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: moment of sampling / challenge test (before/after intervention)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

value: III


title: NT151_W18D3T240_CR

source_name: Peripheral blood mononuclear cells isolated from subject 151, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: heart rate (beats/min)


title: NT067_W18D3T240_CR

source_name: Peripheral blood mononuclear cells isolated from subject 067, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: medication/supplement/diet use

value: multivitamin, star flower oil

value: VIII


title: NT046_W18D3T240_Control

source_name: Peripheral blood mononuclear cells isolated from subject 046, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

value: VI


title: NT027_W18D3T240_Control

source_name: Peripheral blood mononuclear cells isolated from subject 027, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: subject

tag: % body fat

tag: microarray plate batch

value: IV


title: Sample 15_genomic DNA from 201172220020_R03C01

tag: age

tag: Sex

tag: race

value: Black

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: Sample 16_genomic DNA from 201172550039_R03C01

value: White


title: Sample 19_genomic DNA from 201172220013_R04C01


title: Sample 13_genomic DNA from 201172530004_R03C01


title: Sample 17_genomic DNA from 201172520001_R04C01


title: Sample 12_genomic DNA from 201172550039_R02C01


title: NT131_W18D3T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 131, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: type of challenge study (ogtt/mmt)

value: MMT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: XII


title: NT089_W18D3T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 089, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: subject

tag: % body fat

value: after intervention

value: Female

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: cod liver oil

tag: microarray plate batch

value: X


title: NT013_W18D3T240_Control

source_name: Peripheral blood mononuclear cells isolated from subject 013, W18 = after intervention, Day 3 = MMT, T240 = 240 minutes

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: Male

value: II


title: NT078_W18D3T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 078, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: intervention group assignment (er/control)

value: control

tag: age (yrs)

tag: gender

value: Lisinopril, Simvostatin, Aspirin, Inhaler (not used for 6 months)

value: IX


title: NT118_W18D3T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 118, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

value: ER

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

value: XI


title: NT145_W18D3T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 145, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: subject

tag: % body fat

tag: heart rate (beats/min)

value: XIII


title: NT067_W18D3T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 067, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

value: multivitamin, star flower oil

value: VIII


title: NT057_W18D3T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 057, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: medication/supplement/diet use

value: glucosamine & garlic tablets daily

value: VII


title: Sample 10_genomic DNA from 201172220023_R02C01

tag: age

tag: Sex

tag: race

value: White

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: Sample 9_genomic DNA from 201172530005_R02C01


title: Sample 8_genomic DNA from 201172550039_R01C01


title: NT046_W18D3T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 046, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: type of challenge study (ogtt/mmt)

value: MMT

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: after intervention

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: microarray plate batch

value: VI


title: Sample 6_genomic DNA from 201172220020_R01C01

tag: age

value: Male

value: Other


title: Sample 4_genomic DNA from 201172220009_R01C01

tag: Sex


title: Sample 5_genomic DNA from 201172220016_R01C01

tag: race


title: Sample 14_genomic DNA from 201172220009_R03C01

value: Black

tag: hiv


title: Sample 3_genomic DNA from 201172220008_R01C01

tag: smoking


title: Sample 11_genomic DNA from 201172550038_R02C01

tag: artadherence


title: Sample 2_genomic DNA from 201172530005_R01C01

tag: tissue


title: NT035_W18D3T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 035, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: V


title: NT027_W18D3T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 027, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: control

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: microarray plate batch

value: IV


title: NT013_W18D3T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 013, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: II


title: NT020_W18D3T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 020, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

value: ER

value: Female

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

value: III


title: NT131_W18D3T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 131, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: XII


title: NT151_W18D3T120_CR

source_name: Peripheral blood mononuclear cells isolated from subject 151, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: medication/supplement/diet use

value: Simvastatin 40 mg dose, Citalopram 20mg dose-for 2 years on the same dose

value: XIV


title: Sample 64_genomic DNA from 201172520058_R04C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: tissue

value: whole blood sample


title: NT145_W18D3T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 145, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

value: MMT

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: diastolic blood pressure (mm hg)

tag: microarray plate batch

value: XIII


title: Sample 7_genomic DNA from 201194000021_R01C01

tag: age

value: White


title: si-CTRL_plus_Nutlin_Replicate2

type: SRA

city: Ann Arbor

first: Kin Fai

last: Au

state: MI

address: 100 Washtenaw Avenue

department: Department of Computational Medicine and Bioinformatics

institute: University of Michigan

library_source: transcriptomic

data_processing:
The quality of the sequencing reads generated was evaluated by FastQC (version 0.11.3) and the adaptor sequences were trimmed by cutadapt (version 1.8.1)
Processed reads were aligned to the hg19 reference human genome using HISAT2 (version 2.0.0-beta) with default parameters.
Employing the RefSeq annotation library, Cufflinks (version 2.2.1) with default parameters was used to quantify and normalise gene expression
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files including expression value (FPKM) for each gene

molecule: polyA RNA

growth_protocol: HCT 116 cell line derived from the American Type Culture Collection (ATCC) were cultured in Dulbecco's Modified Eagle Medium (DMEM; Gibco) supplemented with 10% (v/v) fetal bovine serum (FBS; Gibco), L-glutamine, and appropriate antibiotics. Cell cultures were maintained in a 5% CO2 humidified incubator at 37℃.

extract_protocol:
RNA was isolated using the AllPrep DNA/RNA Mini Kit (Qiagen 80204) from lysed cells, and mRNA was purified using the Dynabeads mRNA DIRECT Purification Kit (Invitrogen 61011) before converted to cDNA using the SuperScript II Reverse Transcriptase (Invitrogen 18064014).
Sequencing libraries were prepared using the TruSeq RNA Library Prep Kit v2 (Illumina RS-122-2001) and paired-end sequencing was conducted on the Illumina MiSeq platform according to the manufacturer’s instructions.

treatment_protocol: Reverse transfection of HCT 116 cells with siRNA targeting PPP1R13L (Dharmacon MU003815010002) or TP53 (Dharmacon MQ-003329-03-0002), or siGENOME Non-Targeting siRNA Pool #1 (Dharmacon D-001206-13-50) was performed using DharmaFECT 1 Transfection Reagent  (Dharmacon T-2001-02) following the manufacturer’s instructions. 3 days post-transfection, cells were treated with Nutlin ((±)-Nutlin-3; Cayman Chemical 10004372) overnight. 3.5 days post-transfection, cells were harvested for evaluation of protein depletion by Western blotting, and either RNA sequencing (RNA-seq).

tag: cell line

tag: treatment


title: NT118_W18D3T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 118, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: after intervention

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: XI


title: si-PPP1R13L_plus_si-TP53_Replicate2


title: si-PPP1R13L_Replicate2


title: si-CTRL_plus_Nutlin_Replicate1


title: si-PPP1R13L_plus_si-TP53_Replicate1


title: si-TP53_Replicate2


title: si-PPP1R13L_Replicate1


title: si-TP53_Replicate1


title: NT046_W18D3T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 046, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

value: Male

value: VI


title: si-CTRL_Replicate2

tag: cell line

value: si-CTRL


title: Sample 608_genomic DNA from 9741950076_R06C02

hyb_protocol: bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation 450K Beadchip using standard Illumina protocol

data_processing:
GenomeStudio V2011.1
MatrixProcessed.txt: Quantile normalized Average Beta
MethylatedSignal.txt: Unmethylated and methylated signal intensities

tag: age

tag: Sex

tag: race

value: Black

tag: hiv

tag: smoking

tag: artadherence

tag: gran

tag: nk

tag: bcell

tag: mono

tag: tissue

value: whole blood


title: Sample 1_genomic DNA from 201172530004_R01C01


title: NT027_W18D3T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 027, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: control

tag: body weight (kg)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

tag: microarray plate batch

value: IV


title: NT057_W18D3T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 057, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

tag: type of challenge study (ogtt/mmt)

tag: intervention group assignment (er/control)

value: ER

tag: age (yrs)

tag: gender

value: glucosamine & garlic tablets daily

value: VII


title: si-CTRL_Replicate1

tag: cell line

tag: treatment


title: NT002_W18D3T120_Control

source_name: Peripheral blood mononuclear cells isolated from subject 002, W18 = after intervention, Day 3 = MMT, T120 = 120 minutes

tag: subject

tag: % body fat

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: Female

tag: body weight (kg)

value: Statin

value: I


title: NT013_W18D3T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 013, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

value: MMT

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

value: II


title: NT020_W18D3T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 020, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

value: after intervention

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

tag: microarray plate batch

value: III


title: NT002_W18D3T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 002, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

tag: type of challenge study (ogtt/mmt)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender


title: Sample 606_genomic DNA from 9741950076_R04C01

tag: age

tag: Sex

value: Male

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: gran

tag: nk

tag: bcell

tag: mono

tag: tissue


title: Sample 605_genomic DNA from 9741950076_R03C02

value: White


title: NT078_W18D3T60_Control

source_name: Peripheral blood mononuclear cells isolated from subject 078, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

tag: subject

tag: % body fat

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: body weight (kg)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

tag: medication/supplement/diet use

value: Lisinopril, Simvostatin, Aspirin, Inhaler (not used for 6 months)

value: IX


title: NT151_W18D3T60_CR

source_name: Peripheral blood mononuclear cells isolated from subject 151, W18 = after intervention, Day 3 = MMT, T60 = 60 minutes

tag: type of challenge study (ogtt/mmt)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: gender

value: Simvastatin 40 mg dose, Citalopram 20mg dose-for 2 years on the same dose

tag: microarray plate batch

value: XIV


title: Sample 603_genomic DNA from 9741950076_R01C02

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: gran

tag: nk

tag: bcell

tag: mono

tag: tissue

value: whole blood


title: Sample 604_genomic DNA from 9741950076_R02C01


title: Sample 602_genomic DNA from 9741950050_R06C01


title: NT145_W18D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 145, W18 = after intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

value: ER

tag: body weight (kg)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: XIII


title: Sample 601_genomic DNA from 9741950050_R05C02

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: gran

tag: nk


title: Sample 607_genomic DNA from 9741950076_R04C02

tag: bcell

tag: mono

tag: tissue


title: Sample 596_genomic DNA from 9741950050_R03C01


title: Sample 595_genomic DNA from 9741950050_R02C02


title: Sample 594_genomic DNA from 9741950050_R02C01


title: NT078_W18D3T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 078, W18 = after intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

value: control

tag: age (yrs)

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: medication/supplement/diet use

tag: microarray plate batch


title: Sample 593_genomic DNA from 9741950050_R01C02

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: gran

tag: nk

tag: bcell


title: NT046_W18D3T0_Control

source_name: Peripheral blood mononuclear cells isolated from subject 046, W18 = after intervention, Day 3 = MMT, T0 = Fasting sample

tag: subject

tag: % body fat

tag: type of challenge study (ogtt/mmt)

tag: sampling time challenge test (h)

tag: moment of sampling / challenge test (before/after intervention)

tag: intervention group assignment (er/control)

tag: age (yrs)

tag: waist circumference (cm)

tag: waist hip ratio (ratio)

tag: diastolic blood pressure (mm hg)

tag: systolic blood pressure (mm hg)

tag: heart rate (beats/min)

value: VI


title: NT057_W18D3T0_CR

source_name: Peripheral blood mononuclear cells isolated from subject 057, W18 = after intervention, Day 3 = MMT, T0 = Fasting sample

tag: gender

tag: body weight (kg)

tag: body height (m)

tag: bmi (kg/m2)

tag: hip circumference (cm)

tag: medication/supplement/diet use

value: glucosamine & garlic tablets daily

tag: microarray plate batch

value: VII


title: Sample 600_genomic DNA from 9741950050_R05C01

tag: age

tag: Sex

tag: race

tag: hiv

tag: smoking

tag: artadherence

tag: gran

tag: nk

tag: bcell

tag: mono

tag: tissue