title: WBM, P1580-05-BS5961-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

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tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

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value: MS

tag: risk

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tag: pcscorebiopsy

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tag: qyconverted

tag: tc

value: Male

tag: dateimwgrelapse

tag: datedeath

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tag: datelastresponse

tag: responselast

value: SD

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

value: II

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, RE12-000061

status: Public on Aug 31 2019

type: RNA

city: La Jolla

first: Samuel

last: Danziger

state: CA

address: 10300 Campus Point Dr

country: USA

institute: Celgene

hyb_protocol: Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on human GeneChip. U133 plus 2.0 chips are washed and stained further in affymetrix fluidics station

scan_protocol: Chips were scanned using the HG-U133 Plus 2.0 v2.2 on a Affymetrix Genechip scanner

data_processing:
Gene-expression data were generated using the Affymetrix Human Genome U133 Plus 2.0 Array (Thermo Fisher Scientific) chips from WBM biopsies and CD138+-selected myeloma plasma cells. Risk status was assessed by ISS stage as defined by the International Myeloma Working Group (IMWG)25. CD138+ gene-expression data were used to generate the GEP-70 score55. A total of 1,360 Affymetrix Human Genome U133 Plus 2.0 gene-expression microarrays were derived from WBM biopsies from 461 samples from patients.
Unsupervised clustering of the top 10% most variable estimated non-tumor gene expression profiles (643 genes) across all time points was performed using the R package ConsensusClusterPlus (Bioconductor). Bayesian information criterion (BIC) was used to select the optimal number of clusters. The cluster centroids were calculated based on the median expression of each of the genes for the patient samples belonging to that cluster, and the sum of the squared distances was taken for the entire patient cluster. The residual sum squared distances across all clusters were used to calculate the BIC score, with the assumption of a Gaussian special case, as follows:  BIC = n × ln(RSS/n) + ln(n) × k, where n is the number of observations, RSS is the residual sum of squares, and k is the number of clusters. The maximum possible number of clusters was set to the square root of  the number of samples; thus, for the 867 patient samples, the optimal number of clusters determined by the algorithm was 13 out of a possible maximum of 29 clusters. Several of these microenvironment clusters were comprised of very few patient samples; therefore, we combined those micro-clusters defined as those containing less than a threshold of 5% of the samples.   For supervised machine learning survival analysis, cell-type estimates for cells with similar functions and gene expression signatures were added together to create 19 cell types for assessment.
The final signals correspond to probes that map to annotated genes as reported by Bioconductor's 'hgu133plus2.db' or BioMart repository ENSEMBL_MART_ENSEMBL with probes matching to 'LINC00597' added by hand.  Where multiple probes map to a particular gene, the median reported signal was used.

label: biotin

molecule: total RNA

organism: Homo sapiens

source_name: whole bone marrow

label_protocol: Biotinylated cRNA were prepared according to the standard Affymetrix protocol from200ng total RNA

extract_protocol: RNA extraction and isolation was performed with the AllPrep kit by Qiagen

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: Signal Genetics

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

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tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

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tag: point

value: Baseline

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value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

value: Y

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Confirmed NCR

tag: monthspfs

tag: albumin

tag: ldh

value: FALSE


title: WBM, RE12-000393

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

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tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

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tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Pre C2 VDTPACE

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

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tag: wmprob

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tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed CR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: III

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1581-05-BS6157-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

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tag: posttreatmentpretransplant

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tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr VDTPACE

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

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tag: celname

tag: datesamplernbx

tag: gender

tag: race

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tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Relapse

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1594-02-BS5871-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

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value: PR

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tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

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tag: fyprimary

tag: qyconverted

tag: tc

value: Female

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

value: I

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, RE12-000391

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: Signal Genetics

tag: pointgroup

value: FG-PostConsolidation

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Pre Maintenance 1

tag: cluster

tag: risk

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tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

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tag: datechip

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tag: celname

tag: datesamplernbx

tag: gender

tag: race

value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh

value: II


title: WBM, P1586-04-BS5995-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Male

value: Y

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed NCR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

value: FALSE

tag: hyperdiploidclinicalfish


title: WBM, P1502-02-BS5939-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

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tag: pcscorebiopsy

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tag: celname

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tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Confirmed CR

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1483-04-BS5948-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

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tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr Vel

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

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tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, RE12-000252

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: Signal Genetics

tag: pointgroup

value: FG-PostConsolidation

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

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tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

value: Female

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh

value: I


title: WBM, RE12-000253

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: CDE-PostTransplant

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Pre Consolidation 1

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Male

value: White / Caucasian

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, RE12-000060

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

value: Y

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh

value: FALSE


title: WBM, P1483-01-BS5775-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, RE12-000394

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Confirmed CR

tag: monthspfs

tag: albumin

tag: ldh

value: III


title: WBM, P1465-04-BS5829-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr Vel

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Progressive Disease_Unconfirmed

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1465-03-BS5756-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

value: Female

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1596-02-BS5862-U133Plus-2_2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Male

value: Black

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Progression

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: II

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1580-04-BS5745-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

value: Y

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: SD

tag: monthspfs

tag: albumin

tag: ldh

value: FALSE


title: WBM, RE12-000251

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: Signal Genetics

tag: pointgroup

value: FG-PostConsolidation

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

value: Pre Maintenance 1

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed CR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: I

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1492-02-BS5605-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

value: Female

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

value: TRUE

tag: albumin

tag: ldh


title: WBM, P1591-04-BS5742-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Black

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Progression

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: II

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P2175-01-BS5539-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

value: Y

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Progressive Disease

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1550-03-BS5597-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Male

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: III

tag: sampledatetime

value: FALSE

tag: hyperdiploidclinicalfish


title: WBM, P1571-04-BS5516-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Relapse

tag: monthspfs

tag: albumin

tag: ldh

value: I


title: WBM, P1571-03-BS5719-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr VDTPACE

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Female

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1463-02-BS5288-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Confirmed NCR

tag: monthspfs

tag: albumin

tag: ldh

value: II


title: WBM, P1445-02-BS5096-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: White / Caucasian

value: Y

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Stable

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1432-02-BS5482-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

value: Male

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Remission

tag: monthspfs

tag: albumin

tag: ldh

value: FALSE


title: WBM, P1434-03-BS4955-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed CR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: I

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1441-04-BS5083-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1441-06-BS5471-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr VDTPACE

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1446-02-BS4814-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Progression

tag: monthspfs

value: TRUE

tag: albumin

tag: ldh


title: WBM, P1341-05-BS4973-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: CDE-PostTransplant

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

value: Pre Transplant 2

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: II

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1453-04-BS5480-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr Vel

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

value: Female

tag: race

value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

value: Y

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1448-04-BS5055-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Male

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Progressive Disease

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: III

tag: sampledatetime

value: FALSE

tag: hyperdiploidclinicalfish


title: WBM, P1437-05-BS5052-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Confirmed CR

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1442-05-BS5289-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1452-02-BS5041-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr VDTPACE

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Complete Response

tag: monthspfs

tag: albumin

tag: ldh

value: II


title: WBM, RE12-000392

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: Signal Genetics

tag: pointgroup

value: CDE-PostTransplant

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Pre Transplant 2

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Female

value: White / Caucasian

value: Y

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: I

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1437-04-BS4828-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

value: Male

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh

value: FALSE


title: WBM, RE12-000396

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Possible Relapse

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1448-03-BS5168-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr Vel

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Progressive Disease

tag: monthspfs

tag: albumin

tag: ldh

value: III


title: WBM, P1407-02-BS4696-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Female

value: White / Caucasian

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed NCR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1453-03-BS4848-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

value: Y

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Progression

tag: monthspfs

tag: albumin

tag: ldh

value: II


title: WBM, P1424-01-BS4756-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed CR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: I

tag: sampledatetime

value: FALSE

tag: hyperdiploidclinicalfish


title: WBM, P1780-01-BS5094-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

value: Male

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Improvement

tag: monthspfs

value: TRUE

tag: albumin

tag: ldh


title: WBM, P1412-03-BS4957-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr VDTPACE

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Female

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1779-02-BS7783-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh

value: III


title: WBM, P1451-02-BS5042-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: HY

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Y

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Progression

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: MCF7_RNAseq [WTCHG_355565]

type: SRA

city: Oxford

first: Ping

last: Zhang

address: Roosevelt Drive

department: Ludwig Institute for Cancer Research

country: United Kingdom

institute: University of Oxford

library_source: transcriptomic

data_processing:
FASTQ files were converted to Binary-sequence Alignment Format (BAM) files using HISAT2 (v2.1.0) and indexed using Samtools (v1.3).
BAM files were imported into Perseus software (v1.6.0.2) and genome annotation was performed using the Human Fasta cDNA database (http://www.ensembl.org). Reads per kilo per million (RPKM) values were calculated by a normalization step dividing by the sum (Normalization → Divide), followed by dividing normalised values by gene length, multiplying by 10^9 and taking the log2 values
Genome_build: GRCh37 (hg19)
Supplementary_files_format_and_content: RPKM

source_name: MCF7 cells

growth_protocol: Commercially purchased MCF7 (ATCC Nr HTB-22) cells were cultured in DMEM medium (GIBCO) supplemented with 10% fetal calf serum (FCS; GIBCO), 100 U/ml penicillin (SIGMA) and 100 µg/ml streptomycin (SIGMA) and maintained at 37 °C in a humidified atmosphere at 5% CO2. 5x10^8 MCF7 cells were grown to ~90% confluency, harvested by centrifugation at 1500 rpm and resuspended in ice-cold PBS, centrifuged again and pellets kept at -20oC until analysis.

extract_protocol:
RNA was extracted from cell pellets using the RNeasy Mini Kit (QIAGEN) according the manufacturer’s instructions.
The cDNA library was prepared using a standardised protocol followed by paired end sequencing using a HiSeq4000 platform (Illumina) at the Oxford Genomics Centre (Wellcome Trust Centre for Human Genetics, Oxford, UK).

tag: cell line

tag: cell type

value: Breast cancer cell line


title: WBM, P1408-02-BS4661-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Relapse

tag: monthspfs

tag: albumin

tag: ldh

value: II


title: WBM, P1425-02-BS4851-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr Vel

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Male

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed NCR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: FALSE

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1459-01-BS4906-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

value: TRUE

tag: albumin

tag: ldh


title: L363_shPHF19_input

city: Durham

first: Greg

last: Wang

state: NC

address: 3 Genome Court

department: Duke Department of Pharmacology and Cancer Biology  and Duke Cancer Institute

institute: Duke University School of Medicine, and Department of Biochemistry and Biophysics, UNC at Chapel Hill (adjunct)

library_source: genomic

data_processing:
All reads were mapped to the human genome (hg19) using the BWA alignment software. Unique reads mapped to a single best-matching location with no more than two mismatches were kept, which were then subject to removal of reads generated by PCR- caused duplicates using the Picard and Samtools. We filter out reads with a mapping quality score < 20 for downstream analysis
Profiles of ChIP-Seq read densities were displayed in the Integrative Genomics Viewer (IGV, Broad Institute).
The MACS2 software was used for peak identification with data from input as controls and default parameters.
Genome_build: hg19

molecule: genomic DNA

source_name: L-363 cells

growth_protocol: L-363 cells were grown in RPMI1640 plus 10% FBS and 1% antibiotics.

extract_protocol:
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with specific antibodies against H3K27me3 (millipore 07-449)
Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit. Briefly, DNA was end-repaired using a combination of T4 DNA polymerase, E. coli DNA Pol I large fragment (Klenow polymerase) and T4 polynucleotide kinase. The blunt, phosphorylated ends were treated with Klenow fragment (32 to 52 exo minus) and dATP to yield a protruding 3- 'A' base for ligation of Illumina's adapters which have a single 'T' base overhang at the 3’ end. After adapter ligation DNA was PCR amplified with Illumina primers for up to 18 cycles and library fragments of ~250 bp (insert plus adaptor and PCR primer sequences) were band isolated from an agarose gel. The purified DNA was captured on an Illumina flow cell for cluster generation. Multiplexed ChIP-seq libraries were sequenced on the illuminia sequencer following the manufacturer's protocols.

treatment_protocol: For ChIP-seq experiments, L363 cells with the stable transduction of shRNA against PHF19 or empty vector (pLKO1-puro) were grown in regular medium and collected.

tag: tissue

value: multiple myeloma cell line

tag: cell line

tag: antibody used

value: n/a (input)

tag: treatment condition

value: PHF19 knockdown


title: L363_shEV_input

value: vehicle control


title: WBM, P1402-02-BS4590-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

value: Female

value: Black

value: Y

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed CR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: I

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1409-02-BS4560-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datesamplernbx

tag: gender

tag: race

value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh

value: II


title: WBM, P1350-02-BS4026-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

value: Male

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Remission

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

value: FALSE

tag: hyperdiploidclinicalfish


title: WBM, P1407-03-BS4794-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr Vel

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Confirmed NCR

tag: monthspfs

tag: albumin

tag: ldh

value: III


title: WBM, P1016-06-BS4806-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: HY

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

value: Female

value: Y

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: SD

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1408-06-BS4793-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datesamplernbx

tag: gender

tag: race

value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Relapse

tag: monthspfs

tag: albumin

tag: ldh


title: L363_shPHF19_H3K27me3

tag: tissue

value: multiple myeloma cell line

tag: cell line

tag: antibody used

value: H3K27me3 (millipore 07-449)

tag: treatment condition

value: PHF19 knockdown


title: WBM, P1384-03-BS4352-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

value: Male

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed CR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: II

tag: sampledatetime

value: FALSE

tag: hyperdiploidclinicalfish


title: WBM, P1384-04-BS4495-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr Vel

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

value: Y

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1354-04-BS4009-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

value: I

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1391-03-BS4390-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr VDTPACE

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datesamplernbx

tag: gender

tag: race

value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh

value: III


title: WBM, P1383-05-BS4427-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

value: Female

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Progressive Disease

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1380-01-BS4183-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datesamplernbx

tag: gender

value: Male

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1354-05-BS4182-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed CR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1425-01-BS4760-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Confirmed NCR

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1503-02-BS4359-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Progression

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

value: FALSE

tag: hyperdiploidclinicalfish


title: WBM, P1390-02-BS4066-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

value: Y

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Remission

tag: monthspfs

tag: albumin

tag: ldh

value: II


title: WBM, P1372-02-BS4047-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

value: White / Caucasian

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Relapse

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

value: I

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1383-04-BS4205-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datesamplernbx

tag: gender

value: Female

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Progressive Disease

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1405-02-BS4588-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

value: Male

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: SD

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: L363_shEV_H3K27me3

tag: tissue

value: multiple myeloma cell line

tag: cell line

tag: antibody used

value: H3K27me3 (millipore 07-449)

tag: treatment condition

value: vehicle control


title: WBM, P1391-02-BS4264-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

value: Y

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Confirmed CR

tag: monthspfs

tag: albumin

tag: ldh

value: III

value: FALSE


title: WBM, P1363-04-BS3933-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: White / Caucasian

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Possible Relapse

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

value: TRUE

tag: iss

value: I

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1380-00-BS4012-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1379-02-BS4030-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr Vel

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Male

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Onset Response

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1359-03-BS4096-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

value: Female

tag: race

value: Hispanic

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Remission

tag: monthspfs

tag: albumin

tag: ldh


title: WBM, P1389-03-BS4488-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr VDTPACE

tag: cluster

value: PR

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Y

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed CR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: II

tag: sampledatetime

value: FALSE

tag: hyperdiploidclinicalfish


title: WBM, P1363-05-BS4029-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: Extra Sample

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

value: White / Caucasian

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

value: Possible Relapse

tag: monthspfs

value: TRUE

tag: albumin

tag: ldh

value: I


title: WBM, P1367-02-BS3942-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: A-BeforeTreatment

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

value: RNBX-Random Biopsy

tag: sorting

tag: sampleprotocol

tag: point

value: Baseline

tag: cluster

value: MF

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

value: III

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1336-01-BS3696-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

value: MIRT

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

value: MS

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

value: Male

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh

value: VDTPACE (Vel / Dex / Thal / Cisplat / Adria / Cytoxan / Etop)


title: WBM, P1337-02-BS3790-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Y

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Confirmed CR

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish


title: WBM, P1336-05-BS3953-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

value: B-PostInduction

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

value: C1 48Hr VDTPACE

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: datapulled

tag: datechip

tag: protocolsample

tag: celname

tag: datesamplernbx

tag: gender

tag: race

tag: ageatsampledate

tag: numberoftransplants

tag: transplant

tag: ftprotocol

tag: dateenrolled

tag: dateebmtrelapse

tag: monthspfs

tag: albumin

tag: ldh

value: FALSE


title: WBM, P1359-00-BS4036-U133Plus-2

tag: datesample

tag: fnpatid

tag: datebasesample

tag: descprotocol

tag: ftprotocolbase

tag: batch

tag: pointgroup

tag: daysafterbasesample

tag: samexclude

tag: beforetreatment

tag: posttreatmentpretransplant

tag: posttransplantpreconsolidation

tag: posttransplantpremaintenance

tag: posttransplantnomaintenance

tag: postconsolidationpremaintenance

tag: postconsolidationnomaintenance

tag: poststartmaintenance

tag: eventid

tag: sampleID

tag: chiptype

tag: isexpress

tag: sampletype

tag: sorting

tag: sampleprotocol

tag: point

tag: cluster

tag: risk

tag: proindex

tag: nfkbscore

tag: polypc

tag: ifn

tag: cmyc

tag: wnt

tag: centrosomeindex

tag: pcscorebiopsy

tag: wmprob

tag: refchip

tag: fyprimary

tag: qyconverted

tag: tc

value: Female

value: Hispanic

tag: dateimwgrelapse

tag: datedeath

tag: datelastcontact

tag: datelastresponse

tag: responselast

value: Remission

tag: dateprogress

tag: censorforosdate

tag: monthsos

tag: censorforpfsdate

tag: iss

tag: sampledatetime

tag: hyperdiploidclinicalfish