title: K562_human_ori1

status: Public on May 01 2014

city: Paris

first: Jean-Charles

last: Cadoret

address: 15 rue hélène Brion

country: France

institute: CNRS/ Université de Paris

description: Short nascent strand DNA

data_processing:
Library strategy: SNS-Seq
Basecalling performed using software provided by Illumina
SNS-seq reads were aligned to the hg19 genome assembly using SOAP v2 which allows alignments with gaps tha parameters are : r=0 ; I=30 V=5
the peaks calling was perform with Scan v1 developped By Franck Picard (in submission)
Genome_build: hg19
Supplementary_files_format_and_content: Bed and contain the genomic coordinate of the peaks

source_name: bone marrow

growth_protocol: The base medium for this cell line is glutamax  Iscove's Modified Dulbecco's Medium (invitrogen) with  fetal bovine serum to a final concentration of 10% and 1 % penicillin and streptomycin (all from Invitrogen).

extract_protocol:
We realized isolation of Short Nascent Strands at replication origins (SNS) of asynchronous K562 human cells with the protocol previously described (Cadoret et al. PNAS 2008). For each sample, DNAzol was used to extract DNA of 100 millions asynchronous cells. Then DNA fragments of 2 kb were isolated after sucrose gradient separation. After lambda exonuclease digestion, the quality for each purified SNS preparation was tested, as previously described (Cadoret et al. PNAS 2008). Synthesis of second strands was performed with Klenow fragment exo- (Fermentas) and random primers (invitrogen) and then the catalyse of the formation of phosphodiester bond between two adjacent strand was performed by Taq DNA Ligase reaction. In order to be reproducible, we realized, for each biological sample, this synthesis with the same amount of background DNA calculated on the basis of background around the replication origin at the Myc locus. In order to be able to compare the replication origins between different cells, we gave the same amount of background DNA to the sequencing platform.
Libraries were prepared according to Illumina's instructions. The next generation sequencing of purified and sonicated SNS was realizedby the Genoscope, France, using the Illumina’s sequencing by synthesis technology. The sequencing library was clusterized and then hybridized with sequencing primers. The sequencing of 75 bp reads by single-end pairing was performed with  a Solexa/Illumina GA I genome analyser.  It generate 12,500,000 reads in average with 76% reads aligned with unique lovalization

treatment_protocol: No specific treatment

tag: morphology

value: lymphoblast

tag: culture properties

value: suspension


title: K562_human_ori2

type: SRA

description: Short nascent strand DNA

library_source: genomic

molecule: genomic DNA

organism: Homo sapiens

tag: cell type


title: K562_human_ori4

description: Short nascent strand DNA


title: K562 control RNA-seq

status: Public on Jul 01 2012

city: Stanford

first: Xun

last: Lan

state: CA

address: 318 Campus Dr. Room S240

department: Genetics

country: USA

institute: Stanford University

description: Illumina TruSeq RNA Sample Prep Kit

library_source: transcriptomic

data_processing:
Alignment: Sequence reads were obtained and mapped to the human (March, 2006) (hg18) genomes using the Bowtie. All reads mapping with two or fewer mismatches were retained.
Expression: FPKM value generated with Cufflinks software were used as gene expression value.

molecule: total RNA

source_name: K562 cells

growth_protocol: K562 cells were cultured in IMEM (Mediatech Inc) containing 10% FBS, 25 ïg/ml Gentamicin, 100 U/ml Penicillin, and 100 ïg/ml Streptomycin. After siRNA transfection, the cells were cultured with IMEM containing 10% FBS.

extract_protocol: The RNA libraries were prepared in accordance with the Illumina TruSeqâ¢ RNA Sample Prep Kit protocol. Briefly, mRNAs were fragmented at elevated temperature using divalent cations and transcribed into cDNA thereby generating a library of cDNA fragments. Barcoded RNA-Seq adapters provided with the Illumina kit were then ligated to the blunt ends of the cDNA fragments. The libraries of cDNA fragments were subjected to PCR amplification using universal primer sites present at the end of the ligated adapters. The libraries were then subjected to quality control steps such as verification of fragment size using the High Sensitivity DNA kit (Agilent Technologies) on an Agilent 2100 Bioanalyzer and concentration was determined by a KAPA Library Quantification Kit utilizing real-time PCR with standards suitable for Illumina sequencing libraries.

treatment_protocol: K562 cells (3 x 106) were transfected with 240 pmol of SMART pool siRNA targeting human GATA-1, GATA-2, or siGenome nontargeting siRNA pool (Dharmacon/ Fisher Scientific) with the Nucleofector II (Lonza). Cells were harvested 48 h post-transfection.

tag: cell line

tag: knockdown

value: control


title: PBMC.none.48h.XY.04

status: Public on Oct 27 2014

city: Madison

first: Heidi

last: Dvinge

state: WI

address: 440 Henry Mall

department: Biomolecular Chemistry

institute: UW-Madison

description: gender: XY

data_processing:
Illumina CASAVA software was used for basecalling and sample de-multiplexing.
Reads were mapped to the UCSC hg19 (NCBI GRCh37) human genome assembly using Bowtie v1.0.0 and RSEM v1.2.4. RSEM was modified to call Bowtie  with the -v 2 mapping strategy. RSEM was then invoked with the arguments --bowtie-m 100 --bowtie-chunkmbs 500 --calc-ci --output-genome- bam on the gene annotation file.
Genome_build: hg19
Supplementary_files_format_and_content: Text files with RSEM-based expression estimates for coding and non-coding RNA transcripts.

molecule: polyA RNA

source_name: Whole blood

extract_protocol:
Whole blood was extracted into purple-top BD Vacutainer vials with EDTA as anti-coagulent. PBMCs were isolated using a Ficoll gradient, and RNA was harvested using Trizol reagent and Qiagen RNA easy column.
The Illumina TruSeq RNA Sample Prep Kit was used with 2-4 ug of total RNA for the construction of sequencing libraries. The protocol was modified to select DNA fragments in the 100-400bp range using bead selection. Samples were multiplexed using Illumina barcodes to run four samples per sequencing lane.

value: PBMC

tag: treatment

value: stored at room temperature

tag: donor

tag: gender

value: Male

tag: time


title: K562_human_ori5

description: Short nascent strand DNA


title: K562_human_ori3

description: Short nascent strand DNA


title: colorectal cancer sample AUS2_122_p920

status: Public on Jan 06 2012

type: RNA

city: Oslo

first: Trude

middle: Holmeide

last: Ågesen

address: Ullernch. 70

department: Department of Cancer Prevention

country: Norway

institute: Oslo University Hospital

description:
RMA expression value derived from Expression Console software; gene-core analysis:
AUS2_122_p920_(HuEx-1_0-st-v2).GEOfiles.rma-gene-core.chp
AUS2_122_p920_(HuEx-1_0-st-v2).CEL

Definitions of the microsatellite instability phenotypes:
MSI-H: microsatellite instability high
MSI-L: microsatellite instability low
MSS: microsatellite stable

hyb_protocol: Samples were hybridized with GeneChip Human Exon 1.0 ST Arrays (Affymetrix)

scan_protocol: Array scanning was performed according to the manufacturer's instruction (Affymetrix)

data_processing: CEL files were analyzed in the Affymetrix® Expression Console software using the Robust Multichip Analysis (RMA) algorithm for background correction and quantile normalization (Affymetrix Expression Console™ Software Version 1.0 User Guide) and the HuEx-1_0-st-v2.r2 gene-core library file.

label: biotin

source_name: Colorectal cancer patient

label_protocol: Single-stranded cDNA was generated from the amplified cRNA with the WT cDNA Synthesis Kit (Affymetrix) and then fragmented and labeled with the WT Terminal Labeling Kit (Affymetrix).

extract_protocol: For the colorectal cancer samples, total RNA was isolated from <30 mg tissue biopsies using the AllPrep DNA/RNA Mini kit (Qiagen), according to the manufacturer's protocol. For the normal colon mucosa samples, total RNA was isolated from <100 mg tissue biopsies using the Ambion RiboPure kit (Life Technologies), according to the manufacturer's protocol.

tag: tissue

value: colorectal cancer biopsy

tag: tumor stage

value: III

tag: msi-status

value: MSS


title: colorectal cancer sample AUS2_052_p1597

description:
RMA expression value derived from Expression Console software; gene-core analysis:
AUS2_052_p1597_(HuEx-1_0-st-v2).GEOfiles.rma-gene-core.chp
AUS2_052_p1597_(HuEx-1_0-st-v2).CEL

Definitions of the microsatellite instability phenotypes:
MSI-H: microsatellite instability high
MSI-L: microsatellite instability low
MSS: microsatellite stable

value: II


title: colorectal cancer sample AUS2_182_p1478 [gene-level]

status: Public on May 19 2011

first: Anita

last: Sveen

address: P.O.Box 4953, Nydalen

department: Department of Molecular Oncology

institute: Institute for Cancer Research, Oslo University Hospital

data_processing: For analysis at the exon level, raw data were processed (using a custom-made cdf-file; HuEx-1_0-st-v2,coreR3,A20071112,EP.cdf) and analyzed for alternative splicing with the FIRMA algorithm (aroma.affymetrix). For gene-level analysis, raw data were processed with the RMA procedure using Expression Console (Affymetrix; gene-core analysis).


title: colorectal cancer sample AUS2_171_p1015 [gene-level]


title: colorectal cancer sample AUS2_123_p931 [gene-level]


title: colorectal cancer sample AUS2_158_p995 [gene-level]


title: colorectal cancer sample AUS2_175_p1471 [gene-level]


title: colorectal cancer sample AUS2_153_p993 [gene-level]


title: colorectal cancer sample AUS2_130_p935 [gene-level]


title: colorectal cancer sample AUS2_100_p668 [gene-level]


title: colorectal cancer sample AUS2_167_p1013 [gene-level]


title: colorectal cancer sample AUS2_185_p1577 [gene-level]


title: colorectal cancer sample AUS2_184_p1576 [gene-level]


title: colorectal cancer sample AUS2_186_p1482 [gene-level]


title: colorectal cancer sample AUS2_197_p1588 [gene-level]


title: colorectal cancer sample AUS2_129_p934 [gene-level]


title: colorectal cancer sample AUS2_187_p1579 [gene-level]


title: colorectal cancer sample AUS2_169_p1014 [gene-level]


title: colorectal cancer sample AUS2_140_p954 [gene-level]


title: colorectal cancer sample AUS2_145_p977 [gene-level]


title: singles-K562-rep1-well-179

status: Public on Jun 17 2015

city: Cambridge

first: Jason

middle: Daniel

last: Buenrostro

state: MA

address: 415 Main Street

institute: Broad Institute

description: processed data file: single-K562.peaks.bed

data_processing:
library strategy: Single-cell ATAC-seq (scATAC-seq)
Adapter sequences were trimmed from FASTQs using custom python scripts to enable mapping fragments with sequences containing adapters. Paired-end reads were aligned to hg19 or mm10 using BOWTIE2 using the parameter –X2000 allowing fragments of up to 2 kb to align. Duplicates were removed using PICARD tools. Reads were subsequently filtered for alignment quality of >Q30 and were required to be properly paired. Reads mapping to the mitochondria, unmapped contigs and chromosome Y were removed and not considered.
We used MACS2 to call all reported ATAC-seq peaks. MACS2 was used with the following parameters (--nomodel --nolambda --keep-dup all --call-summits). Peaks were filtered using the consensus excludable ENCODE blacklist (http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeMapability/) and a custom blacklist, designed to remove high-signal causing repeats and mitochondrial homologues. For all subsequent analysis we discarded peaks falling within these regions. Although we saw little effect on calculations of variability, in the case of K562 data, peaks were additionally filtered to exclude copy number amplifications. Using the filtered peak set, peak summits were extended +/-250 bps. The top 50,000 non-overlapping 500 bp summits are available here and were used for all downstream analysis.
Genome_build: hg19, mm10
Supplementary_files_format_and_content: Bam files across single-cells representing identical biological conditions have been merged. Reads pertaining to individual cells can be identified by their unique RGID tag corresponding to each assayed well. Bed files represent 500 bp peak summits as described above.

growth_protocol: K562 (ATCC) chronic myeloid leukemia cells were maintained in Iscove’s modified Dulbecco’s  medium (IMDM) containing 10% FBS (HyClone, Thermo Scientific) and 1% Penicillin Streptomycin (Pen/Strep).

extract_protocol:
Single cells were captured using the C1 Single-Cell Auto Prep IFC microfluidic chips. Cells were permeabilized and accessible fragments were captured using 20 µL of Tn5 transposition mix (1.5x TD buffer, 1.5 µL transposease (Nextera DNA Sample Prep Kit, Illumina), 1x C1 Loading Reagent with low salt (Fluidigm), and 0.15% NP40) at 30 minutes at 37°C.
In a 96-well plate, 10 µL of harvested libraries were amplified in 50 µL PCR for an additional 14 cycles (1.25 µM custom Nextera dual-index PCR primers (Supplementary Table 1) in 1x NEBnext High-Fidelity PCR Master Mix) using the following PCR conditions: 72°C for 5min; 98°C for 30 s; and thermocycling at 98°C for 10 s, 72°C for 30 s, and 72°C for 1 min. The PCR products were pooled creating a final volume of ~4.8 mL. The pooled library was purified on a single MinElute PCR purification column (Qiagen) yielding libraries at an approximate concentration of ~1 µM. Libraries were quantified using qPCR prior to sequencing.

value: chronic myeloid leukemia cells

tag: treated with

value: none (untreated)


title: colorectal cancer sample AUS2_098_p665 [gene-level]


title: colorectal cancer sample AUS2_097_p643 [gene-level]


title: colorectal cancer sample AUS2_009_p420

description:
RMA expression value derived from Expression Console software; gene-core analysis:
AUS2_009_p420_(HuEx-1_0-st-v2).GEOfiles.rma-gene-core.chp
AUS2_009_p420_(HuEx-1_0-st-v2).CEL

Definitions of the microsatellite instability phenotypes:
MSI-H: microsatellite instability high
MSI-L: microsatellite instability low
MSS: microsatellite stable

value: I


title: colorectal cancer sample AUS2_096_p652 [gene-level]


title: colorectal cancer sample AUS2_114_p1356 [gene-level]


title: colorectal cancer sample AUS2_094_p640 [gene-level]


title: colorectal cancer sample AUS2_200_p1591 [gene-level]


title: colorectal cancer sample AUS2_090_p646 [gene-level]


title: colorectal cancer sample AUS2_092_p648 [gene-level]


title: colorectal cancer sample AUS2_091_p647 [gene-level]

value: MSI-L


title: colorectal cancer sample AUS2_075_p595 [gene-level]


title: colorectal cancer sample AUS2_084_p622 [gene-level]


title: colorectal cancer sample AUS2_065_p551 [gene-level]


title: colorectal cancer sample AUS2_089_p645 [gene-level]


title: colorectal cancer sample AUS2_068_p564 [gene-level]


title: colorectal cancer sample AUS2_051_p1596 [gene-level]


title: colorectal cancer sample AUS2_048_p344 [gene-level]


title: colorectal cancer sample AUS2_058_p538 [gene-level]


title: colorectal cancer sample AUS2_050_p533 [gene-level]


title: colorectal cancer sample AUS2_054_p272 [gene-level]


title: colorectal cancer sample AUS2_055_p536 [gene-level]


title: colorectal cancer sample AUS2_027_p876 [gene-level]


title: colorectal cancer sample AUS2_042_p506 [gene-level]


title: colorectal cancer sample AUS2_044_p268 [gene-level]


title: colorectal cancer sample AUS2_024_p280 [gene-level]


title: colorectal cancer sample AUS2_038_p249 [gene-level]


title: colorectal cancer sample AUS2_041_p260 [gene-level]


title: colorectal cancer sample AUS2_026_p473 [gene-level]


title: colorectal cancer sample AUS2_070_p566 [gene-level]


title: colorectal cancer sample AUS2_036_p504 [gene-level]


title: colorectal cancer sample AUS2_018_p1355 [gene-level]


title: colorectal cancer sample AUS2_029_p476 [gene-level]


title: colorectal cancer sample AUS2_028_p256 [gene-level]


title: colorectal cancer sample AUS2_022_p452 [gene-level]


title: colorectal cancer sample AUS2_013_p874 [gene-level]


title: colorectal cancer sample AUS2_017_p296 [gene-level]


title: colorectal cancer sample AUS2_119_p927 [gene-level]


title: colorectal cancer sample AUS2_003_p348 [gene-level]


title: colorectal cancer sample AUS2_011_p423 [gene-level]


title: D4_non-transgenic

status: Public on Mar 07 2011

city: Hannover

first: Astrid

last: Rohrbeck

state: Niedersachsen

address: Carl-Neuberg-Straße 1

department: Department of Toxicology

country: Germany

institute: Medizinische Hochschule Hannover

description:
Lung samples were derived from SP-C/c-raf mice in the C57BL/6 background for at least five generations (aged 5 – 10 months); dysplastic and unaltered lung tissue were always isolated from the same dysplasia-bearing transgenic mouse (aged 5 – 7 months). Endogenous normal lung tissue was studied of non-transgenic mice (aged 7 – 10 months). The non-transgenic littermates (wild-type) served as control for transgenic effects.
Mice were sacrificed and the lung tissues were immediately frozen on dry ice and stored at -80°C until further analysis.

hyb_protocol: Following fragmentation, labeled cRNA of each sample was hybridized to Affymetrix GeneChip® Mouse Genome 430 2.0 Arrays covering over 34.000 genes and stained according to the manufacturer's instructions. The hybridization was performed for 16 hours at 60 rpm and 45°C in the GeneChip® Hybridization Oven 640 (Affymetrix). Washing and staining of the arrays were done on the Gene Chip® Fluidics Station 400 (Affymetrix) according to the manufacturers recommendation. The antibody signal amplification, washing and staining protocol (Affymetrix) was used to stain the arrays with streptavidin R-phycoerythrin (SAPE). To amplify staining, SAPE solution was added twice with a biotinylated anti-streptavidin antibody (Vector Laboratories, CA) staining step in between.

scan_protocol: The arrays were scanned using the Affymetrix GeneChip® Scanner 7G. Scanned image files was visually inspected for artefacts and then analyzed, each image being scaled to the same target value for comparison between chips. The GeneChip® Operating Software (GCOS) was used to control the fluidics station and the scanner, to capture probe array data and to analyze hybridization intensity data.

data_processing:
Array data was normalized using scaling or per-chip normalization to adjust the total or average intensity of each array to be approximately the same.
Microarray chips were analyzed by the GCOS (GeneChip Operating Software) from Affymetrix with the default settings except that the target signal was set to 500 and used to generate a microarray quality control and data report.
CEL files exported from GCOS were uploaded into ArrayTrack software (National Center for Toxicological Research, U.S. FDA, Jefferson, AR, USA (NCTR/FDA)) and normalized using Total Intensity Normalization after subtracting backgrounds for data management and analysis. ArrayTrack software includes some tools common to other bioinformatics software (e.g., ANOVA, T-test and SAM).To compare the normalized data from dysplasia, normal lung tissue from transgenic mouse, tumor cells and non-transgenic of different mice, we used the Significance Analysis of Microarrays (SAM) algorithm (ArrayTrack), which contains a sliding scale for false discovery rate (FDR) of significantly up- and down-regulated genes [70]. All data were permuted 100 cycles by using the two classes, unpaired data mode of the algorithm. As cut-off for significance an estimated FDR of 0.001 was chosen. Moreover, a cut-off for fold-change of differential expression of 2 was used.
Two clustering approaches were used to determine components of variation in the data in this study as follows.
A) Principal-component analysis (PCA) that was used to obtain a simplified visualization of entire datasets. PCA is a useful linear approach to obtain a simplified visualization of entire datasets, without losing experimental information (variance). PCA allowed the dimension of complex data to be reduced and highlights the most relevant features of a given dataset to be highlighted.
B) Hierarchical gene clustering (HCA) where the data points were organized in a phylogenetic tree in which the branch lengths represent the degree of similarity between the values.

label: Biotin

organism: Mus musculus

source_name: D4_non-transgenic mice, lung tissue

label_protocol: Total RNA (175ng) was used to generate biotin-labeled cRNA (10 µg) by means of Message Amp aRNA Premium Amplification Kit (Ambion, Austin, TX). Quality control of cRNA was performed using a bioanalyzer (Agilent 2001 Biosizing, Agilent Technologies).

extract_protocol:
From each frozen lung tissue 10-µm thick sections were prepared and transferred on polyethylene napthalate foil-covered slides (Zeiss, P.A.L.M. Microlaser Technologies GmbH, Bernried, Germany).
The sections were fixed in methanol / acetic acid and stained in hematoxylin. The desired cells were microdissected using the PALM MicroLaser systems (Zeiss, P.A.L.M. Microlaser Technologies GmbH, Bernried, Germany) and collected in an adhesive cap (Zeiss, P.A.L.M. Microlaser Technologies GmbH, Bernried, Germany). Microdissected cells were resuspended in a guanidine isothiocyanate-containing buffer (RLT buffer from RNeasy MikroKit, Qiagen, Santa Clarita, CA, USA) with 10 µl/ml β-mercaptoethanol to ensure isolation of intact RNA. Approximately an area of 6 x 106 µm2 were pooled from a specific layer of interest in the same animal and used for RNA extraction.
Following microdissection, total RNA-extraction was performed with the RNeasy Micro Kit (RNeasy MicroKit Qiagen, Santa Clarita, CA, USA) according to the manufacturer’s instruction. A standard quality control of the total RNA was performed using the Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, USA).

tag: non-transgenic mice, 7 month old, male


title: C4_transgenic but unaltered

hyb_protocol: Following fragmentation, labeled cRNA of each sample was hybridized to Affymetrix GeneChip® Mouse Genome 430 2.0 Arrays covering over 34.000 genes and stained according to the manufacturer's instructions. The hybridization was performed for 16 hours at 60 rpm and 45°C in the GeneChip® Hybridization Oven 640 (Affymetrix). Washing and staining of the arrays were done on the Gene Chip® Fluidics Station 400 (Affymetrix) according to the manufacturers recommendation. The antibody signal amplification, washing and staining protocol (Affymetrix) was used to stain the arrays with streptavidin R-phycoerythrin (SAPE). To amplify staining, SAPE solution was added twice with a biotinylated anti-streptavidin antibody (Vector Laboratories, CA) staining step in between

source_name: C4_transgenic but unaltered, lung tissue

tag: SPC-c-raf transgenic mice, 5 month old, male, unaltered


title: B1_dysplasia

source_name: B1_dysplasia, lung tissue

tag: SPC-c-raf transgenic mice, 6 month old, male, dysplasia


title: C3_transgenic but unaltered

source_name: C3_transgenic but unaltered, lung tissue

tag: SPC-c-raf transgenic mice, 5 month old, female, unaltered


title: D3_non-transgenic

source_name: D3_non-transgenic mice, lung tissue

tag: non-transgenic mice, 7 month old, female


title: B4_dysplasia

source_name: B4_dysplasia, lung tissue

tag: SPC-c-raf transgenic mice, 5 month old, male, dysplasia


title: D5_non-transgenic

source_name: D5_non-transgenic mice, lung tissue


source_name: A2 corrected_C2_transgenic but unaltered, lung tissue

tag: spc-c-raf transgenic mice, age

value: 6 month old, Gender:male, Tissue:tumor


title: D2_non-transgenic

source_name: D2_non-transgenic mice, lung tissue


title: C1_transgenic but unaltered

source_name: C1_transgenic but unaltered, lung tissue

tag: SPC-c-raf transgenic mice, 6 month old, male, unaltered


title: B5_dysplasia

source_name: B5_dysplasia, lung tissue


title: Normal sinus mucosa tissue (SMOI-normal-7UP)

status: Public on Feb 08 2008

city: Binghamton

first: Eric

middle: P

last: Hoffman

state: NY

address: PO Box 6000

department: Pharmaceutical Sciences

institute: Binghamton University - SUNY

description: Normal sinus mucosa tissue

hyb_protocol: standard Affymetrix procedures

scan_protocol: standard Affymetrix procedures

data_processing: Affymetrix STATISTICAL_ALGORITHM_TYPE

source_name: Sinus mucosa

label_protocol: standard Affymetrix procedures

extract_protocol: standard Affymetrix procedures

tag: disease state:normal


title: B3_dysplasia

source_name: B3_dysplasia, lung tissue

tag: SPC-c-raf transgenic mice, 5 month old, female, dysplasia


title: D1_non-transgenic

source_name: D1_non-transgenic mice, lung tissue


title: Sinus mucosa tissue from patient with chronic rhinosinusitis (SMOI-CRS-8UP)

description: Sinus mucosa tissue from patient with CRS

tag: disease state:CRS


title: Normal sinus mucosa tissue (SMOI-normal-4UP)

description: Normal sinus mucosa tissue


title: B2_dysplasia

source_name: B2_dysplasia, lung tissue


title: C5_transgenic but unaltered

source_name: C5_transgenic but unaltered, lung tissue


title: Normal sinus mucosa tissue (SMOI-normal-5UP)

description: Normal sinus mucosa tissue


title: Sinus mucosa tissue from patient with chronic rhinosinusitis (SMOI-CRS-3UP)


title: Sinus mucosa tissue from cystic fibrosis-patient with chronic rhinosinusitis (SMOI-CF-6UP)

description: Sinus mucosa tissue from CF-patient with CRS

source_name: CNMC Online Sample Type

tag: disease state:CF


title: Normal sinus mucosa tissue (SMOI-normal-3UP)

description: Normal sinus mucosa tissue


title: Normal sinus mucosa tissue (SMOI-normal-8UP)

description: Normal sinus mucosa tissue


title: Sinus mucosa tissue from patient with chronic rhinosinusitis (SMOI-CRS-10UP)


title: Sinus mucosa tissue from patient with chronic rhinosinusitis (SMOI-CRS-9UP)


title: Normal sinus mucosa tissue (SMOI-normal-9UP)

description: Normal sinus mucosa tissue


title: Sinus mucosa tissue from patient with chronic rhinosinusitis (SMOI-CRS-7UP)


title: Sinus mucosa tissue from cystic fibrosis-patient with chronic rhinosinusitis (SMOI-CF-3UP)


title: Normal sinus mucosa tissue (SMOI-normal-1UP)

description: Normal sinus mucosa tissue


title: Sinus mucosa tissue from patient with chronic rhinosinusitis (SMOI-CRS-6UP)


title: Sinus mucosa tissue from patient with chronic rhinosinusitis (SMOI-CRS-2UP)


title: Normal sinus mucosa tissue (SMOI-normal-6UP)

description: Normal sinus mucosa tissue


title: Sinus mucosa tissue from cystic fibrosis-patient with chronic rhinosinusitis (SMOI-CF-5UP)


title: Sinus mucosa tissue from patient with chronic rhinosinusitis (SMOI-CRS-1UP)


title: Normal sinus mucosa tissue (SMOI-normal-2UP)

description: Normal sinus mucosa tissue


title: Sinus mucosa tissue from the cystic fibrosis patient (SMOI-CF-1UP)

description: Sinus mucosa tissue (polyp) from the CF patient


title: Sinus mucosa tissue from patient with chronic rhinosinusitis (SMOI-CRS-5UP)


title: Sinus mucosa tissue from cystic fibrosis-patient with chronic rhinosinusitis (SMOI-CF-2UP)


title: RMA-TH2_24h-2MP-s2

status: Public on Feb 02 2008

description: TH2 cells were negatively isolated from exsanguinated mouse blood. RNA was extracted amplified and amplified samples from several mice were combined to make one sample

source_name: Murine peripheral blood cells

tag: cell type:TH2; time of collection:24 hour;


title: RMA-TH1_48h-4MP-s2

tag: cell type:TH1; time of collection:48 hour;


title: RMA-TH1_0h-2MP-s2

description: TH1 cells were negatively isolated from exsanguinated mouse blood. RNA was extracted amplified and amplified samples from several mice were combined to make one sample

tag: cell type:TH1; time of collection:0 hour;


title: RMA-Plt_24h-2MP-s2

description: Platelets cells were negatively isolated from exsanguinated mouse blood. RNA was extracted amplified and amplified samples from several mice were combined to make one sample

tag: cell type:Platelets; time of collection:24 hour;


title: RMA-Plt_0h-2MP-s2

tag: cell type:Platelets; time of collection:0 hour;


title: Sinus mucosa tissue from cystic fibrosis-patient with chronic rhinosinusitis (SMOI-CF-4UP)


title: RMA-TH1_0h-1MP-s2

scan_protocol: standard Affymetrix procedures standard Affymetrix procedures


title: RMA-Plt_48h-4MP-s2

tag: cell type:Platelets; time of collection:48 hour;


title: RMA-TH2_48h-4MP-s2

tag: cell type:TH2; time of collection:48 hour;


title: RMA-TH1_48h-1MP-s2


title: RMA-TH2_0h-1MP-s2

tag: cell type:TH2; time of collection:0 hour;


title: AGEI-0h_ARDS9-1UA

description: Septic individual ARDS9 at 0h

source_name: Human Blood Cells

tag: time:0h; Septic progress:ARDS9;


title: RMA-TH2_48h-1MP-s2


title: RMA-TH1_24h-1MP-s2

tag: cell type:TH1; time of collection:24 hour;


title: RMA-TH2_24h-1MP-s2


title: RMA-Plt_24h-1MP-s2


title: RAL-CtrPlate_0h-1aUAc-s2

description: Platelets from control individual at 0h.

tag: hour:0 hour; cell type:Platelets;


title: AGEI-72h_ARDS20-1UA

description: Septic individual ARDS20 at 72h

tag: time:72h; Septic progress:ARDS20;


title: RMA-Plt_0h-1MP-s2


title: RAL-CtrPlate_0h-4aUA-s2


title: RMA-TH1_48h-2MP-s2


title: RMA-TH2_48h-2MP-s2


title: BHH-GFP_16h-1aUA-s2b

status: Public on Dec 13 2007

description: Cells were harvested 16 hours after infection with the Ad-GFP virus.

source_name: Human U2OS cell line

tag: time after infection:16 hour; type of virus:GFP;


title: RAL-CtrPlate_0h-3aUAc-s2


title: AGEI-72h_ARDS9-1UA

description: Septic individual ARDS9 at 72h

tag: time:72h; Septic progress:ARDS9;


title: RMA-Plt_48h-1MP-s2


title: AGEI-0h_ARDS20-1UA

description: Septic individual ARDS20 at 0h

tag: time:0h; Septic progress:ARDS20;


title: AGEI-0h_ARDS15-1UA

description: Septic individual ARDS 15 at 0h.

tag: time:0h; Septic progress:ARDS15;


title: BHH-GFP_20h-1aUA-s2

description: Cells were harvested 20 hours after infection with the Ad-GFP virus.

tag: time after infection:20 hour; type of virus:GFP;


title: BHH-HIC1_14h-1aUA-s2

description: Cells were harvested 14 hours after infection with the Ad-HIC1 virus.

tag: time after infection:14 hour; type of virus:HIC1;


title: BHH-HIC1_16h-1aUA-s2

description: Cells were harvested 16 hours after infection with the Ad-HIC1 virus.

tag: time after infection:16 hour; type of virus:HIC1;


title: BHH-HIC1_22h-1aUA-s2

description: Cells were harvested 22 hours after infection with the Ad-HIC1 virus.

tag: time after infection:22 hour; type of virus:HIC1;


title: BHH-HIC1_12h-1aUA-s2

description: Cells were harvested 12 hours after infection with the Ad-HIC1 virus.

tag: time after infection:12 hour; type of virus:HIC1;


title: BHH-GFP_12h-1aUA-s2

description: Cells were harvested 12 hours after infection with the Ad-GFP virus.

tag: time after infection:12 hour; type of virus:GFP;


title: BHH-GFP_24h-1aUA-s2

description: Cells were harvested 24 hours after infection with the Ad-GFP virus.

tag: time after infection:24 hour; type of virus:GFP;


title: BHH-GFP_18h-1aUA-s2

description: Cells were harvested 18 hours after infection with the Ad-GFP virus.

tag: time after infection:18 hour; type of virus:GFP;


title: BHH-GFP_22h-1aUA-s2

description: Cells were harvested 22 hours after infection with the Ad-GFP virus.

tag: time after infection:22 hour; type of virus:GFP;


title: BHH-GFP_8h-1aUA-s2

description: Cells were harvested 8 hours after infection with the Ad-GFP virus.

tag: time after infection:8 hour; type of virus:GFP;


title: BHH-GFP_26h-1aUA-s2d

description: Cells were harvested 26 hours after infection with the Ad-GFP virus.


title: BHH-HIC1_24h-1aUA-s2

description: Cells were harvested 24 hours after infection with the Ad-HIC1 virus.

tag: time after infection:24 hour; type of virus:HIC1;


title: BHH-HIC1_20h-1aUA-s2

description: Cells were harvested 20 hours after infection with the Ad-HIC1 virus.

tag: time after infection:20 hour; type of virus:HIC1;


title: BHH-HIC1_18h-1aUA-s2

description: Cells were harvested 18 hours after infection with the Ad-HIC1 virus.

tag: time after infection:18 hour; type of virus:HIC1;


title: BHH-HIC1_26h-1aUA-s2

description: Cells were harvested 26 hours after infection with the Ad-HIC1 virus.

tag: time after infection:26 hour; type of virus:HIC1;


title: BHH-GFP_14h-1aUA-s2

description: Cells were harvested 14 hours after infection with the Ad-GFP virus.

tag: time after infection:14 hour; type of virus:GFP;


title: BHH-HIC1_8h-1aUA-s2b

description: Cells were harvested 8 hours after infection with the Ad-HIC1 virus.

tag: time after infection:8 hour; type of virus:HIC1;


title: BHH-Control-1aUA-s2

tag: time after infection:0 hour; type of virus:Control;


title: VSC-GM_5mM-2MB-s2

status: Public on Dec 07 2007

source_name: Murine cell culture (C2C12)

tag: Glc concentration:5mM; condition:GM;


title: VSC-DM_5mM-1MB-s2

tag: Glc concentration:5mM; condition:DM;


title: VSC-GM_5mM-1MB-s2


title: VSC-DM_25mM-1MB-s2

tag: Glc concentration:25mM; condition:DM;


title: VSC-DM_25mM-2MB-s2


title: VSC-GM_25mM-2MB-s2

tag: Glc concentration:25mM; condition:GM;


title: VSC-DM_25mM-3MA-s2


title: VSC-GM_25mM-3MB-s2


title: VSC-GM_5mM-3MB-s2


title: VSC-DM_5mM-3MA-s2


title: VSC-DM_5mM-1MA-s2


title: VSC-DM_5mM-2MB-s2


title: VSC-GM_25mM-1MB-s2


title: VSC-GM_5mM-1MA-s2


title: VSC-GM_25mM-3MA-s2


title: VSC-GM_5mM-2MA-s2


title: VSC-DM_5mM-2MA-s2


title: VSC-GM_25mM-2MA-s2


title: VSC-DM_5mM-3MB-s2


title: VSC-DM_25mM-2MA-s2


title: VSC-GM_5mM-3MA-s2


title: AGEI-72h_ARDS15-1UA

description: Septic individual ARDS 15 at 72h.

tag: time:72h; Septic progress:ARDS15;


title: VSC-DM_25mM-1MA-s2


title: Richard Almon-13-1138200269789

status: Public on Sep 11 2007

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 1 hours after lights on.  Original RNA code = LC20A.

organism: Rattus norvegicus

source_name: Rat Liver

tag: Time after lights on:1 hr;


title: Richard Almon-14-1138200269805

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 1 hours after lights on.  Original RNA code = LC38A.


title: Richard Almon-23-1138200270164

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 8 hours after lights on.  Original RNA code = LC6A.

tag: Time after lights on:8 hr;


title: Richard Almon-3-1138200269446

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 11 hours after lights on.  Original RNA code = LC26A.

tag: Time after lights on:11 hr;


title: Richard Almon-16-1138200269883

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 2 hours after lights on.  Original RNA code = LC21A.

tag: Time after lights on:2 hr;


title: Richard Almon-31-1138200270399

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 11.75 hours after lights on.  Original RNA code = LC9A.

tag: Time after lights on:11.75 hr;


title: Richard Almon-35-1138200270524

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 12.25 hours after lights on.  Original RNA code = LC28A.

tag: Time after lights on:12.25 hr;


title: Richard Almon-32-1138200270430

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 11.75 hours after lights on.  Original RNA code = LC27A.


title: FSH-FSHD-24UA-s2

status: Public on Oct 23 2007

source_name: Human skeletal muscle

tag: disease state:FSHD;


title: Richard Almon-52-1138200270977

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 22 hours after lights on.  Original RNA code = LC52A.

tag: Time after lights on:22 hr;


title: Richard Almon-4-1138200269492

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 14 hours after lights on.  Original RNA code = LC12A.

tag: Time after lights on:14 hr;


title: Richard Almon-51-1138200270961

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 22 hours after lights on.  Original RNA code = LC34A.


title: Richard Almon-22-1138200270133

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 6 hours after lights on.  Original RNA code = LC41A.

tag: Time after lights on:6 hr;


title: Richard Almon-2-1138200269414

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 4 hours after lights on.  Original RNA code = LC40A.

tag: Time after lights on:4 hr;


title: Richard Almon-42-1138200270711

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 16 hours after lights on.  Original RNA code = LC13A.

tag: Time after lights on:16 hr;


title: Richard Almon-10-1138200269680

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 0.25 hours after lights on.  Original RNA code = LC19A.

tag: Time after lights on:0.25 hr;


title: Richard Almon-8-1138200269617

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 23.75 hours after lights on.  Original RNA code = LC36A.

tag: Time after lights on:23.75 hr;


title: Richard Almon-33-1138200270461

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 11.75 hours after lights on.  Original RNA code = LC45A.


title: Richard Almon-24-1138200270196

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 8 hours after lights on.  Original RNA code = LC24A.


title: Richard Almon-20-1138200270055

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 6 hours after lights on.  Original RNA code = LC5A.


title: Richard Almon-15-1138200269836

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 2 hours after lights on.  Original RNA code = LC3A.


title: Richard Almon-43-1138200270742

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 16 hours after lights on.  Original RNA code = LC31A.


title: Richard Almon-21-1138200270102

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 6 hours after lights on.  Original RNA code = LC23A.


title: Richard Almon-17-1138200269946

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 2 hours after lights on.  Original RNA code = LC39A.


title: Richard Almon-50-1138200270930

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 22 hours after lights on.  Original RNA code = LC16A.


title: Richard Almon-37-1138200270586

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 13 hours after lights on.  Original RNA code = LC11A.

tag: Time after lights on:13 hr;


title: Richard Almon-49-1138200270899

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 20 hours after lights on.  Original RNA code = LC33A.

tag: Time after lights on:20 hr;


title: Richard Almon-48-1138200270883

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 20 hours after lights on.  Original RNA code = LC15A.


title: Richard Almon-44-1138200270774

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 16 hours after lights on.  Original RNA code = LC49A.


title: Richard Almon-30-1138200270367

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h.  This animal was sacrificed at 11 hours after lights on.  Original RNA code = LC44A.


title: Richard Almon-40-1138200270664

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 14 hours after lights on.  Original RNA code = LC30A.


title: Richard Almon-9-1138200269649

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 23.75 hours after lights on.  Original RNA code = LC54A.


title: Richard Almon-46-1138200270821

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 18 hours after lights on.  Original RNA code = LC32A.

tag: Time after lights on:18 hr;


title: Richard Almon-25-1138200270227

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 8 hours after lights on.  Original RNA code = LC42A.


title: Richard Almon-19-1138200270008

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 4 hours after lights on.  Original RNA code = LC22A.


title: Richard Almon-36-1138200270555

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 12.25 hours after lights on.  Original RNA code = LC46A.


title: Richard Almon-29-1138200270352


title: Richard Almon-54-1138200271039

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 23 hours after lights on.  Original RNA code = LC35A.

tag: Time after lights on:23 hr;


title: Richard Almon-27-1138200270289

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 10 hours after lights on.  Original RNA code = LC25A.

tag: Time after lights on:10 hr;


title: Richard Almon-11-1138200269727

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 0.25 hours after lights on.  Original RNA code = LC37A.


title: Richard Almon-34-1138200270492

description: This animal was sacrificed at 12.25 hours after lights on.  Original RNA code = LC10A.


title: Richard Almon-5-1138200269524

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 20 hours after lights on.  Original RNA code = LC51A.


title: Richard Almon-18-1138200269977

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 4 hours after lights on.  Original RNA code = LC4A.


title: Richard Almon-12-1138200269758

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 1 hours after lights on.  Original RNA code = LC2A.

tag: Time after lights on:1 hr;


title: Richard Almon-38-1138200270602

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 13 hours after lights on.  Original RNA code = LC29A.


title: Richard Almon-26-1138200270258

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 10 hours after lights on.  Original RNA code = LC7A.


title: Richard Almon-47-1138200270852

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 18 hours after lights on.  Original RNA code = LC50A.


title: Richard Almon-39-1138200270633

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 13 hours after lights on.  Original RNA code = LC47A.


title: Richard Almon-53-1138200271008

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 23 hours after lights on.  Original RNA code = LC17A.


title: Richard Almon-7-1138200269586

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 23.75 hours after lights on.  Original RNA code = LC18A.


title: Richard Almon-41-1138200270696

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 14 hours after lights on.  Original RNA code = LC48A.


title: Richard Almon-45-1138200270805

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 18 hours after lights on.  Original RNA code = LC14A.


title: Richard Almon-6-1138200269555

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 23 hours after lights on.  Original RNA code = LC53A.


title: Richard Almon-28-1138200270321

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 10 hours after lights on.  Original RNA code = LC43A.


title: Richard Almon-1-1138200269274

description: Rats were housed in a tightly controlled environment with light:dark periods of 12h each. 3 animals per time point were sacrificed at 18 different times within the 24h. This animal was sacrificed at 0.25 hours after lights on. Original RNA code = LC1A.


title: Richard Almon-34-1133800609792

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 22 hours after lights on. Original sample code = CM34A

source_name: Rat Skeletal Muscle (gas)


title: Richard Almon-27-1133800609589

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 11.75 hours after lights on. Original sample code = CM27A


title: Richard Almon-30-1133800609682

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 14 hours after lights on. Original sample code = CM30A


title: Richard Almon-25-1133800609542

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 10 hours after lights on. Original sample code = CM25A


title: Richard Almon-6-1133800608901

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 8 hours after lights on.Original sample code = CM6A

tag: Time after lights on:8 hr;


title: Richard Almon-49-1133800610260

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 16 hours after lights on. Original sample code = CM49A


title: Richard Almon-18-1133800609323

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 23.75 hours after lights on. Original sample code = CM18A


title: Richard Almon-7-1133800608932

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 10 hours after lights on. Original sample code = CM7A


title: Richard Almon-26-1133800609573

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 11 hours after lights on. Original sample code = CM26A

tag: Time after lights on:11 hr;


title: Richard Almon-39-1133800609995

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 2 hours after lights on.Original sample code = CM39A

tag: Time after lights on:2 hr;


title: Richard Almon-24-1133800609510

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 8 hours after lights on.Original sample code = CM24A


title: Richard Almon-36-1133800609901

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 23.75 hours after lights on. Original sample code = CM36A


title: Richard Almon-38-1133800609964

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 1 hour after lights on. Original sample code = CM38A


title: Richard Almon-51-1133800610323

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 20 hours after lights on. Original sample code = CM51A


title: Richard Almon-20-1133800609385

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 1 hour after lights on. Original sample code = CM20A


title: Richard Almon-46-1133800610182

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 12.25 hours after lights on. Original sample code = CM46A

tag: Time after lights on:12.25 hr;


title: Richard Almon-45-1133800610151

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 11.75 hours after lights on. Original sample code = CM45A

tag: Time after lights on:11.75 hr;


title: Richard Almon-23-1133800609479

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 6 hours after lights on.Original sample code = CM23A


title: Richard Almon-8-1133800608948

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 11 hours after lights on. Original sample code = CM8A


title: Richard Almon-4-1133800608823

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 4 hours after lights on.Original sample code = CM4A


title: Richard Almon-2-1133800608760

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 1 hour after lights on. Original sample code = CM2A


title: Richard Almon-43-1133800610104

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 10 hours after lights on. Original sample code = CM43A


title: Richard Almon-40-1133800610026

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 4 hours after lights on.Original sample code = CM40A


title: Richard Almon-14-1133800609151

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 18 hours after lights on. Original sample code = CM14A


title: Richard Almon-52-1133800610354

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 22 hours after lights on.Original sample code = CM52A

tag: Time after lights on:22 hr;


title: Richard Almon-3-1133800608792

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 2 hours after lights on.Original sample code = CM3A


title: Richard Almon-17-1133800609276

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 23 hours after lights on. Original sample code = CM17A


title: Richard Almon-47-1133800610214

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 13 hours after lights on. Original sample code = CM47A


title: Richard Almon-33-1133800609760

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 20 hours after lights on. Original sample code = CM33A


title: VSC-DM_25mM-3MB-s2

tag: Glc concentration:25mM; condition:DM;


title: Richard Almon-50-1133800610292

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 18 hours after lights on. Original sample code = CM50A


title: Richard Almon-21-1133800609417

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 2 hours after lights on.Original sample code = CM21A


title: Richard Almon-42-1133800610073

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 8 hours after lights on.Original sample code = CM42A


title: Richard Almon-29-1133800609651

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 13 hours after lights on. Original sample code = CM29A


title: Richard Almon-53-1133800610370

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 23 hours after lights on.Original sample code = CM53A


title: Richard Almon-28-1133800609620

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 12.25 hours after lights on. Original sample code = CM28A


title: Richard Almon-32-1133800609745

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 18 hours after lights on. Original sample code = CM32A


title: Richard Almon-37-1133800609932

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 0.25 hours after lights on. Original sample code = CM37A.


title: Richard Almon-31-1133800609714

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 16 hours after lights on. Original sample code = CM31A


title: Richard Almon-35-1133800609839

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 23 hours after lights on.Original sample code = CM35A


title: Richard Almon-11-1133800609057

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 13 hours after lights on. Original sample code = CM11A


title: Richard Almon-15-1133800609182

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 20 hours after lights on. Original sample code = CM15A


title: Richard Almon-54-1133800610401

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 23.75 hours after lights on.Original sample code = CM54A


title: Richard Almon-16-1133800609214

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 22 hours after lights on. Original sample code = CM16A


title: Richard Almon-48-1133800610245

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 14 hours after lights on. Original sample code = CM48A

tag: Time after lights on:14 hr;


title: Richard Almon-10-1133800609010

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 12.25 hours after lights on. Original sample code = CM10A


title: Richard Almon-5-1133800608870

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 6 hours after lights on.Original sample code = CM5A

tag: Time after lights on:6 hr;


title: Richard Almon-22-1133800609448

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 4 hours after lights on.Original sample code = CM22A

tag: Time after lights on:4 hr;


title: Richard Almon-1-1133800608698

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 0.25 hours after lights on. Original sample code = CM1A.

tag: Time after lights on:0.25 hr;


title: Richard Almon-12-1133800609089

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 14 hours after lights on. Original sample code = CM12A


title: Richard Almon-44-1133800610135

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 11 hours after lights on. Original sample code = CM44A


title: VSC-GM_25mM-1MA-s2

tag: Glc concentration:25mM; condition:GM;


title: Richard Almon-9-1133800608979

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 11.75 hours after lights on. Original sample code = CM9A


title: Richard Almon-19-1133800609354

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 0.25 hours after lights on. Original sample code = CM19A.


title: Richard Almon-13-1133800609120

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour. This animal was sacrificed at 16 hours after lights on. Original sample code = CM13A

tag: Time after lights on:16 hr;


title: Cast-I-1aA-s2

status: Public on Aug 28 2007

description: Medial gastrocnemius from immobilization leg


title: Cast-I-4bA-s2


title: Cast-C-3aA-s2

description: Medial gastrocnemius from contralateral leg


title: Cast-C-4bA-s2


title: Richard Almon-41-1133800610057

description: Rats (3 per time point) were housed in a tightly controlled environment with light:dark cycles of 12 hours each and were sacrificed at 18 times within the 24 hour.This animal was sacrificed at 6 hours after lights on.Original sample code = CM41A


title: Cast-C-1bA-s2


title: Cast-CI-6bAv2-s2

description: Medial gastrocnemius from control leg


title: Cast-C-6bAv2-s2


title: Cast-I-5bAv2-s2


title: Cast-I-2aA-s2


title: Cast-C-2bA-s2


title: Cast-C-6aAv2-s2


title: Cast-CI-5bAv2-s2

description: Medial gastrocnemius from control leg


title: Cast-I-4aA-s2


title: Cast-I-3aA-s2


title: Cast-C-5bAv2-s2


title: Cast-I-3bA-s2


title: Cast-C-2aA-s2


title: Cast-I-6aAv2-s2


title: Cast-C-4aA-s2


title: Cast-I-6bAv2-s2


title: Cast-C-1aA-s2


title: Cast-CI-5aAv2-s2

description: Medial gastrocnemius from control leg


title: MRenni-24hExercise-2RMC-s2

status: Public on Mar 27 2007

description: 21 year old male 24 post con exercise

tag: time of exercise:24 hour; type of exercise:Concentric;


title: Cast-C-5aAv2-s2


title: Cast-C-3bA-s2


title: Cast-CI-6aAv2-s2

description: Medial gastrocnemius from control leg


title: Cast-I-2bA-s2


title: Cast-I-1bA-s2


title: MRenni-6hExercise-3RMC-s2

description: 22 year old male 6 hour post con exercise

source_name: Human skeletal muscle 6 hour post con exercise

tag: time of exercise:6 hour; type of exercise:Concentric;


title: MRenni-PreExercise-1RMC-s2

description: 20 year old male pre ecc exercise

source_name: Human skeletal muscle pre ecc exercise

tag: time of exercise:0 hour (pre); type of exercise:Eccentric;


title: MRenni-3hExercise-2RMC-s2

description: 21 year old male 3 hour post con exercise

source_name: Human skeletal muscle 3 hour post con exercise

tag: time of exercise:3 hour; type of exercise:Concentric;


title: MRenni-3hExercise-3LMC-s2

description: 22 year old male 3 hour post ecc exercise

source_name: Human skeletal muscle 3 hour post ecc exercise

tag: time of exercise:3 hour; type of exercise:Eccentric;


title: MRenni-3hExercise-3RMC-s2

description: 22 year old male 3 hour post con exercise


title: MRenni-6hExercise-1LMC-s2

description: 20 year old male 6 hour post con exercise


title: Cast-I-5aAv2-s2


title: MRenni-24hExercise-3RMC-s2

description: 22 year old male 24 post con exercise

source_name: Human skeletal muscle 24 post con exercise


title: MRenni-6hExercise-2RMC-s2

description: 21 year old male 6 hour post con exercise


title: MRenni-3hExercise-1LMC-s2

description: 20 year old male 3 hour post con exercise


title: MRenni-PreExercise-3RMC-s2

description: 22 year old male pre con exercise

source_name: Human skeletal muscle pre con exercise

tag: time of exercise:0 hour (pre); type of exercise:Concentric;


title: MRenni-6hExercise-2LMC-s2

description: 21 year old male 6 hour post ecc exercise

source_name: Human skeletal muscle 6 hour post ecc exercise

tag: time of exercise:6 hour; type of exercise:Eccentric;


title: MRenni-PreExercise-2RMC-s2

description: 21 year old male pre con exercise


title: MRenni-PreExercise-3LMC-s2

description: 22 year old male pre ecc exercise


title: MRenni-PreExercise-1LMC-s2

description: 20 year old male pre con exercise


title: MRenni-3hExercise-1RMC-s2

description: 20 year old male 3 hour post ecc exercise


title: MRenni-24hExercise-3LMC-s2

description: 22 year old male 24 psot ecc exercise

source_name: Human skeletal muscle 24 psot ecc exercise

tag: time of exercise:24 hour; type of exercise:Eccentric;


title: MRenni-PreExercise-2LMC-s2

description: 21 year old male pre ecc exercise


title: MRenni-24hExercise-1LMC-s2

description: 20 year old male 24 hour post con exercise

source_name: Human skeletal muscle 24 hour post con exercise


title: MRenni-3hExercise-2LMC-s2

description: 21 year old male 3 hour post ecc exercise


title: MRenni-24hExercise-2LMC-s2

description: 21 year old male 24 post ecc exercise

source_name: Human skeletal muscle 24 post ecc exercise


title: MRenni-6hExercise-3LMC-s2

description: 22 year old male 6 hour post ecc exercise


title: MRenni-6hExercise-1RMC-s2

description: 20 year old male 6 hour post ecc exercise


title: MRenni-24hExercise-1RMC-s2

description: 20 year old male 24 hour post ecc exercise

source_name: Human skeletal muscle 24 hour post ecc exercise


title: VMM-WT_MyoD6h-2MP-s2

status: Public on Dec 13 2006

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with ER-MyoD wt in differentiation media for 6hrs

source_name: Murine cell culture

tag: Post Transduction:6 hr; treatment:WT;


title: VMM-None_MyoD24h-2MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with retrovirus without ER-MyoD insert in differentiation media for 24hrs

tag: Post Transduction:24 hr; treatment:Control;


title: VMM-None_MyoD12h-1MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with retrovirus without ER-MyoD insert in differentiation media for 12hrs

tag: Post Transduction:12 hr; treatment:Control;


title: VMM-WT_MyoD12h-2MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with ER-MyoD wt in differentiation media for 12hrs

tag: Post Transduction:12 hr; treatment:WT;


title: VMM-None_MyoD6h-2MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with retrovirus without ER-MyoD insert in differentiation media for 6hrs

tag: Post Transduction:6 hr; treatment:Control;


title: VMM-MUT_MyoD6h-3MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with ER-MyoD RRR in differentiation media for 6hrs

tag: Post Transduction:6 hr; treatment:Mut;


title: VMM-MUT_MyoD24h-3MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with ER-MyoD RRR in differentiation media for 24hrs

tag: Post Transduction:24 hr; treatment:Mut;


title: VMM-None_MyoD24h-3MP-s2


title: VMM-MUT_MyoD12h-2MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with ER-MyoD RRR in differentiation media for 12hrs

tag: Post Transduction:12 hr; treatment:Mut;


title: VMM-WT_MyoD0h-1MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with ER-MyoD wt in differentiation media for 0hr

tag: Post Transduction:0 hr; treatment:WT;


title: VMM-None_MyoD12h-2MP-s2


title: VMM-WT_MyoD0h-3MP-s2


title: VMM-WT_MyoD12h-1MP-s2


title: VMM-None_MyoD6h-3MP-s2


title: VMM-None_MyoD12h-3MP-s2


title: VMM-WT_MyoD0h-2MP-s2


title: VMM-None_MyoD6h-1MP-s2


title: VMM-MUT_MyoD6h-2MP-s2


title: VMM-MUT_MyoD6h-1MP-s2


title: VMM-WT_MyoD6h-1MP-s2


title: VMM-MUT_MyoD24h-1MP-s2


title: VMM-WT_MyoD24h-3MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with ER-MyoD wt in differentiation media for 24hrs

tag: Post Transduction:24 hr; treatment:WT;


title: VMM-MUT_MyoD24h-2MP-s2


title: PHM-DM-5aUA-s2

status: Public on Jul 21 2006

description: expression profile pre-treatment a 49 year-old patient with clinical diagnosis of dermatomyositis

tag: disease state:DM;


title: VMM-WT_MyoD12h-3MP-s2


title: VMM-WT_MyoD24h-1MP-s2


title: VMM-MUT_MyoD12h-3MP-s2


title: VMM-WT_MyoD24h-2MP-s2


title: FSH-NHM-6UB-s2

status: Public on Jul 18 2006

description: wash the probe with water last time

tag: tissue type:Human Adult Skeletal Muscle;


title: FSH-NHM-2UB-S2

description: normal muscle hybridization mix labeled142 comes from Yi-wen


title: VMM-MUT_MyoD12h-1MP-s2


title: FSH-NHM-12UB-s2

description: add 30ul frag cRNA to hyb mix


title: FSH-NHM-3UB-s2

description: total RNA from collaborater


title: FSH-NHM-11UB-s2

description: add 30ul frag cRNA to hyb mix


title: PHM-DM-4aUA-s2

description: expression profile pre-treatment a 62 year-old patient with clinical diagnosis of dermatomyositis


title: JMH-MALHYP-1UB-s2

description: Normal volunteer;  RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision

tag: tissue type:Normal Human Skeletal Muscle;


title: FSH-NHM-9UB-s2

description: sample 353 is same as sample 341 and add 35ul frag cRNA to hyb mix


title: PHM-DM-2aUA-s2

description: expression profile pre-treatment a 65 year-old patient with clinical dermatomyositis


title: PHE-6hExerciseB-2UB-s2

tag: excersice type:concentric;


title: JMH-MALHYP-2UB-s2


title: FSH-NHM-10UB-s2

description: add 35ul frag cRNA to hyb mix


title: FSH-NHM-4UB-s2

description: total RNA from collaborater


title: PHE-8hExerciseB-3UB-s2


title: PHM-DM-3aUA-s2

description: expression profile pre-treatment patients with clinical diagnosis of dermatomyositis


title: PHM-DM-1aUA-s2

description: pre-treatment expression profiles of a 52 year-old patient with clinical diagnosis of dermatomyositis


title: FSH-NHM-8UB-s2

description: sample 353 is same as sample 334 and add 35ul frag cRNA to hyb mix


title: PHE-4hExerciseB-1UB-s2


title: FSH-NHM-1UB-S2

description: nomal skeletal muscle from a male 30 year-old healthy volunteer.


title: FSH-FSHD-26UB-s2

description: Fascioscapulohumeral muscular dystrophy

tag: disease state:FSHD;


title: FSH-FSHD-23UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: VMM-None_MyoD24h-1MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with retrovirus without ER-MyoD insert in differentiation media for 24hrs


title: FSH-FSHD-20UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-Dysferlin-1UB-S2

description: Dysferlinopathy: female patient 19 years old; RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision

tag: disease state:Dysferlin;


title: FSH-Dysferlin-2UB-S2

description: Dysferlinopathy: female patient 26 years old; RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision


title: HSP-Spg4-2aUB-s2


title: FSH-DMD-20UB-s2

description: Duchenne muscular dystrophy male patient; RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision

tag: disease state:DMD;


title: FSH-FSHD-4UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-FSHD-19UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-DMD-23UB-s2


title: FSH-FSHD-1UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: HSP-Spg4-1aUB-s2


title: FSH-FSHD-25UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-FSHD-17UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-FSHD-5UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: HSP-Spg7-4aUB-s2


title: FSH-FSHD-3UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-FSHD-2UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-FSHD-22UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: HSP-Spg4-3aUB-s2


title: FSH-FSHD-21UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-Dysferlin-3UB-S2

description: Dysferlinopathy: male patient 37 years old; RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision


title: FSH-DMD-25UB-s2

description: Duchenne muscular dystrophy male patient 9 years old; RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision


title: FSH-Dysferlin-4UB-S2

description: Dysferlinopathy: male patient 16 years old; RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision


title: FSH-Dysferlin-5UB-S2

description: Dysferlinopathy: male patient 22 years old; RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision


title: FSH-FSHD-18UB-s2

description: Fascioscapulohumeral muscular dystrophy


title: YJD-JDM-14UB-s2

description: 35ul fragmented cRNA to hyb mix

tag: disease state:JDM;


title: FSH-DMD-19UB-s2

description: Duchenne muscular dystrophy male patient 5 years old; RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision


title: YJD-JDM-5UB-s2

description: wash the probe with water last time


title: YJD-JDM-19UB-s2

description: 30ul fragmented cRNA to hyb mix


title: YJD-JDM-9UB-S2

description: add 34ul frag cRNA in hybmix


title: YJD-JDM-15UB-s2

description: 35ul fragmented cRNA to hyb mix


title: FSH-DMD-22UB-s2

description: Duchenne muscular dystrophy male patient 7 years old; RNA extracted from muscle biopsy, which was flash-frozen in isopentane cooled in liquid nitrogen immediately after excision


title: YJD-JDM-7UB-s2

description: frag 359 with new frag buffer and add 40ul frag cRNA in 250ul hyb mix


title: YJD-JDM-25UB-s2

description: 30ul fragmented cRNA to hyb mix


title: VMM-WT_MyoD6h-3MP-s2

description: Mouse embryonic fibroblast derived from MyoD-/-/Myf5-/- animals transduced with ER-MyoD wt in differentiation media for 6hrs

tag: Post Transduction:6 hr; treatment:WT;


title: YJD-JDM-13UB-s2

description: 35ul fragmented cRNA to hyb mix


title: YJD-JDM-12UB-s2

description: 35ul fragmented cRNA to hyb mix


title: YJD-JDM-2UB-s2

description: the replica of 348a is cDNA 348b


title: YJD-JDM-3UB-s2

description: the replica of 350a is cDNA 350b


title: YJD-JDM-20UB-s2

description: 32ul fragmented cRNA to hyb mix


title: HUD-EDMD-8aUB-s2

tag: disease state:EDMD AD;


title: YJD-JDM-6UB-s2

description: frag 356 with new frag buffer and add 35ul frag cRNA in hyb mix


title: YJD-JDM-4UB-s2

description: frag 360 with new frag buffer


title: YJD-JDM-16UB-s2

description: 35ul fragmented cRNA to hyb mix


title: YJD-JDM-1UB-s2

description: the replica of 349b is cDNA349a and  use new primer  do  cDNA synthesis of 349b


title: YJD-JDM-23UB-s2

description: 32ul fragmented cRNA to hyb mix


title: HUD-EDMD-7aUB-s2

tag: disease state:EDMD XR;


title: YJD-JDM-8UB-s2

description: frag 357 with new frag buffer and add 40ul frag cRNA in 250ul hyb mix


title: YJD-JDM-10UB-S2

description: add 34ul frag cRNA in hybmix


title: HUD-DMD-1aUB-s2

description: DMD-1 Male Subject 1a


title: YJD-JDM-18UB-s2

description: 35ul fragmented cRNA to hyb mix


title: HUD-Calpain3-1bUB-s2

description: Calpain-3 Male Subject 1b

tag: disease state:LGMD2A;


title: HUD-FKRP-6bUB-s2

description: FKRP-6 male Subject 6a

tag: disease state:LGMD2I;


title: HUD-FKRP-7aUB-s2

description: FKRP-7 male Subject 7a


title: YJD-JDM-21UB-s2

description: 32ul fragmented cRNA to hyb mix


title: HUD-BMD-4aUB-s2

description: BMD-4 Male Subject 1a

tag: disease state:BMD;


title: HUD-Calpain3-2bUB-s2

description: Calpain3 Male subject 2a


title: HUD-Dysferlin-5aUB-s2

description: Dysfelrin-5 sex NA Subject 1a

tag: disease state:LGMD2B;


title: HUD-NHM-11aUB-s2

description: NHM Male Subject 11a

tag: disease state:Control;


title: HUD-unkJ-1aUB-s2

description: knkJ-1 Male Subject 1a


title: HUD-Calpain3-6aUB-s2

description: Calpain-3 Male Subject 6a


title: HUD-Calpain3-7aUB-s2

description: Calpain-3 Male Subject 7a


title: HUD-EDMD-6aUB-s2


title: HUD-BMD-2aUB-s2

description: BMD-2 Male Subject 1a


title: HUD-EDMD-3aUB-s2

description: EDMD-3 Male Subject 1a


title: HUD-Dysferlin-2aUB-s2

description: Dysfelrin-2 male Subject 1a


title: FSH-FSHD-17UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: HUD-EDMD-2aUB-s2

description: EDMD-2 Male Subject 1a


title: HUD-DMD-2aUB-s2

description: DMD-2 Male Subject 1a


title: HUD-Calpain3-5aUB-s2

description: Calpain-3 Male Subject 5a


title: YJD-JDM-23UA-s2

description: Juvenile dermatomyositis


title: YJD-JDM-1UA-s2

description: Juvenile dermatomyositis


title: HUD-FKRP-7bUB-s2

description: FKRP-7 male Subject 7b


title: YJD-JDM-3UA-s2

description: Juvenile dermatomyositis


title: HUD-FKRP-6aUB-s2

description: FKRP-6 male Subject 6a


title: YJD-JDM-19UA-s2

description: Juvenile dermatomyositis


title: HUD-Calpain3-9aUB-s2

description: Calpain-3 Male Subject 9a


title: YJD-JDM-6UA-s2

description: Juvenile dermatomyositis


title: HUD-FKRP-1bUB-s2

description: FKRP-1 female Subject 1a


title: YJD-JDM-8UA-s2

description: Juvenile dermatomyositis


title: HUD-FKRP-1aUB-s2

description: FKRP-1 female Subject 1a


title: YJD-JDM-5UA-s2

description: Juvenile dermatomyositis


title: YJD-JDM-9UA-S2

description: Juvenile dermatomyositis


title: HUD-Dysferlin-4aUB-s2

description: Dysfelrin-4 female Subject 1a


title: YJD-JDM-16UA-s2

description: Juvenile dermatomyositis


title: HUD-NHM-13aUB-s2

description: NHM Male Subject 13a


title: HUD-EDMD-5aUB-s2

description: EDMD-5 Male Subject 1a


title: YJD-JDM-7UA-s2

description: Juvenile dermatomyositis


title: HUD-BMD-5aUB-s2

description: BMD-5 Male Subject 1a


title: HUD-DMD-5aUB-s2

description: DMD-5 Male Subject 1a


title: HUD-EDMD-4aUB-s2

description: EDMD-4 Male Subject 1a


title: YJD-JDM-2UA-s2

description: Juvenile dermatomyositis


title: YJD-JDM-21UA-s2

description: Juvenile dermatomyositis


title: YJD-JDM-4UA-s2

description: Juvenile dermatomyositis


title: YJD-JDM-20UA-s2

description: Juvenile dermatomyositis


title: YJD-JDM-13UA-s2

description: Juvenile dermatomyositis


title: HUD-NHM-12aUB-s2

description: NHM Male Subject 12a


title: HUD-Calpain3-3aUB-s2

description: Calpain3 subject 3b


title: YJD-JDM-18UA-s2

description: Juvenile dermatomyositis


title: YJD-JDM-12UA-s2

description: Juvenile dermatomyositis


title: YJD-JDM-14UA-s2

description: Juvenile dermatomyositis


title: HUD-BMD-3aUB-s2

description: BMD-3 Male Subject 1a


title: HUD-DMD-4aUB-s2

description: DMD-4 Male Subject 1a


title: HUD-DMD-3aUB-s2

description: DMD-3 Male Subject 1a


title: HUD-Calpain3-1aUB-s2

description: Calpain-3 Male Subject 1a


title: YJD-JDM-25UA-s2

description: Juvenile dermatomyositis


title: HUD-EDMD-1aUB-s2

description: EDMD-1 Male Subject 1a


title: HUD-FKRP-3aUB-s2

description: FKRP-3 female Subject 1a


title: YJD-JDM-15UA-s2

description: Juvenile dermatomyositis


title: FSH-FSHD-2UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: HUD-Dysferlin-1aUB-s2

description: Dysfelrin-1 female Subject 1a


title: FSH-FSHD-1UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: HUD-BMD-1aUB-s2

description: BMD-1 Male Subject 1a

source_name: Human Cells


title: HUD-Dysferlin-3aUB-s2

description: Dysfelrin-3 female Subject 1a


title: FSH-FSHD-25UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: HUD-Calpain3-4aUB-s2

description: Calpain-3 Male Subject 4a


title: FSH-FSHD-23UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-FSHD-21UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: END-ALS-4aUB-S2

description: Idenitify pathophysiological pathway invloved in muscle atrophy due to denervation in ALS patients

tag: disease state:ALS;


title: YJD-JDM-10UA-S2

description: Juvenile dermatomyositis


title: END-ALS-1bUB-S2


title: END-ALS-3bUB-S2


title: FSH-FSHD-19UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: END-ALS-2aUB-S2


title: FSH-FSHD-3UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-DMD-20UA-s2


title: END-ALS-4bUB-S2


title: FSH-FSHD-26UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-DMD-23UA-s2


title: END-ALS-3aUB-S2


title: AQM-t66yM-1aUB-s2

description: Patients with severe systemic illness and exposure to corticosteroids or neuroblocking agents. They show myofiber atrophy and thick filament loss.

tag: disease state:Normal; Gender:Male;


title: END-ALS-5aUB-S2


title: FSH-DMD-25UA-s2


title: FSH-FSHD-20UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-FSHD-22UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-FSHD-18UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: AQM-76yF-1aUB-s2

tag: disease state:Myogenic atrophy AQM; Gender:Female;


title: END-ALS-1aUB-S2


title: FSH-FSHD-5UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: END-ALS-2bUB-S2


title: AQM-n66yM-1aUB-s2


title: FSH-DMD-22UA-s2


title: FSH-FSHD-4UA-s2

description: Fascioscapulohumeral muscular dystrophy


title: FSH-DMD-19UA-s2


title: AQM-77yF-1aUB-s2


title: AQM-64yM-1aUB-s2

tag: disease state:Myogenic atrophy AQM; Gender:Male;


title: VSD-pHanDM36h-1bAv2-s2

status: Public on Jul 14 2006

description: Sir2 and myoblast differentiation

source_name: Murine cell culture (C2C12)

tag: Condition:Control; Time After Induction:0h;


title: VSD-pHanDM12h-1bbAv2-s2

description: Sir2 and myoblast differentiation


title: VSD-pHanSir2DM12h-1cAv2-s2

description: Sir2 and myoblast differentiation


title: VSD-pHanSir2DM36h-1cAv2-s2

description: Sir2 and myoblast differentiation


title: VSD-pHanDM36h-1cAv2-s2

description: Sir2 and myoblast differentiation


title: VSD-pHanSir2DM12h-1aAv2-s2

description: Sir2 and myoblast differentiation


title: VSD-pHanSir2DM36h-1aAv2-s2

description: Sir2 and myoblast differentiation


title: VSD-pHanSir2DM12h-1bAv2-s2

description: Sir2 and myoblast differentiation


title: VSD-pHanDM36h-1aAv2-s2

description: Sir2 and myoblast differentiation


title: VSD-pHanDM12h-1aAv2-s2

description: Sir2 and myoblast differentiation


title: VSD-pHanDM12h-1cAv2-s2

description: Sir2 and myoblast differentiation


title: KNagaraju-m-3-4w-1bAv2-s2

status: Public on Jul 13 2006

description: 3-4 week old male mouse spleen

source_name: Murine spleen

tag: sex/mating type:M; Age:3 to 4 weeks;


title: KNagaraju-m-6-9w-1aAv2-s2

description: 6-9 week old male mouse spleen

tag: sex/mating type:M; Age:6 to 9 weeks;


title: KNagaraju-f-3-4w-1bAv2-s2

description: 3-4 week old female mouse spleen

tag: sex/mating type:F; Age:3 to 4 weeks;


title: KNagaraju-f-6-9w-1aAv2-s2

description: 6-9 week old female mouse spleen

tag: sex/mating type:F; Age:6 to 9 weeks;


title: KNagaraju-m-24-28w-1bAv2-s2

description: 24-28 week old male mouse spleen

tag: sex/mating type:M; Age:24 to 28 weeks;


title: KNagaraju-f-24-28w-1bAv2-s2

description: 24-28 week old female mouse spleen

tag: sex/mating type:F; Age:24 to 28 weeks;


title: KNagaraju-m-6-9w-1bAv2-s2

description: 6-9 week old male mouse spleen


title: KNagaraju-f-6-9w-1bAv2-s2

description: 6-9 week old female mouse spleen


title: KNagaraju-m-24-28w-1aAv2-s2

description: 24-28 week old male mouse spleen


title: FSH-NHM-1UA-S2

description: nomal skeletal muscle from a male 30 year-old healthy volunteer.

source_name: Human skeletal muscle

tag: disease state:NHM;


title: KNagaraju-m-3-4w-1aAv2-s2

description: 3-4 week old male mouse spleen


title: KNagaraju-f-3-4w-1aAv2-s2

description: 3-4 week old female mouse spleen


title: FSH-NHM-2UA-S2

description: nomal skeletal muscle from a female 30 year-old healthy volunteer.


title: KNagaraju-f-24-28w-1aAv2-s2

description: 24-28 week old female mouse spleen


title: VSD-GM_pSuperR-2MB

description: C2C12 cell transduced with empty vector in growth medium.

tag: treatment:control; condition:GM;


title: PGA-MCR-CR-3h-2aMP-s2

description: Restricting the diet of mice by 2/3 results in a loss of lung gas exchange units( alveoli) after calorie restriction within 3 days. Re-feeding results  in alveolar regeneration within the same amount of time. The purpose of this project is to observe the overall gene expression in the lung within the first 3 -6 hours following r-efeeding after a 14 day calorie-restricted diet.

source_name: Murine Lung

tag: Time:3 hr; condition:Calorie Restricted;


title: VSD-GM_pSuperR_p68-1MB

description: C2C12 cells transduced with shRNA p68 in growth medium.

tag: treatment:p68; condition:GM;


title: VSD-GM_pSuperR_p68-2MB


title: CME-LaminA0d-3MA-S2

description: Lamin A/C KO, gastrocnemius muscle 0d post-injection

source_name: Murine skeletal muscle

tag: Time:0 day; condition:LaminA ko;


title: CME-Ctr_LaminA3d-1MA-S2

description: control mouse, gastrocnemius muscle 3d post-injection

tag: Time:3 day; condition:ctr;


title: VSD-DM_pSuperR_p68-2MB

description: C2C12 cells transduced with shRNA p68 in differentiation medium.

tag: treatment:p68; condition:DM;


title: CME-Ctr_LaminA4d-2MA-S2

description: gastrocnemius muscle 4d post-injection

tag: Time:4 day; condition:ctr;


title: CME-LaminA3d-1MA-S2

description: Lamin A/C KO, gastrocnemius muscle 3d post-injection

tag: Time:3 day; condition:LaminA ko;


title: VSD-DM_pSuperR_p68-3MB


title: CME-LaminA4d-1MA-S2

description: Lamin A/C KO, gastrocnemius muscle 4d post-injection

tag: Time:4 day; condition:LaminA ko;


title: CME-Emerin4d-1MA-S2

description: Emerin KO, gastrocnemius muscle 4d post-injection

tag: Time:4 day; condition:Emerin ko;


title: VSD-GM_pSuperR-3MB

description: C2C12 cells transduced with empty vector in growth medium.


title: VSD-GM_pSuperR_p68-3MB


title: VSD-GM_pSuperR-1MB


title: CME-LaminA3d-2MA-S2


title: CME-LaminA4d-3MA-S2


title: VSD-DM_pSuperR-1MB

description: C2C12 cells transduced with empty vector in differentiation medium

tag: treatment:control; condition:DM;


title: VSD-DM_pSuperR-3MB

description: p68 and myoblast differentiation


title: CME-LaminA0d-2MA-S2


title: VSD-pHanSir2DM36h-1bAv2-s2

description: Sir2 and myoblast differentiation

tag: Condition:Control; Time After Induction:0h;


title: CME-Emerin0d-2MA-S2

description: Emerin KO, gastrocnemius muscle non-injected

tag: Time:0 day; condition:Emerin ko;


title: VSD-DM_pSuperR_p68-1MB


title: CME-LaminA3d-3MA-S2


title: CME-Emerin3d-1MA-S2

description: Emerin KO, gastrocnemius muscle 3d post-injection

tag: Time:3 day; condition:Emerin ko;


title: CME-Emerin3d-2MA-S2


title: CME-Emerin4d-2MA-S2


title: CME-Emerin4d-3MA-S2


title: CME-Emerin0d-1MA-S2


title: CME-LaminA0d-1MA-S2


title: CME-Ctr_LaminA3d-2MA-S2


title: VSD-DM_pSuperR_p68-1MA


title: VSD-GM_pSuperR_p68-3MA


title: VSD-DM_pSuperR-2MB

description: C2C12 cells transduced with empty vector in differentiation medium.


title: VSD-DM_pSuperR-3MA

description: C2C12 cells transduced with empty vecor in differentiation medium.


title: VSD-DM_pSuperR-1MA

description: C2C12 cells tranduced with empty vector in differentiation medium.


title: VSD-GM_pSuperR-4MA


title: VSD-DM_pSuperR-2MA


title: VSD-GM_pSuperR-1MA


title: CME-Ctr_LaminA4d-1MA-S2

description: control mouse, gastrocnemius muscle 4d post-injection


title: VSD-GM_pSuperR-3MA


title: VSD-GM_pSuperR_p68-2MA

description: p68 and myoblast differentiation


title: VSD-GM_pSuperR_p68-4MA


title: VSD-DM_pSuperR_p68-2MA


title: VSD-DM_pSuperR_p68-3MA


title: CME-Ctr_LaminA0d-2MA-S2

description: control mouse, gastrocnemius muscle 0d non-injected

tag: Time:0 day; condition:ctr;


title: SCIM-B_I_72h-1MP

status: Public on Jul 12 2006

description: Murine spinal cord from the region below the site of impact was subjected to gene expression profiling 72 hours after moderate injury.

source_name: Murine Spinal cord

tag: region:B; treatment:I; time after injury:72 h;


title: SCIM-I_S_0.5h-2MP

description: Murine spinal cord was subject to gene expression profiling 0.5 hours after laminectomy

tag: region:I; treatment:S; time after injury:0.5 h;


title: SCIM-B_S_7d-1MP

description: Murine spinal cord from the region caudal to the site of impact was subjected to gene expression profiling 7 days after sham-injury (laminectomy only).

tag: region:B; treatment:S; time after injury:7 d;


title: CME-Ctr_LaminA0d-1MA-S2


title: CME-LaminA4d-2MA-S2


title: SCIM-A_I_24h-2MP

description: Murine spinal cord was subject to gene expression profiles 24h after injury in the rostral site

tag: region:A; treatment:I; time after injury:24 h;


title: SCIM-B_I_0.5h-3MP

description: Murine spinal cord from the region caudal to the site of impact was subjected to gene expression profiling 0.5 hours after moderate injury.

tag: region:B; treatment:I; time after injury:0.5 h;


title: SCIM-I_I_4h-1MP

description: Murine spinal cord from the site of impact subjected to expression profiling 4h after moderate injury.

tag: region:I; treatment:I; time after injury:4 h;


title: SCIM-B_I_7d-3MP

description: Murine spinal cord from the region caudal to the site of impact was subjected to gene expression profiling 7 days after moderate injury.

tag: region:B; treatment:I; time after injury:7 d;


title: SCIM-A_I_7d-2MP

description: Murine spinal cord from the region rostral to the site of impact was subjected to gene expression profiling 7 days after moderate injury.

tag: region:A; treatment:I; time after injury:7 d;


title: SCIM-B_S_4h-1MP

description: Murine spinal cord from the region caudal to the site of impact was subjected to gene expression profiling 4 h after sham-injury (laminectomy only).

tag: region:B; treatment:S; time after injury:4 h;


title: SCIM-B_S_0h-1MP

description: A naive murine spinal cord was dissected into a sample that corresponded to the region caudal  to the site of impact in injured or sham mice.  The sample was then subjected to gene expression profiling.

tag: region:B; treatment:S; time after injury:0 h;


title: SCIM-A_S_24h-2MP

description: Murine spinal cord from the region rostral to the site of impact was subjected to gene expression profiling 24 h after sham-injury (laminectomy only).

tag: region:A; treatment:S; time after injury:24 h;


title: CME-Emerin3d-3MA-S2

description: Emerin KO, gastrocnemius muscle 3d post-injection


title: SCIM-B_I_28d-3MP

description: Murine spinal cord from the region caudal to the site of impact was subjected to gene expression profiling 28 days after moderate injury.

tag: region:B; treatment:I; time after injury:28 d;


title: SCIM-I_I_7d-1MP

description: Murine spinal cord from the site of impact was subjected to gene expression profiling 7 days after moderate injury.

tag: region:I; treatment:I; time after injury:7 d;


title: SCIM-A_S_0.5h-2MP

description: Murine spinal cord from the region rostral to the site of impact was subjected to gene expression profiling 0.5  h after sham-injury (laminectomy only).

tag: region:A; treatment:S; time after injury:0.5 h;


title: SCIM-I_S_0h-2MP

description: A naive murine spinal cord was dissected into a sample that corresponded to the site of impact in injured or sham mice.  The sample was then subjected to gene expression profiling.

tag: region:I; treatment:S; time after injury:0 h;


title: SCIM-I_I_0.5h-1MP

description: Murine spinal cord was subject to gene expression profiling 30 minutes after injury

tag: region:I; treatment:I; time after injury:0.5 h;


title: SCIM-B_S_24h-1MP

description: Murine spinal cord caudal to the site of impact subjected to gene expression profiling 24 h after sham-injury (laminectomy only).

tag: region:B; treatment:S; time after injury:24 h;


title: SCIM-B_S_24h-2MP


title: SCIM-B_I_24h-1MP

description: Murine spinal cord from the region caudal to the site of impact was subjected to gene expression profiling 24 hours after moderate injury.

tag: region:B; treatment:I; time after injury:24 h;


title: SCIM-B_S_28d-2MP

description: Murine spinal cord from the region caudal to the site of impact was subjected to gene expression profiling 28 days after sham-injury (laminectomy only).

tag: region:B; treatment:S; time after injury:28 d;


title: SCIM-B_I_28d-1MP


title: SCIM-A_I_7d-1MP


title: SCIM-I_S_0.5h-1MP

description: Murine spinal cord was subject to gene expression profiling 0.5 hours after laminectomy

tag: region:I; treatment:S; time after injury:0.5 h;